BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037414
         (577 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/567 (66%), Positives = 443/567 (78%), Gaps = 53/567 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I  LL CRN+F IRQVHA +VA GTL +L++ANKLLY YA HKA+ DA++LF+G+  RDS
Sbjct: 7   IDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDS 66

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
            +WSVMVGGF+K  D   C+ TFRE +RCG+  D+YTLPFVIR CRDR D+ +GR+IHD+
Sbjct: 67  KTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDV 126

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
           VLK GL  D FVCA+LVDMYAKC V++DA++LF++M ++DLVTWTVMIGA          
Sbjct: 127 VLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESL 186

Query: 234 -------------------------------------------NKFLLDVILGTAVIDMY 250
                                                      N F LDVILGTA+IDMY
Sbjct: 187 VLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMY 246

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           AKCGS++SARE+FDRM++KNVISWSAMIAAYGYHG+GK A+DLF MMLS  +LPNR+TFV
Sbjct: 247 AKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFV 306

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           SLLYACSH GL+EEGLR F+SMW++ AVRPDVKHYTCMVDLLGRAGRLDEAL+LIE+M+V
Sbjct: 307 SLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTV 366

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           EKDE LW ALLGACRIH  ++LAE AA SLLE QPQNPGHYVLLSN+YA AG+W+ VAK 
Sbjct: 367 EKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKF 426

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           RD+MT+R+LKKIPGWTWIEV+NK +QFSVGD +HPQS+EIY ML++L +KLE+AGY+PDT
Sbjct: 427 RDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDT 486

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +F L DV+EEVK   LY+HSEKLAIAFGLIA PEG  IRI KNLRVCGDCH+F K VS+I
Sbjct: 487 DFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSI 546

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
            RR IIVRDANRFHHF  G CSC DYW
Sbjct: 547 MRRSIIVRDANRFHHFNDGTCSCGDYW 573


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  776 bits (2004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/560 (68%), Positives = 434/560 (77%), Gaps = 54/560 (9%)

Query: 72   NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
            N+ Q+RQVH Q    G L NLIVANKL+  Y+ ++AL DA+ LF+GM  RDSVSWSVMVG
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 132  GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            GF+KV D++NCF TFRE IRCG + D+YTLPFVIRACRD K++ MGRLIH IV K GLD+
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 192  DQFVCAALVDMYAKCKVIDDARQLF----------------------------------- 216
            D FVCAALVDMY KC+ I+DAR LF                                   
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 217  ------DQMPTRDLVTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSID 257
                  D++    +V     +GA              KF LDVILGTA+IDM+AKCG ++
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989

Query: 258  SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            SAREIFDRM +KNVISWSAMIAAYGYHGQG+KALDLFPMML S +LPN+IT VSLLYACS
Sbjct: 990  SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 1049

Query: 318  HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
            H GLVEEGLR FS MW+D++VR DVKHYTC+VDLLGRAGRLDEALKLI SM+ EKDEGLW
Sbjct: 1050 HAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLW 1109

Query: 378  GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            GA LGACR HK+V LAE AA SLLE QPQNPGHY+LLSN+YANAGRW+DVAKIRDLM++R
Sbjct: 1110 GAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQR 1169

Query: 438  RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            RLKKIPGWTWIEV+NK HQFSVGD+THP+S+EIY ML +L  KLEL GY+PDTNF LHDV
Sbjct: 1170 RLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDV 1229

Query: 498  DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
            DEE+K+G LY+HSEKLAIAFGLIATPE T IRI+KNLRVCGDCH+F K VSAIT RVIIV
Sbjct: 1230 DEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIV 1289

Query: 558  RDANRFHHFEGGACSCRDYW 577
            RDANRFHHF+ GACSC DYW
Sbjct: 1290 RDANRFHHFKEGACSCGDYW 1309



 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/553 (64%), Positives = 421/553 (76%), Gaps = 54/553 (9%)

Query: 37  QNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN 96
           Q  +N     +      F + ++PKF+IS+L++CRN+ Q+RQVHAQ    G L N++VAN
Sbjct: 39  QTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVAN 98

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
           KL+Y Y+ ++AL DA+ LF+GM  RDSVSWSVMVGGF+KV D+INCF TFRE IRCG + 
Sbjct: 99  KLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARP 158

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D+YTLPFVIRACRD K++ MGRLIH IV K GLD+D FVCAALVDMY KC+ I+DAR LF
Sbjct: 159 DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLF 218

Query: 217 -----------------------------------------DQMPTRDLVTWTVMIGA-- 233
                                                    D++    +V     +GA  
Sbjct: 219 DKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMH 278

Query: 234 -----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                       KF LDVILGTA+IDMYAKCG ++SAREIFDRM +KNVISWSAMIAAYG
Sbjct: 279 KARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 338

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           YHGQG+KALDLFPMMLSS +LP++IT  SLLYACSH GLVEEGLR FSSMW+D++VR DV
Sbjct: 339 YHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDV 398

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           KHYTC+VDLLGRAGRLDEALKLI+SM++EKDEGLWGA LGACR HK+V LAE AA SLLE
Sbjct: 399 KHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLE 458

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            Q QNPGHYVLLSN+YANAGRW+DVAKIRDLM++RRLKK PGWTWIEV+NK HQFSVGD+
Sbjct: 459 LQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDT 518

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
           THP+S+EIY ML +LS KLEL GY+PDTNF LHDVDEE+K+G LY+HSEKLAIAFGLIAT
Sbjct: 519 THPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIAT 578

Query: 523 PEGTHIRIMKNLR 535
           PE T IRI+KNLR
Sbjct: 579 PEHTPIRIIKNLR 591


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  763 bits (1970), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/574 (64%), Positives = 440/574 (76%), Gaps = 54/574 (9%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           +DP FFIS+L  CRNIFQI+QVHAQ+   G + +LIVANKLLY+ A HK L  AH LFN 
Sbjct: 1   MDPDFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNK 60

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M+ERD VSWSVM+GGF K  D+  CF+TFRE IR G + D+++LPFVI+ACRD   ++MG
Sbjct: 61  MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMG 120

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT----------- 226
           RLIH  VLK+GL +D FVC+ LVDMYAKC +ID+A+QLFD+MP +DLVT           
Sbjct: 121 RLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAEC 180

Query: 227 ------WTVM-------------------------------------IGANKFLLDVILG 243
                 W +                                      + A ++ LDV LG
Sbjct: 181 GKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELG 240

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           TA+IDMYAKCGSIDS+REIFDRM QKNVISWSAMI AYGYHGQG++AL+LF MML+S ++
Sbjct: 241 TAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGII 300

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PNRITF+SLLYACSH GLV++GL+LFS M   + VRPDVKHYTCMVDLLGRAGRLD+AL+
Sbjct: 301 PNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALR 360

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           LIE+M VEKDEG+W A LGACRIH+ VDLAE AAK LL  Q QNPGHY+LLSN+YANAGR
Sbjct: 361 LIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGR 420

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W+DVAKIR+LM +RRLKKIPG+TWIEV+N I++F  GD++H +S EIY ML +LS+KLE 
Sbjct: 421 WKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLES 480

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           AGY+PDTN  LHDVDEEVK+G L++HSEKLAIAFGLIATP+GT IRI KNLRVCGDCHSF
Sbjct: 481 AGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSF 540

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            K VSAIT+R IIVRDANRFHHF+ G CSC DYW
Sbjct: 541 CKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/631 (59%), Positives = 439/631 (69%), Gaps = 61/631 (9%)

Query: 1   MSKLKKHGFLVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDP 60
           M K K H   ++   KLRF S+S +    +  + +E  P +         +C      D 
Sbjct: 1   MLKSKCHHIFINY-GKLRFSSASLSWQFDVNCNSNEPTPCSQE------SECSHVLHYDT 53

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           K F SSLLSCRN+FQ+RQVHAQI   G   NL VANKLLY+Y    AL DA  LF+GM +
Sbjct: 54  KRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSK 113

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R   SWSV+VGG++KV +F +CF  FRE +R G  LD Y+ P VIRACRD KD+  GRLI
Sbjct: 114 RHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLI 173

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM--------------------P 220
           H I LK GLD   FVCA LVDMYA+CKV++DA Q+F +M                    P
Sbjct: 174 HCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVP 233

Query: 221 TRDLVTWTVM----------------------------------IGANKFLLDVILGTAV 246
              LV +  M                                  I    + LDVILGTA+
Sbjct: 234 VESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAM 293

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           IDMYAKCGS++SAR IFDRM+ +NVI+WSAMIAAYGYHGQG+KAL+LFPMML S +LPNR
Sbjct: 294 IDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNR 353

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           ITFVSLLYACSH GL+EEG R FSSMWD++ V PDVKHYTCMVDLLGRAGRLDEAL++IE
Sbjct: 354 ITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIE 413

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
            M VEKDE LWGALLGACRIH+++DLAE  A+SLL+ Q Q PGHYVLLSN+YANAG+W+D
Sbjct: 414 GMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWED 473

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           +AK RDLMT+  L+KIPG TWIEV  K++QF VGD THP+S EIY+ML  L EKLE+AGY
Sbjct: 474 MAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGY 533

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
            PDTN  L+DVDEEVK G LYSHSEKLAIAFGL+  P+G  IRI KNLRVCGDCH+F K 
Sbjct: 534 HPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKF 593

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VS I ++ IIVRDA RFHHF+ G CSCRDYW
Sbjct: 594 VSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/521 (68%), Positives = 418/521 (80%), Gaps = 23/521 (4%)

Query: 61  KFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           K  ++SLL    +CRN+ Q+RQVHAQ    G L NLIVANKL++ Y+ ++AL DA+ LF+
Sbjct: 360 KITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFD 419

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           GM  RDSVSWSVMVGGF+KV D++NCF TFRE IRCG + D+YTLPF    C +  + + 
Sbjct: 420 GMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPF----CGNANESL- 474

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
             ++ D + + G+  D+     +V   AK   +  AR + D +  +            KF
Sbjct: 475 --VLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK------------KF 520

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
            LDVILGTA+IDM+AKCG ++SAREIFDRM +KNVISWSAMIAAYGYHGQG+KALDLFPM
Sbjct: 521 QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPM 580

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML S +LPN+IT VSLLYACSH GLVEEGLR FS MW+D++VR DVKHYTC+VDLLGRAG
Sbjct: 581 MLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAG 640

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           RLDEALKLIESM+VEKDEGLWGA LGACR HK+V LAE AA SLLE QPQNPGHY+LLSN
Sbjct: 641 RLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSN 700

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YANAGRW+DVAK RDLM++RRLKKIPGWTWIEV+NK HQFSVGD+THP+S+EIY ML +
Sbjct: 701 IYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKS 760

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L  KLEL GY+PDTNF LHDVDEE+K+G LYSHSEKLAIAFGLIATPE T IRI+KNLRV
Sbjct: 761 LGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRV 820

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCH+F K VSAIT RVIIVRDANRFHHF+ GACSC DYW
Sbjct: 821 CGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 188/406 (46%), Positives = 239/406 (58%), Gaps = 87/406 (21%)

Query: 37  QNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN 96
           Q  +N     +      F + ++PKF+IS+L++CRN+ Q+RQVHAQ    G L N++VAN
Sbjct: 58  QTSLNLHNREEESSKFHFLQRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVAN 117

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
           KL+Y Y+ ++AL DA+ LF+GM  RDSVSWSVMVGGF+KV D+INCF TFRE IRCG + 
Sbjct: 118 KLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARP 177

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D+YTLPFVIRACRD K++ M                     ALVDMY KC+ I+DAR LF
Sbjct: 178 DNYTLPFVIRACRDLKNLQM---------------------ALVDMYVKCREIEDARFLF 216

Query: 217 DQMPTRDLVTWTVM-----------------------------------------IGA-- 233
           D+M  RDLVTWTVM                                         +GA  
Sbjct: 217 DKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMH 276

Query: 234 -----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                       KF LDVILGTA+IDMYAKCG ++SAREIFDRM +KNVISWSAMIAAYG
Sbjct: 277 KARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 336

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-----SMWDDFA 337
           YHGQG+KALDLF MMLSS +LP++IT  SLLYAC +   + +  ++ +      M  +  
Sbjct: 337 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLI 396

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           V   + H+        RA  LD+A  L + M V +D   W  ++G 
Sbjct: 397 VANKLVHFYSYY----RA--LDDAYGLFDGMCV-RDSVSWSVMVGG 435


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  704 bits (1818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/541 (64%), Positives = 404/541 (74%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           ++I+   ++ +YA    +  A  +F+ M+E++ +SWS M+  +          + FR  +
Sbjct: 165 DVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMML 224

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             GM  D  TL  ++ AC D K++ MGRLIH IV K GLD+D FVCAALVDMY KC+ I+
Sbjct: 225 SSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIE 284

Query: 211 DARQLFDQMPTRDLVTWTVM---------------------------------------- 230
           DAR LFD+MP RDLVTWTVM                                        
Sbjct: 285 DARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACA 344

Query: 231 -IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
            +GA              KF LDVILGTA+IDM+AKCG ++SAREIFDRM +KNVISWSA
Sbjct: 345 KLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSA 404

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MIAAYGYHGQG+KALDLFPMML S +LPN+IT VSLLYACSH GLVEEGLR FS MW+D+
Sbjct: 405 MIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDY 464

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
           +VR DVKHYTC+VDLLGRAGRLDEALKLIESM+VEKDEGLWGA LGACR HK+V LAE A
Sbjct: 465 SVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKA 524

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A SLLE QPQNPGHY+LLSN+YANAGRW+DVAK RDLM++RRLKKIPGWTWIEV+NK HQ
Sbjct: 525 ATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQ 584

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FSVGD+THP+S+EIY ML +L  KLEL GY+PDTNF LHDVDEE+K+G LYSHSEKLAIA
Sbjct: 585 FSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIA 644

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLIATPE T IRI+KNLRVCGDCH+F K VSAIT RVIIVRDANRFHHF+ GACSC DY
Sbjct: 645 FGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDY 704

Query: 577 W 577
           W
Sbjct: 705 W 705



 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/370 (47%), Positives = 222/370 (60%), Gaps = 63/370 (17%)

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           MVGGF+KV D+INCF TFRE IRCG + D+YTLPFVIRACRD K++ MGRLIH IV K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------ANKFL---- 237
           LD+D FVCAALVDMY KC+ I+DAR LFD+M  RDLVTWTVMIG       AN+ L    
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 238 -------------------------------------------LDVILGTAVIDMYAKCG 254
                                                      LDVILGTA+IDMYAKCG
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ++SAREIFDRM +KNVISWSAMIAAYGYHGQG+KALDLF MMLSS +LP++IT  SLLY
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESMSVEK 372
           ACS    ++ G RL   +   F +  D+ H+ C  +VD+ G+   +++A  L + M  E+
Sbjct: 241 ACSDLKNLQMG-RLIHHIVYKFGL--DLDHFVCAALVDMYGKCREIEDARFLFDKMP-ER 296

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA--GRWQDVAKI 430
           D   W  ++G      N + + +    + E +   P    +++ V+A A  G       I
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTVVFACAKLGAMHKARTI 355

Query: 431 RDLMTRRRLK 440
            D + R++ +
Sbjct: 356 DDYIQRKKFQ 365



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 197/423 (46%), Gaps = 79/423 (18%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F I +    +N+   R +H  +   G   +  V   L+ +Y   + + DA  LF+ M+ER
Sbjct: 35  FVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQER 94

Query: 122 DSVSWSVMVGGFS---KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
           D V+W+VM+GG++   K  + +  FE  RE    G+  D   +  V+ AC     +   R
Sbjct: 95  DLVTWTVMIGGYAECGKANESLVLFEKMREE---GVVPDKVAMVTVVFACAKLGAMHKAR 151

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
           +I D + +    +D  +  A++DMYAKC  ++ AR++FD+M  +++++W+ MI A     
Sbjct: 152 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 211

Query: 234 -----------------------------------------------NKFLLDV--ILGT 244
                                                           KF LD+   +  
Sbjct: 212 QGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCA 271

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           A++DMY KC  I+ AR +FD+M ++++++W+ MI  Y   G   ++L LF  M    V+P
Sbjct: 272 ALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 331

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDE 360
           +++  V++++AC+  G + +   +     DD+  R     DV   T M+D+  + G ++ 
Sbjct: 332 DKVAMVTVVFACAKLGAMHKARTI-----DDYIQRKKFQLDVILGTAMIDMHAKCGCVES 386

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIH----KNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           A ++ + M  EK+   W A++ A   H    K +DL  M  +S +      P    L+S 
Sbjct: 387 AREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGIL-----PNKITLVSL 440

Query: 417 VYA 419
           +YA
Sbjct: 441 LYA 443


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/512 (58%), Positives = 365/512 (71%), Gaps = 67/512 (13%)

Query: 6    KHGFLVSIS----AKLRFFSSSTTAAIA---LEPHGHEQNPMNPRVPMQM---GPDCQFT 55
            KHG   + +      LRF S+S  AA++    +P  H++  ++P V   +    PD  F+
Sbjct: 1020 KHGIQTTRNILNHVNLRFLSTSMAAALSDTISQPQFHQEATIDPPVTQILKISNPD--FS 1077

Query: 56   RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHAL 114
              +DP   IS+LL+C+NI QI+Q+HA I     L  NL VANKLLY+Y  HK LTDA+AL
Sbjct: 1078 FFMDPNCLISTLLNCKNICQIKQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYAL 1137

Query: 115  FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            F+ M +++ VSWS+M+GGF KV +F+ C++TF+E IR G+Q D+YTLPFVI+ACRD   +
Sbjct: 1138 FDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVAL 1197

Query: 175  VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL---------- 224
             MGRLIH +VLK GL +D FVCAALVDMYAKCKVI+DA+ LFD MP++DL          
Sbjct: 1198 DMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGY 1257

Query: 225  -------------------------------VTWTVMIGA-------------NKFLLDV 240
                                           V     +GA             N+F LDV
Sbjct: 1258 AECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDV 1317

Query: 241  ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            ILGTA+IDMYAKCG +DSAREIFD M  KNVISWSAMIAAYGYHGQGKKAL+LFPMMLSS
Sbjct: 1318 ILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSS 1377

Query: 301  RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
             +LPN ITFVSLLYACSH GLVE+GL L S MW+ F VRPD+KH+TCMVDLLGRAG+L E
Sbjct: 1378 GILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTE 1437

Query: 361  ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
            A + IE+M+VEKDEGLW +LLGACRIHK +DLAE AAKSLLE QPQNPG+Y+LLSN+YAN
Sbjct: 1438 AFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLELQPQNPGNYILLSNIYAN 1497

Query: 421  AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
            AG+W+DVAKIRDLMT+R+LKKIPG+TWIE+++
Sbjct: 1498 AGQWKDVAKIRDLMTKRKLKKIPGYTWIELKS 1529


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/555 (42%), Positives = 348/555 (62%), Gaps = 38/555 (6%)

Query: 61  KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F  ++LL+     RN  Q RQ+HA ++      N+IV  +L+++Y+    L  A  +FN
Sbjct: 278 QFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFN 337

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M ER++ SW+ M+ G+ +  +       F++    G++ D ++L  ++ +C    D   
Sbjct: 338 RMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK 397

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT--WTVMIG-- 232
           GR +H+ ++++ ++ +  +   LVDMYAKC  +D A +++DQ   +D  T  W  ++   
Sbjct: 398 GRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGY 457

Query: 233 ANKFL-----------------LDV----------ILGTAVIDMYAKCGSIDSAREIFDR 265
           ANK L                  DV          +L TA++DMY+KCG+I  AR +FD 
Sbjct: 458 ANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDN 517

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  KN++SW+AMI+ Y  HG  K+AL L+  M    + PN +TF+++L ACSHTGLVEEG
Sbjct: 518 MNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEG 577

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           LR+F+SM +D+ +    +HYTCMVDLLGRAGRL++A + +E M +E +   WGALLGACR
Sbjct: 578 LRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACR 637

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           +HK++D+  +AA+ L E  PQNPG YV++SN+YA AGRW++V  IR +M  + +KK PG 
Sbjct: 638 VHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGV 697

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH---DVDEEVK 502
           +WIE+ ++I  F  G  THP++EEIY  L  L+ + +  GYIPDT+F L    D+ EE +
Sbjct: 698 SWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEE 757

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSE+LA++ GLI+ P+ + IR+ KNLR+CGDCH+  K +S IT R II RD NR
Sbjct: 758 EEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNR 817

Query: 563 FHHFEGGACSCRDYW 577
           FHHFE G CSC DYW
Sbjct: 818 FHHFENGKCSCGDYW 832



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 185/427 (43%), Gaps = 79/427 (18%)

Query: 24  TTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSC--RNIFQI-RQVH 80
           TT  I L+ +G       P  P       +    V+P  + S +  C   N FQ  + +H
Sbjct: 42  TTTTIKLKFNG-------PDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIH 94

Query: 81  AQIVAGGTLTNLIVANKLLYIYALHKALTD---AHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+++ G   +  +  K+L +YA    L D   A  LF  M ER+  +W+ M+  +++V 
Sbjct: 95  TQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVD 154

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D++  +  F   ++ G+  D++T    +R C   +    G+ +H  ++  G   D FV  
Sbjct: 155 DYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGN 214

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------NKFLL------------ 238
           AL+DMYAKC   +   ++FD+M  R+ VTW  +I A       N  L+            
Sbjct: 215 ALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGI 274

Query: 239 --DVILGTAVIDMYAKCGSIDSAREI---------------------------------- 262
             D    T ++ + A   + +  R+I                                  
Sbjct: 275 QPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKE 334

Query: 263 -FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F+RM ++N  SW++MI  Y  +G+ ++AL LF  M  + + P+  +  S+L +C     
Sbjct: 335 IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSD 394

Query: 322 VEEGLRLFSSMWDDFAVRPDVKH----YTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGL 376
            ++G  L      +F VR  ++        +VD+  + G +D A K+  +++  +++  L
Sbjct: 395 SQKGRELH-----NFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTAL 449

Query: 377 WGALLGA 383
           W ++L  
Sbjct: 450 WNSILAG 456


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/576 (41%), Positives = 335/576 (58%), Gaps = 57/576 (9%)

Query: 59   DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            D   F S L+ C+N   +   RQ+H  I+  G   ++ + N L+ +Y    +L DA+ +F
Sbjct: 586  DKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVF 645

Query: 116  NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
            + ++ R+ +SW+ M+GGF+   +    FE F +    G +    T   +++AC     + 
Sbjct: 646  HSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLD 705

Query: 176  MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
             G+ +   +L SG ++D  V  AL+  Y+K   + DAR++FD+MP RD+++W  MI    
Sbjct: 706  EGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYA 765

Query: 234  ----------------------NKFLL------------------------------DVI 241
                                  NKF                                DV 
Sbjct: 766  QNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVR 825

Query: 242  LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            +G A+I MYAKCGS++ A+E+FD   +KNV++W+AMI AY  HG   KALD F  M    
Sbjct: 826  VGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEG 885

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            + P+  TF S+L AC+H+GLV EG R+FSS+     + P ++HY C+V LLGRAGR  EA
Sbjct: 886  IKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEA 945

Query: 362  LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
              LI  M    D  +W  LLGACRIH NV LAE AA + L+   +NP  YVLLSNVYA A
Sbjct: 946  ETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAA 1005

Query: 422  GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            GRW DVAKIR +M  R ++K PG +WIEV+N IH+F   D +HP++ EIY  L  LS ++
Sbjct: 1006 GRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEM 1065

Query: 482  ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
            E AGY PDT + LH++D+E +  +L +HSE+LAIA+GL+ TP GT IRI KNLR+CGDCH
Sbjct: 1066 ERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCH 1125

Query: 542  SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  K +S +  R II RD+NRFH F+ G CSC D+W
Sbjct: 1126 TASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 187/382 (48%), Gaps = 59/382 (15%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+  L +C N       + +H  I+  G  +N  +AN L+ +Y    ++ +A  +F G +
Sbjct: 489 FLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR 548

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD +SW+ M+ G ++   +   ++ F E  + G++ D  T   V+  C++ + + +GR 
Sbjct: 549 ARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ 608

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           IH ++++SGL +D  +  AL++MY +C  + DA ++F  +  R++++WT MIG       
Sbjct: 609 IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGE 668

Query: 234 -------------NKF---------LLDVILGTAVID----------------------- 248
                        + F         +L   + +A +D                       
Sbjct: 669 DRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNA 728

Query: 249 ---MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
               Y+K GS+  AR++FD+M  ++++SW+ MIA Y  +G G  AL     M    V+ N
Sbjct: 729 LISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLN 788

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           + +FVS+L ACS    +EEG R+ + +     ++ DV+    ++ +  + G L+EA ++ 
Sbjct: 789 KFSFVSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRVGAALISMYAKCGSLEEAQEVF 847

Query: 366 ESMSVEKDEGLWGALLGACRIH 387
           ++ + EK+   W A++ A   H
Sbjct: 848 DNFT-EKNVVTWNAMINAYAQH 868



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 162/344 (47%), Gaps = 55/344 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H+ I   G  +++ + N L+ +YA    L  A  LFN M +RD +SW+ ++ G+++  D
Sbjct: 407 IHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARRED 466

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                + +++    G++    T   ++ AC +      G++IH+ +L+SG+  +  +  A
Sbjct: 467 RGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANA 526

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------GANKFLL---------- 238
           L++MY +C  I +A+ +F+    RD+++W  MI           A K  L          
Sbjct: 527 LMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPD 586

Query: 239 ----------------------------------DVILGTAVIDMYAKCGSIDSAREIFD 264
                                             DV LG A+I+MY +CGS+  A E+F 
Sbjct: 587 KITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFH 646

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            +R +NV+SW+AMI  +   G+ +KA +LF  M +    P + TF S+L AC  +  ++E
Sbjct: 647 SLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDE 706

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           G ++ + + +      D      ++    ++G + +A K+ + M
Sbjct: 707 GKKVIAHILNS-GYELDTGVGNALISAYSKSGSMTDARKVFDKM 749



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 192/427 (44%), Gaps = 61/427 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++ + +++HAQ+V  G   ++ ++N L+ +Y   ++++DAH +F  M  RD +SW+ ++
Sbjct: 96  RSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLI 155

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             +++       F+ F E    G      T   ++ AC    ++  G+ IH  ++++G  
Sbjct: 156 SCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQ 215

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDVILG----- 243
            D  V  +L++MY KC+ +  ARQ+F  +  RD+V++  M+G  A K  ++  +G     
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM 275

Query: 244 -----------------------------------------------TAVIDMYAKCGSI 256
                                                          TA+  M+ +CG +
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDV 335

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             A++  +    ++V+ ++A+IAA   HG  ++A + +  M S  V+ NR T++S+L AC
Sbjct: 336 AGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNAC 395

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S +  +  G  L  S   +     DV+    ++ +  R G L  A +L  +M  ++D   
Sbjct: 396 STSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLIS 453

Query: 377 WGALLGACRIHKNVDLAE-MAAKSLLERQPQNPGHYVLLSNVYA--NAGRWQDVAKIRDL 433
           W A++      +  D  E M     ++ +   PG    L  + A  N+  + D   I + 
Sbjct: 454 WNAIIAG--YARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHED 511

Query: 434 MTRRRLK 440
           + R  +K
Sbjct: 512 ILRSGIK 518



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 158/361 (43%), Gaps = 56/361 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   V  G  +++ V   L  ++     +  A        +RD V ++ ++   ++ 
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQH 363

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +   FE + +    G+ ++  T   V+ AC   K +  G LIH  + + G   D  + 
Sbjct: 364 GHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIG 423

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            +L+ MYA+C  +  AR+LF+ MP RDL++W  +I                         
Sbjct: 424 NSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVK 483

Query: 234 ---------------------NKFLLDVILGTAV----------IDMYAKCGSIDSAREI 262
                                 K + + IL + +          ++MY +CGSI  A+ +
Sbjct: 484 PGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNV 543

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+  R +++ISW++MIA +  HG  + A  LF  M    + P++ITF S+L  C +   +
Sbjct: 544 FEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEAL 603

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E G R    +  +  ++ DV     ++++  R G L +A ++  S+   ++   W A++G
Sbjct: 604 ELG-RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR-HRNVMSWTAMIG 661

Query: 383 A 383
            
Sbjct: 662 G 662



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 77/238 (32%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C  ++ +   + IH  ++++G+  D F+   L++MY KC+ + DA Q+F +MP RD
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           +++W  +I                                               + Y  
Sbjct: 148 VISWNSLI-----------------------------------------------SCYAQ 160

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-----------HTGLVEEGL----RL 328
            G  KKA  LF  M ++  +P++IT++S+L AC            H+ ++E G     R+
Sbjct: 161 QGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRV 220

Query: 329 FSSMWDDFA---------------VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
            +S+ + +                 R DV  Y  M+ L  +   ++E + L   MS E
Sbjct: 221 QNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSE 278


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/626 (38%), Positives = 354/626 (56%), Gaps = 94/626 (15%)

Query: 46   MQMGPDCQFTRSVDP-KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100
            +++  D Q    + P +F  ++LL+     RN  Q RQ+HA ++      N+IV  +L++
Sbjct: 463  LELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH 522

Query: 101  IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
            +Y+    L  A  +FN M ER++ SW+ M+ G+ +  +       F++    G++ D ++
Sbjct: 523  MYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFS 582

Query: 161  LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID---------- 210
            L  ++ +C    D   GR +H+ ++++ ++ +  +   LVDMYAKC  +D          
Sbjct: 583  LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI 642

Query: 211  ---------------------DARQLFDQMPTRDLVTWTVMIGA-----------NKFL- 237
                                 DA+ LFDQM  R+   W  ++             N FL 
Sbjct: 643  KKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLE 702

Query: 238  -------------------------------------------LDVILGTAVIDMYAKCG 254
                                                         V+L TA++DMY+KCG
Sbjct: 703  MLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCG 762

Query: 255  SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +I  AR +FD M  KN++SW+AMI+ Y  HG  K+AL L+  M    + PN +TF+++L 
Sbjct: 763  AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 822

Query: 315  ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            ACSHTGLVEEGLR+F+SM +D+ +    +HYTCMVDLLGRAGRL++A + +E M +E + 
Sbjct: 823  ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 882

Query: 375  GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
              WGALLGACR+HK++D+  +AA+ L E  PQNPG YV++SN+YA AGRW++V  IR +M
Sbjct: 883  STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 942

Query: 435  TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
              + +KK PG +WIE+ ++I  F  G  THP++EEIY  L  L+ + +  GYIPDT+F L
Sbjct: 943  KMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFIL 1002

Query: 495  H---DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
                D+ EE +   L  HSE+LA++ GLI+ P+ + IR+ KNLR+CGDCH+  K +S IT
Sbjct: 1003 QNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKIT 1062

Query: 552  RRVIIVRDANRFHHFEGGACSCRDYW 577
             R II RD NRFHHFE G CSC DYW
Sbjct: 1063 GRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 178/377 (47%), Gaps = 65/377 (17%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I + ++  ++  +RQ+ + +V  G   NL V   L+  YA    + DA    + ++    
Sbjct: 182 IKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSV 241

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           V+W+ ++ G+ K+  +   +  F   ++ G+  D++T    +R C   +    G+ +H  
Sbjct: 242 VTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSK 301

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
           ++  G   D FV  AL+DMYAKC   +   ++FD+M  R+ VTW  +I A          
Sbjct: 302 LIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDA 361

Query: 234 --------------NKFLL------------------------------DVILGTAVIDM 249
                         N+F L                              D+ILG+A++DM
Sbjct: 362 LVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDM 421

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRIT 308
           Y+KCG ++ A ++F  + ++N +S++A++A Y   G+ ++AL+L+  M S   + P++ T
Sbjct: 422 YSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFT 481

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKL 364
           F +LL  C++     +G ++ + +     +R ++       T +V +    GRL+ A ++
Sbjct: 482 FTTLLTLCANQRNDNQGRQIHAHL-----IRANITKNIIVETELVHMYSECGRLNYAKEI 536

Query: 365 IESMSVEKDEGLWGALL 381
              M+ E++   W +++
Sbjct: 537 FNRMA-ERNAYSWNSMI 552



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 178/420 (42%), Gaps = 69/420 (16%)

Query: 24  TTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSC--RNIFQI-RQVH 80
           TT  I L+ +G       P  P       +    V+P  + S +  C   N FQ  + +H
Sbjct: 42  TTTTIKLKFNG-------PDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIH 94

Query: 81  AQIVAGGTLTNLIVANKLLYIYALHKALTD---AHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+++ G   +  +  K+L +YA    L D   A  LF  M ER+  +W+ M+  +++V 
Sbjct: 95  TQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVD 154

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D++     +      G   D +T P VI+AC   +D+   R +   V+K+GL+ + FV  
Sbjct: 155 DYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGG 214

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----- 252
           ALVD YA+   +DDA    D++    +VTW  +I     +L       + D   K     
Sbjct: 215 ALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCP 274

Query: 253 -----------CGSI--------------------------------------DSAREIF 263
                      CG++                                      +S  ++F
Sbjct: 275 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 334

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M ++N ++W+++I+A    G    AL LF  M  S    NR    S+L A +    + 
Sbjct: 335 DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G  L   +  +  +  D+   + +VD+  + G ++EA ++  S+ +E++E  + ALL  
Sbjct: 395 KGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALLAG 452


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/572 (41%), Positives = 341/572 (59%), Gaps = 58/572 (10%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S L +C +   ++   Q+   I+  G  ++  V   LL +YA   +L DAH +F  + 
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS 475

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +++ V+W+ M+  + +   + N   TF+  ++ G++ +S T   ++  C+    + +G+ 
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW 535

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GA 233
           +H +++K+GL+ D  V  ALV M+  C  +  A+ LF+ MP RDLV+W  +I      G 
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595

Query: 234 NK------------------------------------------------FLLDVILGTA 245
           N+                                                F  DV++GT 
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTG 655

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I MY KCGSI+ A ++F ++ +KNV SW++MIA Y  HG+GK+AL+LF  M    V P+
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPD 715

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            ITFV  L AC+H GL+EEGL  F SM  +F + P ++HY CMVDL GRAG L+EA++ I
Sbjct: 716 WITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFI 774

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
             M VE D  +WGALLGAC++H NV+LAE AA+  LE  P + G +V+LSN+YA AG W+
Sbjct: 775 IKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWK 834

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           +VAK+R +M  R + K PG +WIEV+ K+H F   D THPQ+EEI+  L  L  ++   G
Sbjct: 835 EVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLG 894

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PDT + LHDV++  K   L+ HSE+LAI +GL+ TP  T I I KNLRVCGDCH+  K
Sbjct: 895 YVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATK 954

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S IT+R II RD+NRFHHF+ G CSC D+W
Sbjct: 955 FISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 198/414 (47%), Gaps = 62/414 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +N+    +++  I   G   ++ + N L+ +YA       A  +F+ M+E+D  SW++++
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           GG+ +   +   F+   + ++  ++ D  T   ++ AC D +++  GR +++++LK+G D
Sbjct: 184 GGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWD 243

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLLD 239
            D FV  AL++M+ KC  I DA ++FD +PTRDLVTWT MI             N F   
Sbjct: 244 TDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM 303

Query: 240 VILG-----TAVIDMYAKCG---SIDSAREIFDRMRQ----------------------- 268
              G      A + +   C    +++  +++  RM++                       
Sbjct: 304 EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSM 363

Query: 269 ------------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
                       +NV+SW+AMIA +  HG+  +A   F  M+ S + PNR+TF+S+L AC
Sbjct: 364 EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S    ++ G ++   + +      D +  T ++ +  + G L +A ++ E +S +++   
Sbjct: 424 SSPSALKRGQQIQDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVA 481

Query: 377 WGALLGACRIHKNVDLAEMAAKSLL-ERQPQNPGHYVLLSNVYANA-----GRW 424
           W A++ A   H+  D A    ++LL E    N   +  + NV  ++     G+W
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW 535



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 173/397 (43%), Gaps = 69/397 (17%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D + F+S L +C   RN+ + R+++  I+  G  T+L V   L+ ++     + DA  +F
Sbjct: 210 DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVF 269

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + +  RD V+W+ M+ G ++   F      F+     G+Q D      ++RAC   + + 
Sbjct: 270 DNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALE 329

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G+ +H  + + G D + +V  A++ MY KC  ++DA ++FD +  R++V+WT MI    
Sbjct: 330 QGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 234 ----------------------NKFLLDVILG---------------------------- 243
                                 N+     ILG                            
Sbjct: 390 QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             TA++ MYAKCGS+  A  +F+++ ++NV++W+AMI AY  H Q   AL  F  +L   
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-----AVRPDVKHYTCMVDLLGRAG 356
           + PN  TF S+L  C  +  +E G       W  F      +  D+     +V +    G
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELG------KWVHFLIMKAGLESDLHVSNALVSMFVNCG 563

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            L  A  L   M  ++D   W  ++     H    +A
Sbjct: 564 DLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 179/419 (42%), Gaps = 112/419 (26%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D+   + ++   SK   F    +         +Q+   T   +++ C   K++  G  I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------- 233
           ++ + KSG+  D F+   L++MYAKC     A+Q+FD M  +D+ +W +++G        
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 234 -------------------------------------NKFLLDVIL----------GTAV 246
                                                 + L ++IL          GTA+
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I+M+ KCG I  A ++FD +  +++++W++MI     HG+ K+A +LF  M    V P++
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSM----WD--------------------------DF 336
           + FVSLL AC+H   +E+G ++ + M    WD                          D 
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEAL----KLIESMSVEKDEGLWGALLGACRIHKNVDL 392
               +V  +T M+    + GR+DEA     K+IES  +E +   + ++LGAC        
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIES-GIEPNRVTFMSILGAC-------- 423

Query: 393 AEMAAKSLLERQPQNPGHYV------------LLSNVYANAGRWQDVAKIRDLMTRRRL 439
              ++ S L+R  Q   H +             L ++YA  G  +D  ++ + ++++ +
Sbjct: 424 ---SSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/572 (40%), Positives = 340/572 (59%), Gaps = 58/572 (10%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S L +C +   ++   Q+   I+  G  ++  V   LL +YA   +L DAH +F  + 
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS 475

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +++ V+W+ M+  + +   + N   TF+  ++ G++ +S T   ++  C+    + +G+ 
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW 535

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GA 233
           +H +++K+GL+ D  V  ALV M+  C  +  A+ LF+ MP RDLV+W  +I      G 
Sbjct: 536 VHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGK 595

Query: 234 NK------------------------------------------------FLLDVILGTA 245
           N+                                                F  DV++GT 
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTG 655

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I MY KCGSI+ A ++F ++ +KNV SW++MI  Y  HG+GK+AL+LF  M    V P+
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPD 715

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            ITFV  L AC+H GL+EEGL  F SM  +F + P ++HY CMVDL GRAG L+EA++ I
Sbjct: 716 WITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFI 774

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
             M VE D  +WGALLGAC++H NV+LAE AA+  LE  P + G +V+LSN+YA AG W+
Sbjct: 775 IKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWK 834

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           +VAK+R +M  R + K PG +WIEV+ K+H F   D THPQ+EEI+  L  L  ++   G
Sbjct: 835 EVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLG 894

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PDT + LHDV++  K   L+ HSE+LAI +GL+ TP  T I I KNLRVCGDCH+  K
Sbjct: 895 YVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATK 954

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S IT+R II RD+NRFHHF+ G CSC D+W
Sbjct: 955 FISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 198/414 (47%), Gaps = 62/414 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +N+    +++  I   G   ++ + N L+ +YA       A  +F+ M+E+D  SW++++
Sbjct: 124 KNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLL 183

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           GG+ +   +   F+   + ++  ++ D  T   ++ AC D +++  GR +++++LK+G D
Sbjct: 184 GGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWD 243

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLLD 239
            D FV  AL++M+ KC  I DA ++FD +PTRDLVTWT MI             N F   
Sbjct: 244 TDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRM 303

Query: 240 VILG-----TAVIDMYAKCG---SIDSAREIFDRMRQ----------------------- 268
              G      A + +   C    +++  +++  RM++                       
Sbjct: 304 EEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSM 363

Query: 269 ------------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
                       +NV+SW+AMIA +  HG+  +A   F  M+ S + PNR+TF+S+L AC
Sbjct: 364 EDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S    ++ G ++   + +      D +  T ++ +  + G L +A ++ E +S +++   
Sbjct: 424 SSPSALKRGQQIQDHIIEA-GYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVA 481

Query: 377 WGALLGACRIHKNVDLAEMAAKSLL-ERQPQNPGHYVLLSNVYANA-----GRW 424
           W A++ A   H+  D A    ++LL E    N   +  + NV  ++     G+W
Sbjct: 482 WNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW 535



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 173/397 (43%), Gaps = 69/397 (17%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D + F+S L +C   RN+ + R+++  I+  G  T+L V   L+ ++     + DA  +F
Sbjct: 210 DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVF 269

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + +  RD V+W+ M+ G ++   F      F+     G+Q D      ++RAC   + + 
Sbjct: 270 DNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALE 329

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G+ +H  + + G D + +V  A++ MY KC  ++DA ++FD +  R++V+WT MI    
Sbjct: 330 QGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 234 ----------------------NKFLLDVILG---------------------------- 243
                                 N+     ILG                            
Sbjct: 390 QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             TA++ MYAKCGS+  A  +F+++ ++NV++W+AMI AY  H Q   AL  F  +L   
Sbjct: 450 VRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEG 509

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-----AVRPDVKHYTCMVDLLGRAG 356
           + PN  TF S+L  C  +  +E G       W  F      +  D+     +V +    G
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELG------KWVHFLIMKAGLESDLHVSNALVSMFVNCG 563

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            L  A  L   M  ++D   W  ++     H    +A
Sbjct: 564 DLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/419 (23%), Positives = 179/419 (42%), Gaps = 112/419 (26%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D+   + ++   SK   F    +         +Q+   T   +++ C   K++  G  I
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------- 233
           ++ + KSG+  D F+   L++MYAKC     A+Q+FD M  +D+ +W +++G        
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 234 -------------------------------------NKFLLDVIL----------GTAV 246
                                                 + L ++IL          GTA+
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I+M+ KCG I  A ++FD +  +++++W++MI     HG+ K+A +LF  M    V P++
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSM----WD--------------------------DF 336
           + FVSLL AC+H   +E+G ++ + M    WD                          D 
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEAL----KLIESMSVEKDEGLWGALLGACRIHKNVDL 392
               +V  +T M+    + GR+DEA     K+IES  +E +   + ++LGAC        
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIES-GIEPNRVTFMSILGAC-------- 423

Query: 393 AEMAAKSLLERQPQNPGHYV------------LLSNVYANAGRWQDVAKIRDLMTRRRL 439
              ++ S L+R  Q   H +             L ++YA  G  +D  ++ + ++++ +
Sbjct: 424 ---SSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNV 479


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/566 (41%), Positives = 332/566 (58%), Gaps = 59/566 (10%)

Query: 66   SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
            S  SC     +++ HA+I A G   +  +  K   +Y     +  A  +F  +    S  
Sbjct: 731  SCFSC-----LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFL 785

Query: 126  WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
            W+VM+ GF+    F++  E + + +  G++ D +  PF +++C    D+  G++IH  ++
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLV 845

Query: 186  KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM-------------------------- 219
              G   D FV AALVDMYAKC  I+ AR +FD+M                          
Sbjct: 846  CCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLG 905

Query: 220  -----------PTRDLVTWTVMIGAN-----------------KFLLDVILGTAVIDMYA 251
                       P R  +   ++   N                  F  D+++ TA++DMY+
Sbjct: 906  FFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYS 965

Query: 252  KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            KCGS+D AR +FD    K+++ WSAMIA+YG HG G+KA+DLF  M+ + V P+ +TF  
Sbjct: 966  KCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTC 1025

Query: 312  LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
            +L ACSH+GL+EEG   F  M ++F +   + +Y CMVDLLGRAG+L EA+ LIE+M VE
Sbjct: 1026 VLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE 1085

Query: 372  KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
             D  +WG+LLGACRIH N+DLAE  A  L    P + G++VLLSN+YA   RW +V K+R
Sbjct: 1086 PDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVR 1145

Query: 432  DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
             +M RR   KI G++ +E +N++H+F VGD +HPQ E++Y  L  L+  ++  GY+P T+
Sbjct: 1146 KMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTD 1205

Query: 492  FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
            F LHD++EE K   L  HSE+LAIAFGLI T  GT +RI KNLR+CGDCH+ IK +S I 
Sbjct: 1206 FVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIV 1265

Query: 552  RRVIIVRDANRFHHFEGGACSCRDYW 577
             RVI+VRD +RFH FE G CSC DYW
Sbjct: 1266 NRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/498 (34%), Positives = 265/498 (53%), Gaps = 58/498 (11%)

Query: 58  VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +DP   +S + +C  +  ++    VH  ++      +L + N LL +YA       A  L
Sbjct: 204 LDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANL 263

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M E+D +SWS M+  ++           F E I    + +S T+   ++AC   +++
Sbjct: 264 FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNL 323

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
             G+ IH I +  G ++D  V  AL+DMY KC   D+A                      
Sbjct: 324 EEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGY 383

Query: 213 -------------RQLFDQMPTRDLVTWTVMIGANK-------------------FLLDV 240
                        R +       D V    ++ A+                    F  +V
Sbjct: 384 AQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNV 443

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-S 299
            +G ++I++Y+KCGS+  A ++F  M  ++V+ WS+MIAAYG HG+G +AL++F  M+ +
Sbjct: 444 FVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKN 503

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           S V PN +TF+S+L ACSH GLVEEGL++F  M  D+ +RPD +H+  MVDLLGR G+L 
Sbjct: 504 STVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLG 563

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +A+ +I  M +     +WGALLGACRIH N+++ E AAK+L    P + G+Y+LLSN+YA
Sbjct: 564 KAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYA 623

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
             G+W +VA++R  +  R LKK+ G + +EV   +H F   D  HP S++IY +L  L  
Sbjct: 624 VDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEA 683

Query: 480 KLELAGYIPDTNFELHDV 497
           ++    YIPD +F LHD 
Sbjct: 684 QMGKEVYIPDLDFLLHDT 701



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 168/371 (45%), Gaps = 61/371 (16%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           +C N   + Q+H+Q+   G L +   A KL  +YA   +L  A  +F+     +   W+ 
Sbjct: 13  ACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNS 72

Query: 129 MVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            +  + +   +      F   I   G   D++T+P  ++AC   + + +G++IH    K+
Sbjct: 73  TLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKN 132

Query: 188 G-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---------------- 230
             +  D FV +ALV++Y+KC  + +A ++F++    D V WT M                
Sbjct: 133 DEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALAL 192

Query: 231 --------------------IGANKFLLDVILGTAV-------------------IDMYA 251
                               + A   LL+V  G+ V                   +++YA
Sbjct: 193 FSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYA 252

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           K G    A  +F +M +K+VISWS MIA Y  +    +AL+LF  M+  R  PN +T VS
Sbjct: 253 KTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVS 312

Query: 312 LLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            L AC+ +  +EEG ++   ++W  F +  D    T ++D+  +    DEA+ L + +  
Sbjct: 313 ALQACAVSRNLEEGKKIHKIAVWKGFEL--DFSVSTALIDMYMKCSCPDEAVDLFQRLP- 369

Query: 371 EKDEGLWGALL 381
           +KD   W ALL
Sbjct: 370 KKDVVSWVALL 380



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 14/184 (7%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           LVD++  C       QL  Q            +     L D    T +  +YAKC S+ +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQ------------VFKTGILHDTFFATKLNSLYAKCASLQA 54

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACS 317
           AR++FD     NV  W++ + +Y    Q ++ L LF +M+ ++   P+  T    L AC+
Sbjct: 55  ARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACA 114

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
              ++E G  +      +  +  D+   + +V+L  + G++ EALK+ E      D  LW
Sbjct: 115 GLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQ-RPDTVLW 173

Query: 378 GALL 381
            +++
Sbjct: 174 TSMV 177



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 139/349 (39%), Gaps = 78/349 (22%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           + +AC + + +     +H  V K+G+  D F    L  +YAKC  +  AR++FD+ P  +
Sbjct: 10  LFQACNNGRSVSQ---LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 224 LVTWT--------------------VMI-----GANKFLLDVILGTA----------VID 248
           +  W                     +MI       + F + + L             VI 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 249 MYAK---------------------CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
            +AK                     CG +  A ++F+  ++ + + W++M+  Y  +   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 288 KKALDLFP-MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDV 342
           ++AL LF  M++   V+ + +T VS++ AC+    V+ G     S      +R     D+
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAG-----SCVHGLVIRREFDGDL 241

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
                +++L  + G    A  L   M  EKD   W  ++     ++  + A      ++E
Sbjct: 242 PLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMIACYANNEAANEALNLFHEMIE 300

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           ++ + P    ++S +       Q  A  R+L   +++ KI  W   E++
Sbjct: 301 KRFE-PNSVTVVSAL-------QACAVSRNLEEGKKIHKIAVWKGFELD 341


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/557 (42%), Positives = 330/557 (59%), Gaps = 54/557 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +Q+H   +  G  ++++V N L+ +YA    +  AH LF  M  RD  SW+ ++GG+S
Sbjct: 239 QGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             +        F      G++ +S T+  V+ AC     +  G+ IH   ++SG + +  
Sbjct: 299 LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV 358

Query: 195 VCAALVDMYAKCKVIDDARQ-------------------------------LFDQMPTRD 223
           V  ALV+MYAKC  ++ A +                               LF +M  + 
Sbjct: 359 VGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG 418

Query: 224 L-----VTWTVMIGANKFLL------------------DVILGTAVIDMYAKCGSIDSAR 260
           +        +V+     FL                   +V++GT ++D+YAKCG++++A+
Sbjct: 419 IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQ 478

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++F+RM +++V+SW+ MI AYG HG G+ AL LF  M  +    + I F ++L ACSH G
Sbjct: 479 KLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAG 538

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           LV++GL+ F  M  D+ + P ++HY C+VDLLGRAG LDEA  +I++MS+E D  +WGAL
Sbjct: 539 LVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGAL 598

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           LGACRIH N++L E AAK L E  P N G+YVLLSN+YA A RW+DVAK+R +M  + +K
Sbjct: 599 LGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVK 658

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K PG + + V   +  F VGD THPQSE+IY ML  L E++  AGY+P+TN  L DV+EE
Sbjct: 659 KQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEE 718

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L SHSEKLAI+FG+I T  G  IRIMKNLRVC DCH+  K +S I  R IIVRDA
Sbjct: 719 AKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDA 778

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHH + G CSC DYW
Sbjct: 779 NRFHHVKNGFCSCGDYW 795



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 189/386 (48%), Gaps = 59/386 (15%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F+S + +C +   +   R+VH  I+A G  +++IV   L  +Y    +L +A  +F
Sbjct: 119 DKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVF 178

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M +RD VSW+ ++ G+S+          F E    G++ +S TL  V+  C     + 
Sbjct: 179 DRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALE 238

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--- 232
            G+ IH   ++SG++ D  V   LV+MYAKC  ++ A +LF++MP RD+ +W  +IG   
Sbjct: 239 QGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298

Query: 233 ----------------------------------ANKFLLD---VILGTAV--------- 246
                                             A+ F L+    I G A+         
Sbjct: 299 LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV 358

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                ++MYAKCG+++SA ++F+RM +KNV++W+A+I+ Y  HG   +AL LF  M +  
Sbjct: 359 VGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQG 418

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+    VS+L AC+H   +E+G ++            +V   T +VD+  + G ++ A
Sbjct: 419 IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTA 477

Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
            KL E M  E+D   W  ++ A  IH
Sbjct: 478 QKLFERMP-EQDVVSWTTMILAYGIH 502



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 118/267 (44%), Gaps = 57/267 (21%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            ++V W   + G+ K   +      + +  R G+  D      VI+AC  + D+  GR +
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H+ ++  G + D  V  AL  MY KC  +++ARQ+FD+MP RD+V+W             
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSW------------- 189

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                                             +A+IA Y  +GQ  +AL LF  M  +
Sbjct: 190 ----------------------------------NAIIAGYSQNGQPYEALALFSEMQVN 215

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAG 356
            + PN  T VS++  C+H   +E+G ++       +A+R     DV     +V++  + G
Sbjct: 216 GIKPNSSTLVSVMPVCAHLLALEQGKQIHC-----YAIRSGIESDVLVVNGLVNMYAKCG 270

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGA 383
            ++ A KL E M + +D   W A++G 
Sbjct: 271 NVNTAHKLFERMPI-RDVASWNAIIGG 296



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 8/119 (6%)

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
           + N + W   I  Y  +G   KAL L+  M  + + P+++ F+S++ AC     ++ G +
Sbjct: 82  RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRK 141

Query: 328 LFSSMWDDFAVR---PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +     +D   R    DV   T +  +  + G L+ A ++ + M  ++D   W A++  
Sbjct: 142 VH----EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAIIAG 195


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/555 (42%), Positives = 325/555 (58%), Gaps = 54/555 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            R++H+++V  G + ++ V N L+ +YA   ++ DA  LFN M  +D +SW+ M+GG +K 
Sbjct: 466  REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                     F++  + G++ +  T   ++ AC     +  GR IH  V+++GL  D  V 
Sbjct: 526  GLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVA 585

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLV------------------------------- 225
              LV+MY+ C  + DARQ+FD+M  RD+V                               
Sbjct: 586  NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 645

Query: 226  ----TWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                T+  M+ A                   + +L D  LG A++  YAKCGS   A  +
Sbjct: 646  PDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLV 705

Query: 263  FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
            FD+M ++NVISW+A+I     HG+G+  L LF  M    + P+ +TFVSLL ACSH GL+
Sbjct: 706  FDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLL 765

Query: 323  EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EEG R F SM  DF + P ++HY CMVDLLGRAG+LDE   LI++M  + +  +WGALLG
Sbjct: 766  EEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLG 825

Query: 383  ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            ACRIH NV +AE AA+S L+  P N   YV LS++YA AG W   AK+R LM +R + K 
Sbjct: 826  ACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 885

Query: 443  PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            PG +WIEV +K+H F   D +HP+SE+IY  L  L+  +++ GY+PDT   +HDVDE  K
Sbjct: 886  PGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEK 945

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               +  HSE+LAIA+GLI+T  GT IRI KNLRVC DCH+  K ++ I  R I+ RD NR
Sbjct: 946  ENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNR 1005

Query: 563  FHHFEGGACSCRDYW 577
            FHHF+ G CSC DYW
Sbjct: 1006 FHHFKDGVCSCGDYW 1020



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 174/365 (47%), Gaps = 56/365 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH+ I+  G  ++L V   L+ +YA   +  D   +F  +  RD ++W+ M+GG ++ 
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            ++    E + +  R GM  +  T   ++ AC +   +  GR IH  V+K G   D  V 
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+ MYA+C  I DAR LF++M  +D+++WT MIG                        
Sbjct: 485 NALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLK 544

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            N+     IL                                 +++MY+ CGS+  AR++
Sbjct: 545 PNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQV 604

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDRM Q+++++++AMI  Y  H  GK+AL LF  +    + P+++T++++L AC+++G +
Sbjct: 605 FDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 664

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E    + S +  D     D      +V    + G   +AL + + M ++++   W A++G
Sbjct: 665 EWAKEIHSLVLKD-GYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIG 722

Query: 383 ACRIH 387
            C  H
Sbjct: 723 GCAQH 727



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 195/416 (46%), Gaps = 59/416 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H + +    L ++ VAN +L +YA   ++ +A  +F+ M+ +  VSW++++GG++  
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                 FE F++  + G+  +  T   V+ A      +  G+ +H  +L +G + D  V 
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            ALV MYAKC    D RQ+F+++  RDL+ W  MIG                        
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 234 -NKFLLDVILG------------------------------TAVIDMYAKCGSIDSAREI 262
            NK    ++L                                A+I MYA+CGSI  AR +
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F++M +K++ISW+AMI      G G +AL +F  M  + + PNR+T+ S+L ACS    +
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAAL 563

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           + G R+   +  +  +  D      +V++    G + +A ++ + M+ ++D   + A++G
Sbjct: 564 DWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIG 621

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGH--YVLLSNVYANAGRWQDVAKIRDLMTR 436
               H N+    +     L+ +   P    Y+ + N  AN+G  +   +I  L+ +
Sbjct: 622 GYAAH-NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLK 676



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 204/471 (43%), Gaps = 90/471 (19%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           S D    +   +  +++   R+VH  I+   T+ +    N L+ +Y    ++ +A  ++N
Sbjct: 141 SCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWN 200

Query: 117 GMK--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            +   ER   SW+ MV G+ +        +  RE  + G+ L   T   ++ +C+    +
Sbjct: 201 KLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSAL 260

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             GR IH   +K+ L  D  V   +++MYAKC  I +AR++FD+M T+ +V+WT++IG  
Sbjct: 261 ECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGY 320

Query: 234 -----------------------NKF----LLDVILGTAVI------------------- 247
                                  N+     +L+   G A +                   
Sbjct: 321 ADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDL 380

Query: 248 -------DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                   MYAKCGS    R++F+++  +++I+W+ MI      G  ++A +++  M   
Sbjct: 381 AVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQRE 440

Query: 301 RVLPNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWD--------------- 334
            ++PN+IT+V LL AC            H+ +V++G     S+ +               
Sbjct: 441 GMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDA 500

Query: 335 ----DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIH 387
               +  VR D+  +T M+  L ++G   EAL + + M    ++ +   + ++L AC   
Sbjct: 501 RLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSP 560

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYV-LLSNVYANAGRWQDVAKIRDLMTRR 437
             +D      + ++E       H    L N+Y+  G  +D  ++ D MT+R
Sbjct: 561 AALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQR 611



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 145/325 (44%), Gaps = 59/325 (18%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G +++S     +++ C + KD+V GR +H+ +++    +DQ+   AL++MY +C  I++A
Sbjct: 136 GARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEA 195

Query: 213 RQLFDQM--PTRDLVTWTVMI----------GANKFLLD-----VILGTA-VIDMYAKCG 254
           RQ+++++    R + +W  M+           A K L +     + LG A  + + + C 
Sbjct: 196 RQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCK 255

Query: 255 S---IDSAREI-----------------------------------FDRMRQKNVISWSA 276
           S   ++  REI                                   FD+M  K+V+SW+ 
Sbjct: 256 SPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTI 315

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +I  Y   G  + A ++F  M    V+PNRIT++++L A S    ++ G  + S +  + 
Sbjct: 316 IIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHIL-NA 374

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-EM 395
               D+   T +V +  + G   +  ++ E + V +D   W  ++G      N + A E+
Sbjct: 375 GHESDLAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGGLAEGGNWEEASEI 433

Query: 396 AAKSLLERQPQNPGHYVLLSNVYAN 420
             +   E    N   YV+L N   N
Sbjct: 434 YHQMQREGMMPNKITYVILLNACVN 458


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/573 (41%), Positives = 341/573 (59%), Gaps = 58/573 (10%)

Query: 62  FFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           ++ S L SC   + I   +Q+HA+I   G   N ++A KL+ +Y +  +LT+AH LF+ +
Sbjct: 3   YYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRI 62

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            +R+   W+VM+ G++    +      + +    G+  D +T PFV++AC     +  G+
Sbjct: 63  SKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGK 122

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM------------------- 219
            IH  V++SGL+ D FV AAL+DMYAKC  ++ ARQ+FD++                   
Sbjct: 123 KIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNG 182

Query: 220 ------------------PTRDLVTWTVMIGANKFLL-----------------DVILGT 244
                             PT      ++   A+  LL                 +  + T
Sbjct: 183 QPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKT 242

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           A++DMYAK GS++ AR +F+ + +K V+SW+AMI  Y  HG   +ALDLF  M   +VLP
Sbjct: 243 ALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLP 301

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           + ITFV +L ACSH GL+ EG   F SM  DF + P V+HYTCM+DLLG  GRL+EA KL
Sbjct: 302 DHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKL 361

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I  M VE D G+WGALL +C+IH NV++ E+A + L+E +P + G+YV+LSN+YA AG+W
Sbjct: 362 IMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKW 421

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
             VA++RDLM  + LKK    +WIEV NK+H F   D++HP+SE IY  L    + ++ A
Sbjct: 422 DGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEA 481

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY P      HDV+++ KV  +  HSE+LAIAFGLI+T  GT + I+KNLR+C DCH  I
Sbjct: 482 GYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAI 541

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S IT R I +RD NR+HHF+ G CSC D+W
Sbjct: 542 KFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/554 (41%), Positives = 336/554 (60%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++H  +V GG   ++ V   L+ +YA    L DAH +F+ + +++ VSW+ ++ G+  V 
Sbjct: 133 KIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVG 192

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            F    + FR  +   +  DS+T+  V+ AC    D+  G  IH  +++ G+  + FV  
Sbjct: 193 KFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGT 252

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           +LVDMYAKC  ++ AR +FD MP +D+V+W  M                           
Sbjct: 253 SLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKP 312

Query: 231 --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                         +GA             N+FL + +LGTA+ID+YAKCGS+  A E+F
Sbjct: 313 DCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVF 372

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             M++K+ + W+A+I+    +G  K +  LF  +    + P+  TF+ LL  C+H GLV+
Sbjct: 373 KGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVD 432

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG R F+SM+  F++ P ++HY CMVDLLGRAG LDEA +LI +M +E +  +WGALLGA
Sbjct: 433 EGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGA 492

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CRIH++  LAE+A K L+E +P N G+YVLLSN+Y+   +W + AK+R  M  +R++K P
Sbjct: 493 CRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPP 552

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +WIEV+  +H+F VGD  HP SE+IY  L  L++K+++AGY+P T+F L D++EE K 
Sbjct: 553 GCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKE 612

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLAIAFGLI+      IR++KNLRVCGDCH  IK +S+IT R I VRD NRF
Sbjct: 613 HFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRF 672

Query: 564 HHFEGGACSCRDYW 577
           H F  G+CSC DYW
Sbjct: 673 HCFREGSCSCNDYW 686



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 166/336 (49%), Gaps = 60/336 (17%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+ +K+ +   W+ M+ G      F +  E +      G   +++T PFV++AC    D
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--- 230
           + +G  IH +V+K G D D FV  +LV +YAKC  ++DA ++FD +P +++V+WT +   
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 231 -IGANKF--------------------------------------------------LLD 239
            IG  KF                                                  + +
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRN 247

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V +GT+++DMYAKCG+++ AR +FD M +K+++SW AMI  Y  +G  K+A+DLF  M  
Sbjct: 248 VFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR 307

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD--DFAVRPDVKHYTCMVDLLGRAGR 357
             V P+  T V +L AC+  G +E G    S + D  +F   P +   T ++DL  + G 
Sbjct: 308 ENVKPDCYTVVGVLSACARLGALELG-EWVSGLVDRNEFLYNPVLG--TALIDLYAKCGS 364

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +  A ++ + M  EKD  +W A++    ++  V ++
Sbjct: 365 MSRAWEVFKGMK-EKDRVVWNAIISGLAMNGYVKIS 399


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/581 (42%), Positives = 335/581 (57%), Gaps = 66/581 (11%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  ++ SC  +  +   RQ H Q +  G   +L V++ L+ +Y+    L DA  LF+ + 
Sbjct: 155 FPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS 214

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI--RCGMQ------LDSYTLPFVIRACRDR 171
            R+ VSW+ M+ G+ +  D       F+EF+    G +      +D   +  V+ AC   
Sbjct: 215 HRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRV 274

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            +  +   +H  ++K G + D  V   L+D YAKC  +  +R++FD M  RD+++W  +I
Sbjct: 275 SEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSII 334

Query: 232 GA-------------------------NKFLLDVIL------------------------ 242
                                      N   L  +L                        
Sbjct: 335 AVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGL 394

Query: 243 ------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                 GT++IDMY KCG ++ AR+ FDRMR+KNV SWSAM+A YG HG  K+AL++F  
Sbjct: 395 ESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYE 454

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M  + V PN ITFVS+L ACSH GL+EEG   F +M  +F V P V+HY CMVDLLGRAG
Sbjct: 455 MNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAG 514

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            L EA  LI+ M +  D  +WGALLGACR+HKNVDL E++A+ L E  P+N G+YVLLSN
Sbjct: 515 YLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSN 574

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA+AGRW+DV ++R LM    L K PG++ ++++ ++H F VGD  HPQ E+IY  L  
Sbjct: 575 IYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEK 634

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           LS KL+  GY+PD    LHDV  E K   L  HSEKLA+AFG++ T  GT I I+KNLRV
Sbjct: 635 LSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRV 694

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCH+ IK +S I  R I+VRD+ RFHHF  G CSC DYW
Sbjct: 695 CGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 113 ALFNGMKERDSV-SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
            LFN   ++ +V SW+ ++   ++  D +     F    +  ++ +  T P  I++C   
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            D+  GR  H   L  G + D FV +ALVDMY+KC  + DAR LFD++  R++V+WT MI
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-----HTGLV 322
           + NV SW+++IA     G   +AL  F  M    + PNR TF   + +CS     H+G  
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 173

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
                L       F   PD+   + +VD+  + G L +A  L + +S
Sbjct: 174 AHQQALI------FGFEPDLFVSSALVDMYSKCGELRDARTLFDEIS 214


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/556 (43%), Positives = 328/556 (58%), Gaps = 62/556 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS-K 135
           ++VH  I   G    + V N LL +Y     L +A  LF+ M ER+ VSW+ M+  +S K
Sbjct: 75  KRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNK 134

Query: 136 VAD-FINCF-ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           + D  + C    FRE +R  M    +T   V+RAC    ++   R +H  ++K+GL+ D 
Sbjct: 135 LNDKALKCLILMFREGVRPNM----FTYSSVLRACDGLPNL---RQLHCGIIKTGLESDV 187

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT------------------------- 228
           FV +AL+D+Y+K   +D+A  +FD+MPTRDLV W                          
Sbjct: 188 FVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRA 247

Query: 229 ---------------------------VMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                      V +   KF  D+IL  A+IDMY KCGS++ A  
Sbjct: 248 GFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANS 307

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F RM +K+VISWS M+A    +G  ++AL+LF  M  S   PN IT + +L+ACSH GL
Sbjct: 308 AFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGL 367

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           VE+G   F SM   F V P  +HY C++DLLGRAGRLDEA+KLI  M  E D   W  LL
Sbjct: 368 VEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLL 427

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+H+NVDLA  AAK ++E +P++ G Y+LLSN+YAN  RW+DVA++R  MT R ++K
Sbjct: 428 GACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRK 487

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +WIEV+ +IH F +GD++HP+ EEI + L  L E++   GY+PDTNF L D++ E 
Sbjct: 488 TPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQ 547

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K  +L  HSEKLAI FGL+       +RI KNLR+CGDCH F K VS +  R I++RD  
Sbjct: 548 KEDSLRYHSEKLAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPI 607

Query: 562 RFHHFEGGACSCRDYW 577
           R+HHF+ G CSC DYW
Sbjct: 608 RYHHFQDGVCSCGDYW 623



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 156/363 (42%), Gaps = 83/363 (22%)

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G+  D+ T   +I+ C  R  +  G+ +H+ +   G +   FV   L++MY K  +++
Sbjct: 48  RHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLE 107

Query: 211 DARQLFDQMPTRDLVTWTVMIGA-----------------------NKFLL--------- 238
           +A  LFD+MP R++V+WT MI A                       N F           
Sbjct: 108 EAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDG 167

Query: 239 ------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                             DV + +A+ID+Y+K   +D+A  +FD M  ++++ W+++I  
Sbjct: 168 LPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGG 227

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-------------LR 327
           +  +  G +AL+LF  M  +  L ++ T  S+L AC+   L+E G             L 
Sbjct: 228 FAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLI 287

Query: 328 LFSSMWDDFA---------------VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L +++ D +                V  DV  ++ MV  L + G   +AL+L ESM    
Sbjct: 288 LNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESG 347

Query: 373 DEGLWGALLG---ACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDV 427
               +  +LG   AC     V+      +S+ +    +PG  HY  L ++   AGR  + 
Sbjct: 348 SRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEA 407

Query: 428 AKI 430
            K+
Sbjct: 408 VKL 410


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/572 (40%), Positives = 326/572 (56%), Gaps = 57/572 (9%)

Query: 63   FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            F S L  C+N   +   +Q+H +I   G   ++ + N L+ +Y    +L DA  +F+ ++
Sbjct: 535  FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 120  ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             RD +SW+ M+GG +   + +   E F +    G +    T   +++ C     +  G+ 
Sbjct: 595  HRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKK 654

Query: 180  IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
            +   +L SG ++D  V  AL+  Y+K   + DAR++FD+MP+RD+V+W  +I        
Sbjct: 655  VIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGL 714

Query: 234  ------------------NKFLL------------------------------DVILGTA 245
                              NKF                                DV +G A
Sbjct: 715  GQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAA 774

Query: 246  VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
            +I MYAKCGS   A+E+FD + +KNV++W+AMI AY  HG   KAL  F  M    + P+
Sbjct: 775  LISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPD 834

Query: 306  RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
              TF S+L AC+H GLV EG ++FSSM  ++ V P ++HY C+V LLGRA R  EA  LI
Sbjct: 835  GSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLI 894

Query: 366  ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
              M    D  +W  LLGACRIH N+ LAE AA + L+   +NP  Y+LLSNVYA AGRW 
Sbjct: 895  NQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWD 954

Query: 426  DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
            DVAKIR +M  R ++K PG +WIEV+N IH+F   D +HP++ EIY  L  LS ++E AG
Sbjct: 955  DVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAG 1014

Query: 486  YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
            Y PDT   LHD+ +  +  +L +HSE+LAIA+GLI TP GT IRI KNLR+CGDCH+  K
Sbjct: 1015 YFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASK 1074

Query: 546  HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             +S +  R II RD+NRFH F+ G CSC DYW
Sbjct: 1075 FISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 187/382 (48%), Gaps = 59/382 (15%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+  L +C N       + +H  I+  G  +N  +AN L+ +Y    +L +A  +F G +
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ 493

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD +SW+ M+ G ++   +   ++ F+E     ++ D+ T   V+  C++ + + +G+ 
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           IH  + +SGL +D  +  AL++MY +C  + DAR +F  +  RD+++WT MIG       
Sbjct: 554 IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGE 613

Query: 234 --------------------------------------NKFLLDVILGT----------A 245
                                                  K ++  IL +          A
Sbjct: 614 DMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA 673

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I  Y+K GS+  ARE+FD+M  ++++SW+ +IA Y  +G G+ A++    M    V+PN
Sbjct: 674 LISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPN 733

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           + +FVSLL ACS    +EEG R+ + +     ++ DV+    ++ +  + G   EA ++ 
Sbjct: 734 KFSFVSLLNACSSFSALEEGKRVHAEIVKR-KLQGDVRVGAALISMYAKCGSQGEAQEVF 792

Query: 366 ESMSVEKDEGLWGALLGACRIH 387
           +++ +EK+   W A++ A   H
Sbjct: 793 DNI-IEKNVVTWNAMINAYAQH 813



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 197/438 (44%), Gaps = 64/438 (14%)

Query: 63  FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +++ L +C   R + + +++HAQ+V      ++ ++N L+ +Y   +++ DAH +F  M 
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD +SW+ ++  +++       F+ F E    G   +  T   ++ AC    ++  G+ 
Sbjct: 90  RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKK 149

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFL 237
           IH  ++K+G   D  V  +L+ MY KC  +  ARQ+F  +  RD+V++  M+G  A K  
Sbjct: 150 IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAY 209

Query: 238 LDVILG----------------------------------------------------TA 245
           +   LG                                                    TA
Sbjct: 210 VKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTA 269

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ M  +CG +DSA++ F     ++V+ ++A+IAA   HG   +A + +  M S  V  N
Sbjct: 270 LVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALN 329

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           R T++S+L ACS +  +E G  + S + +D     DV+    ++ +  R G L +A +L 
Sbjct: 330 RTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELF 388

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAE-MAAKSLLERQPQNPGHYVLLS--NVYANAG 422
            +M  ++D   W A++      +  D  E M     ++ +   PG    L   +  AN+ 
Sbjct: 389 YTMP-KRDLISWNAIIAG--YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSS 445

Query: 423 RWQDVAKIRDLMTRRRLK 440
            + D   I + + R  +K
Sbjct: 446 AYADGKMIHEDILRSGIK 463



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 160/362 (44%), Gaps = 56/362 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   V  G  +++ V   L+ +      +  A   F G  +RD V ++ ++   ++ 
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +  FE +      G+ L+  T   ++ AC   K +  G+LIH  + + G   D  + 
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+ MYA+C  +  AR+LF  MP RDL++W  +I                         
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 234 ---------------------NKFLLDVILGTAV----------IDMYAKCGSIDSAREI 262
                                 K + + IL + +          ++MY +CGS+  A+ +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+  + ++VISW++MIA +  HG  + A  LF  M +  + P+ ITF S+L  C +   +
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E G ++   + +   ++ DV     ++++  R G L +A  +  S+   +D   W A++G
Sbjct: 549 ELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMIG 606

Query: 383 AC 384
            C
Sbjct: 607 GC 608


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 325/556 (58%), Gaps = 55/556 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            + +H   V     ++L     L+ +YA     T A   FN M  RD V+W+ ++ G++++
Sbjct: 450  KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQI 509

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             D  N  + F +     +  D+ T+  V+ AC    D+  G  IH +++K G + D  V 
Sbjct: 510  GDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVK 569

Query: 197  AALVDMYAKCKVIDDARQL--------------------------------FDQMPTRDL 224
             AL+DMYAKC  +  A  L                                F QM   + 
Sbjct: 570  NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF 629

Query: 225  ----VTWTVMIGANK-------------------FLLDVILGTAVIDMYAKCGSIDSARE 261
                VT+  ++ A                     FL + ++G ++IDMYAKCG +D + +
Sbjct: 630  HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 689

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +F+ M  K+ +SW+AM++ Y  HG G +A+ LF +M  S+V  + ++FVS+L AC H GL
Sbjct: 690  LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGL 749

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            VEEG ++F SM D + ++PD++HY CMVDLLGRAG  DE L  I+ M VE D G+WGALL
Sbjct: 750  VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 809

Query: 382  GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            G+CR+H NV L E+A   L++ +P+NP H+V+LS++YA +GRW D  K R  M    LKK
Sbjct: 810  GSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKK 869

Query: 442  IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             PG +W+E++NK+H F VGD +HPQ E ++ +  TL EK+E  GY+PD +  L +V+EE 
Sbjct: 870  TPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEED 929

Query: 502  KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
            K   LYSHSE+LAI F L+ TP G+ I+I+KNLRVC DCH+  K +S IT R IIVRDA 
Sbjct: 930  KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDAT 989

Query: 562  RFHHFEGGACSCRDYW 577
            RFHHFE G CSC DYW
Sbjct: 990  RFHHFEDGICSCNDYW 1005



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 183/407 (44%), Gaps = 56/407 (13%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L SC+++  + Q+HAQI+  G   +  + + L+ +Y+L      A ++F+       + W
Sbjct: 39  LSSCKHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILW 97

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + M+  +++   +    E +   +  G++ D YT  FV++AC    ++  G   H  + +
Sbjct: 98  NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------- 232
            GL+ D F+ A LVDMY+K   +  AR++FD+MP RD+V W  MI               
Sbjct: 158 RGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDF 217

Query: 233 -----------ANKFLLDVILG---------------------------TAVIDMYAKCG 254
                      ++  LL++  G                             +ID+Y+KCG
Sbjct: 218 FRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCG 277

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +D AR +FD+M  ++ +SW  M+A Y ++G   + L+LF  M    V  N+++ VS   
Sbjct: 278 DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFL 337

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           A + T  +E+G  +         +  D+   T ++ +  + G  ++A +L   +   +D 
Sbjct: 338 AAAETIDLEKGKEIHGCALQQ-RIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ-GRDL 395

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             W A++ A  +        ++    ++ Q   P    L+S + A A
Sbjct: 396 VAWSAIIAAL-VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 167/385 (43%), Gaps = 57/385 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   +     ++++VA  L+ +YA       A  LF G++ RD V+WS ++    + 
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    F+E     M+ +  TL  ++ AC D   + +G+ IH   +K+ +D D    
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
            ALV MYAKC     A   F++M +RD+VTW  +I                         
Sbjct: 469 TALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 233 -----------ANKFLLDVILGT-------------------AVIDMYAKCGSIDSAREI 262
                      A   L D+  GT                   A+IDMYAKCGS+ SA  +
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 263 FDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F++    K+ ++W+ +IAAY  +G  K+A+  F  M      PN +TFVS+L A ++   
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             EG+  F +         +      ++D+  + G+LD + KL   M   KD   W A+L
Sbjct: 649 FREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD-HKDTVSWNAML 706

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQ 406
               +H + D A      + E Q Q
Sbjct: 707 SGYAVHGHGDRAIALFSLMQESQVQ 731



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 173/393 (44%), Gaps = 67/393 (17%)

Query: 52  CQFTRSVDPK--FFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHK 106
           C   + ++P    F   L +C     +++    H +I   G   ++ +   L+ +Y+   
Sbjct: 119 CMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMG 178

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            L  A  +F+ M +RD V+W+ M+ G S+  D     + FR     G++  S +L  +  
Sbjct: 179 DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
                 +I + R IH  V +   D    V   L+D+Y+KC  +D AR++FDQM  +D V+
Sbjct: 239 GICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 227 WTVMIGA---NKFLLDVI------------------------------------------ 241
           W  M+     N   ++V+                                          
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 242 ---------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                    + T ++ MYAKCG  + A+++F  ++ +++++WSA+IAA    G  ++AL 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG--LRLFSSMWDDFAVRPDVKHYTCMVD 350
           LF  M + ++ PNR+T +S+L AC+   L++ G  +  F+   D   +  D+   T +V 
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD---MDSDLSTGTALVS 473

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +  + G    AL     MS  +D   W +L+  
Sbjct: 474 MYAKCGFFTAALTTFNRMS-SRDIVTWNSLING 505


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/555 (41%), Positives = 324/555 (58%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H+++   G  +++ V N L+ +Y+   ++ DA  +F+ M  +D +SW+ M+GG +K 
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKS 407

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    ++E  + G++ +  T   ++ AC     +  GR IH  V+++GL  D  V 
Sbjct: 408 GFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG 467

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLV------------------------------- 225
             LV+MY+ C  + DARQ+FD+M  RD+V                               
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 527

Query: 226 ----TWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
               T+  M+ A                     F  D  +G A++  YAKCGS   A  +
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F++M ++NVISW+A+I     HG+G+ AL LF  M    V P+ +TFVSLL ACSH GL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG R F SM  DFA+ P ++HY CMVDLLGRAG+LDEA  LI++M  + +  +WGALLG
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH NV +AE AA+S L+    N   YV LS++YA AG W   AK+R LM +R + K 
Sbjct: 708 ACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 767

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WI+V +K+H F   D +HPQSE+IY  L  L+  +++ GY+PDT   +HDVDE  K
Sbjct: 768 PGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEK 827

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              +  HSE+LAIA+GLI+TP GT I I KNLRVC DCH+  K +S I  R II RD NR
Sbjct: 828 ENAVCHHSERLAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNR 887

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 888 FHHFKDGVCSCGDYW 902



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 205/437 (46%), Gaps = 62/437 (14%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    +S L SC++   +   R++H Q +  G L ++ VAN +L +YA   ++ +A  +F
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M+++  VSW++ +GG++        FE F++  + G+  +  T   V+ A      + 
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G+ +H  +L +G + D  V  ALV MYAKC    D RQ+F+++  RDL+ W  MIG   
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 234 ----------------------NKFLLDVILG---------------------------- 243
                                 NK    ++L                             
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
              A+I MY++CGSI  AR +FD+M +K+VISW+AMI      G G +AL ++  M  + 
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PNR+T+ S+L ACS    +E G R+   +  +  +  D      +V++    G + +A
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQV-VEAGLATDAHVGNTLVNMYSMCGSVKDA 483

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH--YVLLSNVYA 419
            ++ + M +++D   + A++G    H N+    +     L+ +   P    Y+ + N  A
Sbjct: 484 RQVFDRM-IQRDIVAYNAMIGGYAAH-NLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 541

Query: 420 NAGRWQDVAKIRDLMTR 436
           N+G  +   +I  L+ +
Sbjct: 542 NSGSLEWAREIHTLVRK 558



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 203/480 (42%), Gaps = 108/480 (22%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           S D    +   +  +++   RQVH  I+   T+ +    N L+ +Y    ++ +A  ++ 
Sbjct: 23  SSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWK 82

Query: 117 GMK--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            +   ER   SW+ MV G+ +        +  R+  + G+  D  T+   + +C+    +
Sbjct: 83  KLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGAL 142

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             GR IH   +++GL  D  V   +++MYAKC  I++AR++FD+M  + +V+WT+ IG  
Sbjct: 143 EWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGY 202

Query: 234 --------------------------------NKFLLDVIL--GTAV------------- 246
                                           N F     L  G AV             
Sbjct: 203 ADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDT 262

Query: 247 ------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                 + MYAKCGS    R++F+++  +++I+W+ MI      G  ++A +++  M   
Sbjct: 263 AVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQRE 322

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFS------------------SMWD-------- 334
            V+PN+IT+V LL AC ++  +  G  + S                  SM+         
Sbjct: 323 GVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDA 382

Query: 335 ----DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC--- 384
               D  VR DV  +T M+  L ++G   EAL + + M    VE +   + ++L AC   
Sbjct: 383 RLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSP 442

Query: 385 -------RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
                  RIH+ V  A +A  + +            L N+Y+  G  +D  ++ D M +R
Sbjct: 443 AALEWGRRIHQQVVEAGLATDAHVGN---------TLVNMYSMCGSVKDARQVFDRMIQR 493



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 127/287 (44%), Gaps = 58/287 (20%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G Q++S     +++ C + KD+V GR +H  +++     DQ+   AL++MY +C  I++A
Sbjct: 18  GAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEA 77

Query: 213 RQLFDQMP--TRDLVTWTVMI------GANKFLLDVILG----------TAVIDMYAKC- 253
           RQ++ ++    R + +W  M+      G  +  L ++            T ++   + C 
Sbjct: 78  RQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCK 137

Query: 254 --GSIDSAREI-----------------------------------FDRMRQKNVISWSA 276
             G+++  REI                                   FD+M +K+V+SW+ 
Sbjct: 138 SPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTI 197

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
            I  Y   G+ + A ++F  M    V+PNRIT++S+L A S    ++ G  + S + +  
Sbjct: 198 TIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNA- 256

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
               D    T +V +  + G   +  ++ E + V +D   W  ++G 
Sbjct: 257 GHESDTAVGTALVKMYAKCGSYKDCRQVFEKL-VNRDLIAWNTMIGG 302


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/572 (40%), Positives = 334/572 (58%), Gaps = 58/572 (10%)

Query: 63  FISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S L +C     + Q RQ+H +I+  G +T+  V   LL +YA   +L DA  +F  + 
Sbjct: 410 FMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS 469

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +++ V+W+ M+  + +   + N   TF+  ++ G++ DS T   ++  C+    + +G+ 
Sbjct: 470 KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKW 529

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GA 233
           +  +++++G + D  +  ALV M+  C  +  A  LF+ MP RDLV+W  +I      G 
Sbjct: 530 VQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGE 589

Query: 234 NKFLLD------------------------------------------------VILGTA 245
           N+F  D                                                V++GT 
Sbjct: 590 NQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTG 649

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I MY KCGSID A  +F  + +KNV SW++MI  Y  HG+GK+AL+LF  M    V P+
Sbjct: 650 LISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPD 709

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            ITFV  L AC+H GL++EGL  F SM  DF + P ++HY CMVDL GRAG L EA++ I
Sbjct: 710 WITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFI 768

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
             M V+ D  LWGALLGAC++H +V+LAE  A+  LE  P + G YV+LSN+YA AG W+
Sbjct: 769 NKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWK 828

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           +V K+R +M  R + K PG +WIEV+ ++H F   D THPQ EEI+  L  L  +++  G
Sbjct: 829 EVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLG 888

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PDT + LHDV++  K   L  HSE+LAIA+GL+ TP  T I I KNLRVCGDCH+  K
Sbjct: 889 YVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATK 948

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S IT+R II RD+NRFHHF+ G CSC D+W
Sbjct: 949 LISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 185/387 (47%), Gaps = 56/387 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +N+    ++H  I       ++ + N L+ +YA       A  +F+ M ++D  SW++++
Sbjct: 118 KNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLL 177

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           GG+ +   +   F    + ++ G++ D YT  +++ AC D K++  G  +  ++L +G D
Sbjct: 178 GGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWD 237

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLLD 239
            D FV  AL++M+ KC  +DDA ++F+ +P RDL+TWT MI             N F + 
Sbjct: 238 TDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVM 297

Query: 240 VILG-----TAVIDMYAKCG---SIDSAREIFDRMRQ----------------------- 268
              G      A + +   C    +++  + +  RM++                       
Sbjct: 298 EEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSM 357

Query: 269 ------------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
                       +NV+SW+AMIA +  HG+ ++A   F  M+ S + PNR+TF+S+L AC
Sbjct: 358 EDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGAC 417

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S    +++G ++   +     +  D +  T ++ +  + G L +A  + E +S +++   
Sbjct: 418 SRPSALKQGRQIHDRIIKAGYITDD-RVRTALLSMYAKCGSLMDARNVFERIS-KQNVVA 475

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLER 403
           W A++ A   H+  D A    ++LL+ 
Sbjct: 476 WNAMITAYVQHEKYDNAVATFQALLKE 502



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 169/382 (44%), Gaps = 59/382 (15%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F+  L +C   +N+ +  ++ + I+  G  T+L V   L+ ++     + DA  +F
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           N +  RD ++W+ M+ G ++   F      F+     G+Q D      +++AC   + + 
Sbjct: 264 NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALE 323

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G+ +H  + + GLD + +V  AL+ MY KC  ++DA ++F+ +  R++V+WT MI    
Sbjct: 324 QGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383

Query: 234 ----------------------NKFLLDVILG---------------------------- 243
                                 N+     ILG                            
Sbjct: 384 QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             TA++ MYAKCGS+  AR +F+R+ ++NV++W+AMI AY  H +   A+  F  +L   
Sbjct: 444 VRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEG 503

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+  TF S+L  C     +E G +   S+        D+     +V +    G L  A
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA 562

Query: 362 LKLIESMSVEKDEGLWGALLGA 383
           + L   M  E+D   W  ++  
Sbjct: 563 MNLFNDMP-ERDLVSWNTIIAG 583



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 149/303 (49%), Gaps = 56/303 (18%)

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           +Q+   T   +++ C   K++  G  IH+ +  S +  D F+   L+ MYAKC   + A+
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 214 QLFDQMPTRDLVTWTVMIGA------------------------NKF------------- 236
           Q+FD+MP +D+ +W +++G                         +K+             
Sbjct: 160 QIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAK 219

Query: 237 -------LLDVIL----------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                  L  +IL          GTA+I+M+ KCG +D A ++F+ + ++++I+W++MI 
Sbjct: 220 NVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMIT 279

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
               H Q K+A +LF +M    V P+++ FVSLL AC+H   +E+G R+ + M  +  + 
Sbjct: 280 GLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM-KEVGLD 338

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
            ++   T ++ +  + G +++AL++  ++   ++   W A++     H  ++ A +    
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDALEVF-NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 400 LLE 402
           ++E
Sbjct: 398 MIE 400


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/550 (42%), Positives = 330/550 (60%), Gaps = 55/550 (10%)

Query: 83  IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142
           + +  +L + +    L+  Y L   L DA  LF  +  RD+VSW+ M+ G+++   F   
Sbjct: 189 VFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEA 248

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
              F+E  R  +  +  T+  V+ AC     + +G  +   +   GL  +  +  AL+DM
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 203 YAKCKVIDDARQLFDQMPTRDL-----------------------------------VTW 227
           Y+KC  +D AR LF+ +  +D+                                   VT+
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 228 TVMIGANKFLLDVILG--------------------TAVIDMYAKCGSIDSAREIFDRMR 267
             ++ A  +L  + LG                    T++IDMYAKCG+I++A+++F  M+
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
            K++ SW+AMI+    HG    AL+LF  M      P+ ITFV +L ACSH GLVE G +
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            FSSM +D+ + P ++HY CM+DLLGRAG  DEA  L+++M ++ D  +WG+LLGACR+H
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
            NV+L E AAK L E +P+NPG YVLLSN+YA AGRW DVA+IR  +  + +KK+PG + 
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSS 608

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           IEV++ +H+F VGD  H QS++IY+ML  + + LE AG++PDT+  L+D+DEE K G+L 
Sbjct: 609 IEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLS 668

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLAIAFGLI+T   T IRI+KNLRVCG+CHS IK +S I  R II RD NRFHHF+
Sbjct: 669 HHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728

Query: 568 GGACSCRDYW 577
            G+CSC DYW
Sbjct: 729 DGSCSCMDYW 738



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 172/343 (50%), Gaps = 27/343 (7%)

Query: 50  PDCQFTRSVDPKF-------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102
           P   F  + DP +        ++ L +C++   ++Q+H+QI+  G        +KL+   
Sbjct: 15  PTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFC 74

Query: 103 ALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           A+     L+ A  LF  +++ +   W+ M+ G S  +  +   + +   + CG++ +SYT
Sbjct: 75  AISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYT 134

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
            PF++++C        G+ IH  VLK GL+ D FV  +L++MYA+   +  A  +F +  
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194

Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
            RD V++                TA+I  Y   G +D AR +F+ +  ++ +SW+AMIA 
Sbjct: 195 LRDAVSF----------------TALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAG 238

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           Y   G+ ++AL  F  M  + V PN  T V++L AC+ +G +E G     S  +D  +  
Sbjct: 239 YAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGS 297

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +++    ++D+  + G LD+A  L E +  EKD   W  ++G 
Sbjct: 298 NLRLVNALIDMYSKCGDLDKARDLFEGI-CEKDIISWNVMIGG 339


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/555 (42%), Positives = 321/555 (57%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VHAQ +  G + ++ VA  L+ +Y    ++  A  +F+ MK RD VSW+VM+ G+++ 
Sbjct: 283 KAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAEN 342

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           ++  + F  F      G+Q D  T   +I AC    D+ + R IH  V+++G   D  V 
Sbjct: 343 SNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVD 402

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------NKFL 237
            ALV MYAKC  I DARQ+FD M  RD+V+W+ MIGA                   N   
Sbjct: 403 TALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVE 462

Query: 238 LDVI-----------------------------------LGTAVIDMYAKCGSIDSAREI 262
            DV+                                   +G A+I+M  K GSI+ AR I
Sbjct: 463 PDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYI 522

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M Q++V++W+ MI  Y  HG  ++ALDLF  ML  R  PN +TFV +L ACS  G V
Sbjct: 523 FENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFV 582

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG R FS + D   + P ++ Y CMVDLLGRAG LDEA  LI  M ++ +  +W  LL 
Sbjct: 583 EEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLA 642

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRI+ N+D+AE AA+  L  +P +   YV LS++YA AG W++VAK+R +M  R ++K 
Sbjct: 643 ACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKE 702

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G TWIEVE K+H F V D +HPQ+ EIY  L  L   ++  GYIP T   LH+V E+ K
Sbjct: 703 QGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEK 762

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              +  HSEKLAIA+G+++ P G  IRI KNLRVCGDCHS  K +S +T R II RDA+R
Sbjct: 763 EEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASR 822

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 823 FHHFKNGVCSCGDYW 837



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 195/405 (48%), Gaps = 65/405 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++ HAQ++  G +++  +   L+ +Y    ++  A  +F+G+ +RD  +++VM+GG++K 
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D    F+ F    + G + +  +   ++  C   + +  G+ +H   + +GL  D  V 
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------NKFLL---------- 238
            AL+ MY  C  I+ AR++FD+M  RD+V+WTVMI          + F L          
Sbjct: 302 TALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQ 361

Query: 239 -DVILGTAVIDMYAKCGSIDSAREI----------------------------------- 262
            D I    +I+  A    +  AREI                                   
Sbjct: 362 PDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQV 421

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M +++V+SWSAMI AY  +G G++A + F +M  + V P+ +T+++LL AC H G +
Sbjct: 422 FDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGAL 481

Query: 323 EEGLRLFSSMWDDFAVRPD-VKHY---TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           + G+ +++      A++ D V H      ++++  + G ++ A  + E+M V++D   W 
Sbjct: 482 DLGMEIYTQ-----AIKADLVSHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWN 535

Query: 379 ALLGACRIHKNVDLA-EMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            ++G   +H N   A ++  + L ER   N   +V + +  + AG
Sbjct: 536 VMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAG 580



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 173/383 (45%), Gaps = 59/383 (15%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D + ++     C   R+    +QV   I+  G   N+   N L+ ++++   + +A   
Sbjct: 59  IDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQT 118

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ ++ +  V+W+ ++ G++++      F  FR+ +   M+    T   V+ AC     +
Sbjct: 119 FDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGL 178

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
            +G+  H  V+K G   D  +  ALV MY K   +D ARQ+FD +  RD+ T+ VMIG  
Sbjct: 179 KLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGY 238

Query: 234 ----------------------------------------------------NKFLLD-V 240
                                                               N  L+D V
Sbjct: 239 AKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDV 298

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + TA+I MY  CGSI+ AR +FD+M+ ++V+SW+ MI  Y  +   + A  LF  M   
Sbjct: 299 RVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEE 358

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+RIT++ ++ AC+ +  +     + S +        D+   T +V +  + G + +
Sbjct: 359 GIQPDRITYIHIINACASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKD 417

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
           A ++ ++MS  +D   W A++GA
Sbjct: 418 ARQVFDAMS-RRDVVSWSAMIGA 439


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/548 (41%), Positives = 335/548 (61%), Gaps = 33/548 (6%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FI  + +   + Q+ Q+HAQI      +N  V  +L+      K+L  A ++F      +
Sbjct: 43  FIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPN 102

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
              ++ ++ G ++ + F      F   +R  ++ D  TLPFV+++     D+ +GR +H 
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD----LVTWT---------- 228
            V+K GL+ D FV  +LVDMY K   +    QLFD+ P R+    ++ W           
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPNDLTVV 222

Query: 229 ------VMIGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
                   IGA             N F L+  +GTA++DMYAKCG+I SA  +F   + K
Sbjct: 223 SALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGK 282

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++++WS MI  +  HG   +AL  F  M S+ + P+ + F+++L ACSH+G V++GL  F
Sbjct: 283 DLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFF 342

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
            SM  D+++ P +KHYT +VDLLGRAGRLDEAL  I+SM +  D  +WGAL  ACR HKN
Sbjct: 343 ESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKN 402

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIE 449
           +++AE+ A+ LL+ +P++PG YV LSNVYA  GRW+DV ++R LM  R ++K PGW++IE
Sbjct: 403 IEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIE 462

Query: 450 VENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSH 509
           VE ++H F  GD  H ++EEI   L  ++   +  GY+P+T + LH+++EE K   L SH
Sbjct: 463 VEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSH 522

Query: 510 SEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGG 569
           SEKLA+AFGLI+T  G+ IRI+KNLRVCGDCHS +K+ S ++RR II+RD  RFHHF+ G
Sbjct: 523 SEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDG 582

Query: 570 ACSCRDYW 577
            CSC DYW
Sbjct: 583 TCSCGDYW 590


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/556 (41%), Positives = 324/556 (58%), Gaps = 55/556 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            + +H   V     ++L     L+ +YA     T A   FN M  RD V+W+ ++ G++++
Sbjct: 450  KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQI 509

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             D  N  + F +     +  D+ T+  V+ AC    D+  G  IH +++K G + D  V 
Sbjct: 510  GDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVK 569

Query: 197  AALVDMYAKCKVIDDARQL--------------------------------FDQMPTRDL 224
             AL+DMYAKC  +  A  L                                F QM   + 
Sbjct: 570  NALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENF 629

Query: 225  ----VTWTVMIGANK-------------------FLLDVILGTAVIDMYAKCGSIDSARE 261
                VT+  ++ A                     FL + ++G ++IDMYAKCG +  + +
Sbjct: 630  HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEK 689

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +F+ M  K+ +SW+AM++ Y  HG G +A+ LF +M  S+V  + ++FVS+L AC H GL
Sbjct: 690  LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGL 749

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            VEEG ++F SM D + ++PD++HY CMVDLLGRAG  DE L  I+ M VE D G+WGALL
Sbjct: 750  VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 809

Query: 382  GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            G+CR+H NV L E+A   L++ +P+NP H+V+LS++YA +GRW D  K R  M    LKK
Sbjct: 810  GSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKK 869

Query: 442  IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             PG +W+E++NK+H F VGD +HPQ E ++ +  TL EK+E  GY+PD +  L +V+EE 
Sbjct: 870  TPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEED 929

Query: 502  KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
            K   LYSHSE+LAI F L+ TP G+ I+I+KNLRVC DCH+  K +S IT R IIVRDA 
Sbjct: 930  KEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDAT 989

Query: 562  RFHHFEGGACSCRDYW 577
            RFHHFE G CSC DYW
Sbjct: 990  RFHHFEDGICSCNDYW 1005



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 183/407 (44%), Gaps = 56/407 (13%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L SC+++  + Q+HAQI+  G   +  + + L+ +Y+L      A ++F+       + W
Sbjct: 39  LSSCKHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILW 97

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + M+  +++   +    E +   +  G++ D YT  FV++AC    ++  G   H  + +
Sbjct: 98  NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------- 232
            GL+ D F+ A LVDMY+K   +  AR++FD+MP RD+V W  MI               
Sbjct: 158 RGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDF 217

Query: 233 -----------ANKFLLDVILG---------------------------TAVIDMYAKCG 254
                      ++  LL++  G                             +ID+Y+KCG
Sbjct: 218 FRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCG 277

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +D AR +FD+M  ++ +SW  M+A Y ++G   + L+LF  M    V  N+++ VS   
Sbjct: 278 DVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFL 337

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           A + T  +E+G  +         +  D+   T ++ +  + G  ++A +L   +   +D 
Sbjct: 338 AAAETIDLEKGKEIHGCALQQ-RIDSDILVATPLMVMYAKCGETEKAKQLFWGLQ-GRDL 395

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             W A++ A  +        ++    ++ Q   P    L+S + A A
Sbjct: 396 VAWSAIIAAL-VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 166/385 (43%), Gaps = 57/385 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   +     ++++VA  L+ +YA       A  LF G++ RD V+WS ++    + 
Sbjct: 349 KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    F+E     M+ +  TL  ++ AC D   + +G+ IH   +K+ +D D    
Sbjct: 409 GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
            ALV MYAKC     A   F++M +RD+VTW  +I                         
Sbjct: 469 TALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAIN 528

Query: 233 -----------ANKFLLDVILGT-------------------AVIDMYAKCGSIDSAREI 262
                      A   L D+  GT                   A+IDMYAKCGS+ SA  +
Sbjct: 529 PDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFL 588

Query: 263 FDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F++    K+ ++W+ +IAAY  +G  K+A+  F  M      PN +TFVS+L A ++   
Sbjct: 589 FNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAA 648

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             EG+  F +         +      ++D+  + G+L  + KL   M   KD   W A+L
Sbjct: 649 FREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMD-HKDTVSWNAML 706

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQ 406
               +H + D A      + E Q Q
Sbjct: 707 SGYAVHGHGDRAIALFSLMQESQVQ 731



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 173/393 (44%), Gaps = 67/393 (17%)

Query: 52  CQFTRSVDPK--FFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHK 106
           C   + ++P    F   L +C     +++    H +I   G   ++ +   L+ +Y+   
Sbjct: 119 CMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMG 178

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            L  A  +F+ M +RD V+W+ M+ G S+  D     + FR     G++  S +L  +  
Sbjct: 179 DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
                 +I + R IH  V +   D    V   L+D+Y+KC  +D AR++FDQM  +D V+
Sbjct: 239 GICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 227 WTVMIGA---NKFLLDVI------------------------------------------ 241
           W  M+     N   ++V+                                          
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 242 ---------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                    + T ++ MYAKCG  + A+++F  ++ +++++WSA+IAA    G  ++AL 
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG--LRLFSSMWDDFAVRPDVKHYTCMVD 350
           LF  M + ++ PNR+T +S+L AC+   L++ G  +  F+   D   +  D+   T +V 
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD---MDSDLSTGTALVS 473

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +  + G    AL     MS  +D   W +L+  
Sbjct: 474 MYAKCGFFTAALTTFNRMS-SRDIVTWNSLING 505


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 329/557 (59%), Gaps = 57/557 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVH  ++  G  + + V N ++ +Y+    ++DA A+F+ M+ R++VSW+ M+ GF    
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
             +  FE F      G++L       VI+ C + K++   + +H  V+K+G D D  +  
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT 333

Query: 198 ALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA----------------------- 233
           AL+  Y+KC  IDDA +LF  M   +++V+WT +I                         
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGV 393

Query: 234 --NKFLLDVILG-------------------------------TAVIDMYAKCGSIDSAR 260
             N+F    +L                                +A++ MYAK G+I+SA 
Sbjct: 394 EPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESAN 453

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           E+F R   ++++SW++MI+ Y  HG GKK+L +F  M S  +  + ITF+ ++ AC+H G
Sbjct: 454 EVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAG 513

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           LV EG R F  M  D+ + P ++HY+CMVDL  RAG L++A+ LI  M       +W  L
Sbjct: 514 LVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTL 573

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L ACR+H NV L E+AA+ L+  QPQ+   YVLLSN+YA AG WQ+ AK+R LM  +++K
Sbjct: 574 LAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVK 633

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++WIEV+NK   F  GD +HPQS+ IY  L  LS +L+ AGY PDT + LHDV+EE
Sbjct: 634 KEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEE 693

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSE+LAIAFGLIATP GT I+I+KNLRVCGDCH+ IK +S I  R I+VRD+
Sbjct: 694 HKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDS 753

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+GG+CSC DYW
Sbjct: 754 NRFHHFKGGSCSCGDYW 770



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 165/372 (44%), Gaps = 67/372 (18%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH Q +  G + ++ V   L+ +Y   +++ D   +F+ M+ ++ VSW+ ++ G+ + 
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  + F +    G++ + +T   V+        +  G  +H +V+KSGLD   FV 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
            ++V+MY+K  ++ DA+ +FD M  R+ V+W  MI                         
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 233 ---------------------ANKFLLDVILGTAVIDMYAK---------CGSIDSAREI 262
                                A +    VI   +  D+  K         C  ID A ++
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 263 FDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACSH-T 319
           F  M   +NV+SW+A+I+ Y  +G+  +A++LF  M     V PN  TF S+L AC+  T
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPT 411

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEG 375
             VE+G +  S      +++    +  C    +V +  + G ++ A ++ +   V++D  
Sbjct: 412 ASVEQGKQFHSC-----SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLV 465

Query: 376 LWGALLGACRIH 387
            W +++     H
Sbjct: 466 SWNSMISGYAQH 477



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 92/169 (54%), Gaps = 5/169 (2%)

Query: 215 LFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
           LFD++  + +    +  G   F+ DV +GT+++DMY K  S++    +FD MR KNV+SW
Sbjct: 105 LFDRIVGKQVHCQCIKCG---FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSW 161

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           ++++A Y  +G  ++AL LF  M    + PN  TF ++L   +  G VE+G+++  +M  
Sbjct: 162 TSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV-HTMVI 220

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              +   +     MV++  ++  + +A  + +SM   ++   W +++  
Sbjct: 221 KSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAG 268



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 124/301 (41%), Gaps = 64/301 (21%)

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
           +N F   R   R G   D  +L  V++ C    D ++G+ +H   +K G   D  V  +L
Sbjct: 77  LNLFLGLR---RSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSL 133

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NK 235
           VDMY K + ++D  ++FD+M  +++V+WT ++                          N 
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193

Query: 236 FLLDVIL------------------------------GTAVIDMYAKCGSIDSAREIFDR 265
           F    +L                              G ++++MY+K   +  A+ +FD 
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  +N +SW++MIA +  +G   +A +LF  M    V   +  F +++  C++   +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 326 LRLFSSM---WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            +L   +     DF    D+   T ++    +   +D+A KL   M   ++   W A++ 
Sbjct: 314 KQLHCQVIKNGSDF----DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 383 A 383
            
Sbjct: 370 G 370



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 107/231 (46%), Gaps = 14/231 (6%)

Query: 41  NPRVPMQMGPDCQFTR--SVDP-KFFISSLLSC-----RNIFQIRQVHAQIVAGGTLTNL 92
           N R    M   CQ  R   V+P +F  SS+L+       ++ Q +Q H+  +  G    L
Sbjct: 374 NGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNAL 433

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
            V++ L+ +YA    +  A+ +F    +RD VSW+ M+ G+++        + F E    
Sbjct: 434 CVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSK 493

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG---LDIDQFVCAALVDMYAKCKVI 209
            ++LD  T   VI AC     +  G+   D+++K       ++ + C  +VD+Y++  ++
Sbjct: 494 NLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSC--MVDLYSRAGML 551

Query: 210 DDARQLFDQMPTRDLVT-WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
           + A  L ++MP     T W  ++ A +  L+V LG    +        DSA
Sbjct: 552 EKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSA 602


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 333/564 (59%), Gaps = 56/564 (9%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           +C ++   +++H  ++  G   ++ VA  L+++Y+    + DA  LF+ M  RD  SW+ 
Sbjct: 6   ACGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNA 65

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+ G+ +  +     +   E    G+++D+ T+  V+  C    DI+ G+LIH  V+K G
Sbjct: 66  MISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHG 125

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------ 230
           L+ + FV  AL++MYAK   +  A+++F  +  +D+V+W  +                  
Sbjct: 126 LEFELFVSNALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGYAQNGLASEAIEVYL 184

Query: 231 ------------------------IGA-------------NKFLLDVILGTAVIDMYAKC 253
                                   +GA             N    DV +GT +IDMY KC
Sbjct: 185 LMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKC 244

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +D A  +F ++ +KN + W+AMI+ YG HG G+KAL+LF  M + RV P+ ITFVSLL
Sbjct: 245 GKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLL 304

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACSH+GLV +    F+ M +++ ++P +KHY CMVDL GRAG L+ A   I+ M ++ D
Sbjct: 305 SACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPD 364

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
              WGALL ACRIH N++L + A++ L E   +N G+YVLLSN+YAN G+W+ V  +R L
Sbjct: 365 ASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSL 424

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
              R L+K PGW+ I + NK+  F  G+ THP+ EEIYR L  L+ K++  GY+PD  F 
Sbjct: 425 ARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFV 484

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           L DV+E+ K   L  HSE+LAIA+G+I+T   T IRI KNLRVCGDCH+  K +S IT R
Sbjct: 485 LQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITER 544

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            IIVRD++RFHHF+GG CSC DYW
Sbjct: 545 EIIVRDSSRFHHFKGGTCSCGDYW 568


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/614 (38%), Positives = 334/614 (54%), Gaps = 105/614 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S + + Q ++VH   +  GT  ++ V N L+  YA    + +A  +FN M+ +D VSW+ 
Sbjct: 277 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 336

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLD-----------------------------SY 159
           MV G+S+  +F   FE F+   +  + LD                             S 
Sbjct: 337 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 396

Query: 160 TLP------FVIRACRDRKDIVMGRLIHDIVLKS----------GLDIDQFVCAALVDMY 203
           +LP       V+ AC        G  IH   LK+          G D D  V  AL+DMY
Sbjct: 397 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 456

Query: 204 AKCKVIDDARQLFDQMP--TRDLVTWTVMIGA--------------------------NK 235
           +KC+    AR +FD +P   R++VTWTVMIG                           N 
Sbjct: 457 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 516

Query: 236 FLLDVIL--------------------------------GTAVIDMYAKCGSIDSAREIF 263
           + +  IL                                   +IDMY+KCG +D+AR +F
Sbjct: 517 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 576

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M QK+ ISW++M+  YG HG+G +ALD+F  M  +  +P+ ITF+ +LYACSH G+V+
Sbjct: 577 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 636

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F SM  D+ + P  +HY C +DLL R+GRLD+A + ++ M +E    +W ALL A
Sbjct: 637 QGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 696

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR+H NV+LAE A   L+E   +N G Y L+SN+YA AGRW+DVA+IR LM +  +KK P
Sbjct: 697 CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 756

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +W++ +     F VGD +HP S +IY +L +L ++++  GY+P+TNF LHDVDEE K 
Sbjct: 757 GCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 816

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S I    I+VRD +RF
Sbjct: 817 NLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRF 876

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G+CSC  YW
Sbjct: 877 HHFKNGSCSCGGYW 890



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 160/327 (48%), Gaps = 39/327 (11%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKV 136
           H  I   G  +N+ + N L+ +Y+   +L +A  +F+ + +R   D +SW+ +V    K 
Sbjct: 178 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKS 237

Query: 137 ADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           ++     + F +            + D  ++  ++ AC   K +   + +H   +++G  
Sbjct: 238 SNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF 297

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250
            D FV  AL+D YAKC ++++A ++F+ M  +D+V+W  M+                  Y
Sbjct: 298 PDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG----------------Y 341

Query: 251 AKCGSIDSAREIFDRMRQKN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           ++ G+ ++A E+F  MR++N    V++W+A+IA Y   G   +AL+LF  M+ S  LPN 
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 401

Query: 307 ITFVSLLYACSHTGLVEEGLRLFS--------SMWDDFAVR-PDVKHYTCMVDLLGRAGR 357
           +T +S+L AC+  G   +G  + +        ++ +DF     D+  Y  ++D+  +   
Sbjct: 402 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461

Query: 358 LDEALKLIESMSV-EKDEGLWGALLGA 383
              A  + + + + E++   W  ++G 
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGG 488



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 145/361 (40%), Gaps = 89/361 (24%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGT--------------------LTNLIVANK 97
           V P  F S L  C++   + Q+H QI+A G                     ++   +   
Sbjct: 35  VYPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTG 94

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157
           ++  Y    A   A  +   +    +V W++++    K     +        +R G + D
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 154

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
            +TLP V++AC +      G   H ++  +G + + F+C ALV MY++C  +++A  +FD
Sbjct: 155 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 214

Query: 218 QMPTR---DLVTWTVMIGA--------------NKFLL-----------DVILGTAVIDM 249
           ++  R   D+++W  ++ A              +K  L           D+I   +++++
Sbjct: 215 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII---SIVNI 271

Query: 250 YAKCGSI--------------------------------------DSAREIFDRMRQKNV 271
              CGS+                                      ++A ++F+ M  K+V
Sbjct: 272 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 331

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           +SW+AM+A Y   G  + A +LF  M    +  + +T+ +++   S  G   E L LF  
Sbjct: 332 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 391

Query: 332 M 332
           M
Sbjct: 392 M 392



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LGT V+  Y  CG+ D A  + +R+     + W+ +I  +   G+   A+++   ML + 
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
             P+  T   +L AC        G   F  +        +V     +V +  R G L+EA
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 362 LKLIESMS 369
             + + ++
Sbjct: 210 SMIFDEIT 217


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 351/639 (54%), Gaps = 104/639 (16%)

Query: 43  RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLL 99
           R+  +MG         D    ++ L +C ++F +   +QVH   V  G + ++ V N L+
Sbjct: 217 RIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALV 276

Query: 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF-------------------- 139
            +YA    + +A+ +F G+K++D VSW+ MV G+S++  F                    
Sbjct: 277 SMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVI 336

Query: 140 ---------------INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
                              + FR+    G++ +  TL  ++  C     ++ G+  H  V
Sbjct: 337 TWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYV 396

Query: 185 LKSGLDI-------DQFVCAALVDMYAKCKVIDDARQLFDQMPTRD--LVTWTVMIGA-- 233
           +K+ L++       D  V   L+DMYAKCK    AR +FD +  +D  +VTWTVMIG   
Sbjct: 397 IKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYA 456

Query: 234 ------------------------NKFLLDVIL--------------------------- 242
                                   N F L   L                           
Sbjct: 457 QHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESE 516

Query: 243 ----GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
               G  +IDMY+K G ID+AR +FD M+ +NV+SW++++  YG HG+G++AL LF  M 
Sbjct: 517 VLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQ 576

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
                 + ITF+ +LYACSH+G+V++G+  F  M   F + P  +HY CMVDLLGRAGRL
Sbjct: 577 KLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRL 636

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA++LI++MS+E    +W ALL A RIH N++L E AA  L E   +N G Y LLSN+Y
Sbjct: 637 NEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLY 696

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           ANA RW+DVA+IR LM    ++K PG +WI+ +     F VGD +HP+SE+IY +L+ L 
Sbjct: 697 ANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLI 756

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           ++++  GY+P T+F LHDVD+E K   L+ HSEKLA+A+G++ T  G  IRI KNLR+CG
Sbjct: 757 KRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICG 816

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHS + ++S I    I++RD++RFHHF+ G+CSCR YW
Sbjct: 817 DCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 208/474 (43%), Gaps = 89/474 (18%)

Query: 48  MGPDCQFTRS---VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYI 101
           +G  CQ  R     D   F   L +C  I  +R    VHA + A G  +N+ + N ++ +
Sbjct: 112 LGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAM 171

Query: 102 YALHKALTDAHALFNGMKER---DSVSWSVMV-----GGFSKVADFINCFETFREFIRCG 153
           Y    AL DAH +F+ + ER   D VSW+ ++     GG S+ A  I     FR      
Sbjct: 172 YGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRI----AFRMGNHYS 227

Query: 154 MQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
           ++L  D+ TL  ++ AC     +  G+ +H   +++GL  D FV  ALV MYAKC  +++
Sbjct: 228 LKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNE 287

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN- 270
           A ++F+ +  +D+V+W  M+                  Y++ GS DSA  +F  M++++ 
Sbjct: 288 ANKVFEGIKKKDVVSWNAMVTG----------------YSQIGSFDSALSLFKMMQEEDI 331

Query: 271 ---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG------- 320
              VI+WSA+IA Y   G G +ALD+F  M    + PN +T  SLL  C+  G       
Sbjct: 332 KLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQ 391

Query: 321 ---------------------LVEEGL----------RLFSSMWDDFAVR-PDVKHYTCM 348
                                LV  GL          R+  S++D    +  +V  +T M
Sbjct: 392 THAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVM 451

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER---QP 405
           +    + G  ++ALKL   +  +K      A   +C +     L E+     L     + 
Sbjct: 452 IGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRN 511

Query: 406 QNPGHYVLLSN----VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           +N    + + N    +Y+ +G   D+   R +    +L+ +  WT +     +H
Sbjct: 512 ENESEVLYVGNCLIDMYSKSG---DIDAARAVFDNMKLRNVVSWTSLMTGYGMH 562



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 62/337 (18%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           FT S      IS L  C+ +   +  H QI   G  T +       YI     A  +A +
Sbjct: 24  FTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHG-FTEMFSYAVGAYIEC--GASAEAVS 80

Query: 114 LFNGMKERDSVS--WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           L   +    S    W+ ++    K+    +    + +  R G   D YT PFV++AC + 
Sbjct: 81  LLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEI 140

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---DLVTWT 228
             +  G  +H IV  +GL  + F+C ++V MY +C  +DDA Q+FD++  R   D+V+W 
Sbjct: 141 PSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWN 200

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
            ++ A                Y + G   +A  I  RM               G H    
Sbjct: 201 SILAA----------------YVQGGQSRTALRIAFRM---------------GNH---- 225

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKH 344
                     S ++ P+ IT V++L AC+    ++ G ++       F+VR     DV  
Sbjct: 226 ---------YSLKLRPDAITLVNILPACASVFALQHGKQVHG-----FSVRNGLVDDVFV 271

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
              +V +  +  +++EA K+ E +  +KD   W A++
Sbjct: 272 GNALVSMYAKCSKMNEANKVFEGIK-KKDVVSWNAMV 307


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/614 (38%), Positives = 334/614 (54%), Gaps = 105/614 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S + + Q ++VH   +  GT  ++ V N L+  YA    + +A  +FN M+ +D VSW+ 
Sbjct: 284 SLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 343

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLD-----------------------------SY 159
           MV G+S+  +F   FE F+   +  + LD                             S 
Sbjct: 344 MVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG 403

Query: 160 TLP------FVIRACRDRKDIVMGRLIHDIVLKS----------GLDIDQFVCAALVDMY 203
           +LP       V+ AC        G  IH   LK+          G D D  V  AL+DMY
Sbjct: 404 SLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 463

Query: 204 AKCKVIDDARQLFDQMP--TRDLVTWTVMIGA--------------------------NK 235
           +KC+    AR +FD +P   R++VTWTVMIG                           N 
Sbjct: 464 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 523

Query: 236 FLLDVIL--------------------------------GTAVIDMYAKCGSIDSAREIF 263
           + +  IL                                   +IDMY+KCG +D+AR +F
Sbjct: 524 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 583

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M QK+ ISW++M+  YG HG+G +ALD+F  M  +  +P+ ITF+ +LYACSH G+V+
Sbjct: 584 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 643

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F SM  D+ + P  +HY C +DLL R+GRLD+A + ++ M +E    +W ALL A
Sbjct: 644 QGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 703

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR+H NV+LAE A   L+E   +N G Y L+SN+YA AGRW+DVA+IR LM +  +KK P
Sbjct: 704 CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 763

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +W++ +     F VGD +HP S +IY +L +L ++++  GY+P+TNF LHDVDEE K 
Sbjct: 764 GCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 823

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S I    I+VRD +RF
Sbjct: 824 NLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRF 883

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G+CSC  YW
Sbjct: 884 HHFKNGSCSCGGYW 897



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 160/327 (48%), Gaps = 39/327 (11%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKV 136
           H  I   G  +N+ + N L+ +Y+   +L +A  +F+ + +R   D +SW+ +V    K 
Sbjct: 185 HGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKS 244

Query: 137 ADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           ++     + F +            + D  ++  ++ AC   K +   + +H   +++G  
Sbjct: 245 SNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF 304

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250
            D FV  AL+D YAKC ++++A ++F+ M  +D+V+W  M+                  Y
Sbjct: 305 PDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG----------------Y 348

Query: 251 AKCGSIDSAREIFDRMRQKN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           ++ G+ ++A E+F  MR++N    V++W+A+IA Y   G   +AL+LF  M+ S  LPN 
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 408

Query: 307 ITFVSLLYACSHTGLVEEGLRLFS--------SMWDDFAVR-PDVKHYTCMVDLLGRAGR 357
           +T +S+L AC+  G   +G  + +        ++ +DF     D+  Y  ++D+  +   
Sbjct: 409 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468

Query: 358 LDEALKLIESMSV-EKDEGLWGALLGA 383
              A  + + + + E++   W  ++G 
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGG 495



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 145/361 (40%), Gaps = 89/361 (24%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGT--------------------LTNLIVANK 97
           V P  F S L  C++   + Q+H QI+A G                     ++   +   
Sbjct: 42  VYPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTG 101

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157
           ++  Y    A   A  +   +    +V W++++    K     +        +R G + D
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPD 161

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
            +TLP V++AC +      G   H ++  +G + + F+C ALV MY++C  +++A  +FD
Sbjct: 162 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 221

Query: 218 QMPTR---DLVTWTVMIGA--------------NKFLL-----------DVILGTAVIDM 249
           ++  R   D+++W  ++ A              +K  L           D+I   +++++
Sbjct: 222 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII---SIVNI 278

Query: 250 YAKCGSI--------------------------------------DSAREIFDRMRQKNV 271
              CGS+                                      ++A ++F+ M  K+V
Sbjct: 279 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 338

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           +SW+AM+A Y   G  + A +LF  M    +  + +T+ +++   S  G   E L LF  
Sbjct: 339 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 398

Query: 332 M 332
           M
Sbjct: 399 M 399



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 1/128 (0%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LGT V+  Y  CG+ D A  + +R+     + W+ +I  +   G+   A+++   ML + 
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
             P+  T   +L AC        G   F  +        +V     +V +  R G L+EA
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 362 LKLIESMS 369
             + + ++
Sbjct: 217 SMIFDEIT 224


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/576 (39%), Positives = 345/576 (59%), Gaps = 58/576 (10%)

Query: 59  DPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    +S L +C +   +   R+VHA  V GG    + V+  +L +Y    A+  A  +F
Sbjct: 326 DAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVF 385

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           +GM++R+SVSW+ M+ G+++  D       F+  +  G+ +   ++   + AC +   + 
Sbjct: 386 DGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLD 445

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----- 230
            GR +H+++++ GL+ +  V  AL+ MY KCK  D A Q+FD++  +  V+W  M     
Sbjct: 446 EGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCT 505

Query: 231 -------------------IGANKFLL------------------------------DVI 241
                              +  + F L                              DV 
Sbjct: 506 QNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVY 565

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           + TA+IDMYAKCG +  AR +F+  R ++VI+W+AMI  YG HG GK A++LF  M SS 
Sbjct: 566 VLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSG 625

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            +PN  TF+S+L ACSH GLV+EG   FSSM +D+ + P ++HY  MVDLLGRAG+L EA
Sbjct: 626 KVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEA 685

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
              I+ M +E    ++GA+LGAC++HKNV+LAE +A+ + E +P+   ++VLL+N+YANA
Sbjct: 686 WSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANA 745

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
             W+DVA++R  M ++ L+K PGW+ ++++N+IH F  G + H Q+++IY  L  L E++
Sbjct: 746 SLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEI 805

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY+PDT+  +HDV+++VK   L +HSEKLAIA+GLI T  GT I+I KNLRVC DCH
Sbjct: 806 KAVGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCH 864

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  K +S +T R II+RD  RFHHF+ G CSC DYW
Sbjct: 865 NATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 139/319 (43%), Gaps = 62/319 (19%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +++ C  R D+  GR +H  +   GL  +     AL +MYAKC+   DAR++FD+M
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 220 PTRDLVTWTVMIG--ANKFLLDVILGTAV------------------------------- 246
           P RD V W  ++   A   L +  +G  V                               
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 247 ----------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                                 +D+Y KCG++DSAR++FD M+ +N +SW+AMI  Y  +
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAEN 406

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G   +AL LF  M+   V    ++ ++ L+AC   G ++EG R+   +     +  +V  
Sbjct: 407 GDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVH-ELLVRIGLESNVNV 465

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
              ++ +  +  R D A ++ + +   K    W A++  C  + +   +E A +     Q
Sbjct: 466 MNALITMYCKCKRTDLAAQVFDELGY-KTRVSWNAMILGCTQNGS---SEDAVRLFSRMQ 521

Query: 405 PQN--PGHYVLLSNVYANA 421
            +N  P  + L+S + A A
Sbjct: 522 LENVKPDSFTLVSIIPALA 540



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 144/353 (40%), Gaps = 70/353 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK- 135
           R VHAQ+ A G     + A  L  +YA  +   DA  +F+ M  RD V+W+ +V G+++ 
Sbjct: 245 RAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARN 304

Query: 136 --VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                 +      +E    G + D+ TL  V+ AC D + +   R +H   ++ G D   
Sbjct: 305 GLAEAAVGMVVRMQE--EDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQV 362

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------------GA 233
            V  A++D+Y KC  +D AR++FD M  R+ V+W  MI                    G 
Sbjct: 363 NVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGE 422

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREI------------------------------- 262
              + DV +  A +    + G +D  R +                               
Sbjct: 423 GVDVTDVSV-LAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDL 481

Query: 263 ----FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
               FD +  K  +SW+AMI     +G  + A+ LF  M    V P+  T VS++ A   
Sbjct: 482 AAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPA--- 538

Query: 319 TGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIES 367
             L +    L +     +++R     DV   T ++D+  + GR+  A  L  S
Sbjct: 539 --LADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNS 589


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/649 (38%), Positives = 347/649 (53%), Gaps = 100/649 (15%)

Query: 17  LRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI 76
           +R  SSS +  +ALE + H            +    +      P  F  S    R   + 
Sbjct: 100 IRGLSSSESPFLALEYYVH-----------MISSGTEPNEYTFPSIF-KSCTKIRGAHEG 147

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALT--------------------------- 109
           +QVHA ++  G   N  V   L+ +YA +  L                            
Sbjct: 148 KQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASK 207

Query: 110 ----DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
               +A  LF+ +  RD VSW+ M+ G+++          F E  R  +  +  T+  V+
Sbjct: 208 GFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVL 267

Query: 166 RAC-RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
            AC +    + +G  +   +   GL  +  +   L+DMY KC  +++A  LF+++  +++
Sbjct: 268 SACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNV 327

Query: 225 VTWTVMIG-------------------------------------ANKFLLD-------- 239
           V+W VMIG                                     AN   LD        
Sbjct: 328 VSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAY 387

Query: 240 -----------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                      V L T++IDMYAKCG +  A+ IFD M  K++ +W+AMI+ +  HG   
Sbjct: 388 VDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTD 447

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
            AL LF  M S   +P+ ITFV +L AC H GL+  G R FSSM  D+ V P + HY CM
Sbjct: 448 TALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCM 507

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           +DL GRAG  DEA  L+++M ++ D  +W +LLGACRIH+ ++LAE  AK L E +P+NP
Sbjct: 508 IDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENP 567

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             YVLLSN+YA AGRW+DVAKIR  +   R+KK+PG + IEV++ +H+F VGD  HPQS 
Sbjct: 568 SAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSN 627

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           EIY+ML  +  +LE AG++PDT+  L+D+DEE K G L  HSEKLAIAFGLI+T  GT I
Sbjct: 628 EIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTI 687

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RIMKNLRVCG+CHS  K +S I  R II RD NRFHHF+ G+CSC+DYW
Sbjct: 688 RIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 167/322 (51%), Gaps = 19/322 (5%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKER 121
           ++ L +C+ +  ++Q+H+QI+  G        +KL+   A+  H  L+ A +LF  ++  
Sbjct: 32  LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP 91

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           + V W+ M+ G S         E +   I  G + + YT P + ++C   +    G+ +H
Sbjct: 92  NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
             VLK GL+ + FV  +L++MYA+   + +AR +FD+   RD V++              
Sbjct: 152 AHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSF-------------- 197

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             TA+I  YA  G +D ARE+FD +  ++V+SW+AMI+ Y   G+ ++A+  F  M  ++
Sbjct: 198 --TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN  T +S+L AC+ +G   +      S  +D  +  +++    ++D+  + G L+EA
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEA 315

Query: 362 LKLIESMSVEKDEGLWGALLGA 383
             L E +  +K+   W  ++G 
Sbjct: 316 SNLFEKIQ-DKNVVSWNVMIGG 336


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/596 (41%), Positives = 338/596 (56%), Gaps = 80/596 (13%)

Query: 62  FFISSLL-SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F I S+L +C  I   R   ++H   V  G ++++ V N L+ +Y+   +L  A  LF+ 
Sbjct: 110 FIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDK 169

Query: 118 MKERDSVSWSVMVG-------GFSK---------VADFINCF---ETFREFIRC---GMQ 155
           M ERD VSWS M+        GFS+         +A +I C    E  R F+R     + 
Sbjct: 170 MSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVF 229

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            +  T+  +I +C     + +G+ +H  +L++G  +   +  ALVDMY KC  I  AR +
Sbjct: 230 PNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAI 289

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGTAVID--- 248
           FD M  +D++TWT MI A                        N+  +  +L    ++   
Sbjct: 290 FDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGAL 349

Query: 249 ---------------------------MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                      MYAKCG I  A+ +F     +++ +W+ M+A Y
Sbjct: 350 DMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGY 409

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
           G HG G+KAL LF  M +  V PN ITF+  L+ACSH GLV EG  LF  M  DF + P 
Sbjct: 410 GMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPK 469

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           V+HY CMVDLLGRAG LDEA K+IESM V  +  +WGA+L AC+IHKN ++ E+AA+ LL
Sbjct: 470 VEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELL 529

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
             +PQN G+ VL+SN+YA A RW DVA +R  +    +KK PG + IEV   +H F +GD
Sbjct: 530 ALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKMGD 589

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
           + HP  E+I  ML  +S+KL+ AGY+PDT+  LH++DEE K   L  HSEKLA+AFGLI+
Sbjct: 590 TAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMAFGLIS 649

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T  GT IR++KNLR+C DCH+  K +S I +RVIIVRD NRFHHF  G+CSC  YW
Sbjct: 650 TAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGYW 705



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 123/252 (48%), Gaps = 29/252 (11%)

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
             T+    +  +++DS+ +P V++AC       MG+ IH   +K+GL  D FV  AL+ M
Sbjct: 94  LNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQM 153

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
           Y++C  +  AR LFD+M  RD+V+W+ MI A   L                         
Sbjct: 154 YSECGSLVSARLLFDKMSERDVVSWSTMIRAYITL------------------------- 188

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F    Q++++SW+AMIA Y      ++   LF  M+   V PN IT +SL+ +C   G V
Sbjct: 189 FYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAV 248

Query: 323 EEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           + G RL + +  + F +   +   T +VD+ G+ G +  A  + +SM   KD   W A++
Sbjct: 249 QLGKRLHAYILRNGFGM--SLALATALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMI 305

Query: 382 GACRIHKNVDLA 393
            A      +D A
Sbjct: 306 SAYAQANCIDYA 317


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/601 (38%), Positives = 342/601 (56%), Gaps = 86/601 (14%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I S +  R + Q ++VH  I   G +  L + N+LL +YA   +L D+  LF+ M ERD
Sbjct: 76  LIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERD 135

Query: 123 SVSWSVMVGGFSK-------------------------VADFI------NCFETFREFIR 151
             SW++++ G++K                         ++ ++         E FR   R
Sbjct: 136 LCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKR 195

Query: 152 C-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
               + + +T+   + A      + +G+ IH  ++++GLD D+ V +AL DMY KC  I+
Sbjct: 196 SDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIE 255

Query: 211 DARQLFDQMPTRDLVTWTVMIG------------------------ANKFLLDVIL---- 242
           +AR +FD+M  RD+VTWT MI                          N+F    +L    
Sbjct: 256 EARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACA 315

Query: 243 --------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                      +A++ MY+KCG++ SA  +F    Q ++ SW++
Sbjct: 316 NQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTS 375

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +IA Y  +GQ  +A+  F +++ S   P+ ITFV +L AC+H GLV++GL  F S+ + +
Sbjct: 376 LIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQY 435

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            +     HY C++DLL R+G+ DEA  +I  MS++ D+ LW +LLG CRIH N+ LA+ A
Sbjct: 436 GLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRA 495

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A++L E +P+NP  YV L+N+YA AG W +VAKIR  M  R + K PG +WI ++  +H 
Sbjct: 496 AEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHV 555

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           F VGD +HP+S+EI   L  LS++++  G++PDTNF LHDV++E K  NL  HSEKLA+A
Sbjct: 556 FLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVA 615

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FG+I+TPEGT I++ KNLR C DCH+ IK +S IT R IIVRD+NRFH FE G CSCRDY
Sbjct: 616 FGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDY 675

Query: 577 W 577
           W
Sbjct: 676 W 676


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/566 (40%), Positives = 335/566 (59%), Gaps = 62/566 (10%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----ERDSVS 125
           CR++   R+    I      T+L+  N +L  YAL  +  +A  L + MK    E D ++
Sbjct: 411 CRSVEVARRKFGMI----KQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIIT 466

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W+ +V GF++  D     E F+     GM  ++ T+   + AC   +++ +G+ IH  VL
Sbjct: 467 WNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVL 526

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------ 233
           ++ +++   V +AL+ MY+ C  ++ A  +F ++ TRD+V W  +I A            
Sbjct: 527 RNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALD 586

Query: 234 ------------------------------------NKFLLDVILGT------AVIDMYA 251
                                               ++F++   L T      ++IDMY 
Sbjct: 587 LLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYG 646

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           +CGSI  +R IFD M Q++++SW+ MI+ YG HG G  A++LF    +  + PN ITF +
Sbjct: 647 RCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 706

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           LL ACSH+GL+EEG + F  M  ++A+ P V+ Y CMVDLL RAG+ +E L+ IE M  E
Sbjct: 707 LLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFE 766

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
            +  +WG+LLGACRIH N DLAE AA+ L E +PQ+ G+YVL++N+Y+ AGRW+D AKIR
Sbjct: 767 PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIR 826

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
            LM  R + K PG +WIEV+ K+H F VGD++HP  E+I   + +L   ++  GY+PDTN
Sbjct: 827 CLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTN 886

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
           F L DVDE+ K  +L  HSEK+A+AFGLI+T  GT +RI+KNLRVCGDCHS  K +S + 
Sbjct: 887 FVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVE 946

Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
           +R II+RD  RFHHF  G CSC DYW
Sbjct: 947 KRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 148/292 (50%), Gaps = 27/292 (9%)

Query: 61  KFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           + + S L  CR ++ +R   QVHAQ+V  G      + ++LL +Y     + DA  +F+ 
Sbjct: 90  EIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDK 149

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M ER+  SW+ ++  +  + D+    + F   +  G++ D +  P V +AC + K+  +G
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 209

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----- 232
           + ++D +L  G + +  V  +++DM+ KC  +D AR+ F+++  +D+  W +M+      
Sbjct: 210 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 269

Query: 233 -----ANKFLLDVILG---------TAVIDMYAKCGSIDSAREIFDRMR-----QKNVIS 273
                A K + D+ L           A+I  YA+ G  + A + F  M      + NV+S
Sbjct: 270 GEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVS 329

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           W+A+IA    +G   +AL +F  M+   V PN IT  S + AC++  L+  G
Sbjct: 330 WTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 381



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 102/251 (40%), Gaps = 51/251 (20%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALF---NGMKE--RDSVSWSVMVGGFSKVADFIN 141
           G   + +  N ++  YA      +A   F    G+K+   + VSW+ ++ G  +      
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201
               FR+ +  G++ +S T+   + AC +   +  GR IH   +K               
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIK--------------- 390

Query: 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                            +   D+++G +++D YAKC S++ AR 
Sbjct: 391 -------------------------------VEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F  ++Q +++SW+AM+A Y   G  ++A++L   M    + P+ IT+  L+   +  G 
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 322 VEEGLRLFSSM 332
            +  L  F  M
Sbjct: 480 GKAALEFFQRM 490


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/582 (41%), Positives = 347/582 (59%), Gaps = 67/582 (11%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  ++ SC  +F +   +Q H Q +  G  ++L V++ L+ +Y+    L++A  LF+ + 
Sbjct: 85  FPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP 144

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI---------RCGMQLDSYTLPFVIRACRD 170
            R+ V+W+ ++ G+ +  D       F+EF+           G  +DS  +  V+ AC  
Sbjct: 145 RRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSR 204

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-------KVIDD------------ 211
             +  +   +H + +K GLD    V   L+D YAKC       KV DD            
Sbjct: 205 VSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSM 264

Query: 212 ------------ARQLFDQM-----PTRDLVTWTVMI------GANK------------- 235
                       A ++F  M        + VT + ++      GA +             
Sbjct: 265 IAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMG 324

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           ++ +VI+ T++IDMY KCG  + AR  FD M++KNV SW+AMIA YG HG  ++ALD+F 
Sbjct: 325 YVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFY 384

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M+ + V PN ITF+S+L ACSH G +EEG R F++M  ++ V P V+HY CMVDLLGRA
Sbjct: 385 QMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRA 444

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G + EA  LI+SM V +D  LWG+LL ACRIHK+V+LAE++A+ L +  P N G+YVLL+
Sbjct: 445 GYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLA 504

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA+AGRW+DV ++R L+  R L K PG++ +E++ ++H F VGD  HPQ E+IY+ L 
Sbjct: 505 NIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLE 564

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            LS KL+ AGY+P+    LHDVDEE K   +  HSEKLA+AFG++ +  G+ I ++KNLR
Sbjct: 565 ELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLR 624

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VCGDCH+ IK +S I  R IIVRDA RFHHF+ G CSC DYW
Sbjct: 625 VCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 20/159 (12%)

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER-DSVSWSVMVGG 132
           F+I + H    A  T TNL                     LFN   +R D  SW+ ++  
Sbjct: 16  FKIHKNHFSTTAAATNTNLTT-------------------LFNKYFDRTDVYSWNSLIAE 56

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            ++  D       F    +  ++ +  T P  I++C    D+  G+  H   L  G + D
Sbjct: 57  LARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESD 116

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            FV +AL+DMY+KC  + +AR LFD++P R++VTWT +I
Sbjct: 117 LFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155



 Score = 39.7 bits (91), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 5/150 (3%)

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDR    +V SW+++IA     G   ++L  F  M    + PNR TF   + +CS    +
Sbjct: 42  FDR---TDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDL 98

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
             G +        F    D+   + ++D+  + G+L  A  L + +   ++   W +L+ 
Sbjct: 99  NSGKQAHQQAL-VFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIP-RRNIVTWTSLIT 156

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
               + +   A M  K  L  + +  G  V
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEV 186


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/582 (39%), Positives = 345/582 (59%), Gaps = 58/582 (9%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           F +  D   +   L +C ++  +   R+VH+++V  G  +++ V N LL +YA    +  
Sbjct: 155 FGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGT 214

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+ M ERD  SW+ M+ G++K AD    F  F    + G+  D  TL  ++ AC D
Sbjct: 215 ARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACAD 274

Query: 171 RKDIVMGRLIHDIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV---- 225
            K +  G++IH   +++ + + ++F   +L++MY  C  + DAR+LF+++  +D V    
Sbjct: 275 LKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNS 334

Query: 226 -------------------------------TWTVMIGA-------------------NK 235
                                          T+  ++GA                     
Sbjct: 335 MILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKG 394

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  + I+GTA++DMY+KCGS+  +R +FD M  K+++SWSAM+A YG HG+G++A+ +  
Sbjct: 395 FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILD 454

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M ++ V+P+   F S+L ACSH GLV EG  +F  M  ++ V+P + HY+CMVDLLGRA
Sbjct: 455 GMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRA 514

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G LDEA  +I +M ++    +W ALL A R+HKN+ LAE++A+ + +  P+    Y+ LS
Sbjct: 515 GHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLS 574

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA   RW DV ++R ++ R+ LKK PG ++IE++N +H+F VGD +H Q+E+IY  L 
Sbjct: 575 NIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLN 634

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            L ++L+ AGY PDT+   +DV+EEVK   L+ HSE+LAIAF LI T  GT IRI KNLR
Sbjct: 635 ELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLR 694

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VCGDCH+  K +S +T R II+RD +RFHHF  G CSC DYW
Sbjct: 695 VCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 190/434 (43%), Gaps = 103/434 (23%)

Query: 45  PMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN-KLLYIYA 103
           P+Q  P      S+     + S  + ++  Q +Q+HA +++   L N    N KL   YA
Sbjct: 51  PLQQYP----LTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYA 106

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
               ++ A  +F+G+  ++S  W+ M+ G++     +     +RE +  G + D++T PF
Sbjct: 107 GCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPF 166

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           V++AC D   + +GR +H  V+  GL+ D +V  +L+ MYAK   +  AR +FD+M  RD
Sbjct: 167 VLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERD 226

Query: 224 LVTWTVMI--------GANKFLLDVILGTA------------------------------ 245
           L +W  MI            FL+  ++G A                              
Sbjct: 227 LTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHG 286

Query: 246 -----------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                            +I+MY  C  +  AR +F+R+R K+ +SW++MI  Y  +G   
Sbjct: 287 YAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAF 346

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACS-----------HTGLVEEGL----------- 326
           ++L LF  M      P+++TF+++L AC            H+ LV++G            
Sbjct: 347 ESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALV 406

Query: 327 -------------RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SV 370
                        R+F  M D   V      ++ MV   G  GR  EA+ +++ M   SV
Sbjct: 407 DMYSKCGSLACSRRVFDEMPDKSLVS-----WSAMVAGYGLHGRGREAISILDGMKANSV 461

Query: 371 EKDEGLWGALLGAC 384
             D G++ ++L AC
Sbjct: 462 IPDNGVFTSILSAC 475



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 84/196 (42%), Gaps = 15/196 (7%)

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           C AL+  +   K     +QL   M     ++++++        +  L T +   YA CG 
Sbjct: 62  CGALLQSFTNTKSFKQGQQLHAHM-----ISFSILEN------NTYLNTKLAAFYAGCGL 110

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +  A  IFD +  KN   W+ MI  Y  +G   K+L L+  ML      +  T+  +L A
Sbjct: 111 MSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKA 170

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C    LVE G R+ S +     +  D+     ++ +  + G +  A  + + M+ E+D  
Sbjct: 171 CGDLLLVEIGRRVHSEVV-VCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMA-ERDLT 228

Query: 376 LWGALLGACRIHKNVD 391
            W  ++      KN D
Sbjct: 229 SWNTMISG--YAKNAD 242


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/554 (41%), Positives = 329/554 (59%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++H+ +V  G   +  V   L+ +Y     + +A  +F+ + +++  SW+  + G+  V 
Sbjct: 129 KMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVG 188

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                 + FR  +  G++ DS++L  V+ AC+   D+  G  I + + ++G+  + FV  
Sbjct: 189 KCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVAT 248

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTR----------------------------------- 222
           ALVD Y KC  ++ AR +FD M  +                                   
Sbjct: 249 ALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKP 308

Query: 223 ------------------DLVTW-TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                             +L  W + +I  N+FL + +LGTA+IDMYAKCG +D A E+F
Sbjct: 309 DCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVF 368

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             MR+K+ + W+A I+     G  K AL LF  M  S + P+R TFV LL AC+H GLVE
Sbjct: 369 RGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVE 428

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG R F+SM   F + P+++HY CMVDLLGRAG LDEA +LI+SM +E +  +WGALLG 
Sbjct: 429 EGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR+H++  L E+  K L+  +P + G+YVLLSN+YA + +W++ AKIR +M+ R +KKIP
Sbjct: 489 CRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIP 548

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G++WIEV+  +HQF VGD++HP SE+IY  L  L++ L+ AGY+P T+  L D++EE K 
Sbjct: 549 GYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKE 608

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             +  HSEKLA+AFGLI+T     I ++KNLRVCGDCH  IKH+S I  R IIVRD NRF
Sbjct: 609 HFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRF 668

Query: 564 HHFEGGACSCRDYW 577
           H F  G CSC+DYW
Sbjct: 669 HCFTDGLCSCKDYW 682



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 175/390 (44%), Gaps = 58/390 (14%)

Query: 55  TRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           T+S   K  +    SC  +  ++ +HA ++  G   +  + NK+L           +  +
Sbjct: 7   TKSAGIKNRLIQGFSC--LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRI 64

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            +  KE +   ++ M+ G      F    E +    + G+  DS+T PFV++AC    D 
Sbjct: 65  LDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDS 124

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
            +G  +H +V+K+G + D FV  +L+++Y KC  ID+A ++FD +P ++  +WT  I   
Sbjct: 125 ELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGY 184

Query: 234 -----------------------NKFLLDVILGTAV----------IDMY---------- 250
                                  + F L  +L              ID Y          
Sbjct: 185 VGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNV 244

Query: 251 ----------AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                      KCG+++ AR +FD M +KN++SWS+MI  Y  +G  K+ALDLF  ML+ 
Sbjct: 245 FVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNE 304

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+    V +L +C+  G +E G    S++ +      +    T ++D+  + GR+D 
Sbjct: 305 GLKPDCYAMVGVLCSCARLGALELG-DWASNLINGNEFLDNSVLGTALIDMYAKCGRMDR 363

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           A ++   M  +KD  +W A +    +  +V
Sbjct: 364 AWEVFRGMR-KKDRVVWNAAISGLAMSGHV 392


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 340/600 (56%), Gaps = 95/600 (15%)

Query: 68  LSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           L  R + + +QVHA I   G++  L ++N+LL +YA   +L DA  +F+ M  RD  SW+
Sbjct: 130 LKQRALKEGKQVHAHIKTSGSI-GLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWN 188

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC--RDRKD------------ 173
           +M+ G+ K  +F    E  R         D+++   +I  C   +R +            
Sbjct: 189 IMISGYVKGGNF----EKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKH 244

Query: 174 ----------------------IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
                                 + MG+ IH  +++ GLD D+ V  +L+DMY KC  I++
Sbjct: 245 DYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEE 304

Query: 212 ARQLFDQMPTRDLVTWTVM------------------------IGANKFLLDVIL----- 242
           AR +FD+M  RD+V+WT M                        I  N F    +L     
Sbjct: 305 ARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACAD 364

Query: 243 -------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                     +A++ MY+KCG I++A+ +F+ + Q ++ SW+++
Sbjct: 365 LAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSL 424

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +  Y  HGQ  KAL  F ++L S   P+ I F+ +L AC+H GLV++GL  F S+ +   
Sbjct: 425 LVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHG 484

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           +   + HY C++DLL RAG+  EA  +I  M ++ D+ +W ALLG CRIH N++LA+ AA
Sbjct: 485 LTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAA 544

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           KSL E +P+NP  YV L+N+YA+AG   + A IR+ M  R + K PG +WIE+  ++H F
Sbjct: 545 KSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVF 604

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
           SVGD++HP+S+EI   L  LS++++  GY+PDTNF LHDV+ E K  NL  HSEKLA+AF
Sbjct: 605 SVGDNSHPKSKEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAF 664

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           G+I+TP GT I++ KNLR C DCH+ IK +S IT R IIVRD+NRFH FEGG+CSC+DYW
Sbjct: 665 GIISTPSGTPIKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 109/219 (49%), Gaps = 20/219 (9%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C  ++ +  G+ +H  +  SG  I  ++   L+DMYAKC  + DA ++FD+M  RD
Sbjct: 125 LLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRD 183

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           L +W +MI                  Y K G+ + AR +FD+M  ++  SW+A+I+    
Sbjct: 184 LCSWNIMISG----------------YVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQ 227

Query: 284 HGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           H + ++AL+L+ +M        N+ T  S L A +    +  G ++   +     +  D 
Sbjct: 228 HNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIM-RMGLDSDE 286

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             +  ++D+ G+ G ++EA  + + M  E+D   W  ++
Sbjct: 287 VVWCSLLDMYGKCGSIEEARYIFDKME-ERDVVSWTTMI 324


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 346/601 (57%), Gaps = 58/601 (9%)

Query: 34  GHEQNPMNPR---VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT 90
           G+ QN    R   V +QM    Q   S+     + ++   + +   R +H      G   
Sbjct: 217 GYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEY 276

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            + VA  +L  Y    ++  A  +F GM  R+ VSW+ M+ G+++  +    F TF + +
Sbjct: 277 MVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKML 336

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G++  + ++   + AC +  D+  GR +H ++ +  +  D  V  +L+ MY+KCK +D
Sbjct: 337 DEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVD 396

Query: 211 DARQLFDQMPTRDLVTWTVM------------------------IGANKFLL-------- 238
            A  +F  +  + +VTW  M                        I  + F L        
Sbjct: 397 IAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALA 456

Query: 239 ----------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                 +V + TA+ID +AKCG+I +AR++FD M++++VI+W+A
Sbjct: 457 DLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNA 516

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MI  YG +G G++ALDLF  M +  V PN ITF+S++ ACSH+GLVEEG+  F SM +++
Sbjct: 517 MIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENY 576

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P + HY  MVDLLGRAGRLD+A K I+ M V+    + GA+LGACRIHKNV+L E  
Sbjct: 577 GLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKT 636

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A  L +  P + G++VLL+N+YA+A  W  VA++R  M ++ ++K PG + +E+ N++H 
Sbjct: 637 ADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHT 696

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           F  G + HPQS+ IY  L TL ++++ AGY+PDTN  +HDV+E+VK   L SHSE+LAIA
Sbjct: 697 FYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTN-SIHDVEEDVKEQLLSSHSERLAIA 755

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGL+ T  GT I I KNLRVCGDCH   K++S +T R IIVRD  RFHHF+ G CSC DY
Sbjct: 756 FGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDY 815

Query: 577 W 577
           W
Sbjct: 816 W 816



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 169/367 (46%), Gaps = 58/367 (15%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C ++ ++ Q+   I+  G     +   KL+ ++    ++T+A  +F  ++ +  V +  M
Sbjct: 54  CTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTM 113

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDS-YTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           + G++K +   +    F E +RC   +   Y   ++++   +  D+  GR IH +V+ +G
Sbjct: 114 LKGYAKNSTLRDAVR-FYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNG 172

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKF--------- 236
              + F   A+V++YAKC+ I+DA ++F++MP RDLV+W  ++     N F         
Sbjct: 173 FQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVL 232

Query: 237 -------------LLDVILGTA-----------------------------VIDMYAKCG 254
                        L+ V+   A                             ++D Y KCG
Sbjct: 233 QMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCG 292

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           S+ SAR +F  M  +NV+SW+ MI  Y  +G+ ++A   F  ML   V P  ++ +  L+
Sbjct: 293 SVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALH 352

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC++ G +E G R    + D+  +  DV     ++ +  +  R+D A  +  ++   K  
Sbjct: 353 ACANLGDLERG-RYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLK-HKTV 410

Query: 375 GLWGALL 381
             W A++
Sbjct: 411 VTWNAMI 417



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 182/452 (40%), Gaps = 100/452 (22%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  ++  G  +NL     ++ +YA  + + DA+ +F  M +RD VSW+ +V G+++ 
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  +   +    G + DS TL  V+ A  D K + +GR IH    ++G +    V 
Sbjct: 222 GFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVA 281

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN--------------KFLLDVIL 242
            A++D Y KC  +  AR +F  M +R++V+W  MI                 K L + + 
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341

Query: 243 GTAVIDM-----YAKCGSIDSAREI----------FD----------------------- 264
            T V  M      A  G ++  R +          FD                       
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASV 401

Query: 265 --RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL--------- 313
              ++ K V++W+AMI  Y  +G   +AL+LF  M S  + P+  T VS++         
Sbjct: 402 FGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVT 461

Query: 314 -------------------YACS-------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
                              + C+         G ++   +LF  M +   +      +  
Sbjct: 462 RQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNA 516

Query: 348 MVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           M+D  G  G   EAL L   M   SV+ +E  + +++ AC     V+      +S+ E  
Sbjct: 517 MIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENY 576

Query: 405 PQNP--GHYVLLSNVYANAGRWQDVAK-IRDL 433
              P   HY  + ++   AGR  D  K I+D+
Sbjct: 577 GLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDM 608


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/558 (40%), Positives = 332/558 (59%), Gaps = 57/558 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+VHA +V GG   ++ V N +L +Y     +  A  +F+ M  RD  SW+ M+ GF K 
Sbjct: 144 RKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKN 203

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK---SGLDIDQ 193
            +    FE F +  R G   D  TL  ++ AC D  D+ +G+ IH  V++   SG   + 
Sbjct: 204 GEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNG 263

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT----------------------VMI 231
           F+  +++DMY  C+ +  AR+LF+ +  +D+V+W                       V++
Sbjct: 264 FLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVV 323

Query: 232 GA--------------------------------NKFLLDVILGTAVIDMYAKCGSIDSA 259
           GA                                  ++++V++GTA+I MYA CGS+  A
Sbjct: 324 GAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCA 383

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             +FD M +KN+ + + M+  +G HG+G++A+ +F  ML   V P+   F ++L ACSH+
Sbjct: 384 CRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHS 443

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GLV+EG  +F  M  D++V P   HY+C+VDLLGRAG LDEA  +IE+M ++ +E +W A
Sbjct: 444 GLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTA 503

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LL ACR+H+NV LA ++A+ L E  P     YV LSN+YA   RW+DV  +R L+ +RRL
Sbjct: 504 LLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRL 563

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           +K P ++++E+   +HQF VGD++H QS++IY  L  L+E+L+ AGY PDT+  L+DV+E
Sbjct: 564 RKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEE 623

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E+K   L+ HSE+LA+AF LI T  GT IRI KNLRVCGDCH+ IK +S +T R II+RD
Sbjct: 624 EIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRD 683

Query: 560 ANRFHHFEGGACSCRDYW 577
             RFHHF  G CSC  YW
Sbjct: 684 ICRFHHFRDGLCSCGGYW 701



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D   C  L+      K +  A QL   + T                 +  L T +   YA
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTT-----------GGTLRRNTYLATKLAACYA 69

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            CG +  A+ IFD++  KN   W++MI  Y  +    +AL L+  ML     P+  T+  
Sbjct: 70  VCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPF 129

Query: 312 LLYACSHTGLVEEGLRL 328
           +L AC    L E G ++
Sbjct: 130 VLKACGDLLLREMGRKV 146


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 339/576 (58%), Gaps = 57/576 (9%)

Query: 59  DPKFFISSLLSCRN--IFQIRQ-VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F+S L +  N  + Q+ Q VH +I   G      V   L+ +YA    ++ A  +F
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIF 255

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + + E++ V+W++++ G+++        E   +  +  +  +  T   +++ C     + 
Sbjct: 256 DKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALE 315

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------LVTWTV 229
            G+ +H  +++SG   + +V  AL+ MY KC  + +AR+LF  +P RD      +VT   
Sbjct: 316 HGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYA 375

Query: 230 MIG--------------------------------ANKFL----------------LDVI 241
            +G                                +  FL                LDV 
Sbjct: 376 QLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVY 435

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           L +A++ MYAKCGS+D AR +F++M ++NV++W+AMI     HG+ ++AL+ F  M    
Sbjct: 436 LQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQG 495

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+++TF S+L AC+H GLVEEG + F SM+ D+ ++P V+HY+C VDLLGRAG L+EA
Sbjct: 496 IKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEA 555

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             +I +M  +    +WGALL ACRIH +V+  E AA+++L+  P + G YV LSN+YA A
Sbjct: 556 ENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAA 615

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GR++D  K+R +M +R + K PG +WIEV+ K+H F V D +HP+++EIY  L  L+E++
Sbjct: 616 GRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQI 675

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY+PDT F LHDVDEE KV  L SHSE+LAI +GL+ TP GT IRI+KNLRVCGDCH
Sbjct: 676 KEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCH 735

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  K +S +  R II RDA+RFHHF  G CSC D+W
Sbjct: 736 TASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 176/371 (47%), Gaps = 56/371 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++ Q R+VHA I+  G   N  + N LL +YA   +LTDA  +F+G+++R+ VSW+ M+
Sbjct: 110 RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMI 169

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             F      +  ++ +      G + D  T   ++ A  + + + +G+ +H  + K+GL+
Sbjct: 170 EAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLE 229

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------- 233
           ++  V  +LV MYAKC  I  A+ +FD++P +++VTWT++I                   
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM 289

Query: 234 -------NKFLLDVILG------------------------------TAVIDMYAKCGSI 256
                  NK     IL                                A+I MY KCG +
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGL 349

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             AR++F  +  ++V++W+AM+  Y   G   +A+DLF  M    + P+++TF S L +C
Sbjct: 350 KEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSC 409

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S    ++EG  +   +        DV   + +V +  + G +D+A  +   MS E++   
Sbjct: 410 SSPAFLQEGKSIHQQLVHA-GYSLDVYLQSALVSMYAKCGSMDDARLVFNQMS-ERNVVA 467

Query: 377 WGALLGACRIH 387
           W A++  C  H
Sbjct: 468 WTAMITGCAQH 478



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 143/319 (44%), Gaps = 56/319 (17%)

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           G ++ D+++ S  V    K              I  G ++ S     +++ C   + +  
Sbjct: 55  GFRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQ 114

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           GR +H  +LKSG+  ++++   L+ MYAKC  + DAR++FD +  R++V+WT MI A   
Sbjct: 115 GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA 174

Query: 234 ------------------------------NKFL---------------------LDVIL 242
                                         N F                      L+  +
Sbjct: 175 GNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV 234

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GT+++ MYAKCG I  A+ IFD++ +KNV++W+ +IA Y   GQ   AL+L   M  + V
Sbjct: 235 GTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEV 294

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN+IT+ S+L  C+    +E G ++   +      R ++     ++ +  + G L EA 
Sbjct: 295 APNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGR-EIWVVNALITMYCKCGGLKEAR 353

Query: 363 KLIESMSVEKDEGLWGALL 381
           KL   +   +D   W A++
Sbjct: 354 KLFGDLP-HRDVVTWTAMV 371



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 13/177 (7%)

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
           I  N++L + +L      MYAKCGS+  AR +FD +R +N++SW+AMI A+    Q  +A
Sbjct: 127 IQPNRYLENTLL-----SMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEA 181

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMV 349
              +  M  +   P+++TFVSLL A ++  L++ G ++   +      + P V   T +V
Sbjct: 182 YKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLV 239

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            +  + G + +A  + + +  EK+   W  L+        VD+    A  LLE+  Q
Sbjct: 240 GMYAKCGDISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDV----ALELLEKMQQ 291


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/614 (38%), Positives = 330/614 (53%), Gaps = 105/614 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S + + Q ++VH   +  GT  ++ V N L+  YA    + +A  +FN M+ +D VSW+ 
Sbjct: 132 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 191

Query: 129 MVGGFSKVADFINCFE-----------------------------------TFREFIRCG 153
           MV G+S+  +F   FE                                    FR+ I  G
Sbjct: 192 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 251

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS----------GLDIDQFVCAALVDMY 203
              +  T+  V+ AC        G  IH   LK+          G D D  V  AL+DMY
Sbjct: 252 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 311

Query: 204 AKCKVIDDARQLFDQMP--TRDLVTWTVMIGA--------------------------NK 235
           +KC+    AR +FD +P   R++VTWTVMIG                           N 
Sbjct: 312 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 371

Query: 236 FLLDVIL--------------------------------GTAVIDMYAKCGSIDSAREIF 263
           + +  IL                                   +I+MY+KCG +D+AR +F
Sbjct: 372 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 431

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M QK+ ISW++M+  YG HG+G +ALD+F  M  +  +P+ ITF+ +LYACSH G+V+
Sbjct: 432 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 491

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F SM  D+ + P  +HY   +DLL R GRLD+A K ++ M +E    +W ALL A
Sbjct: 492 QGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 551

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR+H NV+LAE A   L+E   +N G Y L+SN+YA AGRW+DVA+IR LM +  +KK P
Sbjct: 552 CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 611

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +W++ +     F VGD +HP S +IY +L +L ++++  GY+P+TNF LHDVDEE K 
Sbjct: 612 GCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 671

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S I    I+VRD +RF
Sbjct: 672 NLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRF 731

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G+CSC  YW
Sbjct: 732 HHFKNGSCSCGGYW 745



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 110/249 (44%), Gaps = 69/249 (27%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           +R G +LD +TLP V++AC +      G   H ++  +G + + F+C ALV MY++C  +
Sbjct: 2   LRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSL 61

Query: 210 DDARQLFDQMPTR---DLVTWTVMIGA--------------NKFLL-----------DVI 241
           ++A  +FD++  R   D+++W  ++ A              +K  L           D+I
Sbjct: 62  EEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 121

Query: 242 LGTAVIDMYAKCGSI--------------------------------------DSAREIF 263
              +++++   CGS+                                      ++A ++F
Sbjct: 122 ---SIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           + M  K+V+SW+AM+A Y   G  K A +LF  M    +  + +T+ +++   S  G   
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 238

Query: 324 EGLRLFSSM 332
           E L +F  M
Sbjct: 239 EALNVFRQM 247



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 7/189 (3%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           L++C ++  IR   Q+HA ++       +   VAN L+ +Y+    +  A  +F+ M ++
Sbjct: 378 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 437

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            ++SW+ M+ G+          + F +  + G   D  T   V+ AC     +  G    
Sbjct: 438 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 497

Query: 182 D-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL-VTWTVMIGANKFLLD 239
           D +    GL       A  +D+ A+   +D A +    MP     V W  ++ A +   +
Sbjct: 498 DSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSN 557

Query: 240 VILGTAVID 248
           V L    ++
Sbjct: 558 VELAEHALN 566


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/582 (39%), Positives = 334/582 (57%), Gaps = 60/582 (10%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           R++D    +S L +C       +   +H+  +  G  + L V+NKL+ +YA   +L D  
Sbjct: 243 RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQ 302

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+ M  RD +SW+ ++  +      +     F+E     +Q D  TL  +        
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLG 362

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCA-ALVDMYAKCKVIDDARQLFDQMPTRDLV------ 225
           +I   R +    L+ G  ++      A+V MYAK  ++D AR +F+ +P +D++      
Sbjct: 363 EIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTII 422

Query: 226 -------------------------------TWTVMIGA-------------------NK 235
                                          TW  ++ A                   N 
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 482

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
             LDV +GT++ DMY KCG +D A  +F ++ + N + W+ +IA +G+HG G+KA+ LF 
Sbjct: 483 LYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 542

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            ML   V P+ ITFV+LL ACSH+GLV+EG   F  M  D+ + P +KHY CMVDL GRA
Sbjct: 543 EMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRA 602

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G+L+ AL  I+SM ++ D  +WGALL ACR+H NVDL ++A++ L E +P++ G++VLLS
Sbjct: 603 GQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLS 662

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA+AG+W+ V +IR + + + L+K PGW+ +EV+NK+  F  G+ THP  EE+YR L 
Sbjct: 663 NMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELT 722

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            L EKL++ GY+PD  F L DV+++ K   L SHSE+LA+AF LI TP  T IRI KNLR
Sbjct: 723 ALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLR 782

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VCGDCHS  K +S IT R IIVRD+NRFHHF+ G CSC DYW
Sbjct: 783 VCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 192/416 (46%), Gaps = 65/416 (15%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           D + F S L +CRN+    ++H   +  G + ++ VA  L+++Y  + A+ +A  LF+ M
Sbjct: 152 DYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEM 211

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             RD  SW+ M+ G+ +  +      T  + +R    +DS T+  ++ AC +  D   G 
Sbjct: 212 PTRDMGSWNAMISGYCQSGNAKEAL-TLSDGLR---AMDSVTVVSLLSACTEAGDFNRGV 267

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
            IH   +K GL+ + FV   L+D+YA+   + D +++FD+M  RDL++W  +I A     
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 234 --------------NKFLLDVILGTAVIDMYAKCGSIDSARE------------------ 261
                         ++   D +   ++  + ++ G I + R                   
Sbjct: 328 QPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIG 387

Query: 262 ------------------IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM--LSSR 301
                             +F+ +  K+VISW+ +I+ Y  +G   +A++++ +M      
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGE 447

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  N+ T+VS+L ACS  G + +G++L   +  +  +  DV   T + D+ G+ GRLD+A
Sbjct: 448 ISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDA 506

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER--QPQNPGHYVLLS 415
           L L   +    +   W  L+     H + + A M  K +L+   +P +     LLS
Sbjct: 507 LSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 561



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 58/304 (19%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C N+   + +HA++V    + N+ ++ KL+ +Y     +  A   F+ +  RD  +W++M
Sbjct: 64  CTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLM 123

Query: 130 VGGFSKV---ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + G+ +    ++ I CF  F   +  G+Q D  T P V++ACR+  D   G  IH + LK
Sbjct: 124 ISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALK 178

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLL-- 238
            G   D +V A+L+ +Y +   + +AR LFD+MPTRD+ +W  MI      G  K  L  
Sbjct: 179 FGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL 238

Query: 239 ------------------------------------------DVILGTAVIDMYAKCGSI 256
                                                     ++ +   +ID+YA+ GS+
Sbjct: 239 SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
              +++FDRM  +++ISW+++I AY  + Q  +A+ LF  M  SR+ P+ +T +SL    
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 317 SHTG 320
           S  G
Sbjct: 359 SQLG 362



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 19/155 (12%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM-M 297
           +V +   ++++Y   G++  AR  FD +  ++V +W+ MI+ YG  G   + +  F + M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM 144

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRL------FSSMWDDFAVRPDVKHYTCMVDL 351
           LSS + P+  TF S+L AC +   V +G ++      F  MWD + V   + H  C    
Sbjct: 145 LSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVY-VAASLIHLYC---- 196

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALL-GACR 385
             R G +  A  L + M   +D G W A++ G C+
Sbjct: 197 --RYGAVVNARILFDEMPT-RDMGSWNAMISGYCQ 228


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/614 (38%), Positives = 330/614 (53%), Gaps = 105/614 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S + + Q ++VH   +  GT  ++ V N L+  YA    + +A  +FN M+ +D VSW+ 
Sbjct: 239 SLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNA 298

Query: 129 MVGGFSKVADFINCFE-----------------------------------TFREFIRCG 153
           MV G+S+  +F   FE                                    FR+ I  G
Sbjct: 299 MVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG 358

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS----------GLDIDQFVCAALVDMY 203
              +  T+  V+ AC        G  IH   LK+          G D D  V  AL+DMY
Sbjct: 359 SLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMY 418

Query: 204 AKCKVIDDARQLFDQMP--TRDLVTWTVMIGA--------------------------NK 235
           +KC+    AR +FD +P   R++VTWTVMIG                           N 
Sbjct: 419 SKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 478

Query: 236 FLLDVIL--------------------------------GTAVIDMYAKCGSIDSAREIF 263
           + +  IL                                   +I+MY+KCG +D+AR +F
Sbjct: 479 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 538

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M QK+ ISW++M+  YG HG+G +ALD+F  M  +  +P+ ITF+ +LYACSH G+V+
Sbjct: 539 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 598

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F SM  D+ + P  +HY   +DLL R GRLD+A K ++ M +E    +W ALL A
Sbjct: 599 QGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 658

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR+H NV+LAE A   L+E   +N G Y L+SN+YA AGRW+DVA+IR LM +  +KK P
Sbjct: 659 CRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 718

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +W++ +     F VGD +HP S +IY +L +L ++++  GY+P+TNF LHDVDEE K 
Sbjct: 719 GCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKN 778

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S I    I+VRD +RF
Sbjct: 779 NLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRF 838

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G+CSC  YW
Sbjct: 839 HHFKNGSCSCGGYW 852



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 119/276 (43%), Gaps = 69/276 (25%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           +V W++++    K     +        +R G +LD +TLP V++AC +      G   H 
Sbjct: 82  AVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHG 141

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---DLVTWTVMIGA------ 233
           ++  +G + + F+C ALV MY++C  +++A  +FD++  R   D+++W  ++ A      
Sbjct: 142 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 201

Query: 234 --------NKFLL-----------DVILGTAVIDMYAKCGSI------------------ 256
                   +K  L           D+I   +++++   CGS+                  
Sbjct: 202 AWTALDLFSKMTLIVHEKPTNERSDII---SIVNILPACGSLKAVPQTKEVHGNAIRNGT 258

Query: 257 --------------------DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                               ++A ++F+ M  K+V+SW+AM+A Y   G  K A +LF  
Sbjct: 259 FLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKN 318

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           M    +  + +T+ +++   S  G   E L +F  M
Sbjct: 319 MRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 7/189 (3%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           L++C ++  IR   Q+HA ++       +   VAN L+ +Y+    +  A  +F+ M ++
Sbjct: 485 LMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 544

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            ++SW+ M+ G+          + F +  + G   D  T   V+ AC     +  G    
Sbjct: 545 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYF 604

Query: 182 D-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL-VTWTVMIGANKFLLD 239
           D +    GL       A  +D+ A+   +D A +    MP     V W  ++ A +   +
Sbjct: 605 DSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSN 664

Query: 240 VILGTAVID 248
           V L    ++
Sbjct: 665 VELAEHALN 673


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/571 (41%), Positives = 332/571 (58%), Gaps = 60/571 (10%)

Query: 63  FISSLLSCRNIFQIR-QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           FI    SC   F+   ++H  +V  G  + + ++N L+ +Y        +  +F+ M ++
Sbjct: 15  FIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDK 74

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           ++VSWS ++G   +       F  FR+ +  G +     +   +   R  ++      ++
Sbjct: 75  NAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSHEE---ADDVY 131

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--------------------QMPT 221
            +V+++GLD DQ V +A   M+A+C  ++ AR+LFD                     MP 
Sbjct: 132 RVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPL 191

Query: 222 RDLVTWTVMIGANKF-----LLDVI------------------------------LGTAV 246
             L     M+    F     LL VI                              + TA+
Sbjct: 192 EALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETAL 251

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           ID+Y KCGS+  AR++FD M+++N+I+WSAMI+ YG HG G++AL+LF  M +S V P+ 
Sbjct: 252 IDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VKPDH 310

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           ITFVS+L ACSH+GLV EG   F+SM  DF V P  +HY CMVD+LGRAG+LDEA   IE
Sbjct: 311 ITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIE 370

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
            M V  +  +WGALLGACRIH NVDLAEM A++L +  P N G YV+L N+Y   G+ ++
Sbjct: 371 RMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTLTGKRKE 430

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
              IR LM  R +KKI G++ IE++NK++ F  GD +HPQ++ IY  L  L +++   GY
Sbjct: 431 ADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDRIRQEGY 490

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
            PD NF LHDVDEE K   LY HSEKLAI FGL+    G+ IRI KNLRVCGDCH+  K 
Sbjct: 491 TPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRVCGDCHTATKF 550

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S +T R I+VRDA+RFHHF+ GACSCRDYW
Sbjct: 551 ISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 52/289 (17%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           +R G+Q D++T PF+I+AC   +    G  IH  V+K G     F+  +L+ MY KC   
Sbjct: 2   LRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKY 61

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA------------------------------------ 233
           + +RQ+FD+MP ++ V+W+ +IGA                                    
Sbjct: 62  ELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACV 121

Query: 234 ---------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                          N    D  + +A   M+A+CG ++ AR++FD +  K++++W+  I
Sbjct: 122 RSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTI 181

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
            AY       +AL L   M+   + P+ IT + ++ ACS     +    +   +   F  
Sbjct: 182 EAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFY 241

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
              +   T ++DL  + G L  A K+ + M  E++   W A++    +H
Sbjct: 242 NQLLAVETALIDLYVKCGSLTYARKVFDGMQ-ERNIITWSAMISGYGMH 289


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/616 (38%), Positives = 336/616 (54%), Gaps = 107/616 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S + + QI+++H+  +  GT  +  V N L+  YA   ++ DA  +FN M+ +D VSW+ 
Sbjct: 271 SLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNA 330

Query: 129 MVGGFSKVADFINCFE-----------------------------------TFREFIRCG 153
           MV G+++  +F   FE                                    F++ I  G
Sbjct: 331 MVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDG 390

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL------------DIDQFVCAALVD 201
            + +S T+  ++ AC     +  G  IH   LK  L              D  V  AL+D
Sbjct: 391 SEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALID 450

Query: 202 MYAKCKVIDDARQLFDQMP--TRDLVTWTVMIGA-------------------------- 233
           MY+KC+    AR +FD +P   R++VTWTVMIG                           
Sbjct: 451 MYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAP 510

Query: 234 NKFLLDVIL--------------------------------GTAVIDMYAKCGSIDSARE 261
           N + +  IL                                   +IDMY+KCG +D+AR 
Sbjct: 511 NAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARN 570

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M ++N +SW++M++ YG HG+GK+ALD+F  M  +  +P+ I+F+ LLYACSH+G+
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V++GL  F  M  D+ V    +HY C++DLL R GRLD+A K I+ M +E    +W ALL
Sbjct: 631 VDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALL 690

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACR+H NV+LAE A   L+  + +N G Y L+SN+YANA RW+DVA+IR LM +  +KK
Sbjct: 691 SACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKK 750

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +W++ +     F VGD +HP S EIY +L  L  ++++ GY+P+TNF LHDVD+E 
Sbjct: 751 RPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEE 810

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S I    IIVRD++
Sbjct: 811 KNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSS 870

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G+CSC  YW
Sbjct: 871 RFHHFKNGSCSCGGYW 886



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 156/366 (42%), Gaps = 52/366 (14%)

Query: 51  DCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGT--------------------LT 90
           DC F R V P  F S L  CR++  +RQ+H +I+A G                     ++
Sbjct: 23  DC-FGRDVSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVS 81

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
              +   ++  Y    A  DA ++   +    +V W+++V    K              +
Sbjct: 82  PKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRML 141

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G + D +TLP+ ++AC +      GR +H ++  +G + + FVC ALV MY++C  ++
Sbjct: 142 RAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLE 201

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM---- 266
           DA  +FD++ TR            K + DVI   +++  + K  +  +A E+F  M    
Sbjct: 202 DASLVFDEI-TR------------KGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIV 248

Query: 267 ------RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
                  + ++IS   ++ A        +  ++    + +    +     +L+   +  G
Sbjct: 249 HEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCG 308

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK---DEGLW 377
            + + +++F+ M  +F    DV  +  MV    ++G    A +L E+M  E    D   W
Sbjct: 309 SMNDAVKVFNVM--EFK---DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITW 363

Query: 378 GALLGA 383
            A++  
Sbjct: 364 SAVIAG 369



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 57  SVDPKFFISS--LLSCRNIFQIR---QVHAQIVAGGTLTNLI--VANKLLYIYALHKALT 109
           +V P  +  S  L++C ++  +R   Q+HA +         +  VAN L+ +Y+    + 
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  +F+ M +R+ VSW+ M+ G+          + F +  + G   D  +   ++ AC 
Sbjct: 567 TARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS 626

Query: 170 DRKDIVMGRLIHDIVLKSGLDI----DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DL 224
               +  G    DI ++   D+    + + C  ++D+ A+C  +D A +   +MP     
Sbjct: 627 HSGMVDQGLNYFDI-MRRDYDVVASAEHYAC--VIDLLARCGRLDKAWKTIQEMPMEPSA 683

Query: 225 VTWTVMIGANKFLLDVILGTAVID 248
           V W  ++ A +   +V L    ++
Sbjct: 684 VIWVALLSACRVHSNVELAEYALN 707


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/605 (38%), Positives = 347/605 (57%), Gaps = 89/605 (14%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD-AHALFNG 117
           +PK  +S L SC  +  ++ +HA ++   T+ ++  A+ L+ I +++K L D A  +F  
Sbjct: 16  NPK--LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISI-SINKNLLDYAAQVFYQ 72

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           ++  +   ++  + GFS   D    F  + +  R G+  D+ T PF+++AC  +  + MG
Sbjct: 73  IQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMG 132

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYA-------------------------------KC 206
              H  +++ G D D +V  +LV MY+                               K 
Sbjct: 133 IQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKS 192

Query: 207 KVIDDARQLFDQMPTRDLVTWTVM------------------------------------ 230
             +  AR+LFD+MP ++LVTW+VM                                    
Sbjct: 193 GDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVI 252

Query: 231 -----IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                +GA             NK  +++ILGTA++DMYA+CGSID A  +FD++  ++ +
Sbjct: 253 ASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDAL 312

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           SW+ +IA +  HG  +KAL+ F  M  + + P  ITF ++L ACSH GLVE GL LF SM
Sbjct: 313 SWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESM 372

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
             D+ + P ++HY CMVDLLGRAG+L EA K +  M ++ +  +WGALLGACRIHKN ++
Sbjct: 373 KRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEI 432

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE A K+L+E +P++ G+YVLLSN+YA   +W++V  IR +M  R + K PG+T  E++ 
Sbjct: 433 AERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDG 492

Query: 453 KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
           K+H+F++GD THP+ ++I RM   +  K+ LAGY  + +  L D+DEE K  N++ HSEK
Sbjct: 493 KVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEK 552

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LAIA+ ++ T     IRI+KNLRVC DCH+  K +S +  R +IVRD NRFHHF+GGACS
Sbjct: 553 LAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACS 612

Query: 573 CRDYW 577
           C DYW
Sbjct: 613 CMDYW 617


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 332/581 (57%), Gaps = 59/581 (10%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           R++D    +S L +C       +   +H+  +  G  + L V+NKL+ +YA    L D  
Sbjct: 243 RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQ 302

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+ M  RD +SW+ ++  +      +     F+E     +Q D  TL  +        
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCA-ALVDMYAKCKVIDDARQLFDQMPTRDLV------ 225
           DI   R +    L+ G  ++      A+V MYAK  ++D AR +F+ +P  D++      
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422

Query: 226 ------------------------------TWTVMIGA-------------------NKF 236
                                         TW  ++ A                   N  
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
            LDV + T++ DMY KCG ++ A  +F ++ + N + W+ +IA +G+HG G+KA+ LF  
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML   V P+ ITFV+LL ACSH+GLV+EG   F  M  D+ + P +KHY CMVD+ GRAG
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           +L+ ALK I+SMS++ D  +WGALL ACR+H NVDL ++A++ L E +P++ G++VLLSN
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN 662

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA+AG+W+ V +IR +   + L+K PGW+ +EV+NK+  F  G+ THP  EE+YR L  
Sbjct: 663 MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTA 722

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L  KL++ GY+PD  F L DV+++ K   L SHSE+LAIAF LIATP  T IRI KNLRV
Sbjct: 723 LQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRV 782

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCHS  K +S IT R IIVRD+NRFHHF+ G CSC DYW
Sbjct: 783 CGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 191/415 (46%), Gaps = 64/415 (15%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           D + F S L +CR +    ++H   +  G + ++ VA  L+++Y+ +KA+ +A  LF+ M
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             RD  SW+ M+ G+ +  +      T    +R    +DS T+  ++ AC +  D   G 
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEAL-TLSNGLRA---MDSVTVVSLLSACTEAGDFNRGV 267

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
            IH   +K GL+ + FV   L+D+YA+   + D +++FD+M  RDL++W  +I A     
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 234 --------------NKFLLDVILGTAVIDMYAKCGSIDSARE------------------ 261
                         ++   D +   ++  + ++ G I + R                   
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG 387

Query: 262 ------------------IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM-LSSRV 302
                             +F+ +   +VISW+ +I+ Y  +G   +A++++ +M     +
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEI 447

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             N+ T+VS+L ACS  G + +G++L   +  +  +  DV   T + D+ G+ GRL++AL
Sbjct: 448 AANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDAL 506

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER--QPQNPGHYVLLS 415
            L   +    +   W  L+     H + + A M  K +L+   +P +     LLS
Sbjct: 507 SLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 58/304 (19%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C N+   + +HA++V    + N+ ++ KL+ +Y     +  A   F+ ++ RD  +W++M
Sbjct: 64  CTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLM 123

Query: 130 VGGFSKV---ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + G+ +    ++ I CF  F   +  G+  D  T P V++ACR    ++ G  IH + LK
Sbjct: 124 ISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRT---VIDGNKIHCLALK 178

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLL-- 238
            G   D +V A+L+ +Y++ K + +AR LFD+MP RD+ +W  MI      G  K  L  
Sbjct: 179 FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL 238

Query: 239 ------------------------------------------DVILGTAVIDMYAKCGSI 256
                                                     ++ +   +ID+YA+ G +
Sbjct: 239 SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRL 298

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
              +++FDRM  +++ISW+++I AY  + Q  +A+ LF  M  SR+ P+ +T +SL    
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358

Query: 317 SHTG 320
           S  G
Sbjct: 359 SQLG 362



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 34/247 (13%)

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQFVCAA--LVDMYA---KCK 207
           M+  +++LP  I  C+       GR     VL+S G  I +F  +A  L D +    + K
Sbjct: 1   MKFGTFSLPRQIPTCKG------GRFTR--VLQSIGSVIREFSASANALQDCWKNGNESK 52

Query: 208 VIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
            IDD   LF      +        +  +K + +V +   ++++Y   G++  AR  FD +
Sbjct: 53  EIDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHI 112

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPM-MLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           + ++V +W+ MI+ YG  G   + +  F + MLSS + P+  TF S+L AC     V +G
Sbjct: 113 QNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDG 169

Query: 326 LRL------FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            ++      F  MWD +           ++ L  R   +  A  L + M V +D G W A
Sbjct: 170 NKIHCLALKFGFMWDVYVA-------ASLIHLYSRYKAVGNARILFDEMPV-RDMGSWNA 221

Query: 380 LL-GACR 385
           ++ G C+
Sbjct: 222 MISGYCQ 228


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/586 (40%), Positives = 340/586 (58%), Gaps = 62/586 (10%)

Query: 1   MSKLKKHGFLVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDP 60
           +S L K  F  S+S + +  + S T++    P           +P    P  + T  + P
Sbjct: 18  LSSLLKPTFFASLSLQYQSPNPSFTSS---APQFDNNQTHLKAIPSCSNPHAEST-CLTP 73

Query: 61  KF--FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            +  + S L SC   + I   +Q+HAQ+   G   + ++A KL+ +Y +  +L+ A  LF
Sbjct: 74  TYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLF 133

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + + + +   W+V++ G++    +    + + +    G+  D++T PFV++AC     I 
Sbjct: 134 DRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIE 193

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
            GR IH+ V+++G +                                             
Sbjct: 194 HGREIHEHVVQTGWE--------------------------------------------- 208

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN---VISWSAMIAAYGYHGQGKKALD 292
              DV +G A+IDMYAKCG + SARE+FD++  ++   V+SW+AMI  Y  HG   +ALD
Sbjct: 209 --KDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALD 266

Query: 293 LFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
           LF  M  +RV  P+ ITFV +L ACSH GL+EEG   F +M  D+ + P V+HYTCMVDL
Sbjct: 267 LFEEM--NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDL 324

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LG +GRLDEA  LI  M V  D G+WGALL +C+IH NV+L E+A + L+E +P + G+Y
Sbjct: 325 LGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNY 384

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           V+LSN+YA AG+W+ VAK+R LMT RRLKK    +WIEV+NK+H F  GD++HP S+EIY
Sbjct: 385 VILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIY 444

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  +   ++ AGY P T    HDV+++ K   + SHSE+LAIAFGLI+TP GT + I 
Sbjct: 445 SELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLIT 504

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+C DCH  IK +S IT R I VRD NR+HHF+ G CSC DYW
Sbjct: 505 KNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/581 (40%), Positives = 333/581 (57%), Gaps = 66/581 (11%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  ++ +C ++F I   +Q H Q    G  +++ V++ L+ +Y+    L DA  +F+ + 
Sbjct: 79  FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKD 173
           +RD VSW+ M+ G+    + ++    F++ +         M LDS  L  VI AC     
Sbjct: 139 KRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---------KVID-------------- 210
             +   IH  V+K G D    V   L+D YAK          K+ D              
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIM 258

Query: 211 ----------DARQLFDQMPTRDLVTWTVMIGANKFLL---------------------- 238
                     +A ++F ++    +VT+  +  +   L                       
Sbjct: 259 SVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL 318

Query: 239 --DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
             DVI+GT++IDMY KCG +++AR+ FDRM+ KNV SW+AMIA YG HG   KAL+LFP 
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M+ S V PN ITFVS+L ACSH GL  EG R F++M   F V P ++HY CMVDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            L +A  LI+ M ++ D  +W +LL ACRIHKNV+LAE++   L E    N G+Y+LLS+
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSH 498

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA+AGRW+DV ++R +M  R L K PG++ +E+  ++H F +GD  HPQ E+IY  L  
Sbjct: 499 IYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAE 558

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L+ KL  AGY+ +T+   HDVDEE K   L  HSEKLAIAFG++ T  G+ + ++KNLRV
Sbjct: 559 LNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRV 618

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ IK +S I  R  +VRDA RFHHF+ G CSC DYW
Sbjct: 619 CSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 144/363 (39%), Gaps = 78/363 (21%)

Query: 105 HKALTDAHALFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
           H    +   LFN   ++ D  SW+ ++   ++  D       F    +  +     + P 
Sbjct: 22  HTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPC 81

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
            I+AC    DI  G+  H      G   D FV +AL+ MY+ C  ++DAR++FD++P RD
Sbjct: 82  AIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRD 141

Query: 224 LVTWTVMIGA---NKFLLDVIL-------------------GTAVIDMYAKCGSIDSA-- 259
           +V+WT MI     N   LD +                       ++ + + C  + +   
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201

Query: 260 -----REIFDRMRQKNVISWSAMIAAYGYHGQGKKAL----------------------- 291
                  +  R   + V   + ++ AY   G+G  A+                       
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 292 ----------DLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDD---FA 337
                     ++F  ++ ++V+  N IT  ++L A SH+G     LR+   + D      
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG----ALRIGKCIHDQVIRMG 317

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           +  DV   T ++D+  + GR++ A K  + M   K+   W A++    +H +      AA
Sbjct: 318 LEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGH------AA 370

Query: 398 KSL 400
           K+L
Sbjct: 371 KAL 373


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/525 (43%), Positives = 325/525 (61%), Gaps = 20/525 (3%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           QFT S      + +  S  ++ Q +Q H  I+  G  ++++V   L+++YA   +L DA 
Sbjct: 10  QFTLST----VVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+ M ER + +W+ M+ G ++  D     + F E       + S+T      A     
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSE--RDVVSWTAVIAGYAQNGYG 123

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
           D  +   + + + K+G+  D+F+  +++   A    ++  RQ            + V  G
Sbjct: 124 DESLN--VFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFH---------AYVVQSG 172

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
              F LD+++G+A++DMYAK GS++ A ++FD+M Q+N +SW+++I     HG+G  A+ 
Sbjct: 173 ---FALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVL 229

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  ML + + PN I+FV +L ACSHTGLV EG   F+ M  ++ + PDV HYTCM+DLL
Sbjct: 230 LFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLL 289

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAG LDEA   I  M VE D  +WGALLGACRIH N +LA+  A+ LL  + Q  G YV
Sbjct: 290 GRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYV 349

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLSN+YA AG+W D AK+R LM  R + K PG++WIEV+  +H F  G+++HPQ +EI+ 
Sbjct: 350 LLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHE 409

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L +LS K++ AGY+P+ NF L DV+++ K  +L  HSEKLAIAFG+I T  GT IR+ K
Sbjct: 410 FLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAK 469

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVCGDCH+ IK +S    R I+VRDANRFHHF+ G CSC DYW
Sbjct: 470 NLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 129/250 (51%), Gaps = 18/250 (7%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ + +TL  V++AC     +  G+  H+ ++K G + D  V  ALV MYA+C  ++DA
Sbjct: 5   GVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDA 64

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
             +FD+M  R   TW  MI                  +A+   +  A ++F  M +++V+
Sbjct: 65  GHVFDKMSERSTRTWNAMITG----------------HAQNRDMKKALKLFYEMSERDVV 108

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           SW+A+IA Y  +G G ++L++F  M  + +  +R    S+L AC+    +E G R F + 
Sbjct: 109 SWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG-RQFHAY 167

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
                   D+   + +VD+  ++G +++A ++ + M  +++E  W +++  C  H   + 
Sbjct: 168 VVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGND 226

Query: 393 AEMAAKSLLE 402
           A +  + +L+
Sbjct: 227 AVLLFEQMLQ 236


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 325/555 (58%), Gaps = 56/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  ++  G  +++ V+N L+ +Y+    L DA  +F+GM+ RD VSW+ ++  + +  D
Sbjct: 270 VHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDD 329

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQFVCA 197
            +     F+E +  GM+ D  T+  +        D  +GR +H  V++   L++D  +  
Sbjct: 330 PVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGN 389

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           ALV+MYAK   ID AR +F+Q+P+RD+++W  +                           
Sbjct: 390 ALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIV 449

Query: 231 ---------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                          +GA             N   LDV + T +IDMY KCG ++ A  +
Sbjct: 450 PNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSL 509

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  + Q+  + W+A+I++ G HG G+KAL LF  M +  V  + ITFVSLL ACSH+GLV
Sbjct: 510 FYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLV 569

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +E    F +M  ++ ++P++KHY CMVDL GRAG L++A  L+ +M ++ D  +WG LL 
Sbjct: 570 DEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLA 629

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N +L   A+  LLE   +N G+YVLLSN+YAN G+W+   K+R L   R L+K 
Sbjct: 630 ACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKT 689

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ + V + +  F  G+ +HPQ  EIY  L  L+ K++  GY+PD +F L DV+E+ K
Sbjct: 690 PGWSSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEK 749

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LAI FG+I+TP  + IRI KNLRVCGDCH+  K++S IT R IIVRD+NR
Sbjct: 750 EEILTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNR 809

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 810 FHHFKDGICSCGDYW 824



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 193/388 (49%), Gaps = 60/388 (15%)

Query: 58  VDPKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           V P F  F   L +C ++    ++H  ++  G   ++ VA  L+++Y+   A+  AH +F
Sbjct: 146 VRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVF 205

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  RD  SW+ M+ GF +  +               +++D+ T+  ++  C    D+V
Sbjct: 206 VDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVV 265

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
            G L+H  V+K GL+ D FV  AL++MY+K   + DA+++FD M  RDLV+W  +I A +
Sbjct: 266 GGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYE 325

Query: 236 F----------------------LLDVI-------------LGTAV-------------- 246
                                  LL V+             +G AV              
Sbjct: 326 QNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDI 385

Query: 247 ------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                 ++MYAK GSID AR +F+++  ++VISW+ +I  Y  +G   +A+D + MM   
Sbjct: 386 VIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEG 445

Query: 301 R-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           R ++PN+ T+VS+L A SH G +++G+++   +  +  +  DV   TC++D+ G+ GRL+
Sbjct: 446 RTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-CLFLDVFVATCLIDMYGKCGRLE 504

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIH 387
           +A+ L   +  E     W A++ +  IH
Sbjct: 505 DAMSLFYEIPQETSVP-WNAIISSLGIH 531



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 187/436 (42%), Gaps = 77/436 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           SC NI   +Q+HA ++  G   ++++  +L+ +YA    L+ +   F  ++ ++  SW+ 
Sbjct: 60  SCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNS 119

Query: 129 MVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           MV  + +   + +  +   E +   G++ D YT P V++AC    D   G  +H  VLK 
Sbjct: 120 MVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCWVLKM 176

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------- 233
           G + D +V A+L+ +Y++   ++ A ++F  MP RD+ +W  MI                
Sbjct: 177 GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVL 236

Query: 234 -----NKFLLDV---------------ILGTAVIDMY--------------------AKC 253
                 +  +D                ++G  ++ +Y                    +K 
Sbjct: 237 DRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKF 296

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  A+ +FD M  ++++SW+++IAAY  +     AL  F  ML   + P+ +T VSL 
Sbjct: 297 GRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL- 355

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVR-----PDVKHYTCMVDLLGRAGRLDEALKLIESM 368
              S  G + +  R        F VR      D+     +V++  + G +D A  + E +
Sbjct: 356 --ASIFGQLSD--RRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQL 411

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMA--AKSLLERQPQ---NPGHYVLLSNVYANAGR 423
              +D   W  L+     +    LA  A  A +++E       N G +V +   Y++ G 
Sbjct: 412 P-SRDVISWNTLITG---YAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGA 467

Query: 424 WQDVAKIRDLMTRRRL 439
            Q   KI   + +  L
Sbjct: 468 LQQGMKIHGRLIKNCL 483



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 83/208 (39%), Gaps = 6/208 (2%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  ++H +++      ++ VA  L+ +Y     L DA +LF  + +  SV W+ ++    
Sbjct: 470 QGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLG 529

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS---GLDI 191
                    + F++    G++ D  T   ++ AC     +   +   D + K      ++
Sbjct: 530 IHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNL 589

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMY 250
             + C  +VD++ +   ++ A  L   MP + D   W  ++ A +   +  LGT   D  
Sbjct: 590 KHYGC--MVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRL 647

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMI 278
            +  S +    +       NV  W   +
Sbjct: 648 LEVDSENVGYYVLLSNIYANVGKWEGAV 675


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/581 (40%), Positives = 333/581 (57%), Gaps = 66/581 (11%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  ++ +C ++F I   +Q H Q    G  +++ V++ L+ +Y+    L DA  +F+ + 
Sbjct: 79  FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKD 173
           +R+ VSW+ M+ G+    + ++    F++ +         M LDS  L  VI AC     
Sbjct: 139 KRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---------KVID-------------- 210
             +   IH  V+K G D    V   L+D YAK          K+ D              
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIM 258

Query: 211 ----------DARQLFDQMPTRDLVTWTVMIGANKFLL---------------------- 238
                     +A ++F ++    +VT+  +  +   L                       
Sbjct: 259 SVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL 318

Query: 239 --DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
             DVI+GT++IDMY KCG +++AR+ FDRM+ KNV SW+AMIA YG HG   KAL+LFP 
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M+ S V PN ITFVS+L ACSH GL  EG R F++M   F V P ++HY CMVDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            L +A  LI+ M ++ D  +W +LL ACRIHKNV+LAE++   L E    N G+Y+LLS+
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSH 498

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA+AGRW+DV ++R +M  R L K PG++ +E+  ++H F +GD  HPQ E+IY  L  
Sbjct: 499 IYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAE 558

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L+ KL  AGY+ +T+   HDVDEE K   L  HSEKLAIAFG++ T  G+ + ++KNLRV
Sbjct: 559 LNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRV 618

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ IK +S I  R  +VRDA RFHHF+ G CSC DYW
Sbjct: 619 CSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 144/363 (39%), Gaps = 78/363 (21%)

Query: 105 HKALTDAHALFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
           H    +   LFN   ++ D  SW+ ++   ++  D       F    +  +     + P 
Sbjct: 22  HTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPC 81

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
            I+AC    DI  G+  H      G   D FV +AL+ MY+ C  ++DAR++FD++P R+
Sbjct: 82  AIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN 141

Query: 224 LVTWTVMIGA---NKFLLDVIL-------------------GTAVIDMYAKCGSIDSA-- 259
           +V+WT MI     N   LD +                       ++ + + C  + +   
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201

Query: 260 -----REIFDRMRQKNVISWSAMIAAYGYHGQGKKAL----------------------- 291
                  +  R   + V   + ++ AY   G+G  A+                       
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 292 ----------DLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDD---FA 337
                     ++F  ++ ++V+  N IT  ++L A SH+G     LR+   + D      
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG----ALRIGKCIHDQVIRMG 317

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           +  DV   T ++D+  + GR++ A K  + M   K+   W A++    +H +      AA
Sbjct: 318 LEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGH------AA 370

Query: 398 KSL 400
           K+L
Sbjct: 371 KAL 373


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 253/677 (37%), Positives = 360/677 (53%), Gaps = 106/677 (15%)

Query: 7   HGFLVSISAKLRFFSSSTTA----AIAL-----EPHGHEQNPMNPRVPMQMGPDCQ---F 54
           H  L ++S  + F + S +     AI+L     EP+    N M   + M + P      F
Sbjct: 58  HNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFF 117

Query: 55  TR----SVDPK-----FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
            R     V+P      F + S     +  + +Q+HA ++  G ++++ +   L+ +YA  
Sbjct: 118 VRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQS 177

Query: 106 KALTDAH-------------------------------ALFNGMKERDSVSWSVMVGGFS 134
             + +A                                 LF+ M  +D VSW+ M+ G++
Sbjct: 178 GEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYA 237

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           ++         F +  +  +  +  T+  V+ AC     + +G  +   +   GL  +  
Sbjct: 238 QMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLK 297

Query: 195 VCAALVDMYAKCKVIDDARQLFDQM----------------------------------- 219
           +  AL+DMY+KC  +  AR+LFD M                                   
Sbjct: 298 LVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASG 357

Query: 220 --PTR----------------DLVTWT-VMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
             PT                 DL  W    I  N   +   L T++ID+YAKCG+I +AR
Sbjct: 358 VEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAAR 417

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++FD M+ K++ SW+AMI     HGQ  KA +LF  M S  + PN ITFV +L AC H G
Sbjct: 418 QVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAG 477

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           LV+ G + FSSM  D+ + P  +HY CM+DLLGRAG  +EA  L+++M V+ D  +WG+L
Sbjct: 478 LVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSL 537

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           LGACR H  V+L E+ A+ L E +P NPG YVLLSN+YA AG+W DVA+IR  +  R +K
Sbjct: 538 LGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMK 597

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K+PG T IEV+N +H+F VGD  HPQSE+IYRML  + E+L++ G++ DT+  L+D+DEE
Sbjct: 598 KVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEE 657

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K G L  HSEKLAIAFGLI+T  GT IRI+KNLRVC +CHS  K +S I  R II RD 
Sbjct: 658 WKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDR 717

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G+CSC DYW
Sbjct: 718 NRFHHFKDGSCSCNDYW 734



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 22/320 (6%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDSV 124
           L  C++I   +Q+HA I+  G    L   +KL+   A+ ++  ++ A +LFN ++E +  
Sbjct: 36  LSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLF 95

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            W+ M+ G S           F   I  G++ +SYT PF++++C        G+ IH  V
Sbjct: 96  IWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHV 155

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
           LK G   D F+  +L++MYA+   +++A+ +FDQ   RD +++T +I             
Sbjct: 156 LKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAG----------- 204

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
                YA  G +D AR++FD M  K+V+SW+AMIA Y   G+ K+AL LF  M  + V P
Sbjct: 205 -----YALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPP 259

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           N  T VS+L AC+ +  ++ G  + S  W +D  +  ++K    ++D+  + G L  A +
Sbjct: 260 NESTIVSVLSACAQSNALDLGNSMRS--WIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 364 LIESMSVEKDEGLWGALLGA 383
           L + M +E+D   W  ++G 
Sbjct: 318 LFDDM-LERDVISWNVMIGG 336


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 326/572 (56%), Gaps = 57/572 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +++ L +C ++  +   +Q+HA IV     +++ V+  L  +Y    A  DA  +F  + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD ++W+ M+ GF           TF   +  G+  D  T   V+ AC     +  G+ 
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKE 352

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------- 232
           IH    K GL  D     AL++MY+K   + DARQ+FD+MP RD+V+WT ++G       
Sbjct: 353 IHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412

Query: 233 -----------------ANK------------------------------FLLDVILGTA 245
                            ANK                               L D+ +  A
Sbjct: 413 VVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNA 472

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ MY KCGS++ A  +F+ M  ++V++W+ +I   G +G+G +AL  + +M S  + PN
Sbjct: 473 LMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPN 532

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
             TFV++L AC    LVEEG R F+ M  D+ + P  KHY CMVD+L RAG L EA  +I
Sbjct: 533 AATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVI 592

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            ++ ++    +WGALL ACRIH NV++ E AA+  L+ +PQN G YV LS +YA AG W+
Sbjct: 593 LTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWR 652

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           DVAK+R  M  R +KK PG +WIE+  ++H F   D +HP+++EIY  L TL ++++  G
Sbjct: 653 DVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLG 712

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PDT F +HD+D+E K   +  HSEKLAIA+GLI+TP GT IRI KNLRVC DCH+  K
Sbjct: 713 YVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATK 772

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S IT+R II RDA+RFHHF+ G CSC DYW
Sbjct: 773 FISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 179/382 (46%), Gaps = 59/382 (15%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD   ++  L SC   +++   +QVH  I+  G   N+ + N LL +YA   ++ +A  L
Sbjct: 26  VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQL 85

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+    +  VSW+VM+ G++        F  F    +  ++ D +T   ++ AC     +
Sbjct: 86  FDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVL 145

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             GR IH  V+++GL  D  V  AL+ MYAKC  + DAR++FD M +RD V+WT + GA 
Sbjct: 146 NWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAY 205

Query: 234 -------------NKFLLDVILGTAV--IDMYAKCGSIDS-------------------- 258
                        +  L + +  + +  +++ + CGS+ +                    
Sbjct: 206 AESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDV 265

Query: 259 ------------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                             ARE+F+ +  ++VI+W+ MI  +   GQ ++A   F  ML  
Sbjct: 266 RVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEE 325

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+R T+ ++L AC+  G +  G  + +    D  V  DV+    ++++  +AG + +
Sbjct: 326 GVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV-SDVRFGNALINMYSKAGSMKD 384

Query: 361 ALKLIESMSVEKDEGLWGALLG 382
           A ++ + M  ++D   W  LLG
Sbjct: 385 ARQVFDRMP-KRDVVSWTTLLG 405



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 137/285 (48%), Gaps = 56/285 (19%)

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G Q+DSY    ++++C   KD+ +G+ +H+ +L+ G+  + ++   L+ +YA C  ++
Sbjct: 21  RKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVN 80

Query: 211 DARQLFDQMPTRDLVTWTVMIGA-----------NKFLL--------------------- 238
           +ARQLFD+   + +V+W VMI             N F L                     
Sbjct: 81  EARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACS 140

Query: 239 ----------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                 D  +G A+I MYAKCGS+  AR +FD M  ++ +SW+ 
Sbjct: 141 SPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 200

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +  AY   G G+++L  +  ML  RV P+RIT++++L AC     +E+G ++ + + +  
Sbjct: 201 LTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVES- 259

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
               DV+  T +  +  + G   +A ++ E +S  +D   W  ++
Sbjct: 260 EYHSDVRVSTALTKMYMKCGAFKDAREVFECLSY-RDVIAWNTMI 303


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/573 (40%), Positives = 337/573 (58%), Gaps = 58/573 (10%)

Query: 63  FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           + S L SC   R++   RQ+H +++  G   + ++A KL+ +YA    +  A  LF+GM 
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +R+   W+V++  +++        + +R  +  G++ D++T P  ++AC    D+  GR 
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------- 231
           +H+ VL +    D FVCA LVDMYAKC  +DDAR +FD++  RD V W  MI        
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 232 -----------GANKFLLDVILGTAVIDMYAKCGSIDSAREI--------FDR------- 265
                       AN     +    + I   A   ++   RE+        FDR       
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTS 304

Query: 266 --------------------MRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLP 304
                               + ++ ++SW+AMI  YG HG   +AL LF  M + ++V P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           + ITFV +L AC+H G+V+E    F  M D ++++P V+H+TC+VD+LG AGR +EA  L
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I+ M ++ D G+WGALL  C+IHKNV+L E+A + L+E +P++ G+YVLLSN+YA +G+W
Sbjct: 425 IKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKW 484

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           +  A++R LMT R LKKI G +WIE++ K H F VGD++HP+S EIY  L  L   +  A
Sbjct: 485 EKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDA 544

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+PDT    HDV ++ K   + SHSE+LAIAFGLI+TP GT + + KNLRVC DCH  I
Sbjct: 545 GYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVI 604

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S I +R II+RD NR+HHF  G CSC+DYW
Sbjct: 605 KLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 330/558 (59%), Gaps = 55/558 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            ++QVHA I+  G   +  +  KL+ +     ++T A  LF  +   DS  +  ++   S
Sbjct: 106 NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTS 165

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K    I+    +R  +  G    +YT   VI+AC D   + +G+ IH  V+  G   D +
Sbjct: 166 KFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMY 225

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------ 230
           V AAL+ +YAK   +  A+++FD MP R ++ W  +                        
Sbjct: 226 VQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG 285

Query: 231 -----------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAR 260
                            +GA             N F L+V+LGT++I+MY +CG++  AR
Sbjct: 286 FQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAR 345

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           E+FD M+++NV++W+AMI+ YG HG G++A++LF  M +    PN ITFV++L AC+H+G
Sbjct: 346 EVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSG 405

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES-MSVEKDEGLWGA 379
           L+++G R+FSSM + + + P V+H  CMVD+ GRAG L++A + I+  +  E    +W +
Sbjct: 406 LIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTS 465

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +LGACR+H+N DL    A+ +L  +P+NPGHYV+LSN+YA AGR   V  +R++MTRRRL
Sbjct: 466 MLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRL 525

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK  G++ IE+  K + FS+GD +HPQ+  IYR L  L  +   +GY+P     +HD++E
Sbjct: 526 KKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEE 585

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E +   L  HSEKLA+AFGL+ T +G  IRI+KNLR+C DCHS IKH+S I  R IIVRD
Sbjct: 586 EERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 645

Query: 560 ANRFHHFEGGACSCRDYW 577
             RFHHF+ G+CSC DYW
Sbjct: 646 KFRFHHFKDGSCSCLDYW 663


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/558 (39%), Positives = 330/558 (59%), Gaps = 55/558 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            ++QVHA I+  G   +  +  KL+ +     ++T A  LF  +   DS  +  ++   S
Sbjct: 42  NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTS 101

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K    I+    +R  +  G    +YT   VI+AC D   + +G+ IH  V+  G   D +
Sbjct: 102 KFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMY 161

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------ 230
           V AAL+ +YAK   +  A+++FD MP R ++ W  +                        
Sbjct: 162 VQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG 221

Query: 231 -----------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAR 260
                            +GA             N F L+V+LGT++I+MY +CG++  AR
Sbjct: 222 FQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAR 281

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           E+FD M+++NV++W+AMI+ YG HG G++A++LF  M +    PN ITFV++L AC+H+G
Sbjct: 282 EVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSG 341

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES-MSVEKDEGLWGA 379
           L+++G R+FSSM + + + P V+H  CMVD+ GRAG L++A + I+  +  E    +W +
Sbjct: 342 LIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTS 401

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +LGACR+H+N DL    A+ +L  +P+NPGHYV+LSN+YA AGR   V  +R++MTRRRL
Sbjct: 402 MLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRL 461

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK  G++ IE+  K + FS+GD +HPQ+  IYR L  L  +   +GY+P     +HD++E
Sbjct: 462 KKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEE 521

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E +   L  HSEKLA+AFGL+ T +G  IRI+KNLR+C DCHS IKH+S I  R IIVRD
Sbjct: 522 EERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRD 581

Query: 560 ANRFHHFEGGACSCRDYW 577
             RFHHF+ G+CSC DYW
Sbjct: 582 KFRFHHFKDGSCSCLDYW 599


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 334/616 (54%), Gaps = 107/616 (17%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S + + Q +++H+  +  GT  +  V N L+  YA   ++ DA  +FN M+ +D VSW+ 
Sbjct: 271 SLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNA 330

Query: 129 MVGGFSKVADFINCFE-----------------------------------TFREFIRCG 153
           MV G+++   F   FE                                   TF++ I  G
Sbjct: 331 MVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYG 390

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL------------DIDQFVCAALVD 201
            + +S T+  ++ AC     +  G   H   LK  L              D  V  AL+D
Sbjct: 391 SEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALID 450

Query: 202 MYAKCKVIDDARQLFDQMP--TRDLVTWTVMIGA-------------------------- 233
           MY+KC+    AR +F+ +P   R++VTWTVMIG                           
Sbjct: 451 MYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAP 510

Query: 234 NKFLLDVIL--------------------------------GTAVIDMYAKCGSIDSARE 261
           N + +  IL                                   +IDMY+KCG +D+AR 
Sbjct: 511 NAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARN 570

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M ++N +SW++M++ YG HG+GK+ALD+F  M  +  +P+ I+F+ LLYACSH+G+
Sbjct: 571 VFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGM 630

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V++GL  F  M  D+ V    +HY C++DLL R+GRLD+A K I+ M +E    +W ALL
Sbjct: 631 VDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALL 690

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACR+H NV+LAE A   L+  + +N G Y L+SN+YA A RW+DVA+IR LM +  +KK
Sbjct: 691 SACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKK 750

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +W++ +     F VGD +HP S EIY +L  L  ++++ GY+P+TNF LHDVD+E 
Sbjct: 751 RPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEE 810

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S I    IIVRD++
Sbjct: 811 KNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSS 870

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G+CSC  YW
Sbjct: 871 RFHHFKNGSCSCGGYW 886



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 144/304 (47%), Gaps = 35/304 (11%)

Query: 43  RVPMQMGPDCQFTRS-VDPKFFI--SSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVAN 96
           R+   +G  C+  R+   P  F    +L +C  +   R     H  I   G  +N+ V N
Sbjct: 129 RLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCN 188

Query: 97  KLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIR-- 151
            L+ +Y+   +L DA  +F+ +  +   D +SW+ +V    K ++     + F E     
Sbjct: 189 ALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIV 248

Query: 152 ----CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
                  + D  ++  ++ AC   K +   + IH   +++G   D FVC AL+D YAKC 
Sbjct: 249 HEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCG 308

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267
            + DA  +F+ M  +D+V+W  M+                  Y + G   +A E+F  MR
Sbjct: 309 SMKDAVNVFNVMEFKDVVSWNAMVTG----------------YTQSGKFGAAFELFKNMR 352

Query: 268 QKN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           ++N    VI+WSA+IA Y   G G++ALD F  M+     PN +T +SLL AC+  G + 
Sbjct: 353 KENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALS 412

Query: 324 EGLR 327
           +G+ 
Sbjct: 413 QGME 416



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 159/357 (44%), Gaps = 43/357 (12%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT---NLI-----------------VA 95
           R V P  F S L  CR++  +RQ+H +I+A G L+   +L+                 + 
Sbjct: 27  RDVSPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLG 86

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
             ++  Y    A +DA ++   +    +V W+++V    +              +R G +
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D +TLP+ ++AC +      G   H ++  +G + + FVC ALV MY++   ++DA  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 216 FDQMPTR---DLVTWTVMIGANKFLLDVILGT---AVIDMYAKCGSIDSAREIFDRMRQK 269
           FD++  +   D+++W  ++ A+      + G+     +D++++  +I   +   +R    
Sbjct: 207 FDEITRKGIDDVISWNSIVAAH------VKGSNPRTALDLFSEMTTIVHEKATNER---S 257

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++IS   ++ A        +  ++    + +    +     +L+   +  G +++ + +F
Sbjct: 258 DIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVF 317

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK---DEGLWGALLGA 383
           + M  +F    DV  +  MV    ++G+   A +L ++M  E    D   W A++  
Sbjct: 318 NVM--EF---KDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAG 369



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/183 (19%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------GANKFLL 238
           +G D+     A+L+    +C+ ++  RQ+  ++    L+++   +         ++ ++ 
Sbjct: 25  TGRDVSPTHFASLLK---ECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVS 81

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
              LGT V+  Y  CG+   A  + +R+     + W+ ++ A+   G+  +A+ +   ML
Sbjct: 82  PKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRML 141

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
            +   P+  T    L AC        G   F  +        +V     +V +  R+G L
Sbjct: 142 RAGTKPDHFTLPYALKACGELPSYRSG-SAFHGLICCNGFESNVFVCNALVAMYSRSGSL 200

Query: 359 DEA 361
           ++A
Sbjct: 201 EDA 203


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/573 (37%), Positives = 344/573 (60%), Gaps = 56/573 (9%)

Query: 61  KFFISSLLS-CRNI--FQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           KF ++SLLS C  +  F + +Q+H+ ++  G  +++ V   L+ +YA   A+ ++  +FN
Sbjct: 248 KFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFN 307

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M   + +SW+ ++ G+ +        + F   +   +  + +T   V++AC    D  +
Sbjct: 308 TMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGI 367

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           G+ +H   +K GL     V  +L++MYA+   ++ AR+ F+ +  ++L+++     AN  
Sbjct: 368 GKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAK 427

Query: 237 LLD----------------------------------------------------VILGT 244
            LD                                                    + +  
Sbjct: 428 ALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINN 487

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           A+I MY+KCG+ ++A ++F+ M  +NVI+W+++I+ +  HG   KAL+LF  ML   V P
Sbjct: 488 ALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKP 547

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N +T++++L ACSH GL++E  + F+SM  + ++ P ++HY CMVDLLGR+G L EA++ 
Sbjct: 548 NEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEF 607

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I SM  + D  +W   LG+CR+H+N  L E AAK +LER+P +P  Y+LLSN+YA+ GRW
Sbjct: 608 INSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRW 667

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
            DVA +R  M +++L K  G++WIEV+N++H+F VGD++HPQ+ +IY  L  L+ K++  
Sbjct: 668 DDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNL 727

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GYIP+T+F LHDV++E K   L+ HSEK+A+A+ LI+TP+   IR+ KNLRVCGDCH+ I
Sbjct: 728 GYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAI 787

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K++S +T R I+VRDANRFHH + G CSC DYW
Sbjct: 788 KYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 63/303 (20%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM--KERDSVSWSVMVGGFS 134
           + +H +++  G   + ++ N L+ +Y+      +A ++F  M   +RD VSWS ++  F+
Sbjct: 59  KLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFA 118

Query: 135 KVADFINCFETFREFIRCGMQL---DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
             +       TF   ++C   +   + Y    ++R+C +      G  I   +LK+G   
Sbjct: 119 NNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGY-F 177

Query: 192 DQFVC--AALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIG---------------- 232
           D  VC   AL+DM+ K  + I  AR +FD+M  ++LVTWT+MI                 
Sbjct: 178 DSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFC 237

Query: 233 --------ANKFLL------------------------------DVILGTAVIDMYAKCG 254
                    +KF L                              DV +G  ++DMYAK  
Sbjct: 238 RLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSA 297

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           +++++R+IF+ M   NV+SW+A+I+ Y    Q ++A+ LF  ML   V PN  TF S+L 
Sbjct: 298 AVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLK 357

Query: 315 ACS 317
           AC+
Sbjct: 358 ACA 360



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 143/338 (42%), Gaps = 69/338 (20%)

Query: 10  LVSISAKLRFFSSSTTAAIALEPHGHE-QNPMNPRVPMQMGPDCQFTRSVDPKFFISSLL 68
           LVS SA +  F++++  + AL    H  Q   N   P +           +P FF + L 
Sbjct: 107 LVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLA 166

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
               + +     + +  G  L ++     L         +  A  +F+ M+ ++ V+W++
Sbjct: 167 IFAFLLKTGYFDSHVCVGCALIDMFTKGGL--------DIQSARMVFDKMQHKNLVTWTL 218

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+  +S++    +  + F   +      D +TL  ++ AC + +   +G+ +H  V++SG
Sbjct: 219 MITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSG 278

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------- 233
           L  D FV   LVDMYAK   ++++R++F+ M   ++++WT +I                 
Sbjct: 279 LASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFC 338

Query: 234 ---------NKFLLDVIL------------------------------GTAVIDMYAKCG 254
                    N F    +L                              G ++I+MYA+ G
Sbjct: 339 NMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSG 398

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
           +++ AR+ F+ + +KN+IS++    A        KALD
Sbjct: 399 TMECARKAFNILFEKNLISYNTAADA------NAKALD 430



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 137/308 (44%), Gaps = 72/308 (23%)

Query: 143 FETFREFIRCGMQLD-SYTLPFV-----IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           FE+ R+ I    +LD + T P +     ++AC    ++ +G+L+H  ++ SGL +D  + 
Sbjct: 21  FESLRKAIS---RLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLL 77

Query: 197 AALVDMYAKCKVIDDARQLF----------------------DQMPTRDLVTWTVMIGAN 234
            +L+ +Y+KC   ++A  +F                      + M +R L+T+  M+  +
Sbjct: 78  NSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCS 137

Query: 235 K-------------------------------FLLD-------VILGTAVIDMYAKCG-S 255
           +                               FLL        V +G A+IDM+ K G  
Sbjct: 138 RNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLD 197

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I SAR +FD+M+ KN+++W+ MI  Y   G    A+DLF  +L S   P++ T  SLL A
Sbjct: 198 IQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSA 257

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C        G +L S +     +  DV     +VD+  ++  ++ + K+  +M +  +  
Sbjct: 258 CVELEFFSLGKQLHSWVIRS-GLASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LHHNVM 315

Query: 376 LWGALLGA 383
            W AL+  
Sbjct: 316 SWTALISG 323


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/556 (39%), Positives = 328/556 (58%), Gaps = 56/556 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HA  +  G  +N++V N L+ +YA    ++     F+ M  +D +SW+    G+++ 
Sbjct: 281 KEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQN 340

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             ++   E  R+    GM +D+  +  ++ ACR    +   + IH   ++ GL  D  + 
Sbjct: 341 KCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS-DPVLQ 399

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------ANK-------------- 235
             ++D+Y +C +ID A ++F+ +  +D+V+WT MI        ANK              
Sbjct: 400 NTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLE 459

Query: 236 ---------------------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                                            F+L+  +   ++DMYA+CGS++ A +I
Sbjct: 460 PDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKI 519

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F   + +N+I W+AMI+AYG HG G+ A++LF  M   +++P+ ITF++LLYACSH+GLV
Sbjct: 520 FTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLV 579

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EG      M  ++ + P  +HYTC+VDLLGR   L+EA ++++SM  E    +W ALLG
Sbjct: 580 NEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLG 639

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N ++ E+AA+ LLE    NPG+YVL+SNV+A  GRW+DV ++R  M    L K 
Sbjct: 640 ACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKN 699

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEV 501
           PG +WIEV NKIH F   D  HP+ ++IY+ L  ++EKL+   GY+  T F LH+V EE 
Sbjct: 700 PGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEE 759

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           KV  LY HSE+LAIA+GL+AT EGT IR+ KNLRVCGDCHSF   VS    R +IVRDA+
Sbjct: 760 KVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDAS 819

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC D+W
Sbjct: 820 RFHHFKDGMCSCGDFW 835



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 192/416 (46%), Gaps = 65/416 (15%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F ++L +C +   I+   Q+HA I+  G + ++ VAN L+ +Y     + +A  +F  ++
Sbjct: 163 FAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE 222

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D V+W+ M+ GF +   +    E F +     ++ D  ++  +I A      ++ G+ 
Sbjct: 223 GKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT----------- 228
           IH   +K+G D +  V   L+DMYAKC  +    + FD M  +DL++WT           
Sbjct: 283 IHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKC 342

Query: 229 --------------------VMIGA----------------------NKFLLDVILGTAV 246
                                MIG+                         L D +L   +
Sbjct: 343 YLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTI 402

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           ID+Y +CG ID A  IF+ +  K+V+SW++MI+ Y ++G   KAL++F  M  + + P+ 
Sbjct: 403 IDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDY 462

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           +T VS+L A      +++G  +   +    F +   + +   +VD+  R G +++A K+ 
Sbjct: 463 VTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSVEDAYKIF 520

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNVYA 419
            + +  ++  LW A++ A  +H      E A +  +  + +   P H   L+ +YA
Sbjct: 521 -TCTKNRNLILWTAMISAYGMH---GYGEAAVELFMRMKDEKIIPDHITFLALLYA 572



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 131/282 (46%), Gaps = 50/282 (17%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y    ++ DA  +F+ M ER   +W+ M+GG+    + +   E +RE    G+  DSYT
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
            P +++AC   +D+  G  IH + +K G D   FV  +LV +YAKC  I+ AR+LFD+M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 221 TR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
            R D+V+W                                                ++I+
Sbjct: 121 VRNDVVSWN-----------------------------------------------SIIS 133

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           AY  +G   +AL LF  ML + V+ N  TF + L AC  +  ++ G+++ +++     V 
Sbjct: 134 AYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVL 193

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            DV     +V +  R G++ EA  +  ++   KD   W ++L
Sbjct: 194 -DVYVANALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSML 233



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 187/452 (41%), Gaps = 82/452 (18%)

Query: 57  SVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S D   F   L +C    ++F   ++H   +  G  + + V N L+ +YA    +  A  
Sbjct: 55  SFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARK 114

Query: 114 LFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           LF+ M  R D VSW+ ++  +S           F E ++ G+  ++YT    ++AC D  
Sbjct: 115 LFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSS 174

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI- 231
            I +G  IH  +LKSG  +D +V  ALV MY +   + +A  +F  +  +D+VTW  M+ 
Sbjct: 175 FIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLT 234

Query: 232 -------------------------------------GANKFLLD--------------- 239
                                                G   +LL+               
Sbjct: 235 GFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDS 294

Query: 240 -VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
            +++G  +IDMYAKC  +      FD M  K++ISW+   A Y  +    +AL+L   + 
Sbjct: 295 NILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQ 354

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD--DFAVR---PDVKHYTCMVDLLG 353
              +  +     S+L AC        GL     + +   + +R    D      ++D+ G
Sbjct: 355 MEGMDVDATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYG 407

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
             G +D A+++ ES+   KD   W +++ +C +H  +    +   S ++     P +  L
Sbjct: 408 ECGIIDYAVRIFESIEC-KDVVSWTSMI-SCYVHNGLANKALEVFSSMKETGLEPDYVTL 465

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           +S + A          +  L T ++ K+I G+
Sbjct: 466 VSILSA----------VCSLSTLKKGKEIHGF 487


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/557 (41%), Positives = 318/557 (57%), Gaps = 58/557 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H   V  G    L V N L+ +Y     LT+AH +F GM  RD V+W+ ++    +   
Sbjct: 190 MHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGK 249

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA- 197
                E F   +  G+  D  TL  +  A     D +  + +H  V + G D+   +   
Sbjct: 250 VAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGN 309

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLV-------------------------------- 225
           A+VDMYAK   ID A+++FD +P RD+V                                
Sbjct: 310 AMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLK 369

Query: 226 ----TWTVMIGANKFL-------------------LDVILGTAVIDMYAKCGSIDSAREI 262
               T+  ++ A  +L                   LDV + T +ID+YAKCG +  A  +
Sbjct: 370 PIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFL 429

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M +++   W+A+IA  G HG G KAL LF  M    + P+ +TFVSLL ACSH GLV
Sbjct: 430 FEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLV 489

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G   F  M   + + P  KHYTCMVD+LGRAG+LDEA + I+SM ++ D  +WGALLG
Sbjct: 490 DQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLG 549

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH NV++ ++A+++L E  P+N G+YVL+SN+YA  G+W  V  +R L+ R+ L+K 
Sbjct: 550 ACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKT 609

Query: 443 PGWTWIEVENKIHQFSVGDST--HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           PGW+ +EV+  +  F  G  T  HPQ EEI R L  L  K++ AGY+PD +F L DV+E+
Sbjct: 610 PGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEED 669

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L +HSE+LAIAFG+I TP GT + I KNLRVCGDCHS  K++S IT R IIVRDA
Sbjct: 670 EKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDA 729

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSC D+W
Sbjct: 730 NRFHHFKDGHCSCGDFW 746



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 184/395 (46%), Gaps = 60/395 (15%)

Query: 78  QVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           Q+HA  +  G L  N+  +  L++ Y     + +A+ +F+ M ERD  +W+ M+ G  + 
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +        +  G+  D+ TL  V+  C    D  +  ++H   +K GL  + FVC
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVC 206

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK--------------------- 235
            AL+D+Y K  ++ +A  +F  M  RDLVTW  +I AN+                     
Sbjct: 207 NALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC 266

Query: 236 --FLLDVILGTAV--------------------------------IDMYAKCGSIDSARE 261
              L  V L +AV                                +DMYAK   ID+A++
Sbjct: 267 PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK 326

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTG 320
           +FD +  ++V+SW+ +I  Y  +G   +A+ ++  M +   L P + TFVS+L A S+ G
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLG 386

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +++G+R+  ++     +  DV   TC++DL  + G+L EA+ L E M   +  G W A+
Sbjct: 387 GLQQGMRMH-ALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMP-RRSTGPWNAI 444

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           +    +H +   A ++  S ++++   P H   +S
Sbjct: 445 IAGLGVHGHGAKA-LSLFSQMQQEEIKPDHVTFVS 478


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/556 (41%), Positives = 328/556 (58%), Gaps = 59/556 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMKERDSVSWSVMVGGFSK 135
           Q+H  ++  G      V   L+ +Y     +  A  +F  N      +V ++ ++ G+S 
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            + F +    FR+  + G+ +++ T+  +I  C     +  G  +H   ++ GLD D  V
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------- 230
              L+ MY +C  +D AR+LFD MP + L+TW  M                         
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI 256

Query: 231 ----------------IGANK-------------FLLDVILGTAVIDMYAKCGSIDSARE 261
                           +GA+              F  +  L  A+I+MYA+CG++  AR 
Sbjct: 257 VPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARA 316

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           IFD M +KNVISW+A+IA YG HGQG+ A+ LF  M+SS  LP+   FVS+L ACSH GL
Sbjct: 317 IFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGL 376

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            E+GL  F++M  D+ ++P  +HY+C+VDLLGRAGRL+EA KLI SMSVE D  +WGALL
Sbjct: 377 TEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALL 436

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC+IH+NV+LAE+A + ++E +P N G+YVLLSN+++ AG  + + ++R +M  R+LKK
Sbjct: 437 GACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKK 496

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +++E + +IH F  GD THPQ++EIY ML  L + ++  G   D + E    +EE+
Sbjct: 497 EPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQE--SRNEEL 554

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
             G +  HSEKLAIAFGLI T  GT I ++KNLRVCGDCH F+K VS I  R ++VRDA 
Sbjct: 555 ITG-MGVHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDAT 613

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC+DYW
Sbjct: 614 RFHHFKNGVCSCKDYW 629



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 155/348 (44%), Gaps = 65/348 (18%)

Query: 108 LTDAHALFNGMK-----ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
           +T  H LF         +  + SW+  +   ++   F      + + +  G   +++T P
Sbjct: 1   MTRPHPLFPYANKWLDLQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFP 60

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ-MPT 221
           F  ++C      + G  +H  V+K+G + + FV  +L+ MY KC  I  AR++FD+   +
Sbjct: 61  FAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHS 120

Query: 222 RDL---------------------------------VTWTVMIG---------------- 232
           R+L                                 V    M+G                
Sbjct: 121 RNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTS 180

Query: 233 ----ANKFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
               + +F LD  + +G  ++ MY +CGS+D AR++FD M +K +I+W+AMI+ Y  +G 
Sbjct: 181 LHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGL 240

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHY 345
               LDL+  M  + ++P+ +T V +L +C+H G    G  +   +    F   P +K+ 
Sbjct: 241 AGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN- 299

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             ++++  R G L +A  + + M+ EK+   W A++    +H   +LA
Sbjct: 300 -ALINMYARCGNLVKARAIFDGMT-EKNVISWTAIIAGYGMHGQGELA 345



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 15/219 (6%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSV-DPKFFISSLLSCRNI---FQIRQVHAQIVAGGTL 89
           G+ QN +   V + +    +FT  V DP   +  L SC ++      R+V  +I   G  
Sbjct: 234 GYAQNGLAGHV-LDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFG 292

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            N  + N L+ +YA    L  A A+F+GM E++ +SW+ ++ G+          + F E 
Sbjct: 293 FNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM 352

Query: 150 IRCGMQLDSYTLPFVIRACR-----DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           I      D      V+ AC      ++       +  D  L+ G   + + C  +VD+  
Sbjct: 353 ISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPG--PEHYSC--VVDLLG 408

Query: 205 KCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVIL 242
           +   +++AR+L   M    D   W  ++GA K   +V L
Sbjct: 409 RAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVEL 447


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/555 (39%), Positives = 328/555 (59%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+ ++     ++L V+  L+ +Y+    L DA   FN + E+D ++W+ ++ G+S+ 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            + +     F E  + G+  +  TL  ++++    + + + R +H + +KSG   D +V 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 197 AALVDMYAKCKVIDDARQLF------DQMPTRDLVTWTVMIGANK--------------- 235
            +L+D Y KC  ++DA ++F      D +    ++T     G  +               
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 236 ---------------------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                                            F+LD+  G ++++MYAKCGSID A   
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 591

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  + ++ ++SWSAMI     HG G++AL LF  ML   V PN IT VS+L AC+H GLV
Sbjct: 592 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 651

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            E    F SM + F  +P  +HY CM+DLLGRAG+++EA++L+  M  E +  +WGALLG
Sbjct: 652 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 711

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           A RIHK+V+L   AA+ L   +P+  G +VLL+N+YA+AG+W++VA++R LM   ++KK 
Sbjct: 712 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKE 771

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV++K++ F VGD +H +S+EIY  L  LS+ ++ AGY+P    +LHDV++  K
Sbjct: 772 PGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEK 831

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              LY HSEKLA+AFGLIATP+G  IR+ KNLRVC DCH+  K++  I  R IIVRD NR
Sbjct: 832 ELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINR 891

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G+CSC DYW
Sbjct: 892 FHHFKDGSCSCGDYW 906



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 134/295 (45%), Gaps = 54/295 (18%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           SV     +S   + +++    Q+HA I   G   +  + N L+ +Y+  +    A  L +
Sbjct: 56  SVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVD 115

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
              E D VSWS ++ G+++          F E    G++ + +T   V++AC   KD+ +
Sbjct: 116 ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRI 175

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------ 230
           G+ +H +V+ SG + D FV   LV MYAKC    D+++LFD++P R++V+W  +      
Sbjct: 176 GKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQ 235

Query: 231 ------------------IGANKFLL------------------------------DVIL 242
                             I  N+F L                              D   
Sbjct: 236 XDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
             A++DMYAK G +  A  +F++++Q +++SW+A+IA    H   ++AL+L   M
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 38/258 (14%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLL-SCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYI 101
           M++ PD         +F  SSLL +C N+    Q +Q+H  I+  G + ++   N L+ +
Sbjct: 528 MELKPD---------RFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 578

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           YA   ++ DA   F+ + ER  VSWS M+GG ++        + F + ++ G+  +  TL
Sbjct: 579 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 638

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
             V+ AC     +   +L  + + +  G    Q   A ++D+  +   I++A +L ++MP
Sbjct: 639 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 698

Query: 221 TR-DLVTWTVMIGANKFLLDVILGTAVIDM------------------YAKCGSIDSARE 261
              +   W  ++GA +   DV LG    +M                  YA  G  ++  E
Sbjct: 699 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 758

Query: 262 IFDRMRQKNV-----ISW 274
           +   MR   V     +SW
Sbjct: 759 VRRLMRDSKVKKEPGMSW 776


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/555 (39%), Positives = 328/555 (59%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+ ++     ++L V+  L+ +Y+    L DA   FN + E+D ++W+ ++ G+S+ 
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 438

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            + +     F E  + G+  +  TL  ++++    + + + R +H + +KSG   D +V 
Sbjct: 439 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 498

Query: 197 AALVDMYAKCKVIDDARQLF------DQMPTRDLVTWTVMIGANK--------------- 235
            +L+D Y KC  ++DA ++F      D +    ++T     G  +               
Sbjct: 499 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 558

Query: 236 ---------------------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                                            F+LD+  G ++++MYAKCGSID A   
Sbjct: 559 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 618

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  + ++ ++SWSAMI     HG G++AL LF  ML   V PN IT VS+L AC+H GLV
Sbjct: 619 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 678

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            E    F SM + F  +P  +HY CM+DLLGRAG+++EA++L+  M  E +  +WGALLG
Sbjct: 679 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 738

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           A RIHK+V+L   AA+ L   +P+  G +VLL+N+YA+AG+W++VA++R LM   ++KK 
Sbjct: 739 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKE 798

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV++K++ F VGD +H +S+EIY  L  LS+ ++ AGY+P    +LHDV++  K
Sbjct: 799 PGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEK 858

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              LY HSEKLA+AFGLIATP+G  IR+ KNLRVC DCH+  K++  I  R IIVRD NR
Sbjct: 859 ELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINR 918

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G+CSC DYW
Sbjct: 919 FHHFKDGSCSCGDYW 933



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 176/381 (46%), Gaps = 56/381 (14%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           SV     +S   + +++    Q+HA I   G   +  + N L+ +Y+  +    A  L +
Sbjct: 56  SVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVD 115

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
              E D VSWS ++ G+++          F E    G++ + +T   V++AC   KD+ +
Sbjct: 116 ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRI 175

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------ 230
           G+ +H +V+ SG + D FV   LV MYAKC    D+++LFD++P R++V+W  +      
Sbjct: 176 GKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQ 235

Query: 231 ------------------IGANKFLL------------------------------DVIL 242
                             I  N+F L                              D   
Sbjct: 236 IDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFS 295

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             A++DMYAK G +  A  +F++++Q +++SW+A+IA    H   ++AL+L   M  S +
Sbjct: 296 ANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGI 355

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN  T  S L AC+  GL E G +L SS+     +  D+     +VD+  +   L++A 
Sbjct: 356 CPNIFTLSSALKACAGMGLKELGRQLHSSLM-KMDMESDLFVSVGLVDMYSKCDLLEDA- 413

Query: 363 KLIESMSVEKDEGLWGALLGA 383
           ++  ++  EKD   W A++  
Sbjct: 414 RMAFNLLPEKDLIAWNAIISG 434



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 188/413 (45%), Gaps = 61/413 (14%)

Query: 61  KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F +SS+++     R+  + + +H  ++  G   +   AN L+ +YA    L DA ++F 
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +K+ D VSW+ ++ G           E   +  R G+  + +TL   ++AC       +
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKEL 377

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------ 230
           GR +H  ++K  ++ D FV   LVDMY+KC +++DAR  F+ +P +DL+ W  +      
Sbjct: 378 GRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 437

Query: 231 ------------------IGANKFLLDVILGT---------------------------- 244
                             IG N+  L  IL +                            
Sbjct: 438 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 497

Query: 245 --AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             ++ID Y KC  ++ A  IF+     +++S+++MI AY  +GQG++AL LF  M    +
Sbjct: 498 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMEL 557

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+R    SLL AC++    E+G +L   +   +    D+     +V++  + G +D+A 
Sbjct: 558 KPDRFVCSSLLNACANLSAFEQGKQLHVHIL-KYGFVLDIFAGNSLVNMYAKCGSIDDAG 616

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           +    ++ E+    W A++G    H +   A      +L ++  +P H  L+S
Sbjct: 617 RAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQLFNQML-KEGVSPNHITLVS 667



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 132/319 (41%), Gaps = 69/319 (21%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++  C   K +  G  IH  + KSGL  D  +   L+++Y+KC+    AR+L D+    D
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPD 121

Query: 224 LVTWTVMIGA------------------------NKFLL--------------------- 238
           LV+W+ +I                          N+F                       
Sbjct: 122 LVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHG 181

Query: 239 ---------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    DV +   ++ MYAKC     ++ +FD + ++NV+SW+A+ + Y       +
Sbjct: 182 VVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGE 241

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYAC------SHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           A+ LF  M+ S + PN  +  S++ AC      S   ++   L      WD F+      
Sbjct: 242 AVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSA----- 296

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
               +VD+  + G L +A+ + E +  + D   W A++  C +H++ + A +     ++R
Sbjct: 297 --NALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQA-LELLGQMKR 352

Query: 404 QPQNPGHYVLLSNVYANAG 422
               P  + L S + A AG
Sbjct: 353 SGICPNIFTLSSALKACAG 371



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 41/285 (14%)

Query: 22  SSTTAAIALEPHGHEQNPMNPRVPMQ---MGPDCQFTRSVDPKFFISSLL-SCRNIF--- 74
           S T+   A   +G  +  +   + MQ   + PD         +F  SSLL +C N+    
Sbjct: 528 SFTSMITAYAQYGQGEEALKLFLEMQDMELKPD---------RFVCSSLLNACANLSAFE 578

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +Q+H  I+  G + ++   N L+ +YA   ++ DA   F+ + ER  VSWS M+GG +
Sbjct: 579 QGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLA 638

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK-SGLDIDQ 193
           +        + F + ++ G+  +  TL  V+ AC     +   +L  + + +  G    Q
Sbjct: 639 QHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQ 698

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDM--- 249
              A ++D+  +   I++A +L ++MP   +   W  ++GA +   DV LG    +M   
Sbjct: 699 EHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFI 758

Query: 250 ---------------YAKCGSIDSAREIFDRMRQKNV-----ISW 274
                          YA  G  ++  E+   MR   V     +SW
Sbjct: 759 LEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSW 803


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/583 (40%), Positives = 336/583 (57%), Gaps = 59/583 (10%)

Query: 53  QFTRSVDPKFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
            F  S    ++ +SLL    S + +   +Q+HA++   G   NL +A KL+  Y++  +L
Sbjct: 50  SFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSL 109

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            +AH LF+ + + +   W+V++  ++           + + +  G++ D++TLPFV++AC
Sbjct: 110 RNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKAC 169

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ-----------LFD 217
                I  GR+IH+ V++SG + D FV AALVDMYAKC  + DAR            L++
Sbjct: 170 SALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWN 229

Query: 218 QM--------------------------PTRDLVTWTVMIGAN----------------- 234
            M                          PT   +   +   A+                 
Sbjct: 230 SMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRH 289

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
            F  +  + TA+IDMYAKCGS+  A  +F+R+R+K V+SW+A+I  Y  HG   +ALDLF
Sbjct: 290 GFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLF 349

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+     P+ ITFV  L ACS   L++EG  L++ M  D  + P V+HYTCMVDLLG 
Sbjct: 350 ERMMK-EAQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGH 408

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            G+LDEA  LI  M V  D G+WGALL +C+ H NV+LAE+A + L+E +P + G+YV+L
Sbjct: 409 CGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVIL 468

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           +N+YA +G+W+ VA++R LM  + +KK    +WIEV+NK++ F  GD +HP S  IY  L
Sbjct: 469 ANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAEL 528

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             L   +  AGY+PDT    HDV+E+ K   + SHSE+LAIAFGLI+T  GT + I KNL
Sbjct: 529 KRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNL 588

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+C DCH  IK +S IT R I VRD NR+HHF  G CSC DYW
Sbjct: 589 RICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 324/572 (56%), Gaps = 57/572 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +++ L +C ++  +   +Q+HAQIV     +++ V+  L  +Y    A+ DA  +F  + 
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD ++W+ M+GG             F   ++  +  D  T   ++ AC     +  G+ 
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKE 368

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------- 232
           IH   +K GL  D     AL++MY+K   + DARQ+FD+MP RD+V+WT ++G       
Sbjct: 369 IHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQ 428

Query: 233 -----------------ANKF------------------------------LLDVILGTA 245
                            ANK                                 D+ +  A
Sbjct: 429 VVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANA 488

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ MY KCGS++ A  + + M  ++V++W+ +I     +G+G +AL  F +M S  + PN
Sbjct: 489 LMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPN 548

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
             TFV+++ AC    LVEEG R F+SM  D+ + P  KHY CMVD+L RAG L EA  +I
Sbjct: 549 ATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVI 608

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            +M  +    +WGALL ACR H NV++ E AA+  L+ +PQN G YV LS +YA AG W+
Sbjct: 609 LTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWR 668

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           DVAK+R LM  R +KK PG +WIEV  ++H F  GD +HP++EEIY  L  L+++++  G
Sbjct: 669 DVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLG 728

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PDT F +HD+D+E K   +  HSEKLAIA+GLI+TP  T IR+ KNLRVC DCH+  K
Sbjct: 729 YVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATK 788

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S IT R II RDA+RFHHF+ G CSC DYW
Sbjct: 789 FISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 182/388 (46%), Gaps = 59/388 (15%)

Query: 53  QFTRSVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           Q    VD   ++  L SC   +++   +QVH  I+  G   N+ + N LL +Y    ++ 
Sbjct: 37  QKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVN 96

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           +A  LF+    +  VSW+VM+ G++        F  F    + G++ D +T   ++ AC 
Sbjct: 97  EARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACS 156

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
               +  GR +H  V+++GL  +  V  AL+ MYAKC  + DAR++FD M +RD V+WT 
Sbjct: 157 SPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTT 216

Query: 230 MIGA--------------NKFLLDVILGTAV--IDMYAKCGS------------------ 255
           + GA              +  L + +  + +  +++ + CGS                  
Sbjct: 217 LTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESE 276

Query: 256 --------------------IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                               +  ARE+F+ +  ++VI+W+ MI      GQ ++A  +F 
Sbjct: 277 HHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFH 336

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            ML   V P+R+T++++L AC+  G +  G  + +    D  V  DV+    ++++  +A
Sbjct: 337 RMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLV-SDVRFGNALINMYSKA 395

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGA 383
           G + +A ++ + M  ++D   W AL+G 
Sbjct: 396 GSMKDARQVFDRMP-KRDVVSWTALVGG 422


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 334/595 (56%), Gaps = 92/595 (15%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            ++ VHA ++  G   +  + NK+L           +H +F+  KE +   ++ M+ G  
Sbjct: 25  HLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLV 84

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               F    E +    + G+  DS+T PF+++AC    D  +G  +H +V+K+G + D F
Sbjct: 85  LNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAF 144

Query: 195 VCAALVDMYAKC-------KVIDD-------------------------------ARQLF 216
           V  +LV +Y KC       KV DD                               A  +F
Sbjct: 145 VNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVF 204

Query: 217 DQMPTRDLVTWTVM-----------------------------------------IGA-- 233
           D M  +D+V+W+ M                                         +GA  
Sbjct: 205 DGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALE 264

Query: 234 -----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                      N+FL + +LGTA+IDMYAKCG +DSA E+F  MR+K+++ W+A I+   
Sbjct: 265 LGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLA 324

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
             G  K A  LF  M  S + P+  TFV LL AC+H GLV+EG + F+SM   F + P++
Sbjct: 325 MSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEI 384

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY CMVDLLGRAG LDEA +L++SM +E +  +WGALLG CR+H++  L E   K L+ 
Sbjct: 385 EHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIA 444

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            +P N G+YVLLSN+Y+ + +W+D AKIR +M+ R +KK+PG++WIEV+  +H+F VGD+
Sbjct: 445 LEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDT 504

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
           +HP SE+IY  L  L + L+ +GY+P T++ L D++EE K   +  HSEKLAIAFGLI+T
Sbjct: 505 SHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLIST 564

Query: 523 PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
                IR++KNLRVCGDCH  IKH+S  T R IIVRD NRFH F  G+CSC+DYW
Sbjct: 565 APNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 338/579 (58%), Gaps = 59/579 (10%)

Query: 58  VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           V+ + + S L  C +   IR+   VHA ++       + +  +L+ +Y   + L DA  +
Sbjct: 8   VEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRV 67

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            + M ER+ VSW+ M+ G+S+          F E +  G   + +T   V+ +C      
Sbjct: 68  LDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGF 127

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
            +GR IH +V+K+  +   FV ++L+DMYAK   I +AR++FD +P RD+V+ T +I   
Sbjct: 128 QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 187

Query: 232 ---GANKFLLD------------------------------------------------V 240
              G ++  LD                                                V
Sbjct: 188 AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 247

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS- 299
           +L  ++IDMY+KCGS+  +R IFD M ++ VISW+AM+  Y  HG G++A++LF +M   
Sbjct: 248 VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 307

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRPDVKHYTCMVDLLGRAGRL 358
           ++V P+ +TF+++L  CSH G+ + GL +F  M +      P+++HY C+VDL GRAGR+
Sbjct: 308 NKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 367

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA + I+ M  E    +WG+LLGACR+H+NV + E  A+ LLE + +N G+YV+LSN+Y
Sbjct: 368 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 427

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A+AGRW DV  +R+LM  + + K PG +WIE++  +H F   D +HP+ EE++  +  LS
Sbjct: 428 ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 487

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
            K++ AGY+P+ +  L+DVD+E K   L  HSEKLA+AFGLI TP GT +RI+KNLR+C 
Sbjct: 488 IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 547

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+F K +S +  R + +RD NRFHH  GG CSC DYW
Sbjct: 548 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 64/287 (22%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++++      V+  C  +  I  G+ +H  ++K+  +   ++   L+ +Y KC+ + DA
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 213 RQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL------ 242
           R++ D+MP R++V+WT MI                          N+F    +L      
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 243 ------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                                   G++++DMYAK G I  AR +FD + +++V+S +A+I
Sbjct: 125 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 184

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           + Y   G  ++ALDLF  +    +  N +T+ S+L A S    ++ G ++ S +     +
Sbjct: 185 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV-----L 239

Query: 339 RPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           R  +  Y      ++D+  + G L  + ++ +SM  E+    W A+L
Sbjct: 240 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAML 285


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 330/554 (59%), Gaps = 55/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           + HA  +  G    + VA  +L  Y     +  A  +F+ M  ++SVSW+ M+ G+++  
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D       F   +  G+ +   ++   ++AC +   +  G  +H+++++ GLD +  V  
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IGA 233
           AL+ MY+KCK +D A  +FD++  R  V+W  M                        +  
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 234 NKFLL------------------------------DVILGTAVIDMYAKCGSIDSAREIF 263
           + F L                              DV + TA+IDMYAKCG ++ AR +F
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           +  R+++VI+W+AMI  YG HG GK A++LF  M S  ++PN  TF+S+L ACSH GLV+
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVD 481

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG   F+SM +D+ + P ++HY  MVDLLGRAG+LDEA   I+ M ++    ++GA+LGA
Sbjct: 482 EGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGA 541

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C++HKNV+LAE +A+ + E  PQ   ++VLL+N+YANA  W+DVA++R  M +  L+K P
Sbjct: 542 CKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTP 601

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           GW+ I+++N+IH F  G + H Q++EIY  L  L E+++  GY+PDT+  +HDV+++VK 
Sbjct: 602 GWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVEDDVKA 660

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L +HSEKLAIAFGLI T  GT I+I KNLRVC DCH+  K +S +T R II+RD  RF
Sbjct: 661 QLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRF 720

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 721 HHFKDGKCSCGDYW 734



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 156/364 (42%), Gaps = 65/364 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VHAQ+ A G  +  + A  L  +YA  +   DA  +F+ M  RD V+W+ +V G+++ 
Sbjct: 79  RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARN 138

Query: 137 ADFINCFE-TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                  E   R     G + DS TL  V+ AC + + +   R  H   ++SGL+    V
Sbjct: 139 GLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNV 198

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
             A++D Y KC  I  AR +FD MPT++ V+W  MI                        
Sbjct: 199 ATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 234 --------------------------NKFLLDVILGTAVIDMYA------KCGSIDSARE 261
                                     ++ L+ + L + V  M A      KC  +D A  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD + ++  +SW+AMI     +G  + A+ LF  M    V P+  T VS++ A     L
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA-----L 373

Query: 322 VEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
            +    L +     +++R     DV   T ++D+  + GR++ A  L  S + E+    W
Sbjct: 374 ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITW 432

Query: 378 GALL 381
            A++
Sbjct: 433 NAMI 436



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 131/326 (40%), Gaps = 70/326 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +++ C  R D+  GR +H  +   G+D +     AL +MYAKC+   DAR++FD+M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN--------- 270
           P RD V W  ++                  YA+ G    A E+  RM+++          
Sbjct: 121 PVRDRVAWNALVAG----------------YARNGLARMAMEMVVRMQEEEGERPDSITL 164

Query: 271 -------------------------------VISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                                          V   +A++ AY   G  + A  +F  M +
Sbjct: 165 VSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPT 224

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
                N +++ +++   +  G   E L LF+ M ++     DV     +    G  G LD
Sbjct: 225 K----NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL-QACGELGCLD 279

Query: 360 EALK---LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           E ++   L+  + ++ +  +  AL+      K VDLA       L+R+ Q   + ++L  
Sbjct: 280 EGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDE-LDRRTQVSWNAMILG- 337

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKI 442
             A  G  +D  +   L TR +L+ +
Sbjct: 338 -CAQNGCSEDAVR---LFTRMQLENV 359


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/554 (40%), Positives = 325/554 (58%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            +H+ ++  G   ++ V   L+ +Y+ +  LTDA  +F+ + E++ VSW+ ++ G+ +  
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESG 182

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            F      FR  +  G++ DS+TL  ++ AC    D+  GR I   + +SG   + FV  
Sbjct: 183 CFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVAT 242

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV---------------------------- 229
           +LVDMYAKC  +++AR++FD M  +D+V W+                             
Sbjct: 243 SLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRP 302

Query: 230 ----MIG----------------------ANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
               M+G                       ++FL + +LGTA+ID YAKCGS+  A+E+F
Sbjct: 303 DCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVF 362

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             MR+K+ + ++A+I+     G    A  +F  M+   + P+  TFV LL  C+H GLV+
Sbjct: 363 KGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVD 422

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G R FS M   F+V P ++HY CMVDL  RAG L EA  LI SM +E +  +WGALLG 
Sbjct: 423 DGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGG 482

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR+HK+  LAE   K L+E +P N GHYVLLSN+Y+ + RW +  KIR  + ++ ++K+P
Sbjct: 483 CRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLP 542

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +W+EV+  +H+F VGD++HP S +IY  L +L + L  AGY P T F L DV+EE K 
Sbjct: 543 GCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKE 602

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLA+AF LI+T     IR++KNLRVCGDCH  IK VS +T R IIVRD NRF
Sbjct: 603 YFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRF 662

Query: 564 HHFEGGACSCRDYW 577
           HHF  G+CSCRDYW
Sbjct: 663 HHFTEGSCSCRDYW 676



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 60/355 (16%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD-AHALFNGMKERDSVSWSVM 129
           +++ Q +Q H  ++  G   +  + N LL   +LH A T  A  +F      +   ++ +
Sbjct: 14  KSLHQAKQCHCLLLRLGLHQDTYLIN-LLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSG 188
           + G      F +    +    + G   D++T PFV++AC R      +G  +H +V+K+G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------------GANK 235
            D D FV   LV +Y+K   + DAR++FD++P +++V+WT +I             G  +
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFR 192

Query: 236 FLLDVIL-----------------------------------------GTAVIDMYAKCG 254
            LL++ L                                          T+++DMYAKCG
Sbjct: 193 GLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCG 252

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           S++ AR +FD M +K+V+ WSA+I  Y  +G  K+ALD+F  M    V P+    V +  
Sbjct: 253 SMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFS 312

Query: 315 ACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           ACS  G +E G      M  D+F   P +   T ++D   + G + +A ++ + M
Sbjct: 313 ACSRLGALELGNWARGLMDGDEFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGM 365


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/525 (43%), Positives = 309/525 (58%), Gaps = 57/525 (10%)

Query: 59  DPKFFISSLL-----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           +P  F+SS L      C  +   R +  +I    +  N++    ++  Y  +     A  
Sbjct: 108 EPDLFVSSALVDMYSKCGELRDARTLFDEI----SHRNIVSWTSMITGYVQNDDAHRALR 163

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRK 172
           +F+GM ERD +SW+ ++  +++        E F   ++ G +  ++ TL  V+ AC    
Sbjct: 164 VFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 223

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
              +G+ IHD V+K GL+ + FV                                     
Sbjct: 224 SQRLGKCIHDQVIKMGLESNVFV------------------------------------- 246

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                     GT++IDMY KCG ++ AR+ FDRMR+KNV SWSAM+A YG HG  K+AL+
Sbjct: 247 ----------GTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALE 296

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           +F  M  + V PN ITFVS+L ACSH GL+EEG   F +M  +F V P V+HY CMVDLL
Sbjct: 297 VFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLL 356

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAG L EA  LI+ M +  D  +WGALLGACR+HKNVDL E++A+ L E  P+N G+YV
Sbjct: 357 GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYV 416

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLSN+YA+AGRW+DV ++R LM    L K PG++ ++++ ++H F VGD  HPQ E+IY 
Sbjct: 417 LLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYE 476

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  LS KL+  GY+PD    LHDV  E K   L  HSEKLA+AFG++ T  GT I I+K
Sbjct: 477 YLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIK 536

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVCGDCH+ IK +S I  R I+VRD+ RFHHF  G CSC DYW
Sbjct: 537 NLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 139/280 (49%), Gaps = 26/280 (9%)

Query: 113 ALFNGMKERDSV-SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
            LFN   ++ +V SW+ ++   ++  D +     F    +  ++ +  T P  I++C   
Sbjct: 30  TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            D+  GR  H   L  G + D FV +ALVDMY+KC  + DAR LFD++  R++V+WT MI
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 149

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                             Y +      A  +FD M +++VISW+++IA Y  +G   +++
Sbjct: 150 TG----------------YVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESM 193

Query: 292 DLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD---FAVRPDVKHYTC 347
           ++F  M+    +  N +T  ++L AC+H+G      RL   + D      +  +V   T 
Sbjct: 194 EIFHRMVKDGEINYNAVTLSAVLLACAHSG----SQRLGKCIHDQVIKMGLESNVFVGTS 249

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           ++D+  + G+++ A K  + M  EK+   W A++    +H
Sbjct: 250 IIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMH 288


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/568 (37%), Positives = 324/568 (57%), Gaps = 86/568 (15%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N++  N ++  Y  ++ + +A  LFN M  R+++SW+ M+ G+++         + +   
Sbjct: 351 NVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALH 410

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI- 209
           R GM     +L     AC + + +  G+ +H + +K+G   + +VC AL+ +Y K + I 
Sbjct: 411 RKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIG 470

Query: 210 ------------------------------DDARQLFDQMPTRDLVTWTVMIGA------ 233
                                         D+AR +F+ MP+ D+V+WT +I A      
Sbjct: 471 SVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQ 530

Query: 234 ------------------NKFLLDVILG------------------------------TA 245
                             N  +L ++LG                               A
Sbjct: 531 GNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANA 590

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ MY KC S DS + +FD M ++++ +W+ +I  Y  HG G++A+ ++ +M+S+ VLPN
Sbjct: 591 LVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPN 649

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TFV LL+ACSH+GLV+EG + F SM  D+ + P ++HY CMVDLLGRAG +  A   I
Sbjct: 650 EVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFI 709

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
             M +E D  +W ALLGAC+IHKNV++   AA+ L   +P N G+YV+LSN+Y++ G W 
Sbjct: 710 YDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWD 769

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           +VAK+R LM  R + K PG +W++++NK+H F  GD  H Q + IY  L  L   L+  G
Sbjct: 770 EVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATG 829

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PDT+F LHD+DEE K  +L  HSEKLA+A+GL+ TP+G  I+IMKNLR+CGDCH+FIK
Sbjct: 830 YVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIK 889

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSC 573
            VS++T+R I VRD NRFHHF  G+CSC
Sbjct: 890 FVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 119/247 (48%), Gaps = 20/247 (8%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y   + + +A  LF  M ER+ VSW+VM+ G+  +      ++ FR  +  GM 
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMT 220

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-CKVIDDARQ 214
            +   L  V+ A R      +   IH +V K+G + D  V  A+++ Y K   ++D A +
Sbjct: 221 PEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAVK 280

Query: 215 LFDQMPTRDLVTWTVMIGA--------NKF-------LLDVILGTAVIDMYAKCGSIDSA 259
            F+ M  R+  TW+ +I A        + F       L  V   T+++   A+ G ID A
Sbjct: 281 FFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDDA 340

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           + +FD++ + NV+SW+AMI  Y  +    +A DLF  M       N I++  ++   +  
Sbjct: 341 KILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRM----PFRNTISWAGMIAGYARN 396

Query: 320 GLVEEGL 326
           G  E+ L
Sbjct: 397 GRSEQAL 403



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 49/333 (14%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIR 166
           L +A  +F+ M  RD ++W+ M+  +       +   +  + I  G ++  +  L    R
Sbjct: 49  LHEAREVFDSMPFRDIIAWNSMIFAYCNNG-MPDAGRSLADAISGGNLRTGTILLSGYAR 107

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVC-AALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           A R R      R + D     G+ +   V   A+V  Y +   I  AR+LFD MP+RD+ 
Sbjct: 108 AGRVRD----ARRVFD-----GMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVS 158

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           +W  M+                  Y     ++ AR +F+RM ++N +SW+ MI+ Y    
Sbjct: 159 SWNTMLTG----------------YCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIE 202

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL--VEEGLRLF---SSMWDDFAVRP 340
           Q  +A D+F  ML   + P +   VS+L A  H G   + E + +    +    D  V  
Sbjct: 203 QHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGT 262

Query: 341 DV-KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
            +   YT  V++      LD A+K  E M+  ++E  W  ++ A      +D     A +
Sbjct: 263 AILNGYTKDVNM------LDSAVKFFEGMAA-RNEYTWSTIIAALSQAGRID----DAFA 311

Query: 400 LLERQPQN--PGHYVLLSNVYANAGRWQDVAKI 430
           + +R P    P    +L+ + A  GR  D AKI
Sbjct: 312 VYQRDPLKSVPSRTSMLTGL-ARYGRIDD-AKI 342



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 116/286 (40%), Gaps = 57/286 (19%)

Query: 209 IDDARQLFDQMPTRDLVTWTVMI---------GANKFLLDVI------LGTAVIDMYAKC 253
           + +AR++FD MP RD++ W  MI          A + L D I       GT ++  YA+ 
Sbjct: 49  LHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYARA 108

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  AR +FD M  +N ++W+AM+  Y  +G    A  LF  M S  V     ++ ++L
Sbjct: 109 GRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSRDV----SSWNTML 164

Query: 314 YACSHTGLVEEGLRLFSSM------------------------WDDFAV---------RP 340
               H+ L+EE   LF  M                        WD F           +P
Sbjct: 165 TGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGMTPEQP 224

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
           ++      V  LG+ G L+    L+     E+D  +  A+L      K+V++ + A K  
Sbjct: 225 NLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNG--YTKDVNMLDSAVKFF 282

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
                +N   +  +    + AGR  D   +     R  LK +P  T
Sbjct: 283 EGMAARNEYTWSTIIAALSQAGRIDDAFAV---YQRDPLKSVPSRT 325



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   +  G  + L+VAN L+ +Y    +  D+  +F+ M+ERD  +W+ ++ G+++ 
Sbjct: 570 QQIHTIAIKLGMDSGLVVANALVSMY-FKCSSADSLKVFDSMEERDIFTWNTIITGYAQH 628

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQ 193
                    ++  +  G+  +  T   ++ AC     +  G +    +    GL   ++ 
Sbjct: 629 GLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEH 688

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILG 243
           + C  +VD+  +   +  A      MP   D V W+ ++GA K   +V +G
Sbjct: 689 YAC--MVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIG 737



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 16/167 (9%)

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           +A I    + G +  ARE+FD M  +++I+W++MI AY  +G       L   +      
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGG--- 93

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            N  T   LL   +  G V +  R+F    D   VR  V  +  MV    + G +  A K
Sbjct: 94  -NLRTGTILLSGYARAGRVRDARRVF----DGMGVRNTVA-WNAMVTCYVQNGDITLARK 147

Query: 364 LIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPG 409
           L ++M   +D   W  +L G C    +  L E  A++L ER P+  G
Sbjct: 148 LFDAMP-SRDVSSWNTMLTGYC----HSQLME-EARNLFERMPERNG 188


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/545 (40%), Positives = 319/545 (58%), Gaps = 54/545 (9%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G  +++ V   L+ +Y+          LF+ + + D +S++ M+ G++   +  +    F
Sbjct: 244 GLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           RE +  G +++S TL  +I        + + RLI ++ LK G+ +   V  AL  +Y + 
Sbjct: 304 RELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRL 363

Query: 207 KVIDDARQLFDQMPTRDLVTWTVM------------------------------------ 230
             +  ARQLFD+ P + L +W  M                                    
Sbjct: 364 NEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILS 423

Query: 231 -----------------IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                            I + +   +V + TA++DMYAKCGSI  AR++FD M  KNV++
Sbjct: 424 ACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVT 483

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI  YG HG GK+AL LF  ML S + P  +TF+S+LYACSH+GLV EG  +F SM 
Sbjct: 484 WNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMA 543

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +++  +P  +HY CMVD+LGRAG+L  AL+ IE M +E    +WGALLGAC IHKN ++A
Sbjct: 544 NNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMA 603

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
            +A+K L +  P+N G+YVLLSN+Y+    +   A +R ++ +R+L K PG T IE++++
Sbjct: 604 NVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQ 663

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT-NFELHDVDEEVKVGNLYSHSEK 512
            + F+ GD +HPQ+  I+ ML  L+ K+  AGY  +T    LHDV++E K   +  HSEK
Sbjct: 664 QYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEK 723

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LAIAFGLI+T  GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRFHHF+ G CS
Sbjct: 724 LAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICS 783

Query: 573 CRDYW 577
           C DYW
Sbjct: 784 CGDYW 788



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 177/412 (42%), Gaps = 75/412 (18%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +FF++ L +   + Q+ Q+ AQ++  G   +L    KL + +    A+     LFN + +
Sbjct: 15  RFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSK 74

Query: 121 RDSVSWSVMVGGFS-----KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
            D   ++V++ GFS     K + F+  +   R+     ++ D++T  F I A    +D  
Sbjct: 75  PDLFLFNVLIRGFSDNGLPKSSIFL--YTHLRK--XTNLRPDNFTYAFAISAASRLEDER 130

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           +G L+H   +  G+  + FV +A+VD+Y K    + AR++FD MP RD V W  MI    
Sbjct: 131 VGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFS 190

Query: 234 -NKFLLDVI--------------------------------LG----------------- 243
            N +  D I                                LG                 
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             T +I +Y+KCG     R +FD++ Q ++IS++AMI+ Y ++ + + A+ LF  +L+S 
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 302 VLPNRITFVSLL---YACSHTGLVEEGLRLFSSMWDDFAV--RPDVKHYTCMVDLLGRAG 356
              N  T V L+      +H  L     RL  ++     +  +P V   T +  +  R  
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLS----RLIQNLSLKIGIILQPSVS--TALTTVYCRLN 364

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
            +  A +L +  S EK    W A++     +   D A    + ++ +   NP
Sbjct: 365 EVQFARQLFDE-SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNP 415



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 157/374 (41%), Gaps = 40/374 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA  +  G  +NL V + ++ +Y        A  +F+ M ERD+V W+ M+ GFS+ + 
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F +    F + +  G+  DS TL  V+ A  + ++  +G  I  +  K GL  D +V   
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTG 254

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           L+ +Y+KC      R LFDQ+   DL+++  MI    F             +    ++  
Sbjct: 255 LISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTF------------NHETESAVTL 302

Query: 259 AREIFDRMRQKNVISWSAMIAAY--GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
            RE+    ++ N  +   +I  Y    H Q  + +    + +   + P+  T ++ +Y  
Sbjct: 303 FRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYC- 361

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDE 374
                V+   +LF     D +    +  +  M+    + G  D A+ L + M   +  + 
Sbjct: 362 -RLNEVQFARQLF-----DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNP 415

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSL---------LERQPQNPGHYVLLSNVYANAGRWQ 425
               ++L AC        A++ A S+          ER   N      L ++YA  G   
Sbjct: 416 VTVTSILSAC--------AQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIV 467

Query: 426 DVAKIRDLMTRRRL 439
           +  ++ DLM  + +
Sbjct: 468 EARQLFDLMVDKNV 481



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 34  GHEQNPMNPR---VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGG 87
           G+ QN +  R   +  +M P      S +P    S L +C  +  +   + VH  I +  
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQL----SPNPVTVTSILSACAQLGALSIGKWVHGLIKSER 445

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
             +N+ V+  L+ +YA   ++ +A  LF+ M +++ V+W+ M+ G+          + F 
Sbjct: 446 LESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFY 505

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           E ++ G+     T   ++ AC     +  G  + H +    G        A +VD+  + 
Sbjct: 506 EMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRA 565

Query: 207 KVIDDARQLFDQMPTR-DLVTWTVMIGA 233
             + +A +  ++MP       W  ++GA
Sbjct: 566 GQLTNALEFIERMPLEPGPAVWGALLGA 593


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/555 (41%), Positives = 322/555 (58%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VH QI   G  +++ V N L+ +YA    +  A  +F G+ +R+ VSW+ M+ G+ + 
Sbjct: 189 KRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQN 248

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +     F +  +  ++ D   L  V+RA  D +D+  G+ IH  V+K GL+ +  + 
Sbjct: 249 GLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLL 308

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV--------------------MIGAN-- 234
            +L  MYAKC  +  AR  FDQM   +++ W                      MI  N  
Sbjct: 309 ISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIR 368

Query: 235 --------------------------------KFLLDVILGTAVIDMYAKCGSIDSAREI 262
                                           ++  DV + TA+IDM+AKCGS+D ARE+
Sbjct: 369 TDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREV 428

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDR   K+V+ WSAMI  YG HG+G+ A+DLF  M  + V PN +TFV LL AC+H+GLV
Sbjct: 429 FDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLV 488

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG  LF SM   + +    +HY C+VDLLGR+G L+EA   I +M +E    +WGALLG
Sbjct: 489 EEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLG 547

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC+I+++V L E AA+ L    P N GHYV LSN+YA++  W  VAK+R LM  + L K 
Sbjct: 548 ACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKD 607

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G++ IE+  K+  F VGD +HP+ +EI+  L +L  +L+ AG+IP     LHD+++E K
Sbjct: 608 LGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEK 667

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L +HSE+LAIA+GLI+T  GT +RI KNLR C +CHS  K +S +  R I+VRDANR
Sbjct: 668 EETLCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANR 727

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSCRDYW
Sbjct: 728 FHHFKNGVCSCRDYW 742



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 168/380 (44%), Gaps = 56/380 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           FF S L    +   + Q+HAQ+V  G + +  +  K +        +  A  +F+   E 
Sbjct: 73  FFSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEP 132

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
               W+ ++ G+S    F +  E +      G+  D +TLP V++AC     + +G+ +H
Sbjct: 133 SVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVH 192

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFLL 238
             + + G + D FV   LV +YAKC  ++ AR +F+ +  R++V+WT MI   G N   +
Sbjct: 193 GQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPM 252

Query: 239 DVI---------------------------------------------------LGTAVI 247
           + +                                                   L  ++ 
Sbjct: 253 EALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLT 312

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            MYAKCG +  AR  FD+M   NV+ W+AMI+ Y  +G   +A+ LF  M+S  +  + I
Sbjct: 313 AMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSI 372

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           T  S + AC+  G ++   +      +    R DV   T ++D+  + G +D A ++ + 
Sbjct: 373 TVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431

Query: 368 MSVEKDEGLWGALLGACRIH 387
            +++KD  +W A++    +H
Sbjct: 432 -TLDKDVVVWSAMIVGYGLH 450


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/545 (40%), Positives = 319/545 (58%), Gaps = 54/545 (9%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G  +++ V   L+ +Y+          LF+ + + D +S++ M+ G++   +  +    F
Sbjct: 244 GLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           RE +  G +++S TL  +I        + + RLI ++ LK G+ +   V  AL  +Y + 
Sbjct: 304 RELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRL 363

Query: 207 KVIDDARQLFDQMPTRDLVTWTVM------------------------------------ 230
             +  ARQLFD+ P + L +W  M                                    
Sbjct: 364 NEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILS 423

Query: 231 -----------------IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                            I + +   +V + TA++DMYAKCGSI  AR++FD M  KNV++
Sbjct: 424 ACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVT 483

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI  YG HG GK+AL LF  ML S + P  +TF+S+LYACSH+GLV EG  +F SM 
Sbjct: 484 WNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMA 543

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +++  +P  +HY CMVD+LGRAG+L  AL+ IE M +E    +WGALLGAC IHKN ++A
Sbjct: 544 NNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMA 603

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
            +A+K L +  P+N G+YVLLSN+Y+    +   A +R ++ +R+L K PG T IE++++
Sbjct: 604 NVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQ 663

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT-NFELHDVDEEVKVGNLYSHSEK 512
            + F+ GD +HPQ+  I+ ML  L+ K+  AGY  +T    LHDV++E K   +  HSEK
Sbjct: 664 QYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEK 723

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LAIAFGLI+T  GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRFHHF+ G CS
Sbjct: 724 LAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICS 783

Query: 573 CRDYW 577
           C DYW
Sbjct: 784 CGDYW 788



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 178/412 (43%), Gaps = 75/412 (18%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +FF++ L +   + Q+ Q+ AQ++  G   +L    KL + +    A+     LFN + +
Sbjct: 15  RFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSK 74

Query: 121 RDSVSWSVMVGGFS-----KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
            D   ++V++ GFS     K + F+  +   R+  +  ++ D++T  F I A    +D  
Sbjct: 75  PDLFLFNVLIRGFSDNGLPKSSIFL--YTHLRK--KTNLRPDNFTYAFAISAASRLEDER 130

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           +G L+H   +  G+  + FV +A+VD+Y K    + AR++FD MP RD V W  MI    
Sbjct: 131 VGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFS 190

Query: 234 -NKFLLDVI--------------------------------LG----------------- 243
            N +  D I                                LG                 
Sbjct: 191 RNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVY 250

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             T +I +Y+KCG     R +FD++ Q ++IS++AMI+ Y ++ + + A+ LF  +L+S 
Sbjct: 251 VLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG 310

Query: 302 VLPNRITFVSLL---YACSHTGLVEEGLRLFSSMWDDFAV--RPDVKHYTCMVDLLGRAG 356
              N  T V L+      +H  L     RL  ++     +  +P V   T +  +  R  
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLS----RLIQNLSLKIGIILQPSVS--TALTTVYCRLN 364

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
            +  A +L +  S EK    W A++     +   D A    + ++ +   NP
Sbjct: 365 EVQFARQLFDE-SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNP 415



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 89/205 (43%), Gaps = 6/205 (2%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT 90
           G+ QN +  R  + +  +     S +P    S L +C  +  +   + VH  I +    +
Sbjct: 390 GYTQNGLTDRA-ISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLES 448

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+ V+  L+ +YA   ++ +A  LF+ M +++ V+W+ M+ G+          + F E +
Sbjct: 449 NVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEML 508

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           + G+     T   ++ AC     +  G  + H +    G        A +VD+  +   +
Sbjct: 509 QSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQL 568

Query: 210 DDARQLFDQMPTR-DLVTWTVMIGA 233
            +A +  ++MP       W  ++GA
Sbjct: 569 TNALEFIERMPLEPGPAVWGALLGA 593


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/585 (37%), Positives = 335/585 (57%), Gaps = 59/585 (10%)

Query: 49  GPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           G D  F    D    ++  L  R I + ++VHA ++    L  + +  +L+  Y    +L
Sbjct: 53  GLDTNFQ---DYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSL 109

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            DA  +F+ M ER+ VSW+ M+  +S+          F + +R G + + +T   V+ +C
Sbjct: 110 RDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSC 169

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
                 V+GR IH  ++K   +   +V ++L+DMYAK   I +AR +F  +P RD+V+ T
Sbjct: 170 IGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCT 229

Query: 229 VMI-GANKFLLD------------------------------------------------ 239
            +I G  +  LD                                                
Sbjct: 230 AIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRS 289

Query: 240 -----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                V+L  ++IDMY+KCG++  AR IFD + ++ VISW+AM+  Y  HG+G++ L+LF
Sbjct: 290 EVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELF 349

Query: 295 PMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLL 352
            +M+  ++V P+ +T +++L  CSH GL ++G+ +F  M     +V+PD KHY C+VD+L
Sbjct: 350 NLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDML 409

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAGR++ A + ++ M  E    +WG LLGAC +H N+D+ E     LL+ +P+N G+YV
Sbjct: 410 GRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYV 469

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           +LSN+YA+AGRW+DV  +R+LM ++ + K PG +WIE++  +H F   D +HP+ EE+  
Sbjct: 470 ILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSA 529

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  LS + + AGY+PD +  LHDVDEE K   L SHSEKLA+ FGLIATPE   IR++K
Sbjct: 530 KVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIK 589

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLR+C DCH+F K+ S I  R + +RD NRFH   GG CSC DYW
Sbjct: 590 NLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 338/579 (58%), Gaps = 59/579 (10%)

Query: 58   VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            V+ + + S L  C +   IR+   VHA ++       + +  +L+ +Y   + L DA  +
Sbjct: 475  VEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRV 534

Query: 115  FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
             + M ER+ VSW+ M+ G+S+          F E +  G   + +T   V+ +C      
Sbjct: 535  LDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGF 594

Query: 175  VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             +GR IH +V+K+  +   FV ++L+DMYAK   I +AR++FD +P RD+V+ T +I   
Sbjct: 595  QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 654

Query: 232  ---GANKFLLD------------------------------------------------V 240
               G ++  LD                                                V
Sbjct: 655  AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 714

Query: 241  ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS- 299
            +L  ++IDMY+KCGS+  +R IFD M ++ VISW+AM+  Y  HG G++A++LF +M   
Sbjct: 715  VLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEE 774

Query: 300  SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRPDVKHYTCMVDLLGRAGRL 358
            ++V P+ +TF+++L  CSH G+ + GL +F  M +      P+++HY C+VDL GRAGR+
Sbjct: 775  NKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRV 834

Query: 359  DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
            +EA + I+ M  E    +WG+LLGACR+H+NV + E  A+ LLE + +N G+YV+LSN+Y
Sbjct: 835  EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 894

Query: 419  ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
            A+AGRW DV  +R+LM  + + K PG +WIE++  +H F   D +HP+ EE++  +  LS
Sbjct: 895  ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 954

Query: 479  EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
             K++ AGY+P+ +  L+DVD+E K   L  HSEKLA+AFGLI TP GT +RI+KNLR+C 
Sbjct: 955  IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 1014

Query: 539  DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCH+F K +S +  R + +RD NRFHH  GG CSC DYW
Sbjct: 1015 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 64/287 (22%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++++      V+  C  +  I  G+ +H  ++K+  +   ++   L+ +Y KC+ + DA
Sbjct: 472 GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 531

Query: 213 RQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL------ 242
           R++ D+MP R++V+WT MI                          N+F    +L      
Sbjct: 532 RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 591

Query: 243 ------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                                   G++++DMYAK G I  AR +FD + +++V+S +A+I
Sbjct: 592 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 651

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           + Y   G  ++ALDLF  +    +  N +T+ S+L A S    ++ G ++ S +     +
Sbjct: 652 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV-----L 706

Query: 339 RPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           R  +  Y      ++D+  + G L  + ++ +SM  E+    W A+L
Sbjct: 707 RAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAML 752


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/534 (42%), Positives = 311/534 (58%), Gaps = 55/534 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N L+ +Y     L DA  +F+ M +R+ VSW+ M+  +S         E     +R G++
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            + +T   V+RAC    ++   R +H  ++K GLD D FV +AL+D+Y++   +++A ++
Sbjct: 64  PNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 216 FDQMPTRDLVTWT----------------------------------------------- 228
           FD+M T DLV W+                                               
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 229 -----VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                V +   K+  D+IL  A++DMY KCGS++ A  +F RM +K+VISWS MIA    
Sbjct: 181 ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           +G  K+AL LF  M    + PN +T V +L+ACSH GLVEEGL  F SM + F + P  +
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           HY CM+DLLGRAGRL EA+ LI  M  E D   W ALL ACR+H+NVD+A  AAK +L  
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRL 360

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
            PQ+ G YVLLSN+YAN  RW DVA++R  MT R +KK PG +WIEV  +IH F +GD +
Sbjct: 361 DPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRS 420

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HPQ  EI   L  L  KL   GY+PDTNF L D++ E    +L  HSEKLAI FGL++ P
Sbjct: 421 HPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLP 480

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            G  IRI KNLR+CGDCH F K ++ + +R+I++RD  R+HHF+ G CSC D+W
Sbjct: 481 RGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 139/325 (42%), Gaps = 84/325 (25%)

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN----------KFLL----- 238
           F+   L++MY K  ++ DA+ +FD+MP R++V+WT MI A           +FL+     
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 239 ------------------------------------DVILGTAVIDMYAKCGSIDSAREI 262
                                               DV + +A+ID+Y++ G +++A  +
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M   +++ WS++IA +  +  G +AL LF  M  +  L  + T  S+L AC+   L+
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 323 EEG-------------LRLFSSMWDDFA---------------VRPDVKHYTCMVDLLGR 354
           E G             L L +++ D +                V  DV  ++ M+  L +
Sbjct: 181 ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLG---ACRIHKNVDLAEMAAKSLLERQPQNPG-- 409
            G   EALKL ESM V   +  +  ++G   AC     V+       S+ E    +PG  
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLM 434
           HY  + ++   AGR  +   + + M
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEM 325


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 330/554 (59%), Gaps = 55/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           + HA  +  G    + VA  +L  Y     +  A  +F+ M  ++SVSW+ M+ G+++  
Sbjct: 182 EAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNG 241

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D       F   +  G+ +   ++   ++AC +   +  G  +H+++++ GLD +  V  
Sbjct: 242 DSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMN 301

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IGA 233
           AL+ MY+KCK +D A  +FD++  R  V+W  M                        +  
Sbjct: 302 ALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKP 361

Query: 234 NKFLL------------------------------DVILGTAVIDMYAKCGSIDSAREIF 263
           + F L                              DV + TA+IDMYAKCG ++ AR +F
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           +  R+++VI+W+AMI  YG HG GK A++LF  M S  ++PN  TF+S+L ACSH GLV+
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVD 481

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG   F+SM +D+ + P ++HY  MVDLLGRAG+LDEA   I+ M ++    ++GA+LGA
Sbjct: 482 EGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGA 541

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C++HKNV+LAE +A+ + E  PQ   ++VLL+N+YANA  W+DVA++R  M +  L+K P
Sbjct: 542 CKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTP 601

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           GW+ I+++N+IH F  G + H Q++EIY  L  L E+++  GY+PDT+  +HDV+++VK 
Sbjct: 602 GWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTD-SIHDVEDDVKA 660

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L +HSEKLAIAFGLI T  GT I+I KNLRVC DCH+  K +S +T R II+RD  RF
Sbjct: 661 QLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRF 720

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 721 HHFKDGKCSCGDYW 734



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 156/364 (42%), Gaps = 65/364 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VHAQ+ A G  +  + A  L  +YA  +   DA  +F+ M  RD V+W+ +V G+++ 
Sbjct: 79  RAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARN 138

Query: 137 ADFINCFE-TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                  E   R     G + DS TL  V+ AC + + +   R  H   ++SGL+    V
Sbjct: 139 GLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNV 198

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
             A++D Y KC  I  AR +FD MPT++ V+W  MI                        
Sbjct: 199 ATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258

Query: 234 --------------------------NKFLLDVILGTAVIDMYA------KCGSIDSARE 261
                                     ++ L+ + L + V  M A      KC  +D A  
Sbjct: 259 DVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD + ++  +SW+AMI     +G  + A+ LF  M    V P+  T VS++ A     L
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA-----L 373

Query: 322 VEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
            +    L +     +++R     DV   T ++D+  + GR++ A  L  S + E+    W
Sbjct: 374 ADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS-ARERHVITW 432

Query: 378 GALL 381
            A++
Sbjct: 433 NAMI 436



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 131/326 (40%), Gaps = 70/326 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +++ C  R D+  GR +H  +   G+D +     AL +MYAKC+   DAR++FD+M
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRM 120

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN--------- 270
           P RD V W  ++                  YA+ G    A E+  RM+++          
Sbjct: 121 PVRDRVAWNALVAG----------------YARNGLARMAMEMVVRMQEEEGERPDSITL 164

Query: 271 -------------------------------VISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                                          V   +A++ AY   G  + A  +F  M +
Sbjct: 165 VSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPT 224

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
                N +++ +++   +  G   E L LF+ M ++     DV     +    G  G LD
Sbjct: 225 K----NSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL-QACGELGCLD 279

Query: 360 EALK---LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           E ++   L+  + ++ +  +  AL+      K VDLA       L+R+ Q   + ++L  
Sbjct: 280 EGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDE-LDRRTQVSWNAMILG- 337

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKI 442
             A  G  +D  +   L TR +L+ +
Sbjct: 338 -CAQNGCSEDAVR---LFTRMQLENV 359


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/553 (40%), Positives = 330/553 (59%), Gaps = 55/553 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  ++  G  + + V+  L+ +Y+   +++ A  +F+GM  R  VSW+ M+ G+ +  D
Sbjct: 153 VHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGD 212

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                  F++ +  G+Q  + T+   + AC D  D+  G+ +H +V +  LD D  V  +
Sbjct: 213 AEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNS 272

Query: 199 LVDMYAKCKVIDDARQLFD-------------------------------QMPTRDL--- 224
           L+ MY+KCK +D A  +F                                +M +R++   
Sbjct: 273 LISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPD 332

Query: 225 -------------------VTWTVMIGANKFL-LDVILGTAVIDMYAKCGSIDSAREIFD 264
                                W   +   +FL  +V + TA++DMYAKCG+I +AR++FD
Sbjct: 333 SFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFD 392

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            M  ++VI+W+AMI  YG HG GK +++LF  M    + PN ITF+  L ACSH+GLVEE
Sbjct: 393 MMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEE 452

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           GL  F SM  D+ + P + HY  MVDLLGRAGRL++A   I+ M ++    ++GA+LGAC
Sbjct: 453 GLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGAC 512

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           +IHKNVDL E AA  + +  P + G++VLL+N+YA A  W  VAK+R +M +  L+K PG
Sbjct: 513 KIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPG 572

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            + +E+ N++H F  G ++HPQS++IY  L TL +++  AGY+PDTN  +HDV+++VKV 
Sbjct: 573 CSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTN-SIHDVEDDVKVQ 631

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L +HSEKLAIAFGL+ T  GT I I KNLRVCGDCH+  K++S +T R IIVRD +RFH
Sbjct: 632 LLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFH 691

Query: 565 HFEGGACSCRDYW 577
            F+ G CSC DYW
Sbjct: 692 LFKDGVCSCGDYW 704



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 160/376 (42%), Gaps = 73/376 (19%)

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+ G++K +   +    F       ++   Y   ++++ C D  D+  G+ IH  V+ SG
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVIL 242
              + F    +V+MYAKC+ I+DA  +FD+MP RDLV W  MI      G  K  L ++L
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 243 ------------------------------------------------GTAVIDMYAKCG 254
                                                            TA++DMY+KCG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           S+  AR IFD M  + V+SW++MI  Y   G  + A+ +F  ML   V P  +T +  L+
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC+  G +E G +    + D   +  DV     ++ +  +  R+D A  + +++   K  
Sbjct: 241 ACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR-NKTL 298

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNVYANA-------GRWQ 425
             W A++     +        A  +  E Q +N  P  + ++S + A A        +W 
Sbjct: 299 VSWNAMILG---YAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKW- 354

Query: 426 DVAKIRDLMTRRRLKK 441
               I  L+ RR L K
Sbjct: 355 ----IHGLVIRRFLDK 366



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 7/196 (3%)

Query: 55  TRSVDPKFF-----ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           +R++ P  F     I +L       Q + +H  ++      N+ V   L+ +YA   A+ 
Sbjct: 326 SRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIH 385

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  LF+ M  R  ++W+ M+ G+          E F+E  +  ++ +  T    + AC 
Sbjct: 386 TARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACS 445

Query: 170 DRKDIVMGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-W 227
               +  G    + + K  G++       A+VD+  +   ++ A     +MP +  +T +
Sbjct: 446 HSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVY 505

Query: 228 TVMIGANKFLLDVILG 243
             M+GA K   +V LG
Sbjct: 506 GAMLGACKIHKNVDLG 521


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/555 (41%), Positives = 322/555 (58%), Gaps = 63/555 (11%)

Query: 86  GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFET 145
           GG        N L+ +YA    + D+ ALF    +RD VSW+ M+  FS+   F      
Sbjct: 142 GGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAF 201

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDM-- 202
           FR  +  G++LD  T+  V+ AC   + + +G+ IH  VL++  L  + FV +ALVDM  
Sbjct: 202 FRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYC 261

Query: 203 -----------------------------YAKCKVIDDARQLFDQM-PTRDLVTWTVMIG 232
                                        YA+  + + A  LF +M     L+  T  + 
Sbjct: 262 NCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMA 321

Query: 233 A------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           +                        N    D+ +G+A++DMYAKCG ++ +R +F+ M  
Sbjct: 322 SVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 381

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLS-----SRVLPNRITFVSLLYACSHTGLVE 323
           KNVI+W+ +I A G HG+G++AL+LF  M++         PN +TF+++  ACSH+GL+ 
Sbjct: 382 KNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLIS 441

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE-GLWGALLG 382
           EGL LF  M  D  V P   HY C+VDLLGRAG+L+EA +L+ +M  E D+ G W +LLG
Sbjct: 442 EGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG 501

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH+NV+L E+AAK+LL  +P    HYVLLSN+Y++AG W    ++R  M +  +KK 
Sbjct: 502 ACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKE 561

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIE  +++H+F  GD +HPQSE+++  L TLSEK+   GY+PDT+  LH+VDE+ K
Sbjct: 562 PGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEK 621

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSEKLAIAFG++ TP GT IR+ KNLRVC DCH+  K +S I  R IIVRD  R
Sbjct: 622 ENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRR 681

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 682 FHHFKEGTCSCGDYW 696



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 137/349 (39%), Gaps = 88/349 (25%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R + SW   +   ++  DF     T+ E    G + D++  P V++A    +D+  G  I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 181 HDIVLKSGLDIDQFVCA-ALVDMYAKCKVI--------------------DDARQLFDQM 219
           H   +K G        A  LV+MY KC  I                    DD++ LF+  
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESF 174

Query: 220 PTRDLVTWTVMIG----------ANKFLLDVIL------GTAVIDMYAKCGSID------ 257
             RD+V+W  MI           A  F   ++L      G  +  +   C  ++      
Sbjct: 175 VDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGK 234

Query: 258 ---------------------------------SAREIFDRMRQKNVISWSAMIAAYGYH 284
                                            S R +FD +  + +  W+AMI+ Y  +
Sbjct: 235 EIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARN 294

Query: 285 GQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHT-GLVEEGLRLFSSMWDDFAVR--- 339
           G  +KAL LF  M+  + +LPN  T  S++ AC H+   + +G  + +     +A+R   
Sbjct: 295 GLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHA-----YAIRNML 349

Query: 340 -PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             D+   + +VD+  + G L+ + ++   M   K+   W  L+ AC +H
Sbjct: 350 ASDITVGSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMH 397



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 34/229 (14%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           I + +++HA  +     +++ V + L+ +YA    L  +  +FN M  ++ ++W+V++  
Sbjct: 334 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 393

Query: 133 FSKVADFINCFETFREFI----RCG-MQLDSYTLPFVIRACRDRKDIVMG-----RLIHD 182
                      E F+  +    R G  + +  T   V  AC     I  G     R+ HD
Sbjct: 394 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 453

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--DLVTWTVMIGANKFLLDV 240
             ++     D + C  +VD+  +   +++A +L + MP     +  W+ ++GA +   +V
Sbjct: 454 HGVEP--TSDHYAC--VVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNV 509

Query: 241 ILGTAVI------------------DMYAKCGSIDSAREIFDRMRQKNV 271
            LG                      ++Y+  G  + A E+   MRQ  V
Sbjct: 510 ELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGV 558


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/578 (39%), Positives = 331/578 (57%), Gaps = 56/578 (9%)

Query: 56  RSVDP-KFFISSLL-SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           + +DP +F   SL  SC  + + +Q+H      G  ++  + N L+ +Y+    L  A  
Sbjct: 134 QGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARK 193

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M  +  VSW+ M+G +++        + FR      ++ +  TL  V+ AC   +D
Sbjct: 194 VFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRD 253

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----------- 222
           +   + +H  + ++G+     + +AL+D+Y KC     AR LF++MP +           
Sbjct: 254 LETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMING 313

Query: 223 ------------------------------------------DLVTWT-VMIGANKFLLD 239
                                                     +L  W  V I   K  +D
Sbjct: 314 HVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVD 373

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V LGTA++DMYAKCGSI+SA  +F  M +K+V++W+A+I      GQG KAL+LF  M  
Sbjct: 374 VALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQM 433

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           S V P+ ITFV +L ACSH GLV EG+  F+SM + + ++P ++HY CMVD+LGRAGR+ 
Sbjct: 434 SEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIA 493

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA  LI++M +  D  +   LL ACRIH N+ +AE AA+ L+E  P+N G YVLLSN+Y+
Sbjct: 494 EAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYS 553

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
           +   W+   K+R+LM  R +KK PG + IEV   +H+F  GD +HPQS EIY  L  +  
Sbjct: 554 SMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMR 613

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           +L+ AGY+PD +  L D+DE+ K   L  HSEKLAIAFGL++T  GT IR++KNLRVC D
Sbjct: 614 RLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSD 673

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CHS +K +S +  R IIVRD NRFHHF  G+CSCRD+W
Sbjct: 674 CHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 144/320 (45%), Gaps = 54/320 (16%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDS 123
           SL  C  + Q++Q+HAQ++      +   A+K++   ALH +  L  A  +FN +    +
Sbjct: 46  SLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTT 105

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
            + + ++ G++                       +  LP        R+ I    L + +
Sbjct: 106 FTCNSIIRGYT-----------------------NKNLP--------RQAI----LFYQL 130

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++  GLD D+F   +L   +  C V+ + +QL            +  +G   F  D  + 
Sbjct: 131 MMLQGLDPDRFTFPSL---FKSCGVLCEGKQLH---------CHSTKLG---FASDAYIQ 175

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
             +++MY+ CG + SAR++FD+M  K+V+SW+ MI AY       +A+ LF  M  + V 
Sbjct: 176 NTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVK 235

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN IT V++L AC+ +  +E   ++   + D+  +       + ++D+  + G    A  
Sbjct: 236 PNEITLVNVLTACARSRDLETAKQVHKYI-DETGIGFHTVLTSALMDVYCKCGCYPLARD 294

Query: 364 LIESMSVEKDEGLWGALLGA 383
           L   M  EK+   W  ++  
Sbjct: 295 LFNKMP-EKNLFCWNIMING 313



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 17/190 (8%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           GS+  AR +F+++      + +++I  Y      ++A+  + +M+   + P+R TF SL 
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            +C   G++ EG +L            D      ++++    G L  A K+ + M V K 
Sbjct: 148 KSC---GVLCEGKQLHCHS-TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKS 202

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
              W  ++GA   +   DL   A K    +E     P    L++ + A        A+ R
Sbjct: 203 VVSWATMIGA---YAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTA-------CARSR 252

Query: 432 DLMTRRRLKK 441
           DL T +++ K
Sbjct: 253 DLETAKQVHK 262


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/581 (40%), Positives = 334/581 (57%), Gaps = 66/581 (11%)

Query: 63   FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            F  ++ SC  +  +   R  H Q    G  T+L V++ L+ +Y+    L DA ALF+ + 
Sbjct: 1145 FPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 1204

Query: 120  ERDSVSWSVMVGGFSKVADFINCFETFREFIR--------CGMQLDSYTLPFVIRACRDR 171
             R+ VSW+ M+ G+ +     N    F++F+           + LDS  +  V+ AC   
Sbjct: 1205 LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 1264

Query: 172  KDIVMGRLIHDIVLKSGLDIDQFVCAALVD------------------------------ 201
                +   +H  V+K G D    V   L+D                              
Sbjct: 1265 SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMI 1324

Query: 202  -MYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------IGANKFLLD------- 239
             +YA+  +  +A ++F  M     V +  +              + A K + D       
Sbjct: 1325 AVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDL 1384

Query: 240  ---VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
               V +GT++IDMY KCG ++ A++ FDRM++KNV SW+AM+A YG HG+ K+ALD+F  
Sbjct: 1385 EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYK 1444

Query: 297  MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
            M+ + V PN ITFVS+L ACSH GLVEEG   F++M   + + P ++HY CMVDL GRAG
Sbjct: 1445 MVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAG 1504

Query: 357  RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
             L+EA  LI+ M ++ D  +WG+LLGACRIHKNVDL E+AA+ L E  P N G+YVLLSN
Sbjct: 1505 CLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSN 1564

Query: 417  VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
            +YA+AGRW DV ++R LM  R+L K PG++ +E++ ++H F VGD  HP  E IY+ L  
Sbjct: 1565 LYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEK 1624

Query: 477  LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
            L+ +L+  GY+P+    LHDVDEE K   L  HSEKLA+AFG++ +  GT I I+KNLRV
Sbjct: 1625 LTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRV 1684

Query: 537  CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            CGDCH+ IK +S +  R  +VRD+ RFHHF+ G CSC DYW
Sbjct: 1685 CGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 175/330 (53%), Gaps = 36/330 (10%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L +C+N   +RQ+HA+I+  G   + ++  KL+++Y+ H  +  A  LF  ++   + +W
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTW 93

Query: 127 SVMV-----GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           ++++      G S+ A  +     ++  +  G+  D +T PFVI+AC +   I +G+++H
Sbjct: 94  NLIIRANTINGLSEQALML-----YKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
             ++K G   D FV   L+D Y KC     A ++F++M  R++V+WT             
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTT------------ 196

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
               VI     CG +  AR IFD +  KNV+SW+AMI  Y  + Q ++AL+LF  M +  
Sbjct: 197 ----VISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHY--TCMVDLLGRAGR 357
           + PN  T VSL+ AC+  G++  G  +      D+A++   ++  Y  T ++D+  + G 
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIH 387
           + +A+++ E+M   K    W +++ +  +H
Sbjct: 308 IKDAIEVFETMP-RKSLPTWNSMITSLGVH 336



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 142/330 (43%), Gaps = 73/330 (22%)

Query: 125  SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            SW+ ++   ++  D +     F    + G+     + P  I++C    D+V GR+ H   
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168

Query: 185  LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------ 232
               G + D FV +AL+DMY+KC  + DAR LFD++P R++V+WT MI             
Sbjct: 1169 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 1228

Query: 233  ---------------ANKFLLDVILGTAVIDMYAKC-------------------GSIDS 258
                            N   LD ++  +V+   ++                    GSI  
Sbjct: 1229 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 1288

Query: 259  AREIFDR----------------MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-R 301
               + D                 M +K+ ISW++MIA Y   G   +AL++F  M+    
Sbjct: 1289 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG 1348

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGR 357
            V  N +T  ++L AC+H G +  G  +      D  ++ D+++  C    ++D+  + GR
Sbjct: 1349 VRYNAVTLSAVLLACAHAGALRAGKCI-----HDQVIKMDLEYNVCVGTSIIDMYCKCGR 1403

Query: 358  LDEALKLIESMSVEKDEGLWGALLGACRIH 387
            ++ A K  + M  EK+   W A++    +H
Sbjct: 1404 VEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 1432



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 75/164 (45%), Gaps = 3/164 (1%)

Query: 255  SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            S + A   +  + + NV SW+++IA     G   +AL  F  +    ++P R +F   + 
Sbjct: 1091 SSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIK 1150

Query: 315  ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            +CS    +  G R+       F    D+   + ++D+  + G+L +A  L + + + ++ 
Sbjct: 1151 SCSALCDLVSG-RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPL-RNV 1208

Query: 375  GLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNV 417
              W +++     ++  D A +  K  LE + +   G+ V L +V
Sbjct: 1209 VSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 337/591 (57%), Gaps = 94/591 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+VHA   A   +  + ++N+LL +YA   +L DA  LF+ M  RD  SW+ M+ G++K+
Sbjct: 107 RRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKL 166

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVI--------------------RACRDRKD--- 173
                  + F E      Q D+++    I                    R  R   +   
Sbjct: 167 GRLEQARKLFDEM----PQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFT 222

Query: 174 -------------IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
                        + +G+ IH  ++++ L++D+ V +AL+D+Y KC  +D+AR +FDQM 
Sbjct: 223 LSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMK 282

Query: 221 TRDLVTWTVM------------------------IGANKFLLDVILG------------- 243
            RD+V+WT M                        +  N++    +L              
Sbjct: 283 DRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKE 342

Query: 244 -----------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                            +A++ MY+KCG+   AR +F+ M Q +++SW+++I  Y  +GQ
Sbjct: 343 VHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQ 402

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
             +AL  F ++L S   P+++T+V +L AC+H GLV++GL  F S+ +   +     HY 
Sbjct: 403 PDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYA 462

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           C++DLL R+GR  EA  +I++M V+ D+ LW +LLG CRIH N++LA+ AAK+L E +P+
Sbjct: 463 CVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPE 522

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           NP  Y+ L+N+YANAG W +VA +R  M    + K PG +WIE++ ++H F VGD++HP+
Sbjct: 523 NPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPK 582

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
           + +I+  L  LS+K++  GY+PDTNF LHDV+EE K  NL  HSEKLA+ FG+I+TP GT
Sbjct: 583 TSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGT 642

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            I++ KNLR C DCH+ IK++S I +R I VRD+NRFH FE G+CSC+DYW
Sbjct: 643 PIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 29/227 (12%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +I AC   + + +GR +H     S      F+   L+DMYAKC  + DA+ LFD+M  RD
Sbjct: 93  LIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRD 152

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           L +W  MI                  YAK G ++ AR++FD M Q++  SW+A I+ Y  
Sbjct: 153 LCSWNTMIVG----------------YAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVT 196

Query: 284 HGQGKKALDLFPMMLS-SRVLPNRITFVSLLY-----ACSHTGLVEEGLRLFSSMWDDFA 337
           H Q ++AL+LF +M    R   N+ T  S L       C   G    G  + + +  D  
Sbjct: 197 HNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEV 256

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           V      ++ ++DL G+ G LDEA  + + M  ++D   W  ++  C
Sbjct: 257 V------WSALLDLYGKCGSLDEARGIFDQMK-DRDVVSWTTMIHRC 296


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/576 (40%), Positives = 328/576 (56%), Gaps = 66/576 (11%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           SSLL   +IF  +Q H Q    G  +++ V++ L+ +Y+    L DA  +F+ + +R+ V
Sbjct: 87  SSLL---DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIV 143

Query: 125 SWSVMVGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKDIVMGR 178
           SW+ M+ G+    + ++    F++ +         M LDS  +  VI AC       +  
Sbjct: 144 SWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTE 203

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKC---------KVID------------------- 210
            IH  V+K G D    V   L+D YAK          K+ D                   
Sbjct: 204 SIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQ 263

Query: 211 -----DARQLFDQMPTRDLVTWTVMIGANKFLL------------------------DVI 241
                +A  +F ++    +VT+  +  +   L                         DVI
Sbjct: 264 SGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVI 323

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +GT++IDMY KCG +++AR  FDRM+ KNV SW+AMIA YG HG   KAL+LFP M+ S 
Sbjct: 324 VGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSG 383

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN ITFVS+L ACSH GL + G   F++M   F V P ++HY CMVDLLGRAG L +A
Sbjct: 384 VRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             LI+ M +E D  +W +LL ACRIHKNV+LAE++   L E  P N G+Y+LLS++YA++
Sbjct: 444 YDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADS 503

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GRW+DV ++R  M  R L K PG++ +E+  ++H F +GD  HPQ E+IY  L  L+ KL
Sbjct: 504 GRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKL 563

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
             AGY+ +T+   HDVDEE K   L  HSEKLAIAFG++ T  G+ + ++KNLRVC DCH
Sbjct: 564 LEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCH 623

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + IK +S I  R  +VRDA RFHHF+ G CSC DYW
Sbjct: 624 NVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 1/179 (0%)

Query: 105 HKALTDAHALFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
           H    +   LFN   ++ D  SW+ ++   ++  D       F    +  +     + P 
Sbjct: 22  HTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPC 81

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
            I+AC    DI  G+  H      G   D FV +AL+ MY+ C  ++DAR++FD++P R+
Sbjct: 82  AIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN 141

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
           +V+WT MI       + +   ++        + D A    D M   +VIS  + +AA G
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKG 200


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 331/586 (56%), Gaps = 57/586 (9%)

Query: 47  QMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           Q+ P  Q    V    F  S  SC ++     +HA+++     ++  + ++L+ +Y    
Sbjct: 54  QLSPPFQVYSIVQSLVFAIS--SCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLG 111

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVI 165
              DA  LF+ M  +D VSW+ ++ G S       C   F R     G Q +  TL  V+
Sbjct: 112 YDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVV 171

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--- 222
            AC D   +  G+ +H +V+K G+     V  +L++MY K   +D A QLF++MP R   
Sbjct: 172 SACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLV 231

Query: 223 -------------------DLVTWTVMIGANK---------------------------- 235
                              DL       G N                             
Sbjct: 232 SWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYI 291

Query: 236 ----FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
               F  D+I+ TA++++YAK G ++++ +IF+ ++ ++ I+W+AM+A Y  H  G++A+
Sbjct: 292 HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAI 351

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            LF +M+   V  + +TF  LL ACSH+GLVEEG + F  M + + V P + HY+CMVDL
Sbjct: 352 KLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDL 411

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LGR+GRL++A +LI+SM +E   G+WGALLGACR++ NV+L +  A+ LL   P +  +Y
Sbjct: 412 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNY 471

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           ++LSN+Y+ AG W+D +K+R LM  RRL + PG ++IE  NKIH+F VGD  HP+S+EI+
Sbjct: 472 IMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIH 531

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  L  K+  AG  P T F LHD+DEEVKV  +  HSEKLAIAFGL+ T  G  + I 
Sbjct: 532 TKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIIT 591

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+CGDCHS  K  S + +R II+RD+ RFHHF  G CSCRDYW
Sbjct: 592 KNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/581 (40%), Positives = 334/581 (57%), Gaps = 66/581 (11%)

Query: 63   FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            F  ++ SC  +  +   R  H Q    G  T+L V++ L+ +Y+    L DA ALF+ + 
Sbjct: 2018 FPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP 2077

Query: 120  ERDSVSWSVMVGGFSKVADFINCFETFREFIR--------CGMQLDSYTLPFVIRACRDR 171
             R+ VSW+ M+ G+ +     N    F++F+           + LDS  +  V+ AC   
Sbjct: 2078 LRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRV 2137

Query: 172  KDIVMGRLIHDIVLKSGLD-------------------------------IDQFVCAALV 200
                +   +H  V+K G D                                D     +++
Sbjct: 2138 SGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMI 2197

Query: 201  DMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------IGANKFLLD------- 239
             +YA+  +  +A ++F  M     V +  +              + A K + D       
Sbjct: 2198 AVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDL 2257

Query: 240  ---VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
               V +GT++IDMY KCG ++ A++ FDRM++KNV SW+AM+A YG HG+ K+ALD+F  
Sbjct: 2258 EYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYK 2317

Query: 297  MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
            M+ + V PN ITFVS+L ACSH GLVEEG   F++M   + + P ++HY CMVDL GRAG
Sbjct: 2318 MVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAG 2377

Query: 357  RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
             L+EA  LI+ M ++ D  +WG+LLGACRIHKNVDL E+AA+ L E  P N G+YVLLSN
Sbjct: 2378 CLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSN 2437

Query: 417  VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
            +YA+AGRW DV ++R LM  R+L K PG++ +E++ ++H F VGD  HP  E IY+ L  
Sbjct: 2438 LYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEK 2497

Query: 477  LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
            L+ +L+  GY+P+    LHDVDEE K   L  HSEKLA+AFG++ +  GT I I+KNLRV
Sbjct: 2498 LTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRV 2557

Query: 537  CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            CGDCH+ IK +S +  R  +VRD+ RFHHF+ G CSC DYW
Sbjct: 2558 CGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 175/330 (53%), Gaps = 36/330 (10%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L +C+N   +RQ+HA+I+  G   + ++  KL+++Y+ H  +  A  LF  ++   + +W
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTW 93

Query: 127 SVMV-----GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           ++++      G S+ A  +     ++  +  G+  D +T PFVI+AC +   I +G+++H
Sbjct: 94  NLIIRANTINGLSEQALML-----YKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVH 148

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
             ++K G   D FV   L+D Y KC     A ++F++M  R++V+WT             
Sbjct: 149 GSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTT------------ 196

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
               VI     CG +  AR IFD +  KNV+SW+AMI  Y  + Q ++AL+LF  M +  
Sbjct: 197 ----VISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN 252

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHY--TCMVDLLGRAGR 357
           + PN  T VSL+ AC+  G++  G  +      D+A++   ++  Y  T ++D+  + G 
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIH 387
           + +A+++ E+M   K    W +++ +  +H
Sbjct: 308 IKDAIEVFETMP-RKSLPTWNSMITSLGVH 336



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 141/330 (42%), Gaps = 73/330 (22%)

Query: 125  SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            SW+ ++   ++  D +     F    + G+     + P  I++C    D+V GR+ H   
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041

Query: 185  LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------- 231
               G + D FV +AL+DMY+KC  + DAR LFD++P R++V+WT MI             
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101

Query: 232  --------------GANKFLLDVILGTAVIDMYAKC-------------------GSIDS 258
                            N   LD ++  +V+   ++                    GSI  
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 2161

Query: 259  AREIFDR----------------MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-R 301
               + D                 M +K+ ISW++MIA Y   G   +AL++F  M+    
Sbjct: 2162 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG 2221

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGR 357
            V  N +T  ++L AC+H G +  G         D  ++ D+++  C    ++D+  + GR
Sbjct: 2222 VRYNAVTLSAVLLACAHAGALRAG-----KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 2276

Query: 358  LDEALKLIESMSVEKDEGLWGALLGACRIH 387
            ++ A K  + M  EK+   W A++    +H
Sbjct: 2277 VEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 2305



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 3/151 (1%)

Query: 268  QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
            + NV SW+++IA     G   +AL  F  +    ++P R +F   + +CS    +  G R
Sbjct: 1977 KSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSG-R 2035

Query: 328  LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            +       F    D+   + ++D+  + G+L +A  L + + + ++   W +++     +
Sbjct: 2036 MSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPL-RNVVSWTSMITGYVQN 2094

Query: 388  KNVDLAEMAAKSLLERQPQ-NPGHYVLLSNV 417
            +  D A +  K  LE + +   G+ V L +V
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPLDSV 2125


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 328/602 (54%), Gaps = 101/602 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q H   V    + N+ V N L+ +YA    + +A+ +F+ M  +D VSW+ MV G+S++
Sbjct: 249 KQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQI 308

Query: 137 ADFINCFETF-----------------------------------REFIRCGMQLDSYTL 161
             F +    F                                   R+ +  G++ +  TL
Sbjct: 309 GRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDI-------DQFVCAALVDMYAKCKVIDDARQ 214
             V+  C     ++ G+ IH   +K  +D+       +  V   L+DMYAKCK +D AR 
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARA 428

Query: 215 LFDQMPT--RDLVTWTVMIG-------ANKFL---------------------------- 237
           +FD +    RD+VTWTVMIG       ANK L                            
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 238 ----------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                 + + +   +IDMYAKCG I  AR +FD M +KN ++W+
Sbjct: 489 SLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWT 548

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           +++  YG HG G++AL +F  M       + +T + +LYACSH+G++++G+  F+ M  D
Sbjct: 549 SLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTD 608

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F V P  +HY C+VDLLGRAGRL+ AL+LIE M +E    +W ALL  CRIH  V+L E 
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEY 668

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AAK + E    N G Y LLSN+YANAGRW+DV +IR LM  + +KK PG +W+E      
Sbjct: 669 AAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTT 728

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F VGD THP ++EIY++L    ++++  GY+P+T F LHDVD+E K   L+ HSEKLA+
Sbjct: 729 TFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLAL 788

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+G++ TP+G  IRI KNLRVCGDCH+   ++S I    II+RD++RFHHF+ G CSC+ 
Sbjct: 789 AYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKG 848

Query: 576 YW 577
           YW
Sbjct: 849 YW 850



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 41/359 (11%)

Query: 69  SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +C  I  +R     HA     G ++N+ V N L+ +Y+   +L+DA  +F+ M   D VS
Sbjct: 136 ACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVS 195

Query: 126 WSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           W+ ++  ++K+       E F +     G + D  TL  V+  C       +G+  H   
Sbjct: 196 WNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFA 255

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
           + S +  + FV   LVDMYAK  ++D+A  +F  MP +D+V+W  M+             
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG----------- 304

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                Y++ G  + A  +F++M+++    +V++WSA I+ Y   G G +AL +   MLSS
Sbjct: 305 -----YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR--PDVKH---------YTCMV 349
            + PN +T +S+L  C+  G +  G  +       +A++   D++             ++
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHC-----YAIKYPMDLRKNGHGDENMVINQLI 414

Query: 350 DLLGRAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           D+  +  ++D A  + +S+S  E+D   W  ++G    H + + A      + E   Q 
Sbjct: 415 DMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQT 473



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 116/290 (40%), Gaps = 39/290 (13%)

Query: 12  SISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISS--LLS 69
           S+S K R   + T        HG     +     M    DCQ TR   P  F  S  L++
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM-FEEDCQ-TR---PNAFTISCALVA 486

Query: 70  CRNIFQI---RQVHAQIVAGG-TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           C ++  +   +Q+HA  +        L V+N L+ +YA    + DA  +F+ M E++ V+
Sbjct: 487 CASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVT 546

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-----RLI 180
           W+ ++ G+            F E  R G +LD  TL  V+ AC     I  G     R+ 
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLD 239
            D  +  G   + + C  LVD+  +   ++ A +L ++MP     V W  ++   +    
Sbjct: 607 TDFGVSPG--PEHYAC--LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGK 662

Query: 240 VILG------------------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           V LG                  T + +MYA  G       I   MR K +
Sbjct: 663 VELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGI 712


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/487 (43%), Positives = 297/487 (60%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N +L  YA    L +A A+F  M ++D+VSW+ M+  +S++       + F+E  
Sbjct: 385 NVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMG 444

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           RCG  ++      V+  C D   +  G  +H  ++K+G  +  FV               
Sbjct: 445 RCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFV--------------- 489

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCGS++ A   F+ M +++
Sbjct: 490 --------------------------------GNALLAMYFKCGSMEEAHSAFEEMEERD 517

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIA Y  HG GK+AL++F  M  +   P+ IT V +L ACSH+GLVE+G+  F 
Sbjct: 518 VVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFY 577

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  DF V    +HYTCM+DLLGRAGRLDEA+ L++ M  E D  +WGALLGA RIH+N 
Sbjct: 578 SMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNS 637

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L   AA+ + E +P+N G YVLLSN+YA++G+W+DV K+R +M  R +KK+PG++WIEV
Sbjct: 638 ELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEV 697

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK+H FSVGDS HP+ E+IY  L  L  +++ AGY+  T+  LHDV+EE K   L  HS
Sbjct: 698 QNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHS 757

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+A+G++  P G  IR++KNLRVC DCH+  K +SAI  R+II+RD+NRFHHF  G+
Sbjct: 758 EKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGS 817

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 818 CSCGDYW 824



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 32/288 (11%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N LL+   +  +L D  ALF+ M  +DSVS++VM+   +            R +     +
Sbjct: 173 NTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHG----LVSLARHYFDLAPE 228

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D+ +   ++ A      I   R + D    S  + D     AL+  Y +   I++A+++
Sbjct: 229 KDAVSWNGMLAAYVRNGRIQEARELFD----SRTEWDAISWNALMAGYVQRSQIEEAQKM 284

Query: 216 FDQMPTRDLVTWTVMIG----------ANKF-----LLDVILGTAVIDMYAKCGSIDSAR 260
           F++MP RD+V+W  M+           A +      + DV   TA++  YA+ G ++ A+
Sbjct: 285 FNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAK 344

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M  KN +SW+AM+AAY      ++A +LF  M    V     ++ ++L   +  G
Sbjct: 345 RVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAG 400

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +++E   +F  M      + D   +  M+    + G  +E L+L + M
Sbjct: 401 MLDEARAIFGMM-----PQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 153/370 (41%), Gaps = 69/370 (18%)

Query: 84  VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143
           + G     +I  N+ +  +     + DA  LF  M  R + +++ M+ G++         
Sbjct: 99  ITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQAL 158

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
             FR   R     DS++                  L+H + + S L              
Sbjct: 159 SFFRSIPRP----DSFSY---------------NTLLHALGVSSSLA------------- 186

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLL-------------DVILGTAVID 248
                  D R LFD+MP +D V++ VMI   AN  L+             D +    ++ 
Sbjct: 187 -------DVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLA 239

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            Y + G I  ARE+FD   + + ISW+A++A Y    Q ++A  +F  M    V    ++
Sbjct: 240 AYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VS 295

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           + +++   +  G + E  RLF     D A   DV  +T +V    + G L+EA ++ ++M
Sbjct: 296 WNTMVSGYARRGDMAEARRLF-----DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM 350

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDV 427
             +K+   W A++ A    + ++     AK L +  P +N   +  +   YA AG   + 
Sbjct: 351 P-DKNAVSWNAMMAAYVQRRMME----EAKELFDAMPCRNVASWNTMLTGYAQAGMLDEA 405

Query: 428 AKIRDLMTRR 437
             I  +M ++
Sbjct: 406 RAIFGMMPQK 415



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 5/191 (2%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           V+   F   L +C +I  +    Q+H++++  G      V N LL +Y    ++ +AH+ 
Sbjct: 450 VNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSA 509

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M+ERD VSW+ M+ G+++        E F    +   + D  TL  V+ AC     +
Sbjct: 510 FEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLV 569

Query: 175 VMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIG 232
             G    + +    G+         ++D+  +   +D+A  L   MP   D   W  ++G
Sbjct: 570 EKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLG 629

Query: 233 ANKFLLDVILG 243
           A++   +  LG
Sbjct: 630 ASRIHRNSELG 640


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/637 (38%), Positives = 354/637 (55%), Gaps = 66/637 (10%)

Query: 1   MSKLKKHGFLVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDP 60
           +S L K  F  S+S + +  + S T++    P           +P    P  + T  + P
Sbjct: 18  LSSLLKPTFFASLSLQYQSPNPSFTSS---APQFDNNQTHLKAIPSCSNPHAEST-CLTP 73

Query: 61  KF--FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            +  + S L SC   + I   +Q+HAQ+   G   + ++A KL+ +Y +  +L+ A  LF
Sbjct: 74  TYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLF 133

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + + + +   W+V++ G++    +    + + +    G+  D++T PFV++AC     I 
Sbjct: 134 DRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIE 193

Query: 176 MGRLIH-------------------DIVLKSG------------LDIDQFVCAALVDMYA 204
            GR IH                   D+  K G            L  D  +  +++  Y+
Sbjct: 194 HGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYS 253

Query: 205 KCKVIDDARQLFDQM------PTRDLVTWTVMIGAN-----------------KFLLDVI 241
           +    D    L  +M      PT   +   +   A+                 +F     
Sbjct: 254 QNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDK 313

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           + TA++DMYAKCGS+  AR +F+R+  K V+SW+AMI  Y  HG   +ALDLF  M  +R
Sbjct: 314 VKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM--NR 371

Query: 302 VL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
           V  P+ ITFV +L ACSH GL+EEG   F +M  D+ + P V+HYTCMVDLLG +GRLDE
Sbjct: 372 VAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDE 431

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  LI  M V  D G+WGALL +C+IH NV+L E+A + L+E +P + G+YV+LSN+YA 
Sbjct: 432 AYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQ 491

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           AG+W+ VAK+R LMT RRLKK    +WIEV+NK+H F  GD++HP S+EIY  L  +   
Sbjct: 492 AGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGL 551

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++ AGY P T    HDV+++ K   + SHSE+LAIAFGLI+TP GT + I KNLR+C DC
Sbjct: 552 MKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDC 611

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H  IK +S IT R I VRD NR+HHF+ G CSC DYW
Sbjct: 612 HVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 306/521 (58%), Gaps = 51/521 (9%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           SV     I+  + C+ + Q R++   +       N+   N ++  YA +  +  A   F+
Sbjct: 297 SVSWNAIIAGYVQCKRMDQARELFEAM----PCQNVSSWNTMITGYAQNGDIAQARNFFD 352

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M +RDS+SW+ ++ G+++          F E  R G +L+  T    +  C +   + +
Sbjct: 353 RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALEL 412

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           G+ +H  V+K+GL+   +V                                         
Sbjct: 413 GKQVHGRVVKAGLESGCYV----------------------------------------- 431

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                 G A++ MY KCG+ID A  +F+ + +K V+SW+ MIA Y  HG GK+AL LF  
Sbjct: 432 ------GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFES 485

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M  + +LP+ +T V +L ACSHTGLV++G   F SM  D+ +  + KHYTCM+DLLGRAG
Sbjct: 486 MKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAG 545

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           RLD+A  L+++M  E D   WGALLGA RIH N +L E AAK + E +P N G YVLLSN
Sbjct: 546 RLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSN 605

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA +GRW DV ++R  M  R +KK+PG++W+EV+NKIH F+VGDS HP+ + IY  L  
Sbjct: 606 LYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEE 665

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L  K++  GY+  T   LHDV+EE KV  L  HSEKLA+AFG++A P G  IR++KNLRV
Sbjct: 666 LDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRV 725

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ +KH+S I  R+II+RD++RFHHF GG CSC DYW
Sbjct: 726 CEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 154/375 (41%), Gaps = 61/375 (16%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF-I 150
           LI  N ++  Y     L DA  +F+ M ERD VSW+ M+ G+++  + +     F E  +
Sbjct: 204 LISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV 263

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R     D +T   ++        +   R + D + +     +     A++  Y +CK +D
Sbjct: 264 R-----DVFTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRMD 314

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR+LF+ MP +++ +W  MI                  YA+ G I  AR  FDRM Q++
Sbjct: 315 QARELFEAMPCQNVSSWNTMITG----------------YAQNGDIAQARNFFDRMPQRD 358

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
            ISW+A+IA Y   G G++AL LF  M       NR TF S L  C+    +E G ++  
Sbjct: 359 SISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG 418

Query: 331 SM------------------------WDDFAV------RPDVKHYTCMVDLLGRAGRLDE 360
            +                         DD  +        +V  +  M+    R G   E
Sbjct: 419 RVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKE 478

Query: 361 ALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGHYVLLS 415
           AL L ESM    +  D+     +L AC     VD       S+ +      N  HY  + 
Sbjct: 479 ALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMI 538

Query: 416 NVYANAGRWQDVAKI 430
           ++   AGR  D   +
Sbjct: 539 DLLGRAGRLDDAQNL 553



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 128/280 (45%), Gaps = 56/280 (20%)

Query: 212 ARQLFDQMPTRDLVTWTVMIG---------ANKFLLD------VILGTAVIDMYAKCGSI 256
           ARQLF++MPTRDLV+W VMI          A + L D      V+   A++  YA+ G +
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM-----------MLSSRVLPN 305
             A+EIFD M  KN ISW+ M+AAY  +G+ + A  LF             M+   V  N
Sbjct: 159 KEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRN 218

Query: 306 R----------------ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           R                +++ +++   +  G + E  RLF    ++  VR DV  +T MV
Sbjct: 219 RLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF----EESPVR-DVFTWTAMV 273

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNP 408
               + G LDEA ++ + M  EK+   W A++      K +D     A+ L E  P QN 
Sbjct: 274 SGYVQNGMLDEARRVFDGMP-EKNSVSWNAIIAGYVQCKRMD----QARELFEAMPCQNV 328

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
             +  +   YA  G   D+A+ R+   R   +    W  I
Sbjct: 329 SSWNTMITGYAQNG---DIAQARNFFDRMPQRDSISWAAI 365



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 133/326 (40%), Gaps = 64/326 (19%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           S+     IS  LS    +  RQ+  ++       +L+  N ++     ++ L  A  LF+
Sbjct: 80  SISWNAMISGCLSNDKFYLARQLFEKM----PTRDLVSWNVMISGCVRYRNLRAARLLFD 135

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREF-----IRCGMQLDSYTLPFVIRACRDR 171
            M ERD VSW+ M+ G+++        E F E      I     L +Y     I   R  
Sbjct: 136 QMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARR- 194

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
                       + +S  D +      ++  Y K   + DAR +FD+MP RD V+W  MI
Sbjct: 195 ------------LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMI 242

Query: 232 GA---NKFLL------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                N  LL            DV   TA++  Y + G +D AR +FD M +KN +SW+A
Sbjct: 243 SGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNA 302

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRV-------------------------LPNR--ITF 309
           +IA Y    +  +A +LF  M    V                         +P R  I++
Sbjct: 303 IIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISW 362

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDD 335
            +++   + +G  EE L LF  M  D
Sbjct: 363 AAIIAGYAQSGYGEEALHLFVEMKRD 388


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 330/603 (54%), Gaps = 102/603 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH   +  G + ++ V N ++ +YA    + +A+ +F  MK +D VSW+ MV G+S+ 
Sbjct: 384 RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQA 443

Query: 137 ADF---INCFE--------------------------------TFREFIRCGMQLDSYTL 161
                 ++ FE                                 FR+   CG + +  TL
Sbjct: 444 GRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTL 503

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ--------FVCAALVDMYAKCKVIDDAR 213
             ++ AC     ++ G+  H   +K  L++D          V   L+DMYAKC+  + AR
Sbjct: 504 VSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVAR 563

Query: 214 QLFDQMPT--RDLVTWTVMIGA--------------------------NKFLLDVIL--- 242
           ++FD +    RD+VTWTVMIG                           N F L   L   
Sbjct: 564 KMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVAC 623

Query: 243 ----------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                                          +IDMY+K G +D+A+ +FD M Q+N +SW
Sbjct: 624 ARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSW 683

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           ++++  YG HG+G+ AL +F  M    ++P+ ITF+ +LYACSH+G+V+ G+  F+ M  
Sbjct: 684 TSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           DF V P  +HY CMVDL GRAGRL EA+KLI  M +E    +W ALL ACR+H NV+L E
Sbjct: 744 DFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGE 803

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
            AA  LLE +  N G Y LLSN+YANA RW+DVA+IR  M R  +KK PG +WI+    +
Sbjct: 804 FAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGV 863

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
             F VGD +HPQS++IY  L  L ++++  GY+P T+F LHDVD+E K   L+ HSEKLA
Sbjct: 864 ATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLA 923

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           +A+G++       IRI KNLR+CGDCHS I ++S I    II+RD++RFHHF+ G+CSC+
Sbjct: 924 LAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCK 983

Query: 575 DYW 577
            YW
Sbjct: 984 GYW 986



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 160/330 (48%), Gaps = 32/330 (9%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKV 136
           HA +   G  +N+ V N ++ +Y    AL  AH +F+ +  R   D VSW+ +V  +   
Sbjct: 282 HATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341

Query: 137 ADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           +D       F +   R  M  D  +L  ++ AC      + GR +H   ++SGL  D FV
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFV 401

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
             A+VDMYAKC  +++A ++F +M  +D+V+W  M+                  Y++ G 
Sbjct: 402 GNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTG----------------YSQAGR 445

Query: 256 IDSAREIFDRMRQKN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           ++ A  +F+RM ++N    V++W+A+I  Y   GQG +ALD+F  M      PN +T VS
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVS 505

Query: 312 LLYACSHTGLVEEG-------LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           LL AC   G +  G       ++   ++        D+K    ++D+  +    + A K+
Sbjct: 506 LLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKM 565

Query: 365 IESMSV-EKDEGLWGALLGACRIHKNVDLA 393
            +S+S  ++D   W  ++G    H + + A
Sbjct: 566 FDSVSPKDRDVVTWTVMIGGYAQHGDANNA 595


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/609 (38%), Positives = 346/609 (56%), Gaps = 56/609 (9%)

Query: 22  SSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHA 81
           S TT       +GH +  +  ++ +QM    Q   SV     + ++   + +   R +H 
Sbjct: 213 SWTTLVAGYAQNGHAKRAL--QLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHG 270

Query: 82  QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
                G  + + V N LL +Y    +   A  +F GM+ +  VSW+ M+ G ++  +   
Sbjct: 271 YAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEE 330

Query: 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201
            F TF + +  G      T+  V+ AC +  D+  G  +H ++ K  LD +  V  +L+ 
Sbjct: 331 AFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390

Query: 202 MYAKCKVID------------------------------DARQLFDQMPTRDL-VTWTVM 230
           MY+KCK +D                              +A  LF  M ++ + +    +
Sbjct: 391 MYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTL 450

Query: 231 IGANKFLLD----------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           +G    L D                      V + TA++DMYAKCG+I +AR++FD M++
Sbjct: 451 VGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQE 510

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           ++VI+W+AMI  YG HG GK+ LDLF  M    V PN ITF+S++ ACSH+G VEEGL L
Sbjct: 511 RHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLL 570

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F SM +D+ + P + HY+ MVDLLGRAG+LD+A   I+ M ++    + GA+LGAC+IHK
Sbjct: 571 FKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHK 630

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           NV+L E AA+ L +  P   G++VLL+N+YA+   W  VAK+R  M  + L K PG +W+
Sbjct: 631 NVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWV 690

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
           E+ N+IH F  G + HP+S++IY  L TL ++++ AGY+PD +  +HDV+E+VK   L S
Sbjct: 691 ELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPD-SIHDVEEDVKKQLLSS 749

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSE+LAIAFGL+ T  GT + I KNLRVCGDCH   K++S +T R IIVRD  RFHHF+ 
Sbjct: 750 HSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKN 809

Query: 569 GACSCRDYW 577
           G+CSC DYW
Sbjct: 810 GSCSCGDYW 818



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 67/370 (18%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  I+  G  +NL V   ++ +YA  + + +A+ +F  M+ +D VSW+ +V G+++ 
Sbjct: 165 REIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQN 224

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  +   +    G + DS TL  ++ A  D K + +GR IH    +SG +    V 
Sbjct: 225 GHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVT 284

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+DMY KC     AR +F  M ++ +V+W  MI                         
Sbjct: 285 NALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEV 344

Query: 234 -----------------------------NKFLLD--VILGTAVIDMYAKCGSIDSAREI 262
                                        +K  LD  V +  ++I MY+KC  +D A  I
Sbjct: 345 PTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASI 404

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ + + NV +W+AMI  Y  +G  K+AL+LF MM S  +  +  T V ++ A +   + 
Sbjct: 405 FNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVN 463

Query: 323 EE-----GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
            +     GL + + M ++  V       T +VD+  + G +  A KL + M  E+    W
Sbjct: 464 RQAKWIHGLAVRACMDNNVFVS------TALVDMYAKCGAIKTARKLFDMMQ-ERHVITW 516

Query: 378 GALLGACRIH 387
            A++     H
Sbjct: 517 NAMIDGYGTH 526



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 167/369 (45%), Gaps = 57/369 (15%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L +C +  ++ Q+   I+  G     +   K++ ++    + ++A  +F  ++ +  V +
Sbjct: 54  LENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLY 113

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
            +M+ G++K +   +    F   +   ++L       +++ C +  D+  GR IH +++ 
Sbjct: 114 HIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIIT 173

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDV 240
           +G + + FV  A++ +YAKC+ ID+A ++F++M  +DLV+WT ++      G  K  L +
Sbjct: 174 NGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQL 233

Query: 241 IL------------------------------------------------GTAVIDMYAK 252
           +L                                                  A++DMY K
Sbjct: 234 VLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFK 293

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CGS   AR +F  MR K V+SW+ MI     +G+ ++A   F  ML    +P R+T + +
Sbjct: 294 CGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGV 353

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC++ G +E G      + D   +  +V     ++ +  +  R+D A  +  ++  EK
Sbjct: 354 LLACANLGDLERGW-FVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL--EK 410

Query: 373 DEGLWGALL 381
               W A++
Sbjct: 411 TNVTWNAMI 419


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 324/555 (58%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+ ++     ++L  A  L+ +Y+  + + DA   ++ M ++D ++W+ ++ G+S+ 
Sbjct: 304 RQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQC 363

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D ++    F +     +  +  TL  V+++    + I + + IH I +KSG+  D +V 
Sbjct: 364 GDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVI 423

Query: 197 AALVDMYAKCKVIDDARQ-------------------------------LFDQMPTRD-- 223
            +L+D Y KC  ID+A +                               L+ QM   D  
Sbjct: 424 NSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIK 483

Query: 224 --------LVTWTVMIGANK-------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                   L+     + A +             F+ D+    ++++MYAKCGSI+ A   
Sbjct: 484 PDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRA 543

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  +  + ++SWSAMI  Y  HG GK+AL LF  ML   V PN IT VS+L AC+H GLV
Sbjct: 544 FSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLV 603

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EG + F  M   F ++P  +HY CM+DLLGR+G+L+EA++L+ S+  E D  +WGALLG
Sbjct: 604 NEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLG 663

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           A RIHKN++L + AAK L + +P+  G +VLL+N+YA+AG W++VAK+R  M   ++KK 
Sbjct: 664 AARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKE 723

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIE+++K++ F VGD +H +S+EIY  L  L + L  AGY      ++H+VD+  K
Sbjct: 724 PGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEK 783

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              LY HSEKLA+AFGLIATP G  IR+ KNLR+C DCH+F K V  I  R IIVRD NR
Sbjct: 784 EKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINR 843

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G+CSC DYW
Sbjct: 844 FHHFKDGSCSCGDYW 858



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 191/435 (43%), Gaps = 77/435 (17%)

Query: 2   SKLKKHGF---LVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSV 58
           SK ++ G+   LV  S++L   S S+  +      G+ QN       +     C      
Sbjct: 27  SKCRRFGYARKLVDESSELDVVSWSSLLS------GYVQNGFVEEALLVFNEMCLLGVKC 80

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +   F S L +C   R++   R+VH   V  G  ++  VAN L+ +YA    L D+  LF
Sbjct: 81  NEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
            G+ ER+ VSW+ +   + +          F+E +R G+  + +++  ++ AC   ++  
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGD 200

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           +GR IH ++LK GLD+DQF   ALVDMY+K   I+ A  +F  +   D+V+W  +I    
Sbjct: 201 LGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCV 260

Query: 234 ----------------------NKFLL------------------------------DVI 241
                                 N F L                              D+ 
Sbjct: 261 LHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLF 320

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
               ++DMY+KC  +D AR  +D M +K++I+W+A+I+ Y   G    A+ LF  M S  
Sbjct: 321 AAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSED 380

Query: 302 VLPNRITFVSLLYACSHTGLVE-----EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           +  N+ T  ++L + +    ++       + + S ++ DF V         ++D  G+  
Sbjct: 381 IDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYV------INSLLDTYGKCN 434

Query: 357 RLDEALKLIESMSVE 371
            +DEA K+ E  + E
Sbjct: 435 HIDEASKIFEERTWE 449



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 171/380 (45%), Gaps = 57/380 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++HA ++  G   +  + N L+ +Y+  +    A  L +   E D VSWS ++ G+ +  
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                   F E    G++ + +T P V++AC  ++D+ MGR +H + + +G + D FV  
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IGA 233
            LV MYAKC ++DD+R+LF  +  R++V+W  +                        I  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 234 NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREIF 263
           N+F + +IL                                A++DMY+K G I+ A  +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             +   +V+SW+A+IA    H     AL L   M  S   PN  T  S L AC+  G  E
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKE 301

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-G 382
            G +L SS+        D+     +VD+  +   +D+A +  +SM  +KD   W AL+ G
Sbjct: 302 LGRQLHSSLI-KMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNALISG 359

Query: 383 ACRIHKNVDLAEMAAKSLLE 402
             +   ++D   + +K   E
Sbjct: 360 YSQCGDHLDAVSLFSKMFSE 379



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 172/403 (42%), Gaps = 77/403 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG--FS 134
           R++H  ++  G   +   AN L+ +Y+    +  A A+F  +   D VSW+ ++ G    
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              D         E    G + + +TL   ++AC       +GR +H  ++K     D F
Sbjct: 263 DCNDL--ALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLF 320

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
               LVDMY+KC+++DDAR+ +D MP +D++ W  +I                       
Sbjct: 321 AAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSED 380

Query: 234 ---NKFLLDVILGT------------------------------AVIDMYAKCGSIDSAR 260
              N+  L  +L +                              +++D Y KC  ID A 
Sbjct: 381 IDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEAS 440

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           +IF+    ++++++++MI AY  +G G++AL L+  M  + + P+     SLL AC++  
Sbjct: 441 KIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLS 500

Query: 321 LVEEGLRL------FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
             E+G +L      F  M D FA          +V++  + G +++A +    +    + 
Sbjct: 501 AYEQGKQLHVHAIKFGFMCDIFASNS-------LVNMYAKCGSIEDADRAFSEIP---NR 550

Query: 375 GL--WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G+  W A++G    H +   A      +L R    P H  L+S
Sbjct: 551 GIVSWSAMIGGYAQHGHGKEALRLFNQML-RDGVPPNHITLVS 592


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 306/521 (58%), Gaps = 51/521 (9%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           SV     I+  + C+ + Q R++   +       N+   N ++  YA +  +  A   F+
Sbjct: 216 SVSWNAIIAGYVQCKRMDQARELFEAM----PCQNVSSWNTMITGYAQNGDIAQARNFFD 271

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M +RDS+SW+ ++ G+++          F E  R G +L+  T    +  C +   + +
Sbjct: 272 RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALEL 331

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           G+ +H  V+K+GL+   +V                                         
Sbjct: 332 GKQVHGRVVKAGLESGCYV----------------------------------------- 350

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                 G A++ MY KCG+ID A  +F+ + +K V+SW+ MIA Y  HG GK+AL LF  
Sbjct: 351 ------GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFES 404

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M  + +LP+ +T V +L ACSHTGLV++G   F SM  D+ +  + KHYTCM+DLLGRAG
Sbjct: 405 MKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAG 464

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           RLD+A  L+++M  E D   WGALLGA RIH N +L E AAK + E +P N G YVLLSN
Sbjct: 465 RLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSN 524

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA +GRW DV ++R  M  R +KK+PG++W+EV+NKIH F+VGDS HP+ + IY  L  
Sbjct: 525 LYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEE 584

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L  K++  GY+  T   LHDV+EE KV  L  HSEKLA+AFG++A P G  IR++KNLRV
Sbjct: 585 LDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRV 644

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ +KH+S I  R+II+RD++RFHHF GG CSC DYW
Sbjct: 645 CEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 154/375 (41%), Gaps = 61/375 (16%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF-I 150
           LI  N ++  Y     L DA  +F+ M ERD VSW+ M+ G+++  + +     F E  +
Sbjct: 123 LISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPV 182

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R     D +T   ++        +   R + D + +     +     A++  Y +CK +D
Sbjct: 183 R-----DVFTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAGYVQCKRMD 233

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR+LF+ MP +++ +W  MI                  YA+ G I  AR  FDRM Q++
Sbjct: 234 QARELFEAMPCQNVSSWNTMITG----------------YAQNGDIAQARNFFDRMPQRD 277

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
            ISW+A+IA Y   G G++AL LF  M       NR TF S L  C+    +E G ++  
Sbjct: 278 SISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHG 337

Query: 331 SM------------------------WDDFAV------RPDVKHYTCMVDLLGRAGRLDE 360
            +                         DD  +        +V  +  M+    R G   E
Sbjct: 338 RVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKE 397

Query: 361 ALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGHYVLLS 415
           AL L ESM    +  D+     +L AC     VD       S+ +      N  HY  + 
Sbjct: 398 ALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMI 457

Query: 416 NVYANAGRWQDVAKI 430
           ++   AGR  D   +
Sbjct: 458 DLLGRAGRLDDAQNL 472



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 115/278 (41%), Gaps = 60/278 (21%)

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF-----IRCGMQLDSY 159
           ++ L  A  LF+ M ERD VSW+ M+ G+++        E F E      I     L +Y
Sbjct: 43  YRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAY 102

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
                I   R              + +S  D +      ++  Y K   + DAR +FD+M
Sbjct: 103 VQNGRIEDARR-------------LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM 149

Query: 220 PTRDLVTWTVMIGA---NKFLL------------DVILGTAVIDMYAKCGSIDSAREIFD 264
           P RD V+W  MI     N  LL            DV   TA++  Y + G +D AR +FD
Sbjct: 150 PERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD 209

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV---------------------- 302
            M +KN +SW+A+IA Y    +  +A +LF  M    V                      
Sbjct: 210 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 269

Query: 303 ---LPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
              +P R  I++ +++   + +G  EE L LF  M  D
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD 307



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 116/265 (43%), Gaps = 57/265 (21%)

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           AR LFDQMP RD+V+W  M+                  YA+ G +  A+EIFD M  KN 
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSG----------------YAQNGYVKEAKEIFDEMPCKNS 92

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPM-----------MLSSRVLPNR-------------- 306
           ISW+ M+AAY  +G+ + A  LF             M+   V  NR              
Sbjct: 93  ISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER 152

Query: 307 --ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
             +++ +++   +  G + E  RLF    ++  VR DV  +T MV    + G LDEA ++
Sbjct: 153 DEVSWNTMISGYAQNGELLEAQRLF----EESPVR-DVFTWTAMVSGYVQNGMLDEARRV 207

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGR 423
            + M  EK+   W A++      K +D     A+ L E  P QN   +  +   YA  G 
Sbjct: 208 FDGMP-EKNSVSWNAIIAGYVQCKRMD----QARELFEAMPCQNVSSWNTMITGYAQNG- 261

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWI 448
             D+A+ R+   R   +    W  I
Sbjct: 262 --DIAQARNFFDRMPQRDSISWAAI 284



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 14/151 (9%)

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           ++ +AR +FD+M +++V+SW+AM++ Y  +G  K+A ++F  M       N I++  +L 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM----PCKNSISWNGMLA 100

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           A    G +E+  RLF S  D      ++  + CM+    +  RL +A  + + M  E+DE
Sbjct: 101 AYVQNGRIEDARRLFESKAD-----WELISWNCMMGGYVKRNRLVDARGIFDRMP-ERDE 154

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
             W  ++      +N +L E  A+ L E  P
Sbjct: 155 VSWNTMISG--YAQNGELLE--AQRLFEESP 181


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/555 (40%), Positives = 325/555 (58%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VHA I  GG  +++ V   LL +Y    ++ +A  +F+ +   D +SW+VM+G +++ 
Sbjct: 149 KEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQS 208

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +    +    +  + G + ++ T   ++ AC     +   + +H   L +GL++D  V 
Sbjct: 209 GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG 268

Query: 197 AALVDMYAKCKVIDDARQLFD-------------------------------QMPTR--- 222
            ALV MYAK   IDDAR +FD                               QM T    
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 223 -DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
            D + +  ++ A                   +   +DV +GTA++ MY+K GSID AR +
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVV 388

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDRM+ +NV+SW+AMI+    HG G+ AL++F  M +  V P+R+TFV++L ACSH GLV
Sbjct: 389 FDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLV 448

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG   + +M   + + PDV H  CMVDLLGRAGRL EA   I++M+V+ DE  WGALLG
Sbjct: 449 DEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLG 508

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           +CR + NV+L E+ AK  L+  P+N   YVLLSN+YA AG+W  V+ +R +M  R ++K 
Sbjct: 509 SCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKE 568

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV+NKIH F V DS+HP+ +EI      + EK++  GYIPDT   L + + + K
Sbjct: 569 PGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDK 628

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
             ++ SHSEKLAI +GL+ TP G  IR+ KNLRVC DCH   K +S +  R IIVRDANR
Sbjct: 629 ELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANR 688

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 689 FHHFKDGVCSCGDYW 703



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/387 (26%), Positives = 178/387 (45%), Gaps = 59/387 (15%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            D   ++  L  C   +++   +QVH  I+      N  V N LL++Y     L +A  +
Sbjct: 26  TDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCV 85

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ + ++   SW+ M+ G+ +     +    FRE    G+Q ++ T   +++AC     +
Sbjct: 86  FDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSAL 145

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +H  +   GL+ D  V  AL+ MY KC  I++AR++FD +   D+++WTVMIGA 
Sbjct: 146 KWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAY 205

Query: 234 ------------------NKFLLDVILGTAVIDMYAKCGS-------------------- 255
                               F  + I   ++++  A  G+                    
Sbjct: 206 AQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDV 265

Query: 256 ---------------IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                          ID AR +FDRM+ ++V+SW+ MI A+  HG+G +A DLF  M + 
Sbjct: 266 RVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE 325

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
              P+ I F+S+L AC+  G +E   ++     D   +  DV+  T +V +  ++G +D+
Sbjct: 326 GCKPDAIMFLSILNACASAGALEWVKKIHRHALDS-GLEVDVRVGTALVHMYSKSGSIDD 384

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIH 387
           A  + + M V ++   W A++     H
Sbjct: 385 ARVVFDRMKV-RNVVSWNAMISGLAQH 410



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 148/341 (43%), Gaps = 73/341 (21%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+  DS+    V++ C  +KD++  + +HD ++KS ++ +  V   L+ +Y +C  + +A
Sbjct: 23  GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82

Query: 213 RQLFDQMPTRDLVTWTVMIGA---NKFLLDVI--------------LGTAVIDMYAKCGS 255
           R +FD +  +   +W  MI     +K   D +               GT +I + A C S
Sbjct: 83  RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKA-CAS 141

Query: 256 I--------------------------------------DSAREIFDRMRQKNVISWSAM 277
           +                                      + AR IFD +   ++ISW+ M
Sbjct: 142 LSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVM 201

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I AY   G GK+A  L   M      PN IT+VS+L AC+  G ++   R+      D  
Sbjct: 202 IGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHAL-DAG 260

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA----CRIHKNVDLA 393
           +  DV+  T +V +  ++G +D+A  + + M V +D   W  ++GA     R H+  DL 
Sbjct: 261 LELDVRVGTALVQMYAKSGSIDDARVVFDRMKV-RDVVSWNVMIGAFAEHGRGHEAYDL- 318

Query: 394 EMAAKSLLERQPQN--PGHYVLLS--NVYANAGRWQDVAKI 430
                  L+ Q +   P   + LS  N  A+AG  + V KI
Sbjct: 319 ------FLQMQTEGCKPDAIMFLSILNACASAGALEWVKKI 353


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/556 (41%), Positives = 315/556 (56%), Gaps = 56/556 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q R VH  + + G      + N L+ +Y     L +A  LF+ M +R+ VSW+ M+  +S
Sbjct: 34  QARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYS 93

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                    +     +R G++ + YT   V+RAC    ++   R +H  +LK GL+ D F
Sbjct: 94  NSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVF 150

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-------------------------- 228
           V +AL+D Y+K     DA  +F++M T DLV W                           
Sbjct: 151 VRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRAD 210

Query: 229 --------------------------VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                                     V +   K+  D+IL  A++DMY KCGS++ A  +
Sbjct: 211 FVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANLL 270

Query: 263 FDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F RM  +K+VISWS MIA    +G    AL LF  M S    PN IT + +L+ACSH GL
Sbjct: 271 FTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGL 330

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V +G   F SM + F + P  +HY C++DLLGRAG+LDEA+KLI  M+ E D   W  LL
Sbjct: 331 VNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILL 390

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+HKNVDLA  AAK +L+  P + G Y+LLSN+YAN+ +W+DVA++R  M  R +KK
Sbjct: 391 GACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKK 450

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +WIEV  ++H F +GD++HP+ EEI R L  L ++L   GY+PDTNF L D++ E 
Sbjct: 451 DPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQ 510

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
              +L  HSEKLAI FGL++ P    I I KNLR+CGDCH F K VS +  RVI++RD  
Sbjct: 511 MEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPI 570

Query: 562 RFHHFEGGACSCRDYW 577
           R+HHF GG CSC DYW
Sbjct: 571 RYHHFRGGVCSCGDYW 586



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 124/284 (43%), Gaps = 54/284 (19%)

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R  +  D+ T   +I+ C  R  +   RL+H+ V  +G +   F+   L++MY K  ++D
Sbjct: 9   RNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLD 68

Query: 211 DARQLFDQMPTRDLVTWTVMIGANK----------FLL---------------------- 238
           +AR LFD+MP R++V+WT MI A            FL+                      
Sbjct: 69  EARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD 128

Query: 239 -------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                              DV + +A+ID Y+K G    A  +F+ M   +++ W+++I 
Sbjct: 129 GLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIG 188

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +  +  G + L L+  M  +  + ++ T  S+L AC+   L+E G ++   +       
Sbjct: 189 GFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHV---LKYD 245

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            D+     ++D+  + G L++A  L   M  EKD   W  ++  
Sbjct: 246 QDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAG 289



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 26/237 (10%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D     S L +C  +  +   RQVH  ++      +LI+ N LL +Y    +L DA+ LF
Sbjct: 214 DQSTLTSVLRACTGLALLELGRQVHVHVLKYDQ--DLILNNALLDMYCKCGSLEDANLLF 271

Query: 116 NGM-KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
             M  E+D +SWS M+ G ++     +  + F      G + +  T+  V+ AC     +
Sbjct: 272 TRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLV 331

Query: 175 VMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIG 232
             G      +    G+D  +     ++D+  +   +D+A +L  +M    D VTW +++G
Sbjct: 332 NDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLG 391

Query: 233 ANKFLLDVIL----------------GTAVI--DMYAKCGSIDSAREIFDRMRQKNV 271
           A +   +V L                GT ++  ++YA     +   E+  +MR + V
Sbjct: 392 ACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGV 448


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 206/486 (42%), Positives = 300/486 (61%), Gaps = 54/486 (11%)

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           + +  + G+  DS T P V+++        +G+ IH  +++ G + + +V  ALV+MY  
Sbjct: 130 YTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGT 189

Query: 206 CKVIDDARQLFDQMPTRDLVTWT--------------------------------VMIGA 233
           C  + DARQ+FD++P R++V+W                                  M+G 
Sbjct: 190 CSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGV 249

Query: 234 ----------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                                 N+  L+V +GTA+IDMYAKCG +D A +IF  MR KNV
Sbjct: 250 LLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNV 309

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            +W+ +I+ Y  +G+G+ AL  F  M+  +  P+ +TF+ +L AC H GLV EG   F+S
Sbjct: 310 YTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTS 369

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M ++F +RP ++HY CMVDLLGRAG LDEA +LI++MS++ D  +W  LLGACRIH N+ 
Sbjct: 370 MKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLGACRIHGNIQ 429

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           L E A K LLE +P N  +YVLL+N+YA   RW  V ++R++M  RR++K+PG + IE++
Sbjct: 430 LGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVREMMDCRRVRKVPGCSSIEID 489

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           N +++F V +   P  EE+Y++L  +++KL+LAGY+ DT    +D++EE K  +L  HSE
Sbjct: 490 NVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTGMASYDIEEEEKEHSLMYHSE 549

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLA+AFGL+ +P G  +RI+KNLR+C DCH F K VS + RR I VRD NRFHHF GGAC
Sbjct: 550 KLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVYRRDISVRDRNRFHHFVGGAC 609

Query: 572 SCRDYW 577
           SC+DYW
Sbjct: 610 SCKDYW 615


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/570 (38%), Positives = 327/570 (57%), Gaps = 55/570 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + ++ SC ++     +HA+++     ++  + ++L+ +Y       DA  LF+ M  +D
Sbjct: 125 LVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKD 184

Query: 123 SVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            VSW+ ++ G S       C   F R     G Q +  TL  V+ AC D   +  G+ +H
Sbjct: 185 LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLH 244

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------------------- 222
            +V+K G+     V  +L++MY K   +D A QLF++MP R                   
Sbjct: 245 GVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAE 304

Query: 223 ---DLVTWTVMIGANK--------------------------------FLLDVILGTAVI 247
              DL       G N                                 F  D+I+ TA++
Sbjct: 305 KGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALL 364

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           ++YAK G ++++ +IF+ ++ ++ I+W+AM+A Y  H  G++A+ LF +M+   V  + +
Sbjct: 365 NLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHV 424

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF  LL ACSH+GLVEEG + F  M + + V P + HY+CMVDLLGR+GRL++A +LI+S
Sbjct: 425 TFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKS 484

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M +E   G+WGALLGACR++ NV+L +  A+ LL   P +  +Y++LSN+Y+ AG W+D 
Sbjct: 485 MPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDA 544

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           +K+R LM  RRL + PG ++IE  NKIH+F VGD  HP+S+EI+  L  L  K+  AG  
Sbjct: 545 SKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGCA 604

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P T F LHD+DEEVKV  +  HSEKLAIAFGL+ T  G  + I KNLR+CGDCHS  K  
Sbjct: 605 PKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFA 664

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S + +R II+RD+ RFHHF  G CSCRDYW
Sbjct: 665 SLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 329/561 (58%), Gaps = 59/561 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q + VH  ++      +L++ N +L++YA   +L  A  +F+ M  +D V+W+ M+ G+S
Sbjct: 109 QGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYS 168

Query: 135 K---VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           +    +        F E +R G++ + + L  +++ C      V G+ IH    K G   
Sbjct: 169 QDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQE 228

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------------------- 231
           + FV ++LVDMYA+C  + ++R +FD++ +++ V+W  +I                    
Sbjct: 229 NVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQ 288

Query: 232 ----GANKFLLDVIL------------------------------GTAVIDMYAKCGSID 257
               GA +F    +L                              G  ++ MYAK G+I 
Sbjct: 289 REGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNIC 348

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP-MMLSSRVLPNRITFVSLLYAC 316
            A+++FDR+ + +V+S ++M+  Y  HG GK+A++LF  MML   + PN ITF+S+L AC
Sbjct: 349 DAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTAC 408

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GL++EGL  F  M   + + P + HYT +VDL GRAG LD+A   IE M +E +  +
Sbjct: 409 SHAGLLDEGLYYFELM-KKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATI 467

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALLGA ++HKN ++   AA+ +LE  P  PG + LLSN+YA+AG+W+DVAK+R  M  
Sbjct: 468 WGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKD 527

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             LKK P  +W+E+EN +H FS  D +HPQ  ++Y M   L++K++  GY+PDT+     
Sbjct: 528 SGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVF 587

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VD++ K  NL  HSEKLA+AF L+ T  G+ IRIMKN+RVCGDCHS IK+VS + +R II
Sbjct: 588 VDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCHSAIKYVSLVVKREII 647

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF  G+CSCRDYW
Sbjct: 648 VRDTNRFHHFRDGSCSCRDYW 668


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 348/589 (59%), Gaps = 62/589 (10%)

Query: 51  DCQFTRSVDPKFFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           D + +  V  +F  SS+LS C  +  +   +Q+H++++  G   ++ V   L+ +YA   
Sbjct: 46  DMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCA 105

Query: 107 A---LTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLP 162
           A   + D+  +F  M E + +SW+ ++  +++  +      E F + I   ++ + ++  
Sbjct: 106 ADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFS 165

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            V++AC +  D   G  ++   +K G+     V  +L+ MYA+   ++DAR+ FD +  +
Sbjct: 166 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 225

Query: 223 DLVTWTVM------------------------IGANKFLLDVILG--------------- 243
           +LV++  +                        IG + F    +L                
Sbjct: 226 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 285

Query: 244 ---------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                           A+I MY++CG+I++A ++F+ M  +NVISW++MI  +  HG   
Sbjct: 286 GRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 345

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL++F  ML +   PN IT+V++L ACSH G++ EG + F+SM+ +  + P ++HY CM
Sbjct: 346 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 405

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGR+G L EA++ I SM +  D  +W  LLGACR+H N +L   AA+ +LE++P +P
Sbjct: 406 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP 465

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             Y+LLSN++A+AG+W+DV KIR  M  R L K  G +WIEVEN++H+F VG+++HPQ+ 
Sbjct: 466 AAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAW 525

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +IY+ L  L+ K++  GYIPDT+F LHD++EE K   L+ HSEK+A+AFGLI+T +   I
Sbjct: 526 QIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPI 585

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI KNLRVCGDCH+ IK++S  T R I+VRD+NRFHH + G CSC DYW
Sbjct: 586 RIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 149/320 (46%), Gaps = 67/320 (20%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A+ +F+ M ER+ V+W++M+  F+++    +  + F +    G   D +T   V+ AC +
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDLVTW 227
              + +G+ +H  V++ GL +D  V  +LVDMYAKC     +DD+R++F+QMP  ++++W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 228 TVMIGA-------------------------NKFLLDVIL-------------------- 242
           T +I A                         N F    +L                    
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 243 ----------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                     G ++I MYA+ G ++ AR+ FD + +KN++S++A++  Y  + + ++A  
Sbjct: 189 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 248

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----M 348
           LF  +  + +  +  TF SLL   +  G + +G ++   +     ++   K   C    +
Sbjct: 249 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNAL 303

Query: 349 VDLLGRAGRLDEALKLIESM 368
           + +  R G ++ A ++   M
Sbjct: 304 ISMYSRCGNIEAAFQVFNEM 323



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 42/221 (19%)

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A ++FD+M ++N+++W+ MI  +   G  + A+DLF  M  S  +P+R T+ S+L AC+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA---GRLDEALKLIESMSVEKDEG 375
            GL+  G +L S +     +  DV     +VD+  +    G +D++ K+ E M  E +  
Sbjct: 69  LGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVM 126

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS-------------------- 415
            W A++ A       D   +     +      P H+   S                    
Sbjct: 127 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 416 -----------------NVYANAGRWQDVAKIRDLMTRRRL 439
                            ++YA +GR +D  K  D++  + L
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 227


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/555 (42%), Positives = 314/555 (56%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VHAQ +  G + ++ VA  L+ +Y    ++  A  +F+ MK RD VSW+VM+ G+++ 
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAEN 338

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +  + F  F      G+Q D  T   ++ AC    ++   R IH  V  +G   D  V 
Sbjct: 339 GNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVS 398

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDL-------------------------------- 224
            ALV MYAKC  I DARQ+FD MP RD+                                
Sbjct: 399 TALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIE 458

Query: 225 ---VTWTVMIGANKFL--LDV-----------------ILGTAVIDMYAKCGSIDSAREI 262
              VT+  ++ A   L  LDV                  LG A+I M AK GS++ AR I
Sbjct: 459 PDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYI 518

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M +++VI+W+AMI  Y  HG  ++AL LF  ML  R  PN +TFV +L ACS  G V
Sbjct: 519 FDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFV 578

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG R F+ + +   + P VK Y CMVDLLGRAG LDEA  LI+SM V+    +W +LL 
Sbjct: 579 DEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLV 638

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N+D+AE AA+  L   P +   YV LS++YA AG W++VAK+R +M  R ++K 
Sbjct: 639 ACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKE 698

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G TWIEV  K+H F V D +HP   EIY  L  L   ++  GYIP T   LHDV E+ K
Sbjct: 699 QGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQK 758

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              +  HSEKLAIA+G+++ P GT IRI KNLRVC DCHS  K +S +T R II RDA+R
Sbjct: 759 EEAISYHSEKLAIAYGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASR 818

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 819 FHHFKDGVCSCGDYW 833



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 204/422 (48%), Gaps = 68/422 (16%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S L +C +   +   ++VHAQ+V  G +++  +   L+ +Y    ++ DA  +F+G+ 
Sbjct: 161 FLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLH 220

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD  +++VMVGG++K  D+   FE F    + G++ +  +   ++  C   + +  G+ 
Sbjct: 221 IRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKA 280

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H   + +GL  D  V  +L+ MY  C  I+ AR++FD M  RD+V+WTVMI        
Sbjct: 281 VHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGN 340

Query: 234 --NKFLL-----------DVILGTAVIDMYAKCGSIDSAREI------------------ 262
             + F L           D I    +++  A   +++ AREI                  
Sbjct: 341 IEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTA 400

Query: 263 -----------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
                            FD M +++V+SWSAMI AY  +G G +A + F +M  S + P+
Sbjct: 401 LVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPD 460

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL----GRAGRLDEA 361
            +T+++LL AC H G ++ G+ +++      A++ D+  +  + + L     + G ++ A
Sbjct: 461 GVTYINLLNACGHLGALDVGMEIYTQ-----AIKADLVSHVPLGNALIIMNAKHGSVERA 515

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLA-EMAAKSLLERQPQNPGHYVLLSNVYAN 420
             + ++M V +D   W A++G   +H N   A  +  + L ER   N   +V + +  + 
Sbjct: 516 RYIFDTM-VRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSR 574

Query: 421 AG 422
           AG
Sbjct: 575 AG 576



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 178/383 (46%), Gaps = 59/383 (15%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D + ++     C   R+    +QV   I+ GG   N+   N L+ +Y++   +T+A  +
Sbjct: 55  IDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQI 114

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ ++ +  V+W+ ++ G+++V      F  FR+ +  G++    T   V+ AC     +
Sbjct: 115 FDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGL 174

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +H  V+ +G   D  +  ALV MY K   +DDARQ+FD +  RD+ T+ VM+G  
Sbjct: 175 NWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGY 234

Query: 234 ----------------------------------------------------NKFLLDVI 241
                                                               N  L+D I
Sbjct: 235 AKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDI 294

Query: 242 -LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + T++I MY  CGSI+ AR +FD M+ ++V+SW+ MI  Y  +G  + A  LF  M   
Sbjct: 295 RVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEE 354

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+RIT++ ++ AC+ +  +     + S + D      D+   T +V +  + G + +
Sbjct: 355 GIQPDRITYMHIMNACAISANLNHAREIHSQV-DIAGFGTDLLVSTALVHMYAKCGAIKD 413

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
           A ++ ++M   +D   W A++GA
Sbjct: 414 ARQVFDAMP-RRDVVSWSAMIGA 435



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/398 (20%), Positives = 158/398 (39%), Gaps = 108/398 (27%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G  +DS T   + + C + +D  +G+ + D +++ G  ++ +    L+ +Y+ C  + +A
Sbjct: 52  GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEA 111

Query: 213 RQLFDQMPTRDLVTWTVMIGA--------NKFLL-----------DVILGTAVIDMYAKC 253
           RQ+FD +  + +VTW  +I            F L            +I   +V+D  +  
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 254 GSIDSARE-----------------------------------IFDRMRQKNVISWSAMI 278
             ++  +E                                   +FD +  ++V +++ M+
Sbjct: 172 AGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMV 231

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL----------------YACSHTGLV 322
             Y   G  +KA +LF  M    + PN+I+F+S+L                  C + GLV
Sbjct: 232 GGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLV 291

Query: 323 EE------GLRLFSS---------MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           ++       +R++++         ++D+  VR DV  +T M++     G +++A  L  +
Sbjct: 292 DDIRVATSLIRMYTTCGSIEGARRVFDNMKVR-DVVSWTVMIEGYAENGNIEDAFGLFAT 350

Query: 368 M---SVEKDEGLWGALLGAC----------RIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           M    ++ D   +  ++ AC           IH  VD+A      L+            L
Sbjct: 351 MQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVS---------TAL 401

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
            ++YA  G  +D  ++ D M RR +          VEN
Sbjct: 402 VHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVEN 439


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 348/589 (59%), Gaps = 62/589 (10%)

Query: 51  DCQFTRSVDPKFFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           D + +  V  +F  SS+LS C  +  +   +Q+H++++  G   ++ V   L+ +YA   
Sbjct: 41  DMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCA 100

Query: 107 A---LTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLP 162
           A   + D+  +F  M E + +SW+ ++  +++  +      E F + I   ++ + ++  
Sbjct: 101 ADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFS 160

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            V++AC +  D   G  ++   +K G+     V  +L+ MYA+   ++DAR+ FD +  +
Sbjct: 161 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 220

Query: 223 DLVTWTVM------------------------IGANKFLLDVILG--------------- 243
           +LV++  +                        IG + F    +L                
Sbjct: 221 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 280

Query: 244 ---------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                           A+I MY++CG+I++A ++F+ M  +NVISW++MI  +  HG   
Sbjct: 281 GRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 340

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL++F  ML +   PN IT+V++L ACSH G++ EG + F+SM+ +  + P ++HY CM
Sbjct: 341 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 400

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGR+G L EA++ I SM +  D  +W  LLGACR+H N +L   AA+ +LE++P +P
Sbjct: 401 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP 460

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             Y+LLSN++A+AG+W+DV KIR  M  R L K  G +WIEVEN++H+F VG+++HPQ+ 
Sbjct: 461 AAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAW 520

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +IY+ L  L+ K++  GYIPDT+F LHD++EE K   L+ HSEK+A+AFGLI+T +   I
Sbjct: 521 QIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPI 580

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI KNLRVCGDCH+ IK++S  T R I+VRD+NRFHH + G CSC DYW
Sbjct: 581 RIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 149/320 (46%), Gaps = 67/320 (20%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A+ +F+ M ER+ V+W++M+  F+++    +  + F +    G   D +T   V+ AC +
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDLVTW 227
              + +G+ +H  V++ GL +D  V  +LVDMYAKC     +DD+R++F+QMP  ++++W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 228 TVMIGA-------------------------NKFLLDVIL-------------------- 242
           T +I A                         N F    +L                    
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 243 ----------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                     G ++I MYA+ G ++ AR+ FD + +KN++S++A++  Y  + + ++A  
Sbjct: 184 KLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFL 243

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----M 348
           LF  +  + +  +  TF SLL   +  G + +G ++   +     ++   K   C    +
Sbjct: 244 LFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNAL 298

Query: 349 VDLLGRAGRLDEALKLIESM 368
           + +  R G ++ A ++   M
Sbjct: 299 ISMYSRCGNIEAAFQVFNEM 318



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 42/221 (19%)

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A ++FD+M ++N+++W+ MI  +   G  + A+DLF  M  S  +P+R T+ S+L AC+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA---GRLDEALKLIESMSVEKDEG 375
            GL+  G +L S +     +  DV     +VD+  +    G +D++ K+ E M  E +  
Sbjct: 64  LGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVM 121

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS-------------------- 415
            W A++ A       D   +     +      P H+   S                    
Sbjct: 122 SWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 416 -----------------NVYANAGRWQDVAKIRDLMTRRRL 439
                            ++YA +GR +D  K  D++  + L
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 222


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/556 (40%), Positives = 319/556 (57%), Gaps = 55/556 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +++VH   V  G +++L V +  +++Y    ++ DA  +F+ +  R+  +W+ M+GG ++
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQ 413

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                     F +  R G   D+ T   ++ A    + +   + +H   + +GL +D  V
Sbjct: 414 QKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRV 472

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------GANKFLL--------- 238
             ALV MYAKC     A+Q+FD M  R++ TWTVMI        G   F L         
Sbjct: 473 GNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGI 532

Query: 239 -------------------------------------DVILGTAVIDMYAKCGSIDSARE 261
                                                D+ +G A++ MYAKCGS+D AR 
Sbjct: 533 VPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARR 592

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M +++V SW+ MI     HG+G  ALDLF  M      PN  +FV++L ACSH GL
Sbjct: 593 VFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGL 652

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+EG R F S+  D+ + P ++HYTCMVDLLGRAG+L+EA   I +M +E  +  WGALL
Sbjct: 653 VDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALL 712

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC  + N+++AE AAK  L+ +P++   YVLLSN+YA  G W+    +R +M RR ++K
Sbjct: 713 GACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRK 772

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +WIEV+N+IH F VGD++HP+S+EIY  L  L ++L+  GY+PDT   L + D+E 
Sbjct: 773 EPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEY 832

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L SHSEKLAI +GL+ TP    IR+ KNLRVC DCH+  K +S +T R I+ RDA 
Sbjct: 833 KEQALCSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAK 892

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC DYW
Sbjct: 893 RFHHFKDGVCSCGDYW 908



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 207/448 (46%), Gaps = 56/448 (12%)

Query: 29  ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGT 88
            L  HG  Q   +  + M+ G       +       S++ S   +  +++VH      G 
Sbjct: 206 GLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGF 265

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           +++L V N L+++YA   ++ DA  +F+GM +RD +SW+ M+GG ++       F  F +
Sbjct: 266 ISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLK 325

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
             + G   DS T   ++            + +H   ++ GL  D  V +A V MY +C  
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGS 385

Query: 209 IDDARQLFDQMPTRDLVTWTVMIG--------------------------ANKFL----- 237
           IDDA+ +FD++  R++ TW  MIG                          A  F+     
Sbjct: 386 IDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445

Query: 238 ----------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                 +D+ +G A++ MYAKCG+   A+++FD M ++NV +W+
Sbjct: 446 NVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWT 505

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MI+    HG G +A  LF  ML   ++P+  T+VS+L AC+ TG +E  ++   S   +
Sbjct: 506 VMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEW-VKEVHSHAVN 564

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAE 394
             +  D++    +V +  + G +D+A ++ + M +E+D   W  ++G    H + +D  +
Sbjct: 565 AGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQHGRGLDALD 623

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAG 422
           +  K  LE    N   +V + +  ++AG
Sbjct: 624 LFVKMKLEGFKPNGYSFVAVLSACSHAG 651



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 168/362 (46%), Gaps = 65/362 (17%)

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+GG+++     +  + + +  R G Q +  T   +++AC     +  G+ IH  +++SG
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKFL 237
              D  V  ALV+MY KC  IDDA+ +FD+M  R++++WTVMIG            ++FL
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 238 -------------------------------------------LDVILGTAVIDMYAKCG 254
                                                      LD+ +G A++ MYAK G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           SID AR +FD M ++++ SW+ MI     HG+G++A  LF  M     LPN  T++S+L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 315 AC--SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           A   + TG +E  ++             D++    ++ +  + G +D+A  + + M  ++
Sbjct: 241 ASAITSTGALEW-VKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM-CDR 298

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ----NPGHYVLLSNVYANAGRWQDVA 428
           D   W A++G   + +N      A    L+ Q +    +   Y+ L N + + G W+ V 
Sbjct: 299 DVISWNAMIGG--LAQN-GCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVK 355

Query: 429 KI 430
           ++
Sbjct: 356 EV 357



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 158/371 (42%), Gaps = 65/371 (17%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +++VH+  V  G   +L V N L+++YA   ++ DA  +F+GM ERD  SW+VM+GG ++
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 136 VADFINCFETFREFIRCGM--QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                  F  F +  R G    L +Y       A      +   + +H    K+G   D 
Sbjct: 210 HGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDL 269

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------N 234
            V  AL+ MYAKC  IDDAR +FD M  RD+++W  MIG                     
Sbjct: 270 RVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQE 329

Query: 235 KFLLDVILGTAVIDMYAKCG-----------------------------------SIDSA 259
            F+ D     ++++ +   G                                   SID A
Sbjct: 330 GFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDA 389

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           + IFD++  +NV +W+AMI        G++AL LF  M      P+  TFV++L A    
Sbjct: 390 QLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA---- 445

Query: 320 GLVEEGLRLFSSMWDDFAVRP---DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
            + EE L     +   +A+     D++    +V +  + G    A ++ + M VE++   
Sbjct: 446 NVGEEALEWVKEV-HSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDM-VERNVTT 503

Query: 377 WGALLGACRIH 387
           W  ++     H
Sbjct: 504 WTVMISGLAQH 514



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 163/385 (42%), Gaps = 61/385 (15%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           ++S L +C +   ++   ++HA I+  G  +++ V   L+ +Y    ++ DA  +F+ M 
Sbjct: 33  YLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMV 92

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+ +SW+VM+GG +        F  F +  R G   +SYT   ++ A      +   + 
Sbjct: 93  ERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKE 152

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H   + +GL +D  V  ALV MYAK   IDDAR +FD M  RD+ +WTVMIG       
Sbjct: 153 VHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGR 212

Query: 234 -----NKFL----------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS----- 273
                + FL          L   L           G+++  +E+     +   IS     
Sbjct: 213 GQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVG 272

Query: 274 ------------------------------WSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                                         W+AMI     +G G +A  +F  M     +
Sbjct: 273 NALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV 332

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+  T++SLL     TG   E ++       +  +  D++  +  V +  R G +D+A  
Sbjct: 333 PDSTTYLSLLNTHVSTG-AWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQL 391

Query: 364 LIESMSVEKDEGLWGALLGACRIHK 388
           + + ++V ++   W A++G     K
Sbjct: 392 IFDKLAV-RNVTTWNAMIGGVAQQK 415



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 13/184 (7%)

Query: 59  DPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   ++S L +C +   +  +++VH+  V  G +++L V N L+++YA   ++ DA  +F
Sbjct: 535 DATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVF 594

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M ERD  SW+VM+GG ++    ++  + F +    G + + Y+   V+ AC     + 
Sbjct: 595 DDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVD 654

Query: 176 MGR-----LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
            GR     L  D  ++    ++ + C  +VD+  +   +++A+     MP       W  
Sbjct: 655 EGRRQFLSLTQDYGIEP--TMEHYTC--MVDLLGRAGQLEEAKHFILNMPIEPGDAPWGA 710

Query: 230 MIGA 233
           ++GA
Sbjct: 711 LLGA 714


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/487 (42%), Positives = 297/487 (60%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N +L  YA    L +A A+F+ M ++D+VSW+ M+  +S+        + F E  
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           RCG  ++      V+  C D   +  G  +H  ++++G  +  FV               
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV--------------- 420

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCG+++ AR  F+ M +++
Sbjct: 421 --------------------------------GNALLAMYFKCGNMEDARNAFEEMEERD 448

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIA Y  HG GK+AL++F MM ++   P+ IT V +L ACSH+GLVE+G+  F 
Sbjct: 449 VVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFY 508

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  DF V    +HYTCM+DLLGRAGRL EA  L++ M  E D  +WGALLGA RIH+N 
Sbjct: 509 SMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNP 568

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L   AA+ + E +P+N G YVLLSN+YA++G+W+D  K+R +M  R +KK+PG++WIEV
Sbjct: 569 ELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEV 628

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK+H FS GD  HP+ E+IY  L  L  +++ AGY+  T+  LHDV+EE K   L  HS
Sbjct: 629 QNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHS 688

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+A+G++  P G  IR++KNLRVCGDCH+  K++SAI  R+I++RD+NRFHHF GG+
Sbjct: 689 EKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGS 748

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 749 CSCGDYW 755



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y  +  + +A  LFN   E D +SW+ ++ G+ +        E F      G  
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP--GRD 223

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           + S+ +  ++     R D+V  R + D         D F   A+V  YA+  ++++AR++
Sbjct: 224 VVSWNI--MVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRV 277

Query: 216 FDQMPTRDLVTWTVMIGA--NKFLLD-------------VILGTAVIDMYAKCGSIDSAR 260
           FD MP R+ V+W  M+ A   + ++D             V     ++  YA+ G ++ A+
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M QK+ +SW+AM+AAY   G  ++ L LF  M       NR  F  +L  C+   
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 321 LVEEGLRL 328
            +E G++L
Sbjct: 398 ALECGMQL 405



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 54/333 (16%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           +I +NK +  +     + DA  LF  M  R + +++ M+ G+S           FR   R
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
                D+Y+   ++ A      +   R + D +       D      ++  +A   ++  
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSL 149

Query: 212 ARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMYAKCGSI 256
           AR  FD  P +D V+W  M+ A               ++   DVI   A++  Y + G +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKM 209

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             ARE+FDRM  ++V+SW+ M++ Y   G   +A  LF     +  + +  T+ +++   
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGY 265

Query: 317 SHTGLVEEGLRLFSSM-------WDD-----------------FAVRP--DVKHYTCMVD 350
           +  G++EE  R+F +M       W+                  F + P  +V  +  M+ 
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLT 325

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              +AG L+EA  + ++M  +KD   W A+L A
Sbjct: 326 GYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           V+   F   L +C +I  +    Q+H +++  G      V N LL +Y     + DA   
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M+ERD VSW+ M+ G+++        E F        + D  TL  V+ AC     +
Sbjct: 441 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 500

Query: 175 VMG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
             G      + HD  + +    + + C  ++D+  +   + +A  L   MP   D   W 
Sbjct: 501 EKGISYFYSMHHDFGVTA--KPEHYTC--MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556

Query: 229 VMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKN 270
            ++GA++   +  LG +  +                  +YA  G    AR++   M ++ 
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERG 616

Query: 271 V 271
           V
Sbjct: 617 V 617



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 44/231 (19%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           +VI     I  + + G +  A  +F  M +++  +++AM+A Y  +G+   A  LF  + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-------------------------- 332
                P+  ++ +LL+A + +  + +   LF  M                          
Sbjct: 97  R----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
           + D A   D   +  M+    R GR++EA  L  S + E D   W AL+        V  
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT-EWDVISWNALMSGY-----VQW 206

Query: 393 AEMA-AKSLLERQP-QNPGHYVLLSNVYANAG------RWQDVAKIRDLMT 435
            +M+ A+ L +R P ++   + ++ + YA  G      R  D A +RD+ T
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/487 (42%), Positives = 297/487 (60%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N +L  YA    L +A A+F+ M ++D+VSW+ M+  +S+        + F E  
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           RCG  ++      V+  C D   +  G  +H  ++++G  +  FV               
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV--------------- 420

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCG+++ AR  F+ M +++
Sbjct: 421 --------------------------------GNALLAMYFKCGNMEDARNAFEEMEERD 448

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIA Y  HG GK+AL++F MM ++   P+ IT V +L ACSH+GLVE+G+  F 
Sbjct: 449 VVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFY 508

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  DF V    +HYTCM+DLLGRAGRL EA  L++ M  E D  +WGALLGA RIH+N 
Sbjct: 509 SMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNP 568

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L   AA+ + E +P+N G YVLLSN+YA++G+W+D  K+R +M  R +KK+PG++WIEV
Sbjct: 569 ELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEV 628

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK+H FS GD  HP+ E+IY  L  L  +++ AGY+  T+  LHDV+EE K   L  HS
Sbjct: 629 QNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHS 688

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+A+G++  P G  IR++KNLRVCGDCH+  K++SAI  R+I++RD+NRFHHF GG+
Sbjct: 689 EKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGS 748

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 749 CSCGDYW 755



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 23/248 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y  +  + +A  LFN   E D++SW+ ++ G+ +        E F      G  
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP--GRD 223

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           + S+ +  ++     R D+V  R + D         D F   A+V  YA+  ++++AR++
Sbjct: 224 VVSWNI--MVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRV 277

Query: 216 FDQMPTRDLVTWTVMIGA--NKFLLD-------------VILGTAVIDMYAKCGSIDSAR 260
           FD MP R+ V+W  M+ A   + ++D             V     ++  YA+ G ++ A+
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M QK+ +SW+AM+AAY   G  ++ L LF  M       NR  F  +L  C+   
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 321 LVEEGLRL 328
            +E G++L
Sbjct: 398 ALECGMQL 405



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 141/333 (42%), Gaps = 54/333 (16%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           +I +NK +  +     + DA  LF  M  R + +++ M+ G+S           FR   R
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
                D+Y+   ++ A      +   R + D +       D      ++  +A   ++  
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSL 149

Query: 212 ARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMYAKCGSI 256
           AR  FD  P +D V+W  M+ A               ++   D I   A++  Y + G +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKM 209

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             ARE+FDRM  ++V+SW+ M++ Y   G   +A  LF     +  + +  T+ +++   
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGY 265

Query: 317 SHTGLVEEGLRLFSSM-------WDD-----------------FAVRP--DVKHYTCMVD 350
           +  G++EE  R+F +M       W+                  F + P  +V  +  M+ 
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLT 325

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              +AG L+EA  + ++M  +KD   W A+L A
Sbjct: 326 GYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           V+   F   L +C +I  +    Q+H +++  G      V N LL +Y     + DA   
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M+ERD VSW+ M+ G+++        E F        + D  TL  V+ AC     +
Sbjct: 441 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 500

Query: 175 VMG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
             G      + HD  + +    + + C  ++D+  +   + +A  L   MP   D   W 
Sbjct: 501 EKGISYFYSMHHDFGVTA--KPEHYTC--MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556

Query: 229 VMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKN 270
            ++GA++   +  LG +  +                  +YA  G    AR++   M ++ 
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERG 616

Query: 271 V 271
           V
Sbjct: 617 V 617



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 44/231 (19%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           +VI     I  + + G +  A  +F  M +++  +++AM+A Y  +G+   A  LF  + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-------------------------- 332
                P+  ++ +LL+A + +  + +   LF  M                          
Sbjct: 97  R----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
           + D A   D   +  M+    R GR++EA  L  S + E D   W AL+        V  
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT-EWDAISWNALMSGY-----VQW 206

Query: 393 AEMA-AKSLLERQP-QNPGHYVLLSNVYANAG------RWQDVAKIRDLMT 435
            +M+ A+ L +R P ++   + ++ + YA  G      R  D A +RD+ T
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 326/555 (58%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+HA I+  G  ++  V N L+++YA    +  A  +F+ M ER+  +W+ M  G++K 
Sbjct: 144 EQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKS 203

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            ++    + F E +   ++ D  TL  V+ AC    D+ +G  I+  V + GL  +  + 
Sbjct: 204 GNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLI 263

Query: 197 AALVDMYAKCKVIDDARQ-------------------------------LFDQMPTRDL- 224
            +LVDMYAKC  +D AR+                               LF +M   ++ 
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323

Query: 225 ---------VTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                    ++   ++GA              +  L V LGTA++D YAKCGS++S+ E+
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F +M  KNV+SW+ +I     +GQGKKAL+ F +ML   V PN +TF+ +L ACSH GLV
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLV 443

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG  LF SM  DF + P ++HY CMVD+LGRAG ++EA + I++M ++ +  +W  LL 
Sbjct: 444 DEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLA 503

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           +C++HKNV++ E + K L+  +P + G Y+LLSN+YA+ GRW+D  K+R  M  + +KK 
Sbjct: 504 SCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKT 563

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG + IE++  IH+F   D+ H QSEEIY  +  + ++++ AGY+P+T     D +E+ K
Sbjct: 564 PGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDK 623

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
             ++  HSEKLAIAFGLI +P GT IRI KNLRVC DCH+  K VS +  R I+VRD  R
Sbjct: 624 ESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTR 683

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G+CSC DYW
Sbjct: 684 FHHFKEGSCSCNDYW 698



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 179/384 (46%), Gaps = 70/384 (18%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKALTDAHALFN 116
           +PK  I  L  C+ I  + ++HA ++    L    VA  LL   A  L  ++  A ++F 
Sbjct: 25  NPKTLI--LEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFR 82

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            + E DS ++++M+ GF+           F+E     +Q D +T P +++ C   + +  
Sbjct: 83  QIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSE 142

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------ 230
           G  IH +++K G     FV   L+ MYA C  ++ AR++FD+M  R++ TW  M      
Sbjct: 143 GEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTK 202

Query: 231 -----------------------------IGANKFLLDVILG------------------ 243
                                        + A   L D+ LG                  
Sbjct: 203 SGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTL 262

Query: 244 -TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            T+++DMYAKCG +D+AR +FD+M +++V++WSAMI+ Y    + ++ALDLF  M  + +
Sbjct: 263 ITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANI 322

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGR 357
            PN IT VS+L +C+  G +E G       W  F ++       V   T ++D   + G 
Sbjct: 323 DPNEITMVSILSSCAVLGALETG------KWVHFFIKKKRMKLTVTLGTALMDFYAKCGS 376

Query: 358 LDEALKLIESMSVEKDEGLWGALL 381
           ++ ++++   M V K+   W  L+
Sbjct: 377 VESSIEVFGKMPV-KNVLSWTVLI 399


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/577 (38%), Positives = 336/577 (58%), Gaps = 58/577 (10%)

Query: 59  DPKFFISSLLSCRN--IFQIRQ-VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F+S L +  N  + Q+ Q VH +IV  G      V   L+ +YA    ++ A  +F
Sbjct: 147 DKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIF 206

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + + E++ V+W++++ G+++        E      +  +  +  T   +++ C     + 
Sbjct: 207 DRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALE 266

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------LVTWTV 229
            G+ +H  +++SG   + +V  +L+ MY KC  +++AR+LF  +P RD      +VT   
Sbjct: 267 HGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326

Query: 230 MIG--------------------------------ANKFL----------------LDVI 241
            +G                                +  FL                LDV 
Sbjct: 327 QLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVY 386

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY-GYHGQGKKALDLFPMMLSS 300
           L +A++ MYAKCGS+D A  +F++M ++NV++W+A+I      HG+ ++AL+ F  M   
Sbjct: 387 LQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQ 446

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+++TF S+L AC+H GLVEEG + F SM+ D+ ++P V+HY+C VDLLGRAG L+E
Sbjct: 447 GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 506

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  +I SM       +WGALL ACR+H +V+  E AA+++L+  P + G YV LS++YA 
Sbjct: 507 AENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAA 566

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           AGR++D  K+R +M +R + K PG +WIEV+ K+H F V D +HP+SE+IY  L  L+E+
Sbjct: 567 AGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQ 626

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT F LHDVDEE K   L+SHSE+LAI +GL+ TP G  IRI+KNLRVCGDC
Sbjct: 627 IKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDC 686

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+  K +S +  R II RDA RFHHF  G CSC D+W
Sbjct: 687 HTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 182/371 (49%), Gaps = 62/371 (16%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++ Q R+VHA I+  G   N  + N LL +YA   +LTDA  +F+ +++R+ VSW+ M+
Sbjct: 61  RSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMI 120

Query: 131 GGF---SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
             F   +K  +   C+ET +     G + D  T   ++ A  + + + +G+ +H  ++++
Sbjct: 121 EAFVAGNKNLEAFKCYETMK---LAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEA 177

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------- 233
           GL+++  V  +LV MYAKC  I  AR +FD++P +++VTWT++I                
Sbjct: 178 GLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELL 237

Query: 234 ----------NKFLLDVILG------------------------------TAVIDMYAKC 253
                     NK     IL                                ++I MY KC
Sbjct: 238 ETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKC 297

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ AR++F  +  ++V++W+AM+  Y   G   +A++LF  M    + P+++TF S+L
Sbjct: 298 GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL 357

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            +CS    ++EG R+   +        DV   + +V +  + G +D+A  +   MS E++
Sbjct: 358 TSCSSPAFLQEGKRIHQQLVHA-GYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-ERN 415

Query: 374 EGLWGALLGAC 384
              W A++  C
Sbjct: 416 VVAWTAIITGC 426



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 176/430 (40%), Gaps = 111/430 (25%)

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           G ++ ++++ S  V    K              I  G ++ S     +++ C   + +  
Sbjct: 6   GFRKVETLANSRDVSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQ 65

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           GR +H  +LKSG+  ++++   L+ MYAKC  + DAR++FD +  R++V+WT MI A   
Sbjct: 66  GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVA 125

Query: 234 -NKFL--------------------------------------------------LDVIL 242
            NK L                                                  L+  +
Sbjct: 126 GNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV 185

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GT+++ MYAKCG I  AR IFDR+ +KNV++W+ +IA Y   GQ   AL+L   M  + V
Sbjct: 186 GTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV 245

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLF-------------------------------SS 331
            PN+ITF S+L  C+    +E G ++                                  
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARK 305

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC---- 384
           ++ D   R DV  +T MV    + G  DEA+ L   M    ++ D+  + ++L +C    
Sbjct: 306 LFSDLPHR-DVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPA 364

Query: 385 ------RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
                 RIH+ +  A       L+           L ++YA  G   D + + + M+ R 
Sbjct: 365 FLQEGKRIHQQLVHAGYNLDVYLQSA---------LVSMYAKCGSMDDASLVFNQMSER- 414

Query: 439 LKKIPGWTWI 448
              +  WT I
Sbjct: 415 --NVVAWTAI 422


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 336/580 (57%), Gaps = 60/580 (10%)

Query: 58  VDP--KFFISSLLSCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           V+P  + F S L +C N+    Q R++HA I + GT  +L + N LL +YA  K L DA 
Sbjct: 217 VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAA 276

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F  +  RD VSWS M+  F++   F    E + +    G++ + YT   V+ AC    
Sbjct: 277 KIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVG 336

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--------------- 217
           D+  GR +HD +L +G  I      ALVD+Y     +D+AR LFD               
Sbjct: 337 DLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 396

Query: 218 ----------------------QMPTRDLVTWTVM------------------IGANKFL 237
                                 ++P   ++   V+                  I A+  +
Sbjct: 397 GYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI 456

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            D +L T++++MY++ G+++SAR++FD+M  ++ ++W+ +IA Y  HG+   AL L+  M
Sbjct: 457 SDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEM 516

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                 P+ +TF+ +LYACSH GL E+G +LF S+  D+A+ P++ HY+C++DLL RAGR
Sbjct: 517 ELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGR 576

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           L +A +LI +M VE ++  W +LLGA RIHK+V  A  AA  + +  P +P  YVLLSNV
Sbjct: 577 LSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNV 636

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           +A  G    +A +R+ M  R +KK  G +WIEV ++IH+F+VGD++HP+ +EI+  L  L
Sbjct: 637 HAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRL 696

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
           S K++ AGY+P++   LHDV E+ K   L  HSEKLAIAFGLIAT  GT +RI   LR+C
Sbjct: 697 SPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRIC 756

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCHS +K +SAI RR IIVRD++RFH F  G CSC DYW
Sbjct: 757 HDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 172/371 (46%), Gaps = 59/371 (15%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +L  C+++  +RQ+H +I +G    N+ + N+++  Y    ++  A   F+ +  ++  S
Sbjct: 33  ALRQCQDLESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYS 91

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD-IV 184
           W  M+  +++   +    + ++   R  +Q +      V+ AC   + +  G+ IH  I 
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYK---RMDLQPNPVVYTTVLGACASIEALEEGKAIHSRIS 148

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTVMIGA---------- 233
              GL +D  +  +L+ MYAKC  ++DA++LF++M  R  V +W  MI A          
Sbjct: 149 GTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEA 208

Query: 234 ------------------------NKFLL-----------------DVILGTAVIDMYAK 252
                                   N  LL                 D+ L  A++ MYA+
Sbjct: 209 IRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYAR 268

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           C  +D A +IF R+ +++V+SWSAMIAA+       +A++ +  M    V PN  TF S+
Sbjct: 269 CKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASV 328

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC+  G +  G  +   +  +   +  + + T +VDL    G LDEA  L + +   +
Sbjct: 329 LLACASVGDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NR 386

Query: 373 DEGLWGALLGA 383
           DEGLW  L+G 
Sbjct: 387 DEGLWTVLIGG 397



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 196/451 (43%), Gaps = 74/451 (16%)

Query: 29  ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQ---VHAQIVA 85
           A   +GH +  ++    M + P+        P  + + L +C +I  + +   +H++I  
Sbjct: 98  AYAQNGHYRAALDLYKRMDLQPN--------PVVYTTVLGACASIEALEEGKAIHSRISG 149

Query: 86  G-GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS-WSVMVGGFSKVADFINCF 143
             G   ++I+ N LL +YA   +L DA  LF  M  R SVS W+ M+  +++   F    
Sbjct: 150 TKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHF---E 206

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           E  R +    ++    T   V+ AC +   +  GR IH ++   G ++D  +  AL+ MY
Sbjct: 207 EAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMY 266

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLD 239
           A+CK +DDA ++F ++P RD+V+W+ MI A                        N +   
Sbjct: 267 ARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFA 326

Query: 240 VIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQK 269
            +L                              GTA++D+Y   GS+D AR +FD++  +
Sbjct: 327 SVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENR 386

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRL 328
           +   W+ +I  Y   G     L+L+  M ++  +P  +I +  ++ AC+  G   +  + 
Sbjct: 387 DEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA 446

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
            S +  D  +  D    T +V++  R G L+ A ++ + MS  +D   W  L+     H 
Sbjct: 447 HSDIEADGMI-SDFVLATSLVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGYAKHG 504

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
              LA +     +E +   P     +  +YA
Sbjct: 505 EHGLA-LGLYKEMELEGAEPSELTFMVVLYA 534



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 16/183 (8%)

Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
           D   +C+ ++  RQ+ D++            GA     +V LG  ++  Y KCGS+ SAR
Sbjct: 32  DALRQCQDLESVRQIHDRIS-----------GAAS--ANVFLGNEIVRAYGKCGSVASAR 78

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             FD + +KN  SW +M+ AY  +G  + ALDL+  M    + PN + + ++L AC+   
Sbjct: 79  VAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIE 135

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +EEG  + S +     ++ DV     ++ +  + G L++A +L E MS  +    W A+
Sbjct: 136 ALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAM 195

Query: 381 LGA 383
           + A
Sbjct: 196 IAA 198


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 318/555 (57%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+ ++     ++  +   L+ +Y+   ++ DA  +F  M ERD ++W+ ++ G S+ 
Sbjct: 232 RQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQN 291

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +       F      G+  +  TL  V+++    +   M R IH + LKSG + D +V 
Sbjct: 292 EEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVV 351

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRD------LVTWTVMIGANK--------------- 235
            +L+D Y KC  ++DA ++F++ P  D      LVT     G  +               
Sbjct: 352 NSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIK 411

Query: 236 ---------------------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                                            F+ D+  G ++++MYAKCGSI+ A   
Sbjct: 412 PDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCA 471

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F R+  + ++SWSAMI     HG GK+AL LF  ML   V PN IT VS+L AC+H GLV
Sbjct: 472 FSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLV 531

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            E    F+SM   F + P  +HY CM+DLLGRAG+L+ A++L+  M  + +  +WGALLG
Sbjct: 532 AEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLG 591

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           A RIHKN+DL E AA+ LL  +P+  G +VLL+N+YA+ G W  VA++R LM   ++KK 
Sbjct: 592 AARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKE 651

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +W+EV++K++ F VGD +H +S EIY  L  LS+ L+ AGY+P    +LHDV+   K
Sbjct: 652 PGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEK 711

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              LY HSEKLA+AFGLIATP G  IR+ KNLR+C DCH+ +K +S I  R IIVRD NR
Sbjct: 712 EQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNR 771

Query: 563 FHHFEGGACSCRDYW 577
           FHHF  G+CSC +YW
Sbjct: 772 FHHFREGSCSCGEYW 786



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 168/371 (45%), Gaps = 78/371 (21%)

Query: 63  FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S L +C   +++   +QVH  +V  G  ++  VAN L+ +YA      DA +LF+ + 
Sbjct: 13  FPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIP 72

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +R  VSW+ +   +            F + +  G++ + ++L  +I  C   +D V GR 
Sbjct: 73  DRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRK 132

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           IH  ++K G D D F   ALVDMYAK  +++DA  +FD++   D+V+W  +I        
Sbjct: 133 IHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEY 192

Query: 234 ------------------NKFLL------------------------------DVILGTA 245
                             N F L                              D  LG  
Sbjct: 193 HHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVG 252

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +IDMY+KC S+D AR +F  M ++++I+W+A+I+ +  + + ++A  LFP+M +  +  N
Sbjct: 253 LIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFN 312

Query: 306 RITFVSLL---------YACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRA 355
           + T  ++L         Y C         L L S   +D++ V         ++D  G+ 
Sbjct: 313 QTTLSTVLKSIAALQANYMCRQI----HALSLKSGFEFDNYVVNS-------LIDTYGKC 361

Query: 356 GRLDEALKLIE 366
           G +++A ++ E
Sbjct: 362 GHVEDATRVFE 372



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 183/415 (44%), Gaps = 65/415 (15%)

Query: 61  KFFISSLLS-CRNI---FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F +SS+++ C  +    Q R++H  ++  G  ++   AN L+ +YA    L DA ++F+
Sbjct: 111 EFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFD 170

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            + + D VSW+ ++ G           E  RE  + GM  + +TL   ++AC       +
Sbjct: 171 EIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALREL 230

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------ 230
           GR +H  ++K  +  D F+   L+DMY+KC  +DDAR +F  MP RD++ W  +      
Sbjct: 231 GRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQ 290

Query: 231 ------------------IGANKFLLDVILGT---------------------------- 244
                             IG N+  L  +L +                            
Sbjct: 291 NEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYV 350

Query: 245 --AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             ++ID Y KCG ++ A  +F+     +++ +++++ AY   GQG++AL L+  M    +
Sbjct: 351 VNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGI 410

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+     SLL AC+     E+G ++   +   F    D+     +V++  + G +++A 
Sbjct: 411 KPDSFVCSSLLNACASLSAYEQGKQVHVHIL-KFGFMSDIFAGNSLVNMYAKCGSIEDAS 469

Query: 363 KLIESMSVEKDEGL--WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
                + V    G+  W A++G    H     A    K +L +    P H  L+S
Sbjct: 470 CAFSRIPV---RGIVSWSAMIGGLAQHGYGKEALQLFKQML-KVGVPPNHITLVS 520



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 132/283 (46%), Gaps = 56/283 (19%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ + +  P V++AC   KD+V+G+ +H IV+ +G D D+FV  +LV +YAKC    DA
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 213 RQLFDQMPTRDLVTWTVM------------------------IGANKFLL---------- 238
           R LFD +P R +V+W  +                        I  N+F L          
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 239 --------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                               D     A++DMYAK G ++ A  +FD + + +++SW+A+I
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           A    H    +AL+L   M  S + PN  T  S L AC+   L E G +L SS+     +
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLI-KMDM 243

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             D      ++D+  +   +D+A +L+  +  E+D   W A++
Sbjct: 244 GSDSFLGVGLIDMYSKCNSMDDA-RLVFKLMPERDMIAWNAVI 285



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 103/201 (51%), Gaps = 7/201 (3%)

Query: 56  RSVDPKFFI-SSLL-SCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           R + P  F+ SSLL +C ++    Q +QVH  I+  G ++++   N L+ +YA   ++ D
Sbjct: 408 RGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIED 467

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A   F+ +  R  VSWS M+GG ++        + F++ ++ G+  +  TL  V+ AC  
Sbjct: 468 ASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNH 527

Query: 171 RKDIVMGR-LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
              +   +   + + +  G++  Q   A ++D+  +   ++ A +L ++MP + + + W 
Sbjct: 528 AGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWG 587

Query: 229 VMIGANKFLLDVILGTAVIDM 249
            ++GA +   ++ LG    +M
Sbjct: 588 ALLGAARIHKNIDLGEQAAEM 608


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 347/589 (58%), Gaps = 62/589 (10%)

Query: 51  DCQFTRSVDPKFFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           D + +  V  +F  SS+LS C  +  +   +Q+H++++  G   ++ V   L+ +YA   
Sbjct: 239 DMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCA 298

Query: 107 A---LTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLP 162
           A   + D+  +F  M E + +SW+ ++  + +  +      E F + I   ++ + ++  
Sbjct: 299 ADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFS 358

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            V++AC +  D   G  ++   +K G+     V  +L+ MYA+   ++DAR+ FD +  +
Sbjct: 359 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 418

Query: 223 DLVTWTVM------------------------IGANKFLLDVILG--------------- 243
           +LV++  +                        IG + F    +L                
Sbjct: 419 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 478

Query: 244 ---------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                           A+I MY++CG+I++A ++F+ M  +NVISW++MI  +  HG   
Sbjct: 479 GRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 538

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL++F  ML +   PN IT+V++L ACSH G++ EG + F+SM+ +  + P ++HY CM
Sbjct: 539 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 598

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGR+G L EA++ I SM +  D  +W  LLGACR+H N +L   AA+ +LE++P +P
Sbjct: 599 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP 658

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             Y+LLSN++A+AG+W+DV KIR  M  R L K  G +WIEVEN++H+F VG+++HPQ+ 
Sbjct: 659 AAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAW 718

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +IY+ L  L+ K++  GYIPDT+F LHD++EE K   L+ HSEK+A+AFGLI+T +   I
Sbjct: 719 QIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPI 778

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI KNLRVCGDCH+ IK++S  T R I+VRD+NRFHH + G CSC DYW
Sbjct: 779 RIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 176/366 (48%), Gaps = 70/366 (19%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KER 121
            + S +  RN    + VH +++  G   + +V N L+ +Y+       A  +F GM  +R
Sbjct: 50  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKR 109

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D VSWS MV  F+  +       TF + +  G   + Y    VIRAC +     +G +I+
Sbjct: 110 DLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY 169

Query: 182 DIVLKSG-LDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMI------GA 233
             V+K+G L+ D  V   L+DM+ K    +  A ++FD+MP R+LVTWT+MI      G 
Sbjct: 170 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 229

Query: 234 NKFLLDVIL------------------------------------------------GTA 245
            +  +D+ L                                                G +
Sbjct: 230 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 289

Query: 246 VIDMYAKC---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ-GKKALDLFPMMLSSR 301
           ++DMYAKC   GS+D +R++F++M + NV+SW+A+I AY   G+  K+A++LF  M+S  
Sbjct: 290 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 349

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGR 357
           + PN  +F S+L AC +      G +++S     +AV+  +    C    ++ +  R+GR
Sbjct: 350 IRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGR 404

Query: 358 LDEALK 363
           +++A K
Sbjct: 405 MEDARK 410



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 150/323 (46%), Gaps = 67/323 (20%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A+ +F+ M ER+ V+W++M+  F+++    +  + F +    G   D +T   V+ A
Sbjct: 199 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 258

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDL 224
           C +   + +G+ +H  V++ GL +D  V  +LVDMYAKC     +DD+R++F+QMP  ++
Sbjct: 259 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 318

Query: 225 VTWTVMIGA-------------------------NKFLLDVIL----------------- 242
           ++WT +I A                         N F    +L                 
Sbjct: 319 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 378

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        G ++I MYA+ G ++ AR+ FD + +KN++S++A++  Y  + + ++
Sbjct: 379 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 438

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC-- 347
           A  LF  +  + +  +  TF SLL   +  G + +G ++   +     ++   K   C  
Sbjct: 439 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCIC 493

Query: 348 --MVDLLGRAGRLDEALKLIESM 368
             ++ +  R G ++ A ++   M
Sbjct: 494 NALISMYSRCGNIEAAFQVFNEM 516



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 62/287 (21%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D  T   ++++C   ++  +G+L+H  +++SGL++D  V   L+ +Y+KC   + AR +F
Sbjct: 43  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 102

Query: 217 DQMPT-RDLVT------------------WTVM--------------------------- 230
           + M   RDLV+                  WT +                           
Sbjct: 103 EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYA 162

Query: 231 ----------IGANKFLLDVILGTAVIDMYAK-CGSIDSAREIFDRMRQKNVISWSAMIA 279
                     +       DV +G  +IDM+ K  G + SA ++FD+M ++N+++W+ MI 
Sbjct: 163 WVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMIT 222

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +   G  + A+DLF  M  S  +P+R T+ S+L AC+  GL+  G +L S +     + 
Sbjct: 223 RFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI-RLGLA 281

Query: 340 PDVKHYTCMVDLLGRA---GRLDEALKLIESMSVEKDEGLWGALLGA 383
            DV     +VD+  +    G +D++ K+ E M  E +   W A++ A
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 327


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/342 (57%), Positives = 249/342 (72%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F LDV +   ++DMY KCG I+ A+E+F ++ + +V SW+AMI+    HG GK+A+ LF 
Sbjct: 29  FELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFE 88

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            ML + V PN+ITFV +L  CSH GLV+EG   F SM  D  + P  +HY+CMVDL GRA
Sbjct: 89  QMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRA 148

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G LDEAL  I  M VE +  +WG+LLGACR+H N++LAE A + L+E  P+NPG YVLLS
Sbjct: 149 GCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIELTPENPGTYVLLS 208

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA AGRW D  K+R +M  R +KK PG +WIEV+NK+H F VGDS+HPQ EEIY  L 
Sbjct: 209 NIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQNKVHPFIVGDSSHPQIEEIYETLE 268

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
           TL+ +++ AGYIP+TNF LHDV+EE K   L  HSEKLAIAFG+I+TP GT IR++KNLR
Sbjct: 269 TLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLR 328

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VCGDCH+  K +S I  R I++RD +RFHHF+ G CSC DYW
Sbjct: 329 VCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQCSCGDYW 370



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 32/239 (13%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++RAC     +  G+ +H  ++K G ++D  V   LVDMY KC  I+DA+++F ++   D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 224 LVTWTVMI------GANK---FLLDVILGTAV-------IDMYAKC---GSIDSAREIFD 264
           + +W  MI      G  K    L + +L T V       + + + C   G +D  R  FD
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 265 RMRQKNVIS-----WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
            M + + IS     +S M+  +G  G   +AL+    M    V PN   + SLL AC   
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM---PVEPNASVWGSLLGACRVH 180

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA---LKLIESMSVEKDEG 375
           G +E   R    + +     P    Y  + ++   AGR D+A    K+++  SV+K+ G
Sbjct: 181 GNIELAERAVEQLIELTPENPGT--YVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPG 237



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 20/217 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +QVHA I+  G   ++ V+N L+ +Y     + DA  +F+ + E D  SW+ M+ G +
Sbjct: 16  QGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLA 75

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQ 193
           +          F + ++ G++ +  T   V+  C     +  GR   D + +  G+    
Sbjct: 76  QHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKA 135

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVIL---------- 242
              + +VD++ +   +D+A    +QMP   +   W  ++GA +   ++ L          
Sbjct: 136 EHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIELAERAVEQLIE 195

Query: 243 ------GTAVI--DMYAKCGSIDSAREIFDRMRQKNV 271
                 GT V+  ++YA  G  D A ++   M+ ++V
Sbjct: 196 LTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSV 232


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 336/580 (57%), Gaps = 60/580 (10%)

Query: 58  VDP--KFFISSLLSCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           V+P  + F S L +C N+    Q R++HA I + GT  +L + N LL +YA  K L DA 
Sbjct: 216 VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAA 275

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F  +  RD VSWS M+  F++   F    E + +    G++ + YT   V+ AC    
Sbjct: 276 KIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVG 335

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--------------- 217
           D+  GR +HD +L +G  I      ALVD+Y     +D+AR LFD               
Sbjct: 336 DLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIG 395

Query: 218 ----------------------QMPTRDLVTWTVM------------------IGANKFL 237
                                 ++P   ++   V+                  I A+  +
Sbjct: 396 GYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMI 455

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            D +L T++++MY++ G+++SAR++FD+M  ++ ++W+ +IA Y  HG+   AL L+  M
Sbjct: 456 SDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEM 515

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                 P+ +TF+ +LYACSH GL E+G +LF S+  D+A+ P++ HY+C++DLL RAGR
Sbjct: 516 ELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGR 575

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           L +A +LI +M VE ++  W +LLGA RIHK+V  A  AA  + +  P +P  YVLLSNV
Sbjct: 576 LSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNV 635

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           +A  G    +A +R+ M  R +KK  G +WIEV ++IH+F+VGD++HP+ +EI+  L  L
Sbjct: 636 HAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRL 695

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
           S K++ AGY+P++   LHDV E+ K   L  HSEKLAIAFGLIAT  GT +RI   LR+C
Sbjct: 696 SPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRIC 755

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCHS +K +SAI RR IIVRD++RFH F  G CSC DYW
Sbjct: 756 HDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 194/450 (43%), Gaps = 73/450 (16%)

Query: 29  ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQ---VHAQIVA 85
           A   +GH +  ++    M + P+        P  + + L +C +I  + +   +H++I  
Sbjct: 98  AYAQNGHYRAALDLYKRMDLQPN--------PVVYTTVLGACASIKALEEGKAIHSRISG 149

Query: 86  G-GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFE 144
             G   ++I+ N LL +YA   +L DA  LF  M  R   SW+ M+  +++   F    E
Sbjct: 150 TKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHF---EE 206

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
             R +    ++    T   V+ AC +   +  GR IH ++   G ++D  +  AL+ MYA
Sbjct: 207 AIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYA 266

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDV 240
           +CK +DDA ++F ++P RD+V+W+ MI A                        N +    
Sbjct: 267 RCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFAS 326

Query: 241 IL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +L                              GTA++D+Y   GS+D AR +FD++  ++
Sbjct: 327 VLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRD 386

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLF 329
              W+ +I  Y   G     L+L+  M ++  +P  +I +  ++ AC+  G   +  +  
Sbjct: 387 EGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAH 446

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
           S +  D  +  D    T +V++  R G L+ A ++ + MS  +D   W  L+     H  
Sbjct: 447 SDIEADGMI-SDFVLATSLVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGYAKHGE 504

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             LA +     +E +   P     +  +YA
Sbjct: 505 HGLA-LGLYKEMELEGAEPSELTFMVVLYA 533



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 162/358 (45%), Gaps = 60/358 (16%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +L  C+++  +RQ+H +I +G    N+ + N+++  Y    ++  A A F+ +  ++  S
Sbjct: 33  ALRQCQDLESVRQIHDRI-SGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYS 91

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W  M+  +++   +    + ++   R  +Q +      V+ AC   K +  G+ IH    
Sbjct: 92  WGSMLTAYAQNGHYRAALDLYK---RMDLQPNPVVYTTVLGACASIKALEEGKAIH---- 144

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
                                                     + + G     LDVIL  +
Sbjct: 145 ------------------------------------------SRISGTKGLKLDVILENS 162

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ MYAKCGS++ A+ +F+RM  ++V SW+AMIAAY   G  ++A+ L+  M    V P+
Sbjct: 163 LLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPS 219

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
             TF S+L ACS+ GL+++G R   ++        D+     ++ +  R   LD+A K+ 
Sbjct: 220 VRTFTSVLSACSNLGLLDQG-RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIF 278

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK--SLLERQPQNPGHYVLLSNVYANA 421
           + +   +D   W A++ A       DL + A +  S ++ +   P +Y   S + A A
Sbjct: 279 QRLP-RRDVVSWSAMIAA---FAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACA 332



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 17/183 (9%)

Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
           D   +C+ ++  RQ+ D++            GA     +V LG  ++  Y KCGS+ SAR
Sbjct: 32  DALRQCQDLESVRQIHDRIS-----------GAAS--ANVFLGNEIVRAYGKCGSVASAR 78

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             FD + +KN  SW +M+ AY  +G  + ALDL+  M    + PN + + ++L AC+   
Sbjct: 79  AAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIK 135

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +EEG  + S +     ++ DV     ++ +  + G L++A +L E MS  +    W A+
Sbjct: 136 ALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMS-GRSVSSWNAM 194

Query: 381 LGA 383
           + A
Sbjct: 195 IAA 197


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/487 (42%), Positives = 297/487 (60%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N +L  YA    L +A A+F+ M ++D+VSW+ M+  +S+        + F E  
Sbjct: 191 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 250

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           RCG  ++      V+  C D   +  G  +H  ++++G  +  FV               
Sbjct: 251 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV--------------- 295

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCG+++ AR  F+ M +++
Sbjct: 296 --------------------------------GNALLAMYFKCGNMEDARNAFEEMEERD 323

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIA Y  HG GK+AL++F MM ++   P+ IT V +L ACSH+GLVE+G+  F 
Sbjct: 324 VVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFY 383

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  DF V    +HYTCM+DLLGRAGRL EA  L++ M  E D  +WGALLGA RIH+N 
Sbjct: 384 SMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNP 443

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L   AA+ + E +P+N G YVLLSN+YA++G+W+D  K+R +M  R +KK+PG++WIEV
Sbjct: 444 ELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEV 503

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK+H FS GD  HP+ E+IY  L  L  +++ AGY+  T+  LHDV+EE K   L  HS
Sbjct: 504 QNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHS 563

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+A+G++  P G  IR++KNLRVCGDCH+  K++SAI  R+I++RD+NRFHHF GG+
Sbjct: 564 EKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGS 623

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 624 CSCGDYW 630



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y  +  + +A  LFN   E D +SW+ ++ G+ +        E F      G  
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP--GRD 98

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           + S+ +  ++     R D+V  R + D         D F   A+V  YA+  ++++AR++
Sbjct: 99  VVSWNI--MVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRV 152

Query: 216 FDQMPTRDLVTWTVMIGA--NKFLLD-------------VILGTAVIDMYAKCGSIDSAR 260
           FD MP R+ V+W  M+ A   + ++D             V     ++  YA+ G ++ A+
Sbjct: 153 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 212

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M QK+ +SW+AM+AAY   G  ++ L LF  M       NR  F  +L  C+   
Sbjct: 213 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 272

Query: 321 LVEEGLRL 328
            +E G++L
Sbjct: 273 ALECGMQL 280



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 46/233 (19%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------NKF 236
           D      ++  +A   ++  AR  FD  P +D V+W  M+ A               ++ 
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
             DVI   A++  Y + G +  ARE+FDRM  ++V+SW+ M++ Y   G   +A  LF  
Sbjct: 65  EWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF-- 122

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-------WDD-------------- 335
              +  + +  T+ +++   +  G++EE  R+F +M       W+               
Sbjct: 123 --DAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 180

Query: 336 ---FAVRP--DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              F + P  +V  +  M+    +AG L+EA  + ++M  +KD   W A+L A
Sbjct: 181 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 232



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           V+   F   L +C +I  +    Q+H +++  G      V N LL +Y     + DA   
Sbjct: 256 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 315

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M+ERD VSW+ M+ G+++        E F        + D  TL  V+ AC     +
Sbjct: 316 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 375

Query: 175 VMG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
             G      + HD  + +    + + C  ++D+  +   + +A  L   MP   D   W 
Sbjct: 376 EKGISYFYSMHHDFGVTA--KPEHYTC--MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 431

Query: 229 VMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKN 270
            ++GA++   +  LG +  +                  +YA  G    AR++   M ++ 
Sbjct: 432 ALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERG 491

Query: 271 V 271
           V
Sbjct: 492 V 492



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 52/246 (21%)

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           MP RD VT+ VMI +                +A  G +  AR  FD   +K+ +SW+ M+
Sbjct: 1   MPVRDSVTYNVMISS----------------HANHGLVSLARHYFDLAPEKDAVSWNGML 44

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM------ 332
           AAY  +G+ ++A  LF    +SR   + I++ +L+      G + E   LF  M      
Sbjct: 45  AAYVRNGRVEEARGLF----NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 100

Query: 333 -WD-------------------DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
            W+                   D A   DV  +T +V    + G L+EA ++ ++M  E+
Sbjct: 101 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP-ER 159

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIR 431
           +   W A++ A    + +D     AK L    P +N   +  +   YA AG  ++   + 
Sbjct: 160 NAVSWNAMVAAYIQRRMMD----EAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 215

Query: 432 DLMTRR 437
           D M ++
Sbjct: 216 DTMPQK 221


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 347/589 (58%), Gaps = 62/589 (10%)

Query: 51  DCQFTRSVDPKFFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           D + +  V  +F  SS+LS C  +  +   +Q+H++++  G   ++ V   L+ +YA   
Sbjct: 221 DMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCA 280

Query: 107 A---LTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLP 162
           A   + D+  +F  M E + +SW+ ++  + +  +      E F + I   ++ + ++  
Sbjct: 281 ADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFS 340

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            V++AC +  D   G  ++   +K G+     V  +L+ MYA+   ++DAR+ FD +  +
Sbjct: 341 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 400

Query: 223 DLVTWTVM------------------------IGANKFLLDVILG--------------- 243
           +LV++  +                        IG + F    +L                
Sbjct: 401 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 460

Query: 244 ---------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                           A+I MY++CG+I++A ++F+ M  +NVISW++MI  +  HG   
Sbjct: 461 GRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 520

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL++F  ML +   PN IT+V++L ACSH G++ EG + F+SM+ +  + P ++HY CM
Sbjct: 521 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 580

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGR+G L EA++ I SM +  D  +W  LLGACR+H N +L   AA+ +LE++P +P
Sbjct: 581 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDP 640

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             Y+LLSN++A+AG+W+DV KIR  M  R L K  G +WIEVEN++H+F VG+++HPQ+ 
Sbjct: 641 AAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAW 700

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +IY+ L  L+ K++  GYIPDT+F LHD++EE K   L+ HSEK+A+AFGLI+T +   I
Sbjct: 701 QIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPI 760

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI KNLRVCGDCH+ IK++S  T R I+VRD+NRFHH + G CSC DYW
Sbjct: 761 RIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 176/366 (48%), Gaps = 70/366 (19%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KER 121
            + S +  RN    + VH +++  G   + +V N L+ +Y+       A  +F GM  +R
Sbjct: 32  LLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKR 91

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D VSWS MV  F+  +       TF + +  G   + Y    VIRAC +     +G +I+
Sbjct: 92  DLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIY 151

Query: 182 DIVLKSG-LDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMI------GA 233
             V+K+G L+ D  V   L+DM+ K    +  A ++FD+MP R+LVTWT+MI      G 
Sbjct: 152 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 211

Query: 234 NKFLLDVIL------------------------------------------------GTA 245
            +  +D+ L                                                G +
Sbjct: 212 ARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 271

Query: 246 VIDMYAKC---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ-GKKALDLFPMMLSSR 301
           ++DMYAKC   GS+D +R++F++M + NV+SW+A+I AY   G+  K+A++LF  M+S  
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 331

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGR 357
           + PN  +F S+L AC +      G +++S     +AV+  +    C    ++ +  R+GR
Sbjct: 332 IRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGR 386

Query: 358 LDEALK 363
           +++A K
Sbjct: 387 MEDARK 392



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 150/323 (46%), Gaps = 67/323 (20%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A+ +F+ M ER+ V+W++M+  F+++    +  + F +    G   D +T   V+ A
Sbjct: 181 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 240

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDL 224
           C +   + +G+ +H  V++ GL +D  V  +LVDMYAKC     +DD+R++F+QMP  ++
Sbjct: 241 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300

Query: 225 VTWTVMIGA-------------------------NKFLLDVIL----------------- 242
           ++WT +I A                         N F    +L                 
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        G ++I MYA+ G ++ AR+ FD + +KN++S++A++  Y  + + ++
Sbjct: 361 YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 420

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC-- 347
           A  LF  +  + +  +  TF SLL   +  G + +G ++   +     ++   K   C  
Sbjct: 421 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCIC 475

Query: 348 --MVDLLGRAGRLDEALKLIESM 368
             ++ +  R G ++ A ++   M
Sbjct: 476 NALISMYSRCGNIEAAFQVFNEM 498



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 62/287 (21%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D  T   ++++C   ++  +G+L+H  +++SGL++D  V   L+ +Y+KC   + AR +F
Sbjct: 25  DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIF 84

Query: 217 DQMPT-RDLVT------------------WTVM--------------------------- 230
           + M   RDLV+                  WT +                           
Sbjct: 85  EGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYA 144

Query: 231 ----------IGANKFLLDVILGTAVIDMYAK-CGSIDSAREIFDRMRQKNVISWSAMIA 279
                     +       DV +G  +IDM+ K  G + SA ++FD+M ++N+++W+ MI 
Sbjct: 145 WVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMIT 204

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +   G  + A+DLF  M  S  +P+R T+ S+L AC+  GL+  G +L S +     + 
Sbjct: 205 RFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVI-RLGLA 263

Query: 340 PDVKHYTCMVDLLGRA---GRLDEALKLIESMSVEKDEGLWGALLGA 383
            DV     +VD+  +    G +D++ K+ E M  E +   W A++ A
Sbjct: 264 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 309


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 325/570 (57%), Gaps = 55/570 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + ++ SC ++     +HA+++     ++  + ++L+ +Y       DA  LF+ M  RD
Sbjct: 145 LVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRD 204

Query: 123 SVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            VSW+ ++ G S       C   F R     G Q +  TL  V+ AC     +  G+ +H
Sbjct: 205 LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLH 264

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------------------- 222
            +V+K G+     V  +L++MY K   +D A QLF++MP R                   
Sbjct: 265 GVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAE 324

Query: 223 ---DLVTWTVMIGANK--------------------------------FLLDVILGTAVI 247
              DL       G N                                 F  D+I+ TA++
Sbjct: 325 KGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALL 384

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           ++YAK G ++++ +IF+ ++ ++ I+W+AM+A Y  H  G++A+ LF +M+   V  + +
Sbjct: 385 NLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHV 444

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF  LL ACSH+GLVEEG + F  M + + V P + HY+CMVDLLGR+GRL++A +LI+S
Sbjct: 445 TFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKS 504

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M +E   G+WGALLGACR++ NV+L +  A+ LL   P +  +Y++LSN+Y+ AG W+  
Sbjct: 505 MPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXA 564

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           +K+R LM  RRL + PG ++IE  NKIH+F VGD  HP+S+EI+  L  L  K+  AG  
Sbjct: 565 SKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCA 624

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P T F LHD+DEEVKV  +  HSEKLAIAFGL+ T  G  + I KNLR+CGDCHS  K  
Sbjct: 625 PKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKFA 684

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S + +R II+RD+ RFHHF  G CSCRDYW
Sbjct: 685 SLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/561 (39%), Positives = 322/561 (57%), Gaps = 55/561 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++ + +Q+HA I+  G     +V + L+  Y+  +    +  +F   + + S +WS ++
Sbjct: 68  RSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVI 127

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             F++  + +   + F   I   +  D +  P   +AC       +G+ +H +V+K+G D
Sbjct: 128 SSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYD 187

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------------- 231
           +D FV ++LVDMYAKC  I +AR +FD+MP R++V+W+ MI                   
Sbjct: 188 VDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEA 247

Query: 232 -----GANKFLLDVIL------------------------------GTAVIDMYAKCGSI 256
                  N F L  ++                              G+++I +Y+KCG I
Sbjct: 248 LLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLI 307

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A  +FD +  KN+  W+AM+ A   H   K+A DLF  M ++ + PN ITF+ +LYAC
Sbjct: 308 EGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYAC 367

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLVEEG + F+ M   + + P  +HY  MVDLLGRAG+L EAL +I+ M  E  E +
Sbjct: 368 SHAGLVEEGKKYFALM-KKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESV 426

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGA +  CRIH N DLA  AA  + E    + G +V+LSN YA AGR++D AK R ++  
Sbjct: 427 WGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRD 486

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R +KK  G +WIE  N++H+F+ GD  H + +EIY+ L  L E++E AGY+ DT+F L +
Sbjct: 487 RGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLRE 546

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V  E K   +  HSE+LAIAFGLI+ P G  IRIMKNLRVCGDCH+ IK +S ++ RVII
Sbjct: 547 VGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVII 606

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFH FE G CSC DYW
Sbjct: 607 VRDNNRFHRFEDGKCSCADYW 627


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 319/575 (55%), Gaps = 58/575 (10%)

Query: 61  KFFISSLLSCR----NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           ++ I SLLS      N+   + +HA +   G  T++ V+N L+ +Y  +  + D   L+ 
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYE 474

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M +RD +SW+  + G      +      F   +  G   + YT   ++ +C    D+  
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHY 534

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---- 232
           GR +H  ++K+ LD + FVC AL+DMYAKC  ++DA   F+++  RDL TWTV+I     
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 233 --------------------ANKFLL------------------------------DVIL 242
                                N+F L                              D+ +
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G+A++DMYAKCG ++ A  +F+ + +++ I+W+ +I  Y  +GQG KAL  F MML   +
Sbjct: 655 GSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGI 714

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +TF  +L ACSH GLVEEG   F+SM+ DF + P V H  CMVD+LGR G+ DE  
Sbjct: 715 SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELE 774

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             I+ M + ++  +W  +LGA ++H N+ L E AA  L E QP+    Y+LLSN++A  G
Sbjct: 775 DFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEG 834

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW DV ++R LM+ + +KK PG +W+E   ++H F   D +HPQ +EI+  L  L  +L 
Sbjct: 835 RWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELA 894

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
              Y+P T + LH+V E  K  NL  HSE+LA+ F LI+T     IRI KNLR+C DCH 
Sbjct: 895 SIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHD 954

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +KH+S+IT + I+VRD  RFHHF+ GACSC D+W
Sbjct: 955 VMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 170/380 (44%), Gaps = 59/380 (15%)

Query: 61  KFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           K++ S L  C   R++   + +H  IV      +  +   L+ +YA  +    A  +   
Sbjct: 113 KYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAK 172

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M +RD VSW+ ++ G        +    F+E    G+  + +TL   ++AC     + +G
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
           + +H    K GL +D FV +ALVD+YAKC  I+ A ++F  MP ++ VTW V++      
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 234 --------------------NKFLLDVIL------------------------------G 243
                               N+F L  +L                              G
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
             ++DMY+KCG    A  +F  +++ +++ WSA+I      GQ ++++ LF +M     L
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN+ T  SLL A ++TG ++ G  + + +W  +    DV     +V +  + G + +  K
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVW-KYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 364 LIESMSVEKDEGLWGALLGA 383
           L ESM V++D   W A L  
Sbjct: 472 LYESM-VDRDLISWNAYLSG 490


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 325/576 (56%), Gaps = 56/576 (9%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKALTDAHALF 115
           +D    ++++  C  +  ++ + A +V      +  + +KL+   A  L   +  AH +F
Sbjct: 5   LDQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIF 64

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           +     +   W+ ++ G+S     I     +R+   CG+  +SYT  FV++AC     + 
Sbjct: 65  SCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLC 124

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----- 230
            G+ +H  ++K GLD +  +   L+ +YA C  +D A  +FD+MP  D  +W+ M     
Sbjct: 125 EGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYA 184

Query: 231 -------------------IGANKFLL------------------------------DVI 241
                              + ++ F L                              DV+
Sbjct: 185 QNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVV 244

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LGTA++ MY+KCGS+D+A ++F  M +++V +WS MIA Y  HG G+KAL LF  M  S+
Sbjct: 245 LGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSK 304

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            +PN +TF S+L ACSH+GLVE+G ++F +MW ++ + P +KHY CMVDL  RAG +  A
Sbjct: 305 TIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHA 364

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            K I++M +E +  LW  LLGAC+ H   DL E  ++ +L+  P +P +YVL+SNVYA+ 
Sbjct: 365 HKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASL 424

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GRW  V ++R LM  +  KK  GW+ IE+   +H+F +GD +HP+ E+IY ML  ++ KL
Sbjct: 425 GRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKL 484

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  G++  T   LHD+DEE K   L  HSE+LAIA+GL+ TP G+ IRI+KNLRVC DCH
Sbjct: 485 KQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCH 544

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             IK +S +  R IIVRD  RFHHF    CSC DYW
Sbjct: 545 EVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/555 (40%), Positives = 314/555 (56%), Gaps = 56/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H   +  G   +L V N L+ +YA    L  A  +FN MK RD VSW+ ++  F +   
Sbjct: 262 IHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKK 321

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI-DQFVCA 197
            +     + +    G+  D  TL  +     +  + +  R IH  V +    + D  +  
Sbjct: 322 PVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGN 381

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLV-------------------------------- 225
           A++DMYAK   ID AR++F+ +P +D++                                
Sbjct: 382 AIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV 441

Query: 226 ----TWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
               TW  ++ A                   N    D+ + T ++DMY KCG +  A  +
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSL 501

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  +  ++ +SW+A+I+ +G HG G KA+ LF  M S  V P+ ITFVSLL ACSH+GLV
Sbjct: 502 FYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLV 561

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG   F  M + + +RP +KHY CMVDL GRAG L++A   +++M V  D  +WGALLG
Sbjct: 562 DEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLG 621

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH+NV+L    +  LL+ + +N G+YVLLSN+YA  G W+ V ++R L   R LKK 
Sbjct: 622 ACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKT 681

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ IEV+ KI  F  G+ THP+ EEIY  L  L+ K++  GY+PD NF L DV+++ K
Sbjct: 682 PGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEK 741

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LA+AFG+I+TP  T ++I KNLRVCGDCH+  K +S IT R IIVRD+NR
Sbjct: 742 ENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNR 801

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 802 FHHFKDGVCSCGDYW 816



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 191/421 (45%), Gaps = 70/421 (16%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           +C N+   R+VH  ++  G   ++ +A   ++ Y+    ++ A  LF+ M  RD  +W+ 
Sbjct: 151 ACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNA 210

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+ GF          E F E     + +DS T+  ++  C    DI+ G LIH   +K G
Sbjct: 211 MISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLG 270

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------N 234
           L+ D FVC AL++MYAK   +  A  +F+QM  RD+V+W  ++ A              N
Sbjct: 271 LEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYN 330

Query: 235 KF-----LLDVILGTAVIDMYAKCGSIDSAREI--------------------------- 262
           K      + D++   ++  + A+ G+  S+R I                           
Sbjct: 331 KMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKL 390

Query: 263 ---------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM-LSSRVLPNRITFVSL 312
                    F+ +  K+VISW+++I  Y  +G   +A+D++  M   S  +PN+ T+VS+
Sbjct: 391 GFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSI 450

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L A S  G +++G++    +  +F +  D+   TC+VD+ G+ G+L +AL L   +  + 
Sbjct: 451 LTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQS 509

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNVYA-------NAGR 423
               W A++    +H        A K   E Q +   P H   +S + A       + G+
Sbjct: 510 SVS-WNAIISCHGLH---GYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQ 565

Query: 424 W 424
           W
Sbjct: 566 W 566



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 69/375 (18%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
            L C  +   +Q+HA +V  G   ++ ++ KL+  YA    +  A   F+ ++ +D  +W
Sbjct: 50  FLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTW 109

Query: 127 SVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           + M+  ++++  F    + F EF+    +Q D YT P VIRAC +  D   GR +H +VL
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVL 166

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF--------- 236
           K G + D ++ A+ +  Y++   +  A  LFD M  RD+ TW  MI              
Sbjct: 167 KLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 237 --------------------------LLDVILG-------------------TAVIDMYA 251
                                     L D+I G                    A+I+MYA
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYA 286

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           K G + SA  IF++M+ ++++SW++++AA+  + +   AL ++  M S  V+P+ +T VS
Sbjct: 287 KFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVS 346

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVR-----PDVKHYTCMVDLLGRAGRLDEALKLIE 366
           L    +     E G  L S     F  R      D+     ++D+  + G +D A K+ E
Sbjct: 347 LASVAA-----ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFE 401

Query: 367 SMSVEKDEGLWGALL 381
            + V KD   W +L+
Sbjct: 402 GLPV-KDVISWNSLI 415



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           + L   +I+ YA  G I  AR  FD+++ K+V +W++MI+AY   G    A+D F   LS
Sbjct: 75  IFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLS 134

Query: 300 SRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           +  L  +  TF  ++ AC   G +++G R    +        DV      +    R G +
Sbjct: 135 TSFLQSDHYTFPPVIRAC---GNLDDG-RKVHCLVLKLGFECDVYIAASFIHFYSRFGFV 190

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-----EMAAKSL 400
             A  L ++M + +D G W A++    ++  V  A     EM  KS+
Sbjct: 191 SLACNLFDNMMI-RDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 27/228 (11%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  + H Q++      ++ V+  L+ +Y     L DA +LF  +  + SVSW+ ++    
Sbjct: 462 QGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHG 521

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GL--DI 191
                +   + F+E    G++ D  T   ++ AC     +  G+    ++ ++ G+   +
Sbjct: 522 LHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSL 581

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVID-- 248
             + C  +VD++ +   ++ A      MP R D+  W  ++GA +   +V L   V D  
Sbjct: 582 KHYGC--MVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHL 639

Query: 249 ----------------MYAKCG---SIDSAREIFDRMRQKNVISWSAM 277
                           +YAK G    +D  R +      K    WS++
Sbjct: 640 LKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSI 687


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/571 (37%), Positives = 318/571 (55%), Gaps = 56/571 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            +S L +C N   +   R VH   V           N LL +YA    L  A  +F+ M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            R  V+W+ ++  +++          F E  R G+  D +T+  V+ AC     +  G+ 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H+ + ++ +  + FVC AL+DMYAKC  ++DA  +F +MP +D+++W  MIG       
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 234 -----------------------------------------------NKFLLDVILGTAV 246
                                                          N F  D  +  A+
Sbjct: 181 PNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANAL 240

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +DMY KCG    AR +FD +  K++I+W+ MIA YG HG G  A+  F  M  + + P+ 
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           ++F+S+LYACSH+GL++EG R F+ M D+  V+P ++HY C+VDLL R+G+L  A K I+
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           SM +E D  +WGALL  CRIH +V LAE  A+ + E +P+N G+YVLL+N YA A +W++
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           V K+R  + RR LKK PG +WIEV++K+H F  G+S+HPQ+++I  +L  L  K++  GY
Sbjct: 421 VKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGY 480

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
            P T + L + D   K   L  HSEKLA+AFG++  P    IR+ KNLRVCGDCH   K 
Sbjct: 481 FPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKF 540

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S    R I++RD+NRFHHF+ G C CR +W
Sbjct: 541 ISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 335/602 (55%), Gaps = 64/602 (10%)

Query: 35  HEQNPMNPRVPMQMGPDCQFTRSVDPKFFI--SSLLSCRNIFQI---RQVHAQIVAGGTL 89
           HE+N +  ++  +MG     +  V P  F   S+L +C  I  +   RQ+H+ ++     
Sbjct: 267 HEKNDLALKLLGKMG-----SYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDME 321

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            +  V   L+ +Y+    L DA  +F+ M  +D + W+ ++ G+S     I     F   
Sbjct: 322 PDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNM 381

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
            + G++ +  TL  ++++    +       +H I +KSG   D +V  +L+D Y KC ++
Sbjct: 382 YKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLL 441

Query: 210 DD-------------------------------ARQLFDQMPTRDL----VTWTVMIGAN 234
           +D                               A +++ +M  RD+      ++ +  A 
Sbjct: 442 EDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC 501

Query: 235 K-------------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                L DV  G ++++MYAKCGSID A  IF+ +  + ++SWS
Sbjct: 502 ANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWS 561

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           AMI     HG G+KAL LF  ML + +LPN IT VS+L AC+H GLV E  R F  M   
Sbjct: 562 AMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKL 621

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F + P  +HY CMVD+LGR GRLDEA+ L++ M  +    +WGALLGA RIHKN++L   
Sbjct: 622 FGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRH 681

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AA+ LL  +P+  G ++LL+N+YA+ G W +VAK+R  M    +KK PG +WIE+++K++
Sbjct: 682 AAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVY 741

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F VGD +HP+S+EIY  L  L E+L  AGY+P    +LHDV++  K   L+ HSEKLA+
Sbjct: 742 TFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAV 801

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AFGLIATP G  IR+ KNLRVC DCH+  K +S +  R IIVRD NRFHHF  G+CSC D
Sbjct: 802 AFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGD 861

Query: 576 YW 577
           YW
Sbjct: 862 YW 863



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 157/364 (43%), Gaps = 56/364 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           +VH  ++  G  ++   AN LL +YA       A A+F  + + D VSW+ ++ G     
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                 +   +     +    +TL   ++AC     + +GR +H  ++K  ++ D FV  
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGV 328

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------ 233
            L+DMY+KC ++ DAR +FD MP +D++ W  +I                          
Sbjct: 329 GLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEF 388

Query: 234 NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREIF 263
           N+  L  IL                                +++D Y KC  ++ A ++F
Sbjct: 389 NQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVF 448

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           +    ++++++++MI AY  +G G++AL ++  M    + P+   F SL  AC++    E
Sbjct: 449 EVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYE 508

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G ++   +     +  DV     +V++  + G +D+A  +   +S       W A++G 
Sbjct: 509 QGKQIHVHVL-KCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGG 566

Query: 384 CRIH 387
              H
Sbjct: 567 LAQH 570



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 148/392 (37%), Gaps = 127/392 (32%)

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           E D VSWS ++ G+ +         T+ E    G + + +T   V++ C   +++ +G+ 
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 180 IHDIVL----------------------------------------KSGLDIDQFVCAAL 199
           IH + L                                        K G D D F   AL
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------NKFLLDVI------------ 241
           +DMYAK    + A  +F ++P  D+V+W  +I        N   L ++            
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 242 ---------------------LGTAVIDM---------------YAKCGSIDSAREIFDR 265
                                L +A++ M               Y+KCG +  AR +FD 
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-------- 317
           M  K+VI W+++I+ Y   G   +A+ LF  M    +  N+ T  ++L + +        
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 318 ---HTGLVEEGLR----LFSSMWDD-------------FAVRP--DVKHYTCMVDLLGRA 355
              HT  ++ G +    + +S+ D              F V P  D+  YT M+    + 
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 356 GRLDEALKL---IESMSVEKDEGLWGALLGAC 384
           G  +EALK+   ++   ++ D  ++ +L  AC
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC 501



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 47/82 (57%)

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +++Y+KC     AR++     + +++SWSA+I+ Y  +G+G++AL  +  M       N 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 307 ITFVSLLYACSHTGLVEEGLRL 328
            TF S+L  CS T  +E G ++
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQI 170


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/577 (38%), Positives = 318/577 (55%), Gaps = 59/577 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            P    S + +C  I  ++    +H  ++  G   +++V    + +Y+    +  A  +F
Sbjct: 230 SPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVF 289

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  R+ VSW+ M+ G  +       F+ F   +R     D  T+  +++ C     + 
Sbjct: 290 YKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLA 349

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----- 230
            G+++H   ++S  + +  +  A+VD+Y+KC  +  A  +F++M  R+++TWT M     
Sbjct: 350 TGKILHGCAIRS-FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLA 408

Query: 231 -------------------IGANK------------------------------FLLDVI 241
                              I AN                               F  D++
Sbjct: 409 QNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIV 468

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
             TA++DMYAKCG I+ A  IF      K+V+ W++MI  YG HG G +A+ ++  M+  
Sbjct: 469 NMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEE 528

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + PN+ TF+SLL ACSH+ LVE+G+ LF+SM  D  +RP  KHY C+VDLL RAGR +E
Sbjct: 529 GLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEE 588

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  LIE M  +    +  ALL  CR HKN++L    +  LL     NPG Y++LSN+YA 
Sbjct: 589 AQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAE 648

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           A RW  V  IR LM  R LKK PG++ +E  N +H F  GD++HP  EEIY  L +L   
Sbjct: 649 ARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSA 708

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +E +GY+PDT+  L DVDEE+KV  L+ HSE+LAIAFGL+ TP G+ IRI KNLRVCGDC
Sbjct: 709 VETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRVCGDC 768

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+  K++S I +R IIVRDANRFHHF  G CSC DYW
Sbjct: 769 HTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 57/367 (15%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S +N+  ++  HAQI+     T+  VA KL+  Y+  ++L  A  +F+   +   +  + 
Sbjct: 41  SSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNA 100

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+ G+ +   +    E F       +++DS +  F ++AC    D  MG  I    ++ G
Sbjct: 101 MLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKG 160

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------- 233
           ++ ++FV ++++    K   I +A+++FD MP +D+V W  +IG                
Sbjct: 161 MEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFF 220

Query: 234 ---------------------------------NKFLLDVILG------TAVIDMYAKCG 254
                                            + ++L + LG      T+ +DMY+K G
Sbjct: 221 EMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMG 280

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            I+SAR +F +M  +N++SW+AMI+    +G   ++ DLF  ++ S    +  T VSLL 
Sbjct: 281 DIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQ 340

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            CS T  +  G  L       F    ++   T +VDL  + G L +A  +   M  +++ 
Sbjct: 341 GCSQTASLATGKILHGCAIRSF--ESNLILSTAIVDLYSKCGSLKQATFVFNRMK-DRNV 397

Query: 375 GLWGALL 381
             W A+L
Sbjct: 398 ITWTAML 404



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 20/207 (9%)

Query: 24  TTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVH 80
           T   + L  +GH ++ +  R+  QM  +     SV    F+S + SC ++  +   R +H
Sbjct: 401 TAMLVGLAQNGHAEDAL--RLFAQMQEEGIAANSVT---FVSLVHSCAHLGSLKRGRSIH 455

Query: 81  AQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GMKERDSVSWSVMVGGFSKVADF 139
             +   G   +++    L+ +YA    +  A  +F+ G   +D V W+ M+ G+      
Sbjct: 456 GHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHG 515

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV---- 195
                 + + I  G++ +  T   ++ AC   + +  G     I L + ++ D  +    
Sbjct: 516 YQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQG-----ISLFNSMERDHNIRPIE 570

Query: 196 --CAALVDMYAKCKVIDDARQLFDQMP 220
              A LVD+ ++    ++A+ L ++MP
Sbjct: 571 KHYACLVDLLSRAGRFEEAQALIEKMP 597


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 325/561 (57%), Gaps = 55/561 (9%)

Query: 72  NIFQIR-QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           N+F +   +H+ +   G   ++ V   ++  Y+    L DA  +F+ M  ++ VSW+ M+
Sbjct: 118 NLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMI 177

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            G  +   F    + FR  +  G++ D + +  V+RAC    D+  GR I   + + GL 
Sbjct: 178 CGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLS 237

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------- 230
            + FV  +LVDMY KC  +++AR +FD M  +D+V W+ M                    
Sbjct: 238 RNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEM 297

Query: 231 ------------IGA----------------------NKFLLDVILGTAVIDMYAKCGSI 256
                       +GA                       +FL + +LGT++ID YAKCGS+
Sbjct: 298 RKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSM 357

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A  ++  M++K+ + ++A+I+    +GQ   A  +F  M    + PN  TFV LL  C
Sbjct: 358 EEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGC 417

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           +H GLV++G   F+SM  DF+V P ++HY CMVDLL RAG LDEA  LI+ M ++ +  +
Sbjct: 418 THAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIV 477

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WG+LLG CR+H+   LAE   K L+E +P N GHYVLLSN+Y+ + RW +  KIR  +  
Sbjct: 478 WGSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNE 537

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + ++K+PG++W+EV+  +H+F VGD++HP S++IY  L +L + L+ AGY P T F L D
Sbjct: 538 KGMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFD 597

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+EE K   L  HSEKLA+AF LI+T     IR++KNLRVCGDCH  IKH+S +T R I+
Sbjct: 598 VEEEEKEHFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIV 657

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RD NRFH F  GACSCRDYW
Sbjct: 658 IRDNNRFHCFSDGACSCRDYW 678



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 68/348 (19%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           I   HK  T+++             ++ M+ G      F N    +    +  +  DS+T
Sbjct: 57  ILVFHKTPTNSNTFL----------YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFT 106

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
             FV++AC       +G +IH +V K+G D D FV   +V  Y+KC  + DA ++FD M 
Sbjct: 107 FSFVLKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMV 166

Query: 221 TRDLVTWTVMI-GANKF----------------------------------LLDVILGTA 245
            +++V+WT MI G  +F                                  L D+  G  
Sbjct: 167 VKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRW 226

Query: 246 VIDMYAKCG-------------------SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           +     +CG                   S++ AR +FD M +K+++ WSAMI  Y  +G 
Sbjct: 227 IDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGL 286

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHY 345
            ++A++LF  M    V P+    V  L +C+  G +E G      M +++F   P +   
Sbjct: 287 PREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG-- 344

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           T ++D   + G ++EAL + + M  EKD  ++ A++    ++  V  A
Sbjct: 345 TSLIDFYAKCGSMEEALGVYKMMK-EKDRVVFNAVISGLAMYGQVGAA 391


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 329/602 (54%), Gaps = 101/602 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   V    + N+ V N L+ +YA    + +A+ +F+ M  +D VSW+ MV G+S++
Sbjct: 249 KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQI 308

Query: 137 ADFINCFETF-----------------------------------REFIRCGMQLDSYTL 161
             F +    F                                   R+ +  G++ +  TL
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDI-------DQFVCAALVDMYAKCKVIDDARQ 214
             V+  C     ++ G+ IH   +K  +D+       +  V   L+DMYAKCK +D AR 
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428

Query: 215 LFDQMPT--RDLVTWTVMIG-------ANKFL---------------------------- 237
           +FD +    RD+VTWTVMIG       ANK L                            
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 238 ----------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                 + + +   +IDMYAKCGSI  AR +FD M  KN ++W+
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           +++  YG HG G++AL +F  M       + +T + +LYACSH+G++++G+  F+ M   
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTV 608

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F V P  +HY C+VDLLGRAGRL+ AL+LIE M +E    +W A L  CRIH  V+L E 
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEY 668

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AA+ + E    + G Y LLSN+YANAGRW+DV +IR LM  + +KK PG +W+E      
Sbjct: 669 AAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT 728

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F VGD THP ++EIY++L+   ++++  GY+P+T F LHDVD+E K   L+ HSEKLA+
Sbjct: 729 TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLAL 788

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+G++ TP+G  IRI KNLRVCGDCH+   ++S I    II+RD++RFHHF+ G+CSC+ 
Sbjct: 789 AYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKG 848

Query: 576 YW 577
           YW
Sbjct: 849 YW 850



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 41/359 (11%)

Query: 69  SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +C  I  +R     HA  +  G ++N+ V N L+ +Y+  ++L+DA  +F+ M   D VS
Sbjct: 136 ACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS 195

Query: 126 WSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           W+ ++  ++K+       E F       G + D+ TL  V+  C       +G+ +H   
Sbjct: 196 WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFA 255

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
           + S +  + FV   LVDMYAKC ++D+A  +F  M  +D+V+W  M+             
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG----------- 304

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                Y++ G  + A  +F++M+++    +V++WSA I+ Y   G G +AL +   MLSS
Sbjct: 305 -----YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH-----------YTCMV 349
            + PN +T +S+L  C+  G +  G  +       +A++  +                ++
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHC-----YAIKYPIDLRKNGHGDENMVINQLI 414

Query: 350 DLLGRAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           D+  +  ++D A  + +S+S  E+D   W  ++G    H + + A      + E   Q 
Sbjct: 415 DMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQT 473



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 113/288 (39%), Gaps = 35/288 (12%)

Query: 12  SISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISS--LLS 69
           S+S K R   + T        HG     +     M    DCQ TR   P  F  S  L++
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM-FEEDCQ-TR---PNAFTISCALVA 486

Query: 70  CRNIFQIR---QVHAQIVAGG-TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           C ++  +R   Q+HA  +        L V+N L+ +YA   +++DA  +F+ M  ++ V+
Sbjct: 487 CASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT 546

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD--- 182
           W+ ++ G+            F E  R G +LD  TL  V+ AC     I  G    +   
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVI 241
            V       + + C  LVD+  +   ++ A +L ++MP     V W   +   +    V 
Sbjct: 607 TVFGVSPGPEHYAC--LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664

Query: 242 LG------------------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           LG                  T + ++YA  G       I   MR K V
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGV 712


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/600 (37%), Positives = 324/600 (54%), Gaps = 90/600 (15%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I+ L  C  I   R +  QI        ++  N L+  Y  +  + +A  LF+ M  R+
Sbjct: 328 LITGLAQCGRIDDARILFEQIPE----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRN 383

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           ++SW+ M+ G+++           +E  R GM     +L  +  AC +   +  G  +H 
Sbjct: 384 TISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS 443

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCK-------------------------------VIDD 211
           + +K G   + F C AL+ MY KC+                               ++D+
Sbjct: 444 LAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDE 503

Query: 212 ARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILG---- 243
           AR  FD M +RD V+WT +I A                        N  +L ++LG    
Sbjct: 504 ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 244 --------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                      A+I MY KCG  DS R IFD M ++++ +W+ +
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADS-RRIFDLMEERDIFTWNTI 622

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I  Y  HG G++A+ ++  M S+ VLPN +TFV LL ACSH GLV+EG + F SM  D+ 
Sbjct: 623 ITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           + P  +HY CMVDLLGR G +  A + I  M +E D  +W ALLGAC+IHKN ++ + AA
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAA 742

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           + L   +P N G+YV+LSN+Y++ G W +VA++R +M ++ + K PG +W ++++K+H F
Sbjct: 743 EKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSF 802

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
             GD  H Q EEI   L  L   L+  GY+PDT F LHD+DEE K  +L  HSEKLA+A+
Sbjct: 803 VTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAY 862

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            L+ATP+G  I+I+KNLR+CGDCH+FIK VS +T+R I +RD NRFHHF  G+CSC D+W
Sbjct: 863 CLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 164/359 (45%), Gaps = 57/359 (15%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y     + DA  LF  M ER+ VSW+VM+ G+ ++ +    ++ F +  R G+ 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-CKVIDDARQ 214
            D       + A +   ++ +   +  + LK+G + D  +  A++++Y++   V+D A +
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 215 LFDQMPTRDLVTWTVMIGA--NKFLLDVILG-------------TAVIDMYAKCGSIDSA 259
            F+ M  R+  TW+ MI A  +   +D  +              TA+I   A+CG ID A
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDA 341

Query: 260 R-------------------------------EIFDRMRQKNVISWSAMIAAYGYHGQGK 288
           R                               E+FD+M  +N ISW+ MIA Y  +G+ +
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK--HYT 346
           +AL L   +  S +LP+  +  S+ +ACS+   +E G ++ S      AV+   +   + 
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS-----LAVKVGCQFNSFA 456

Query: 347 C--MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           C  ++ + G+   ++ A ++   M V KD   W + L A   +  +D A     ++L R
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR 514



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 145/335 (43%), Gaps = 42/335 (12%)

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           F +R  H ++   G    +    +L         + +A  +F+ M  RD ++W+ M+  +
Sbjct: 23  FAVRHAHGELEVSGCSARIRDLGRL-------GRVGEAREVFDAMPRRDIIAWNSMISAY 75

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                     + +       M+  +  L    R  R    ++  R + D +L+     + 
Sbjct: 76  CHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGR----VLEARRVFDGMLER----NT 127

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
               A++  Y +   I  AR+LFD MP+RD+ +W  M+      L ++            
Sbjct: 128 VAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMV------------ 175

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
                AR +F++M ++N++SW+ MI+ YG      KA D+F  M    +LP++  F S L
Sbjct: 176 ----DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASAL 231

Query: 314 YACSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR-AGRLDEALKLIESMSV 370
            A    G ++  E LR+ +          DV   T ++++  R    LD A+K  ESM +
Sbjct: 232 SAVKGLGNLDVLESLRVLAL---KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM-I 287

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           E++E  W  ++ A      +D    AA ++ ER P
Sbjct: 288 ERNEYTWSTMIAALSHGGRID----AAIAVYERDP 318



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
           L+V   +A I    + G +  ARE+FD M ++++I+W++MI+AY ++G    A DL+  +
Sbjct: 32  LEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAI 91

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                  N  T   LL      G V E  R+F  M +   V      +  M+    + G 
Sbjct: 92  SGG----NMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGD 142

Query: 358 LDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           +  A +L ++M   +D   W ++L G C   + VD     A++L E+ P+   + V  + 
Sbjct: 143 ITMARRLFDAMP-SRDVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPER--NLVSWTV 194

Query: 417 VYANAGRWQDVAKIRDLMTR 436
           + +  GR ++  K  D+  +
Sbjct: 195 MISGYGRIENHGKAWDIFCK 214


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/600 (37%), Positives = 324/600 (54%), Gaps = 90/600 (15%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I+ L  C  I   R +  QI        ++  N L+  Y  +  + +A  LF+ M  R+
Sbjct: 328 LITGLAQCGRIDDARILFEQIPE----PIVVSWNALITGYMQNGMVNEAKELFDKMPFRN 383

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           ++SW+ M+ G+++           +E  R GM     +L  +  AC +   +  G  +H 
Sbjct: 384 TISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS 443

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCK-------------------------------VIDD 211
           + +K G   + F C AL+ MY KC+                               ++D+
Sbjct: 444 LAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDE 503

Query: 212 ARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILG---- 243
           AR  FD M +RD V+WT +I A                        N  +L ++LG    
Sbjct: 504 ARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGS 563

Query: 244 --------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                      A+I MY KCG  DS R IFD M ++++ +W+ +
Sbjct: 564 LGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADS-RRIFDLMEERDIFTWNTI 622

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I  Y  HG G++A+ ++  M S+ VLPN +TFV LL ACSH GLV+EG + F SM  D+ 
Sbjct: 623 ITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYG 682

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           + P  +HY CMVDLLGR G +  A + I  M +E D  +W ALLGAC+IHKN ++ + AA
Sbjct: 683 LTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAA 742

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           + L   +P N G+YV+LSN+Y++ G W +VA++R +M ++ + K PG +W ++++K+H F
Sbjct: 743 EKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSF 802

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
             GD  H Q EEI   L  L   L+  GY+PDT F LHD+DEE K  +L  HSEKLA+A+
Sbjct: 803 VTGDKQHEQIEEIVATLEELYTLLKATGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAY 862

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            L+ATP+G  I+I+KNLR+CGDCH+FIK VS +T+R I +RD NRFHHF  G+CSC D+W
Sbjct: 863 CLLATPKGMPIQILKNLRICGDCHTFIKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 164/359 (45%), Gaps = 57/359 (15%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y     + DA  LF  M ER+ VSW+VM+ G+ ++ +    ++ F +  R G+ 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-CKVIDDARQ 214
            D       + A +   ++ +   +  + LK+G + D  +  A++++Y++   V+D A +
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 215 LFDQMPTRDLVTWTVMIGA--NKFLLDVILG-------------TAVIDMYAKCGSIDSA 259
            F+ M  R+  TW+ MI A  +   +D  +              TA+I   A+CG ID A
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDA 341

Query: 260 R-------------------------------EIFDRMRQKNVISWSAMIAAYGYHGQGK 288
           R                               E+FD+M  +N ISW+ MIA Y  +G+ +
Sbjct: 342 RILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSE 401

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK--HYT 346
           +AL L   +  S +LP+  +  S+ +ACS+   +E G ++ S      AV+   +   + 
Sbjct: 402 EALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS-----LAVKVGCQFNSFA 456

Query: 347 C--MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           C  ++ + G+   ++ A ++   M V KD   W + L A   +  +D A     ++L R
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR 514



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 145/335 (43%), Gaps = 42/335 (12%)

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           F +R  H ++   G    +    +L         + +A  +F+ M  RD ++W+ M+  +
Sbjct: 23  FAVRHAHGELEVSGCSARIRDLGRL-------GRVGEAREVFDAMPRRDIIAWNSMISAY 75

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                     + +       M+  +  L    R  R    ++  R + D +L+     + 
Sbjct: 76  CHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGR----VLEARRVFDGMLER----NT 127

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
               A++  Y +   I  AR+LFD MP+RD+ +W  M+      L ++            
Sbjct: 128 VAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMV------------ 175

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
                AR +F++M ++N++SW+ MI+ YG      KA D+F  M    +LP++  F S L
Sbjct: 176 ----DARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASAL 231

Query: 314 YACSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR-AGRLDEALKLIESMSV 370
            A    G ++  E LR+ +          DV   T ++++  R    LD A+K  ESM +
Sbjct: 232 SAVKGLGNLDVLESLRVLAL---KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESM-I 287

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           E++E  W  ++ A      +D    AA ++ ER P
Sbjct: 288 ERNEYTWSTMIAALSHGGRID----AAIAVYERDP 318



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 95/200 (47%), Gaps = 18/200 (9%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
           L+V   +A I    + G +  ARE+FD M ++++I+W++MI+AY ++G    A DL+  +
Sbjct: 32  LEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAI 91

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                  N  T   LL      G V E  R+F  M +   V      +  M+    + G 
Sbjct: 92  SGG----NMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGD 142

Query: 358 LDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           +  A +L ++M   +D   W ++L G C   + VD     A++L E+ P+   + V  + 
Sbjct: 143 ITMARRLFDAMP-SRDVSSWNSMLTGYCHSLQMVD-----ARNLFEKMPER--NLVSWTV 194

Query: 417 VYANAGRWQDVAKIRDLMTR 436
           + +  GR ++  K  D+  +
Sbjct: 195 MISGYGRIENHGKAWDIFCK 214


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 329/568 (57%), Gaps = 55/568 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I++ +  R +++ RQVHA+++       + +  +L+ +Y    AL DA  + + M ER  
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+ G+S+    +   + F + +R G   + YTL  V+ +C   + I  G+ +H +
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFL 237
           ++K+  +   FV ++L+DMYAK + I +AR++FD +P RD+V+ T +I      G ++  
Sbjct: 169 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 228

Query: 238 LD------------------------------------------------VILGTAVIDM 249
           LD                                                V L  ++IDM
Sbjct: 229 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 288

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCG +  +R +FD M +++V+SW+AM+  YG HG G + + LF   L   V P+ +T 
Sbjct: 289 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTL 347

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           +++L  CSH GLV+EGL +F ++  + +      HY C++DLLGR+GRL++AL LIE+M 
Sbjct: 348 LAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 407

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
            E    +WG+LLGACR+H NV + E+ A+ LLE +P+N G+YV+LSN+YA AG W+DV K
Sbjct: 408 FESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFK 467

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R LM  + + K PG +WI ++  IH F   +  HP  ++I   +  +   ++ AG++PD
Sbjct: 468 VRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPD 527

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
            +  LHDVD+E K   L  HSEKLAI FGL+ TP G  IR+MKNLR+C DCH+F K VS 
Sbjct: 528 LSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSK 587

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  R I +RD NRFH    G C+C DYW
Sbjct: 588 VYEREISLRDKNRFHLLTHGNCTCGDYW 615


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/568 (37%), Positives = 329/568 (57%), Gaps = 55/568 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I++ +  R +++ RQVHA+++       + +  +L+ +Y    AL DA  + + M ER  
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+ G+S+    +   + F + +R G   + YTL  V+ +C   + I  G+ +H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFL 237
           ++K+  +   FV ++L+DMYAK + I +AR++FD +P RD+V+ T +I      G ++  
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 238 LD------------------------------------------------VILGTAVIDM 249
           LD                                                V L  ++IDM
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCG +  +R +FD M +++V+SW+AM+  YG HG G + + LF   L   V P+ +T 
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTL 315

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           +++L  CSH GLV+EGL +F ++  + +      HY C++DLLGR+GRL++AL LIE+M 
Sbjct: 316 LAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 375

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
            E    +WG+LLGACR+H NV + E+ A+ LLE +P+N G+YV+LSN+YA AG W+DV K
Sbjct: 376 FESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFK 435

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R LM  + + K PG +WI ++  IH F   +  HP  ++I   +  +   ++ AG++PD
Sbjct: 436 VRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPD 495

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
            +  LHDVD+E K   L  HSEKLAI FGL+ TP G  IR+MKNLR+C DCH+F K VS 
Sbjct: 496 LSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSK 555

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  R I +RD NRFH    G C+C DYW
Sbjct: 556 VYEREISLRDKNRFHLLTHGNCTCGDYW 583


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/555 (38%), Positives = 320/555 (57%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   +    + +  V+  L+  Y+ ++ + +A  LF G    D V+W+ M+ G+++ 
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQS 502

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D     E F    + G + D +TL  V++ C     I  G+ +H   +KSG D+D +V 
Sbjct: 503 HDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 562

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
           + ++DMY KC  +  A+  FD +P  D V WT +I                         
Sbjct: 563 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVL 622

Query: 233 --------------------------ANKFLL----DVILGTAVIDMYAKCGSIDSAREI 262
                                     AN   L    D  +GT+++DMYAKCGSID A  +
Sbjct: 623 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCL 682

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F R+   N+ +W+AM+     HG+GK+AL LF  M S  + P+++TF+ +L ACSH+GLV
Sbjct: 683 FKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLV 742

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            E  +   SM  D+ ++P+++HY+C+ D LGRAG + EA  LI+SMS+E    ++  LL 
Sbjct: 743 SEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLA 802

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+  + +  +  A  LLE +P +   YVLLSN+YA A +W ++   R +M   ++KK 
Sbjct: 803 ACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKD 862

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG++WIEV+NKIH F V D ++PQ+E IY+ +  +   ++  GY+P+T+F L DV+EE K
Sbjct: 863 PGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEK 922

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              LY HSEKLA+AFGL++TP  T IR++KNLRVCGDCH+ +K++S +  R I++RDANR
Sbjct: 923 ERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANR 982

Query: 563 FHHFEGGACSCRDYW 577
           FH F+ G CSC DYW
Sbjct: 983 FHRFKDGICSCGDYW 997



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 161/363 (44%), Gaps = 64/363 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH   +  G    L V+N L+ +Y   + +  A  +FN M ERD +SW+ ++ G ++ 
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD-IVMGRLIHDIVLKSGLDIDQFV 195
              +     F + +RCG++ D YT+  V++A     + + + + IH   +K+    D FV
Sbjct: 402 DLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFV 461

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------------------- 232
             AL+D Y++ + + +A  LF +    DLV W  M+                        
Sbjct: 462 STALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGE 520

Query: 233 -ANKFLLDVILGT------------------------------AVIDMYAKCGSIDSARE 261
            ++ F L  +L T                               ++DMY KCG + +A+ 
Sbjct: 521 RSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQF 580

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            FD +   + ++W+ +I+    +G+ ++AL +F  M    VLP+  T  +L  A S    
Sbjct: 581 AFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTA 640

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA---LKLIESMSVEKDEGLWG 378
           +E+G ++ ++         D    T +VD+  + G +D+A    K IE M++      W 
Sbjct: 641 LEQGRQIHANAL-KLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA----WN 695

Query: 379 ALL 381
           A+L
Sbjct: 696 AML 698



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 124/281 (44%), Gaps = 33/281 (11%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F+   +S  ++   +  HA+I+A        + N L+ +Y+   +LT A  +F+ M ERD
Sbjct: 52  FLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERD 111

Query: 123 SVSWSVMVGGFSK-----VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
            VSW+ ++  +++     V +    F  FR   +  +     TL  +++ C     +   
Sbjct: 112 LVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCAS 171

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
              H    K GLD D FV  ALV++Y K   + + R LF++MP RD+V W +M+ A    
Sbjct: 172 ESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKA---Y 228

Query: 238 LDVILGTAVIDMY-------------------------AKCGSIDSAREIFDRMRQKNVI 272
           L++      ID+                          ++ G + S     D      +I
Sbjct: 229 LEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEII 288

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           S + +++ Y + GQ    L  F  M+ S +  +++TF+ +L
Sbjct: 289 SRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVL 329



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 19/149 (12%)

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG-----KKALDLFPMMLSS 300
           +I MY+KCGS+  AR +FD+M +++++SW++++AAY    +G     K+A  LF ++   
Sbjct: 87  LISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQD 146

Query: 301 RVLPNRITFVSLLYACSHTGLV--EEGLRLFSSM----WDDFAVRPDVKHYTCMVDLLGR 354
            V  +R+T   +L  C H+G V   E    ++       DDF           +V++  +
Sbjct: 147 VVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVA-------GALVNIYLK 199

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGA 383
            G++ E   L E M   +D  LW  +L A
Sbjct: 200 FGKVKEGRVLFEEMPY-RDVVLWNLMLKA 227



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/320 (19%), Positives = 127/320 (39%), Gaps = 66/320 (20%)

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +S + ++ G+     +    + F + +   ++ D  T   V+        + +G+ +H +
Sbjct: 288 ISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCM 347

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
            LK GLD+   V  +L++MY K + I  AR +F+ M  RDL++W  +I            
Sbjct: 348 ALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEA 407

Query: 234 --------------NKFLLDVILGTA----------------------VIDMYAKCGSID 257
                         + + +  +L  A                      V D +     ID
Sbjct: 408 VCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALID 467

Query: 258 S---------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           +         A  +F R    ++++W+AM++ Y     G K L+LF +M       +  T
Sbjct: 468 AYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFT 526

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKL 364
             ++L  C     + +G ++ +     +A++     D+   + ++D+  + G +  A   
Sbjct: 527 LATVLKTCGFLFAINQGKQVHA-----YAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFA 581

Query: 365 IESMSVEKDEGLWGALLGAC 384
            +S+ V  D+  W  L+  C
Sbjct: 582 FDSIPV-PDDVAWTTLISGC 600


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 325/557 (58%), Gaps = 37/557 (6%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD    IS L+ C N   +   + VH+  +       +  +N LL +Y+    L  A  +
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M ER+ VSW+ M+ G+++           ++  + G++LD      ++ AC     +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSL 368

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +HD +  + ++ + FVC AL+DMY KC  +D A  +F  M  +D+++W  MIG  
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGEL 428

Query: 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                           N +  D  +  A++D+Y KCG +  AR 
Sbjct: 429 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD +  K+++SW+ MI+ YG HG G +A+  F  M  + + P+ ++F+S+LYACSH+GL
Sbjct: 489 LFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E+G R F  M +DF + P ++HY CMVDLL R G L +A + IE++ +  D  +WGALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALL 608

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
             CRI+ +++LAE  A+ + E +P+N G+YVLL+N+YA A +W++V ++R+ + ++ L+K
Sbjct: 609 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRK 668

Query: 442 IPGWTWIEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
            PG +WIE++ K++ F  G +S+HP S++I  +L  +  K++  GY P T + L + DE 
Sbjct: 669 NPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 728

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLA+AFGL+A P    +R+ KNLRVCGDCH   K +S  TRR I++RD+
Sbjct: 729 QKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSCR +W
Sbjct: 789 NRFHHFKNGYCSCRGFW 805



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 123/234 (52%), Gaps = 8/234 (3%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           +L++ T   V++ C   K +  G+ +H I+  + + +D+ +   LV +YA C  + + R+
Sbjct: 96  ELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRR 155

Query: 215 LFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +FD M  +++  W  M+        F   + L   +++   +    +SA E+FD++  ++
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VISW++MI+ Y  +G  ++ L+++  M+   +  +  T +S+L  C+++G +  G  + S
Sbjct: 216 VISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 331 -SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            ++   F  R  +     ++D+  + G LD AL++ E M  E++   W +++  
Sbjct: 276 LAIKSTFERR--INFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 77/331 (23%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + +RD +SW+ M+ G+          E +++ +  G+ +D  T+  V+  C +
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H + +KS  +        L+DMY+KC  +D A ++F++M  R++V+WT M
Sbjct: 264 SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 231 I----------GANKFL---------LDVILGT--------------------------- 244
           I          GA + L         LDV+  T                           
Sbjct: 324 IAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 245 --------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                   A++DMY KCGS+D A  +F  M  K++ISW+ MI                  
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIG----------------- 426

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
                + P+  T   +L AC+    +E G  +   +  +     D      +VDL  + G
Sbjct: 427 ----ELKPDSRTMACILPACASLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCG 481

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            L  A +L+  M   KD   W  ++    +H
Sbjct: 482 VLGLA-RLLFDMIPSKDLVSWTVMISGYGMH 511


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/585 (36%), Positives = 338/585 (57%), Gaps = 59/585 (10%)

Query: 49  GPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           GP+ +F         ++  ++ R + + ++VHA ++    L  + ++ +L+ +Y   + L
Sbjct: 5   GPEIKFD---GYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECL 61

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
             A  +F+ M+ER+ VSW+ M+ G+S+          F + +R   + + +T   V+ +C
Sbjct: 62  GCARHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSC 121

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
                  +GR IH  + K   +   FV ++L+DMYAK   I +AR +F+ +P RD+V+ T
Sbjct: 122 TGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCT 181

Query: 229 VMI-GANKFLLD------------------------------------------------ 239
            +I G  +  LD                                                
Sbjct: 182 AIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRC 241

Query: 240 -----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                V+L  ++IDMY+KCG+++ AR+IF+ M  + VISW+AM+  Y  HG+G + + LF
Sbjct: 242 ELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLF 301

Query: 295 PMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRPDVKHYTCMVDLL 352
            +M   ++V P+ +TF+++L  CSH GL ++GL +F  M +    +   ++HY C++DLL
Sbjct: 302 KLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLL 361

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAGR++EA +LI+ M  E    +WG+LLGACR+H N ++ E     LLE +P+N G+YV
Sbjct: 362 GRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYV 421

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           +LSN+YA+AGRW+DV  +R+LM  + + K PG +WIE++  IH F   D +HP+ EE++ 
Sbjct: 422 ILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFL 481

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  L  K + +GY+PD +  L+DVDEE K   L  HSEKLA+AFGLI+T EG  +R++K
Sbjct: 482 KVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIK 541

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLR+C DCH+F K VS +  R + +RD NRFHH  GG CSC DYW
Sbjct: 542 NLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/644 (38%), Positives = 341/644 (52%), Gaps = 98/644 (15%)

Query: 1   MSKLKKHGFLVSISAKLRFFSSSTTAAIA-LEPHGHEQNPMNPRVPMQMGPDCQFTRSVD 59
           ++ + KH   + +S K +   S     I  L+ H H     NP  P+Q  P         
Sbjct: 31  ITHVSKHMMTMMVSTKPQLTPSLLPLTIQQLQHHPHSTLKFNP-TPLQTPP-------TS 82

Query: 60  PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           P     S L      Q +Q+HA I+            K  + +AL   L D     +G+ 
Sbjct: 83  PSQHDLSTLE-----QTKQIHAHII------------KTHFHHALQIPLND---FPSGLS 122

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
              S  W+ ++  ++K     N    + +  +   ++D++  P V++AC       +G+ 
Sbjct: 123 --PSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKE 180

Query: 180 IHDIVLKSGLDIDQFV----------CA-------------------------ALVDMYA 204
           IH  VLK GLD D FV          CA                         AL+DMYA
Sbjct: 181 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYA 240

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFL---------------- 237
           KC  +  ARQLF+ +  + +V+WT MI           G   F+                
Sbjct: 241 KCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN 300

Query: 238 -----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                +D IL TA++DMYAKCG I++A  +F     +++  W+A+I  +  HG G++ALD
Sbjct: 301 KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALD 360

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           +F  M    V PN ITF+ LL+ACSH GLV EG +LF  M   F + P ++HY CMVDLL
Sbjct: 361 IFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLL 420

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAG LDEA ++I+SM ++ +  +WGAL+ ACR+HKN  L E+AA  LLE +P+N G+ V
Sbjct: 421 GRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNV 480

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           L+SN+YA A RW D A +R  M    +KK PG + IEV   +H+F +GD +HPQ   I  
Sbjct: 481 LMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINE 540

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
           ML  +  KL  AGY+PDT+  L ++DEE K   L  HSEKLA+AFGLI+T   T IRI+K
Sbjct: 541 MLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVK 600

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           NLRVC DCH+  K +S I  RVIIVRD NRFHHF  G CSC DY
Sbjct: 601 NLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/584 (39%), Positives = 335/584 (57%), Gaps = 69/584 (11%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  ++ SC +++ +   +Q+H Q    G  +++ VA+ L+ +Y+    L DA  LF+ + 
Sbjct: 89  FPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIP 148

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI-----------RCGMQLDSYTLPFVIRAC 168
           ER+ VSW+ M+ G+ +          F+EF+             G+ +DS  L  VI AC
Sbjct: 149 ERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISAC 208

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-------KVID----------- 210
                  +   +H + +K G +    V   L+D YAKC       KV D           
Sbjct: 209 ARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWN 268

Query: 211 -------------DARQLFDQMPTRDLVTWTVMIGANKFLL------------------- 238
                        +A  LF  M  R  V +  +  +   L                    
Sbjct: 269 SLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVK 328

Query: 239 -----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                ++++GT+++DMY KCG ++ AR+ FDR+++KNV SW+ M+A YG HG GK+A+ +
Sbjct: 329 MELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKV 388

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M+   + PN ITFVS+L ACSH GL++EG   F+ M  +F V P ++HY+CMVDLLG
Sbjct: 389 FYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLG 448

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           RAG L EA  LI+ M V+ D  +WG+LLGACRIHKNV+L E++A+ L +  P N G+YVL
Sbjct: 449 RAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVL 508

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           LSN+YA+AGRW DV ++R LM    L K PG++ +E + ++H F VGD  HPQ E+IY  
Sbjct: 509 LSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEY 568

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           L  L+ KL+  GY+P+    L+DVD E K   L  HSEKLA+AFG++ +  G+ I+I+KN
Sbjct: 569 LDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKN 628

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LR+CGDCH  IK +S I  R I++RD+ RFHHF+ G CSC DYW
Sbjct: 629 LRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 113 ALFNGMKERDSV-SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           ++F    ++ SV SW+ ++  F++  D +     F    +  +  +  T P  I++C   
Sbjct: 40  SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            D+  G+ IH      G   D FV +AL+DMY+KC  ++DAR+LFD++P R++V+WT MI
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 232 GA 233
             
Sbjct: 160 SG 161



 Score = 43.1 bits (100), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%)

Query: 260 REIFDRMRQK-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           R +F +   K +V SW+++IA +   G   +AL  F  M    + PNR TF   + +CS 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
              +  G ++    +  F    D+   + ++D+  + G L++A KL + +  E++   W 
Sbjct: 99  LYDLCAGKQIHQQAF-VFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIP-ERNVVSWT 156

Query: 379 ALLGA 383
           +++  
Sbjct: 157 SMISG 161


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/582 (37%), Positives = 336/582 (57%), Gaps = 63/582 (10%)

Query: 58  VDPKFFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           V  +F ++ L+S     Q     +++H+ ++  G + +L V   L+ +YA    + +A  
Sbjct: 259 VPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARK 318

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF----IRCGMQLDSYTLPFVIRACR 169
           +F+GM+E + +SW+ +V G+ +        E  R F    ++ G+  + +T   V++AC 
Sbjct: 319 VFDGMREHNVMSWTALVNGYVRGGGGYE-REAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---------------------KV 208
              D   G  +H   +K GL     V   LV +YAK                       V
Sbjct: 378 SLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETV 437

Query: 209 IDDAR-QLFDQMPTRDLVTWTVMIGAN--------------------------------K 235
           +DD   + F+    +DL      +G+                                  
Sbjct: 438 VDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIG 497

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D+ +  A+I MY+KCG+ ++A ++F+ M   NVI+W+++I  +  HG   KAL+LF 
Sbjct: 498 FRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFY 557

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            ML + V PN +T++++L ACSH GL++E  + F+SM D+  + P ++HY CMVDLLGR+
Sbjct: 558 NMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRS 617

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G L EA++ I SM  + D  +W   LG+CR+H+N  L E AAK +LER+P +P  Y+LLS
Sbjct: 618 GLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLS 677

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA  GRW+DVA IR  M ++++ K  G +WIEVEN++H+F VGD+ HP++++IY  L 
Sbjct: 678 NLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLD 737

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            L+ K++  GY+P+T+F LHDV++E K   L+ HSEKLA+AF LI+TP    IR+ KNLR
Sbjct: 738 ELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLR 797

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VCGDCH+ IK++S ++ R I+VRDANRFHH + G CSC DYW
Sbjct: 798 VCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 148/330 (44%), Gaps = 72/330 (21%)

Query: 59  DPKFFISSLL--SC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           + K   SSLL   C   +N    + +H ++       + ++ N L+ +Y+       A +
Sbjct: 49  NNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFS 108

Query: 114 LFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRD 170
           +F  M+  +RD VS+S ++  F+   + +   E F + + + G+  + Y    VIRAC  
Sbjct: 109 IFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLK 168

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAA--LVDMYAK-C---------KVIDDARQ---- 214
                 G  +   VLK+G   D  VC    L+DM+ K C         KV D  R+    
Sbjct: 169 GGFFKTGLCLFGFVLKTGY-FDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVV 227

Query: 215 --------------------LFDQM-------PTRDLVTWTVMIGAN-KFL--------- 237
                               LF +M       P R  +T  + + A  +FL         
Sbjct: 228 TWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSW 287

Query: 238 -------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY--GYHGQGK 288
                  LD+ +G +++DMYAKCG +  AR++FD MR+ NV+SW+A++  Y  G  G  +
Sbjct: 288 VIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYER 347

Query: 289 KALDLFP-MMLSSRVLPNRITFVSLLYACS 317
           +A+ +F  M+L   V PN  TF  +L AC+
Sbjct: 348 EAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 121/290 (41%), Gaps = 72/290 (24%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +++ C   K+  +G+L+H  +  S L +D  +  +L+ +Y+K      A  +F  M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 220 PT--RDLVTWTVMIGA-------------------------NKF---------------- 236
               RD+V+++ +I                           N++                
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 237 ----LLDVILGTAVIDMYAKCG--------------SIDSAREIFDRMRQKNVISWSAMI 278
               L   +L T   D +   G               ++SAR++FD+MR+KNV++W+ MI
Sbjct: 174 TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 279 AAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
                +G   +A+DLF  M++SS  +P+R T   L+  C+    +  G  L S     + 
Sbjct: 234 TRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHS-----WV 288

Query: 338 VRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +R  +    C    +VD+  + G + EA K+ + M  E +   W AL+  
Sbjct: 289 IRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMR-EHNVMSWTALVNG 337



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 18/211 (8%)

Query: 51  DCQFTRSVDPKFFISSLLS----CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           + ++  S    F  +SLLS       I +  Q+HA +V  G  T+L V N L+ +Y+   
Sbjct: 457 EVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCG 516

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
               A  +FN M++ + ++W+ ++ GF+K        E F   +  G++ +  T   V+ 
Sbjct: 517 NKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLS 576

Query: 167 ACRDR-------KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           AC          K     R  H IV +    ++ + C  +VD+  +  ++ +A +  + M
Sbjct: 577 ACSHVGLIDEAWKHFTSMRDNHGIVPR----MEHYAC--MVDLLGRSGLLSEAIEFINSM 630

Query: 220 P-TRDLVTWTVMIGANKFLLDVILGTAVIDM 249
           P   D + W   +G+ +   +  LG     M
Sbjct: 631 PFDADALVWRTFLGSCRVHRNTKLGEHAAKM 661


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 327/581 (56%), Gaps = 57/581 (9%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLI-VANKLLYIYALHKALT 109
           F   +D    ++  ++C NI  +   + +H+  +   TL   +   N LL +Y+    L 
Sbjct: 346 FGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLN 405

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  +F  M E+  VSW+ M+ G+ +        + F E    G+  D Y +  ++ AC 
Sbjct: 406 SAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACA 465

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
              ++  G+++HD + ++ L+ + FV  AL DMYAKC  + DA  +F  M  +D+++W  
Sbjct: 466 INGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNT 525

Query: 230 MIGA-----------------------------------------------------NKF 236
           MIG                                                      N +
Sbjct: 526 MIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGY 585

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
             D  +  AV+DMY KCG +  AR +FD +  K+++SW+ MIA YG HG G +A++ F  
Sbjct: 586 SEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQ 645

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M  + + P+ ++F+S+LYACSH+GL++EG ++F+ M  +  + P+++HY CMVDLL R G
Sbjct: 646 MRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTG 705

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            L +A K I++M ++ D  +WGALL  CRIH +V LAE  A+ + E +P+N G+YVLL+N
Sbjct: 706 NLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLAN 765

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA A +W++V K+R  + +R LKK PG +WIE++ KI+ F  GD + PQ+++I  +L  
Sbjct: 766 IYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKR 825

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L  K++  GY P T + L + DE  K   L  HSEKLA+AFG++  P G  IR+ KNLRV
Sbjct: 826 LRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRV 885

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCH   K +S    R II+RD++RFHHF+ G+CSCR YW
Sbjct: 886 CGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 163/368 (44%), Gaps = 57/368 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           ++I   R+V + I + G + + I+  KL+++Y     L +   +F+ + E     W++M+
Sbjct: 164 KSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMI 223

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             +S   ++      F++ +  G++ +SYT   +++       +  GR +H ++ K G +
Sbjct: 224 SEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFN 283

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFL-- 237
               V  +L+  Y   + +  A++LFD++  RD+++W  MI           G   F+  
Sbjct: 284 SYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKM 343

Query: 238 ----LDVILGTAV--------------------------------------IDMYAKCGS 255
               +D+ L T V                                      +DMY+KCG 
Sbjct: 344 LVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGD 403

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           ++SA  +F+RM +K V+SW++MI  Y   G    A+ LF  M S  V+P+     S+L A
Sbjct: 404 LNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNA 463

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+  G ++ G ++      +  +  +      + D+  + G + +A  +   M  +KD  
Sbjct: 464 CAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVI 521

Query: 376 LWGALLGA 383
            W  ++G 
Sbjct: 522 SWNTMIGG 529



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 124/303 (40%), Gaps = 57/303 (18%)

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           F +V D  N  E           L +Y    +++ C +RK I  GR +  I+  SG+ ID
Sbjct: 127 FCEVGDLKNAMELLCSSQNSNFDLGAYC--SILQLCAERKSIRDGRRVRSIIESSGVMID 184

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------- 232
             +   LV MY KC  + + R +FD++    +  W +MI                     
Sbjct: 185 GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLE 244

Query: 233 ----ANKFLLDVIL-----------GTAVIDMYAKCG-------------------SIDS 258
                N +    IL           G  V  +  K G                    +  
Sbjct: 245 LGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRC 304

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A+++FD +  ++VISW++MI+ Y  +G   + +++F  ML   V  +  T V++  AC++
Sbjct: 305 AQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACAN 364

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G +  G  L S       +  +V+    ++D+  + G L+ A+++ E M  EK    W 
Sbjct: 365 IGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWT 423

Query: 379 ALL 381
           +++
Sbjct: 424 SMI 426


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/575 (37%), Positives = 325/575 (56%), Gaps = 58/575 (10%)

Query: 61  KFFISSLLS-CRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F +SSL+S   N+  +R    +H  I   G  ++ +V+N L+ +Y   + + D + +F 
Sbjct: 152 QFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFE 211

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M   D VSW+ ++ GF            F + +  G + + +T   V+R+C    D   
Sbjct: 212 AMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEF 271

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G+ +H  ++K+  D D FV  ALVDMYAK + ++DA   FD++  RD+ +WTV+I     
Sbjct: 272 GKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQ 331

Query: 234 ---------------------NKFLL------------------------------DVIL 242
                                N++ L                              D+ +
Sbjct: 332 TDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFV 391

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G+A++D+Y KCG ++ A  IF  +  ++++SW+ +I+ Y  HGQG+KAL+ F MMLS  +
Sbjct: 392 GSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGI 451

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           +P+  TF+ +L ACS  GLVEEG + F SM   + + P ++HY CMVD+LGRAG+ +E  
Sbjct: 452 MPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVK 511

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             IE M++     +W  +LGAC++H NVD  E AAK L E +P     Y+LLSN++A+ G
Sbjct: 512 IFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKG 571

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW DV  IR LMT R +KK PG +W+EV+ ++H F   D +HP+  EIY  L  L + L 
Sbjct: 572 RWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLM 631

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY+P T   LH+V  + K+ +LY HSE+LA++F L++T     IRI KNLR+C DCH 
Sbjct: 632 SIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHD 691

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           F+K +S IT + I+VRD  RFHHF+ G CSC+D W
Sbjct: 692 FMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 186/467 (39%), Gaps = 107/467 (22%)

Query: 61  KFFISSLL-SCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           KF +S++L  C N   +R+   +HA  +  G   +  +   L+ +Y+    + DA  +F 
Sbjct: 51  KFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFT 110

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            ++  D V+WS M+ G  +        E F    R G + + +TL  ++    +  D+  
Sbjct: 111 KIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRY 170

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G+ IH  + K G + D  V   L+ MY K + ++D  ++F+ M   DLV+W  ++     
Sbjct: 171 GQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYD 230

Query: 234 ---------------------NKF-----------LLDV-------------------IL 242
                                N F           LLD                     +
Sbjct: 231 SQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFV 290

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTA++DMYAK   ++ A   FDR+  +++ SW+ +I+ Y    Q +KA+  F  M    +
Sbjct: 291 GTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGI 350

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY------TCMVDLLGRAG 356
            PN  T  S L  CSH   +E G +L        AV     H+      + +VDL G+ G
Sbjct: 351 KPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCG 403

Query: 357 RLD----------------------------------EALKLIESMSVEKDEGLWGALLG 382
            ++                                  EA +++ S  +  DE  +  +L 
Sbjct: 404 CMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLS 463

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDV 427
           AC     V+  +    S+ +    NP   HY  + ++   AG++ +V
Sbjct: 464 ACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEV 510



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 61/361 (16%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF GM E++ VSW+ ++ G++++ D     + F +   C  +   +TL  V++ C +
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+++H + L+SG +ID+F+  +LVDMY+KC  + DA ++F ++   D+V W+ M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 231 I----------------------GA--NKFLLDVILGTA--------------------- 245
           I                      GA  N+F L  ++ TA                     
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 246 ---------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                    +I MY K   ++   ++F+ M   +++SW+A+++ +       +   +F  
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML     PN  TF+S+L +CS     E G ++ + +  + +   D    T +VD+  +A 
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG-TALVDMYAKAR 302

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLL 414
            L++A    + + V +D   W  ++     +   D AE A K    ++R+   P  Y L 
Sbjct: 303 CLEDAGVAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQREGIKPNEYTLA 358

Query: 415 S 415
           S
Sbjct: 359 S 359



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 5/163 (3%)

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           ++ A  +F  M +KN +SW+A++  Y   G GKK L LF  M       ++ T  ++L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C++TG + EG ++  ++        D      +VD+  + G + +ALK+   +    D  
Sbjct: 61  CANTGSLREG-KVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDVV 118

Query: 376 LWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
            W A++ G  +     + AE+    L+ R+   P  + L S V
Sbjct: 119 AWSAMITGLDQQGHGQEAAELF--HLMRRKGARPNQFTLSSLV 159


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 332/559 (59%), Gaps = 58/559 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           RQ H  ++  G   ++ V   L+ +YA      ++ DA  +F+ M   + +SW+ ++ G+
Sbjct: 165 RQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGY 224

Query: 134 SKVADFI-NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            +         E F E ++  ++ + +T   V++AC +  DI +G  ++ +V+K  L   
Sbjct: 225 VQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASI 284

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------------- 231
             V  +L+ MY++C  +++AR+ FD +  ++LV++  ++                     
Sbjct: 285 NCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEG 344

Query: 232 ---GANKFLLDVILG------------------------------TAVIDMYAKCGSIDS 258
              G N F    +L                                A+I MY++CG+I++
Sbjct: 345 AGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEA 404

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A ++F+ M   NVISW++MI  +  HG   +AL+ F  ML + V PN +T++++L ACSH
Sbjct: 405 AFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSH 464

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GL+ EGL+ F SM  +  + P ++HY C+VDLLGR+G L+EA++L+ SM  + D  +  
Sbjct: 465 VGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLR 524

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
             LGACR+H N+DL + AA+ +LE+ P +P  Y+LLSN++A+AG+W++VA+IR  M  R 
Sbjct: 525 TFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERN 584

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           L K  G +WIEVENK+H+F VGD++HPQ++EIY  L  L+ K++  GYIP T+F LHDV+
Sbjct: 585 LTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVE 644

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           EE K   L+ HSEK+A+A+G I+T     IR+ KNLRVCGDCH+  K+ S + R+ I++R
Sbjct: 645 EEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLR 704

Query: 559 DANRFHHFEGGACSCRDYW 577
           DANRFHHF+ G CSC DYW
Sbjct: 705 DANRFHHFKDGTCSCNDYW 723



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 153/319 (47%), Gaps = 59/319 (18%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A+ +F+ M +R+ V+W++M+  F ++    +  + F + +  G   D +TL  V+ A
Sbjct: 95  LESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDL 224
           C +   + +GR  H +V+KSGLD+D  V  +LVDMYAKC     +DDAR++FD+MP  ++
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 225 VTWTVMIGA-------------------------NKFLLDVIL----------------- 242
           ++WT +I                           N F    +L                 
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        G ++I MY++CG++++AR+ FD + +KN++S++ ++ AY      ++
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A +LF  +  +    N  TF SLL   S  G + +G ++ S +      + ++     ++
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICNALI 393

Query: 350 DLLGRAGRLDEALKLIESM 368
            +  R G ++ A ++   M
Sbjct: 394 SMYSRCGNIEAAFQVFNEM 412



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 69/312 (22%)

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            +RD VSWS ++  ++           F + + CG   + Y    V RAC ++++I +G+
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 179 LIHDIVLKSG-LDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMI----- 231
           +I   +LK+G  + D  V  AL+DM+ K    ++ A ++FD+MP R++VTWT+MI     
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 232 -----GANKFLLDVIL-------------------------------------------- 242
                 A    LD++L                                            
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 243 GTAVIDMYAKC---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ-GKKALDLFPMML 298
           G +++DMYAKC   GS+D AR++FDRM   NV+SW+A+I  Y   G   ++A++LF  M+
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGR 354
             +V PN  TF S+L AC++   +  G ++++       V+  +    C    ++ +  R
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYA-----LVVKMRLASINCVGNSLISMYSR 297

Query: 355 AGRLDEALKLIE 366
            G ++ A K  +
Sbjct: 298 CGNMENARKAFD 309



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
            +++++SWSA+I+ Y  + +  +A+  F  ML     PN   F  +  ACS+   +  G 
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRA-GRLDEALKLIESM 368
            +F  +        DV     ++D+  +  G L+ A K+ + M
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRM 105


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 321/526 (61%), Gaps = 34/526 (6%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G   NL V N L+ +Y     L +A  +F+ M  +D VSW+ MV G++    
Sbjct: 141 IHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMR 200

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACR-----------------DRKDIVMGRLIH 181
           F +  E  RE    G + D  T+  ++ A                   +RK+++   ++ 
Sbjct: 201 FDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMI 260

Query: 182 DIVLKSGLDIDQFVCAALVDMY---AKCKVIDDARQLFDQMPTRDLVTWTVM-------I 231
            + +K+ L          VD+Y    KC+V  DA      +P    ++  ++       +
Sbjct: 261 RVYMKNSLPTQA------VDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYV 314

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
              K   +++L  ++IDMYA+CG +D A+ +FDRM+ ++V SW+++I+AYG  GQG  A+
Sbjct: 315 EKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAV 374

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            LF  ML+S   P+ I FV++L ACSH+GL++EG   F  M DD+ + P ++HY C+VDL
Sbjct: 375 ALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDL 434

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LGRAGR+DEA  +I+ M +E +E +W  LL +CR+  N+D+  +AA +LL+  P+  G+Y
Sbjct: 435 LGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYY 494

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           VLLSN+YA AGRW++V +IR +M R++++K PG + +E+ N++H F  GD++HPQS+EIY
Sbjct: 495 VLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIY 554

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  L  K++  GY+P+T+  LHDV+EE K G+L  HSEKLAI F L+ T E   IRI 
Sbjct: 555 EELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRIT 613

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLRVCGDCH   K +S I  R IIVRD NRFHHF+ G CSC DYW
Sbjct: 614 KNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 163/333 (48%), Gaps = 23/333 (6%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           +I  ++++H  I    +  N  +  KL+  YA          +F+ M +R+ V ++VM+ 
Sbjct: 33  DIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIR 92

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +     + +    FRE +  G + D+YT P V++AC   +++  G LIH  VLK GLD 
Sbjct: 93  SYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDF 152

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDVIL------- 242
           + FV   L+ MY KC  + +AR++FD+M  +D+V+W  M+   A+    D  L       
Sbjct: 153 NLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREME 212

Query: 243 -------GTAVIDMYAKCGSIDS-----AREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                  G  +  +     +  S       +IF  + +KN+ISW+ MI  Y  +    +A
Sbjct: 213 DYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQA 272

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           +DL+  M   RV P+ ITF S+L AC     +  G R+   + +   + P++     ++D
Sbjct: 273 VDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYV-EKKKLCPNLLLENSLID 331

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +  R G LD+A ++ + M   +D   W +L+ A
Sbjct: 332 MYARCGCLDDAKRVFDRMKF-RDVASWTSLISA 363



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 97/242 (40%), Gaps = 35/242 (14%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F S L +C ++  +   R++H  +       NL++ N L+ +YA    L DA  +F
Sbjct: 287 DAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVF 346

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + MK RD  SW+ ++  +       N    F E +  G   DS     ++ AC     + 
Sbjct: 347 DRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLD 406

Query: 176 MGRLIHDIVLKSGLD-------IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTW 227
            GR    I  K   D       I+ + C  LVD+  +   +D+A  +  QMP   +   W
Sbjct: 407 EGR----IYFKQMTDDYRITPRIEHYAC--LVDLLGRAGRVDEAYNIIKQMPIEPNERVW 460

Query: 228 TVMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQK 269
             ++ + +   ++ +G    D                  +YAK G      EI   M++K
Sbjct: 461 ATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRK 520

Query: 270 NV 271
            +
Sbjct: 521 KI 522


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/568 (38%), Positives = 324/568 (57%), Gaps = 57/568 (10%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C     +R   ++H+ +V  G   ++ V   LL +Y       DA  +F+ + +++ 
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ ++ G+     F      F++ +  G++ DS++L  V+ AC    D   G  I   
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------- 230
           +  SG+  + FV  +L+DMY KC  ++ A  +F  MP +D+V+W+ M             
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 231 ----------------------------IGA-------------NKFLLDVILGTAVIDM 249
                                       +GA             N+FL + +LGTA+IDM
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCGS+  A EIF  M++K+ + W+AM+     +G  K    LF ++    + P+  TF
Sbjct: 361 YSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTF 420

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           + LL  C+H G V EG + F++M   F++ P ++HY CMVDLLGRAG L+EA +LI +M 
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP 480

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           ++ +  +WGALLG C++HK+  LAE   K L+E +P N G+YV LSN+Y+   RW++  K
Sbjct: 481 MKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEK 540

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           IR  M  ++++KI   +WIE++  +H+F VGD +H  SE+IY  L  L  +L+  G++P 
Sbjct: 541 IRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPT 600

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
           T F L D++EE K   L  HSEKLA+AFGLIA+P    IR++KNLRVCGDCH  IK +S 
Sbjct: 601 TEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISK 660

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IT+R II+RD NRFH F  G+CSCRDYW
Sbjct: 661 ITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 209/428 (48%), Gaps = 78/428 (18%)

Query: 41  NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIV-----AGGTLTNLIVA 95
           NP  P+       F+++++ K ++S+ L+  N  Q++ +HA+++         L NLI+ 
Sbjct: 6   NPSSPV-------FSKALEIKNYLSNGLNFFN--QLKHIHARLLRLHLDQDNYLLNLILC 56

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
             L +    +  L     +F+ +KE +   W+ M+ G      F +    +      G  
Sbjct: 57  CALDFGSTNYSKL-----VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFL 111

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            +++T+PFV++AC  + D+ +G  IH +++K+G D D FV  +L+ +Y KC   DDA ++
Sbjct: 112 PNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKV 171

Query: 216 FDQMPTRDLVTWTVM-------------IGANKFLLD----------------------- 239
           FD +P +++V+WT +             IGA K LL+                       
Sbjct: 172 FDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDC 231

Query: 240 ------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                             V + T+++DMY KCG+++ A  IF  M +K+++SWS MI  Y
Sbjct: 232 TSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGY 291

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRP 340
            ++G  ++ALDLF  M S  + P+  T V +L AC+  G ++ G+   S M  ++F   P
Sbjct: 292 AFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNP 351

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            +   T ++D+  + G + +A ++  +M  +KD  +W A++    ++ +   A  +  SL
Sbjct: 352 VLG--TALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMMVGLSMNGHAK-AVFSLFSL 407

Query: 401 LERQPQNP 408
           +E+    P
Sbjct: 408 VEKHGIRP 415


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/592 (37%), Positives = 334/592 (56%), Gaps = 91/592 (15%)

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           F+++Q+HA ++   +  + +  +++  + A + + + A  +F  +   +   W+  +  F
Sbjct: 29  FELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88

Query: 134 SK---VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           ++    AD I+ F   REF    +  D YT  FV++AC    D+  G+++H  V K GL 
Sbjct: 89  AEGDSPADAISLFYRLREF---DISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQ 145

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFD-------------------------------QM 219
            + F+   +V +YA C  I  AR++FD                               +M
Sbjct: 146 SNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEM 205

Query: 220 PTRDLVTWTVMIGA------NKFLLDV-----------------------------ILG- 243
           P R++ +WT MIG       +K  +D+                             +LG 
Sbjct: 206 PERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGR 265

Query: 244 ------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                               +IDMY KCG ++ A  IFD M ++ V+SWSAMIA    HG
Sbjct: 266 RIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHG 325

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           + + AL LF  M+++ V PN +TF+ +L+ACSH G+VE+G + F+SM  D+ + P ++HY
Sbjct: 326 RAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHY 385

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            CMVDL  RAG L EA + I +M +  +  +WGALLG C++HKN+ LAE A + L +  P
Sbjct: 386 GCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDP 445

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N G+YV+LSN+YA AGRW+DVA++R LM  R +KK PGW+ I VE  ++ F  GD THP
Sbjct: 446 LNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHP 505

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
           Q+EEI++    L ++++L GY+P+T+  L D++E+ K   LY HSEKLA+ FGLI T  G
Sbjct: 506 QTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPG 565

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T IRIMKNLRVC DCH+ +K +S ++ R I+VRD NRFH F+ G+CSC DYW
Sbjct: 566 TVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 108/243 (44%), Gaps = 30/243 (12%)

Query: 64  ISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           ++ L++C ++  +   R++H      G   N+ V N L+ +Y     L DA  +F+ M+E
Sbjct: 249 VAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEE 308

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR-L 179
           R  VSWS M+ G +      +    F + I  G++ ++ T   ++ AC     +  GR  
Sbjct: 309 RTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKY 368

Query: 180 IHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKF 236
              +    G+   I+ + C  +VD++++  ++ +A +    MP   + V W  ++G  K 
Sbjct: 369 FASMTRDYGIVPRIEHYGC--MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 237 LLDVIL----------------GTAVI--DMYAKCGSIDSAREIFDRMRQKNV---ISWS 275
             ++ L                G  V+  ++YA+ G  +    +   MR + V     WS
Sbjct: 427 HKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWS 486

Query: 276 AMI 278
           +++
Sbjct: 487 SIM 489


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/568 (38%), Positives = 324/568 (57%), Gaps = 57/568 (10%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C     +R   ++H+ +V  G   ++ V   LL +Y       DA  +F+ + +++ 
Sbjct: 121 LKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ ++ G+     F      F++ +  G++ DS++L  V+ AC    D   G  I   
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------- 230
           +  SG+  + FV  +L+DMY KC  ++ A  +F  MP +D+V+W+ M             
Sbjct: 241 ISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 231 ----------------------------IGA-------------NKFLLDVILGTAVIDM 249
                                       +GA             N+FL + +LGTA+IDM
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDM 360

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCGS+  A EIF  M++K+ + W+AM+     +G  K    LF ++    + P+  TF
Sbjct: 361 YSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTF 420

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           + LL  C+H G V EG + F++M   F++ P ++HY CMVDLLGRAG L+EA +LI +M 
Sbjct: 421 IGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMP 480

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           ++ +  +WGALLG C++HK+  LAE   K L+E +P N G+YV LSN+Y+   RW++  K
Sbjct: 481 MKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEK 540

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           IR  M  ++++KI   +WIE++  +H+F VGD +H  SE+IY  L  L  +L+  G++P 
Sbjct: 541 IRSTMKEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPT 600

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
           T F L D++EE K   L  HSEKLA+AFGLIA+P    IR++KNLRVCGDCH  IK +S 
Sbjct: 601 TEFVLFDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISK 660

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IT+R II+RD NRFH F  G+CSCRDYW
Sbjct: 661 ITKREIIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 204/415 (49%), Gaps = 71/415 (17%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIRQVHAQIV-----AGGTLTNLIVANKLLYIYALHKAL 108
           F+++++ K ++S+ L+  N  Q++ +HA+++         L NLI+   L +    +  L
Sbjct: 12  FSKALEIKNYLSNGLNFFN--QLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKL 69

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
                +F+ +KE +   W+ M+ G      F +    +      G   +++T+PFV++AC
Sbjct: 70  -----VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC 124

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
             + D+ +G  IH +++K+G D D FV  +L+ +Y KC   DDA ++FD +P +++V+WT
Sbjct: 125 ARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWT 184

Query: 229 VM-------------IGANKFLLD------------------------------------ 239
            +             IGA K LL+                                    
Sbjct: 185 AIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDS 244

Query: 240 -----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                V + T+++DMY KCG+++ A  IF  M +K+++SWS MI  Y ++G  ++ALDLF
Sbjct: 245 GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLF 304

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLG 353
             M S  + P+  T V +L AC+  G ++ G+   S M  ++F   P +   T ++D+  
Sbjct: 305 FQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG--TALIDMYS 362

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           + G + +A ++  +M   KD  +W A++    ++ +   A  +  SL+E+    P
Sbjct: 363 KCGSVTQAWEIFTAMK-RKDRVVWNAMMVGLSMNGHAK-AVFSLFSLVEKHGIRP 415


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 326/570 (57%), Gaps = 56/570 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           ++  +S R I + ++VH  ++    L ++ +  +L+ +Y     L DA  +F+ M +R+ 
Sbjct: 69  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNV 128

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+  +S+          F E +R   + + +T   ++ +C        GR IH I
Sbjct: 129 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 188

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GANKFLLD--- 239
            +K   +   FV ++L+DMYAK   I DA  +F  +P RD+V  T +I G  +  LD   
Sbjct: 189 AIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEA 248

Query: 240 --------------------------------------------------VILGTAVIDM 249
                                                             V+L  ++IDM
Sbjct: 249 LKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDM 308

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRIT 308
           Y+KCG++  AR IFD M ++  ISW+AM+  Y  HG  ++ L+LF +M   ++V P+ IT
Sbjct: 309 YSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSIT 368

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           ++++L  CSH  L + GL +F +M +    + PD+ HY C+VDLLGRAGR++EA   I+ 
Sbjct: 369 YLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKK 428

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M       +WG+LLG+CR+H +V++  +  + LLE +P+N G+YV+LSN+YA+AG+W+D+
Sbjct: 429 MPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDM 488

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
             IRDLM  + + K PG +W+E++  +H F   D THP+ EE+   +  LS K +  GY+
Sbjct: 489 RNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYV 548

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PD +  L+DVDEE K   L  HSEKLA+AFGLIATPEGT IR++KNLR+C DCHSF K V
Sbjct: 549 PDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFV 608

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S +  R +I+RD NRFH+  GG CSC DYW
Sbjct: 609 SRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 64/276 (23%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++  C  ++ I  G+ +H  ++K+      ++   L+ +Y KC  + DAR +FD+MP R+
Sbjct: 68  ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127

Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
           +V+WT MI A                        N F    IL                 
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHS 187

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        G++++DMYAK G I  A  +F  + +++V++ +A+I+ Y   G  ++
Sbjct: 188 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEE 247

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY---- 345
           AL LF  +    +  N +T+ S+L A S    +  G ++ S +     +R     Y    
Sbjct: 248 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHV-----LRSGQYSYVVLL 302

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             ++D+  + G +  A ++ +SM  E+    W A+L
Sbjct: 303 NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 337


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/607 (35%), Positives = 347/607 (57%), Gaps = 91/607 (14%)

Query: 60  PKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           P+ + + + +C   R +   ++VHA   A   +  ++++N+L+++YA   +L DA  LF+
Sbjct: 63  PRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFD 122

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFRE---------------FIRCGMQLDSYTL 161
            + ++D  SW+ M+ G++ V       + F E               ++  G  +++  L
Sbjct: 123 EIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDL 182

Query: 162 PFVIRACRDRKDIVM------------------GRLIHDIVLKSGLDIDQFVCAALVDMY 203
            F +    +  +  M                  G+ IH  +++SGL++D+ V  AL+D+Y
Sbjct: 183 -FRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLY 241

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IGANKFLLD 239
            KC  +++AR +FDQM  +D+V+WT M                        +  N++   
Sbjct: 242 GKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFA 301

Query: 240 VIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQK 269
            +L                               +A++ +Y+KCG+ ++AR +F++M + 
Sbjct: 302 GVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRP 361

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +++SW+++I  Y  +GQ   AL  F  +L S   P+ ITFV +L AC+H GLV+ GL  F
Sbjct: 362 DLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYF 421

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
            S+ +   +     HY C++DLL R+GR  EA  +I++M ++ D+ LW +LLG CRIH N
Sbjct: 422 HSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGN 481

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIE 449
           ++LAE AAK+L E +P+NP  Y+ LSN+YANAG W +  K+R+ M  R + K PG +WIE
Sbjct: 482 IELAERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIE 541

Query: 450 VENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSH 509
           ++ ++H F VGD++HP+  +I+  L  LS+K++  GY+ DTNF LHDV+EE K  N++ H
Sbjct: 542 IKRQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYH 601

Query: 510 SEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGG 569
           SEKLA+AFG+I+T  GT I++ KNLR C DCH+ +K++S I +R IIVRD+NRFH F  G
Sbjct: 602 SEKLAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDG 661

Query: 570 ACSCRDY 576
           +CSC+DY
Sbjct: 662 SCSCKDY 668


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 338/571 (59%), Gaps = 57/571 (9%)

Query: 64  ISSLLSC-RNIFQIRQVHA-QIVAGGTLTNLIVANKLLY-IYALHKALTDAHALFNGMKE 120
           I+ LLSC  + F+ RQ+HA  I  G  LTN  +   L++ + +    ++ AH +F+ ++ 
Sbjct: 43  IALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQN 102

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            +  +W+ M+ G+++  + +   E +R+     ++ D++T PF+++A     D+  G  +
Sbjct: 103 PNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKV 162

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------- 232
           H I +++G +   FV   LV MYA C   + A +LF+ M  R+LVTW  +I         
Sbjct: 163 HSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRP 222

Query: 233 ----------------------------------------ANKFLLDVIL------GTAV 246
                                                   A+ +++ V L      G A+
Sbjct: 223 NEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNAL 282

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +D+YAKCGSI  A ++FD M +K+V+SW+++I     +G GK+AL+LF  +    ++P+ 
Sbjct: 283 LDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSE 342

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           ITFV +LYACSH G+V+EG   F  M +++ + P ++HY CMVDLLGRAG + +A + I+
Sbjct: 343 ITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQ 402

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           +M ++ +  +W  LLGAC IH ++ L E+A   LL+ +P++ G YVLLSN+YA+  RW D
Sbjct: 403 NMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSD 462

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           V K+R  M R  +KK PG + +E+ N++H+F +GD +HPQ+EEIY  L  +++ L+L GY
Sbjct: 463 VHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGY 522

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           +P  +  L D++EE K   L  HSEK+AIAF LI T  G  IR++KNLRVC DCH  IK 
Sbjct: 523 VPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKL 582

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S +  R I+VRD +RFHHF+ G CSC+DYW
Sbjct: 583 ISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 330/575 (57%), Gaps = 58/575 (10%)

Query: 61  KFFISSLL-SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           KF  SS+L +C  +  +R   QVHA I+  G  +N  V N L+ +YA    +  A  +F+
Sbjct: 121 KFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFD 180

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           GM ER  V+W+ M+ G++K   +    + FR+ +   ++ D  T+  V+ AC    ++ +
Sbjct: 181 GMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEI 240

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV------- 229
           G LI + ++  GL  +  +  +L+DMYAKC  +D AR+LFD+M  RD+V W+        
Sbjct: 241 GELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQ 300

Query: 230 ----------------------------------MIGA-------------NKFLLDVIL 242
                                             M+GA              K  L V L
Sbjct: 301 ADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTL 360

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GT +ID YAKCG ID + E+F  M  KNV +W+A+I     +G+GK AL+ F  ML + V
Sbjct: 361 GTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDV 420

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN +TF+ +L ACSH  LV++G  LF+SM  DF + P ++HY CMVD+LGRAG L+EA 
Sbjct: 421 KPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAY 480

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + I++M    +  +W  LL +CR HKN+++AE + + +   +P + G Y+LLSN YA  G
Sbjct: 481 QFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVG 540

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           R +D  ++R L+  + +KKIPG + IE++  +H+F   D  H  S+EI+  L  + ++++
Sbjct: 541 RVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIK 600

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY+P+T+    + +EE K  ++  HSEKLAIA+GLI T   T IRI KNLR+C DCH+
Sbjct: 601 RLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHN 660

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K +S +  R+IIVRD NRFHHF+ G CSC DYW
Sbjct: 661 ATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 70/384 (18%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL--FN 116
           +PK  I  L  C+    ++QVHA ++    L + I+   +L   AL    T  +AL  FN
Sbjct: 22  NPKSLI--LQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFN 79

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            + + +S +++VM+ G +      N    F++     +Q D +T   V++AC   K +  
Sbjct: 80  HIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALRE 139

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--N 234
           G  +H ++LKSG   ++FV   L+ MYA C  I  AR +FD MP R +V W  M+     
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199

Query: 235 KFLLDVIL--------------GTAVIDMYAKCG-------------------------- 254
             L D ++                 +I +   CG                          
Sbjct: 200 NGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259

Query: 255 ------------SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
                        +D+AR++FD M +++V++WSAMI+ Y    + K+AL+LF  M    V
Sbjct: 260 TTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV 319

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGR 357
            PN +T VS+LY+C+  G  E G       W  F ++       V   T ++D   + G 
Sbjct: 320 YPNEVTMVSVLYSCAMLGAYETG------KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGY 373

Query: 358 LDEALKLIESMSVEKDEGLWGALL 381
           +D ++++ + MS  K+   W AL+
Sbjct: 374 IDRSVEVFKEMSF-KNVFTWTALI 396


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/560 (38%), Positives = 320/560 (57%), Gaps = 54/560 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N     Q+HA  +  G  ++L V N L+ +YA   ++     +F+ M ++D VSW+ ++ 
Sbjct: 434 NTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 493

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL-- 189
           G ++        E FRE    G+ LD   +  ++ AC   K I   + IH  +++ GL  
Sbjct: 494 GHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSD 553

Query: 190 --------DI--------------------DQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
                   D+                    D     +++  Y    + ++A +LF  M  
Sbjct: 554 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 613

Query: 222 RDLVTWTVMIGA-----------------------NKFLLDVILGTAVIDMYAKCGSIDS 258
             +   ++ + +                         F+L+  L + ++DMYA+CG+++ 
Sbjct: 614 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 673

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           +R +F+ +R K+++ W++MI AYG HG G+ A+DLF  M    + P+ I FV++LYACSH
Sbjct: 674 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 733

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           +GL+ EG R   SM  ++ + P  +HY C+VDLLGRA  L+EA + ++ M VE    +W 
Sbjct: 734 SGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 793

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALLGAC+IH N +L E+AA+ LLE  P+NPG+YVL+SNVYA   RW+DV ++R  M    
Sbjct: 794 ALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASG 853

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDV 497
           LKK PG +WIEV NK+H F   D +HPQS EIY  L  ++EKL +  GY+  T F LH+ 
Sbjct: 854 LKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNA 913

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
            EE KV  LY HSE+LAIA+G++ TPEG  +RI KNLRVCGDCH+F K +S    R +++
Sbjct: 914 KEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVM 973

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RDANRFHHF+GG CSC D W
Sbjct: 974 RDANRFHHFKGGVCSCGDVW 993



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 194/414 (46%), Gaps = 61/414 (14%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+++L +C +   I+Q   +HA ++      N+ VAN L+ +YA    + +A  +F  M 
Sbjct: 321 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 380

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           + D++SW+ M+ GF +   +    + + E    G + D   +  +I A     + + G  
Sbjct: 381 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ 440

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN----- 234
           IH   +K+GLD D  V  +LVDMYAK   +     +FD+MP +D+V+WT +I  +     
Sbjct: 441 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500

Query: 235 ------------------------------------------------KFLLDVILGTAV 246
                                                           K L D++L   +
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGI 560

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +D+Y +CG++D A  +F+ +  K+V+SW++MI+ Y ++G   +AL+LF +M  + V P+ 
Sbjct: 561 VDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDS 620

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           I+ VS+L A +    +++G  +   +    F +   +   + +VD+  R G L+++  + 
Sbjct: 621 ISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--STLVDMYARCGTLEKSRNVF 678

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             +   KD  LW +++ A  +H     A +     +E +   P H   ++ +YA
Sbjct: 679 NFIR-NKDLVLWTSMINAYGMH-GCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 730



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 51/309 (16%)

Query: 77  RQVHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +QVHA ++    L N + ++ +L+++Y     L DA  LF+GM  +   +W+ M+G +  
Sbjct: 134 QQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVT 193

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             + +   E +RE    G+ LD+ T P +++AC   KD   G  +H + +K G     FV
Sbjct: 194 NGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFV 253

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
             ++V MY KC  ++ ARQLFD+MP + D+V+W  MI                       
Sbjct: 254 ANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMI----------------------- 290

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                                   +AY  +GQ  +AL LF  M  + + PN  TFV+ L 
Sbjct: 291 ------------------------SAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 326

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC  +  +++G+ + +++    +   +V     ++ +  R G++ EA  +  +M  + D 
Sbjct: 327 ACEDSSFIKQGMFIHATVLKS-SYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDT 384

Query: 375 GLWGALLGA 383
             W ++L  
Sbjct: 385 ISWNSMLSG 393


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 331/606 (54%), Gaps = 91/606 (15%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA--LFNGMKE 120
            +S L  C +I Q++QVHA I   G      V  KLL          D +   +F  ++ 
Sbjct: 42  LVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            +   W+ ++ G++    F+     +    R G+   S+T   +++AC    D+ +GR +
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQV 161

Query: 181 H-DIVLKSGLDIDQFVCAALVDMYAKC-------KVIDD--------------------- 211
           H   +L  G   D +V   L+DMY KC       +V D+                     
Sbjct: 162 HTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221

Query: 212 ---ARQLFDQMPTRDLVTWTVMI------------------------------------- 231
              A +LFD +P +D+V WT M+                                     
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281

Query: 232 ----GANKF---------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
               GA K+                 +V++G+A+IDMYAKCGS++ A ++F+RM ++NV 
Sbjct: 282 CAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVY 341

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           S+S+MI  +  HG    A++LF  ML + + PNR+TF+ +L ACSH G+VE+G +LF+ M
Sbjct: 342 SYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMM 401

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
            +   V P   HY CMVDLLGRAGRL+EAL L++ M +    G+WGALLGACRIH N D+
Sbjct: 402 EECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDM 461

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           A++AA  L E +P   G+Y+LLSN+YA+AGRW DV+K+R LM  + LKK PG +W+E + 
Sbjct: 462 AQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKK 521

Query: 453 K-IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
             IH+F  GD +HP+S EI + L  L ++L+  GY P+ +   +D+ +E K   L SHSE
Sbjct: 522 GIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSE 581

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLA+AFGL+ T  G  IRI+KNLR+C DCHS +   S IT R I+VRD  RFHHF  G C
Sbjct: 582 KLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRC 641

Query: 572 SCRDYW 577
           SC ++W
Sbjct: 642 SCGNFW 647


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 316/555 (56%), Gaps = 57/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G   +L V+N L+ +YA    L DA   F  M   D VSW+ ++  + +  D
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA- 197
            +     F +    G Q D  TL  +       +D    R +H  +++ G  ++  V   
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGN 457

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLV-------------------------------- 225
           A+VDMYAK  ++D A ++F+ +P +D++                                
Sbjct: 458 AVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEII 517

Query: 226 ----TWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
               TW  ++ A                       LDV + T +ID+Y KCG +  A  +
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F ++ Q++ ++W+A+I+ +G HG  +K L LF  ML   V P+ +TFVSLL ACSH+G V
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 637

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG   F  M  ++ ++P +KHY CMVDLLGRAG L+ A   I+ M ++ D  +WGALLG
Sbjct: 638 EEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLG 696

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N++L + A+  L E   +N G+YVLLSN+YAN G+W+ V K+R L   R LKK 
Sbjct: 697 ACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 756

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ IEV  K+  F  G+ +HP+ +EIY  L  L+ K++  GYIPD +F L DV+E+ K
Sbjct: 757 PGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEK 816

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LAIAFG+I+TP  + IRI KNLRVCGDCH+  K +S IT+R I+VRD+NR
Sbjct: 817 EHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNR 876

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 877 FHHFKDGICSCGDYW 891



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 200/432 (46%), Gaps = 68/432 (15%)

Query: 58  VDPKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           + P F  F   L +C  +   R++H      G   N+ VA  L+++Y+       A +LF
Sbjct: 214 IRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD  SW+ M+ G  +  +     +   E    G++++  T+  ++  C    DI 
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
              LIH  V+K GL+ D FV  AL++MYAK   ++DAR+ F QM   D+V+W  +I A  
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393

Query: 234 -----------------NKFLLD------------------------------------V 240
                            N F  D                                    V
Sbjct: 394 QNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           ++G AV+DMYAK G +DSA ++F+ +  K+VISW+ +I  Y  +G   +A++++ MM   
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEEC 513

Query: 301 R-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           + ++PN+ T+VS+L A +H G +++G+++   +     +  DV   TC++D+ G+ GRL 
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLV 572

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS---- 415
           +A+ L   +  E     W A++    IH + +        +L+ +   P H   +S    
Sbjct: 573 DAMSLFYQVPQESSV-TWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSLLSA 630

Query: 416 ---NVYANAGRW 424
              + +   G+W
Sbjct: 631 CSHSGFVEEGKW 642



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 179/420 (42%), Gaps = 65/420 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA +V  G + ++ ++ +L+ +YA    ++ +   F+ + ++D  +W+ M+  +     
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 139 F---INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           F   I CF  ++  +   ++ D YT P V++AC     +V GR IH    K G   + FV
Sbjct: 198 FHEAIGCF--YQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFV 252

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI-------- 241
            A+L+ MY++      AR LFD MP RD+ +W  MI      G     LDV+        
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 242 ----------------------------------------LGTAVIDMYAKCGSIDSARE 261
                                                   +  A+I+MYAK G+++ AR+
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F +M   +V+SW+++IAAY  +     A   F  M  +   P+ +T VSL    + +  
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +    +   +     +  DV     +VD+  + G LD A K+ E + V KD   W  L+
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPV-KDVISWNTLI 491

Query: 382 GACRIHKNVDLAEMAAKSLLERQP--QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
                +     A    K + E +    N G +V +   YA+ G  Q   KI   + +  L
Sbjct: 492 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 551


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 335/596 (56%), Gaps = 67/596 (11%)

Query: 42  PRVPMQMGPDCQFTRSVDPKF--FISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVAN 96
           PR+ +Q+          +P    FIS L +C    ++ + + +H Q++  G   +  + N
Sbjct: 176 PRILIQL-----LVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWN 230

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD-FINCFETFREFIRCGMQ 155
            L+ +YA   +   A  +F  + ERD VSW+ ++ GF  VA+ + +    F + +  G  
Sbjct: 231 SLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF--VAEGYGSGLRIFNQMLAEGFN 288

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            + YT   ++R+C    D+ +G+ +H  ++K+ LD + FV  ALVDMYAK + ++DA  +
Sbjct: 289 PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI 348

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL------------- 238
           F+++  RDL  WTV++                          N+F L             
Sbjct: 349 FNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATL 408

Query: 239 -----------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                            D+ + +A++DMYAKCG ++ A  +FD +  ++ +SW+ +I  Y
Sbjct: 409 DSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGY 468

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HGQG KAL  F  ML    +P+ +TF+ +L ACSH GL+EEG + F+S+   + + P 
Sbjct: 469 SQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPT 528

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           ++HY CMVD+LGRAG+  E    IE M +  +  +W  +LGAC++H N++  E AA  L 
Sbjct: 529 IEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLF 588

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E +P+   +Y+LLSN++A  G W DV  +R LM+ R +KK PG +W+EV  ++H F   D
Sbjct: 589 ELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHD 648

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
            +HP+  EI+  L  L +KL   GY P+T+  LH+V +  K   L+ HSE+LA+AF L++
Sbjct: 649 GSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLS 708

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T     IRI KNLR+CGDCH F+K +S IT + ++VRD N FHHF+ G+CSC+++W
Sbjct: 709 TSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 173/383 (45%), Gaps = 61/383 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             +HA +   G  ++++++N  + +Y   +++ +    F  M   +  S + ++ GF   
Sbjct: 110 ESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGF--- 166

Query: 137 ADFINCFETFREFIRC---GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            D   C +  R  I+    G + + YT   +++ C  + D+  G+ IH  V+KSG++ D 
Sbjct: 167 CDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDS 226

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------ANK 235
            +  +LV++YAKC   + A ++F ++P RD+V+WT +I                   A  
Sbjct: 227 HLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQMLAEG 286

Query: 236 F----------------LLDVILG-------------------TAVIDMYAKCGSIDSAR 260
           F                L DV LG                   TA++DMYAK   ++ A 
Sbjct: 287 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 346

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            IF+R+ ++++ +W+ ++A Y   GQG+KA+  F  M    V PN  T  S L  CS   
Sbjct: 347 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 406

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            ++ G R   SM        D+   + +VD+  + G +++A  + + + V +D   W  +
Sbjct: 407 TLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTI 464

Query: 381 LGACRIHKNVDLAEMAAKSLLER 403
           +     H     A  A +++L+ 
Sbjct: 465 ICGYSQHGQGGKALKAFEAMLDE 487



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/403 (19%), Positives = 161/403 (39%), Gaps = 62/403 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R  + ++++  +++  G   +  + + L+ +Y   ++L  A  +   M  +D   W+  +
Sbjct: 3   RAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKL 62

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
              +         + F       ++L+ +    +I A     D   G  IH  V K G +
Sbjct: 63  SSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFE 122

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------- 233
            D  +  A V MY K + +++  Q F  M   +L +   ++                   
Sbjct: 123 SDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQL 182

Query: 234 -------NKFLLDVILGT------------------------------AVIDMYAKCGSI 256
                  N +    IL T                              +++++YAKCGS 
Sbjct: 183 LVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSA 242

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A ++F  + +++V+SW+A+I  +   G G   L +F  ML+    PN  TF+S+L +C
Sbjct: 243 NYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSC 301

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S    V+ G ++ + +  +     D    T +VD+  +   L++A  +   + +++D   
Sbjct: 302 SSLSDVDLGKQVHAQIVKNSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRL-IKRDLFA 359

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNV 417
           W  ++     +      E A K  ++ Q +   P  + L S++
Sbjct: 360 WTVIVAG---YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSL 399


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/556 (41%), Positives = 318/556 (57%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VH   V  G   +  V   L+ +Y+    +  A  LF+ M   D V+++ ++ G+S  
Sbjct: 232 RCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVN 291

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +  E F+E    G + +S TL  VI         ++ R +H  V+K+ LD D  V 
Sbjct: 292 GMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVS 351

Query: 197 AALVDMYAKCKVIDDAR----------------------------------QLFDQM--- 219
            AL  +Y +   ++ AR                                  QL  ++   
Sbjct: 352 TALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQ 411

Query: 220 PTRDLVTWTV-----------------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
           P    ++ T+                 +I   K  L+V + TA+IDMYAKCGSI  AR I
Sbjct: 412 PNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSI 471

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDRM  KNV+SW+AMI+ YG HGQG +AL L+  ML +R+LP   TF+S++YACSH GLV
Sbjct: 472 FDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLV 531

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGLWGALL 381
           +EG ++F  M +++ + P ++H TCMVDLLGRAG+L+EAL+LI          G+WGALL
Sbjct: 532 DEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALL 591

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC +HKN DLA++A++ L E   +N G+YVLLSN+Y +   + + A +R     R+L K
Sbjct: 592 GACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVK 651

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG T IE+ ++ H F  GD  HPQSE IY  L  L+ K+  AGY P T   L+DV+EE 
Sbjct: 652 TPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEE 711

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   +  HSEKLAIAFGL++T  GT IRI+KNLRVC DCH+  K +S +T+R+I+VRDA+
Sbjct: 712 KEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDAS 771

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 772 RFHHFRDGVCSCGDYW 787



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 178/425 (41%), Gaps = 65/425 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   VA G   +  VA+ L  +Y       DA  +F+ +   D++ W+ ++ G    
Sbjct: 134 RTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS 193

Query: 137 ADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                  E F   +  G ++ DS TL   +RA  +   + MGR +H   +K GL   + V
Sbjct: 194 ----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHV 249

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------ANKF 236
              L+ +Y+KC  +D A+ LFD+M   DLV +  +I                    A+ +
Sbjct: 250 VTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW 309

Query: 237 LLDVILGTAVIDMYAKCG-----------------------------------SIDSARE 261
             +     AVI +Y+  G                                    ++SAR 
Sbjct: 310 RPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARS 369

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           IFD M +K + SW+AMI+ Y  +G  + A+ LF +M    V PN IT  S L AC+H G 
Sbjct: 370 IFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGA 429

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +  G +    +     +  +V   T ++D+  + G + EA  + + M   K+   W A++
Sbjct: 430 LSLG-KWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMI 487

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA--NAGRWQDVAKIRDLMTRRRL 439
               +H     A    K +L+ +   P     LS +YA  + G   +  K+  +MT    
Sbjct: 488 SGYGLHGQGAEALKLYKDMLDARIL-PTSSTFLSVIYACSHGGLVDEGQKVFRVMT-NEY 545

Query: 440 KKIPG 444
           +  PG
Sbjct: 546 RITPG 550



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 125/317 (39%), Gaps = 73/317 (23%)

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV-- 229
            D    R +H + + +G   D FV +AL  +Y K    DDAR++FD +P+ D + W    
Sbjct: 128 NDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLL 187

Query: 230 --------------MIGANKFLLD----------------VILGTAVIDMYAKC------ 253
                         M+ A +   D                + +G  V     KC      
Sbjct: 188 AGLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHE 247

Query: 254 -------------GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                        G +DSA+ +FDRM   ++++++A+I+ Y  +G  + +++LF  + +S
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAG 356
              PN  T V+++   S       G  L +     F V+     D    T +  L  R  
Sbjct: 308 GWRPNSSTLVAVIPVYS-----PFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLN 362

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK--SLLERQPQNPGHYVLL 414
            ++ A  + ++M +EK    W A++     +    L EMA     L++     P    + 
Sbjct: 363 DMESARSIFDAM-LEKTMESWNAMISG---YAQNGLTEMAVALFQLMQELNVQPNPITIS 418

Query: 415 SNVYANA-------GRW 424
           S + A A       G+W
Sbjct: 419 STLSACAHLGALSLGKW 435


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/635 (34%), Positives = 348/635 (54%), Gaps = 82/635 (12%)

Query: 20  FSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQV 79
           F S++        H H Q P+     +QM       +  +    ++  ++ R   + ++V
Sbjct: 211 FPSNSRTLSTFTTHIHLQQPL-----LQMALHGFNMKFENYNAILNECVNKRAFREGQRV 265

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           HA ++    L ++ +  +L+ +Y    +L DAH +F+ M ER+ VSW+ M+  +S+    
Sbjct: 266 HAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYA 325

Query: 140 INCFETFREFIRCGM---------------------QLDSYTLPFVIRACRDRKDIVMGR 178
                 F   ++  +                     + + +T   V+ +C      ++GR
Sbjct: 326 SQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGFILGR 385

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GANKFL 237
            IH +++K   +   FV ++L+DMYAK   I +AR +F+ +P RD+V+ T +I G  +  
Sbjct: 386 QIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLG 445

Query: 238 LD-----------------------------------------------------VILGT 244
           LD                                                     V+L  
Sbjct: 446 LDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQN 505

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVL 303
           ++IDMY+KCG++  +R IFD M ++ VISW+AM+  Y  HG+G++ L LF +M   ++V 
Sbjct: 506 SLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVK 565

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           P+ +T +++L  CSH GL ++GL +F+ M      V P ++HY C+VDLLGR+GR++EA 
Sbjct: 566 PDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAF 625

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + I+ M  E    +WG+LLGACR+H NVD+ E A + LLE +P N G+YV+LSN+YA+AG
Sbjct: 626 EFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAG 685

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW+DV+ +RDLM ++ + K PG + IE++  +H F   D +HP+ EEI   +  LS   +
Sbjct: 686 RWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFK 745

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY+PD +  LHDVDEE K   L  HSEKLA++FGLIA+P    IR++KNLR+C DCH+
Sbjct: 746 EVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHN 805

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           F K++S +  R + +RD NRFH   GG CSC DYW
Sbjct: 806 FAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/659 (36%), Positives = 354/659 (53%), Gaps = 96/659 (14%)

Query: 10  LVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLS 69
           +V++S K    +S + A I+L+     Q P NP+ P       Q          +++L  
Sbjct: 1   MVTLSRKFSTATSDSLACISLK-----QFPQNPQKPTPFYQIQQQQPKQLESQIVTTLDG 55

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL--FNGMKERDSVSWS 127
           C+N+ QI+QVHA+I+  G   +  V  KL+          D + L  FN +   +   ++
Sbjct: 56  CKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYN 115

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH-DIVLK 186
            ++ G+          E +    + G+   S+T   + +AC  + D+ +GR IH   +L 
Sbjct: 116 ALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILV 175

Query: 187 SGLDIDQFVCAALVDMYAKC-------KVIDD------------------------ARQL 215
            G   D  V  +++DMY KC       KV D+                        A +L
Sbjct: 176 GGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGEL 235

Query: 216 FDQMPTRDLVTWTVM-----------------------------------------IGAN 234
           FD +P +D+V WTVM                                         +GA 
Sbjct: 236 FDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAA 295

Query: 235 KFL---------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
           K+                  V++G+A+IDMY+KCGS+  A  +F  M+++NV S+S+MI 
Sbjct: 296 KYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMIL 355

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +  HG+   A+ LF  M+ + + PNR+TF+ +L ACSH G+VE+G ++F  M   + ++
Sbjct: 356 GFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIK 415

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P   HYTCMVDLLGRAGRL EA +L+++M +E   G+WGALLGACRIHK+ D+A +AA  
Sbjct: 416 PSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANH 475

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK-IHQFS 458
           L E +P   G+Y+LL+N+YA+ GRW DV+ +R LM  R L+K P ++WIE E   +H+F 
Sbjct: 476 LFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFF 535

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD THP+S EI + L  L ++LE  GY P  +   +DV++E K   L +HSEKLA+AFG
Sbjct: 536 SGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFG 595

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI+T  G+ IRI+KNLR+C DCHS I   S IT R IIVRD  RFHHF  G CSC ++W
Sbjct: 596 LISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 328/572 (57%), Gaps = 57/572 (9%)

Query: 63  FISSLLSC-RN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           FI  L  C RN  + + +  H + +      ++ ++N L+  Y+    +  A  +F+GM 
Sbjct: 66  FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER  VSW+ M+G +++        + F E    G +   +T+  V+ AC    D +  + 
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKK 185

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H + +K+ LD++ +V  AL+D+YAKC +I+DA Q+F+ M  +  VTW+ M+        
Sbjct: 186 LHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKN 245

Query: 234 ------------------NKFLL------------------------------DVILGTA 245
                             N+F L                              +V + ++
Sbjct: 246 YEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASS 305

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
            +DMYAKCGS+  +  IF  +++KN+  W+ +I+ +  H + K+ + LF  M    + PN
Sbjct: 306 AVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPN 365

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TF SLL  C HTGLVEEG R F  M   + + P+V HY+CMVD+LGRAG L EA +LI
Sbjct: 366 EVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELI 425

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           +S+  E    +WG+LL +CR+ KN++LAE+AAK L E +P+N G++VLLSN+YA   +W+
Sbjct: 426 KSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWE 485

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           ++AK R L+    +KK+ G +WI++++K+H F VG+S+HP+  EI  ML  L  +L   G
Sbjct: 486 EIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFG 545

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y P    ELHDV+   K   L  HSEKLA+ FGL+  PEG+ +RIMKNLR+C DCH F+K
Sbjct: 546 YKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMK 605

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             S  TRR IIVRDANRFHHF  G CSC ++W
Sbjct: 606 AASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 341/611 (55%), Gaps = 91/611 (14%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD----A 111
           R  +PK F  SL +C ++  ++ +HA ++    + ++  A++L+       + T     A
Sbjct: 15  RLKNPKLF--SLETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYA 72

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F+ ++  +   ++ M+ G S   +    F  + +  R G+  D+ T PF++++C   
Sbjct: 73  SRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKL 132

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA--------------------------- 204
             I MG   H  ++K G + D +V  +LV MYA                           
Sbjct: 133 HCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMI 192

Query: 205 ----KCKVIDDARQLFDQMPTRDLVTWTVM------------------------------ 230
               KC  ++ AR+LFDQMP ++LVTW+ M                              
Sbjct: 193 RGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANET 252

Query: 231 -----------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
                      +GA             N   L++ILGTA++DMYA+CGSID A  +F+ +
Sbjct: 253 VMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDL 312

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
            +++ +SW+A+IA    HG  +++L  F  M+ + + P  ITF ++L ACSH GLVE G 
Sbjct: 313 PERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGF 372

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           ++F SM  D  V P ++HY CMVDLLGRAG+L+EA + +  M V+ +  +WGALLGACRI
Sbjct: 373 QIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRI 432

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           HKN ++ E   K L++  PQ+ G+YVLLSN+YANA  W+ V ++R +M  + LKK PG +
Sbjct: 433 HKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHS 492

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
            IE++ ++H+F++GDS+HP+ ++I RM   +  ++  AGY  +T   L D+DEE K   L
Sbjct: 493 LIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESAL 552

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
           + HSEKLAIAFG++ +  GT IRI+KNLRVC DCH+  K +S +  R +IVRD NRFHHF
Sbjct: 553 HRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHF 612

Query: 567 EGGACSCRDYW 577
             G CSC DYW
Sbjct: 613 RQGLCSCMDYW 623


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/518 (41%), Positives = 309/518 (59%), Gaps = 50/518 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S L SC +I  +   +QVH  ++  G   N+ V+N L+ +YA    L ++  LF  + 
Sbjct: 246 FASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP 305

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            R+ V+W+ M+ G+ +  D       ++  + C +Q    T   V+RAC     + +G  
Sbjct: 306 NRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQ 365

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           IH + LK+                           ++D+                    D
Sbjct: 366 IHSLSLKT---------------------------IYDK--------------------D 378

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V++G A+IDMYAKCGSI +AR +FD + +++ ISW+AMI+ Y  HG   +AL  F MM  
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQE 438

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           +  +PN++TFVS+L ACS+ GL++ G   F SM  D+ + P ++HYTCMV LLGR+G LD
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLD 498

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +A+KLIE + +E +  +W ALLGAC IH +VDL  M+A+ +L+  PQ+   +VLLSN+YA
Sbjct: 499 KAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYA 558

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
              RW  VA +R  M  + +KK PG +WIE +  +H FSVGD++HP  + I  ML  L+ 
Sbjct: 559 RTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNM 618

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           K E AGY+PD N  L DV+++ K  +L+ HSE+LA+AFGLI TP   HIRI+KNLR+C D
Sbjct: 619 KTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTD 678

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CHS IK +S I +R II+RD NRFHHF+ G CSC DYW
Sbjct: 679 CHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 185/403 (45%), Gaps = 65/403 (16%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA I   G  +N  V   L+  YA+  ++  A   F+ +  +D VSW+ MV  +++   
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F +  + F E    G   + +T   V++AC   +   +G+ +H  VLK+  ++D +V   
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------AN 234
           L+D+Y K    +D  ++F++MP  D++ W+ MI                          N
Sbjct: 183 LLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPN 242

Query: 235 KFLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFD 264
           +F                                +V +  A++D+YAKCG +D++ ++F 
Sbjct: 243 QFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFM 302

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            +  +N ++W+ MI  Y   G G KAL L+  ML  +V  + +T+ S+L AC+    +E 
Sbjct: 303 ELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMEL 362

Query: 325 GLRLFS----SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           G ++ S    +++D      DV     ++D+  + G +  A +L+  M  E+DE  W A+
Sbjct: 363 GTQIHSLSLKTIYD-----KDVVVGNALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAM 416

Query: 381 LGACRIHKNVDLAEMAAKSLLERQ-PQNPGHYVLLSNVYANAG 422
           +    +H  V  A  A + + E +   N   +V + +  +NAG
Sbjct: 417 ISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAG 459


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 336/588 (57%), Gaps = 57/588 (9%)

Query: 47  QMGPDCQFTRSVDP--KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL 104
           Q+ P      +VD      I+++ +C +I   R +H +++      +  + ++L+  Y  
Sbjct: 26  QLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVE 85

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFET-FREFIRCGMQLDSYTLPF 163
                DA  LF+ + ++D VSW+ ++ GFS+ AD   C    FR     G++ +  T+  
Sbjct: 86  LGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIP 145

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           V+ AC    ++ +G+ IH I +KSG+ ++  V  +L+++Y KC  ++ A  LF+ M  + 
Sbjct: 146 VVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQS 205

Query: 224 LVTWTVMI-----------GANKFLL---------------------------------- 238
           LV+W  M+           G   F++                                  
Sbjct: 206 LVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHG 265

Query: 239 ---------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    ++ + TA++D+YAK G++  + ++F  M   + ++W+AM+++Y  HG+G++
Sbjct: 266 YILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGRE 325

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A++ F +M+   V+P+ +TF  LL ACSH+GLVEEG   F  M++ + V   V+HY+CMV
Sbjct: 326 AIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMV 385

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGR+G L++A KLI+SM +E + G+WGAL+GACR+  N++L +  A+ L    P +  
Sbjct: 386 DLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSR 445

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
           +Y+ LSN+Y+ AG+W+D +K+R LM  R L + PG ++IE  NKIH F +GD +HP +E+
Sbjct: 446 NYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQ 505

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY  L  L  K    G+   T + LHDVDEEVK   +  HSEKLAIAFGL+ T  G  + 
Sbjct: 506 IYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLI 565

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I KN+R+CGDCH F K +S I +R II+RD  RFHHF  G CSC DYW
Sbjct: 566 ITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 319/560 (56%), Gaps = 54/560 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N     Q+HA  +  G  ++L V N L+ +YA   ++     +F+ M ++D VSW+ ++ 
Sbjct: 398 NTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIA 457

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL-- 189
           G ++        E FRE    G+ LD   +  ++ AC   K I   + IH  +++ GL  
Sbjct: 458 GHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSD 517

Query: 190 --------DI--------------------DQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
                   D+                    D     +++  Y    + ++A +LF  M  
Sbjct: 518 LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKE 577

Query: 222 RDLVTWTVMIGA-----------------------NKFLLDVILGTAVIDMYAKCGSIDS 258
             +   ++ + +                         F+L+  L + ++DMYA+CG+++ 
Sbjct: 578 TGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEK 637

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           +R +F+ +R K+++ W++MI AYG HG G+ A+DLF  M    + P+ I FV++LYACSH
Sbjct: 638 SRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSH 697

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           +GL+ EG R   SM  ++ + P  +HY C+VDLLGRA  L+EA + ++ M VE    +W 
Sbjct: 698 SGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWC 757

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALLGAC+IH N +L E+AA+ LLE  P+NPG+YVL+SNVY+   RW+DV  +R  M    
Sbjct: 758 ALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASG 817

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDV 497
           LKK PG +WIEV NK+H F   D +HPQS EIY  L  ++EKL +  GY+  T F LH+ 
Sbjct: 818 LKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNA 877

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
            EE KV  LY HSE+LAIA+G++ TPEG  +RI KNLRVCGDCH+F K +S    R +++
Sbjct: 878 KEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVM 937

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RDANRFHHF+GG CSC D W
Sbjct: 938 RDANRFHHFKGGVCSCGDVW 957



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 194/414 (46%), Gaps = 61/414 (14%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+++L +C +   I+Q   +HA ++      N+ VAN L+ +YA    + +A  +F  M 
Sbjct: 285 FVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMD 344

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           + D++SW+ M+ GF +   +    + + E    G + D   +  +I A     + + G  
Sbjct: 345 DWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ 404

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN----- 234
           IH   +K+GLD D  V  +LVDMYAK   +     +FD+MP +D+V+WT +I  +     
Sbjct: 405 IHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464

Query: 235 ------------------------------------------------KFLLDVILGTAV 246
                                                           K L D++L   +
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGI 524

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +D+Y +CG++D A  +F+ +  K+V+SW++MI+ Y ++G   +AL+LF +M  + V P+ 
Sbjct: 525 VDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDS 584

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           I+ VS+L A +    +++G  +   +    F +   +   + +VD+  R G L+++  + 
Sbjct: 585 ISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--STLVDMYARCGTLEKSRNVF 642

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             +   KD  LW +++ A  +H     A +     +E +   P H   ++ +YA
Sbjct: 643 NFIR-NKDLVLWTSMINAYGMH-GCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 694



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/309 (26%), Positives = 143/309 (46%), Gaps = 51/309 (16%)

Query: 77  RQVHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +QVHA ++    L N + ++ +L+++Y     L DA  LF+GM  +   +W+ M+G +  
Sbjct: 98  QQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVT 157

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             + +   E +RE    G+ LD+ T P +++AC   KD   G  +H + +K G     FV
Sbjct: 158 NGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFV 217

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
             ++V MY KC  ++ ARQLFD+MP + D+V+W  MI                       
Sbjct: 218 ANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMI----------------------- 254

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                                   +AY  +GQ  +AL LF  M  + + PN  TFV+ L 
Sbjct: 255 ------------------------SAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQ 290

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC  +  +++G+ + +++    +   +V     ++ +  R G++ EA  +  +M  + D 
Sbjct: 291 ACEDSSFIKQGMFIHATVLKS-SYYINVFVANALIAMYARFGKMGEAANIFYNMD-DWDT 348

Query: 375 GLWGALLGA 383
             W ++L  
Sbjct: 349 ISWNSMLSG 357


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 327/570 (57%), Gaps = 56/570 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           ++  +S R I + ++VH  ++    L ++ +  +L+ +Y     L DA  +F+ M +++ 
Sbjct: 97  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+  +S+          F E +R   + + +T   ++ +C        GR IH I
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSI 216

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLD--- 239
            +K   +   FV ++L+DMYAK   I DA  +F  +P RD+V  T ++ G  +  LD   
Sbjct: 217 AIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEA 276

Query: 240 --------------------------------------------------VILGTAVIDM 249
                                                             V+L  ++IDM
Sbjct: 277 LKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDM 336

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRIT 308
           Y+KCG++  AR IFD M ++  ISW+AM+  Y  HG  ++ L+LF +M   ++V P+ IT
Sbjct: 337 YSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSIT 396

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           ++++L  CSH  L + GL +F +M +    + PD+ HY C+VDLLGRAGR++EA   I+ 
Sbjct: 397 YLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKK 456

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M       +WG+LLG+CR+H +V++  +  + LLE +P+N G+YV+LSN+YA+AG+W+D+
Sbjct: 457 MPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDM 516

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
             IRDLM  + + K PG +W+E++  +H F   D THP+ EE+ + +  LS K +  GY+
Sbjct: 517 RNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYV 576

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PD +  L+DVDEE K   L  HSEKLA+AFGLIATPEGT IR++KNLR+C DCHSF K V
Sbjct: 577 PDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFV 636

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S +  R +I+RD NRFH+  GG CSC DYW
Sbjct: 637 SRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 121/276 (43%), Gaps = 64/276 (23%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++  C  ++ I  G+ +H  ++K+      ++   L+ +Y KC  + DAR++FD+MP ++
Sbjct: 96  ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKN 155

Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
           +V+WT MI A                        N F    IL                 
Sbjct: 156 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHS 215

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        G++++DMYAK G I  A  +F  + +++V++ +A+I+ Y   G  ++
Sbjct: 216 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEE 275

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY---- 345
           AL LF  +    +  N +T+ S+L A S    +  G ++ S +     +R     Y    
Sbjct: 276 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHV-----LRSGQYSYVVLL 330

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             ++D+  + G +  A ++ +SM  E+    W A+L
Sbjct: 331 NSLIDMYSKCGNVCYARRIFDSMP-ERTCISWNAML 365


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/555 (40%), Positives = 307/555 (55%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+H Q++  G   N+ V + L+ +YA H  L  AH +   + E D VSW+ ++ G+++ 
Sbjct: 435 EQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQH 494

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    + F+E +  G+Q D+      I AC   + +  GR IH     SG   D  + 
Sbjct: 495 NLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIG 554

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------------NKFLLD 239
            ALV +YA+C  I +A   F+++  +D ++W  +I                   N+  L+
Sbjct: 555 NALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLE 614

Query: 240 V---ILGTAV----------------------------------IDMYAKCGSIDSAREI 262
                 G+AV                                  I  YAKCGSI+ AR  
Sbjct: 615 ASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARRE 674

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M +KN +SW+AMI  Y  HG G +A++LF  M     +PN +TFV +L ACSH GLV
Sbjct: 675 FCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLV 734

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            +GL  F SM  +  + P   HY C+VDL+ RAG L  A K IE M +E D  +W  LL 
Sbjct: 735 TKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLS 794

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC +HKNV++ E AA+ LLE +P++   YVLLSN+YA +G+W    + R +M  R +KK 
Sbjct: 795 ACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKE 854

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV+N +H F VGD  HP +++IY  L  L++K    GY  D    L+DV++E K
Sbjct: 855 PGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQK 914

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              +Y HSEKLAI FGL++  +   I +MKNLRVC DCHS+IK VS I+ R IIVRDA R
Sbjct: 915 DPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYR 974

Query: 563 FHHFEGGACSCRDYW 577
           FHHFEGG CSC+DYW
Sbjct: 975 FHHFEGGICSCKDYW 989



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 170/394 (43%), Gaps = 61/394 (15%)

Query: 48  MGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA 107
           + PDC    S+     +S+  S   + +  Q+H+ ++  G  +++IV   LL +Y     
Sbjct: 310 LKPDCVTVASL-----LSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSD 364

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           +  AH +F   +  + V W+VM+  F K+ +    F  FR+    G+  + +T P ++R 
Sbjct: 365 IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRT 424

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C     + +G  IH  V+K+G   + +VC+ L+DMYAK   +D A  +   +   D+V+W
Sbjct: 425 CTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSW 484

Query: 228 TVMIGA----NKFL---------------LDVILGTAVIDMYAKCGSIDSAREI------ 262
           T +I      N F                 D I  ++ I   A   +++  R+I      
Sbjct: 485 TALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYV 544

Query: 263 -----------------------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                                        F+++  K+ ISW+ +I+ +   G  + AL +
Sbjct: 545 SGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKV 604

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M  +++  +  TF S + A ++   +++G ++  +M        D++    ++    
Sbjct: 605 FAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQI-HAMIIKRGFDSDIEVSNALITFYA 663

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           + G +++A +    M  EK++  W A++     H
Sbjct: 664 KCGSIEDARREFCEMP-EKNDVSWNAMITGYSQH 696



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 177/409 (43%), Gaps = 38/409 (9%)

Query: 52  CQFTRSVDPK--FFISSLLSCRN----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           C    +V P    F S L +C      I    Q+HA+I+  G L + I++N L+ +YA +
Sbjct: 101 CMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKN 160

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             +  A  +F+ +  +DSVSW  M+ GFS+          F E    G+    Y    V+
Sbjct: 161 GLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVL 220

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
             C   K   +G  +H +V K G  ++ +VC ALV +Y++      A ++F +M ++D V
Sbjct: 221 SGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEV 280

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNVISWSAMIAAY 281
           ++  +I                   A+ G  D A E+F +M+    + + ++ +++++A 
Sbjct: 281 SFNSLISG----------------LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             +G   K   L   ++ + +  + I   +LL    +   ++    +F +     A   +
Sbjct: 325 ASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLT-----AQTEN 379

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACRIHKNVDLAEMAAK 398
           V  +  M+   G+   L E+ ++   M ++    ++  + ++L  C     +DL E    
Sbjct: 380 VVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHT 439

Query: 399 SLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
            +++   Q N     +L ++YA  G+      I   +T      +  WT
Sbjct: 440 QVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTE---DDVVSWT 485



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 55/318 (17%)

Query: 68  LSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           L+  ++ + +++H +I+  G     ++ NKL+ +Y     L     +F  M  R   SW 
Sbjct: 21  LNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWD 80

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHDIVLK 186
            ++ GF +        + F   I   +     +   V+RAC   R  I     IH  ++ 
Sbjct: 81  KIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIIC 140

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------- 231
            GL     +   L+ +YAK  +I  AR++FD + T+D V+W  MI               
Sbjct: 141 HGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHL 200

Query: 232 ---------------------GANKF-LLDV-----------------ILGTAVIDMYAK 252
                                G  K  L DV                  +  A++ +Y++
Sbjct: 201 FCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSR 260

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
             +  SA ++F +M+ K+ +S++++I+     G    AL+LF  M    + P+ +T  SL
Sbjct: 261 MPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASL 320

Query: 313 LYACSHTGLVEEGLRLFS 330
           L AC+  G + +G +L S
Sbjct: 321 LSACASNGALCKGEQLHS 338



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 26/231 (11%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +S+  +  NI Q +Q+HA I+  G  +++ V+N L+  YA   ++ DA   F  M E++ 
Sbjct: 624 VSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND 683

Query: 124 VSWSVMVGGFSKVA---DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           VSW+ M+ G+S+     + +N FE  ++    G   +  T   V+ AC     +  G   
Sbjct: 684 VSWNAMITGYSQHGYGNEAVNLFEKMKQV---GEMPNHVTFVGVLSACSHVGLVTKGLGY 740

Query: 181 HDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLL 238
            + + K  GL       A +VD+ ++   +  AR+  ++MP   D   W  ++ A     
Sbjct: 741 FESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHK 800

Query: 239 DVILG----------------TAVI--DMYAKCGSIDSAREIFDRMRQKNV 271
           +V +G                T V+  +MYA  G  D   +    MR + V
Sbjct: 801 NVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGV 851



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 47/165 (28%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+  +  T  +++  C +   +V  + +H  +LK G   +  +C  LVD+Y     +D  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
            ++F+ MP R + +W  +I                               F   +  N  
Sbjct: 65  VKVFEDMPNRSVRSWDKIISG-----------------------------FMEKKMSN-- 93

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
                           + LDLF  M+   V P  I+F S+L ACS
Sbjct: 94  ----------------RVLDLFSCMIEENVSPTEISFASVLRACS 122


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 317/555 (57%), Gaps = 57/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G    L V+N L+ +YA    L DA  +F  M  RD VSW+ ++  + +  D
Sbjct: 295 IHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDD 354

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA- 197
            +     F +    G++ D  TL  +       +D    R +H  +++ G  ++  V   
Sbjct: 355 PVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGN 414

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLV-------------------------------- 225
           A++DMYAK  VID A ++F+ +P +D+V                                
Sbjct: 415 AVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIK 474

Query: 226 ----TWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
               TW  ++ A                       LDV +GT +ID+Y KCG +  A  +
Sbjct: 475 LNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCL 534

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F ++ +++ + W+A+I+ +G HG G+KAL LF  M    V P+ +TF+SLL ACSH+GLV
Sbjct: 535 FYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLV 594

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG   F  M  ++ ++P +KHY CMVDLLGRAG L+ A   I+ M +  D  +WGALLG
Sbjct: 595 DEGKWFFHLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLG 653

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N++L + A+  L E   +N G+YVLLSN+YAN G+W+ V K+R L   R LKK 
Sbjct: 654 ACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 713

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ IEV  ++  F  G+ +HP+ +EIY  L  L+ K++  GYIPD +F L DV+E+ K
Sbjct: 714 PGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEK 773

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LAIAFG+I+TP  + IRI KNLRVCGDCH+  K +S IT R I+VRD+ R
Sbjct: 774 EHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKR 833

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 834 FHHFKNGICSCGDYW 848



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 199/445 (44%), Gaps = 76/445 (17%)

Query: 51  DCQFTRSVDPKF------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL 104
           DC +   +  KF      F   L +C+ +   R++H  +   G   ++ VA  L+++Y+ 
Sbjct: 160 DCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSR 219

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
              +  A +LF+ M  RD  SW+ M+ G  +  +     +   E    G+ +DS T+  +
Sbjct: 220 FGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASI 279

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           +  C    DI    LIH  V+K GL+ + FV  AL++MYAK   + DA+++F QM  RD+
Sbjct: 280 LPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDV 339

Query: 225 VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI--- 262
           V+W  +I A                   N    D++   ++  + A+     ++R +   
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGF 399

Query: 263 ---------------------------------FDRMRQKNVISWSAMIAAYGYHGQGKK 289
                                            F+ +  K+V+SW+ +I+ Y  +G   +
Sbjct: 400 IMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASE 459

Query: 290 ALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           A++++ MM   R +  N+ T+VS+L A +H G +++G+R+   +     +  DV   TC+
Sbjct: 460 AIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKT-NLHLDVFVGTCL 518

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN- 407
           +DL G+ GRL +A+ L   +  E     W A++    IH +    E A K   E Q +  
Sbjct: 519 IDLYGKCGRLVDAMCLFYQVPRESSVP-WNAIISCHGIHGH---GEKALKLFREMQDEGV 574

Query: 408 -PGHYVLLSNVYA-------NAGRW 424
            P H   +S + A       + G+W
Sbjct: 575 KPDHVTFISLLSACSHSGLVDEGKW 599



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 202/474 (42%), Gaps = 75/474 (15%)

Query: 28  IALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGG 87
           I +E    +    N ++P       +    +D   F S   SC      +++HA +V  G
Sbjct: 48  IQMEQSSGDNGWFNGQIPFHWRQPAK-NEEID---FNSLFDSCTKTLLAKRLHALLVVSG 103

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF---INCFE 144
            + +  ++ +L+ +YA    ++ +   F+ ++ +D  +W+ M+  + +   F   I+CF 
Sbjct: 104 KIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCF- 162

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
            ++  +    Q D YT P V++AC   + +V GR IH  V K G   D FV A+L+ MY+
Sbjct: 163 -YQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYS 218

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI----------------- 241
           +   +  AR LFD MP RD+ +W  MI      G     LDV+                 
Sbjct: 219 RFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVAS 278

Query: 242 -------------------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                          +  A+I+MYAK G++  A+++F +M  ++
Sbjct: 279 ILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRD 338

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+++IAAY  +     A   F  M  + + P+ +T VSL    + +   +    +  
Sbjct: 339 VVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHG 398

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            +     +   V     ++D+  + G +D A K+   + V KD   W  L+     +   
Sbjct: 399 FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPV-KDVVSWNTLISG---YTQN 454

Query: 391 DLAEMAAK--SLLERQPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
            LA  A +   ++E   +   N G +V +   YA+ G  Q   +I   + +  L
Sbjct: 455 GLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNL 508



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 1/204 (0%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  ++H  ++      ++ V   L+ +Y     L DA  LF  +    SV W+ ++    
Sbjct: 495 QGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHG 554

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                    + FRE    G++ D  T   ++ AC     +  G+    ++ + G+     
Sbjct: 555 IHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLK 614

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
               +VD+  +   ++ A      MP   D   W  ++GA +   ++ LG    D   + 
Sbjct: 615 HYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEV 674

Query: 254 GSIDSAREIFDRMRQKNVISWSAM 277
            S +    +       NV  W  +
Sbjct: 675 DSENVGYYVLLSNIYANVGKWEGV 698


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 324/577 (56%), Gaps = 56/577 (9%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           + D    +S +  C N   +   R +H   +       L + N LL +Y+    L  A  
Sbjct: 248 NTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQ 307

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  M ER  VSW+ M+ G+++          F E  + G+  D +T+  ++ AC     
Sbjct: 308 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGL 367

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           +  G+ +H+ + ++ +  D FV  AL+DMYAKC  + DA  +F +M  +D+V+W  MIG 
Sbjct: 368 LENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGG 427

Query: 234 -----------------------------------------------------NKFLLDV 240
                                                                N F LD 
Sbjct: 428 YSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR 487

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +  A++DMY KCG++  AR +FD + +K+++SW+ MIA YG HG G +A+  F  M +S
Sbjct: 488 HVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNS 547

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+ ++F+S+LYACSH+GL++EG   F+ M ++  + P  +HY C+VDLL RAG L +
Sbjct: 548 GIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSK 607

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A K I+ M +E D  +WGALL  CRI+ +V LAE  A+ + E +P+N G+YVLL+N+YA 
Sbjct: 608 AYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAE 667

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           A +W++V K+R+ + RR L+K PG +WIE++ K+H F  GDS+HP + +I  +L     +
Sbjct: 668 AEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTR 727

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  G+ P   + L   D+  K   L  HSEK+A+AFG+++ P G  +R+ KNLRVCGDC
Sbjct: 728 MKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDC 787

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H   K +S + +R II+RD+NRFHHF+ G+CSCR +W
Sbjct: 788 HEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 157/304 (51%), Gaps = 19/304 (6%)

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           +++ +  F ++ +     E   +  +  ++L +Y    V++ C D K I  GR IH I+ 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELRTYC--SVLQLCADLKSIQDGRRIHSIIQ 128

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
            + +++D  + + LV MY  C  + + R++FD++    +  W +++     + +     +
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 246 VIDMYAKCG--SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           +     + G   ++SAR++FD +  ++VISW++MI+ Y  +G  +K LDLF  ML   + 
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLD 359
            +  T VS++  CS+TG++     L       +A++     ++    C++D+  ++G L+
Sbjct: 249 TDLATMVSVVAGCSNTGML-----LLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLN 303

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNV 417
            A+++ E+M  E+    W +++     +    L++M+ +    +E++  +P  + + + +
Sbjct: 304 SAIQVFETMG-ERSVVSWTSMIAG---YAREGLSDMSVRLFHEMEKEGISPDIFTITTIL 359

Query: 418 YANA 421
           +A A
Sbjct: 360 HACA 363



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 165/334 (49%), Gaps = 13/334 (3%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           ++ + + S L  C ++  I   R++H+ I +     + ++ +KL+++Y     L +   +
Sbjct: 99  LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRI 158

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRD--R 171
           F+ +       W++++ G++K+ +F      F+     G++ ++S    F     RD   
Sbjct: 159 FDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVIS 218

Query: 172 KDIVMGRLIHDIVLKSGLDI-DQFVCAAL-VDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
            + ++   + + + + GLD+ +Q +   +  D+     V+         +  R L  + +
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAI 278

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                K   ++ L   ++DMY+K G+++SA ++F+ M +++V+SW++MIA Y   G    
Sbjct: 279 KASFGK---ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 335

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           ++ LF  M    + P+  T  ++L+AC+ TGL+E G  + + + ++  ++ D+     ++
Sbjct: 336 SVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKEN-KMQSDLFVSNALM 394

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           D+  + G + +A  +   M V KD   W  ++G 
Sbjct: 395 DMYAKCGSMGDAHSVFSEMQV-KDIVSWNTMIGG 427


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 324/557 (58%), Gaps = 37/557 (6%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD    IS L+ C N   +   + VH+  +       +  +N LL +Y+    L  A  +
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M ER+ VSW+ M+ G+++        +  ++  + G++LD   +  ++ AC     +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSL 368

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +HD +  + ++ + FVC AL+DMYAKC  ++ A  +F  M  +D+++W  MIG  
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL 428

Query: 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                           N +  D  +  A++D+Y KCG +  AR 
Sbjct: 429 KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD +  K+++SW+ MIA YG HG G +A+  F  M  + + P+ ++F+S+LYACSH+GL
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E+G R F  M +DF + P ++HY CMVDLL R G L +A + IE++ +  D  +WGALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALL 608

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
             CR + +++LAE  A+ + E +P+N G+YVLL+N+YA A +W++V ++R+ + ++ L+K
Sbjct: 609 CGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRK 668

Query: 442 IPGWTWIEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
            PG +WIE++ K++ F  G +S+HP S+ I  +L  +  K++  G+ P T + L + DE 
Sbjct: 669 NPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEM 728

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLA+AFGL+  P    IR+ KNLRVCGDCH   K +S  TRR I++RD 
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDP 788

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSCR +W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 143/310 (46%), Gaps = 35/310 (11%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + +RD +SW+ M+ G+            +++ +  G+ +D  T+  V+  C +
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H + +KS  +        L+DMY+KC  +D A ++F++M  R++V+WT M
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 231 I----------GANKFL---------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           I          GA K L         LDV+  T+++   A+ GS+D+ +++ D ++  N+
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 272 IS----WSAMIAAYGYHGQGKKALDLFPMMLSSRVL----------PNRITFVSLLYACS 317
            S     +A++  Y   G  + A  +F  M+   ++          P+  T   +L AC+
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
               +E G  +   +  +     D      +VDL  + G L  A +L+  M   KD   W
Sbjct: 444 SLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSW 501

Query: 378 GALLGACRIH 387
             ++    +H
Sbjct: 502 TVMIAGYGMH 511



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           +L++ T   V++ C   K    G+ +H I+  + + +D+ +   LV  YA C  + + R+
Sbjct: 96  ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 215 LFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +FD M  +++  W  M+        F   + L   +++   +    +SA E+FD++  ++
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VISW++MI+ Y  +G  ++ L ++  M+   +  +  T +S+L  C+++G +  G  + S
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 331 -SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            ++   F  R  +     ++D+  + G LD AL++ E M  E++   W +++  
Sbjct: 276 LAIKSSFERR--INFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/556 (41%), Positives = 320/556 (57%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VH+     G   +  V   L+ +Y+    +  A  LF+ M++ D V+++ ++ G+S  
Sbjct: 232 RCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVN 291

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +    F E +  G+  +S TL  +I         ++ + +H  VLKSG   +  V 
Sbjct: 292 GMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVS 351

Query: 197 AALVDMYAKCKVIDDARQ-------------------------------LFDQM------ 219
            A+  ++ +   ++ AR+                               LF+QM      
Sbjct: 352 TAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVR 411

Query: 220 PTRDLVTWTV-----------------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
           P    ++ T+                 +I       +V + TA+IDMYAKCGSI  AR I
Sbjct: 412 PNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRI 471

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M  KNV+SW+AMIA YG HGQG +AL L+  ML + +LP   TF+S+LYACSH GLV
Sbjct: 472 FNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLV 531

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGLWGALL 381
           EEG ++F SM DD+A+ P ++H TCMVDLLGRAG+L EA +LI          G+WGALL
Sbjct: 532 EEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALL 591

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC +HK+ DLA++A++ L E  P+N G+YVLLSN++ +  ++ + A +R     R+L K
Sbjct: 592 GACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVK 651

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG+T IE+ NK H F  GD  HPQSE IY  L  L+ K+  AGY P+T   L+DV+EE 
Sbjct: 652 TPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEE 711

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   +  HSEKLAIAFGL++T  GT IRI+KNLRVC DCH+  K +S +T+R+I+VRDA+
Sbjct: 712 KEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDAS 771

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 772 RFHHFRDGVCSCGDYW 787



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 165/384 (42%), Gaps = 62/384 (16%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +  VA+ L  +Y +   +  A  +F+ +   D+V W+ ++ G S         E+F   +
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMV 203

Query: 151 RCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G ++ D+ TL  V+ A  +  D+ MGR +H    K GL   + V   L+ +Y+KC  +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA-----------NKFLLDVILG--------------- 243
           + AR LFD M   DLV +  +I             N F   + LG               
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 244 ----------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                       TA+  ++ +   ++SAR+ FD M +K + SW+
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           AMI+ Y  +G  + A+ LF  M+   V PN IT  S L AC+  G +  G  L   + ++
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEE 443

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
             + P+V   T ++D+  + G + EA ++  +M   K+   W A++    +H     A  
Sbjct: 444 -DLEPNVYVMTALIDMYAKCGSISEARRIFNTMD-NKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 396 AAKSLLERQPQNPGHYVLLSNVYA 419
             K +L+     P     LS +YA
Sbjct: 502 LYKDMLDAH-LLPTSATFLSVLYA 524



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 79/185 (42%), Gaps = 14/185 (7%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +P    S+L +C  +  +   + +H  I       N+ V   L+ +YA   ++++A  +F
Sbjct: 413 NPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIF 472

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           N M  ++ VSW+ M+ G+          + +++ +   +   S T   V+ AC     + 
Sbjct: 473 NTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVE 532

Query: 176 MG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL--VTWT 228
            G      +  D  +  G++     C  +VD+  +   + +A +L  + P   +    W 
Sbjct: 533 EGWKVFRSMTDDYAINPGIEH----CTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWG 588

Query: 229 VMIGA 233
            ++GA
Sbjct: 589 ALLGA 593


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 331/556 (59%), Gaps = 56/556 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+VHA  V     ++L +AN L+ +Y    ++  +  +F+ M+ +D VSW+ ++  +++ 
Sbjct: 385 REVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQS 444

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           + +      FR   + G+++D   +  ++ AC   K I + + +H   +++GL +D  + 
Sbjct: 445 SRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILK 503

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------------- 230
             ++D+Y +C  +  A  +F+ +  +D+VTWT M                          
Sbjct: 504 NRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQ 563

Query: 231 ---------IGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                    +GA                    KF ++  + ++++DMY+ CGS++ A ++
Sbjct: 564 PDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKV 623

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD  + K+V+ W+AMI A G HG GK+A+ +F  ML + V P+ ++F++LLYACSH+ LV
Sbjct: 624 FDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLV 683

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG      M   + ++P  +HY C+VDLLGR+G+ +EA K I+SM +E    +W ALLG
Sbjct: 684 DEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLG 743

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIHKN +LA +A   LLE +P NPG+YVL+SNV+A  G+W +V +IR  MT + L+K 
Sbjct: 744 ACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKD 803

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG-YIPDTNFELHDVDEEV 501
           P  +WIE+ N +H F+  D +H  S+ I+  L  ++EKL   G Y+ DT+F LHDV EE 
Sbjct: 804 PACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEE 863

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K+  L+ HSE+LAI+FGLI+T  GT +RI KNLRVCGDCH F K VS +  R I+VRDAN
Sbjct: 864 KIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDAN 923

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF GG CSC D+W
Sbjct: 924 RFHHFSGGTCSCGDFW 939



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 116/481 (24%), Positives = 211/481 (43%), Gaps = 73/481 (15%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S++    +  L  C  + Q+   R++HA ++  GT  N I  N LL +YA    +  A  
Sbjct: 262 SMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFN-IQCNALLVMYARCGWVDSALR 320

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  + ++D +SW+ M+  + +   +    + F E ++ G   D   +  ++ A      
Sbjct: 321 VFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGR 380

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           ++ GR +H   +K  LD D  +   L+DMY KC  ++ + ++FD+M  +D V+WT +I  
Sbjct: 381 LINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIAC 440

Query: 234 -----------NKF------------------------------------------LLDV 240
                       KF                                          LLD+
Sbjct: 441 YAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDL 500

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           IL   +ID+Y +CG +  A  IF+ + +K++++W++M+  +  +G   +A+ LF  ML++
Sbjct: 501 ILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNA 560

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLD 359
            + P+ +  V +L A +    + +G  +   +    F V   V   + +VD+    G ++
Sbjct: 561 GIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAV--VSSLVDMYSGCGSMN 618

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
            ALK+ +     KD  LW A++ A  +H +   A    K +LE    +P H   L+ +YA
Sbjct: 619 YALKVFDEAKC-KDVVLWTAMINATGMHGHGKQAIYIFKRMLE-TGVSPDHVSFLALLYA 676

Query: 420 -NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD--STHPQSEEIYRMLVT 476
            +  +  D  K    M   + K  P   W E     H   V D      Q+EE Y+ + +
Sbjct: 677 CSHSKLVDEGKFYLDMMVSKYKLQP---WQE-----HYACVVDLLGRSGQTEEAYKFIKS 728

Query: 477 L 477
           +
Sbjct: 729 M 729



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 138/316 (43%), Gaps = 61/316 (19%)

Query: 71  RNIFQIRQVHAQIVAGGTLTN---LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           R + + RQ+HA  VA G L +     +A KLL++Y     L DAH LF+GM  R   SW+
Sbjct: 69  RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWN 128

Query: 128 VMVGGF---SKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
            ++G         + +  +   R      G   D  TL  V++AC    D   G  +H +
Sbjct: 129 ALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGL 188

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA---NKFLLD 239
            +KSGLD    V  ALV MYAKC ++D A ++F+ M   RD+ +W   I     N   L+
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLE 248

Query: 240 VI-------------------------------------------LGT-------AVIDM 249
            +                                            GT       A++ M
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLVM 308

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           YA+CG +DSA  +F  +  K+ ISW++M++ Y  +    +A+D F  M+ +   P+    
Sbjct: 309 YARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACI 368

Query: 310 VSLLYACSHTGLVEEG 325
           VSLL A  H G +  G
Sbjct: 369 VSLLSAVGHLGRLING 384


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/573 (39%), Positives = 311/573 (54%), Gaps = 80/573 (13%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           K  +  L SC  + +++Q H+QI+  G   +     +++   A+ K+             
Sbjct: 21  KLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKS------------- 67

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
                      G+ +     NC   +   +   +  + +T P +IRAC     I  G+ I
Sbjct: 68  -----------GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQI 116

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL--VTWTVMIGA----- 233
           H  VLK G   D F    L+ MY   + ++ AR++FD MP RD   V+W  MI A     
Sbjct: 117 HAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSN 176

Query: 234 -------------------NKFL------------------------------LDVILGT 244
                              +KF+                              LD  L T
Sbjct: 177 RLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLAT 236

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            VIDMY KCG ++ A E+F+ + QK + SW+ MI     HG+G+ A++LF  M    V P
Sbjct: 237 TVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAP 296

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           + ITFV++L AC+H+GLVEEG   F  M +   ++P ++H+ CMVDLLGRAG L+EA KL
Sbjct: 297 DGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKL 356

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I  M V  D G+ GAL+GACRIH N +L E   K ++E +P N G YVLL+N+YA+AGRW
Sbjct: 357 INEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRW 416

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           +DVAK+R LM  R +KK PG++ IE E+ + +F  G   HPQ++EIY  L  + E +   
Sbjct: 417 EDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSI 476

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+PDT+  LHD+DEE K   LY HSEKLAIAFGL+ T  G  +RI KNLR+C DCH   
Sbjct: 477 GYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQAS 536

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S +  R II+RD NRFHHF  G CSC+DYW
Sbjct: 537 KLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 325/557 (58%), Gaps = 37/557 (6%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD    IS L+ C N   +   + VH+  +       +  +N LL +Y+    L  A  +
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M ER+ VSW+ M+ G+++        +  ++  + G++LD   +  ++ AC     +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSL 368

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +HD +  + ++ + FVC AL+DMYAKC  ++ A  +F  M  +D+++W  MIG  
Sbjct: 369 DNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGEL 428

Query: 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                           N +  D  +  A++D+Y KCG +  AR 
Sbjct: 429 KPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD +  K+++SW+ MIA YG HG G +A+  F  M  + + P+ ++F+S+LYACSH+GL
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E+G R F  M +DF + P ++HY CMVDLL R G L +A + +E++ +  D  +WGALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALL 608

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
             CR + +++LAE  A+ + E +P+N G+YVLL+N+YA A +W++V ++R+ + ++ L+K
Sbjct: 609 CGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRK 668

Query: 442 IPGWTWIEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
            PG +WIE++ K++ F  G +S+HP S+ I  +L  +  K++  G+ P T + L + DE 
Sbjct: 669 NPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEM 728

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLA+AFGL+  P    IR+ KNLRVCGDCH   K +S  TRR I++RD+
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSCR +W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 143/310 (46%), Gaps = 35/310 (11%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + +RD +SW+ M+ G+            +++ +  G+ +D  T+  V+  C +
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H + +KS  +        L+DMY+KC  +D A ++F++M  R++V+WT M
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 231 I----------GANKFL---------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           I          GA K L         LDV+  T+++   A+ GS+D+ +++ D ++  N+
Sbjct: 324 IAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 272 IS----WSAMIAAYGYHGQGKKALDLFPMMLSSRVL----------PNRITFVSLLYACS 317
            S     +A++  Y   G  + A  +F  M+   ++          P+  T   +L AC+
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACA 443

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
               +E G  +   +  +     D      +VDL  + G L  A +L+  M   KD   W
Sbjct: 444 SLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSW 501

Query: 378 GALLGACRIH 387
             ++    +H
Sbjct: 502 TVMIAGYGMH 511



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           +L++ T   V++ C   K    G+ +H I+  + + +D  +   LV  YA C  + + R+
Sbjct: 96  ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRR 155

Query: 215 LFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +FD M  +++  W  M+        F   + L   +++   +    +SA E+FD++  ++
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRD 215

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VISW++MI+ Y  +G  ++ L ++  M+   +  +  T +S+L  C+++G +  G  + S
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 331 -SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            ++   F  R  +     ++D+  + G LD AL++ E M  E++   W +++  
Sbjct: 276 LAIKSSFERR--INFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 310/554 (55%), Gaps = 57/554 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H+     G  ++  V    + +Y+    +    ALF   ++ D V+++ M+ G++   
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           +       F+E +  G +L S TL  ++        +++   IH   LKS       V  
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVST 358

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDL--------------------------------- 224
           AL  +Y+K   I+ AR+LFD+ P + L                                 
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSP 418

Query: 225 --VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
             VT T ++ A                     F   + + TA+I MYAKCGSI  AR +F
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M +KN ++W+ MI+ YG HGQG++AL++F  ML+S + P  +TF+ +LYACSH GLV+
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG  +F+SM   +   P VKHY CMVD+LGRAG L  AL+ IE+MS+E    +W  LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGA 598

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CRIHK+ +LA   ++ L E  P N G++VLLSN+++    +   A +R    +R+L K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G+T IE+    H F+ GD +HPQ +EIY  L  L  K+  AGY P+T   LHDV+EE + 
Sbjct: 659 GYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERE 718

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             +  HSE+LAIAFGLIAT  GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRF 778

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 779 HHFKDGVCSCGDYW 792



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 167/378 (44%), Gaps = 54/378 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F IS+    R+    R +H Q V  G  + L++ + ++ +Y     + DA  +F+ M E+
Sbjct: 124 FAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           D++ W+ M+ G+ K   ++   + FR+ I     +LD+ TL  ++ A  + +++ +G  I
Sbjct: 184 DTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI 243

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
           H +  K+G     +V    + +Y+KC  I     LF +    D+V +  MI         
Sbjct: 244 HSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGET 303

Query: 232 -------------GA-----------------------------NKFLLDVILGTAVIDM 249
                        GA                             + FL    + TA+  +
Sbjct: 304 ELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTV 363

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+K   I+SAR++FD   +K++ SW+AMI+ Y  +G  + A+ LF  M  S   PN +T 
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTI 423

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
             +L AC+  G +  G +    +         +   T ++ +  + G + EA +L + M+
Sbjct: 424 TCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT 482

Query: 370 VEKDEGLWGALLGACRIH 387
            +K+E  W  ++    +H
Sbjct: 483 -KKNEVTWNTMISGYGLH 499



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 152/370 (41%), Gaps = 65/370 (17%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           +I  + Q HAQI+  G   ++ +  KL    +   A+  A  +F  ++  D   ++V++ 
Sbjct: 32  SISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR 91

Query: 132 GFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           GFS      +    F    +   ++ +S T  F I A    +D   GR+IH   +  G D
Sbjct: 92  GFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD 151

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK--------------- 235
            +  + + +V MY K   ++DAR++FD+MP +D + W  MI   +               
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 236 -----------FLLDVI----------LG-------------------TAVIDMYAKCGS 255
                       LLD++          LG                   T  I +Y+KCG 
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I     +F   R+ ++++++AMI  Y  +G+ + +L LF  ++ S       T VSL+  
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331

Query: 316 CSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
             H  L+    G  L S+     +V       T +  +  +   ++ A KL +  S EK 
Sbjct: 332 SGHLMLIYAIHGYCLKSNFLSHASVS------TALTTVYSKLNEIESARKLFDE-SPEKS 384

Query: 374 EGLWGALLGA 383
              W A++  
Sbjct: 385 LPSWNAMISG 394


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/553 (39%), Positives = 328/553 (59%), Gaps = 49/553 (8%)

Query: 27  AIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAG 86
           A+AL   G++   + PR+ M      +FT +   K  ++S      + + +++HA I+  
Sbjct: 144 ALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRH 203

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   ++ V   L+ +YA    ++ A A+F+ M  ++ VSWS M+  ++K        E F
Sbjct: 204 GYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELF 263

Query: 147 REFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           RE +        +S T+  V++AC     +  G+LIH  +L+ GLD              
Sbjct: 264 REMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDS------------- 310

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                           +L VI  +A+I MYA+CG ++S + IFD
Sbjct: 311 --------------------------------ILPVI--SALITMYARCGKLESGQLIFD 336

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           RM +K+V+ W+++I++YG HG G+KA+ +F  M+     P+ I+F+S+L ACSHTGLVEE
Sbjct: 337 RMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEE 396

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G +LF SM  +  ++P V+HY CMVDLLGRA RLDEA K+IE + +E    +WG+LLGAC
Sbjct: 397 GKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGAC 456

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           RIH +V+LAE A+K L + +P N G+YVLL+++YA A  W +V +++ L+  R L+K+PG
Sbjct: 457 RIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPG 516

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            +WIEV  KI+ F+  D  +PQ E+++ +LV LS +++  GY P T   L+D+D+E K  
Sbjct: 517 RSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKER 576

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            +  HSEKLA+AFGLI T +G  IRI KNLR+C DCHS  K +S    R I+VRD NRFH
Sbjct: 577 IVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFH 636

Query: 565 HFEGGACSCRDYW 577
           HF+ G CSC DYW
Sbjct: 637 HFKDGVCSCGDYW 649



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 122/268 (45%), Gaps = 62/268 (23%)

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------- 230
           +H +++  G D D F+   L++M+++   +D+AR++FD+   R +  W  +         
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150

Query: 231 ---------------IGANKFLLDVILGTAV----------------------------- 246
                          + +++F    +L   V                             
Sbjct: 151 GNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVH 210

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSS 300
                +DMYA+ G +  A  +FD M  KNV+SWSAMIA Y  +G+  +AL+LF  MML++
Sbjct: 211 VMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNT 270

Query: 301 R-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
              +PN +T VS+L AC+    +E+G +L  +      +   +   + ++ +  R G+L+
Sbjct: 271 HDSVPNSVTMVSVLQACAAFAALEQG-KLIHAYILRRGLDSILPVISALITMYARCGKLE 329

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIH 387
               + + M  +KD  LW +L+ +  +H
Sbjct: 330 SGQLIFDRMH-KKDVVLWNSLISSYGLH 356



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 94/193 (48%), Gaps = 9/193 (4%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D  L T +I+M+++  ++D+AR++FD+ R++ +  W+A+  A    G+G   L+L+P
Sbjct: 100 FDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYP 159

Query: 296 MMLSSRVLPNRITFVSLLYACSHT----GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            M    V  +R T+  LL AC  +      +++G  + + +         V   T ++D+
Sbjct: 160 RMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRH-GYGAHVHVMTTLMDM 218

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGAC--RIHKNVDLAEMAAKSLLERQPQNPG 409
             R G +  A  + + M V K+   W A++ AC  +  K  +  E+  + +L      P 
Sbjct: 219 YARFGCVSYASAVFDEMPV-KNVVSWSAMI-ACYAKNGKPYEALELFREMMLNTHDSVPN 276

Query: 410 HYVLLSNVYANAG 422
              ++S + A A 
Sbjct: 277 SVTMVSVLQACAA 289


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 316/571 (55%), Gaps = 58/571 (10%)

Query: 61  KFFISSLLSCR----NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           ++ I SLLS      N+   + +HA +   G  T++ V+N L+ +Y  +  + D   L+ 
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYE 474

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M +RD +SW+  + G      +      F   +  G   + YT   ++ +C    D+  
Sbjct: 475 SMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHY 534

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---- 232
           GR +H  ++K+ LD + FVC AL+DMYAKC  ++DA   F+++  RDL TWTV+I     
Sbjct: 535 GRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQ 594

Query: 233 --------------------ANKFLL------------------------------DVIL 242
                                N+F L                              D+ +
Sbjct: 595 TNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFV 654

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G+A++DMYAKCG ++ A  +F+ + +++ I+W+ +I  Y  +GQG KAL  F MML   +
Sbjct: 655 GSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGI 714

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +TF  +L ACSH GLVEEG   F+SM+ DF + P V H  CMVD+LGR G+ DE  
Sbjct: 715 SPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELE 774

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             I+ M + ++  +W  +LGA ++H N+ L E AA  L E QP+    Y+LLSN++A  G
Sbjct: 775 DFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEG 834

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW DV ++R LM+ + +KK PG +W+E   ++H F   D +HPQ +EI+  L  L  +L 
Sbjct: 835 RWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELA 894

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
              Y+P T + LH+V E  K  NL  HSE+LA+ F LI+T     IRI KNLR+C DCH 
Sbjct: 895 SIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHD 954

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
            +KH+S+IT + I+VRD  RFHHF+ GACSC
Sbjct: 955 VMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 170/380 (44%), Gaps = 59/380 (15%)

Query: 61  KFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           K++ S L  C   R++   + +H  IV      +  +   L+ +YA  +    A  +   
Sbjct: 113 KYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAK 172

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M +RD VSW+ ++ G        +    F+E    G+  + +TL   ++AC     + +G
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
           + +H    K GL +D FV +ALVD+YAKC  I+ A ++F  MP ++ VTW V++      
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 234 --------------------NKFLLDVIL------------------------------G 243
                               N+F L  +L                              G
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
             ++DMY+KCG    A  +F  +++ +++ WSA+I      GQ ++++ LF +M     L
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN+ T  SLL A ++TG ++ G  + + +W  +    DV     +V +  + G + +  K
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVW-KYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 364 LIESMSVEKDEGLWGALLGA 383
           L ESM V++D   W A L  
Sbjct: 472 LYESM-VDRDLISWNAYLSG 490


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 313/572 (54%), Gaps = 86/572 (15%)

Query: 91   NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            N++  N ++  Y  +  L +A  LF  M  ++S SW+ M+ GF +  +     E   E  
Sbjct: 488  NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELH 547

Query: 151  RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK--- 207
            R G      +    + AC +  D+ +GR+IH + +K+G   + +V   L+ MYAKC    
Sbjct: 548  RSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 607

Query: 208  ----------------------------VIDDARQLFDQMPTRDLVTWTVMI------GA 233
                                        ++DDAR +F++MP RD+V+WT +I      G 
Sbjct: 608  DGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGH 667

Query: 234  NKFLLDVIL------------------------------------------------GTA 245
             +  LD+ L                                                G +
Sbjct: 668  GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNS 727

Query: 246  VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
            +I MY KCG  D    +F+ M + ++I+W+A++     +G GK+A+ +F  M    +LP+
Sbjct: 728  LITMYFKCGYEDGFC-VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPD 786

Query: 306  RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +++F+ +L ACSH GLV+EG   F+SM   + + P V HYTCMVDLLGRAG L EA  LI
Sbjct: 787  QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI 846

Query: 366  ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            E+M V+ D  +W ALLGACRIH+NV+L +  A+ L +        YVLLSN++A+ G W 
Sbjct: 847  ENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWD 906

Query: 426  DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
             VA+IR LM  + L K PG +WI+V+NK+H F  GD TH Q EEIY  L          G
Sbjct: 907  KVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATG 966

Query: 486  YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
            Y+PDTNF LHDV+EE K   L  HSEKLA+ FG+++TP G+ I+I+KNLR+CGDCH+F+K
Sbjct: 967  YMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMK 1026

Query: 546  HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             +S +T R II+RD NRFHHF  G+CSC DYW
Sbjct: 1027 FMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 169/379 (44%), Gaps = 53/379 (13%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  Y     +++A  LF+ M ER+SVSW VM+ G+  ++D+   ++ F +  
Sbjct: 294 NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMC 353

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R   + D      V+ A     D+ +   +  I +K+G + D  V +A+++ Y +   +D
Sbjct: 354 RTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLD 413

Query: 211 DARQLFDQMPTRDLVTWTVMIG--ANKFLLD-------------VILGTAVIDMYAKCGS 255
            A   F+ MP R+  +WT MI   A    LD             V   TA++  YA+ G 
Sbjct: 414 LAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGR 473

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML----------------- 298
           I  AR IFD +   NV++W+A+IA Y  +G  K+A DLF  M                  
Sbjct: 474 IQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQN 533

Query: 299 --------------SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
                          S  +P+  +F S L AC++ G VE G R+  S+      + +   
Sbjct: 534 EESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFNSYV 592

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
              ++ +  + G +++   +  ++ V KD   W +L+     +  +D     A+ + E+ 
Sbjct: 593 MNGLISMYAKCGNVEDGSHVFRTIRV-KDTVSWNSLISGLSENYMLD----DARVVFEKM 647

Query: 405 PQ-NPGHYVLLSNVYANAG 422
           P+ +   +  + + Y  AG
Sbjct: 648 PKRDVVSWTAIISAYVQAG 666



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 148/330 (44%), Gaps = 39/330 (11%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           + +A  +FN M +RD VSW+ M+ G+S+          F  F+  G  + ++T+     A
Sbjct: 187 VEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFV--GKNIRTWTILLTGYA 244

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
              R +          V +S  + +     A++  Y +   + +AR+LFD+MP +++ +W
Sbjct: 245 KEGRIEEARE------VFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASW 298

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                            +V+  Y  C  +  ARE+FD+M ++N +SW  MI+ Y +    
Sbjct: 299 ----------------NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDY 342

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVK 343
            +A D+F  M  +   P++  FV +L A   TGL  + L L  S+    A++     DV 
Sbjct: 343 WEAWDVFVKMCRTVARPDQSIFVVVLSAI--TGL--DDLELIGSL-RPIAIKTGYEGDVV 397

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
             + +++   R G LD A+   E+M  E++E  W  ++ A      +D     A  L ER
Sbjct: 398 VGSAILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAAFAQCGRLD----DAIQLYER 452

Query: 404 QP-QNPGHYVLLSNVYANAGRWQDVAKIRD 432
            P Q       +   YA  GR Q    I D
Sbjct: 453 VPEQTVATKTAMMTAYAQVGRIQKARLIFD 482



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 63/291 (21%)

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------NKFLLDVILG- 243
           F C   +    +   +++AR++F++M  RD+V+W  MI            + L D  +G 
Sbjct: 172 FQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGK 231

Query: 244 -----TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                T ++  YAK G I+ ARE+F+ M ++NV+SW+AMI+ Y  +G  K A  LF  M 
Sbjct: 232 NIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMP 291

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM------------------------WD 334
              V     ++ S++    H   + E   LF  M                        WD
Sbjct: 292 EKNV----ASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWD 347

Query: 335 DF------AVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEGLWGALL 381
            F        RPD    +  V +L     LD+ L+LI S+         E D  +  A+L
Sbjct: 348 VFVKMCRTVARPD---QSIFVVVLSAITGLDD-LELIGSLRPIAIKTGYEGDVVVGSAIL 403

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
            A   + ++DLA    +++ ER   N   +  +   +A  GR  D  ++ +
Sbjct: 404 NAYTRNGSLDLAMHFFETMPER---NEYSWTTMIAAFAQCGRLDDAIQLYE 451



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/347 (20%), Positives = 141/347 (40%), Gaps = 72/347 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++  N ++  Y+ +  + +A  LF+    ++  +W++++ G++K        E  RE  
Sbjct: 201 DVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGR----IEEAREVF 256

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
               + +  +   +I       D+   R + D + +  +        ++V  Y  C  + 
Sbjct: 257 ESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVA----SWNSVVTGYCHCYRMS 312

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLD-----------------------VILGTAV- 246
           +AR+LFDQMP R+ V+W VMI     + D                       V++ +A+ 
Sbjct: 313 EARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAIT 372

Query: 247 ------------------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                         ++ Y + GS+D A   F+ M ++N  SW+ 
Sbjct: 373 GLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTT 432

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MIAA+   G+   A+ L+  +    V     T  +++ A +  G +++   +F     D 
Sbjct: 433 MIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIF-----DE 483

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            + P+V  +  ++    + G L EA  L + M V K+   W A++  
Sbjct: 484 ILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPV-KNSASWAAMIAG 529


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/553 (39%), Positives = 314/553 (56%), Gaps = 55/553 (9%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           H+ ++A G   ++ V   L+ +Y+       A  +F+ M  R  +SW+ M+ G+ +    
Sbjct: 269 HSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMI 328

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
              +  FR  ++ G   DS TL  +IR C    D+  GR++H  +++  L+    +  A+
Sbjct: 329 PESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAI 388

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IGANK 235
           VDMY+KC  I  A  +F +M  ++++TWT M                        + AN 
Sbjct: 389 VDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANS 448

Query: 236 ------------------------------FLLDVILGTAVIDMYAKCGSIDSAREIFD- 264
                                         +  D ++ +A+IDMYAKCG I SA ++F+ 
Sbjct: 449 VTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNN 508

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
               K+VI  ++MI  YG HG G+ AL ++  M+  R+ PN+ TFVSLL ACSH+GLVEE
Sbjct: 509 EFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEE 568

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G  LF SM  D  VRP  KHY C+VDL  RAGRL+EA +L++ M  +    +  ALL  C
Sbjct: 569 GKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGC 628

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           R HKN ++    A  L+     N G YV+LSN+YA A +W+ V  IR LM  + +KKIPG
Sbjct: 629 RTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPG 688

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           ++ IEV NK++ F   D +HP   +IY++L  L  ++E  GYIPDT+  L DV+E +KV 
Sbjct: 689 YSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVK 748

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L+ HSE+LAIAFGL++TP G+ I+I KNLRVC DCH+  K++S I +R IIVRDANRFH
Sbjct: 749 LLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFH 808

Query: 565 HFEGGACSCRDYW 577
           HF  G CSC D+W
Sbjct: 809 HFVNGKCSCNDFW 821



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 179/415 (43%), Gaps = 65/415 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R  H  +  G ++ N +V    L          DA  +F+GM E+D V W+ ++GG+ + 
Sbjct: 174 RGFHLHLYVGSSMVNFLVKRGYL---------ADAQKVFDGMPEKDVVCWNSIIGGYVQK 224

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    + F E I  G++    T+  +++AC       +G   H  VL  G+  D FV 
Sbjct: 225 GLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVL 284

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            +LVDMY+       A  +FD M +R L++W  MI                         
Sbjct: 285 TSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSG 344

Query: 234 --NKFLLDVILGTA-----------------------------VIDMYAKCGSIDSAREI 262
             +  L+ +I G +                             ++DMY+KCG+I  A  +
Sbjct: 345 FDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIV 404

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F RM +KNVI+W+AM+     +G  + AL LF  M   +V  N +T VSL++ C+H G +
Sbjct: 405 FGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSL 464

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            +G R   + +       D    + ++D+  + G++  A KL  +    KD  L  +++ 
Sbjct: 465 TKG-RTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIM 523

Query: 383 ACRIHKNVDLA-EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
              +H +   A  + ++ + ER   N   +V L    +++G  ++   +   M R
Sbjct: 524 GYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMER 578



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 177/409 (43%), Gaps = 72/409 (17%)

Query: 39  PMNPRVPMQMGPDCQFTRSVDPKFF------ISSLLS--CRNIFQIRQVHAQIVAGGTLT 90
           P N R      P   F       FF       SSLL      +  ++ +HAQI+     T
Sbjct: 18  PCNCRPIYNAAPSSTFVSVHHAPFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVST 77

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
              +A KL+ +Y+    L  A  +F+     ++   + M+ GF +    +     FR   
Sbjct: 78  ESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMG 137

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
            C ++++SYT  F ++AC D  D  +G  I    ++ G  +  +V +++V+   K   + 
Sbjct: 138 SCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLA 197

Query: 211 DARQLFDQMPTRDLVTWTVMIG-------------------------------------- 232
           DA+++FD MP +D+V W  +IG                                      
Sbjct: 198 DAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACG 257

Query: 233 ----------ANKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                     A+ ++L      DV + T+++DMY+  G   SA  +FD M  +++ISW+A
Sbjct: 258 QSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNA 317

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MI+ Y  +G   ++  LF  ++ S    +  T VSL+  CS T  +E G  L S +    
Sbjct: 318 MISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCI---- 373

Query: 337 AVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +R +++ +    T +VD+  + G + +A  +   M  +K+   W A+L
Sbjct: 374 -IRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAML 420



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 10/149 (6%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           +  L   +I +Y+  G +  AR +FD+         +AMIA +  + Q  +   LF MM 
Sbjct: 78  ESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMG 137

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGR 354
           S  +  N  T +  L AC+     E G+ +  +     AVR     +    + MV+ L +
Sbjct: 138 SCDIEINSYTCMFALKACTDLLDDEVGMEIIRA-----AVRRGFHLHLYVGSSMVNFLVK 192

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGA 383
            G L +A K+ + M  EKD   W +++G 
Sbjct: 193 RGYLADAQKVFDGMP-EKDVVCWNSIIGG 220


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/552 (38%), Positives = 316/552 (57%), Gaps = 54/552 (9%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           HAQI+  G   + I +N L+ +Y+    +  A  LF+ M  R  VSW+ MVG  ++  D 
Sbjct: 70  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 129

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
                 F +  + G     +T+  V+ AC  +  +   + +H   LK+ LD + FV  AL
Sbjct: 130 EKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTAL 189

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NK 235
           +D+YAKC ++ DA  +F+ MP R  VTW+ M+                          N+
Sbjct: 190 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 249

Query: 236 FLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFDR 265
           F +                              ++ + +++IDMYAKCG I+ A  +F  
Sbjct: 250 FTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSS 309

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           + +KNV+ W+A+++ +  H +  +A+  F  M    + PN IT++S+L ACSH GLVE+G
Sbjct: 310 VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKG 369

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            + F  M     V P+V HY+CMVD+LGRAG L EA   I+ M  +    +WG+LL +CR
Sbjct: 370 RKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCR 429

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           I++N++LAE+AAK L E +P N G++VLLSN+YA   RW++VA+ R+L+   + KK  G 
Sbjct: 430 IYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGK 489

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           +WIE+++K+H F VG+  HP+  EIY  L  L  +++  GY   T  +LHDV+E  K   
Sbjct: 490 SWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQEL 549

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHH 565
           L  HSEKLA+ FG++  P G  IRIMKNLR+CGDCHSF+K  S+IT R IIVRD NRFHH
Sbjct: 550 LRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHH 609

Query: 566 FEGGACSCRDYW 577
           F+ G CSC ++W
Sbjct: 610 FKNGYCSCGEFW 621



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 65/335 (19%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  ++++    +  + G   H  +++ GL  D      L++MY+KC +++ AR+LFD+MP
Sbjct: 50  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 109

Query: 221 TRDLVTWTVMIGAN---------------------------------------------- 234
            R LV+W  M+G++                                              
Sbjct: 110 VRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ 169

Query: 235 ------KFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                 K  LD  V +GTA++D+YAKCG +  A  +F+ M +++ ++WS+M+A Y  +  
Sbjct: 170 LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNEL 229

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            ++AL LF    +  +  N+ T  S L AC+    + EG +   ++     +  ++   +
Sbjct: 230 YEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVIS 288

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            ++D+  + G ++EA  +  S+  EK+  LW A+L     H    +  + A    E+  Q
Sbjct: 289 SLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRH----VRSLEAMIYFEKMQQ 343

Query: 407 -----NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
                N   Y+ + +  ++ G  +   K  DLM R
Sbjct: 344 MGICPNDITYISVLSACSHLGLVEKGRKYFDLMIR 378


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/577 (37%), Positives = 324/577 (56%), Gaps = 58/577 (10%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            D +F+ + L  C   + + Q R VHA I+      ++++ N LL +YA   +L +A  +
Sbjct: 58  ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV 117

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M +RD V+W+ ++ G+S+     +    F + +R G   + +TL  VI+A    +  
Sbjct: 118 FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 177

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H   +K G D +  V +AL+D+Y +  ++DDA+ +FD + +R+ V+W  +I   
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGH 237

Query: 232 ----GANKFL-----------------------------------------------LDV 240
               G  K L                                               L  
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 297

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
             G  ++DMYAK GSI  AR+IFDR+ +++V+SW++++ AY  HG GK+A+  F  M   
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + PN I+F+S+L ACSH+GL++EG   +  M  D  + P+  HY  +VDLLGRAG L+ 
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNR 416

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           AL+ IE M +E    +W ALL ACR+HKN +L   AA+ + E  P +PG +V+L N+YA+
Sbjct: 417 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 476

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
            GRW D A++R  M    +KK P  +W+E+EN IH F   D  HPQ EEI R    +  K
Sbjct: 477 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 536

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT+  +  VD++ +  NL  HSEK+A+AF L+ TP G+ I I KN+RVCGDC
Sbjct: 537 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 596

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+ IK  S +  R IIVRD NRFHHF+ G CSC+DYW
Sbjct: 597 HTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/555 (40%), Positives = 320/555 (57%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+VH QI   G  +++ V N L+ +YA    +  A+A+F  + +R  VSW+ ++ G+++ 
Sbjct: 193 RRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQN 252

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              I     F E  +  ++ D   L  V+RA  D +D+  G+ IH  V+K GL+ +  + 
Sbjct: 253 GQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLL 312

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDL-------------------------------- 224
            +L  +YAKC  +  AR  F+Q+    L                                
Sbjct: 313 ISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIR 372

Query: 225 ---VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
              +T T  I A                   ++F  DVI+ T++ID YAKCGS+D AR +
Sbjct: 373 PDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFV 432

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDR+  K+V+ WSAM+  YG HGQG++++ LF  M  + V PN +TFV LL AC ++GLV
Sbjct: 433 FDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLV 492

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG  LF  M  D+ + P  +HY C+VDLLGRAG LD A   + +M +E    +WGALL 
Sbjct: 493 EEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLS 551

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC+IH++V L E AA+ L    P N GHYV LSN+YA++  W  VAK+R LM  + L K 
Sbjct: 552 ACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKH 611

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G++ IE+  K+  F  GD THP+S+EI+  +  L  +L+ AG++P T   LHD++ E  
Sbjct: 612 LGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEET 671

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L +HSE+LAIA+GLI+TP GT +RI KNLR C +CH+ IK +S +  R I+VRDA R
Sbjct: 672 EETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACR 731

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ GACSC DYW
Sbjct: 732 FHHFKDGACSCGDYW 746



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 162/390 (41%), Gaps = 45/390 (11%)

Query: 14  SAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNI 73
           ++ L+F  +  ++++ L  H +               DC  +     KF+ S +    + 
Sbjct: 40  ASTLKFLETHYSSSLNLTTHFNNNKD-----------DCNESTFKPDKFYASLIDDSIHK 88

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
             + Q++A+++  G      +  KL+   +    ++ A  LF+   + D   W+ +V  +
Sbjct: 89  THLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCY 148

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           S+   F +  E +       +  D ++ P V++AC     + MGR +H  + + G + D 
Sbjct: 149 SRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDV 208

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           FV   LV +YAKC  I  A  +F ++  R +V+W                T++I  YA+ 
Sbjct: 209 FVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSW----------------TSIISGYAQN 252

Query: 254 GSIDSAREIFDRMRQKNV-ISWSAMIAAYGYHG------QGKKALDLFPMMLSSRVLPNR 306
           G    A  IF  MR+ NV   W A+++    +        GK        M         
Sbjct: 253 GQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLL 312

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL---K 363
           I+  SL   C H  +     RLF +  ++    P +  +  M+    + G  +EA+   +
Sbjct: 313 ISLTSLYAKCGHVMVA----RLFFNQVEN----PSLIFWNAMISGYVKNGYAEEAIELFR 364

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           L++S ++  D     + + AC    +++LA
Sbjct: 365 LMKSKNIRPDSITVTSSIAACAQIGSLELA 394


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 327/574 (56%), Gaps = 63/574 (10%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F + +  C NI ++   +Q+H Q++  G+  +L +   L+  Y+    + DA  LF  M 
Sbjct: 297 FATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMH 356

Query: 120 E-RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             ++ VSW+ ++ G+ +          F +  R G++ + +T   ++ A       V   
Sbjct: 357 GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA----NAAVSPS 412

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
            IH +V+K+  +    V  AL D Y+K    ++A ++F+ +  +D+V W+ M+       
Sbjct: 413 QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMG 472

Query: 234 -------------------NKFLLDVILG------------------------------- 243
                              N+F    +L                                
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS 532

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           +A++ MYAK G+I+SA E+F R   ++++SW++MI+ Y  HG GKK+L +F  M S  + 
Sbjct: 533 SALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLE 592

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            + ITF+ ++ AC+H GLV EG R F  M  D+ + P ++HY+CMVDL  RAG L++A+ 
Sbjct: 593 LDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMD 652

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           LI  M       +W  LL ACR+H NV L E+AA+ L+  QPQ+   YVLLSN+YA AG 
Sbjct: 653 LINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGN 712

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           WQ+ AK+R LM  +++KK  G++WIEV+NK   F  GD +HPQS+ IY  L  LS +L+ 
Sbjct: 713 WQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKD 772

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           AGY PDT + LHDV+EE K   L  HSE+LAIAFGLIATP GT I+I+KNLRVCGDCH+ 
Sbjct: 773 AGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTV 832

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IK +S I  R I+VRD+NRFHHF+GG+CSC DYW
Sbjct: 833 IKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 170/366 (46%), Gaps = 62/366 (16%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVH  ++  G  + + V N ++ +Y+    ++DA A+F+ M+ R++VSW+ M+ GF    
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
             +  FE F      G++L       VI+ C + K++   + +H  V+K+G D D  +  
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT 333

Query: 198 ALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA----------------------- 233
           AL+  Y+KC  IDDA +LF  M   +++V+WT +I                         
Sbjct: 334 ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVR 393

Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
            N F    IL                          GTA+ D Y+K G  + A +IF+ +
Sbjct: 394 PNHFTYSTILTANAAVSPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELI 453

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH-TGLVEEG 325
            +K++++WSAM++ Y   G  + A+ +F  +    V PN  TF S+L AC+  T  VE+G
Sbjct: 454 DEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQG 513

Query: 326 LRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +  S      +++    +  C    +V +  + G ++ A ++ +   V++D   W +++
Sbjct: 514 KQFHSC-----SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKR-QVDRDLVSWNSMI 567

Query: 382 GACRIH 387
                H
Sbjct: 568 SGYAQH 573



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 159/362 (43%), Gaps = 61/362 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH Q +  G + ++ V   L+ +Y   +++ D   +F+ M+ ++ VSW+ ++ G+ + 
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  + F +    G++ + +T   V+        +  G  +H +V+KSGLD   FV 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
            ++V+MY+K  ++ DA+ +FD M  R+ V+W  MI                         
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291

Query: 233 ---------------------ANKFLLDVILGTAVIDMYAK---------CGSIDSAREI 262
                                A +    VI   +  D+  K         C  ID A ++
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 263 FDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F  M   +NV+SW+A+I+ Y  +G+  +A++LF  M    V PN  T+ ++L A +    
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP 411

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +    +  + +++    P V   T + D   + G  +EA K+ E +  EKD   W A+L
Sbjct: 412 SQIHALVVKTNYEN---SPSVG--TALSDSYSKIGDANEAAKIFELID-EKDIVAWSAML 465

Query: 382 GA 383
             
Sbjct: 466 SG 467



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 139/340 (40%), Gaps = 65/340 (19%)

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
           +N F   R   R G   D  +L  V++ C    D ++G+ +H   +K G   D  V  +L
Sbjct: 77  LNLFLGLR---RSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSL 133

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NK 235
           VDMY K + ++D  ++FD+M  +++V+WT ++                          N 
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193

Query: 236 FLLDVIL------------------------------GTAVIDMYAKCGSIDSAREIFDR 265
           F    +L                              G ++++MY+K   +  A+ +FD 
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  +N +SW++MIA +  +G   +A +LF  M    V   +  F +++  C++   +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 326 LRLFSSM---WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            +L   +     DF    D+   T ++    +   +D+A KL   M   ++   W A++ 
Sbjct: 314 KQLHCQVIKNGSDF----DLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
               +   D A M     + R+   P H+   + + ANA 
Sbjct: 370 GYVQNGRTDRA-MNLFCQMRREGVRPNHFTYSTILTANAA 408



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 12/212 (5%)

Query: 58  VDP-KFFISSLLSC-----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           V+P +F  SS+L+       ++ Q +Q H+  +  G    L V++ L+ +YA    +  A
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 548

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           + +F    +RD VSW+ M+ G+++        + F E     ++LD  T   VI AC   
Sbjct: 549 NEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 608

Query: 172 KDIVMGRLIHDIVLKSG---LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-W 227
             +  G+   D+++K       ++ + C  +VD+Y++  +++ A  L ++MP     T W
Sbjct: 609 GLVNEGQRYFDLMVKDYHIVPTMEHYSC--MVDLYSRAGMLEKAMDLINKMPFPAGATIW 666

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
             ++ A +  L+V LG    +        DSA
Sbjct: 667 RTLLAACRVHLNVQLGELAAEKLISLQPQDSA 698


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/552 (38%), Positives = 316/552 (57%), Gaps = 54/552 (9%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           HAQI+  G   + I +N L+ +Y+    +  A  LF+ M  R  VSW+ MVG  ++  D 
Sbjct: 43  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDC 102

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
                 F +  + G     +T+  V+ AC  +  +   + +H   LK+ LD + FV  AL
Sbjct: 103 EKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTAL 162

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NK 235
           +D+YAKC ++ DA  +F+ MP R  VTW+ M+                          N+
Sbjct: 163 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 222

Query: 236 FLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFDR 265
           F +                              ++ + +++IDMYAKCG I+ A  +F  
Sbjct: 223 FTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSS 282

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           + +KNV+ W+A+++ +  H +  +A+  F  M    + PN IT++S+L ACSH GLVE+G
Sbjct: 283 VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKG 342

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            + F  M     V P+V HY+CMVD+LGRAG L EA   I+ M  +    +WG+LL +CR
Sbjct: 343 RKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCR 402

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           I++N++LAE+AAK L E +P N G++VLLSN+YA   RW++VA+ R+L+   + KK  G 
Sbjct: 403 IYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGK 462

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           +WIE+++K+H F VG+  HP+  EIY  L  L  +++  GY   T  +LHDV+E  K   
Sbjct: 463 SWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQEL 522

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHH 565
           L  HSEKLA+ FG++  P G  IRIMKNLR+CGDCHSF+K  S+IT R IIVRD NRFHH
Sbjct: 523 LRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHH 582

Query: 566 FEGGACSCRDYW 577
           F+ G CSC ++W
Sbjct: 583 FKNGYCSCGEFW 594



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 65/335 (19%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  ++++    +  + G   H  +++ GL  D      L++MY+KC +++ AR+LFD+MP
Sbjct: 23  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 82

Query: 221 TRDLVTWTVMIGAN---------------------------------------------- 234
            R LV+W  M+G++                                              
Sbjct: 83  VRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQ 142

Query: 235 ------KFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                 K  LD  V +GTA++D+YAKCG +  A  +F+ M +++ ++WS+M+A Y  +  
Sbjct: 143 LHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNEL 202

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            ++AL LF    +  +  N+ T  S L AC+    + EG +   ++     +  ++   +
Sbjct: 203 YEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEG-KQVQAVSCKTGIGSNIFVIS 261

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            ++D+  + G ++EA  +  S+  EK+  LW A+L     H    +  + A    E+  Q
Sbjct: 262 SLIDMYAKCGIIEEAYTVFSSVE-EKNVVLWNAILSGFSRH----VRSLEAMIYFEKMQQ 316

Query: 407 -----NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
                N   Y+ + +  ++ G  +   K  DLM R
Sbjct: 317 MGICPNDITYISVLSACSHLGLVEKGRKYFDLMIR 351


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/604 (37%), Positives = 323/604 (53%), Gaps = 87/604 (14%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGM 118
           K  +  L SC  + +++Q H+QI+  G   +     +++   A+ K+  L  A  +F+ +
Sbjct: 21  KLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKI 80

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
              D+  ++ +  G+ +     NC   +   +   +  + +T P +IRAC     I  G+
Sbjct: 81  PHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGK 140

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMY-------------------------------AKCK 207
            IH  VLK G   D F    L+ MY                               ++  
Sbjct: 141 QIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWG 200

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIGA------------------------NKFL------ 237
            +D AR++F+ MP R+ V+W  MI A                        +KF+      
Sbjct: 201 FVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLS 260

Query: 238 ------------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                   LD  L T VIDMY KCG ++ A E+F+ + QK + S
Sbjct: 261 ACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISS 320

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+ MI     HG+G+ A++LF  M    V P+ ITFV++L AC+H+GLVEEG   F  M 
Sbjct: 321 WNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMT 380

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +   ++P ++H+ CMVDLLGRAG L+EA KLI  M V  D G+ GAL+GACRIH N +L 
Sbjct: 381 EVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELG 440

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E   K ++E +P N G YVLL+N+YA+AGRW+DVAK+R LM  R +KK PG++ IE E+ 
Sbjct: 441 EQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESG 500

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           + +F  G   HPQ++EIY  L  + E +   GY+PDT+  LHD+DEE K   LY HSEKL
Sbjct: 501 VDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKL 560

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAFGL+ T  G  +RI KNLR+C DCH   K +S +  R II+RD NRFHHF  G CSC
Sbjct: 561 AIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSC 620

Query: 574 RDYW 577
           +DYW
Sbjct: 621 KDYW 624


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 324/557 (58%), Gaps = 37/557 (6%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD    IS L+ C     +   + VH+  +       +  +N LL +Y+    L  A  +
Sbjct: 111 VDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 170

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M ER+ VSW+ M+ G+++           ++  + G++LD   +  ++ AC     +
Sbjct: 171 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 230

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +HD +  + +  + FVC AL+DMYAKC  ++ A  +F  M  +D+++W  M+G  
Sbjct: 231 DNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGEL 290

Query: 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                           N +  D  +  A++D+Y KCG +  AR 
Sbjct: 291 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 350

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD +  K+++SW+ MIA YG HG G +A+  F  M  + + P+ ++F+S+LYACSH+GL
Sbjct: 351 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 410

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E+G R F  M +DF + P ++HY CMVDLL R G L +A K IE++ +  D  +WGALL
Sbjct: 411 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALL 470

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
             CRI+ +++LAE  A+ + E +P+N G+YVLL+N+YA A +W++V ++R+ + ++ L+K
Sbjct: 471 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRK 530

Query: 442 IPGWTWIEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
            PG +WIE++ +++ F  G +S+HP S++I  +L  +  K++  GY P T + L + DE 
Sbjct: 531 NPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 590

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLA+AFGL+  P    IR+ KNLRVCGDCH   K +S  TRR I++RD+
Sbjct: 591 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 650

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSCR +W
Sbjct: 651 NRFHHFKDGYCSCRGFW 667



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 141/310 (45%), Gaps = 35/310 (11%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + +RD +SW+ M+ G+            +++ +  G+ +D  T+  V+  C  
Sbjct: 66  ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H + +KS  +        L+DMY+KC  +D A ++F++M  R++V+WT M
Sbjct: 126 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 185

Query: 231 I----------GANKFL---------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           I          GA   L         LDV+  T+++   A+ GS+D+ +++ D ++  N+
Sbjct: 186 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 245

Query: 272 IS----WSAMIAAYGYHGQGKKALDLFPMMLSSRVL----------PNRITFVSLLYACS 317
            S     +A++  Y   G  + A  +F  M+   ++          P+  T   +L AC+
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACA 305

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
               +E G  +   +  +     D      +VDL  + G L  A +L+  M   KD   W
Sbjct: 306 SLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSW 363

Query: 378 GALLGACRIH 387
             ++    +H
Sbjct: 364 TVMIAGYGMH 373



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 97/190 (51%), Gaps = 8/190 (4%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCG 254
           LV  YA C  + + R++FD M  +++  W  M+        F   + L   +++   +  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
             +SA E+FD++  ++VISW++MI+ Y  +G  ++ L ++  M+   +  +  T +S+L 
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 315 ACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            C+ +G +  G  + S ++   F  R  +     ++D+  + G LD AL++ E M  E++
Sbjct: 122 GCAKSGTLSLGKAVHSLAIKSSFERR--INFSNTLLDMYSKCGDLDGALRVFEKMG-ERN 178

Query: 374 EGLWGALLGA 383
              W +++  
Sbjct: 179 VVSWTSMIAG 188


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 332/572 (58%), Gaps = 58/572 (10%)

Query: 63  FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           + S L SC   + +   +Q+HAQ    G   N  +A KL+++YA+  +L +A  LF+ + 
Sbjct: 50  YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +++   W+V++ G++      N    + + +  G++ D++TLPFV++AC     I  GR 
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 180 IHDIVLKSGLDIDQFVCAALVDM-------------------------------YAKCKV 208
           IH+ V+KSG + D FV AAL+DM                               YA+   
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229

Query: 209 IDDARQLFDQM------PTRDLVTWTVMIGAN-----------------KFLLDVILGTA 245
            D++  L  +M      PT   +   +   A+                  F  +  + TA
Sbjct: 230 PDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTA 289

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +IDMYAKCGS+  A  +F+R+R+K V+SW+A+I  Y  HG    ALDLF  M      P+
Sbjct: 290 LIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPD 348

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            ITFV +L ACS   L++EG  L++ M  D+ + P V+HYTCM+DLLG  G+LDEA  LI
Sbjct: 349 HITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLI 408

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            +MSV+ D G+WGALL +C+IH NV+LAE+A + L+E +P + G+YV+L+N+YA +G+W+
Sbjct: 409 RNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWE 468

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
            V K+R +M  +R+KK    +WIEV+NK++ F  GD +H  S+ IY  L  L   +  AG
Sbjct: 469 GVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAG 528

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y PDT    HDV+E+ K   + SHSE+LAIAFGLI+T  GT + I KNLR+C DCH  IK
Sbjct: 529 YAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIK 588

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S I  R I VRD NR+H F+ G CSC D+W
Sbjct: 589 FISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 141/337 (41%), Gaps = 66/337 (19%)

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           Y    ++++C D K +  G+ +H      G+  +Q +   LV +YA    + +AR LFD+
Sbjct: 48  YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDK 107

Query: 219 MPTRDLVTWTVMIGA------------------------NKFLLDVIL------------ 242
           +P ++L  W V+I                          + F L  +L            
Sbjct: 108 IPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEG 167

Query: 243 ------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                             G A+IDMYAKCG +  A  +FD++  ++ + W++M+AAY  +
Sbjct: 168 RSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQN 227

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVK 343
           G   +++ L   M ++ V P   T V+++ + +    +  G  +    W   F     VK
Sbjct: 228 GHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVK 287

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE- 402
             T ++D+  + G +  AL L E +  EK    W A++    +H       + A  L + 
Sbjct: 288 --TALIDMYAKCGSVKVALALFERLR-EKRVVSWNAIITGYAMHG----LAVGALDLFDK 340

Query: 403 -RQPQNPGHYVLLSNVYA-NAGRWQDVAK-IRDLMTR 436
            R+   P H   +  + A + GR  D  + + +LM R
Sbjct: 341 MRKEDRPDHITFVGVLAACSRGRLLDEGRALYNLMVR 377


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/525 (40%), Positives = 298/525 (56%), Gaps = 52/525 (9%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           +  RS+    F +    C +I++  QV +++       N++     L +Y     L+ A 
Sbjct: 396 ELDRSLQTAIF-NMYAKCGSIYEAEQVFSKMAN----KNVVAWTSFLSMYIKCGDLSSAE 450

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+ M  R+ VSW++M+ G+++  D +  FE        G Q D  T+  ++ AC    
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALA 510

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
            +  G+L+H   +K GL+ D                                        
Sbjct: 511 GLERGKLVHAEAVKLGLESD---------------------------------------- 530

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                   ++ T++I MY+KCG +  AR +FD+M  ++ ++W+AM+A YG HG G +A+D
Sbjct: 531 -------TVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVD 583

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  ML  RV PN IT  +++ ACS  GLV+EG  +F  M +DF + P  +HY CMVDLL
Sbjct: 584 LFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLL 643

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAGRL EA + I+SM  E D  +W ALLGAC+ H NV LAE AA  +LE +P     Y+
Sbjct: 644 GRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYI 703

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
            LSN+YA AGRW D  K+R +M  R LKK  G + IE++ +IH F   D  HP+ + I+ 
Sbjct: 704 TLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHA 763

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L TL+++++ AGY PD  F LHDVD+  K   L  HSEKLAIA+GL+ TP GT IRIMK
Sbjct: 764 ELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMK 823

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVCGDCH+  K +S I +R I+ RDANRFH+F  G CSC D+W
Sbjct: 824 NLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 178/381 (46%), Gaps = 63/381 (16%)

Query: 63  FISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S L +C N   + + R++H  + A G  T++ VA  L+ +Y+    ++ A  +F+ M 
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT 219

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+ VSW+ ++   ++       FE + + ++ G+  ++ T   ++ +C   + +  GR 
Sbjct: 220 ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRR 279

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           IH  + + GL+ D  V  AL+ MY KC  + +AR++FD+M  RD+++W+ MI        
Sbjct: 280 IHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAG------ 333

Query: 240 VILGTAVIDMYAKCG-----SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                     YA+ G     SID   ++ +RMR++                         
Sbjct: 334 ----------YAQSGYKDKESIDEVFQLLERMRREG------------------------ 359

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
                  V PN++TF+S+L AC+  G +E+G ++ + +        D    T + ++  +
Sbjct: 360 -------VFPNKVTFMSILRACTAHGALEQGRQIHAEL-SKVGFELDRSLQTAIFNMYAK 411

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            G + EA ++   M+  K+   W + L      K  DL+  A K   E   +N   + L+
Sbjct: 412 CGSIYEAEQVFSKMA-NKNVVAWTSFLSM--YIKCGDLSS-AEKVFSEMPTRNVVSWNLM 467

Query: 415 SNVYANAGRWQDVAKIRDLMT 435
              YA  G   D+ K+ +L++
Sbjct: 468 IAGYAQNG---DIVKVFELLS 485



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 49/241 (20%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+ ++S T   VI  C   +    G+++H  + + G++ID ++  +L++ Y+K + +  A
Sbjct: 51  GLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASA 110

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
            Q+F +M  RD+VTW+ MI                                         
Sbjct: 111 EQVFRRMTLRDVVTWSSMI----------------------------------------- 129

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
                 AAY  +    KA D F  M  + + PNRITF+S+L AC++  ++E+G R   ++
Sbjct: 130 ------AAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKG-RKIHTI 182

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
                +  DV   T ++ +  + G +  A ++   M+ E++   W A++ A   H+ ++ 
Sbjct: 183 VKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT-ERNVVSWTAIIQANAQHRKLNE 241

Query: 393 A 393
           A
Sbjct: 242 A 242


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/579 (37%), Positives = 338/579 (58%), Gaps = 62/579 (10%)

Query: 61  KFFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHA 113
           +F +S ++S C N+  +   +Q+H+Q +  G   +  V   L+ +YA   +  ++  A  
Sbjct: 271 RFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARK 330

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           +F+ + + +  SW+ M+ G+ +   +     + FR  I   +  + +T    ++AC +  
Sbjct: 331 IFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLA 390

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI- 231
            + +G  +    +K G      V  +L+ MYA+   IDDAR+ FD +  ++L+++  +I 
Sbjct: 391 ALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVID 450

Query: 232 -----------------------GANKFLLDVIL------GT------------------ 244
                                  GA+ F    +L      GT                  
Sbjct: 451 AYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKL 510

Query: 245 ------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                 A+I MY++CG+I+SA ++F+ M  +NVISW+++I  +  HG   +AL+LF  ML
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              V PN +T++++L ACSH GLV EG + F SM+ +  V P ++HY CMVD+LGR+G L
Sbjct: 571 EEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSL 630

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
            EA++ I SM  + D  +W   LGACR+H N++L + AAK ++E++P +P  Y+LLSN+Y
Sbjct: 631 SEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLY 690

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A+  +W +V+ IR  M  + L K  G +W+EVENK+H+F VGD++HP++ EIY  L  LS
Sbjct: 691 ASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLS 750

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
            K++  GY+P+ +F LHDV+EE K   L+ HSEK+A+AFGLI+T +   IR+ KNLR+CG
Sbjct: 751 VKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICG 810

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHS IK++S  T R IIVRDANRFHH + G CSC +YW
Sbjct: 811 DCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 156/350 (44%), Gaps = 70/350 (20%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KERDSVSWSVMVGGFSKVA 137
           VH ++       + +  N L+ +Y+       A ++F  M   RD +SWS MV  F+   
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNN 147

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVC 196
                  TF + I  G   + Y      RAC   + + +G  I   V+K+G L  D  V 
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVG 207

Query: 197 AALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIG----------------------- 232
             L+DM+ K +  +  A ++F++MP R+ VTWT+MI                        
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGY 267

Query: 233 --------------ANKFLL-----------------DVILGTAVIDMYAKC---GSIDS 258
                         AN  LL                 D  +G  +I+MYAKC   GS+ +
Sbjct: 268 EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCA 327

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYH-GQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           AR+IFD++   NV SW+AMI  Y    G  ++ALDLF  M+ + V+PN  TF S L AC+
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALK 363
           +   +  G ++F+      AV+       C    ++ +  R+GR+D+A K
Sbjct: 388 NLAALRIGEQVFTH-----AVKLGFSSVNCVANSLISMYARSGRIDDARK 432



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 148/319 (46%), Gaps = 59/319 (18%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  +F  M ER++V+W++M+    +        + F E I  G + D +TL  VI A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA 280

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDL 224
           C + + +++G+ +H   ++ GL +D+ V   L++MYAKC V   +  AR++FDQ+   ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 225 VTWTVMI-------GANKFLLDVILG---------------------------------- 243
            +WT MI       G ++  LD+  G                                  
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT 400

Query: 244 --------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                          ++I MYA+ G ID AR+ FD + +KN+IS++ +I AY  +   ++
Sbjct: 401 HAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEE 460

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL+LF  +    +  +  TF SLL   +  G + +G ++ + +     ++ +      ++
Sbjct: 461 ALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALI 519

Query: 350 DLLGRAGRLDEALKLIESM 368
            +  R G ++ A ++ E M
Sbjct: 520 SMYSRCGNIESAFQVFEDM 538



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 57/243 (23%)

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           T    +  G   D  T    ++ C   +   +G L+H+ + +S L +D     +L+ +Y+
Sbjct: 53  TLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYS 112

Query: 205 KCKVIDDARQLFDQM-PTRDLVTWTVMIGA------------------------NKFLL- 238
           KC   + A  +F  M  +RDL++W+ M+                          N++   
Sbjct: 113 KCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFA 172

Query: 239 ---------------DVILGTAV---------------IDMYAKC-GSIDSAREIFDRMR 267
                          D I G  V               IDM+ K  G + SA ++F++M 
Sbjct: 173 AATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP 232

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
           ++N ++W+ MI      G   +A+DLF  M+ S   P+R T   ++ AC++  L+  G +
Sbjct: 233 ERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQ 292

Query: 328 LFS 330
           L S
Sbjct: 293 LHS 295



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
           LD +   ++I +Y+KCG  + A  IF  M   +++ISWSAM++ +  +  G +AL  F  
Sbjct: 99  LDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVD 158

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA- 355
           M+ +   PN   F +   ACS    V  G  +F  +     ++ DV     ++D+  +  
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 356 GRLDEALKLIESMSVEKDEGLWGALL 381
           G L  A K+ E M  E++   W  ++
Sbjct: 219 GDLVSAFKVFEKMP-ERNAVTWTLMI 243


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/603 (37%), Positives = 346/603 (57%), Gaps = 62/603 (10%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFF-ISSLLSCRNIFQI----RQVHAQIVAGGT 88
           G+ QN M  R+ ++M  +     ++ P F  I S+L   +  ++    +++H   +  G 
Sbjct: 210 GYSQNGM-ARMALEM-VNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGF 267

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
            + + +A  L+ +YA   +L  A  LF+GM ER+ VSW+ M+  + +  +       F++
Sbjct: 268 DSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQK 327

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            +  G++    ++   + AC D  D+  GR IH + ++  LD +  V  +L+ MY KCK 
Sbjct: 328 MLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKE 387

Query: 209 IDDARQLFDQMPTR-----------------------------------DLVTWTVMIGA 233
           +D A  +F ++ +R                                   D  T+  +I A
Sbjct: 388 VDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITA 447

Query: 234 -------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                              N    +V + TA++DMYAKCG+I  AR IFD M +++V +W
Sbjct: 448 IAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  YG HG GK AL+LF  M    + PN +TF+S++ ACSH+GLVE GL+ F  M +
Sbjct: 508 NAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKE 567

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           ++++ P + HY  MVDLLGRAGRL+EA   I  M V+    ++GA+LGAC+IHKNV+ AE
Sbjct: 568 NYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A+ L E  P++ G++VLL+N+Y  A  W+ V ++R  M R+ L+K PG + +E++N++
Sbjct: 628 KVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEV 687

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H F  G + HP S++IY  L  L  +++ AGY+PDTN  L  ++++VK   L SHSEKLA
Sbjct: 688 HSFFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLA 746

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           I+FGL+ T  GT I + KNLRVC DCH+  K++S +T R IIVRD  RFHHF+ GACSC 
Sbjct: 747 ISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCG 806

Query: 575 DYW 577
           DYW
Sbjct: 807 DYW 809



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 168/349 (48%), Gaps = 55/349 (15%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C ++ ++R +   I   G     +   KL+ ++  + ++ +A  +F  + ++ +V +  M
Sbjct: 47  CSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTM 106

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + GF+KV+D     + F       ++   Y   ++++ C D  ++ +G+ IH +++KSG 
Sbjct: 107 LKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGF 166

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI-- 241
            +D F    L +MYAKC+ + +AR++FD+MP RDLV+W  ++      G  +  L+++  
Sbjct: 167 SLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNL 226

Query: 242 ----------------------------------------------LGTAVIDMYAKCGS 255
                                                         + TA++DMYAKCGS
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGS 286

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           + +AR +FD M ++NV+SW++MI AY  +   K+A+ +F  ML   V P  ++ +  L+A
Sbjct: 287 LKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHA 346

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           C+  G +E G R    +  +  +  +V     ++ +  +   +D A  +
Sbjct: 347 CADLGDLERG-RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASM 394


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/555 (39%), Positives = 315/555 (56%), Gaps = 57/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G   +L V+N L+ +YA    L DA   F  M   D VSW+ ++  + +  D
Sbjct: 338 IHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDD 397

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA- 197
            +     F +    G Q D  TL  +       +D    R +H  +++ G  ++  V   
Sbjct: 398 PVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGN 457

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLV-------------------------------- 225
           A+VDMYAK  ++D A ++F+ +  +D++                                
Sbjct: 458 AVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEII 517

Query: 226 ----TWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
               TW  ++ A                       LDV + T +ID+Y KCG +  A  +
Sbjct: 518 PNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSL 577

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F ++ Q++ ++W+A+I+ +G HG  +K L LF  ML   V P+ +TFVSLL ACSH+G V
Sbjct: 578 FYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFV 637

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG   F  M  ++ ++P +KHY CMVDLLGRAG L+ A   I+ M ++ D  +WGALLG
Sbjct: 638 EEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLG 696

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N++L + A+  L E   +N G+YVLLSN+YAN G+W+ V K+R L   R LKK 
Sbjct: 697 ACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKT 756

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ IEV  K+  F  G+ +HP+ +EIY  L  L+ K++  GYIPD +F L DV+E+ K
Sbjct: 757 PGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEK 816

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LAIAFG+I+TP  + IRI KNLRVCGDCH+  K +S IT+R I+VRD+NR
Sbjct: 817 EHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNR 876

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 877 FHHFKDGICSCGDYW 891



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 200/432 (46%), Gaps = 68/432 (15%)

Query: 58  VDPKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           + P F  F   L +C  +   R++H      G   N+ VA  L+++Y+       A +LF
Sbjct: 214 IRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD  SW+ M+ G  +  +     +   E    G++++  T+  ++  C    DI 
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
              LIH  V+K GL+ D FV  AL++MYAK   ++DAR+ F QM   D+V+W  +I A  
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393

Query: 234 -----------------NKFLLD------------------------------------V 240
                            N F  D                                    V
Sbjct: 394 QNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           ++G AV+DMYAK G +DSA ++F+ +  K+VISW+ +I  Y  +G   +A++++ MM   
Sbjct: 454 VIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEEC 513

Query: 301 R-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           + ++PN+ T+VS+L A +H G +++G+R+   +     +  DV   TC++D+ G+ GRL 
Sbjct: 514 KEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT-NLHLDVFVATCLIDVYGKCGRLV 572

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS---- 415
           +A+ L   +  E     W A++    IH + +        +L+ +   P H   +S    
Sbjct: 573 DAMSLFYQVPQESSV-TWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHVTFVSLLSA 630

Query: 416 ---NVYANAGRW 424
              + +   G+W
Sbjct: 631 CSHSGFVEEGKW 642



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 179/420 (42%), Gaps = 65/420 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA +V  G + ++ ++ +L+ +YA    ++ +   F+ + ++D  +W+ M+  +     
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 139 F---INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           F   I CF  ++  +   ++ D YT P V++AC     +V GR IH    K G   + FV
Sbjct: 198 FHEAIGCF--YQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFV 252

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI-------- 241
            A+L+ MY++      AR LFD MP RD+ +W  MI      G     LDV+        
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 242 ----------------------------------------LGTAVIDMYAKCGSIDSARE 261
                                                   +  A+I+MYAK G+++ AR+
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F +M   +V+SW+++IAAY  +     A   F  M  +   P+ +T VSL    + +  
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +    +   +     +  DV     +VD+  + G LD A K+ E + V KD   W  L+
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILV-KDVISWNTLI 491

Query: 382 GACRIHKNVDLAEMAAKSLLERQP--QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
                +     A    K + E +    N G +V +   YA+ G  Q   +I   + +  L
Sbjct: 492 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNL 551



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 54/260 (20%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
             + +H +++ +G     F+   LV++YA    +  +R  FDQ+P +D+ TW  MI A  
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 234 ---------NKFLLDVILGTAVIDMYA------KCGSIDSAREI---------------- 262
                      F   +++     D Y        CG++   R I                
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVA 253

Query: 263 -------------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                              FD M  +++ SW+AMI+    +G   +ALD+   M    + 
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            N +T VS+L  C   G +   + L         +  D+     ++++  + G L++A K
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAM-LIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 364 LIESMSVEKDEGLWGALLGA 383
             + M +  D   W +++ A
Sbjct: 373 AFQQMFI-TDVVSWNSIIAA 391



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/204 (19%), Positives = 82/204 (40%), Gaps = 1/204 (0%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  ++H +++      ++ VA  L+ +Y     L DA +LF  + +  SV+W+ ++    
Sbjct: 538 QGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 597

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                    + F E +  G++ D  T   ++ AC     +  G+    ++ + G+     
Sbjct: 598 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLK 657

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
               +VD+  +   ++ A      MP + D   W  ++GA +   ++ LG    D   + 
Sbjct: 658 HYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEV 717

Query: 254 GSIDSAREIFDRMRQKNVISWSAM 277
            S +    +       NV  W  +
Sbjct: 718 DSKNVGYYVLLSNIYANVGKWEGV 741


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 325/570 (57%), Gaps = 54/570 (9%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F  SSL+       +  V +Q+       N+++ N ++        + D+  LF+GMKER
Sbjct: 174 FVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKER 233

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           DS+SW+ M+ G  +        + FR+  + GM +D YT   V+ AC   + +  G+ IH
Sbjct: 234 DSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIH 293

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFLL 238
            ++++SG + + FV +ALVDMY KC+ +  A  +F +M  +++V+WT M+   G N F  
Sbjct: 294 TLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSE 353

Query: 239 -----------------DVILGT----------------------------------AVI 247
                            D  LG+                                  A+I
Sbjct: 354 EAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALI 413

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            +Y KCGSI+ + ++FD M  ++ +SW+A+++ Y   G+  + +DLF  ML   + P+ +
Sbjct: 414 TLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAV 473

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+++L ACS  GLVE G + F SM  D  + P   HYTCM+DL GRAGRL+EA   I  
Sbjct: 474 TFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINK 533

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M    D   W  LL +CR++ N ++ + AA+SLLE  PQNP  Y+LLS++YA  G+W +V
Sbjct: 534 MPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNV 593

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           A++R  M  +  +K PG++WI+ ++K++ FS  D + P S++IY  L  L+ K+   GY+
Sbjct: 594 AQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYV 653

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PD +  LHDV++  K+  L  HSEKLAIAFGL+  P G  IR++KNLRVCGDCH+  K++
Sbjct: 654 PDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYI 713

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S I++R I+VRDA RFH F+ G CSC D+W
Sbjct: 714 SKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 192/434 (44%), Gaps = 77/434 (17%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-M 154
           N +L  Y+    L+    +F+ M  RD VSW+ ++ G+      +   +T+   ++ G +
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
            L+  T   ++     +  + +GR IH  ++K G     FV ++LVDMYAK  ++  A Q
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 215 LFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
           +FD++  R++V +  MI            T ++    + G +  ++ +F  M++++ ISW
Sbjct: 195 VFDEVQERNVVMYNTMI------------TGLL----RSGMVKDSKRLFHGMKERDSISW 238

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-----------HTGLVE 323
           + MI     +G   +A+DLF  M    +  ++ TF S+L AC            HT ++ 
Sbjct: 239 TTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIR 298

Query: 324 EGLR----LFSSMWDDF----AVR-----------PDVKHYTCMVDLLGRAGRLDEALKL 364
            G      + S++ D +    +VR            +V  +T M+   G+ G  +EA+++
Sbjct: 299 SGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRV 358

Query: 365 IESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSN--- 416
              M    +E D+   G+++ +C      +LA +   +    Q    G   ++ +SN   
Sbjct: 359 FCDMQRNGIEPDDFTLGSVISSC-----ANLASLEEGAQFHCQALVSGLISFITVSNALI 413

Query: 417 -VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
            +Y   G  +D  ++ D M+ R        +W  + +   QF   + T           +
Sbjct: 414 TLYGKCGSIEDSNQLFDEMSFR-----DEVSWTALVSGYAQFGKANET-----------I 457

Query: 476 TLSEKLELAGYIPD 489
            L E++ + G  PD
Sbjct: 458 DLFERMLVQGLKPD 471



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 101/204 (49%), Gaps = 18/204 (8%)

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           + C + ++    + +H +++KS  + + F+   L++ Y+K   I  AR +FD+MP  +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           +W  M+ A                Y+K G + + +EIF  M  ++ +SW+++I+ Y  +G
Sbjct: 73  SWNTMLSA----------------YSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYG 116

Query: 286 QGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
              +A+  +  M+   VL  NRITF ++L   S  G V+ G ++   +   F     V  
Sbjct: 117 SVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIV-KFGFGAYVFV 175

Query: 345 YTCMVDLLGRAGRLDEALKLIESM 368
            + +VD+  + G +  A ++ + +
Sbjct: 176 GSSLVDMYAKMGLVSVASQVFDEV 199


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 323/577 (55%), Gaps = 58/577 (10%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD +F+ + L  C   + + Q R VH  ++      +L++ N LL +YA   +L +A  +
Sbjct: 49  VDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKV 108

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M ERD V+W+ ++ G+S+     +    F + +R G   + +TL  VI+A    +  
Sbjct: 109 FDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRG 168

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H   +K G D +  V +AL+D+Y +  ++DDA+ +FD + +R+ V+W  +I   
Sbjct: 169 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGH 228

Query: 232 ----GANKFL-----------------------------------------------LDV 240
               G  K L                                               L  
Sbjct: 229 ARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 288

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
             G  ++DMYAK GSI  AR+IFDR+ +++V+SW++++ AY  HG G +A+  F  M   
Sbjct: 289 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRG 348

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + PN I+F+S+L ACSH+GL++EG   +  M  D  +  +  HY  +VDLLGRAG L+ 
Sbjct: 349 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNR 407

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           AL+ IE M +E    +W ALL ACR+HKN +L   AA+ + E  P +PG +V+L N+YA+
Sbjct: 408 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 467

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
            GRW D A++R  M    +KK P  +W+E+EN IH F   D  HPQ EEI R    +  K
Sbjct: 468 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 527

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT+  +  VD++ +  NL  HSEK+A+AF L+ TP G+ I I KN+RVCGDC
Sbjct: 528 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 587

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           HS IK  S    R IIVRD NRFHHF+ GACSC+DYW
Sbjct: 588 HSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 322/576 (55%), Gaps = 56/576 (9%)

Query: 58   VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            VD    ++S+ +C N+  +   R +H Q V       ++  N LL +Y+    L DA   
Sbjct: 652  VDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA 711

Query: 115  FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            F  M ++  VSW+ ++  + +   + +    F E    G+  D Y++  V+ AC     +
Sbjct: 712  FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771

Query: 175  VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
              GR +H+ + K+ + +   V  AL+DMYAKC  +++A  +F Q+P +D+V+W  MIG  
Sbjct: 772  DKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGY 831

Query: 234  ----------------------------------------------------NKFLLDVI 241
                                                                N +  ++ 
Sbjct: 832  SKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891

Query: 242  LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            +  A+IDMY KCGS+  AR +FD + +K++I+W+ MI+  G HG G +A+  F  M  + 
Sbjct: 892  VANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAG 951

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            + P+ ITF S+LYACSH+GL+ EG   F+SM  +  + P ++HY CMVDLL R G L +A
Sbjct: 952  IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKA 1011

Query: 362  LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
              LIE+M ++ D  +WGALL  CRIH +V+LAE  A+ + E +P N G+YVLL+N+YA A
Sbjct: 1012 YNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEA 1071

Query: 422  GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
             +W++V K+R+ + +R LKK PG +WIEV+ K   F   D+ HPQ++ I+ +L  L  K+
Sbjct: 1072 EKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKM 1131

Query: 482  ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
            +  G+ P   + L +  +  K   L  HSEKLA+AFG++  P G  IR+ KNLRVC DCH
Sbjct: 1132 KNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCH 1191

Query: 542  SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
               K +S  TRR II+RD+NRFHHF+ G CSCRD+W
Sbjct: 1192 EMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 176/387 (45%), Gaps = 62/387 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS-WSVMVGGFSK 135
           + VH+ I + G     ++  KL+++Y    AL +   +F+ +   + V  W++M+  ++K
Sbjct: 471 KMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAK 530

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           + D+      F++  + G+  +SYT   +++       +   + IH  V K G      V
Sbjct: 531 IGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTV 590

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------GANKFLLDVI---- 241
             +L+  Y K   +D A +LFD++  RD+V+W  MI           A +F + ++    
Sbjct: 591 VNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRV 650

Query: 242 ---------------------LGTA-------------------VIDMYAKCGSIDSARE 261
                                LG A                   ++DMY+KCG+++ A +
Sbjct: 651 GVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQ 710

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F++M QK V+SW+++IAAY   G    A+ LF  M S  V P+  +  S+L+AC+    
Sbjct: 711 AFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNS 770

Query: 322 VEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           +++G  + + +  ++ A+   V +   ++D+  + G ++EA  +   + V KD   W  +
Sbjct: 771 LDKGRDVHNYIRKNNMALCLPVSN--ALMDMYAKCGSMEEAYLVFSQIPV-KDIVSWNTM 827

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQN 407
           +G    +    L   A K   E Q ++
Sbjct: 828 IGG---YSKNSLPNEALKLFAEMQKES 851



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 156/384 (40%), Gaps = 61/384 (15%)

Query: 62  FFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           +  S +L C      + + +++H  +   G  +   V N L+  Y     +  AH LF+ 
Sbjct: 554 YTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDE 613

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           + +RD VSW+ M+ G        +  E F + +   + +D  TL   + AC +   + +G
Sbjct: 614 LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
           R +H   +K+    +      L+DMY+KC  ++DA Q F++M  + +V+WT +I A    
Sbjct: 674 RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 234 ---------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN-------- 270
                               DV   T+V+   A   S+D  R++ + +R+ N        
Sbjct: 734 GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS 793

Query: 271 ---------------------------VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                                      ++SW+ MI  Y  +    +AL LF  M      
Sbjct: 794 NALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESR 852

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ IT   LL AC     +E G  +   +  +     ++     ++D+  + G L  A +
Sbjct: 853 PDGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGSLVHA-R 910

Query: 364 LIESMSVEKDEGLWGALLGACRIH 387
           L+  M  EKD   W  ++  C +H
Sbjct: 911 LLFDMIPEKDLITWTVMISGCGMH 934



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 131/306 (42%), Gaps = 59/306 (19%)

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           F +V D  N  E  R   +  + L++Y+   +++ C + K +  G+++H ++  +G+ I+
Sbjct: 428 FCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISSNGIPIE 485

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTVM--------------------- 230
             + A LV MY  C  + + R++FD + + + V  W +M                     
Sbjct: 486 GVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQ 545

Query: 231 ---IGANKFLLDVILG------------------------------TAVIDMYAKCGSID 257
              I  N +    IL                                ++I  Y K G +D
Sbjct: 546 KLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVD 605

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           SA ++FD +  ++V+SW++MI+    +G    AL+ F  ML  RV  +  T V+ + AC+
Sbjct: 606 SAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACA 665

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           + G +  G R             +V     ++D+  + G L++A++  E M  +K    W
Sbjct: 666 NVGSLSLG-RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG-QKTVVSW 723

Query: 378 GALLGA 383
            +L+ A
Sbjct: 724 TSLIAA 729



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 25/204 (12%)

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
           KS LD++ +  ++++ + A+ K + + + +              +I +N   ++ +LG  
Sbjct: 446 KSELDLNAY--SSILQLCAEHKCLQEGKMVHS------------VISSNGIPIEGVLGAK 491

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           ++ MY  CG++   R IFD +   N V  W+ M++ Y   G  ++++ LF  M    +  
Sbjct: 492 LVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITG 551

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL----GRAGRLDE 360
           N  TF  +L   +  G V E  R+   ++     +     Y  +V+ L     ++G +D 
Sbjct: 552 NSYTFSCILKCFATLGRVGECKRIHGCVY-----KLGFGSYNTVVNSLIATYFKSGEVDS 606

Query: 361 ALKLIESMSVEKDEGLWGALLGAC 384
           A KL + +  ++D   W +++  C
Sbjct: 607 AHKLFDELG-DRDVVSWNSMISGC 629


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/480 (43%), Positives = 284/480 (59%), Gaps = 47/480 (9%)

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157
           L  +Y+    +  A  LF+   E+   SW+ M+ G+++          F+E  +C ++ +
Sbjct: 349 LTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPN 408

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
             T+  ++ AC     + +G+ +HD++                            R+ F+
Sbjct: 409 PVTVTSILSACAQLGALSLGKWVHDLI---------------------------NRESFE 441

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                ++ + TA+IDMYAKCGSI  A+ +F  M +KN ++W+AM
Sbjct: 442 S--------------------NIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAM 481

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I+ YG HG G +AL+LF  ML SRV P  +TF+S+LYACSH GLV EG  +F SM  D  
Sbjct: 482 ISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHG 541

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
             P  +HY CMVDLLGRAG LD+AL  I  M VE    +WGALLGAC IHK+ +LA +A+
Sbjct: 542 FEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLAS 601

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
             L E  PQN G+YVLLSN+Y+    + + A +R ++ RR+L K PG T IEV N +H F
Sbjct: 602 DKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIF 661

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
           + GD +HPQ+  IY ML  L+ K+  AG+  +T   LHDV+EE K   +  HSEKLAIAF
Sbjct: 662 TSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAF 721

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GLI +  GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRFHHF+ G CSC DYW
Sbjct: 722 GLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 56/358 (15%)

Query: 84  VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143
           +  G  ++L V + ++  Y     +  A  +F+GM ERD+V W+ MV G  K + F    
Sbjct: 133 IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
             F + ++ G+  DS T+  V+    + +D+ +G  I  + +K G     +V   L  +Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWT---------------------VMIGANKFLLDVIL 242
           +KC  I+ AR LF Q+   DLV++                      +++   K     I+
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 243 G---------------------------------TAVIDMYAKCGSIDSAREIFDRMRQK 269
           G                                 TA+  +Y++   I+SAR +FD   +K
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++ SW+AMI+ Y  +G  +KA+ LF  M    V PN +T  S+L AC+  G +  G +  
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-KWV 431

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             + +  +   ++   T ++D+  + G + EA +L  SM  EK+   W A++    +H
Sbjct: 432 HDLINRESFESNIFVSTALIDMYAKCGSITEAQRLF-SMMPEKNAVTWNAMISGYGLH 488



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 131/310 (42%), Gaps = 62/310 (20%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
             F++ +     + Q+ Q HAQI+  G   +L+   KL +  +  KA+  A  LF+ +  
Sbjct: 11  NLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPN 70

Query: 121 RDSVSWSVMVGGFS---KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
            D   ++V++  FS     +  ++ +   R+     ++ D++T  FVI         ++ 
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRK--STPLEPDNFTYAFVISGASSLGLGLLL 128

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
                +   +G   D FV +A+V  Y K   +  AR++FD M  RD V W  M+      
Sbjct: 129 HAHSIV---AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 232 ---------------GANKF--------------LLDVILG------------------- 243
                          G   F              L D+ LG                   
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           T +  +Y+KCG I++AR +F ++ Q +++S++AMI+ Y  + + + ++ LF  +L S   
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 304 PNRITFVSLL 313
            N  + V L+
Sbjct: 306 VNSSSIVGLI 315


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/583 (40%), Positives = 321/583 (55%), Gaps = 60/583 (10%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           PD     SV P     +     N    R VHA     G   +  V   L+ +YA    + 
Sbjct: 219 PDSTTLASVLP-----AAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDME 273

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  LF+ M+  D V+++ ++ G+S      +  E F+E +  G++  S TL  +I    
Sbjct: 274 CARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHS 333

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------- 222
                 +   +H  V+K+GLD +  V  AL  +Y +   +D AR+ FD MP +       
Sbjct: 334 PFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNA 393

Query: 223 ----------------------------------------------DLVTWTVMIGAN-K 235
                                                          L  W   I AN K
Sbjct: 394 MISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEK 453

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
             L+V + TA+IDMY KCGSI  AR IFD M  KNV+SW+ MI+ YG HGQG +AL L+ 
Sbjct: 454 LELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYK 513

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M+ + + P   TF+S+LYACSH GLV+EG  +F SM  D+ + P ++H TCMVDLLGRA
Sbjct: 514 DMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRA 573

Query: 356 GRLDEALKLIESMSVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           G+L EA +LI          G+WGALLGAC +HK+ DLA++A++ L E +P+N G+YVLL
Sbjct: 574 GQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLL 633

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+Y +  ++ + A +R     R+L K PG T IE+ ++ H F  GD  HPQS+ IY  L
Sbjct: 634 SNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYL 693

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             L+ K+  AGY PDT   L+DV+EE K   +  HSEKLAIAFGL+ T  GT IRI+KNL
Sbjct: 694 EKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEIRIIKNL 753

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RVC DCH+  K +S +T+R+I+VRDA+RFHHF  G CSC DYW
Sbjct: 754 RVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 171/402 (42%), Gaps = 68/402 (16%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +R +HA  VA G   +  VA+ L  +Y       DA  +F+ +   D+V W+ ++ G S 
Sbjct: 142 LRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSG 201

Query: 136 VADFINCFETFREFIRCG----MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
                   E    F+R      ++ DS TL  V+ A  +  +  MGR +H    K GL  
Sbjct: 202 S-------EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQ 254

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV---------MIGANKFLLDVIL 242
            + V   L+ +YAKC  ++ AR LFD+M   DLVT+           M+G++  L   ++
Sbjct: 255 HEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELV 314

Query: 243 G---------------------------------------------TAVIDMYAKCGSID 257
           G                                             TA+  +Y +   +D
Sbjct: 315 GMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMD 374

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           SAR  FD M +K + SW+AMI+ Y  +G  + A+ LF  M +  V PN +T  S L AC+
Sbjct: 375 SARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACA 434

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G +  G +    +  +  +  +V   T ++D+  + G + EA  + +SM   K+   W
Sbjct: 435 QLGALSLG-KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMD-NKNVVSW 492

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             ++    +H     A    K +++    +P     LS +YA
Sbjct: 493 NVMISGYGLHGQGAEALKLYKDMMDAH-LHPTSSTFLSVLYA 533


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/504 (42%), Positives = 308/504 (61%), Gaps = 52/504 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            +HA +V  G   +  V N +L  YA    + L  A  +F+ M E+D VSW+ M+  +++
Sbjct: 214 SLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQ 272

Query: 136 VADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                +    +R+ +     ++ ++ TL  ++ AC     I  G+ IH+ V++ GL+ + 
Sbjct: 273 NGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENV 332

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           +V                                               GT+V+DMY+KC
Sbjct: 333 YV-----------------------------------------------GTSVVDMYSKC 345

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ AR+ F ++++KN++SWSAMI  YG HG G++ALD+F  M  S   PN ITF+S+L
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVL 405

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACSH GL+++G   +++M   F + P V+HY CMVDLLGRAG LDEA  LI+ M V+ D
Sbjct: 406 AACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 465

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WGALL ACRIHKNV+LAE++AK L E    N G+YVLLSN+YA AG W+DV ++R L
Sbjct: 466 AAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVL 525

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           +  R ++K PG++ +E++ + H F VGD +HPQ +EIY  L  L EK++ AGY+P+T   
Sbjct: 526 VKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSV 585

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD+DEE K   L+ HSEKLAIAF L+ +  G+ I ++KNLRVC DCH+ IK ++ I +R
Sbjct: 586 LHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQR 645

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            IIVRD  RFHHF+ G+CSC DYW
Sbjct: 646 EIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 42.7 bits (99), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 177 GRLIHDIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
           GR +H + ++SGL   D F  +AL+ MY  C    DAR+ FD++P+ + V  T M
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAM 162


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 332/582 (57%), Gaps = 69/582 (11%)

Query: 62  FFISSLLS--CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F +S++++  C ++  I Q+H+  V+ G  + + V N LL  Y  +  L DA  +F GM 
Sbjct: 141 FTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG 200

Query: 120 E-RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             RD VSW+ M+  + +  +       F+E +R G+ +D +TL  V+ A    +D+  G 
Sbjct: 201 GIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGL 260

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIGA---- 233
             H  ++K+G   +  V + L+D+Y+KC   + D R++F+++   DLV W  M+      
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQN 320

Query: 234 NKFLLDVI---------------------------------------------------- 241
            +FL D +                                                    
Sbjct: 321 EEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRIS 380

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  A+I MY+KCG++  AR +FDRM + N +S ++MIA Y  HG   ++L LF  ML  +
Sbjct: 381 VDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQ 440

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P  ITF+S+L AC+HTG VEEG   F+ M + F + P+ +HY+CM+DLLGRAG+L EA
Sbjct: 441 IAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEA 500

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             LI  M        W +LLGACR H N++LA  AA  +L+ +P N   YV+LSN+YA+A
Sbjct: 501 ENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASA 560

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GRW++VA +R  M  R +KK PG +WIEV+ +IH F   DS+HP  +EIY  L  +S K+
Sbjct: 561 GRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKM 620

Query: 482 ELAGYIPDTNFELHDVD------EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
           + AGY+PD  + L   D      +E+++G+   HSEKLA+AFGLI+T +G  + ++KNLR
Sbjct: 621 KRAGYVPDVRWALVKDDGTRGGEKEIRLGH---HSEKLAVAFGLISTKDGEPVLVVKNLR 677

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +CGDCH+ IK +SAI  R I VRDA+RFH F+ G CSC DYW
Sbjct: 678 ICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 145/341 (42%), Gaps = 69/341 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  YA       AH LF+ + E D VS++ ++  ++   +       F    
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D +TL  VI AC D  D+ +   +H + + SG D    V  AL+  Y K   +D
Sbjct: 133 EMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 211 DARQLFDQM-PTRDLVTWTVMIGA------------------------NKFLLDVIL--- 242
           DA+++F  M   RD V+W  MI A                        + F L  +L   
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 243 ---------------------------GTAVIDMYAKC-GSIDSAREIFDRMRQKNVISW 274
                                      G+ +ID+Y+KC G +   R++F+ + + +++ W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 275 SAMIAAYGYHGQG-KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           + M++ Y  + +  + AL+ F  M      PN  +FV ++ ACS+     +G ++ S   
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS--- 367

Query: 334 DDFAVRPDVKHYTCMVD-----LLGRAGRLDEALKLIESMS 369
              A++ D+      VD     +  + G L +A +L + M+
Sbjct: 368 --LALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA 406



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 106/227 (46%), Gaps = 23/227 (10%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C   +D+  G+ +H + +KS +    +     + +Y+KC  +  AR+ F  +   +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           + ++  +I A                YAK      A ++FD++ + +++S++ +I+AY  
Sbjct: 74  VFSFNAIIAA----------------YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYAD 117

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYA-CSHTGLVEEGLRL-FSSMWDDFAVRPD 341
            G+   AL LF  M    +  +  T  +++ A C   GL+ +   +  SS +D +     
Sbjct: 118 CGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSY----- 172

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           V     ++   G+ G LD+A ++   M   +DE  W +++ A   H+
Sbjct: 173 VSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 332/576 (57%), Gaps = 67/576 (11%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F + L +C ++       QVH  IV  G  +N+ V + L+ +YA    L +A  +   M+
Sbjct: 268 FPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETME 327

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           + D VSW+ ++ GF +          F+      M++D YT P V+  C      V+G +
Sbjct: 328 DDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC------VVGSI 381

Query: 180 ----IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---- 231
               +H +++K+G +  + V  ALVDMYAK   +D A  +F++M  +D+++WT ++    
Sbjct: 382 NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYA 441

Query: 232 ------------------GAN--KFLLDVILG---------------------------- 243
                             G N  +F++  IL                             
Sbjct: 442 QNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQS 501

Query: 244 --TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
              +++ MYAKCG +D A  IF  M+ K+VI+W+A+I  Y  +G+G+ +L  +  M+SS 
Sbjct: 502 VYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSG 561

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
             P+ ITF+ LL+ACSH GLV+EG + F  M   + ++P  +HY CM+DL GR+G+LDEA
Sbjct: 562 TRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEA 621

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            +L++ M V+ D  +W +LL ACR+H+N++LAE AA +L E +P N   YV+LSN+Y+ +
Sbjct: 622 KQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSAS 681

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            +W DVAKIR LM  + + K PG +W+E+ ++++ F   D  HP+  EIY  +  +  ++
Sbjct: 682 RKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRI 741

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           + AGY+PD +F LHD+D+E K   L  HSEKLA+AFGL+A P    IRI KNLRVCGDCH
Sbjct: 742 KEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCH 801

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S +K++S +  R II+RD+N FHHF  G CSC DYW
Sbjct: 802 SAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 170/413 (41%), Gaps = 102/413 (24%)

Query: 63  FISSLLS-----CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F S +LS     C+ +  +R +H    A  +  ++   N+LL   +    + DA  LF+ 
Sbjct: 33  FSSKVLSFPHNPCKFMAFLRSIHTTTAA--SYESIYQTNQLLNQLSKSGQVNDARKLFDK 90

Query: 118 MKERDSVSWSVMVG-------------------------------GFSKVADFINCFETF 146
           M ++D  SW+ M+                                G+ K    +  F+ F
Sbjct: 91  MPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF 150

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           R     G +   +TL  V+R C     I  G +IH  V+K+G + + FV   LVDMYAKC
Sbjct: 151 RSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKC 210

Query: 207 KVIDDARQLFD--QMPTRDLVTWTVMIGA------------------------NKFLLDV 240
           K + +A  LF   +   ++ V WT M+                          N++    
Sbjct: 211 KCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPT 270

Query: 241 ILG------------------------------TAVIDMYAKCGSIDSAREIFDRMRQKN 270
           IL                               +A++DMYAKCG + +A+ + + M   +
Sbjct: 271 ILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDD 330

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR--L 328
           V+SW++++  +  HG  ++AL LF  M    +  +  TF S+L  C    +  + +   +
Sbjct: 331 VVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLI 390

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             + ++++ +  +      +VD+  + G +D A  + E M +EKD   W +L+
Sbjct: 391 IKTGFENYKLVSNA-----LVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLV 437


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 332/582 (57%), Gaps = 69/582 (11%)

Query: 62  FFISSLLS--CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F +S++++  C ++  I Q+H+  V+ G  + + V N LL  Y  +  L DA  +F GM 
Sbjct: 141 FTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMG 200

Query: 120 E-RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             RD VSW+ M+  + +  +       F+E +R G+ +D +TL  V+ A    +D+  G 
Sbjct: 201 GIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGL 260

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIGA---- 233
             H  ++K+G   +  V + L+D+Y+KC   + D R++F+++   DLV W  M+      
Sbjct: 261 QFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQN 320

Query: 234 NKFLLDVI---------------------------------------------------- 241
            +FL D +                                                    
Sbjct: 321 EEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRIS 380

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  A+I MY+KCG++  AR +FDRM + N +S ++MIA Y  HG   ++L LF  ML  +
Sbjct: 381 VDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQ 440

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P  ITF+S+L AC+HTG VEEG   F+ M + F + P+ +HY+CM+DLLGRAG+L EA
Sbjct: 441 IAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEA 500

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             LI  M        W +LLGACR H N++LA  AA  +L+ +P N   YV+LSN+YA+A
Sbjct: 501 ENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASA 560

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GRW++VA +R  M  R +KK PG +WIEV+ +IH F   DS+HP  +EIY  L  +S K+
Sbjct: 561 GRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKM 620

Query: 482 ELAGYIPDTNFELHDVD------EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
           + AGY+PD  + L   D      +E+++G+   HSEKLA+AFGLI+T +G  + ++KNLR
Sbjct: 621 KRAGYVPDVRWALVKDDGTRGGEKEIRLGH---HSEKLAVAFGLISTKDGEPVLVVKNLR 677

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +CGDCH+ IK +SAI  R I VRDA+RFH F+ G CSC DYW
Sbjct: 678 ICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 145/341 (42%), Gaps = 69/341 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  YA       AH LF+ + E D VS++ ++  ++   +       F    
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMR 132

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D +TL  VI AC D  D+ +   +H + + SG D    V  AL+  Y K   +D
Sbjct: 133 EMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 211 DARQLFDQM-PTRDLVTWTVMIGA------------------------NKFLLDVIL--- 242
           DA+++F  M   RD V+W  MI A                        + F L  +L   
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 243 ---------------------------GTAVIDMYAKC-GSIDSAREIFDRMRQKNVISW 274
                                      G+ +ID+Y+KC G +   R++F+ + + +++ W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 275 SAMIAAYGYHGQG-KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           + M++ Y  + +  + AL+ F  M      PN  +FV ++ ACS+     +G ++ S   
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHS--- 367

Query: 334 DDFAVRPDVKHYTCMVD-----LLGRAGRLDEALKLIESMS 369
              A++ D+      VD     +  + G L +A +L + M+
Sbjct: 368 --LALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMA 406



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 106/227 (46%), Gaps = 23/227 (10%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C   +D+  G+ +H + +KS +    +     + +Y+KC  +  AR+ F  +   +
Sbjct: 14  LLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPN 73

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           + ++  +I A                YAK      A ++FD++ + +++S++ +I+AY  
Sbjct: 74  VFSFNAIIAA----------------YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYAD 117

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYA-CSHTGLVEEGLRL-FSSMWDDFAVRPD 341
            G+   AL LF  M    +  +  T  +++ A C   GL+ +   +  SS +D +     
Sbjct: 118 CGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSY----- 172

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           V     ++   G+ G LD+A ++   M   +DE  W +++ A   H+
Sbjct: 173 VSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQ 219


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 325/555 (58%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH   + G    +L V   LL +YA    + DA  LF  M + D + WS+M+  +++ 
Sbjct: 257 KSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQS 316

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  + F    +  +  +++T   V++AC     + +G+ IH  VLK GL+ + FV 
Sbjct: 317 DRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVS 376

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRD--------------------------------- 223
            A++D+YAKC  I+++ +LF+++P R+                                 
Sbjct: 377 NAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQ 436

Query: 224 --LVTWTVMIGANKFLL-------------------DVILGTAVIDMYAKCGSIDSAREI 262
              VT++ ++ A+  L                    D ++  ++IDMYAKCG I+ AR  
Sbjct: 437 PTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLT 496

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD+M +++ +SW+AMI  Y  HG   +AL+LF MM  +   PN++TFV +L ACS+ GL+
Sbjct: 497 FDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLL 556

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            +G   F SM  D+ ++P ++HYTCMV LLGR GR DEA+KLI  ++ +    +W ALLG
Sbjct: 557 YKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLG 616

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC IHK VDL  + A+ +LE +P +   +VLLSN+YA AGRW +VA +R  M +++++K 
Sbjct: 617 ACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKE 676

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +W+E +  +H FSVGD++HP  + I  ML  L++K   AGY+PD N  L DV ++ K
Sbjct: 677 PGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEK 736

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
             +L+ HSE+LA+A+GLI TP    IRI+KNLR+C DCH+ +K +S + +R I++RD NR
Sbjct: 737 ERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINR 796

Query: 563 FHHFEGGACSCRDYW 577
           FHHF  G CSC DYW
Sbjct: 797 FHHFRHGVCSCGDYW 811



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 174/367 (47%), Gaps = 64/367 (17%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA +   G   +  V   L+  Y++   +  A  +F+ +  +D VSW+ MV  +++   
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           +    + F +    G + +++T+   +++C   +   +G+ +H   LK   D D FV  A
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------AN 234
           L+++YAK   I DA++LF++MP  DL+ W++MI                          N
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337

Query: 235 KFLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFD 264
            F                                +V +  A++D+YAKCG I+++ ++F+
Sbjct: 338 NFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFE 397

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            +  +N ++W+ +I  Y   G G++A++LF  ML   + P  +T+ S+L A +    +E 
Sbjct: 398 ELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEP 457

Query: 325 GLRLFS----SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           GL++ S    +M++   V  +      ++D+  + GR+++A    + M+ ++DE  W A+
Sbjct: 458 GLQIHSLTIKTMYNKDTVVAN-----SLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAM 511

Query: 381 LGACRIH 387
           +    +H
Sbjct: 512 ICGYSMH 518



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 162/359 (45%), Gaps = 56/359 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H  I+  GT  +L   N LL  Y    +L DA  LF+ M + +++S+  +  G+S+ 
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRD 114

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F           + G +++ +    +++         +   +H  V K G   D FV 
Sbjct: 115 HQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVG 174

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+D Y+    +D AR +FD +  +D+V+WT M+                         
Sbjct: 175 TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYK 234

Query: 234 -NKFLL------------------------------DVILGTAVIDMYAKCGSIDSAREI 262
            N F +                              D+ +G A++++YAK G I  A+ +
Sbjct: 235 PNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRL 294

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M + ++I WS MIA Y    + K+ALDLF  M  + V+PN  TF S+L AC+ +  +
Sbjct: 295 FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSL 354

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           + G ++ S +   F +  +V     ++D+  + G ++ ++KL E +  ++++  W  ++
Sbjct: 355 DLGKQIHSCVL-KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELP-DRNDVTWNTII 411



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/384 (21%), Positives = 150/384 (39%), Gaps = 105/384 (27%)

Query: 151 RCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           +C   LDS++   +++   R+  D + G+ +H  +LK G  +D F    L++ Y +   +
Sbjct: 27  QCLSALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSL 86

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL--- 242
            DA +LFD+MP  + +++  +                           N F+   +L   
Sbjct: 87  QDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLL 146

Query: 243 ---------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                      GTA+ID Y+  G++D AR +FD +  K+++SW+
Sbjct: 147 VSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWT 206

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC------------------- 316
            M+A Y  +   +++L LF  M      PN  T    L +C                   
Sbjct: 207 GMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKG 266

Query: 317 ----------------SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
                           + +G + +  RLF  M      + D+  ++ M+    ++ R  E
Sbjct: 267 CYDHDLFVGIALLELYAKSGEIIDAQRLFEEM-----PKTDLIPWSLMIARYAQSDRSKE 321

Query: 361 ALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN- 416
           AL L   M   SV  +   + ++L AC    ++DL +     +L+    +    V +SN 
Sbjct: 322 ALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSN---VFVSNA 378

Query: 417 ---VYANAGRWQDVAKIRDLMTRR 437
              VYA  G  ++  K+ + +  R
Sbjct: 379 IMDVYAKCGEIENSMKLFEELPDR 402


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/490 (42%), Positives = 303/490 (61%), Gaps = 48/490 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + +++  N ++  +  +  +  A  +F+ M+E+D  +WS M+  + +    ++  E FR 
Sbjct: 343 IKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRM 402

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
             R G++ +  +L  V+  C    ++  GR IH  +++S  D                  
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD------------------ 444

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                        LDV + + ++ MY KCG++  A+++FDR   
Sbjct: 445 -----------------------------LDVYVASVLLSMYIKCGNLAKAKQVFDRFAV 475

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+V+ W+++I  Y  HG G +AL +F  M  S ++P+ +TFV +L ACS+TG V++GL +
Sbjct: 476 KDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEI 535

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F+SM   + V   ++HY CMVDLLGRAG+L+EA+ LIE M +E D  +WGALLGACR H 
Sbjct: 536 FNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHM 595

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
            +DLAE+AAK LL  +P+N G ++LLSN+YA+ GRW DVA++R  M  RR+ K PG +WI
Sbjct: 596 KLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWI 655

Query: 449 EVENKIHQFSVGDST-HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
            VE K+H+F+ GDS+ HP+  EI R+L  LS  L  AGY PD +F LHDVDEE KV +L 
Sbjct: 656 VVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLE 715

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLA+A+GL+  P G  IR+MKNLRVCGDCH+ IK ++ +T R II+RDANRFHHF+
Sbjct: 716 YHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFK 775

Query: 568 GGACSCRDYW 577
            G+CSCRDYW
Sbjct: 776 DGSCSCRDYW 785



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 173/396 (43%), Gaps = 82/396 (20%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIR-----QVHAQIVAGGTL--TNLIVANKLLYIYALHK 106
           F R V  +F+ S+ +  RN    R     Q+    V    +   N+I  N ++  Y  +K
Sbjct: 84  FFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNK 143

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
              +A  +F+ M ER+++SW+ +V G                +I  GM          I 
Sbjct: 144 RPQEAQNMFDKMSERNTISWNGLVSG----------------YINNGM----------IN 177

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
             R+    V  R+    V+            A+V  Y K  +I +A  LF QMP +++V+
Sbjct: 178 EARE----VFDRMPERNVVS---------WTAMVRGYVKEGMISEAETLFWQMPEKNVVS 224

Query: 227 WTVMIGANKFLL------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           WTVM+G    LL                  DV+  T +I  Y + G +  AR +FD M +
Sbjct: 225 WTVMLGG---LLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +NV+SW+ MI  Y  + Q   A  LF +M       N +++ ++L   ++ G ++E   L
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASEL 337

Query: 329 FSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           F++M       P      C  M+   G+ G + +A ++ + M  EKDEG W A++     
Sbjct: 338 FNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIKVYE- 388

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            K ++L  +    +++R+   P    L+S +   AG
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG 424



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 37/269 (13%)

Query: 189 LDIDQFVCA-------ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           L +++F C+       +L+  Y++   I+ AR +FD+M  +++++W  ++          
Sbjct: 87  LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146

Query: 234 ---NKF----LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
              N F      + I    ++  Y   G I+ ARE+FDRM ++NV+SW+AM+  Y   G 
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
             +A  LF  M    V    +++  +L      G ++E  RLF     D     DV   T
Sbjct: 207 ISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLF-----DMMPEKDVVTRT 257

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            M+    + GRL EA  L + M   ++   W  ++     ++ VD+    A+ L E  P+
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMP-RRNVVSWTTMITGYVQNQQVDI----ARKLFEVMPE 312

Query: 407 -NPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            N   +  +   Y N GR  + +++ + M
Sbjct: 313 KNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 22/210 (10%)

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           +I   ++I  Y++ G I+ AR +FD MR KN+ISW++++A Y  + + ++A ++F  M S
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-S 156

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            R   N I++  L+    + G++ E   +F  M +      +V  +T MV    + G + 
Sbjct: 157 ER---NTISWNGLVSGYINNGMINEAREVFDRMPE-----RNVVSWTAMVRGYVKEGMIS 208

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV-- 417
           EA  L   M  EK+   W  +LG       +D     A  L +  P+     V  +N+  
Sbjct: 209 EAETLFWQMP-EKNVVSWTVMLGGLLQEGRID----EACRLFDMMPEK--DVVTRTNMIG 261

Query: 418 -YANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
            Y   GR  +   + D M RR    +  WT
Sbjct: 262 GYCQVGRLVEARMLFDEMPRR---NVVSWT 288



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 27/240 (11%)

Query: 58  VDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           + P F   IS L  C  +  +   R++HAQ+V      ++ VA+ LL +Y     L  A 
Sbjct: 408 IRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAK 467

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+    +D V W+ ++ G+++    +     F +    G+  D  T   V+ AC    
Sbjct: 468 QVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTG 527

Query: 173 DIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
           ++  G  I +  +++   ++Q +   A +VD+  +   +++A  L ++MP   D + W  
Sbjct: 528 NVKKGLEIFN-SMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 230 MIGANKFLLDVILGTAVI------------------DMYAKCGSIDSAREIFDRMRQKNV 271
           ++GA +  + + L                       ++YA  G  D   E+   MR + V
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/490 (42%), Positives = 303/490 (61%), Gaps = 48/490 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + +++  N ++  +  +  +  A  +F+ M+E+D  +WS M+  + +    ++  E FR 
Sbjct: 343 IKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRM 402

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
             R G++ +  +L  V+  C    ++  GR IH  +++S  D                  
Sbjct: 403 MQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFD------------------ 444

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                        LDV + + ++ MY KCG++  A+++FDR   
Sbjct: 445 -----------------------------LDVYVASVLLSMYIKCGNLAKAKQVFDRFAV 475

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+V+ W+++I  Y  HG G +AL +F  M  S ++P+ +TFV +L ACS+TG V++GL +
Sbjct: 476 KDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEI 535

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F+SM   + V   ++HY CMVDLLGRAG+L+EA+ LIE M +E D  +WGALLGACR H 
Sbjct: 536 FNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHM 595

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
            +DLAE+AAK LL  +P+N G ++LLSN+YA+ GRW DVA++R  M  RR+ K PG +WI
Sbjct: 596 KLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWI 655

Query: 449 EVENKIHQFSVGDST-HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
            VE K+H+F+ GDS+ HP+  EI R+L  LS  L  AGY PD +F LHDVDEE KV +L 
Sbjct: 656 VVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHDVDEEEKVQSLE 715

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLA+A+GL+  P G  IR+MKNLRVCGDCH+ IK ++ +T R II+RDANRFHHF+
Sbjct: 716 YHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREIILRDANRFHHFK 775

Query: 568 GGACSCRDYW 577
            G+CSCRDYW
Sbjct: 776 DGSCSCRDYW 785



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 173/396 (43%), Gaps = 82/396 (20%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIR-----QVHAQIVAGGTL--TNLIVANKLLYIYALHK 106
           F R V  +F+ S+ +  RN    R     Q+    V    +   N+I  N ++  Y  +K
Sbjct: 84  FFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNK 143

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
              +A  +F+ M ER+++SW+ +V G                +I  GM          I 
Sbjct: 144 RPQEAQNMFDKMSERNTISWNGLVSG----------------YINNGM----------IN 177

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
             R+    V  R+    V+            A+V  Y K  +I +A  LF QMP +++V+
Sbjct: 178 EARE----VFDRMPERNVVS---------WTAMVRGYVKEGMISEAETLFWQMPEKNVVS 224

Query: 227 WTVMIGANKFLL------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           WTVM+G    LL                  DV+  T +I  Y + G +  AR +FD M +
Sbjct: 225 WTVMLGG---LLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +NV+SW+ MI  Y  + Q   A  LF +M       N +++ ++L   ++ G ++E   L
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASEL 337

Query: 329 FSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           F++M       P      C  M+   G+ G + +A ++ + M  EKDEG W A++     
Sbjct: 338 FNAM-------PIKSVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIKVYE- 388

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            K ++L  +    +++R+   P    L+S +   AG
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAG 424



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 37/269 (13%)

Query: 189 LDIDQFVCA-------ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           L +++F C+       +L+  Y++   I+ AR +FD+M  +++++W  ++          
Sbjct: 87  LVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQ 146

Query: 234 ---NKF----LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
              N F      + I    ++  Y   G I+ ARE+FDRM ++NV+SW+AM+  Y   G 
Sbjct: 147 EAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGM 206

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
             +A  LF  M    V    +++  +L      G ++E  RLF     D     DV   T
Sbjct: 207 ISEAETLFWQMPEKNV----VSWTVMLGGLLQEGRIDEACRLF-----DMMPEKDVVTRT 257

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            M+    + GRL EA  L + M   ++   W  ++     ++ VD+    A+ L E  P+
Sbjct: 258 NMIGGYCQVGRLVEARMLFDEMP-RRNVVSWTTMITGYVQNQQVDI----ARKLFEVMPE 312

Query: 407 -NPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            N   +  +   Y N GR  + +++ + M
Sbjct: 313 KNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 22/210 (10%)

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           +I   ++I  Y++ G I+ AR +FD MR KN+ISW++++A Y  + + ++A ++F  M S
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-S 156

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            R   N I++  L+    + G++ E   +F  M +      +V  +T MV    + G + 
Sbjct: 157 ER---NTISWNGLVSGYINNGMINEAREVFDRMPE-----RNVVSWTAMVRGYVKEGMIS 208

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV-- 417
           EA  L   M  EK+   W  +LG       +D     A  L +  P+     V  +N+  
Sbjct: 209 EAETLFWQMP-EKNVVSWTVMLGGLLQEGRID----EACRLFDMMPEK--DVVTRTNMIG 261

Query: 418 -YANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
            Y   GR  +   + D M RR    +  WT
Sbjct: 262 GYCQVGRLVEARMLFDEMPRR---NVVSWT 288



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 27/240 (11%)

Query: 58  VDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           + P F   IS L  C  +  +   R++HAQ+V      ++ VA+ LL +Y     L  A 
Sbjct: 408 IRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAK 467

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+    +D V W+ ++ G+++    +     F +    G+  D  T   V+ AC    
Sbjct: 468 QVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTG 527

Query: 173 DIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
           ++  G  I +  +++   ++Q +   A +VD+  +   +++A  L ++MP   D + W  
Sbjct: 528 NVKKGLEIFN-SMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGA 586

Query: 230 MIGANKFLLDVILGTAVI------------------DMYAKCGSIDSAREIFDRMRQKNV 271
           ++GA +  + + L                       ++YA  G  D   E+   MR + V
Sbjct: 587 LLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 324/557 (58%), Gaps = 37/557 (6%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD    IS L+ C N   +   + VH+  +       +  +N LL +Y+    L  A  +
Sbjct: 249 VDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRV 308

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M ER+ VSW+ M+ G+++           ++  + G++LD   +  ++ AC     +
Sbjct: 309 FEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSL 368

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
             G+ +HD +  + +  + FVC AL+DMYAKC  ++ A  +F  M  +D+++W  M+G  
Sbjct: 369 DNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGEL 428

Query: 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                           N +  D  +  A++D+Y KCG +  AR 
Sbjct: 429 KPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARL 488

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD +  K+++SW+ MIA YG HG G +A+  F  M  + + P+ ++F+S+LYACSH+GL
Sbjct: 489 LFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGL 548

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E+G R F  M +DF + P ++HY CMVDLL R G L +A K IE++ +  D  +WGALL
Sbjct: 549 LEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALL 608

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
             CRI+ +++LAE  A+ + E +P+N G+YVLL+N+YA A + ++V ++R+ + ++ L+K
Sbjct: 609 CGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRK 668

Query: 442 IPGWTWIEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
            PG +WIE++ +++ F  G +S+HP S++I  +L  +  K++  GY P T + L + DE 
Sbjct: 669 NPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEM 728

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLA+AFGL+  P    IR+ KNLRVCGDCH   K +S  TRR I++RD+
Sbjct: 729 QKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDS 788

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSCR +W
Sbjct: 789 NRFHHFKDGYCSCRGFW 805



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           +L++ T   V++ C   K +  G+ +H I+  + + +D+ +   LV  YA C  + + R+
Sbjct: 96  ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRR 155

Query: 215 LFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +FD M  +++  W  M+        F   + L   +++   +    +SA E+FD++  ++
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VISW++MI+ Y  +G  ++ L ++  M+   +  +  T +S+L  C+++G +  G  + S
Sbjct: 216 VISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 331 -SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            ++   F  R  +     ++D+  + G LD AL++ E M  E++   W +++  
Sbjct: 276 LAIKSSFERR--INFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAG 326



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 142/310 (45%), Gaps = 35/310 (11%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + +RD +SW+ M+ G+            +++ +  G+ +D  T+  V+  C +
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H + +KS  +        L+DMY+KC  +D A ++F++M  R++V+WT M
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSM 323

Query: 231 I----------GANKFL---------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           I          GA   L         LDV+  T+++   A+ GS+D+ +++ D ++  N+
Sbjct: 324 IAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNM 383

Query: 272 IS----WSAMIAAYGYHGQGKKALDLFPMMLSSRVL----------PNRITFVSLLYACS 317
            S     +A++  Y   G  + A  +F  M+   ++          P+  T   +L AC+
Sbjct: 384 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACA 443

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
               +E G  +   +  +     D      +VDL  + G L  A +L+  M   KD   W
Sbjct: 444 SLSALERGKEIHGYILRN-GYSSDRHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSW 501

Query: 378 GALLGACRIH 387
             ++    +H
Sbjct: 502 TVMIAGYGMH 511


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/529 (41%), Positives = 320/529 (60%), Gaps = 50/529 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH   V  G+  +L V N L+ +YA    + +A  +F+ +KE+D VSW+ MV G+S++
Sbjct: 33  KAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQI 92

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F +    F +     ++L+  +   VI A   R                GL      C
Sbjct: 93  GRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR----------------GLG-----C 131

Query: 197 AALVDMYAKCK--VIDDARQLFDQMPTRD------LVTWTVMIGANKFLLDVILG----- 243
             L D++ + +    +DA +LF  M  +D        T +  + A   L  + LG     
Sbjct: 132 ETL-DVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA 190

Query: 244 ---------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                            +IDMYAK G ID AR +FD ++QKN +SW++++  YG HG+GK
Sbjct: 191 YILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGK 250

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL++F  M    + P+ +T + +LYACSH+G++++G+  F+SM  +F V P  +HY CM
Sbjct: 251 EALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACM 310

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGRAGRL+EA++LIE M +E    +W ALL  CRIH NV+L E AAK LLE   +N 
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND 370

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
           G Y LLSN+YANA RW+DVA++R LM    ++K PG +W++ +     F V D THPQS+
Sbjct: 371 GSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSK 430

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +IY +L +L++++++ GY+P+T+F LHDVD+E KV  L+ HSEKLA+A+G++ +  G  I
Sbjct: 431 QIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPI 490

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI KNLRVCGDCH+ I ++S I    II+RD++RFHHF+ G+CSC  YW
Sbjct: 491 RITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 125/255 (49%), Gaps = 38/255 (14%)

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           M+ D  +L  V+ AC      + G+ +H I ++SG   D FV  ALVDMYAKC ++D+A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---- 269
           ++FD++  +D+V+W  M+                  Y++ G  + A  +F++MR++    
Sbjct: 69  KVFDRIKEKDVVSWNAMVNG----------------YSQIGRFEDALGLFEKMREENIEL 112

Query: 270 NVISWSAMIAAYG---------------YHGQGKKALDLFPMMLSSR--VLPNRITFVSL 312
           NV+SWSA+IAA+                 HG+   AL+LF  M      V PN  T    
Sbjct: 113 NVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCA 172

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC+    +  G ++ + +  +      +    C++D+  ++G +D A  + +++  +K
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLK-QK 231

Query: 373 DEGLWGALLGACRIH 387
           +   W +L+    +H
Sbjct: 232 NFVSWTSLMTGYGMH 246



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 8/194 (4%)

Query: 58  VDPKFFISS--LLSCRNIFQIR---QVHAQIVAGGTLTN-LIVANKLLYIYALHKALTDA 111
           V P  F  S  L++C  +  +R   Q+HA I+     +  L VAN L+ +YA    +  A
Sbjct: 162 VKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVA 221

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F+ +K+++ VSW+ ++ G+          E F E  R G+Q D  TL  V+ AC   
Sbjct: 222 RFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHS 281

Query: 172 KDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
             I  G    + +  + G+   Q   A +VD+  +   +++A +L + M      + W  
Sbjct: 282 GMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVA 341

Query: 230 MIGANKFLLDVILG 243
           ++   +   +V LG
Sbjct: 342 LLSGCRIHANVELG 355


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/597 (38%), Positives = 327/597 (54%), Gaps = 63/597 (10%)

Query: 39  PMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98
           P  P  PM     C    + +    +S L  C ++ +++Q+ A  +     ++L V  K 
Sbjct: 4   PAPPVTPM-----CPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKF 58

Query: 99  LYIYALHKALTD---AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           +   +L+   T    AH LF+ + + D V ++ M  G+++    +  F  F + +  G+ 
Sbjct: 59  INFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLF 118

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D YT P +++AC   K +  GR +H + +K GL  + +VC  L++MY  C  +D AR++
Sbjct: 119 PDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRV 178

Query: 216 FDQMPTRDLVTWTV-----------------------------------------MIGA- 233
           FD++    +VT+                                           ++GA 
Sbjct: 179 FDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGAL 238

Query: 234 ------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                       N F   V + TA+IDMYAKCGS+D A  +F+ M  ++  +WSAMI AY
Sbjct: 239 DLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAY 298

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG G KA+ LF  M  +   P+ ITF+ LLYACSHTGLVEEG   F  M D + V P 
Sbjct: 299 AIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPG 358

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           +KHY CMVDLLGRAGRL+EA + I  + +     LW  LL AC  H NV+L +   + + 
Sbjct: 359 IKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIF 418

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E    + G Y++LSN+ A AGRW+DV  +R LM  R + KIPG + +EV N +H+F  GD
Sbjct: 419 ELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGD 478

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLI 520
             H  S ++++ L  L ++L+L GY+P+T+   H D+++E K   L  HSEKLAI FGL+
Sbjct: 479 GVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLL 538

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            TP GT IR++KNLRVCGDCHS  K +S I  R II+RD  RFHHF+ G CSC DYW
Sbjct: 539 NTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 327/576 (56%), Gaps = 59/576 (10%)

Query: 61   KFFISSLL-SCRNI----FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            +F ++S+L +C ++    +   Q+HA  +  G + +  V+  L+ +Y+    + +A  LF
Sbjct: 1036 QFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF 1095

Query: 116  NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
                  D  SW+ ++ G+    DF      +      G + D  TL    +A      + 
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLK 1155

Query: 176  MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV---------- 225
             G+ IH +V+K G ++D FV + ++DMY KC  ++ AR++F ++P+ D V          
Sbjct: 1156 QGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCV 1215

Query: 226  -------------------------TWTVMIGANKFL-------------------LDVI 241
                                     T+  ++ A   L                    D  
Sbjct: 1216 ENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPF 1275

Query: 242  LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            + T+++DMYAKCG+I+ AR +F R   + + SW+AMI     HG  K+AL  F  M S  
Sbjct: 1276 VMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRG 1335

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            V+P+R+TF+ +L ACSH+GLV E    F SM  ++ + P+++HY+C+VD L RAGR++EA
Sbjct: 1336 VMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEA 1395

Query: 362  LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             K+I SM  E    ++  LL ACR+  + +  +  A+ LL  +P +   YVLLSNVYA A
Sbjct: 1396 EKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAA 1455

Query: 422  GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
             +W++VA  R++M +  +KK PG++W++++NK+H F  GD +H +++ IY  +  + +++
Sbjct: 1456 NQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRI 1515

Query: 482  ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
               GY+PDT+F L DV+EE K  +LY HSEKLAIA+GL+ TP  T +R++KNLRVCGDCH
Sbjct: 1516 REEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 1575

Query: 542  SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            S IK++S + +R I++RDANRFHHF  G CSC DYW
Sbjct: 1576 SAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 166/382 (43%), Gaps = 45/382 (11%)

Query: 38   NPMNPRVPMQMG-PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN 96
            NP+ PR  +    P C F+        +   ++  ++   ++ HA+I+  G   +  V N
Sbjct: 644  NPLTPRAHLIHSLPQC-FS-------ILRQAIAASDLSLGKRAHARILTSGHHPDRFVTN 695

Query: 97   KLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGGFSKVADFI-NCFETFREFIRCG 153
             L+ +YA   +L+ A  LF+   +  RD V+W+ ++   +  AD   + F  FR   R  
Sbjct: 696  NLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSV 755

Query: 154  MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
            +    +TL  V + C           +H   +K GL  D FV  ALV++YAK  +I +AR
Sbjct: 756  VSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREAR 815

Query: 214  QLFDQMPTRDLVTWTVMIGA--------NKFLL------------DVILGTAVIDMYAKC 253
             LFD M  RD+V W VM+ A           LL            DV L T  +    KC
Sbjct: 816  VLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRT--LSRVVKC 873

Query: 254  GSIDSAREIFDRMRQK---------NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
                   + F     K         +VI W+  ++ +   G+  +A+D F  M++SRV  
Sbjct: 874  KKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVAC 933

Query: 305  NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            + +TFV +L   +    +E G ++   +     +   V    C++++  +AG +  A  +
Sbjct: 934  DGLTFVVMLTVVAGLNCLELGKQIHGIVMRS-GLDQVVSVGNCLINMYVKAGSVSRARSV 992

Query: 365  IESMSVEKDEGLWGALLGACRI 386
               M+ E D   W  ++  C +
Sbjct: 993  FGQMN-EVDLISWNTMISGCTL 1013



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 61/374 (16%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            +Q+H  ++  G    + V N L+ +Y    +++ A ++F  M E D +SW+ M+ G + +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCT-L 1013

Query: 137  ADFINC-FETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHDIVLKSGLDIDQF 194
            +    C    F   +R  +  D +T+  V+RAC        +   IH   +K+G+ +D F
Sbjct: 1014 SGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSF 1073

Query: 195  VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-------------------------- 228
            V  AL+D+Y+K   +++A  LF      DL +W                           
Sbjct: 1074 VSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESG 1133

Query: 229  ------VMIGANKF---LLDVILGTAV----------IDMYAKCGSID---------SAR 260
                   ++ A K    L+ +  G  +          +D++   G +D         SAR
Sbjct: 1134 ERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESAR 1193

Query: 261  EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             +F  +   + ++W+ MI+    +GQ + AL  +  M  S+V P+  TF +L+ ACS   
Sbjct: 1194 RVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLT 1253

Query: 321  LVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
             +E+G ++ +++   + A  P V   T +VD+  + G +++A  L +  +  +    W A
Sbjct: 1254 ALEQGRQIHANIVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTRRIAS-WNA 1310

Query: 380  LLGACRIHKNVDLA 393
            ++     H N   A
Sbjct: 1311 MIVGLAQHGNAKEA 1324


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 308/555 (55%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+H Q++  G   N+ V + L+ +YA H  L  A  +   ++E D VSW+ M+ G+++ 
Sbjct: 435 EQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQH 494

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    + F+E    G++ D+      I AC   + +  G+ IH     SG   D  + 
Sbjct: 495 DLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIG 554

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
            ALV +YA+C    DA   F+++  +D ++W  +I                         
Sbjct: 555 NALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVE 614

Query: 233 ANKFLL-DVILGTA-----------------------------VIDMYAKCGSIDSAREI 262
           AN F     +  TA                             +I +Y+KCGSI+ A+  
Sbjct: 615 ANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKRE 674

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M +KNV+SW+AMI  Y  HG G +A+ LF  M    ++PN +TFV +L ACSH GLV
Sbjct: 675 FFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLV 734

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EGL  F SM  +  + P  +HY C+VDLLGRA  L  A + IE M +E D  +W  LL 
Sbjct: 735 NEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLS 794

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC +HKN+++ E AA+ LLE +P++   YVLLSN+YA +G+W    + R +M  R +KK 
Sbjct: 795 ACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKE 854

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV+N IH F VGD  HP +E+IY  +  L+E+    GY+ D    L+DV++E K
Sbjct: 855 PGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQK 914

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               Y HSEKLA+AFGL++      IR++KNLRVC DCH++IK VS I+ R I+VRDA R
Sbjct: 915 DPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYR 974

Query: 563 FHHFEGGACSCRDYW 577
           FHHFEGG CSC+DYW
Sbjct: 975 FHHFEGGVCSCKDYW 989



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 168/392 (42%), Gaps = 62/392 (15%)

Query: 52  CQFTRSV---DPKFFISSLLSCRNI--FQI-RQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           CQ  +S     P  F S L +C  I  F++  Q+H  IV  G  +   V N L+ +Y+  
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             L  A  +F+ M  RD +S++ ++ G ++        + F +     M+ D  T+  ++
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
            AC        G+ +H  V+K G+  D  +  +L+D+Y KC  I+ A + F    T ++V
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 226 TWTVMIGA------------------------NKFLLDVILGT----------------- 244
            W VM+ A                        N++    IL T                 
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 245 -------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                         +IDMYAK G +D+AR I  R+R+++V+SW+AMIA Y  H    +AL
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEAL 501

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            LF  M +  +  + I F S + AC+    + +G ++ +  +       D+     +V L
Sbjct: 502 KLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYIS-GYSEDLSIGNALVSL 560

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             R GR  +A    E +   KD   W AL+  
Sbjct: 561 YARCGRAQDAYLAFEKIDA-KDNISWNALISG 591



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 178/406 (43%), Gaps = 63/406 (15%)

Query: 59  DPKFFISSLLSC---RNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           D   F S L +C   +  FQ+  Q+HA+I+  G  ++ +V N L+ +Y+ +  +  A  +
Sbjct: 110 DESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLV 169

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  +  +DSVSW  M+ G S+          F +  +  +    Y    V+ AC   +  
Sbjct: 170 FERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELF 229

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
            +G  +H  ++K GL  + FVC ALV +Y++   +  A Q+F +M  RD +++  +I   
Sbjct: 230 KLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGL 289

Query: 234 -------------NKFLLD----------------------------------------V 240
                         K  LD                                        +
Sbjct: 290 AQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDL 349

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           I+  +++D+Y KC  I++A E F     +NV+ W+ M+ AYG  G   ++  +F  M   
Sbjct: 350 IIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIE 409

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            ++PN+ T+ S+L  C+  G ++ G ++ + +      + +V   + ++D+  + G LD 
Sbjct: 410 GLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS-GFQFNVYVCSVLIDMYAKHGELDT 468

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           A  +++ +  E+D   W A++     H   DL   A K   E + Q
Sbjct: 469 ARGILQRLR-EEDVVSWTAMIAGYTQH---DLFAEALKLFQEMENQ 510



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 125/320 (39%), Gaps = 88/320 (27%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ +  T  ++   C +   ++  + +H  + KSG D +  + + L+D+Y     +D+A
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 213 RQLFDQMPTRDLVTWTVMIGA--NKFLLDVILG--------------------------- 243
            +LFD +P+ ++  W  +I     K L   +LG                           
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 244 --------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                       +ID+Y+K G +D A+ +F+R+  K+ +SW AM
Sbjct: 125 KAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAM 184

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL--------- 328
           I+    +G+  +A+ LF  M  S V+P    F S+L AC+   L + G +L         
Sbjct: 185 ISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGL 244

Query: 329 ------------FSSMWDDFAV---------RPDVKHYTCMVDLLGRAGRLDEALKLIES 367
                         S W +            R D   Y  ++  L + G  D AL+L E 
Sbjct: 245 SSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEK 304

Query: 368 MSVE---KDEGLWGALLGAC 384
           M ++    D     +LL AC
Sbjct: 305 MQLDCMKPDCVTVASLLSAC 324



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 29/294 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           ++   +++HA+I   G     ++ ++L+ IY  H  + +A  LF+ +   +   W+ ++ 
Sbjct: 25  SLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVIS 84

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK-DIVMGRLIHDIVLKSGLD 190
           G             F   I   +  D  T   V+RAC   K    +   IH  ++  G  
Sbjct: 85  GLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFG 144

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVIL----- 242
               VC  L+D+Y+K   +D A+ +F+++  +D V+W  MI     N    + IL     
Sbjct: 145 SSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQM 204

Query: 243 -GTAVIDMYAKCGSIDSA---REIFDRMRQKN--VISW---------SAMIAAYGYHGQG 287
             +AVI       S+ SA    E+F    Q +  ++ W         +A++  Y   G  
Sbjct: 205 HKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNL 264

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             A  +F  M       +RI++ SL+   +  G  +  L+LF  M  D  ++PD
Sbjct: 265 IAAEQIFSKMHRR----DRISYNSLISGLAQRGFSDRALQLFEKMQLD-CMKPD 313


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 325/569 (57%), Gaps = 57/569 (10%)

Query: 66  SLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           +L SC  +  +   R + A  V  G + +  V + L+++YA  + +  A  LF+ ++E  
Sbjct: 125 ALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENG 184

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            V W+ ++  + K  +++   E F+  +  G+  D  TL  V+ AC    D  +G+ + +
Sbjct: 185 VVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAE 244

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------ 230
            V + GL  ++ +  AL+DMYAKC  +  AR+LFD M +RD+V W+ M            
Sbjct: 245 YVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 304

Query: 231 -----------------------------IGA-------------NKFLLDVILGTAVID 248
                                        +GA              +  L +ILGTA++D
Sbjct: 305 ALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVD 364

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            YAKCG ID A E F+ M  KN  +W+A+I     +G+G++AL+LF  M  + + P  +T
Sbjct: 365 FYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVT 424

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +L ACSH+ LVEEG R F SM  D+ ++P  +HY C+VDLLGRAG +DEA + I +M
Sbjct: 425 FIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTM 484

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +E +  +W ALL +C +HKNV++ E A K ++   P + G Y+LLSN+YA+ G+W++ A
Sbjct: 485 PIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAA 544

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
            IR  M  R ++K PG + IE++  + +F   DS HPQ +EIY+ +  + +++++AGYIP
Sbjct: 545 MIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIP 604

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           +T     +VDE  K  ++  HSEKLAIAFGL+    G  IR+ KNLRVC DCHS  K +S
Sbjct: 605 NTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLIS 664

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  R I+VRD NRFHHF+ G CSC DYW
Sbjct: 665 KVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 56/279 (20%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D +T+   +++C     + +GR I    +K GL  D+FV ++L+ MYA C+ +  A+ LF
Sbjct: 118 DQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLF 177

Query: 217 DQMPTRDLVTWTVMIGA---NKFLLDVI-------------------------------- 241
           D +    +V W  +I A   N   ++V+                                
Sbjct: 178 DAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAK 237

Query: 242 -------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                              L TA+IDMYAKCG +  AR +FD M+ ++V++WSAMI+ Y 
Sbjct: 238 LGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYT 297

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
              Q ++AL LF  M  + V PN +T VS+L AC+  G +E G +   S      +   +
Sbjct: 298 QADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETG-KWVHSYIRRKRLSLTI 356

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
              T +VD   + G +D+A++  ESM V K+   W AL+
Sbjct: 357 ILGTALVDFYAKCGCIDDAVEAFESMPV-KNSWTWTALI 394


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 341/589 (57%), Gaps = 62/589 (10%)

Query: 51  DCQFTRSVDPKFFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYA--- 103
           D  F+     +F +S ++S C N+  +   +Q+H+Q +  G   +  V   L+ +YA   
Sbjct: 261 DMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCS 320

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLP 162
           +  ++  A  +F+ + + +  SW+ M+ G+ +   +     + FR  I   +  + +T  
Sbjct: 321 VDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFS 380

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
             ++AC +   + +G  +    +K G      V  +L+ MYA+   IDDAR+ FD +  +
Sbjct: 381 STLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEK 440

Query: 223 DLVTWTVMI------------------------GANKFLLDVIL------GT-------- 244
           +L+++  +I                        GA+ F    +L      GT        
Sbjct: 441 NLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIH 500

Query: 245 ----------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                           A+I MY++CG+I+SA ++F+ M  +NVISW+++I  +  HG   
Sbjct: 501 ARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFAT 560

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL+LF  ML   V PN +T++++L ACSH GLV EG + F SM+ +  V P ++HY C+
Sbjct: 561 QALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACI 620

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VD+LGR+G L EA++ I SM  + D  +W   LGACR+H N++L + AAK ++E++P +P
Sbjct: 621 VDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDP 680

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             Y+LLSN+YA+  +W +V+ IR  M  + L K  G +W+EVENK+H+F VGD++HP++ 
Sbjct: 681 AAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAA 740

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           EIY  L  LS K++  GY+P+ +F LHDV+EE K   L+ HSEK+A+AFGLI+T +   I
Sbjct: 741 EIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPI 800

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+ KNLR+CGDCHS IK++S  T R IIVRDANRFHH + G CSC +YW
Sbjct: 801 RVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 156/350 (44%), Gaps = 70/350 (20%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KERDSVSWSVMVGGFSKVA 137
           VH ++       + +  N L+ +Y+       A ++F  M   RD +SWS MV  F+   
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNN 147

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVC 196
                  TF + I  G   + Y      RAC   + + +G  I   V+K+G L  D  V 
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVG 207

Query: 197 AALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVI---- 241
             L+DM+ K +  +  A ++F++MP R+ VTWT+MI           A    LD+I    
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGY 267

Query: 242 ----------------------------------------LGTAVIDMYAKC---GSIDS 258
                                                   +G  +I+MYAKC   GS+ +
Sbjct: 268 EPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCA 327

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYH-GQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           AR+IFD++   NV SW+AMI  Y    G  ++ALDLF  M+ + V+PN  TF S L AC+
Sbjct: 328 ARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACA 387

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALK 363
           +   +  G ++F+      AV+       C    ++ +  R+GR+D+A K
Sbjct: 388 NLAALRIGEQVFTH-----AVKLGFSSVNCVANSLISMYARSGRIDDARK 432



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 59/319 (18%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  +F  M ER++V+W++M+    +        + F + I  G + D +TL  VI A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---IDDARQLFDQMPTRDL 224
           C + + +++G+ +H   ++ GL +D+ V   L++MYAKC V   +  AR++FDQ+   ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 225 VTWTVMI-------GANKFLLDVILG---------------------------------- 243
            +WT MI       G ++  LD+  G                                  
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT 400

Query: 244 --------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                          ++I MYA+ G ID AR+ FD + +KN+IS++ +I AY  +   ++
Sbjct: 401 HAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEE 460

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL+LF  +    +  +  TF SLL   +  G + +G ++ + +     ++ +      ++
Sbjct: 461 ALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNALI 519

Query: 350 DLLGRAGRLDEALKLIESM 368
            +  R G ++ A ++ E M
Sbjct: 520 SMYSRCGNIESAFQVFEDM 538



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 101/243 (41%), Gaps = 57/243 (23%)

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           T    +  G   D  T    ++ C   +   +G L+H+ + +S L +D     +L+ +Y+
Sbjct: 53  TLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYS 112

Query: 205 KCKVIDDARQLFDQM-PTRDLVTWTVMIGA------------------------NKFLL- 238
           KC   + A  +F  M  +RDL++W+ M+                          N++   
Sbjct: 113 KCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFA 172

Query: 239 ---------------DVILG---------------TAVIDMYAKC-GSIDSAREIFDRMR 267
                          D I G                 +IDM+ K  G + SA ++F++M 
Sbjct: 173 AATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMP 232

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
           ++N ++W+ MI      G   +A+DLF  M+ S   P+R T   ++ AC++  L+  G +
Sbjct: 233 ERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQ 292

Query: 328 LFS 330
           L S
Sbjct: 293 LHS 295



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 3/146 (2%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
           LD +   ++I +Y+KCG  + A  IF  M   +++ISWSAM++ +  +  G +AL  F  
Sbjct: 99  LDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVD 158

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA- 355
           M+ +   PN   F +   ACS    V  G  +F  +     ++ DV     ++D+  +  
Sbjct: 159 MIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGR 218

Query: 356 GRLDEALKLIESMSVEKDEGLWGALL 381
           G L  A K+ E M  E++   W  ++
Sbjct: 219 GDLVSAFKVFEKMP-ERNAVTWTLMI 243


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 333/603 (55%), Gaps = 87/603 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F + S    +   + +Q+H  ++  G   +L V   L+ +YA +  L DAH +F+    R
Sbjct: 71  FLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR 130

Query: 122 DSVS-------------------------------WSVMVGGFSKVADFINCFETFREFI 150
           D VS                               W+ M+ G+++   +    E F+E +
Sbjct: 131 DVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMM 190

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+ AC   + + +GR +H  +   G   +  +  AL+D+Y+KC  ++
Sbjct: 191 KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVE 250

Query: 211 DARQLFDQMPTRDLVTWTVMIGA------------------------------------- 233
            A  LF+ +  +D+V+W  +IG                                      
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 234 ---------------NKFLLDVI----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                          +K L DV     L T++IDMYAKCG I++A ++F+ M  K++ SW
Sbjct: 311 HLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+     DLF  M  + + P+ ITFV LL ACSH+G ++ G  +F SM  
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ 430

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG +G   EA ++I++M +E D  +W +LL ACR H N++LAE
Sbjct: 431 DYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAE 490

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+NPG YVLLSN+YA AG W +VAK+R L+  + +KK+PG + IE+++++
Sbjct: 491 SFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEV 550

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F VGD  HP++ EIY ML  +   LE AG++PDT+  L +++EE K G L  HSEKLA
Sbjct: 551 HEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 610

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+T  GT + I+KNLRVC +CH   K VS I +R II RD  RFHHF  G CSC 
Sbjct: 611 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCN 670

Query: 575 DYW 577
           D+W
Sbjct: 671 DFW 673



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 179/340 (52%), Gaps = 29/340 (8%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A ++F  ++E + + W+ M+ G++  +D ++  + +   I  G+  +SYT PF++++C  
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
            K    G+ IH  VLK G + D +V  +L+ MYA+   ++DA ++FD+   RD+V++   
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSY--- 135

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                        TA+I  YA  G+I SA+E+FD +  K+V+SW+AMI+ Y   G  K+A
Sbjct: 136 -------------TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEA 182

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L+LF  M+ + V P+  T V++L AC+ +  VE G R   S  DD     ++K    ++D
Sbjct: 183 LELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELG-RQVHSWIDDHGFGSNLKIVNALID 241

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L  + G+++ A  L E +S  KD   W  L+G    H N+    +     + R  ++P  
Sbjct: 242 LYSKCGQVETACGLFEGLSC-KDVVSWNTLIGG-YTHMNLYKEALLLFQEMLRSGESPND 299

Query: 411 YVLLSNVYANA-------GRWQDV---AKIRDLMTRRRLK 440
             ++S + A A       GRW  V    K++D+     L+
Sbjct: 300 VTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR 339


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/551 (38%), Positives = 319/551 (57%), Gaps = 56/551 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G  +++ V+N L+ +Y+    L DA  +F+ M+ RD VSW+ ++  + +  D
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCA 197
                  F+     G++ D  T+  +        D  + R I   V++   LD D  +  
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           ALV+MYAK   ++ A  +FDQ+P +D ++W  +                           
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI 423

Query: 231 ---------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                          +GA             N   LDV + T +ID+Y KCG ++ A  +
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  + +   + W+A+IA+ G HG+G++AL LF  ML+ RV  + ITFVSLL ACSH+GLV
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG + F  M  ++ ++P +KHY CMVDLLGRAG L++A +L+ +M ++ D  +WGALL 
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLS 603

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC+I+ N +L  +A+  LLE   +N G+YVLLSN+YAN  +W+ V K+R L   R L+K 
Sbjct: 604 ACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKT 663

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ + V +K   F  G+ THP+  EIY+ L  LS K++  GY+PD +F   D++E+ K
Sbjct: 664 PGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEK 723

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LAIAFG+I+TP  + IRI KNLRVCGDCH+  K++S I+ R I+VRD+NR
Sbjct: 724 EQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNR 783

Query: 563 FHHFEGGACSC 573
           FHHF+ G CSC
Sbjct: 784 FHHFKDGICSC 794



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 207/442 (46%), Gaps = 71/442 (16%)

Query: 60  PKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           P F  F   L +C ++   ++VH  +   G   ++ VA  L+++Y+ +  L  AH +F  
Sbjct: 122 PDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVD 181

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  +D  SW+ M+ GF +  +              G+++D+ T+  ++  C    D++ G
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING 241

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN--- 234
            LIH  VLK GLD D FV  AL++MY+K   + DA+ +FDQM  RDLV+W  +I A    
Sbjct: 242 VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 235 -------KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR------------------QK 269
                  +F   + LG    D+     ++ S   IF ++                    K
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLL----TVVSLTSIFSQLSDQRISRSILGFVIRREWLDK 357

Query: 270 NVISWSAMIAAY---GY----------------------------HGQGKKALDLFPMML 298
           +V+  +A++  Y   GY                            +G   +A+D + MM 
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMME 417

Query: 299 SSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
             R  +PN+ T+VS++ A SH G +++G+++ + +  + ++  DV   TC++DL G+ GR
Sbjct: 418 ECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGR 476

Query: 358 LDEALKLIESMSVEKDEGL-WGALLGACRIHKNVDLAEMAAKSLL-ERQPQNPGHYVLLS 415
           L++A+ L     + +D  + W A++ +  IH   + A    K +L ER   +   +V L 
Sbjct: 477 LEDAMSLF--YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 416 NVYANAGRWQDVAKIRDLMTRR 437
           +  +++G   +  K  D+M + 
Sbjct: 535 SACSHSGLVDEGQKCFDIMQKE 556



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 196/449 (43%), Gaps = 100/449 (22%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           SC N+   +++HA ++  G   N++++ KL+ +Y  H  ++ + + F+ + +++  SW+ 
Sbjct: 31  SCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNS 90

Query: 129 MVGG---FSKVADFINCFETFREFIRCG---MQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           ++     F K  + +NC      F  CG   ++ D YT P +++AC     +V G+ +H 
Sbjct: 91  IISAYVRFGKYHEAMNCVNQL--FSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHC 145

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------G 232
            V K G + D FV A+LV +Y++  V+D A ++F  MP +D+ +W  MI          G
Sbjct: 146 CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAG 205

Query: 233 ANKFLL-------------------------DVILG-------------------TAVID 248
           A   L                          DVI G                    A+I+
Sbjct: 206 ALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALIN 265

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY+K G +  A+ +FD+M  ++++SW+++IAAY  +     AL  F  M    + P+ +T
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT 325

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDD--------FAVR-----PDVKHYTCMVDLLGRA 355
            VSL               +FS + D         F +R      DV     +V++  + 
Sbjct: 326 VVSL-------------TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL 372

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA--AKSLLER---QPQNPGH 410
           G ++ A  + + +   KD   W  L+     +    LA  A  A +++E       N G 
Sbjct: 373 GYMNCAHTVFDQLP-RKDTISWNTLVTG---YTQNGLASEAIDAYNMMEECRDTIPNQGT 428

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +V +   Y++ G  Q   KI   + +  L
Sbjct: 429 WVSIIPAYSHVGALQQGMKIHAKLIKNSL 457



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 2/206 (0%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  ++HA+++      ++ VA  L+ +Y     L DA +LF  +    SV W+ ++    
Sbjct: 444 QGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLG 503

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQ 193
                    + F++ +   ++ D  T   ++ AC     +  G+   DI+ K  G+    
Sbjct: 504 IHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSL 563

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
                +VD+  +   ++ A +L   MP + D   W  ++ A K   +  LGT   D   +
Sbjct: 564 KHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLE 623

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMI 278
             S +    +       N   W  +I
Sbjct: 624 VDSENVGYYVLLSNIYANTEKWEGVI 649


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/558 (37%), Positives = 319/558 (57%), Gaps = 61/558 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGF 133
           +QVH   +    +++  V+  L+  Y+ ++ + +A  LF    ER   D V+W+ M+ G+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF----ERHNFDLVAWNAMMAGY 492

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           ++  D     + F    + G + D +TL  V + C     I  G+ +H   +KSG D+D 
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--------------------- 232
           +V + ++DMY KC  +  A+  FD +P  D V WT MI                      
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612

Query: 233 -----------------------------ANKFLL----DVILGTAVIDMYAKCGSIDSA 259
                                        AN   L    D  +GT+++DMYAKCGSID A
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             +F R+   N+ +W+AM+     HG+GK+ L LF  M S  + P+++TF+ +L ACSH+
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GLV E  +   SM  D+ ++P+++HY+C+ D LGRAG + +A  LIESMS+E    ++  
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LL ACR+  + +  +  A  LLE +P +   YVLLSN+YA A +W ++   R +M   ++
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK PG++WIEV+NKIH F V D ++ Q+E IYR +  +   ++  GY+P+T+F L DV+E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E K   LY HSEKLA+AFGL++TP  T IR++KNLRVCGDCH+ +K+++ +  R I++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972

Query: 560 ANRFHHFEGGACSCRDYW 577
           ANRFH F+ G CSC DYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 64/363 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH   +  G    L V+N L+ +Y   +    A  +F+ M ERD +SW+ ++ G ++ 
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD-IVMGRLIHDIVLKSGLDIDQFV 195
              +     F + +RCG++ D YT+  V++A     + + + + +H   +K     D FV
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------------------- 232
             AL+D Y++ + + +A  LF++    DLV W  M+                        
Sbjct: 455 STALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513

Query: 233 -ANKFLLDVILGT------------------------------AVIDMYAKCGSIDSARE 261
            ++ F L  +  T                               ++DMY KCG + +A+ 
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQF 573

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            FD +   + ++W+ MI+    +G+ ++A  +F  M    VLP+  T  +L  A S    
Sbjct: 574 AFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA 633

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA---LKLIESMSVEKDEGLWG 378
           +E+G ++ ++         D    T +VD+  + G +D+A    K IE M++      W 
Sbjct: 634 LEQGRQIHANAL-KLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA----WN 688

Query: 379 ALL 381
           A+L
Sbjct: 689 AML 691



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 122/281 (43%), Gaps = 33/281 (11%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F+ + ++  ++   +  HA+I+         + N L+ +Y+   +LT A  +F+ M +RD
Sbjct: 45  FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104

Query: 123 SVSWSVMVGGFSK-----VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
            VSW+ ++  +++     V +    F  FR   +  +     TL  +++ C     +   
Sbjct: 105 LVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS 164

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
              H    K GLD D+FV  ALV++Y K   + + + LF++MP RD+V W +M+ A    
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA---Y 221

Query: 238 LDVILGTAVIDMYAK-------------------------CGSIDSAREIFDRMRQKNVI 272
           L++      ID+ +                           G + S     D      +I
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEII 281

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
             +  ++ Y + GQ    L  F  M+ S V  +++TF+ +L
Sbjct: 282 FRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG-----KKALDLFPMMLSS 300
           +I MY+KCGS+  AR +FD+M  ++++SW++++AAY    +      ++A  LF ++   
Sbjct: 80  LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V  +R+T   +L  C H+G V      F        +  D      +V++  + G++ E
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWAS-ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKE 198

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
              L E M   +D  LW  +L A
Sbjct: 199 GKVLFEEMPY-RDVVLWNLMLKA 220



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 45/267 (16%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           VA  L+ IY     + +   LF  M  RD V W++M+  + ++       +    F   G
Sbjct: 182 VAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSG 241

Query: 154 MQLDSYTLPFVIRACRDRKDIVM---------GRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           +  +  TL  + R   D  D               + +I+ ++   + +++ +       
Sbjct: 242 LNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNK-GLSEYLHSGQYSALL 300

Query: 205 KCKVIDDARQLFDQMPTRDL----VTWTVMIG-----------------ANKFLLDVIL- 242
           KC         F  M   D+    VT+ +M+                  A K  LD++L 
Sbjct: 301 KC---------FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLT 351

Query: 243 -GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
              ++I+MY K      AR +FD M ++++ISW+++IA    +G   +A+ LF  +L   
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRL 328
           + P++ T  S+L A S    + EGL L
Sbjct: 412 LKPDQYTMTSVLKAASS---LPEGLSL 435


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 330/565 (58%), Gaps = 39/565 (6%)

Query: 45  PMQMGPDCQFTRSVDPK----FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100
           P+   P+     +V P+      I  L +  + F++RQVHAQI+      +++   ++  
Sbjct: 42  PIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGL 101

Query: 101 IYALHKALTDAHALFNGMKER--DSVSWSVMVGGFSK---VADFINCFETFREFIRCGMQ 155
           + A   +   A  +F  ++++  ++  W+  +   ++     D I  F   R++  C   
Sbjct: 102 VCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCP-- 159

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D++T   V+RAC +  D+  GR++H +V K G         +++  Y +C    +A  L
Sbjct: 160 -DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR----SWTSMIAGYVQCGKAKEAIHL 214

Query: 216 FDQMPTRDL----VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAK 252
           F +M    +    VT   ++ A                   + F  +V +   +IDMY K
Sbjct: 215 FAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVK 274

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG ++ A ++F+ M ++ V+SWSAMI     HG+ ++AL LF  M    + PN +TF+ L
Sbjct: 275 CGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGL 334

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L+ACSH GL+ EG R F+SM  D+ + P ++HY CMVDLL RAG L EA + I +M ++ 
Sbjct: 335 LHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKP 394

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           +  +WGALLGACR+HKNV++AE A K LLE  P N G+YV+LSN+YA AGRW+D A++R 
Sbjct: 395 NGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRK 454

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
            M  R++KK PGW+ I V+  +H+F  G+ +HP +E+I++    L E++ L GY+P+T+ 
Sbjct: 455 FMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSV 514

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            L D++E  KV  +  HSEKLA+ FGL+ TP  T IRIMKNLR+C DCHS  K +SAI  
Sbjct: 515 VLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVN 574

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I+VRD NRFH F   +CSCRDYW
Sbjct: 575 REIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 314/554 (56%), Gaps = 55/554 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H+ I   G  +++ + N L+ +YA    L  A  LF  M +RD +SW+ ++ G+++  D
Sbjct: 352 IHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRED 411

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                  +++    G++    T   ++ AC +      G++IH+ +L+SG+  +  +  A
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANA 471

Query: 199 LVDMYAKCKVIDDARQLFDQMPTR-----------------------------------D 223
           L++MY +C  + +A+ +F+    R                                   D
Sbjct: 472 LMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPD 531

Query: 224 LVTWTVMIGANK-------------------FLLDVILGTAVIDMYAKCGSIDSAREIFD 264
            +T+  ++   K                     LDV LG A+I+MY +CGS+  AR +F 
Sbjct: 532 NITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFH 591

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVE 323
            ++ ++V+SW+AMI      G+  KA++LF  M +    P +  TF S+L AC+H GLV 
Sbjct: 592 SLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVL 651

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG ++FSSM  ++ V P ++HY C+V LLGRA R  EA  LI  M    D  +W  LLGA
Sbjct: 652 EGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGA 711

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CRIH N+ LAE AA + L+   +NP  Y+LLSNVYA AGRW DVAKIR +M  R ++K P
Sbjct: 712 CRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEP 771

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +WIEV+N IH+F   D +HP++ EIY  L  LS ++E AGY PDT   LHD+ +  + 
Sbjct: 772 GRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQE 831

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
            +L +HSE+LAIA+GLI TP GT IRI KNLR+CGDCH+  K +S +  R II RD+NRF
Sbjct: 832 TSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRF 891

Query: 564 HHFEGGACSCRDYW 577
           H F+ G CSC DYW
Sbjct: 892 HSFKNGKCSCEDYW 905



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 200/443 (45%), Gaps = 64/443 (14%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            D   +++ L +C   R + + +++HAQ+V  G   ++ ++N L+ +Y   +++ DAH +
Sbjct: 25  TDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQV 84

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M  RD +SW+ ++  +++       F+ F E    G   +  T   ++ AC    ++
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-- 232
             G+ IH  ++K+G   D  V  +L+ MY KC  +  ARQ+F  +  RD+V++  M+G  
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 233 ANKFLLDVILG------------------------------------------------- 243
           A K  +   LG                                                 
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDI 264

Query: 244 ---TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
              TA++ M  +CG +DSA++ F  +  ++V+ ++A+IAA   HG   +A + +  M S 
Sbjct: 265 RVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSD 324

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V  NR T++S+L ACS +  +E G  + S + +D     DV+    ++ +  R G L +
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPK 383

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE-MAAKSLLERQPQNPGHYVLLS--NV 417
           A +L  +M  ++D   W A++      +  D  E M     ++ +   PG    L   + 
Sbjct: 384 ARELFYTMP-KRDLISWNAIIAG--YARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSA 440

Query: 418 YANAGRWQDVAKIRDLMTRRRLK 440
            AN+  + D   I + + R  +K
Sbjct: 441 CANSSAYADGKMIHEDILRSGIK 463



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 161/362 (44%), Gaps = 56/362 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   V  G  +++ V   L+ +      +  A   F G+ +RD V ++ ++   ++ 
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQH 308

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +  FE +      G+ L+  T   ++ AC   K +  G+LIH  + + G   D  + 
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+ MYA+C  +  AR+LF  MP RDL++W  +I                         
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 234 ---------------------NKFLLDVILGTAV----------IDMYAKCGSIDSAREI 262
                                 K + + IL + +          ++MY +CGS+  A+ +
Sbjct: 429 PGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNV 488

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+  + ++VISW++MIA +  HG  + A  LF  M +  + P+ ITF S+L  C +   +
Sbjct: 489 FEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEAL 548

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E G ++   + +   ++ DV     ++++  R G L +A  +  S+   +D   W A++G
Sbjct: 549 ELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMIG 606

Query: 383 AC 384
            C
Sbjct: 607 GC 608



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 135/295 (45%), Gaps = 57/295 (19%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + D  T   +++ C  ++ +   + IH  ++++G+  D F+   L++MY KC+ + DA Q
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 215 LFDQMPTRDLVTWTVMI------GANK-------------FLLDVILGTAVIDMYAKCGS 255
           +F +MP RD+++W  +I      G  K             F+ + I   +++        
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 256 IDSAREI----------------------------FDRMRQ-------KNVISWSAMIAA 280
           +++ ++I                              R RQ       ++V+S++ M+  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           Y      K+ L LF  M S  + P+++T+++LL A +   +++EG R+     ++  +  
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEE-GLNS 262

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAE 394
           D++  T +V +  R G +D A +  + ++ ++D  ++ AL+ A   H  NV+  E
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIA-DRDVVVYNALIAALAQHGHNVEAFE 316



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 10/188 (5%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S L  C+N   +   +Q+H +I   G   ++ + N L+ +Y    +L DA  +F+ ++
Sbjct: 535 FASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ 594

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRDRKDIVMG- 177
            RD +SW+ M+GG +   + +   E F +    G +  D  T   ++ AC     ++ G 
Sbjct: 595 HRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGY 654

Query: 178 RLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGAN 234
           ++   +  + G+   I+ + C  LV +  + +   +A  L +QMP   D   W  ++GA 
Sbjct: 655 QIFSSMESEYGVLPTIEHYGC--LVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGAC 712

Query: 235 KFLLDVIL 242
           +   ++ L
Sbjct: 713 RIHGNIAL 720


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/535 (39%), Positives = 310/535 (57%), Gaps = 52/535 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +   +  +  GG   ++ +   L+ +Y+    L  A  +F+ M +RD V+W+ M+ G S+
Sbjct: 134 LEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 193

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI----HD------IVL 185
             D       F + +                   D+ D+  G ++    H+      + L
Sbjct: 194 SEDPYVARRVFDQMV-------------------DQDDVSWGTMMAGYAHNGCFVEVLEL 234

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL----VTWTVMIGANK------ 235
              + +       ++  Y +     +A   F QM   +     VT+  ++ A        
Sbjct: 235 FDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFR 294

Query: 236 -------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                        FL + ++G ++IDMYAKCG +D + ++F+ M  K+ +SW+AM++ Y 
Sbjct: 295 EGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYA 354

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            HG G +A+ LF +M  S+V  + ++FVS+L AC H GLVEEG ++F SM D + ++PD+
Sbjct: 355 VHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDL 414

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY CMVDLLGRAG  DE L  I+ M VE D G+WGALLG+CR+H NV L E+A   L++
Sbjct: 415 EHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVK 474

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            +P+NP H+V+LS++YA +GRW D  K R  M    LKK PG +W+E++NK+H F VGD 
Sbjct: 475 LEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDK 534

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
           +HPQ E ++ +  TL EK+E  GY+PD +  L +V+EE K   LYSHSE+LAI F L+ T
Sbjct: 535 SHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNT 594

Query: 523 PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           P G+ I+I+KNLRVC DCH+  K +S IT R IIVRDA RFHHFE G CSC DYW
Sbjct: 595 PPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 153/355 (43%), Gaps = 53/355 (14%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L SC+++  + Q+HAQI+  G   +  + + L+ +Y+L      A ++F+       + W
Sbjct: 59  LSSCKHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSRILW 117

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + M+  +++   +    E +                                  + +V K
Sbjct: 118 NSMIRAYTRSKQYNEALEMY----------------------------------YCMVEK 143

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
            GL+ D F+ A LVDMY+K   +  AR++FD+MP RD+V W  MI       D  +   V
Sbjct: 144 GGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRV 203

Query: 247 IDM---------------YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
            D                YA  G      E+FD+M+  NV +W+ +IAAY  +G  K+A+
Sbjct: 204 FDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAI 262

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
             F  M      PN +TFVS+L A ++     EG+  F +         +      ++D+
Sbjct: 263 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDM 321

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
             + G+LD + KL   M   KD   W A+L    +H + D A      + E Q Q
Sbjct: 322 YAKCGQLDYSEKLFNEMD-HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 375



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 9/197 (4%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S L +   +   R+    HA I+  G L+N +V N L+ +YA    L  +  LFN M 
Sbjct: 280 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMD 339

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D+VSW+ M+ G++           F       +Q+DS +   V+ ACR    +  GR 
Sbjct: 340 HKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRK 399

Query: 180 I-HDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANK 235
           I H +  K  +  D++ + C  +VD+  +  + D+       MP   D   W  ++G+ +
Sbjct: 400 IFHSMSDKYHIKPDLEHYAC--MVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCR 457

Query: 236 FLLDVILGTAVIDMYAK 252
              +V LG   +D   K
Sbjct: 458 MHSNVKLGEVALDHLVK 474


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/547 (39%), Positives = 306/547 (55%), Gaps = 78/547 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F + + L   ++   + +H      G  +NL + N +L +Y L   + DA  LF  M +R
Sbjct: 15  FVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQR 74

Query: 122 DSVSWSVMVGGFSKVADFINCFETFRE---------------FIRCG---------MQLD 157
           D+V+W++++   +K  D    +  F                 F++CG         M+L+
Sbjct: 75  DAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLE 134

Query: 158 -------SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
                    T+  V+ AC D  D+ +GR++H+   KSG   +  VC  L           
Sbjct: 135 DEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTL----------- 183

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                               IDMY KCG +++AR +F  M ++ 
Sbjct: 184 ------------------------------------IDMYVKCGCLENARRVFYEMEERT 207

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SWSAMIA    HGQ ++AL LF  M+   V PN +TF+ LL+ACSH GL++EG R F+
Sbjct: 208 VVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFA 267

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  D+ V P ++HY C+VDL  RAG L+EA + I SM ++ +  +WGALLG C++HKN+
Sbjct: 268 SMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNI 327

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           DLAE A K L E  P N G+YV++SN+YA A RW+D A++R LM  R +KK  GW+ I V
Sbjct: 328 DLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITV 387

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
              +H+F  GD THPQ+E+I ++   L  K++  GY P T+  L D++E+ K   LY HS
Sbjct: 388 NGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHS 447

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+ FGL+ TPEGT IRIMKNLRVC DCH+ +K +S I  R IIVRD NRFH F  G 
Sbjct: 448 EKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQ 507

Query: 571 CSCRDYW 577
           CSCRD+W
Sbjct: 508 CSCRDFW 514



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 118/237 (49%), Gaps = 18/237 (7%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D++T  FV++AC    D+V G+ IH +  K G   + F+   ++++Y  C  + DA  LF
Sbjct: 9   DTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLF 68

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
           ++MP RD VTW +                VI   AK G ID A   F RM  KNV SW++
Sbjct: 69  EKMPQRDAVTWNI----------------VIAQLAKRGDIDGAYGFFLRMPNKNVRSWTS 112

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MI+ +   G+  +A+DLF  +    V PN +T VS+L AC+  G ++ G R+        
Sbjct: 113 MISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLG-RIVHEYSTKS 171

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             + +V     ++D+  + G L+ A ++   M  E+    W A++    +H   + A
Sbjct: 172 GFKRNVHVCNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEA 227


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 313/556 (56%), Gaps = 55/556 (9%)

Query: 76   IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            + +VH   V  G +++  V +  +++Y    ++ DA  LF+ +  R   +W+ M+GG ++
Sbjct: 543  VNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQ 602

Query: 136  VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                      F +  R G   D+ T   ++ A  D + +   + +H     +GL +D  V
Sbjct: 603  QRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRV 661

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTR--------------------------------- 222
              ALV  Y+KC  +  A+Q+FD M  R                                 
Sbjct: 662  GNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGI 721

Query: 223  --DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
              D  T+  ++ A                      + D+ +G A++ MYAKCGSID AR 
Sbjct: 722  VPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARS 781

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +FD M +++V SW+ MI     HG+G +ALD F  M S    PN  ++V++L ACSH GL
Sbjct: 782  VFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGL 841

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            V+EG R F SM  D+ + P ++HYTCMVDLLGRAG L+EA   I +M +E D+  WGALL
Sbjct: 842  VDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALL 901

Query: 382  GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            GAC  + N+++AE AAK  L+ +P++   YVLLSN+YA  G+W+    +R +M R+ ++K
Sbjct: 902  GACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRK 961

Query: 442  IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             PG +WIEV+N+IH F VGD++HP+S+EIY  L  L E+L+  GY+PDT   L + D+E 
Sbjct: 962  EPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEH 1021

Query: 502  KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
            K   L SHSEKLAI +GL+ T     IR+ KNLRVC DCH+  K +S IT R I+ RDA 
Sbjct: 1022 KEQALCSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAK 1081

Query: 562  RFHHFEGGACSCRDYW 577
            RFHHF+ G CSC DYW
Sbjct: 1082 RFHHFKDGVCSCGDYW 1097



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 187/390 (47%), Gaps = 69/390 (17%)

Query: 57  SVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           ++D   +++ L  C    +I   +QVH  I+  G   NL VANKLL +Y     L  A  
Sbjct: 115 AIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQ 174

Query: 114 LFNGMKERDSVSWSVMVGGFSKVA---DFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           +F+ + +++   W+ M+GG+++     D +  ++  R+   CG Q +  T   +++AC  
Sbjct: 175 VFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQ--ECG-QPNEITYLSILKACCC 231

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             ++  G+ IH  +++SG   D  V  ALV+MY KC  I+DA+ +FD+M  R++++WTVM
Sbjct: 232 PVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVM 291

Query: 231 IGA------------------------NKFLLDVIL------------------------ 242
           IG                         N +    IL                        
Sbjct: 292 IGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGL 351

Query: 243 ------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                 G A++ MYAK GSID AR +FD M ++++ SW+ MI     HG+G++A  LF  
Sbjct: 352 ALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 411

Query: 297 MLSSRVLPNRITFVSLLYA---CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           M  +  LPN  T++S+L A    S + L  E +++     ++     D++    ++ +  
Sbjct: 412 MQRNGCLPNLTTYLSILNASAIASTSAL--EWVKVVHKHAEEAGFISDLRIGNALIHMYA 469

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           + G +D+A  + + M  ++D   W A++G 
Sbjct: 470 KCGSIDDARLVFDGM-CDRDVISWNAMMGG 498



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 198/448 (44%), Gaps = 56/448 (12%)

Query: 29  ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGT 88
            L  HG  Q   +  + MQ         +       S++ S   +  ++ VH      G 
Sbjct: 395 GLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGF 454

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           +++L + N L+++YA   ++ DA  +F+GM +RD +SW+ M+GG ++       F  F +
Sbjct: 455 ISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQ 514

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
             + G+  DS T   ++        +     +H   +++GL  D  V +A + MY +C  
Sbjct: 515 MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGS 574

Query: 209 IDDARQLFDQMPTRDLVTWTVMIG--------------------------ANKFL----- 237
           IDDAR LFD++  R + TW  MIG                          A  F+     
Sbjct: 575 IDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634

Query: 238 ----------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                 +D+ +G A++  Y+KCG++  A+++FD M ++NV +W+
Sbjct: 635 NVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWT 694

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MI     HG G  A   F  ML   ++P+  T+VS+L AC+ TG + E ++   +    
Sbjct: 695 MMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGAL-EWVKEVHNHAVS 753

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAE 394
             +  D++    +V +  + G +D+A  + + M VE+D   W  ++G    H + ++  +
Sbjct: 754 AGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALD 812

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAG 422
              K   E    N   YV +    ++AG
Sbjct: 813 FFVKMKSEGFKPNGYSYVAVLTACSHAG 840



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 146/292 (50%), Gaps = 56/292 (19%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           ++ G+ +DS++   +++ C  ++DI++ + +H  ++KSG++ + +V   L+ +Y +C  +
Sbjct: 110 VQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRL 169

Query: 210 DDARQLFDQMPTRDL-----------------------------------VTWTVMIGA- 233
             ARQ+FD++  +++                                   +T+  ++ A 
Sbjct: 170 QCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKAC 229

Query: 234 ------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                             + F  DV + TA+++MY KCGSI+ A+ IFD+M ++NVISW+
Sbjct: 230 CCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWT 289

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MI    ++G+G++A  LF  M     +PN  T+VS+L A +  G + E ++   S   +
Sbjct: 290 VMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL-EWVKEVHSHAVN 348

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             +  D++    +V +  ++G +D+A  + + M+ E+D   W  ++G    H
Sbjct: 349 AGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQH 399



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 13/184 (7%)

Query: 59  DPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   ++S L +C +   +  +++VH   V+ G +++L V N L+++YA   ++ DA ++F
Sbjct: 724 DATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVF 783

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M ERD  SW+VM+GG ++    +   + F +    G + + Y+   V+ AC     + 
Sbjct: 784 DDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVD 843

Query: 176 MGR-----LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
            GR     +  D  ++  +  + + C  +VD+  +  ++++A      MP   D   W  
Sbjct: 844 EGRRQFLSMTQDYGIEPTM--EHYTC--MVDLLGRAGLLEEAELFILNMPIEPDDAPWGA 899

Query: 230 MIGA 233
           ++GA
Sbjct: 900 LLGA 903


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/577 (38%), Positives = 336/577 (58%), Gaps = 59/577 (10%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    +S L +C   R +   R+VHA  +  G    + V+  +L  Y    A+  A A+F
Sbjct: 118 DSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVF 177

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  R+SVSW+ M+ G++   +       F   ++ G+ +   ++   ++AC +   + 
Sbjct: 178 DCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLD 237

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID------------------------- 210
             R +H+++++ GL  +  V  AL+  YAKCK  D                         
Sbjct: 238 EVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGF 297

Query: 211 -------DARQLFDQMPTR----DLVTWTVMIGA-------------------NKFLLDV 240
                  DA +LF +M       D  T   +I A                   ++   DV
Sbjct: 298 TQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDV 357

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + TA+IDMY+KCG +  AR +FD  R ++VI+W+AMI  YG HG G+ A++LF  M  +
Sbjct: 358 YVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGT 417

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
             LPN  TF+S+L ACSH GLV+EG + F+SM  D+ + P ++HY  MVDLLGRAG+LDE
Sbjct: 418 GSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDE 477

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A   I++M +E    ++GA+LGAC++HKNV+LAE +A+ + E  P+   ++VLL+N+YAN
Sbjct: 478 AWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYAN 537

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           A  W+DVA++R  M ++ L+K PGW+ I+++N++H F  G + H  +++IY  L  L E+
Sbjct: 538 ASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEE 597

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT+  +HDV+++VK   L +HSEKLAIA+GLI T  GT I+I KNLRVC DC
Sbjct: 598 IKDMGYVPDTD-SIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDC 656

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+  K +S +T R II+RD  RFHHF+ G CSC DYW
Sbjct: 657 HNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 154/353 (43%), Gaps = 68/353 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VHAQ+ A G  +  I +  L  +Y   +   DA  +F+ M  RD V+W+ +V G+++ 
Sbjct: 36  RAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARN 95

Query: 137 ADFINCFETF--REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               +  E     +    G + DS TL  V+ AC D + +   R +H   L++GLD    
Sbjct: 96  GLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVN 155

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
           V  A++D Y KC  ++ AR +FD MP R+ V+W  MI                       
Sbjct: 156 VSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEG 215

Query: 234 ---------------------------NKFLLDVILGTAV------IDMYAKCGSIDSAR 260
                                      ++ L+ V L + V      I  YAKC   D A 
Sbjct: 216 VDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAA 275

Query: 261 EIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           ++F+ +  +K  ISW+AMI  +  +   + A  LF  M    V P+  T VS++ A +  
Sbjct: 276 QVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVAD- 334

Query: 320 GLVEEGLRLFSSMW-DDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIES 367
             + + L+   + W   +++R     DV   T ++D+  + GR+  A +L +S
Sbjct: 335 --ISDPLQ---ARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDS 382



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 131/335 (39%), Gaps = 67/335 (20%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +++ C  R D+  GR +H  +   GL  +     AL +MY KC+   DAR++FD+M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 220 PTRDLVTWT-VMIGANKFLLDVILGTAVIDMYAKCG--------------------SIDS 258
           P+RD V W  V+ G  +  L      AV+ M  + G                    ++ +
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 259 AREI-----------------------------------FDRMRQKNVISWSAMIAAYGY 283
            RE+                                   FD M  +N +SW+AMI  Y  
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           +G   +A+ LF  M+   V     + ++ L AC   G ++E +R    +     +  +V 
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDE-VRRVHELLVRVGLSSNVS 256

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL-LGACRIHKNVDLAEMAAKSLLE 402
               ++    +  R D A ++   +  +K    W A+ LG  +     D   + A+  LE
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLE 316

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
                P  + L+S + A       VA I D +  R
Sbjct: 317 N--VRPDSFTLVSVIPA-------VADISDPLQAR 342


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 320/561 (57%), Gaps = 56/561 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N+    +VHA  +  G  +N+ + N L+ +Y     +    + F  M E+D +SW+ ++ 
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           G+++    ++     R+     M +D   +  ++ AC   K   + + IH  VLK GL  
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-A 485

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR----------------------------- 222
           D  +  A+V++Y +  ++D AR +F+ + ++                             
Sbjct: 486 DILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLI 545

Query: 223 ------DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSID 257
                 DL+T   ++ A                     F L+ ++  +++DMYA+CG+++
Sbjct: 546 ETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTME 605

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           +AR IF+ ++Q+++I W++MI A G HG GK A+DLF  M    VLP+ ITF++LLYACS
Sbjct: 606 NARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACS 665

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H+GLV EG + F  M +++ + P  +HY C+VDLL R+  L+EA   + +M +E    +W
Sbjct: 666 HSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVW 725

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            ALLGACRIH N DL E+AAK LL+   +N G+YVL+SN +A  GRW DV ++R +M   
Sbjct: 726 CALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGN 785

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHD 496
           +LKK PG +WIEVENKIH F   D +HPQ   IY  L   ++ L E  GY   T    HD
Sbjct: 786 KLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHD 845

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V EE K   LY HSE+LA+ +GL+ T +GT +RI KNLR+C DCH+F K  S I++R ++
Sbjct: 846 VCEEEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLV 905

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA+RFHHFE G CSC D+W
Sbjct: 906 VRDASRFHHFERGLCSCGDFW 926



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 193/422 (45%), Gaps = 77/422 (18%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+S+L +C     I   R +HA I+     T++ V+N L+ +YA    + DA  +F  M 
Sbjct: 254 FVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML 313

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D VSW+ ++ G  +   + +    F++    G + D  ++  +I A     +++ G  
Sbjct: 314 FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGME 373

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKF 236
           +H   +K G+D +  +  +L+DMY KC  +      F+ MP +DL++WT +I     N+ 
Sbjct: 374 VHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNEC 433

Query: 237 LLD--------------------------------------------------VILGTAV 246
            LD                                                  +++  A+
Sbjct: 434 HLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAI 493

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +++Y +   +D AR +F+ +  K+++SW++MI    ++G   +AL+LF  ++ + + P+ 
Sbjct: 494 VNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDL 553

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEAL 362
           IT VS+LYA +    +++G  +       F +R     +      +VD+  R G ++ A 
Sbjct: 554 ITLVSVLYAAAALSSLKKGKEIHG-----FLIRKGFFLEGLIANSLVDMYARCGTMENAR 608

Query: 363 KLIESMSVEKDEGLWGALLGACRIH----KNVDL-AEMAAKSLLERQPQNPGHYVLLSNV 417
            +   +  ++D  LW +++ A  +H      +DL ++M  +++L      P H   L+ +
Sbjct: 609 NIFNYVK-QRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVL------PDHITFLALL 661

Query: 418 YA 419
           YA
Sbjct: 662 YA 663



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 179/425 (42%), Gaps = 63/425 (14%)

Query: 57  SVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S+D   F   L +C    + R   ++H   V  G    + V N L+ +YA    L  A  
Sbjct: 145 SLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARV 204

Query: 114 LFNG--MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           LF+   M++ D VSW+ ++       + +     FR     G++ ++YT    ++AC   
Sbjct: 205 LFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGP 264

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             I +GR IH ++LKS    D +V  AL+ MYA C  ++DA ++F  M  +D V+W  ++
Sbjct: 265 TFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLL 324

Query: 232 GA-----------NKF--------------LLDVI------------------------- 241
                        N F              +L++I                         
Sbjct: 325 SGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGID 384

Query: 242 ----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
               +G ++IDMY KC  +      F+ M +K++ISW+ +IA Y  +     AL+L   +
Sbjct: 385 SNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKV 444

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
              ++  + +   S+L ACS  GL  E L      +       D+     +V++ G    
Sbjct: 445 QLEKMDVDPMMIGSILLACS--GLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELAL 502

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           +D A  + ES++  KD   W +++  C +H  + +  +   + L      P    L+S +
Sbjct: 503 VDYARHVFESIN-SKDIVSWTSMITCC-VHNGLAIEALELFNSLIETNIEPDLITLVSVL 560

Query: 418 YANAG 422
           YA A 
Sbjct: 561 YAAAA 565



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 132/312 (42%), Gaps = 52/312 (16%)

Query: 75  QIRQVHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           Q +Q+HA  +     L ++ +  K +++Y    +  DA  +F+ M ER   +W+ M+G  
Sbjct: 64  QGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGAC 123

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                ++   E ++E    G+ LD++T P V++AC   K+  +G  IH + +K G     
Sbjct: 124 VSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFV 183

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQ--MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           FVC AL+ MYAKC  +  AR LFD   M   D V+W  +I                    
Sbjct: 184 FVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSII-------------------- 223

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
                                      +A+   G+  +AL LF  M    V  N  TFVS
Sbjct: 224 ---------------------------SAHVGEGESLEALSLFRRMQEVGVESNTYTFVS 256

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
            L AC     ++ G  + + +        DV     ++ +    G++++A ++ +SM + 
Sbjct: 257 ALQACEGPTFIKIGRGIHAVILKSNHF-TDVYVSNALIAMYANCGQMEDAERVFKSM-LF 314

Query: 372 KDEGLWGALLGA 383
           KD   W  LL  
Sbjct: 315 KDCVSWNTLLSG 326


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/575 (38%), Positives = 318/575 (55%), Gaps = 56/575 (9%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F  +L +C  +  +     V  +  A G   ++ V + LL++Y+   A+ DA  +F
Sbjct: 110 DSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVF 169

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           +GM  +D V+WS MV GF      +     +      G+  D   +  VI+AC    +  
Sbjct: 170 DGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTR 229

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           MG  +H   L+ G+ +D  +  +LVDMYAK    D ARQ+F  MP R+ V+W  +I    
Sbjct: 230 MGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFA 289

Query: 234 ----------------------------------------------NKFLL-----DVIL 242
                                                         + F+L       IL
Sbjct: 290 QNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCIL 349

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTAV+DMY+KCGS++SAR++F+++  ++++ W+AMIA  G HG G  AL LF  +  + +
Sbjct: 350 GTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGI 409

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  TF SLL A SH+GLVEEG   F  M  +F + P  KH  C+VDLL R+G ++EA 
Sbjct: 410 KPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEAN 469

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           +++ SM  E    +W ALL  C  +K ++L E  AK +LE QP++ G   L+SN+YA A 
Sbjct: 470 EMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAK 529

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W  V +IR LM     KK+PG++ IEV    H F + D +HPQ +EI +M+  LS ++ 
Sbjct: 530 KWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMR 589

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY+P T F  HD+DE+VK   L  HSE+LAIAFGL+ T  GT + I+KNLRVCGDCH 
Sbjct: 590 KMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHD 649

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK++S I  R I+VRDA RFHHF+ GACSC DYW
Sbjct: 650 AIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/508 (41%), Positives = 292/508 (57%), Gaps = 51/508 (10%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C +I++  QV +++       N++    LL +Y     LT A  +F+ M  R+ VSW++M
Sbjct: 434 CGSIYEAEQVFSKM----ENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLM 489

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + G+++  D    FE        G Q D  T+  ++ AC     +  G+L+H   +K GL
Sbjct: 490 IAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGL 549

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249
           + D                                                ++ T++I M
Sbjct: 550 ESD-----------------------------------------------TVVATSLIGM 562

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCG +  AR +FD++  ++ ++W+AM+A YG HG G +A+DLF  ML  RV PN ITF
Sbjct: 563 YSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITF 622

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            +++ AC   GLV+EG  +F  M +DF ++P  +HY CMVDLLGRAGRL EA + I+ M 
Sbjct: 623 TAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMP 682

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
            E D  +W ALLGAC+ H NV LAE AA  +L  +P N   YV LSN+YA AGRW D  K
Sbjct: 683 CEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTK 742

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R +M  + LKK  G + IE++ +IH F   D  HP+ + I+  L  L+++++ AGY PD
Sbjct: 743 VRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPD 802

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
             F LHDVDE  K   L  HSEKLAIA+GL+ TP GT IRIMKNLRVCGDCH+  K +S 
Sbjct: 803 MRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVCGDCHTATKFISK 862

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I +R I+ RDANRFH+F+ G CSC D+W
Sbjct: 863 IRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 188/423 (44%), Gaps = 67/423 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH Q+   G   ++ + N L+  Y+    +     +F  M  RD V+WS M+  ++  
Sbjct: 98  KMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGN 157

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                 F+TF       ++ +  T   +++AC +   +   R IH +V  SG++ D  V 
Sbjct: 158 NHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVA 217

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN--------------KFLLDVIL 242
            AL+ MY+KC  I  A ++F +M  R++V+WT +I AN              K L   I 
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS 277

Query: 243 GTAV--IDMYAKCGS--------------------------------------IDSAREI 262
             AV  + +   C +                                      I  ARE 
Sbjct: 278 PNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARET 337

Query: 263 FDRMRQKNVISWSAMIAAYGYHG-QGKKALD----LFPMMLSSRVLPNRITFVSLLYACS 317
           FDRM +++VISWSAMIA Y   G Q K++LD    L   M    V PN++TF+S+L ACS
Sbjct: 338 FDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACS 397

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G +E+G ++ + +        D    T + ++  + G + EA ++   M   K+   W
Sbjct: 398 VHGALEQGRQIHAEI-SKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAW 455

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            +LL      K  DL   A K   E   +N   + L+   YA +G   D+AK+ +L++  
Sbjct: 456 ASLL--TMYIKCGDLTS-AEKVFSEMSTRNVVSWNLMIAGYAQSG---DIAKVFELLSSM 509

Query: 438 RLK 440
           +++
Sbjct: 510 KVE 512



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 113/265 (42%), Gaps = 50/265 (18%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+ ++S T   +I  C   +    G+++H  + + GL ID ++  +L++ Y+K   +   
Sbjct: 73  GLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASV 132

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
            Q+F +M  RD+VTW+ MI A                                       
Sbjct: 133 EQVFRRMTLRDVVTWSSMIAA--------------------------------------- 153

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
                   Y  +    KA D F  M  + + PNRITF+S+L AC++  ++E+  R   ++
Sbjct: 154 --------YAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKA-REIHTV 204

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
                +  DV   T ++ +  + G +  A ++ + M  E++   W A++ A   H+ ++ 
Sbjct: 205 VKASGMETDVAVATALITMYSKCGEISLACEIFQKMK-ERNVVSWTAIIQANAQHRKLNE 263

Query: 393 A-EMAAKSLLERQPQNPGHYVLLSN 416
           A E+  K L      N   +V L N
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLN 288


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 320/575 (55%), Gaps = 58/575 (10%)

Query: 61   KFFISSLLSCR----NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
            +F ++SL+S      +++    +HA +   G   +  V N L+ +Y    ++ D   +F 
Sbjct: 431  QFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE 490

Query: 117  GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
                RD +SW+ ++ GF            F + +  G   + YT   ++R+C    D+ +
Sbjct: 491  ATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 550

Query: 177  GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
            G+ +H  ++K+ LD + FV  ALVDMYAK + ++DA  +F+++  RDL  WTV++     
Sbjct: 551  GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 610

Query: 234  ---------------------NKFLL------------------------------DVIL 242
                                 N+F L                              D+ +
Sbjct: 611  DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 670

Query: 243  GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             +A++DMYAKCG ++ A  +FD +  ++ +SW+ +I  Y  HGQG KAL  F  ML    
Sbjct: 671  ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 730

Query: 303  LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            +P+ +TF+ +L ACSH GL+EEG + F+S+   + + P ++HY CMVD+LGRAG+  E  
Sbjct: 731  VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 790

Query: 363  KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
              IE M +  +  +W  +LGAC++H N++  E AA  L E +P+   +Y+LLSN++A  G
Sbjct: 791  SFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKG 850

Query: 423  RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
             W DV  +R LM+ R +KK PG +W+EV  ++H F   D +HP+  EI+  L  L +KL 
Sbjct: 851  MWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLM 910

Query: 483  LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
              GY P+T+  LH+V +  K   L+ HSE+LA+AF L++T     IRI KNLR+CGDCH 
Sbjct: 911  SVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHD 970

Query: 543  FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            F+K +S IT + ++VRD N FHHF+ G+CSC+++W
Sbjct: 971  FMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 180/397 (45%), Gaps = 61/397 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVHA+ +  G  ++L V + L+ +YA    +  A  +F  M ++++VSW+ ++ GF+++
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D       F       +    +TL  V++ C +  ++  G+++H + ++ G ++D+F+ 
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
             LVDMY+KC +  DA ++F ++   D+V+W+ +I                         
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVI 428

Query: 234 -NKFLL------------------------------DVILGTAVIDMYAKCGSIDSAREI 262
            N+F L                              D  +  A++ MY K GS+     +
Sbjct: 429 PNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRV 488

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+    +++ISW+A+++ +  +      L +F  ML+    PN  TF+S+L +CS    V
Sbjct: 489 FEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 548

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           + G ++ + +  +     D    T +VD+  +   L++A  +   + +++D   W  ++ 
Sbjct: 549 DLGKQVHAQIVKNSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVA 606

Query: 383 ACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNV 417
               +      E A K    ++R+   P  + L S++
Sbjct: 607 G---YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSL 640



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 168/393 (42%), Gaps = 57/393 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H Q++  G   +  + N L+ +YA   +   A  +F  + ERD VSW+ ++ GF   
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 207

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    F E  R G++ + +T    ++AC    D+  G+ +H   +K G   D FV 
Sbjct: 208 GYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVG 267

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
           +ALVD+YAKC  +  A ++F  MP ++ V+W  ++                         
Sbjct: 268 SALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEIN 327

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            +KF L  +L                                 ++DMY+KCG    A ++
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F R+   +V+SWSA+I      GQ ++A ++F  M  S V+PN+ T  SL+ A +  G +
Sbjct: 388 FVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDL 447

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
             G  + + +   +    D      +V +  + G + +  ++ E+ +  +D   W ALL 
Sbjct: 448 YYGESIHACVC-KYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEA-TTNRDLISWNALLS 505

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
               ++  D        +L  +  NP  Y  +S
Sbjct: 506 GFHDNETCDTGLRIFNQMLA-EGFNPNMYTFIS 537



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 172/401 (42%), Gaps = 60/401 (14%)

Query: 61  KFFISSLL-SCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           KF +S++L  C N   +R    VH+  +  G   +  ++  L+ +Y+      DA  +F 
Sbjct: 330 KFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFV 389

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +++ D VSWS ++    +        E F+     G+  + +TL  ++ A  D  D+  
Sbjct: 390 RIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYY 449

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---- 232
           G  IH  V K G + D  VC ALV MY K   + D  ++F+    RDL++W  ++     
Sbjct: 450 GESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHD 509

Query: 233 ---------------ANKF----------------LLDVILG------------------ 243
                          A  F                L DV LG                  
Sbjct: 510 NETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 569

Query: 244 -TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            TA++DMYAK   ++ A  IF+R+ ++++ +W+ ++A Y   GQG+KA+  F  M    V
Sbjct: 570 GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV 629

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN  T  S L  CS    ++ G R   SM        D+   + +VD+  + G +++A 
Sbjct: 630 KPNEFTLASSLSGCSRIATLDSG-RQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
            + + + V +D   W  ++     H     A  A +++L+ 
Sbjct: 689 VVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDE 728



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 128/272 (47%), Gaps = 56/272 (20%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++R C  + D+  G+ IH  V+KSG++ D  +  +LV++YAKC   + A ++F ++P RD
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 224 LVTWTVMIG------------------------ANKF----------------------- 236
           +V+WT +I                         AN+F                       
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 237 -------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    D+ +G+A++D+YAKCG +  A  +F  M ++N +SW+A++  +   G  +K
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
            L+LF  M  S +  ++ T  ++L  C+++G +  G ++  S+        D     C+V
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFISCCLV 372

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           D+  + G   +ALK+   +  + D   W A++
Sbjct: 373 DMYSKCGLAGDALKVFVRIE-DPDVVSWSAII 403


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 340/627 (54%), Gaps = 97/627 (15%)

Query: 45  PMQMGPDCQFTRSVDPK----FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100
           P+   P+     +V P+      I  L +  + F++RQVHAQI+      +++   ++  
Sbjct: 9   PIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGL 68

Query: 101 IYALHKALTDAHALFNGMKER--DSVSWSVMVGGFSK---VADFINCFETFREFIRCGMQ 155
           + A   +   A  +F  ++++  ++  W+  +   ++     D I  F   R++  C   
Sbjct: 69  VCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCP-- 126

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR-- 213
            D++T   V+RAC +  D+  GR++H +V K G   + ++   +V +YA C  + +AR  
Sbjct: 127 -DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 214 -----------------------------QLFDQMPTRDLVTWTVM-------------- 230
                                         LF +MP R++ +WT M              
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245

Query: 231 ---------------------------IGA-------------NKFLLDVILGTAVIDMY 250
                                      +GA             + F  +V +   +IDMY
Sbjct: 246 HLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMY 305

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            KCG ++ A ++F+ M ++ V+SWSAMI     HG+ ++AL LF  M    + PN +TF+
Sbjct: 306 VKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFI 365

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            LL+ACSH GL+ EG R F+SM  D+ + P ++HY CMVDLL RAG L EA + I +M +
Sbjct: 366 GLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM 425

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           + +  +WGALLGACR+HKNV++AE A K LLE  P N G+YV+LSN+YA AGRW+D A++
Sbjct: 426 KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARV 485

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M  R++KK PGW+ I V+  +H+F  G+ +HP +E+I++    L E++ L GY+P+T
Sbjct: 486 RKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNT 545

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +  L D++E  KV  +  HSEKLA+ FGL+ TP  T IRIMKNLR+C DCHS  K +SAI
Sbjct: 546 SVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHSAFKLISAI 605

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             R I+VRD NRFH F   +CSCRDYW
Sbjct: 606 VNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/553 (39%), Positives = 314/553 (56%), Gaps = 55/553 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H QI+  G  +++ V N L+ +YA    +  A  +F+G+  R  VSW+ ++ G+++   
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGK 235

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
            +     F +    G++ D   L  ++RA  D  D+  GR IH  V+K GL+ +  +  +
Sbjct: 236 AVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLIS 295

Query: 199 LVDMYAKCKVIDDARQLFDQMPT------------------------------------- 221
           L   YAKC ++  A+  FDQM T                                     
Sbjct: 296 LTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPD 355

Query: 222 ----RDLVTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
               R  V  +  +G+             + +  D+ + T++IDMYAKCGS++ AR +FD
Sbjct: 356 SVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFD 415

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           R   K+V+ WSAMI  YG HGQG +A++L+ +M  + V PN +TF+ LL AC+H+GLV+E
Sbjct: 416 RNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKE 475

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G  LF  M  DF + P  +HY+C+VDLLGRAG L EA   I  + +E    +WGALL AC
Sbjct: 476 GWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSAC 534

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           +I++ V L E AA  L    P N GHYV LSN+YA++  W  VA +R LM  + L K  G
Sbjct: 535 KIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLG 594

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           ++ IE+  K+  F VGD +HP ++EI+  L  L  +L+  G++P T   LHD++ E K  
Sbjct: 595 YSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEE 654

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
           NL  HSE++A+A+GLI+T  GT +RI KNLR C +CHS IK +S +  R IIVRDANRFH
Sbjct: 655 NLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFH 714

Query: 565 HFEGGACSCRDYW 577
           HF+ G CSC DYW
Sbjct: 715 HFKDGLCSCGDYW 727



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 166/384 (43%), Gaps = 64/384 (16%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F+ S + +  +   + Q+H ++V  G   N  +  KL+   +    +  A  LF+     
Sbjct: 58  FYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYP 117

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D   W+ ++  +S+   + +  E +R     G+  D +T P+V++AC +  D  +  +IH
Sbjct: 118 DVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
             ++K G   D FV   LV +YAKC  I  A+ +FD +  R +V+WT +I          
Sbjct: 178 GQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAV 237

Query: 234 -----------NKFLLDVILGTAVIDMYAKCGSIDSAREI-------------------- 262
                      N    D I   +++  Y     ++  R I                    
Sbjct: 238 EALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLT 297

Query: 263 ---------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
                          FD+M+  NVI W+AMI+ Y  +G  ++A++LF  M+S  + P+ +
Sbjct: 298 AFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSV 357

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALK 363
           T  S + A +  G +E      +   DD+  +     D+   T ++D+  + G ++ A +
Sbjct: 358 TVRSAVLASAQVGSLE-----LAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARR 412

Query: 364 LIESMSVEKDEGLWGALLGACRIH 387
           + +  S +KD  +W A++    +H
Sbjct: 413 VFDRNS-DKDVVMWSAMIMGYGLH 435


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 337/614 (54%), Gaps = 98/614 (15%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI------YALHKALT 109
           R  +PK  +  L  C N   ++ +HA ++      ++  A++L+          LH A+ 
Sbjct: 15  RLKNPKLVL--LECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIR 72

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  + N     +   ++ ++ G S   +  N F  + + +R G+  D+ T PF+++AC 
Sbjct: 73  VASQIQNP----NLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACA 128

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA------------------------- 204
             ++  MG   H   +K G + D +V  +LV MYA                         
Sbjct: 129 QLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTC 188

Query: 205 ------KCKVIDDARQLFDQMPTRDLVTW------------------------------- 227
                 +C     AR+LFD+MP R+LVTW                               
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVAN 248

Query: 228 -TVMIGA----------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
            TVM+G                       NK  L++ILGTAV+DMYA+CG+++ A  +F+
Sbjct: 249 ETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFE 308

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           ++ +K+V+ W+A+IA    HG  +KAL  F  M     +P  ITF ++L ACSH G+VE 
Sbjct: 309 QLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVER 368

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           GL +F SM  D  V P ++HY CMVDLLGRAG+L +A K +  M V+ +  +W ALLGAC
Sbjct: 369 GLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGAC 428

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           RIHKNV++ E   K LLE QP+  GHYVLLSN+YA A +W+DV  +R +M  + ++K PG
Sbjct: 429 RIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPG 488

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLV-TLSEKLELAGYIPDTNFELHDVDEEVKV 503
           ++ IE++ K+H+F++GD THP+ E+I R+    +  K++LAGY+ +T   + D+DEE K 
Sbjct: 489 YSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKE 548

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
           G L+ HSEKLAIA+G++     T IRI+KNLRVC DCH+  K +S +    +IVRD NRF
Sbjct: 549 GALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRF 608

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 609 HHFKEGTCSCMDYW 622


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/514 (40%), Positives = 307/514 (59%), Gaps = 52/514 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I+  +  + I + R++  Q+ +  T +     N ++  YA    +  A  LF+ M +RD 
Sbjct: 315 IAGYVQSQQIEKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SW+ M+ G+++          F +  R G  L+   L   + +C +   + +G+ +H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++K+G                                               F    I G
Sbjct: 431 LVKAG-----------------------------------------------FQTGYIAG 443

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A++ MY KCGSI+ A ++F+ + +K+++SW+ MIA Y  HG GK+AL LF  M  + + 
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IK 502

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ +T V +L ACSHTGLV++G+  F+SM+ ++ +  + KHYTCM+DLLGRAGRLDEAL 
Sbjct: 503 PDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           L++SM    D   WGALLGA RIH + +L E AA+ + E +P N G YVLLSN+YA +GR
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGR 622

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W++V ++R  M  + +KK+PG++W+E++NK H F+VGD +HP++E IY  L  L  +L+ 
Sbjct: 623 WREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKK 682

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            G++  T   LHDV+EE K   L  HSEKLA+AFG+++ P G  IR++KNLRVC DCH+ 
Sbjct: 683 DGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNA 742

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IKH+S IT+R IIVRD+NRFHHF  G+CSC DYW
Sbjct: 743 IKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 36/321 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF-ETFREF 149
           +LI  N +L  Y  +  L+ A ALFN M E+D VSW+ M+ GF++     N F E  R+ 
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ-----NGFVEEARKI 175

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
               +  +  +   ++ A      I   R + D    S +D +      L+  Y + K +
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWNCLMGGYVRKKRL 231

Query: 210 DDARQLFDQMPTRDLVTWTVMIG--ANKFLL-------------DVILGTAVIDMYAKCG 254
           DDAR LFD+MP RD ++W +MI   A   LL             DV   TA++  + + G
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +D A  IF+ M +KN +SW+AMIA Y    Q +KA +LF  M S     N  ++ +++ 
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTMVT 347

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
             +  G +++   LF  M      + D   +  M+    ++G+ +EAL L   + +++D 
Sbjct: 348 GYAQCGNIDQAKILFDEM-----PQRDCISWAAMISGYAQSGQSEEALHLF--IKMKRDG 400

Query: 375 GLWGALLGACRIHKNVDLAEM 395
           G+      AC +    ++A +
Sbjct: 401 GILNRSALACALSSCAEIAAL 421



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 158/376 (42%), Gaps = 93/376 (24%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           ++++  N+ +  Y        A ++FNGM+ R +V+++ M+ G+       N F+  R+ 
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSN----NKFDCARK- 112

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
                         V     DR       LI   V+ SG              Y K   +
Sbjct: 113 --------------VFEKMPDRD------LISWNVMLSG--------------YVKNGNL 138

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
             AR LF+QMP +D+V+W  M+                  +A+ G ++ AR+IFD+M  K
Sbjct: 139 SAARALFNQMPEKDVVSWNAMLSG----------------FAQNGFVEEARKIFDQMLVK 182

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP------------------------- 304
           N ISW+ +++AY  +G+ + A  LF   +   ++                          
Sbjct: 183 NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242

Query: 305 --NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             ++I++  ++   +  GL+ E  RLF    ++  +R DV  +T MV    + G LDEA 
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLF----EELPIR-DVFAWTAMVSGFVQNGMLDEAT 297

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANA 421
           ++ E M  EK+E  W A++      + ++     A+ L ++ P +N   +  +   YA  
Sbjct: 298 RIFEEMP-EKNEVSWNAMIAGYVQSQQIE----KARELFDQMPSRNTSSWNTMVTGYAQC 352

Query: 422 GRWQDVAKIRDLMTRR 437
           G       + D M +R
Sbjct: 353 GNIDQAKILFDEMPQR 368



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%), Gaps = 49/301 (16%)

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
           +  Y +    + A  +F+ M  R  VT+  MI                  Y      D A
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISG----------------YLSNNKFDCA 110

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           R++F++M  +++ISW+ M++ Y  +G    A  LF  M    V    +++ ++L   +  
Sbjct: 111 RKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQN 166

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           G VEE  ++F    D   V+ ++  +  ++    + GR+++A +L +S  ++ +   W  
Sbjct: 167 GFVEEARKIF----DQMLVKNEIS-WNGLLSAYVQNGRIEDARRLFDS-KMDWEIVSWNC 220

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           L+G     K +D     A+SL +R P ++   + ++   YA  G    +++ R L     
Sbjct: 221 LMGGYVRKKRLD----DARSLFDRMPVRDKISWNIMITGYAQNGL---LSEARRLFEELP 273

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE------LAGYIPDTNF 492
           ++ +  WT             G   +   +E  R+   + EK E      +AGY+     
Sbjct: 274 IRDVFAWT---------AMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 324

Query: 493 E 493
           E
Sbjct: 325 E 325


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/487 (43%), Positives = 299/487 (61%), Gaps = 48/487 (9%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           ++V N+++  + L+  +  A  +F GMKERD+ +WS M+  + +    +     FR   R
Sbjct: 272 VVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQR 331

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
            G+ L+  +L  V+  C     +  G+ +H               A LV           
Sbjct: 332 EGLALNFPSLISVLSVCVSLASLDHGKQVH---------------AQLV----------- 365

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
            R  FDQ                    D+ + + +I MY KCG++  A+++F+R   K+V
Sbjct: 366 -RSEFDQ--------------------DLYVASVLITMYVKCGNLVRAKQVFNRFPLKDV 404

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           + W++MI  Y  HG G++AL++F  M SS V P+ +TF+ +L ACS++G V+EGL LF +
Sbjct: 405 VMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFET 464

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   + V P ++HY C+VDLLGRA +++EA+KL+E M +E D  +WGALLGACR H  +D
Sbjct: 465 MKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLD 524

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE+A + L + +P+N G YVLLSN+YA  GRW+DV  +R+ +  R + K+PG +WIEVE
Sbjct: 525 LAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVE 584

Query: 452 NKIHQFSVGDST-HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            K+H F+ GDS  HP+   I +ML  L   L  AGY PD +F LHDVDEE K  +L  HS
Sbjct: 585 KKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFVLHDVDEEEKTHSLGYHS 644

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+A+GL+  PEG  IR+MKNLRVCGDCHS IK ++ +T R II+RDANRFHHF+ G 
Sbjct: 645 EKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGH 704

Query: 571 CSCRDYW 577
           CSC+DYW
Sbjct: 705 CSCKDYW 711



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 128/281 (45%), Gaps = 33/281 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N +  N L+  +  +  L++A  +F+ M +R+ VSW+ MV G+ +  D       F    
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMP 144

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              +   +  L  +++  R    +   R + D++ +     D      ++  Y +   +D
Sbjct: 145 HKNVVSWTVMLGGLLQEGR----VDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLD 196

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +AR LFD+MP R++VTWT M+                  YA+ G +D AR++F+ M ++N
Sbjct: 197 EARALFDEMPKRNVVTWTAMVSG----------------YARNGKVDVARKLFEVMPERN 240

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
            +SW+AM+  Y + G+ ++A  LF  M    V    +    ++      G V++  R+F 
Sbjct: 241 EVSWTAMLLGYTHSGRMREASSLFDAMPVKPV----VVCNEMIMGFGLNGEVDKARRVFK 296

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
            M +      D   ++ M+ +  R G   EAL L   M  E
Sbjct: 297 GMKER-----DNGTWSAMIKVYERKGYELEALGLFRRMQRE 332



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 109/232 (46%), Gaps = 60/232 (25%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTR-------------------------------DLVT 226
            L+  + K  ++ +AR++FD MP R                               ++V+
Sbjct: 91  GLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVS 150

Query: 227 WTVMIG----------ANKFL-----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           WTVM+G          A K        DV+  T +I  Y + G +D AR +FD M ++NV
Sbjct: 151 WTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV 210

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           ++W+AM++ Y  +G+   A  LF +M       N +++ ++L   +H+G + E     SS
Sbjct: 211 VTWTAMVSGYARNGKVDVARKLFEVMPER----NEVSWTAMLLGYTHSGRMREA----SS 262

Query: 332 MWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++D   V+P V    C  M+   G  G +D+A ++ + M  E+D G W A++
Sbjct: 263 LFDAMPVKPVV---VCNEMIMGFGLNGEVDKARRVFKGMK-ERDNGTWSAMI 310



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 32/250 (12%)

Query: 203 YAKCKVIDDARQLFDQ--MPTRDLVTWTVMIGA--------NKFLL-------DVILGTA 245
           YA+   +D AR++FD+  +P R + +W  M+ A           LL       + +    
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNG 91

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I  + K G +  AR +FD M  +NV+SW++M+  Y  +G   +A  LF  M    V   
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV--- 148

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +++  +L      G V++  +LF     D     DV   T M+      GRLDEA  L 
Sbjct: 149 -VSWTVMLGGLLQEGRVDDARKLF-----DMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRW 424
           + M  +++   W A++     +  VD+    A+ L E  P+ N   +  +   Y ++GR 
Sbjct: 203 DEMP-KRNVVTWTAMVSGYARNGKVDV----ARKLFEVMPERNEVSWTAMLLGYTHSGRM 257

Query: 425 QDVAKIRDLM 434
           ++ + + D M
Sbjct: 258 REASSLFDAM 267



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 29/260 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETFR 147
           N++    ++  Y  +  + +A  LF  M  ++ VSW+VM+GG     +V D    F+   
Sbjct: 116 NVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP 175

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
           E        D   +  +I    +   +   R + D + K  +        A+V  YA+  
Sbjct: 176 E-------KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNV----VTWTAMVSGYARNG 224

Query: 208 VIDDARQLFDQMPTRDLVTWTVMI---------GANKFLLD------VILGTAVIDMYAK 252
            +D AR+LF+ MP R+ V+WT M+              L D      V++   +I  +  
Sbjct: 225 KVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGL 284

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
            G +D AR +F  M++++  +WSAMI  Y   G   +AL LF  M    +  N  + +S+
Sbjct: 285 NGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISV 344

Query: 313 LYACSHTGLVEEGLRLFSSM 332
           L  C     ++ G ++ + +
Sbjct: 345 LSVCVSLASLDHGKQVHAQL 364



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 22/231 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            IS L  C ++  +   +QVHAQ+V      +L VA+ L+ +Y     L  A  +FN   
Sbjct: 341 LISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFP 400

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-R 178
            +D V W+ M+ G+S+          F +    G+  D  T   V+ AC     +  G  
Sbjct: 401 LKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLE 460

Query: 179 LIHDIVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANK 235
           L   +  K  ++  I+ + C  LVD+  +   +++A +L ++MP   D + W  ++GA +
Sbjct: 461 LFETMKCKYQVEPGIEHYAC--LVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACR 518

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
             + + L    ++  A+             +  KN   +  +   Y Y G+
Sbjct: 519 THMKLDLAEVAVEKLAQ-------------LEPKNAGPYVLLSNMYAYKGR 556



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 21/198 (10%)

Query: 247 IDMYAKCGSIDSAREIFDR--MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           I  YA+ G +D AR++FD   +  + V SW+AM+AAY    Q ++AL LF  M       
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR---- 84

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N +++  L+      G++ E  R+F +M D      +V  +T MV    R G + EA +L
Sbjct: 85  NTVSWNGLISGHIKNGMLSEARRVFDTMPDR-----NVVSWTSMVRGYVRNGDVAEAERL 139

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV---YANA 421
              M   K+   W  +LG       VD     A+ L +  P+     V ++N+   Y   
Sbjct: 140 FWHMP-HKNVVSWTVMLGGLLQEGRVD----DARKLFDMMPEK--DVVAVTNMIGGYCEE 192

Query: 422 GRWQDVAKIRDLMTRRRL 439
           GR  +   + D M +R +
Sbjct: 193 GRLDEARALFDEMPKRNV 210


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 340/605 (56%), Gaps = 78/605 (12%)

Query: 30  LEPHGHEQNPMNP--RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGG 87
           +E   H ++P +P   + +Q GP  +                      + QVHA ++  G
Sbjct: 1   MEIKQHHKHPHSPAYNLLLQAGPRLKL---------------------LHQVHAHVIVSG 39

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETF 146
              +  +  KLL +     +++    +F  +   DS  ++ ++   SK  +F +     +
Sbjct: 40  YGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFY 99

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
              +   +   +YT   VI++C D   +  GR+IH  VL +G   D +V  AL+  Y KC
Sbjct: 100 TRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKC 159

Query: 207 KVIDDARQLFDQMPTRDLVTWTVM------------------------------------ 230
            V+ +AR++FD+M  R +VTW  M                                    
Sbjct: 160 GVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVL 219

Query: 231 -----IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                +GA             N   L+V+LGT++I+MY +CG++  ARE+FD M+++NV+
Sbjct: 220 SACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVV 279

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           +W+AMI+ YG +G G +A++LF  M  + +LPN ITFV++L AC+H GLV EG R+F SM
Sbjct: 280 AWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESM 339

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
            +++ + P+V+H+ C+VD+LGRAG LDEA   I+ +  E    +W A+LGAC++HKN  L
Sbjct: 340 REEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGL 399

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
               A+  L  +P NP HYV+LSN+YA AGR   V  +RD M R+ LKK  G++ I+++ 
Sbjct: 400 GAQVAEHRLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDR 459

Query: 453 KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
           K + FS+GD +H ++ EIY  L  L  K   AGY+  ++  +H+++EE +   L  HSEK
Sbjct: 460 KTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEK 519

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LAIAFGL+ T  GT IRI+KNLR+C DCHS IK++S I+ R IIVRD  RFHHF+ G+CS
Sbjct: 520 LAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCS 579

Query: 573 CRDYW 577
           C DYW
Sbjct: 580 CLDYW 584


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/579 (37%), Positives = 321/579 (55%), Gaps = 89/579 (15%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           T+ N+   N L+ +Y        A + F  M +RD VSW+ M+ G+S+    +     F 
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFS 263

Query: 148 EFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           + +    ++ D++TL  ++ AC + + + +G+ IH  +L++  +    V  AL+ MYAK 
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 207 KVID---------------------------------DARQLFDQMPTRDLVTWTVMI-- 231
             ++                                  AR++F+++  RD+V WT MI  
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 232 ----------------------GANKFLLDVILG-------------------------- 243
                                   N + L  +L                           
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 244 ----TAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                A+I MYAK G+I+ A+ +FD    +K ++SW++MI A   HG GK+A++LF  ML
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           S  + P+ IT+V +L AC+H GLVE+G + ++ M +   + P + HY CM+DL GRAG L
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
            EA   IESM +E D   WG+LL +C+IHKN DLA++AA+ LL   P N G Y+ L+NVY
Sbjct: 564 QEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVY 623

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           +  G+W++ A+ R LM  R ++K  G +WI ++N++H F V D  HPQ +EIY+++  + 
Sbjct: 624 SACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E+++  G+IPDT   LHD++EEVK   L  HSEKLAIAFGL+ TPE T +RIMKNLRVC 
Sbjct: 684 EEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCN 743

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHS IK +S +  R IIVRDA RFHHF+ G+CSCRDYW
Sbjct: 744 DCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 199/448 (44%), Gaps = 92/448 (20%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA------ 103
           P  QFT S      +SS  + + +   R++H+ +V  G  + + VA  LL +YA      
Sbjct: 139 PPSQFTVS----NVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPV 194

Query: 104 LHKALTD-------------------------AHALFNGMKERDSVSWSVMVGGFSKVAD 138
           + K + D                         A + F  M +RD VSW+ M+ G+S+   
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 139 FINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            +     F + +    ++ D++TL  ++ AC + + + +G+ IH  +L++  +    V  
Sbjct: 255 NLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           AL+ MYAK   ++ AR + +   T +              L++I  T+++D Y K G++ 
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSN--------------LNIIAFTSLLDGYTKLGNVK 360

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AREIF+++R ++V++W+AMI  Y  +G    AL+LF +M++    PN  T  ++L   S
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420

Query: 318 HTGLVEEGLRLFSS-------------------------------MWDDFAVRPDVKHYT 346
              ++E G ++ +S                               ++D    + ++  +T
Sbjct: 421 SLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWT 480

Query: 347 CMVDLLGRAGRLDEALKLIE---SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS---L 400
            M+  L + G   EA+ L E   S+ ++ D   +  +L AC    +V L E   K    +
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSAC---THVGLVEQGRKYYNMM 537

Query: 401 LERQPQNP--GHYVLLSNVYANAGRWQD 426
            E     P   HY  + ++Y  AG  Q+
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQE 565



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 48/280 (17%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           ++ F  R VH QI+  G    + + N L+  YA   +L  AH +F+ M  + + SW+ ++
Sbjct: 24  KDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLI 83

Query: 131 GGFSKVADFI-------------------------------NCFETFREFIRCGMQLDSY 159
            G++K  +F                                N    F + I   +    +
Sbjct: 84  SGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQF 143

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T+  V+ +C   + + +GR IH  V+K GL     V  +L++MYAKC     A+ +FD+M
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
             +++ TW                 A+I +Y + G  + A   F++M  ++++SW++MI+
Sbjct: 204 TVKNISTW----------------NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 280 AYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSH 318
            Y   G   +AL +F  ML+   L P+  T  S+L AC++
Sbjct: 248 GYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACAN 287



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
           KD   GR +H  ++K GL +  ++   L+  YAK   +  A  +FD+MP +   +W  +I
Sbjct: 24  KDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLI 83

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                             YAK G+ + +R +   M   + +SW+A+I  Y   G    A+
Sbjct: 84  SG----------------YAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAI 127

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            +F  M+S RV P++ T  ++L +C+    ++ G R   S      +   V   T ++++
Sbjct: 128 WMFAKMISERVPPSQFTVSNVLSSCAANQTLDIG-RKIHSFVVKLGLGSCVPVATSLLNM 186

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
             + G    A  + + M+V K+   W AL+    ++      E+AA S  E+ P
Sbjct: 187 YAKCGDPVIAKVVFDRMTV-KNISTWNALIS---LYMQSGQFELAA-SQFEKMP 235



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 38/247 (15%)

Query: 62  FFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF-- 115
           + ++++LS  +   I    +Q+HA  +  G  +   V N L+ +YA    +  A  +F  
Sbjct: 410 YTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL 469

Query: 116 -NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            NG KE   VSW+ M+   ++          F   +  GM+ D  T   V+ AC     +
Sbjct: 470 PNGKKE--IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLV 527

Query: 175 VMGRLIHDI---VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVM 230
             GR  +++   V +    +  + C  ++D+Y +  ++ +A    + MP   D + W  +
Sbjct: 528 EQGRKYYNMMTEVHEIEPTLSHYAC--MIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSL 585

Query: 231 IGANKF-------------LLDVILGT-----AVIDMYAKCGSIDSAREIFDRMRQKNV- 271
           + + K              LL +  G      A+ ++Y+ CG  ++A +    M+ + V 
Sbjct: 586 LASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVR 645

Query: 272 ----ISW 274
               ISW
Sbjct: 646 KEKGISW 652


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 325/586 (55%), Gaps = 85/586 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  IV  G  +N+ V N L+++Y+L   ++ A  +F+   + D V+W+VM+ G+++ 
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    + F E  R  +   S TL  V+ AC   KD+ +G+ +H  V    ++  + + 
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258

Query: 197 AALVDMYAKCKVIDDA-------------------------------RQLFDQMPTRD-- 223
            AL+DMYA C  +D A                               R  FD+MP RD  
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318

Query: 224 ---------------------------------------LVTWTVMIGA----------- 233
                                                  ++T    +GA           
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 378

Query: 234 --NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
             N+  +D  +G A+IDMY  CG+++ A  IF+ M  ++ ISW+A+I     +G G++AL
Sbjct: 379 DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEAL 438

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
           D+F  ML + + P+ +T + +L AC+H+G+V++G + F+ M     + P+V HY CMVDL
Sbjct: 439 DMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDL 498

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LGRAG L EA ++I++M V+ +  +WG+LLGACR+H++ ++AEMAA+ +LE +P+N   Y
Sbjct: 499 LGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVY 558

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           VLL N+YA   RW+ + ++R LM  R +KK PG + IE+   +H+F  GD  HPQS+EIY
Sbjct: 559 VLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIY 618

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  +S  L+ AGY PDT+    D+ EE K   +Y HSEKLAIAFGLI++  G  IRI+
Sbjct: 619 SKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIV 678

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+C DCH   K VS +  R +IVRD  RFHHF  G+CSC+DYW
Sbjct: 679 KNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 181/405 (44%), Gaps = 89/405 (21%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKER 121
           +S + +C+++ Q++Q+H+Q +  G ++N IV  +++     H+   +  A  +F+ M   
Sbjct: 23  LSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGP 82

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           +   W+ M+ G+S+V    +    + E +  G+  D YT PF+++       +  GR +H
Sbjct: 83  NHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELH 142

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GANKF---- 236
           D ++K G   + FV  AL+ +Y+    +  AR +FD+    D+VTW VMI G N+     
Sbjct: 143 DHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFD 202

Query: 237 ------------------------------LLDVILG-------------------TAVI 247
                                         L D+ +G                    A+I
Sbjct: 203 ESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALI 262

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG-------------------- 287
           DMYA CG +D+A  IFD M+ ++VISW+A++  +   GQ                     
Sbjct: 263 DMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTA 322

Query: 288 -----------KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
                      K+ L LF  M ++ + P+  T VS+L AC+H G +E G     +  D  
Sbjct: 323 MIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELG-EWIKAYIDKN 381

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            ++ D      ++D+    G +++A+++  +M   +D+  W A++
Sbjct: 382 EIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMP-HRDKISWTAVI 425


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/589 (37%), Positives = 329/589 (55%), Gaps = 64/589 (10%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA-- 107
           P  + T+ +   F  +    C +I + +Q HA ++    L N + ++KL+   AL  +  
Sbjct: 4   PSSKCTKLISVDFLKTH---CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGD 60

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  LF  M+  D    + M+ G+++  +       +   +  G+ +D+YT PFV+ A
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAA 120

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL--- 224
           C     + +GR  H  VLK+G   D FV  AL+  Y  C     A  +FD+   RD+   
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 225 ---------------------------------VTWTVMIGA---------NKFL----- 237
                                            VT   ++ A          KFL     
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 238 --------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    D++L TA++DMYAKCGSID A ++F RMR +NV +W+A+I     HG G+ 
Sbjct: 241 ELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGED 300

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+ LF  M   +++P+ +TF++LL ACSH GLV+EGL +F +M + F + P ++HY C+V
Sbjct: 301 AISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 360

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLL RA ++D+AL  IE+M ++ +  LW  LLGACR   + DLAE   + ++E +P + G
Sbjct: 361 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCG 420

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            YV+LSN+YA   +W    K+R  M  + ++K PG +WIE+   IHQF  GD +H Q+E+
Sbjct: 421 RYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQ 480

Query: 470 IYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           IY M+  ++ ++ L  G++P T   L D++EE K  +L+ HSEKLAIA GLI+TP G+ I
Sbjct: 481 IYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPI 540

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI+KNLRVC DCHSF+K  S +  R I+ RD +RFHHF+ G+CSC D+W
Sbjct: 541 RIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 589


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 238/645 (36%), Positives = 342/645 (53%), Gaps = 125/645 (19%)

Query: 58  VDPKFF-----ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA------LHK 106
           ++P  F     ++S+ + R +   ++VH+ IV  G   N+ V+N LL +YA      + K
Sbjct: 142 IEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK 201

Query: 107 ALTD-------------------------AHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
            + D                         A A F  M ERD V+W+ M+ G+++    + 
Sbjct: 202 VVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLR 261

Query: 142 CFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
             + F + +R  M   D +TL  V+ AC + + + +G  IH  ++ +G DI   V  AL+
Sbjct: 262 ALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALI 321

Query: 201 DMYAKCKVIDDARQL---------------------------------FDQMPTRDLVTW 227
            MY++C  ++ AR+L                                 FD +  RD+V W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAW 381

Query: 228 TV--------------------MIG----ANKFLLDVIL----------------GTAV- 246
           T                     M+G     N + L  +L                G+AV 
Sbjct: 382 TAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVK 441

Query: 247 -------------IDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALD 292
                        I MYAK GSI SA   FD +R +++ +SW++MI A   HG  ++AL+
Sbjct: 442 SGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALE 501

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  ML   + P+ IT+V +  AC+H GLV +G + F  M D   + P + HY CMVDL 
Sbjct: 502 LFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAG L EA + IE M +E D   WG+LL ACR++KN+DL ++AA+ LL  +P+N G Y 
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
            L+N+Y+  G+W++ AKIR  M   R+KK  G++WIEV++K+H F V D  HPQ  EIY 
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYI 681

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  + ++++  GY+PDT   LHD++EEVK   L  HSEKLAIAFGLI+TP+ T +RIMK
Sbjct: 682 TMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMK 741

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH+ IK +S +  R IIVRD  RFHHF+ G CSCRDYW
Sbjct: 742 NLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 147/295 (49%), Gaps = 22/295 (7%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  YA    +  +   F+ + +RDSVSW+ M+ G+  +  +        E +R G++
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
              +TL  V+ +    + +  G+ +H  ++K GL  +  V  +L++MYAKC     A+ +
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
           FD+M  +D+ +W  MI                 ++ + G +D A   F++M ++++++W+
Sbjct: 204 FDRMVVKDISSWNAMIA----------------LHMQVGQMDLAMAQFEQMAERDIVTWN 247

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSM-W 333
           +MI+ Y   G   +ALD+F  ML   +L P+R T  S+L AC++   +  G ++ S +  
Sbjct: 248 SMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVT 307

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE--KDEGLWGALLGACRI 386
             F +   V     ++ +  R G ++ A +LIE    +  K EG    L G  ++
Sbjct: 308 TGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 18/227 (7%)

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
            +L+H  V+KSGL    ++   L+++Y+K      AR+LFD+MP R   +W  ++ A   
Sbjct: 33  AQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA--- 89

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                        YAK G +DS+ E FDR+ Q++ +SW+ MI  Y   GQ  KA+ +   
Sbjct: 90  -------------YAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGE 136

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M+   + P++ T  ++L + + T  +E G ++ S +     +R +V     ++++  + G
Sbjct: 137 MMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIV-KLGLRGNVSVSNSLLNMYAKCG 195

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
               A  + + M V KD   W A++        +DLA    + + ER
Sbjct: 196 DPMMAKVVFDRMVV-KDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 310/527 (58%), Gaps = 49/527 (9%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           +FT +   K  ++S  +  ++ + +++HA +   G  +++ +   L+ +YA    +  A 
Sbjct: 178 RFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYAS 237

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CGMQLDSYTLPFVIRACRD 170
            +FNGM  R+ VSWS M+  ++K         TFRE +        +S T+  V++AC  
Sbjct: 238 YVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACAS 297

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  GRLIH  +L+ GLD                                        
Sbjct: 298 LAALEQGRLIHGYILRRGLDS--------------------------------------- 318

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                 +L VI  +A++ MY +CG +D  + +FDRM  ++V+SW+++I++YG HG G+KA
Sbjct: 319 ------ILPVI--SALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKA 370

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + +F  ML++   P  +TFVS+L ACSH GLVEEG RLF SMW D  ++P V+HY CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVD 430

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRA RLDEA K+++ M  E    +WG+LLG+CRIH NV+LAE A++ L   +P+N G+
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLL+++YA A  W +V +++ L+  R L+K+PG  W+EV  K++ F   D  +P  E+I
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQI 550

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  LV L+E ++  GYIP T   L++++ E K   +  HSEKLA+AFGLI T +G  IRI
Sbjct: 551 HAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRI 610

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLR+C DCH F K +S    + I+VRD NRFH F+ G CSC DYW
Sbjct: 611 TKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 62/288 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +I  C  R  +  G  +H  +L +G D D F+   L+ MY+    +D AR++FD+ 
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 220 PTRDLVTWTVM------------------------IGANKFLLDVILGTAV--------- 246
             R +  W  +                        + +++F    +L   V         
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHL 198

Query: 247 -------------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                    +DMYA+ G +D A  +F+ M  +NV+SWSAMIA Y
Sbjct: 199 TKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY 258

Query: 282 GYHGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
             +G+  +AL  F  M++      PN +T VS+L AC+    +E+G RL         + 
Sbjct: 259 AKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQG-RLIHGYILRRGLD 317

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             +   + +V + GR G+LD   ++ + M  ++D   W +L+ +  +H
Sbjct: 318 SILPVISALVTMYGRCGKLDVGQRVFDRMH-DRDVVSWNSLISSYGVH 364


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/554 (39%), Positives = 318/554 (57%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+    +  G  +++ +   L+ +++    +  A  LF  ++++D +S + M+ GF+   
Sbjct: 52  QILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNG 111

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           +  +    F+E +  G ++ S T+  +I          +   IH   +K G+     V  
Sbjct: 112 ETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVST 171

Query: 198 ALVDMYAKCKVIDDARQLFD---------------------------------------- 217
           AL  +Y +   +  ARQLFD                                        
Sbjct: 172 ALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNP 231

Query: 218 -------------QMPTRDLVTWT-VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                        Q+    L  W   +I +N+F  +V + TA+IDMYAKCGSI  ARE+F
Sbjct: 232 NPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELF 291

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M +KN ++W+AMI+ YG HG G++AL LF  MLSS V P  +TF+S+LYACSH GLV+
Sbjct: 292 DLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVK 351

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG  +F +M  DF   P  +HY CMVD+LGRAG+L +AL+ I++M VE    +WGALLGA
Sbjct: 352 EGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGA 411

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C IHK+ +LA +A++ L E  P+N G+YVL+SN+Y+   ++   A +R +  ++RL K P
Sbjct: 412 CMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTP 471

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G T IE+    H F+ GD +HPQS+ IY  L  L+ K+  AG+  +T   LHD++EE K 
Sbjct: 472 GCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKE 531

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             +  HSEKLAIAFGLI+T  G  IRI+KNLRVC DCH++ K +S IT+RVI+VRDANRF
Sbjct: 532 LTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRF 591

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 592 HHFKDGLCSCGDYW 605



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 131/314 (41%), Gaps = 57/314 (18%)

Query: 129 MVGGFSKVADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           M+ GF K + F +    F + +   G + D  T+  V+ A  + +++ +G  I  + +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--------------- 232
           G      +   L+ +++KC  ++ AR LF ++  +DL++   MI                
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 233 -------------------------ANKFLLDVILG--------------TAVIDMYAKC 253
                                     + +L + I G              TA+  +Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
             +  AR++FD   +K + SW+AMI+    +G    A+ LF  M  + V PN +T  S+L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            AC+  G +  G     S+        +V   T ++D+  + G +  A +L + M  EK+
Sbjct: 241 SACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP-EKN 298

Query: 374 EGLWGALLGACRIH 387
           E  W A++    +H
Sbjct: 299 EVTWNAMISGYGLH 312


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/514 (39%), Positives = 306/514 (59%), Gaps = 52/514 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I+  +  + I + R++  Q+ +  T +     N ++  YA    +  A  LF+ M +RD 
Sbjct: 315 IAGYVQSQQIEKARELFDQMPSRNTSS----WNTMVTGYAQCGNIDQAKILFDEMPQRDC 370

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SW+ M+ G+++          F +  R G  L+   L   + +C +   + +G+ +H  
Sbjct: 371 ISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGR 430

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++K+G                                               F    I G
Sbjct: 431 LVKAG-----------------------------------------------FQTGYIAG 443

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A++ MY KCGSI+ A ++F+ + +K+++SW+ MIA Y  HG GK+AL LF  M  + + 
Sbjct: 444 NALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IK 502

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ +T V +L ACSHTG V++G+  F+SM+ ++ +  + KHYTCM+DLLGRAGRLDEAL 
Sbjct: 503 PDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALN 562

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           L++SM    D   WGALLGA RIH + +L E AA+ + E +P N G YVLLSN+YA +GR
Sbjct: 563 LMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGR 622

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W++V ++R  M  + +KK+PG++W+E++NK H F+VGD +HP++E IY  L  L  +L+ 
Sbjct: 623 WREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKK 682

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            G++  T   LHDV+EE K   L  HSEKLA+AFG+++ P G  IR++KNLRVC DCH+ 
Sbjct: 683 DGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNA 742

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IKH+S IT+R IIVRD+NRFHHF  G+CSC DYW
Sbjct: 743 IKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 36/321 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF-ETFREF 149
           +LI  N +L  Y  +  L+ A ALFN M E+D VSW+ M+ GF++     N F E  R+ 
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQ-----NGFVEEARKI 175

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
               +  +  +   ++ A      I   R + D    S +D +      L+  Y + K +
Sbjct: 176 FDQMLVKNEISWNGLLSAYVQNGRIEDARRLFD----SKMDWEIVSWNCLMGGYVRKKRL 231

Query: 210 DDARQLFDQMPTRDLVTWTVMIG--ANKFLL-------------DVILGTAVIDMYAKCG 254
           DDAR LFD+MP RD ++W +MI   A   LL             DV   TA++  + + G
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +D A  IF+ M +KN +SW+AMIA Y    Q +KA +LF  M S     N  ++ +++ 
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSR----NTSSWNTMVT 347

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
             +  G +++   LF  M      + D   +  M+    ++G+ +EAL L   + +++D 
Sbjct: 348 GYAQCGNIDQAKILFDEM-----PQRDCISWAAMISGYAQSGQSEEALHLF--IKMKRDG 400

Query: 375 GLWGALLGACRIHKNVDLAEM 395
           G+      AC +    ++A +
Sbjct: 401 GILNRSALACALSSCAEIAAL 421



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 158/376 (42%), Gaps = 93/376 (24%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           ++++  N+ +  Y        A ++FNGM+ R +V+++ M+ G+       N F+  R+ 
Sbjct: 58  SDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSN----NKFDCARK- 112

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
                         V     DR       LI   V+ SG              Y K   +
Sbjct: 113 --------------VFEKMPDRD------LISWNVMLSG--------------YVKNGNL 138

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
             AR LF+QMP +D+V+W  M+                  +A+ G ++ AR+IFD+M  K
Sbjct: 139 SAARALFNQMPEKDVVSWNAMLSG----------------FAQNGFVEEARKIFDQMLVK 182

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP------------------------- 304
           N ISW+ +++AY  +G+ + A  LF   +   ++                          
Sbjct: 183 NEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMP 242

Query: 305 --NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             ++I++  ++   +  GL+ E  RLF    ++  +R DV  +T MV    + G LDEA 
Sbjct: 243 VRDKISWNIMITGYAQNGLLSEARRLF----EELPIR-DVFAWTAMVSGFVQNGMLDEAT 297

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANA 421
           ++ E M  EK+E  W A++      + ++     A+ L ++ P +N   +  +   YA  
Sbjct: 298 RIFEEMP-EKNEVSWNAMIAGYVQSQQIE----KARELFDQMPSRNTSSWNTMVTGYAQC 352

Query: 422 GRWQDVAKIRDLMTRR 437
           G       + D M +R
Sbjct: 353 GNIDQAKILFDEMPQR 368



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 127/301 (42%), Gaps = 49/301 (16%)

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
           +  Y +    + A  +F+ M  R  VT+  MI                  Y      D A
Sbjct: 67  ISAYMRKGQCESALSVFNGMRRRSTVTYNAMISG----------------YLSNNKFDCA 110

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           R++F++M  +++ISW+ M++ Y  +G    A  LF  M    V    +++ ++L   +  
Sbjct: 111 RKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQN 166

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           G VEE  ++F    D   V+ ++  +  ++    + GR+++A +L +S  ++ +   W  
Sbjct: 167 GFVEEARKIF----DQMLVKNEIS-WNGLLSAYVQNGRIEDARRLFDS-KMDWEIVSWNC 220

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           L+G     K +D     A+SL +R P ++   + ++   YA  G    +++ R L     
Sbjct: 221 LMGGYVRKKRLD----DARSLFDRMPVRDKISWNIMITGYAQNGL---LSEARRLFEELP 273

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE------LAGYIPDTNF 492
           ++ +  WT             G   +   +E  R+   + EK E      +AGY+     
Sbjct: 274 IRDVFAWT---------AMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQI 324

Query: 493 E 493
           E
Sbjct: 325 E 325


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/555 (38%), Positives = 317/555 (57%), Gaps = 57/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA ++      +L++ N LL +YA    L  A  LF+ M  RD V+W+ ++ G+S+   
Sbjct: 37  IHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDR 96

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRD--RKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +      E +R G++ + +TL  +++A       D++ GR +H + L+ G D + +V 
Sbjct: 97  PQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVS 156

Query: 197 AALVDMYAKCKVI-------------------------------DDARQLFDQMPTRDL- 224
            A++DMYA+C  +                               D A  LF  M   ++ 
Sbjct: 157 CAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVK 216

Query: 225 ---VTWTVMIGANKFL-------------------LDVILGTAVIDMYAKCGSIDSAREI 262
               T++ ++ A   +                   L   +G  ++DMYAK GSI+ A+++
Sbjct: 217 PTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKV 276

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDR+ +++V+SW++M+  Y  HG GK AL  F  ML +R+ PN ITF+ +L ACSH GL+
Sbjct: 277 FDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLL 336

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG R +  M   + V P + HY  MVDLLGRAG LD A++ I  M ++    +WGALLG
Sbjct: 337 DEG-RHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLG 395

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+HKN++L   AA+ + E     PG +VLL N+YA AGRW D AK+R +M    +KK 
Sbjct: 396 ACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKE 455

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           P  +W+E+EN++H F   D  HPQ  EI+ M   +S+K++  GY+PD++  L  +D++ +
Sbjct: 456 PACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQER 515

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSEKLA+AF L+ TP G+ IRI KN+R+CGDCHS  K VS +  R IIVRD NR
Sbjct: 516 EAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNR 575

Query: 563 FHHFEGGACSCRDYW 577
           FHHF  GACSC DYW
Sbjct: 576 FHHFCDGACSCEDYW 590



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 131/276 (47%), Gaps = 62/276 (22%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C     +  G++IH ++L S    D  +   L+++YAKC  +  AR+LFD+M +RD
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 224 LVTWTVMIGA------------------------NKFLL--------------------- 238
           +VTWT +I                          N+F L                     
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 239 -----------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                      +V +  A++DMYA+C  ++ A+ IFD M  KN +SW+A+IA Y   GQG
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM--WDDFAVRPDVKHY 345
            KA  LF  ML   V P   T+ S+L AC+  G +E+G  + + M  W +  V       
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV---AFVG 257

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             ++D+  ++G +++A K+ + ++ ++D   W ++L
Sbjct: 258 NTLLDMYAKSGSIEDAKKVFDRLA-KRDVVSWNSML 292


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/555 (38%), Positives = 326/555 (58%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   +  G  + + V+  L+ +Y+   ++  A  +F+ M  +  VSW+ M+ G+ + 
Sbjct: 296 RSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQN 355

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D     E F++ +   +++ + T+   + AC D  D+  GR +H ++ +  L  D  V 
Sbjct: 356 GDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVM 415

Query: 197 AALVDM-------------------------------YAKCKVIDDARQLFDQMPTRD-- 223
            +L+ M                               YA+   I++A   F +M  ++  
Sbjct: 416 NSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIK 475

Query: 224 ------------LVTWTVMIGAN-------KFLLD--VILGTAVIDMYAKCGSIDSAREI 262
                       L   +V+  A        +  LD  V + TA++DMYAKCG++ +AR++
Sbjct: 476 PDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKL 535

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M +++V +W+AMI  YG HG GK AL+LF  M    + PN +TF+ +L ACSH+GLV
Sbjct: 536 FDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLV 595

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG + F SM  D+ + P + HY  MVDLLGRA RL+EA   I+ M +E    ++GA+LG
Sbjct: 596 EEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLG 655

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIHKNV+L E AA  + +  P + G++VLL+N+YA A  W  VA++R  M ++ ++K 
Sbjct: 656 ACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKT 715

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ +E++N++H F  G ++HPQ+++IY  L TL  +++ AGY+PDTN  +HDV++ VK
Sbjct: 716 PGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTN-SVHDVEDVVK 774

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSEKLAIAF L+ T  GT I + KNLRVCGDCH+  K++S +T+R IIVRD  R
Sbjct: 775 EQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRR 834

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 835 FHHFKDGTCSCGDYW 849



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 172/366 (46%), Gaps = 56/366 (15%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C ++ ++ Q    I+  G  +  +   KL+ ++    +L +A  +F  ++++    +  M
Sbjct: 87  CTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTM 146

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + G+++ +   +    F      G++   Y   ++++ C D  D+  G+ IH  ++ +G 
Sbjct: 147 LKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGF 206

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVIL- 242
             + F    +V+MYAKC+++++A ++FD+MP RDLV W  +I      G  K  L+++L 
Sbjct: 207 ASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLR 266

Query: 243 -----------------------------------------------GTAVIDMYAKCGS 255
                                                           TA++DMY+KCGS
Sbjct: 267 MQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGS 326

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           + +AR IFDRM  K V+SW++MI  Y  +G    A+++F  M+  +V    +T +  L+A
Sbjct: 327 VGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHA 386

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+  G VE+G R    + D   +  DV     ++ +  +  R+D A ++ E++   K   
Sbjct: 387 CADLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQ-HKTLV 444

Query: 376 LWGALL 381
            W A++
Sbjct: 445 SWNAMI 450


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/491 (42%), Positives = 300/491 (61%), Gaps = 54/491 (10%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS---KVADFINCFETF 146
           +++ V N L+ +Y+  K +  A  +FN +  R  VSW+ M+ G++   +V++ +NCF   
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           +     GM+ DS+T+  VI A  +       + IH ++++S LD + FV           
Sbjct: 442 KSL---GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT---------- 488

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
                                                TA++DMY+KCG+I  AR++FD +
Sbjct: 489 -------------------------------------TALVDMYSKCGAIHMARKLFDMI 511

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
             ++VI+W+AMI  YG HG G+ ALDLF  M    V PN IT++S++ ACSH+GLV+EGL
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           R F SM  D+ + P + HY  MVDLLGRAGR+ EA   IE+M +     ++GA+LGAC+I
Sbjct: 572 RHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKI 631

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           HKN+++ E AAK L E  P   G++VLL+N+YA+  +W  VA++R  M ++ LKK PG +
Sbjct: 632 HKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCS 691

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
            +E+ N++H F  G +THPQS+ IY  L  L  +++ AGY+PDTN  L DV+++V+   L
Sbjct: 692 VVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLL 750

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
            SHSEKLAIAFGL+ T  GT I + KNLRVCGDCH+  K++S +T R IIVRD  RFHHF
Sbjct: 751 NSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHF 810

Query: 567 EGGACSCRDYW 577
           + G CSC DYW
Sbjct: 811 KNGICSCGDYW 821



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 169/359 (47%), Gaps = 65/359 (18%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C ++ ++ Q+   ++  G     +   KL+ +++ + ++ +A  +F  + ++    +  M
Sbjct: 59  CTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTM 118

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIV 184
           + G++K +      ET   F+ C M+ D      Y   ++++ C D  D+  G+ IH  +
Sbjct: 119 LKGYAKNSSL----ETALAFL-CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLL 238
           + +    + F    +V+MYAKC+ IDDA ++FD+MP RDLV+W  +I      G  K  L
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 239 DVIL------------------------------------------------GTAVIDMY 250
           +++L                                                 TA+ DMY
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           +KCGS+++AR IFD M QK V+SW++M+  Y  +G+ +KA+ +F  ML   + P  +T +
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
             L+AC+  G +E G +      D   +  D+     ++ +  +  R+D A  +  +++
Sbjct: 354 EALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN 411



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 164/370 (44%), Gaps = 66/370 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H Q++      N+     ++ +YA  + + DA+ +F+ M ERD VSW+ ++ GFS+ 
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E        G + DS TL  V+ A  D   +++G+ IH   +++G      + 
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL DMY+KC  ++ AR +FD M  + +V+W  M+                         
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346

Query: 234 -------------------------NKFLLDVILGT------AVIDMYAKCGSIDSAREI 262
                                    +KF+  + LG+      ++I MY+KC  +D A +I
Sbjct: 347 PTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDI 406

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ +  +  +SW+AMI  Y  +G+  +AL+ F  M S  + P+  T VS++ A +   + 
Sbjct: 407 FNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVT 466

Query: 323 E-----EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
                  GL + S +  +  V       T +VD+  + G +  A KL + +S ++    W
Sbjct: 467 RHAKWIHGLIIRSCLDKNIFVT------TALVDMYSKCGAIHMARKLFDMIS-DRHVITW 519

Query: 378 GALLGACRIH 387
            A++     H
Sbjct: 520 NAMIDGYGTH 529



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           +  T ++ +++K GSI+ A  +F+ +  K    +  M+  Y  +   + AL     M   
Sbjct: 82  LFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            V P    F  LL  C     ++ G  +   +  + FA   +V   T +V++  +  ++D
Sbjct: 142 DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA--NVFAMTGVVNMYAKCRQID 199

Query: 360 EALKLIESMSVEKDEGLWGALLGA 383
           +A K+ + M  E+D   W  ++  
Sbjct: 200 DAYKMFDRMP-ERDLVSWNTIIAG 222


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/604 (38%), Positives = 346/604 (57%), Gaps = 64/604 (10%)

Query: 34  GHEQNPMNPRVPMQMGPD-CQFTRSVDPKFF-ISSLLSCRNIFQI----RQVHAQIVAGG 87
           G+ QN M  R+ ++M    C+   ++ P F  I S+L   +  ++    +++H   +  G
Sbjct: 210 GYSQNGM-ARMALEMVKSMCE--ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
             + + ++  L+ +YA   +L  A  LF+GM ER+ VSW+ M+  + +  +       F+
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
           + +  G++    ++   + AC D  D+  GR IH + ++ GLD +  V  +L+ MY KCK
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386

Query: 208 VID-------------------------------DARQLFDQMPTR----DLVTWTVMIG 232
            +D                               DA   F QM +R    D  T+  +I 
Sbjct: 387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446

Query: 233 ANKFL-----------------LD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
           A   L                 LD  V + TA++DMYAKCG+I  AR IFD M +++V +
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI  YG HG GK AL+LF  M    + PN +TF+S++ ACSH+GLVE GL+ F  M 
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +++++   + HY  MVDLLGRAGRL+EA   I  M V+    ++GA+LGAC+IHKNV+ A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E AA+ L E  P + G++VLL+N+Y  A  W+ V ++R  M R+ L+K PG + +E++N+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +H F  G + HP S++IY  L  L   ++ AGY+PDTN  L  V+ +VK   L +HSEKL
Sbjct: 687 VHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKL 745

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AI+FGL+ T  GT I + KNLRVC DCH+  K++S +T R I+VRD  RFHHF+ GACSC
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSC 805

Query: 574 RDYW 577
            DYW
Sbjct: 806 GDYW 809



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 170/349 (48%), Gaps = 55/349 (15%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C ++ ++RQ+   +   G         KL+ ++  + ++ +A  +F  +  + +V +  M
Sbjct: 47  CSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTM 106

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + GF+KV+D     + F       ++   Y   ++++ C D  ++ +G+ IH +++KSG 
Sbjct: 107 LKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGF 166

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI-- 241
            +D F    L +MYAKC+ +++AR++FD+MP RDLV+W  ++      G  +  L+++  
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKS 226

Query: 242 ----------------------------------------------LGTAVIDMYAKCGS 255
                                                         + TA++DMYAKCGS
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +++AR++FD M ++NV+SW++MI AY  +   K+A+ +F  ML   V P  ++ +  L+A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           C+  G +E G R    +  +  +  +V     ++ +  +   +D A  +
Sbjct: 347 CADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/579 (37%), Positives = 321/579 (55%), Gaps = 89/579 (15%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           T+ N+   N L+ +Y        A + F  M +RD VSW+ M+ G+S+    +     F 
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFS 263

Query: 148 EFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           + +    ++ D++TL  ++ AC + + + +G+ IH  +L++  +    V  AL+ MYAK 
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 207 KVID---------------------------------DARQLFDQMPTRDLVTWTVMI-- 231
             ++                                  AR++F+++  RD+V WT MI  
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 232 ----------------------GANKFLLDVILG-------------------------- 243
                                   N + L  +L                           
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 244 ----TAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                A+I MYAK G+I+ A+ +FD    +K ++SW++MI A   HG GK+A++LF  ML
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           S  + P+ IT+V +L AC+H GLVE+G + ++ M +   + P + HY CM+DL GRAG L
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
            EA   IESM +E D   WG+LL +C+IHKN DLA++AA+ LL   P N G Y+ L+NVY
Sbjct: 564 QEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVY 623

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           +  G+W++ A+ R LM  R ++K  G +WI ++N++H F V D  HPQ +EIY+++  + 
Sbjct: 624 SACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E+++  G+IPDT   LHD++EEVK   L  HSEKLAIAFGL+ TPE T +RIMKNLRVC 
Sbjct: 684 EEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCN 743

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHS IK +S +  R IIVRDA RFHHF+ G+CSCRDYW
Sbjct: 744 DCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 199/448 (44%), Gaps = 92/448 (20%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA------ 103
           P  QFT S      +SS  + + +   R++H+ +V  G  + + VA  LL +YA      
Sbjct: 139 PPSQFTVS----NVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPV 194

Query: 104 LHKALTD-------------------------AHALFNGMKERDSVSWSVMVGGFSKVAD 138
           + K + D                         A + F  M +RD VSW+ M+ G+S+   
Sbjct: 195 IAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGY 254

Query: 139 FINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            +     F + +    ++ D++TL  ++ AC + + + +G+ IH  +L++  +    V  
Sbjct: 255 NLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN 314

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           AL+ MYAK   ++ AR + +   T +              L++I  T+++D Y K G++ 
Sbjct: 315 ALISMYAKSGGVEIARLIVEHNRTSN--------------LNIIAFTSLLDGYTKLGNVK 360

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AREIF+++R ++V++W+AMI  Y  +G    AL+LF +M++    PN  T  ++L   S
Sbjct: 361 PAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSS 420

Query: 318 HTGLVEEGLRLFSS-------------------------------MWDDFAVRPDVKHYT 346
              ++E G ++ +S                               ++D    + ++  +T
Sbjct: 421 SLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWT 480

Query: 347 CMVDLLGRAGRLDEALKLIE---SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS---L 400
            M+  L + G   EA+ L E   S+ ++ D   +  +L AC    +V L E   K    +
Sbjct: 481 SMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSAC---THVGLVEQGRKYYNMM 537

Query: 401 LERQPQNP--GHYVLLSNVYANAGRWQD 426
            E     P   HY  + ++Y  AG  Q+
Sbjct: 538 TEVHEIEPTLSHYACMIDLYGRAGLLQE 565



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 129/280 (46%), Gaps = 48/280 (17%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           ++ F  R VH QI+  G    + + N L+  YA   +L  AH +F+ M  + + SW+ ++
Sbjct: 24  KDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLI 83

Query: 131 GGFSKVADFI-------------------------------NCFETFREFIRCGMQLDSY 159
            G++K  +F                                N    F + I   +    +
Sbjct: 84  SGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQF 143

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T+  V+ +C   + + +GR IH  V+K GL     V  +L++MYAKC     A+ +FD+M
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
             +++ TW                 A+I +Y + G  + A   F++M  ++++SW++MI+
Sbjct: 204 TVKNISTW----------------NALISLYMQSGQFELAASQFEKMPDRDIVSWNSMIS 247

Query: 280 AYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSH 318
            Y   G   +AL +F  ML+   L P+  T  S+L AC++
Sbjct: 248 GYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACAN 287



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 22/234 (9%)

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
           KD   GR +H  ++K GL +  ++   L+  YAK   +  A  +FD+MP +   +W  +I
Sbjct: 24  KDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLI 83

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                             YAK G+ + +R +   M   + +SW+A+I  Y   G    A+
Sbjct: 84  SG----------------YAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAI 127

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            +F  M+S RV P++ T  ++L +C+    ++ G R   S      +   V   T ++++
Sbjct: 128 WMFAKMISERVPPSQFTVSNVLSSCAANQTLDIG-RKIHSFVVKLGLGSCVPVATSLLNM 186

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
             + G    A  + + M+V K+   W AL+    ++      E+AA S  E+ P
Sbjct: 187 YAKCGDPVIAKVVFDRMTV-KNISTWNALIS---LYMQSGQFELAA-SQFEKMP 235



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 38/247 (15%)

Query: 62  FFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF-- 115
           + ++++LS  +   I    +Q+HA  +  G  +   V N L+ +YA    +  A  +F  
Sbjct: 410 YTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDL 469

Query: 116 -NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            NG KE   VSW+ M+   ++          F   +  GM+ D  T   V+ AC     +
Sbjct: 470 PNGKKE--IVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLV 527

Query: 175 VMGRLIHDI---VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVM 230
             GR  +++   V +    +  + C  ++D+Y +  ++ +A    + MP   D + W  +
Sbjct: 528 EQGRKYYNMMTEVHEIEPTLSHYAC--MIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSL 585

Query: 231 IGANKF-------------LLDVILGT-----AVIDMYAKCGSIDSAREIFDRMRQKNV- 271
           + + K              LL +  G      A+ ++Y+ CG  ++A +    M+ + V 
Sbjct: 586 LASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVR 645

Query: 272 ----ISW 274
               ISW
Sbjct: 646 KEKGISW 652


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 344/619 (55%), Gaps = 73/619 (11%)

Query: 22  SSTTAAIAL-----EPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI 76
           +STT A +L      P  H  +  NP+            +S+D K  IS L   R+I Q+
Sbjct: 6   ASTTFAASLPFSGPSPKPHPNSNSNPKS----------LKSLDQKQIISLLQRSRHINQV 55

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             +HAQ++  G   +  +  +LL   +   A+  A  +F      +   ++ ++ GF   
Sbjct: 56  LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 115

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +++   + +   +   +  D+Y +  +++AC  +  +  GR +H   LK G   ++ V 
Sbjct: 116 GNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVR 175

Query: 197 AALVDMYAKCKVIDDARQLFDQMP----TRDLVTWTVMIGA------------------- 233
             ++++Y KC  + DAR++F++MP     +D V WT MI                     
Sbjct: 176 LRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQG 235

Query: 234 -----NKFL------------------------------LDVILGTAVIDMYAKCGSIDS 258
                N+F                               L++ +G A+I+MY++CGSID 
Sbjct: 236 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 295

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A+ +FD M+ ++VI+++ MI+    +G+ ++A++LF +M+  R+ P  +TFV +L ACSH
Sbjct: 296 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSH 355

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLV+ G  +F SM  D+ V P ++HY CMVDLLGR GRL+EA  LI +M +  D  + G
Sbjct: 356 GGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 415

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
            LL AC++HKN++L E  AK L +R   + G YVLLS+VYA++G+W++ A++R  M    
Sbjct: 416 TLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAG 475

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           ++K PG + IEV N+IH+F +GD  HPQ E IY  L  L+  L L GY P+    L D++
Sbjct: 476 MQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIE 535

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           +  K   L  HSE+LAI +GLI+T   T IR+MKNLRVC DCHS IK ++ ITRR I+VR
Sbjct: 536 DGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVR 595

Query: 559 DANRFHHFEGGACSCRDYW 577
           D NRFH+FE GACSC DYW
Sbjct: 596 DRNRFHYFENGACSCGDYW 614


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/566 (37%), Positives = 321/566 (56%), Gaps = 56/566 (9%)

Query: 68  LSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           L  RN  + + +  H +I+      ++ + N L+  Y+    +  A  +F+GM ER  VS
Sbjct: 70  LCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVS 129

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W+ M+G +++        + F E    G +   +T+  V+ AC    D +  + +H + +
Sbjct: 130 WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSV 189

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------ 233
           K+ +D++ +V  AL+D+YAKC +I DA Q+F+ M  +  VTW+ M+              
Sbjct: 190 KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALL 249

Query: 234 ------------NKFLL------------------------------DVILGTAVIDMYA 251
                       N+F L                              +V + ++ +DMYA
Sbjct: 250 LYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYA 309

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KCGS+  +  IF  +++KN+  W+ +I+ +  H + K+ + LF  M    + PN +TF S
Sbjct: 310 KCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSS 369

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           LL  C HTGLVEEG R F  M   + + P+V HY+CMVD+LGRAG L EA +LI+S+  +
Sbjct: 370 LLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD 429

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
               +WG+LL +CR++KN++LAE+AA+ L E +P+N G++VLLSN+YA   +W+++AK R
Sbjct: 430 PTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSR 489

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
            L+    +KK+ G +WI++++K+H FSVG+S HP+  EI   L  L  K    GY P   
Sbjct: 490 KLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVE 549

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
            ELHDV+   K   L  HSEKLA+ FGL+  PE + +RIMKNLR+C DCH F+K  S  T
Sbjct: 550 HELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMAT 609

Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
           RR IIVRD NRFHHF  G CSC D+W
Sbjct: 610 RRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C     ++  +  H  +++  L+ D  +   L++ Y+KC  ++ ARQ+FD M  R 
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
           LV+W  MIG                         ++F +  +L                 
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        GTA++D+YAKCG I  A ++F+ M+ K+ ++WS+M+A Y  +   ++
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL L+       +  N+ T  S++ ACS+   + EG ++ + +        +V   +  V
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAV 305

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           D+  + G L E+  +I S   EK+  LW  ++     H
Sbjct: 306 DMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKH 342


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/558 (38%), Positives = 316/558 (56%), Gaps = 59/558 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA  V  G   +  V N++L  Y+ H  + +   LF+ M E D VS++V++  +S+ 
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             +      FRE ++C M  D    PF  ++    +   + MGR +H   L +  D    
Sbjct: 330 DQYEASLHFFRE-MQC-MGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV--------------------MIGAN 234
           V  +LVDMYAKC++ ++A  +F  +P R  V+WT                     M G+N
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447

Query: 235 ----------------------------KFLL------DVILGTAVIDMYAKCGSIDSAR 260
                                        F++      +V  G+ ++DMYAKCGSI  A 
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++F+ M  +N +SW+A+I+A+  +G G+ A+  F  M+ S + P+ ++ + +L ACSH G
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCG 567

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE+G   F +M   + + P  KHY CM+DLLGR GR  EA KL++ M  E DE +W ++
Sbjct: 568 FVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 627

Query: 381 LGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           L ACRIHKN  LAE AA+ L   +  ++   YV +SN+YA AG W+ V  ++  M  R +
Sbjct: 628 LNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGI 687

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK+P ++W+EV +KIH FS  D THP  +EI R +  L+ ++E  GY PDT+  + DVDE
Sbjct: 688 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDE 747

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           ++K+ +L  HSE+LA+AF LI+TPEG  I +MKNLR C DCH+ IK +S I +R I VRD
Sbjct: 748 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRD 807

Query: 560 ANRFHHFEGGACSCRDYW 577
            +RFHHF  G CSC DYW
Sbjct: 808 TSRFHHFSEGVCSCGDYW 825



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 163/371 (43%), Gaps = 72/371 (19%)

Query: 76  IRQVHAQIVAGGTLTN--LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           + QVHA  V  G  TN  L V+N LL  Y   + L  A  LF  + E+DSV+++ ++ G+
Sbjct: 166 VGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGY 225

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            K   +      F +  + G Q   +T   V++A     D  +G+ +H + + +G   D 
Sbjct: 226 EKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA 285

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------- 233
            V   ++D Y+K   + + R LFD+MP  D V++ V+I +                    
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCM 345

Query: 234 -------------------------NKFLLDVILGTA---------VIDMYAKCGSIDSA 259
                                     +     +L TA         ++DMYAKC   + A
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEA 405

Query: 260 REIFDRMRQKNVISWSAMIAAY---GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             IF  + Q+  +SW+A+I+ Y   G HG G   L LF  M  S +  ++ TF ++L A 
Sbjct: 406 ELIFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLFTKMRGSNLRADQSTFATVLKAS 462

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           +    +  G +L +     F +R     +V   + +VD+  + G + +A+++ E M  ++
Sbjct: 463 ASFASLLLGKQLHA-----FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DR 516

Query: 373 DEGLWGALLGA 383
           +   W AL+ A
Sbjct: 517 NAVSWNALISA 527



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 159/398 (39%), Gaps = 71/398 (17%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           ++ G D    RS    F +  LL    +   R+V+ ++       N +  N ++  +   
Sbjct: 40  IKTGFDTDTCRS---NFIVEDLLRRGQVSAARKVYDEM----PHKNTVSTNTMISGHVKT 92

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR---CGMQLDSYTLP 162
             ++ A  LF+ M +R  V+W++++G +++ + F   F+ FR+  R   C +  D  T  
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLP-DHVTFT 151

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV--IDDARQLFDQMP 220
            ++  C D         +H   +K G D + F+  + V + + C+V  +D A  LF+++P
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211

Query: 221 TRDLVTWTVMI---------------------------------------GANKFLL--- 238
            +D VT+  +I                                       G + F L   
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271

Query: 239 ------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                       D  +G  ++D Y+K   +   R +FD M + + +S++ +I++Y    Q
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY- 345
            + +L  F  M           F ++L   ++   ++ G +L        A    + H  
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHVG 389

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             +VD+  +    +EA  + +S+  ++    W AL+  
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALISG 426



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
           R +   ++K+G D D      +V+   +   +  AR+++D+MP ++ V+   MI      
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISG---- 88

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
                       + K G + SAR++FD M  + V++W+ ++  Y  +    +A  LF  M
Sbjct: 89  ------------HVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136

Query: 298 L--SSRVLPNRITFVSLLYACS 317
              SS  LP+ +TF +LL  C+
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCN 158


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/561 (38%), Positives = 321/561 (57%), Gaps = 55/561 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R+I +  Q+H  IV  G     +VAN L+  Y+  +   D+   F    ++ + +WS ++
Sbjct: 29  RSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSII 88

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             F++        E  R+ +   ++ D + LP   ++C       +G+ +H + +K+G D
Sbjct: 89  SCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYD 148

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------- 230
            D FV ++LVDMYAKC  I  AR++FD+MP R++VTW+ M                    
Sbjct: 149 ADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEA 208

Query: 231 -----------------IGANKFLLDV-----------------ILGTAVIDMYAKCGSI 256
                            + AN  LL++                  +G++++ +Y+KCG +
Sbjct: 209 LFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDL 268

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A ++FD +  +N+  W+AM+ A   H   +K ++LF  M  S + PN ITF+++L AC
Sbjct: 269 EGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNAC 328

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLV+EG   F  M  +  + P  KHY  +VD+LGRAG+L+EAL+++ +M ++  E +
Sbjct: 329 SHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESV 387

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL +C IHKN +LA  AA  + E  P + G ++ LSN YA  GR++D AK R L+  
Sbjct: 388 WGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRD 447

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R  KK  G +W+E  NK+H F+ G+  H +S+EIY  L  L E++E AGY+ DT++ L +
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLRE 507

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VD + K   +  HSE+LAIAFGLI  P    IR+MKNLRVCGDCH+ IK +S  TRRVII
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVII 567

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFH FE G CSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/530 (39%), Positives = 311/530 (58%), Gaps = 59/530 (11%)

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR----CGMQLDSYTL 161
           + L  A ALF+ M  RD  SWS +V   ++          +R  +R     G+  + +T 
Sbjct: 107 RGLASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVD-NEFTA 165

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
              + A    +    GR +H  V++ G+D D  V +AL DMYAKC  +DDAR +FD+MP 
Sbjct: 166 SSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPV 225

Query: 222 RDLVTWTVM------------------------IGANKFLLDVIL--------------- 242
           RD+V+WT M                        I  N+F    +L               
Sbjct: 226 RDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQV 285

Query: 243 ---------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                           +A++ MY+K G + +A  +F  M + +++SW+AMI+ Y  +GQ 
Sbjct: 286 HGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQP 345

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
            +AL  F M+L S   P+ +TFV +L AC+H GLV++GL +F S+ D++ +     HY C
Sbjct: 346 DEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYAC 405

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           ++DLL R+G  + A ++I +MSV+ ++ LW +LLG CRIHKNV LA  AA++L E +P+N
Sbjct: 406 VIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPEN 465

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
           P  YV L+N+YA+ G + +V   R +M  + + K+P  +WIEV  ++H F VGD  HPQ+
Sbjct: 466 PATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQA 525

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           E++Y +L  L  K+   GY+ DT F LHDV++E K  ++  HSE+LA+AFG+IATP+G  
Sbjct: 526 EQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAP 585

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I++ KNLR+CGDCH+ IK +S I +R IIVRD+NRFHHF+ G+CSCRDYW
Sbjct: 586 IKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH ++       +    + L+++Y+ +  +  A  +F GM + D VSW+ M+ G+++ 
Sbjct: 283 KQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQN 342

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQ 193
                    F   +R G + D  T   V+ AC     +  G  + H I  + G++   D 
Sbjct: 343 GQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADH 402

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           + C  ++D+ ++  + + A ++ + M  +           NKFL   +LG
Sbjct: 403 YAC--VIDLLSRSGLFERAEEMINTMSVK----------PNKFLWASLLG 440


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 199/484 (41%), Positives = 294/484 (60%), Gaps = 47/484 (9%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V N L+ +YA    + DA   F+ + E++ VS++ +V G++K       F  F E    G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           + + ++T   ++        +  G  IH  +LK G   +Q +C AL              
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNAL-------------- 166

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                            I MY++CG+I++A ++F+ M  +NVIS
Sbjct: 167 ---------------------------------ISMYSRCGNIEAAFQVFNEMEDRNVIS 193

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W++MI  +  HG   +AL++F  ML +   PN IT+V++L ACSH G++ EG + F+SM+
Sbjct: 194 WTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMY 253

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            +  + P ++HY CMVDLLGR+G L EA++ I SM +  D  +W  LLGACR+H N +L 
Sbjct: 254 KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG 313

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
             AA+ +LE++P +P  Y+LLSN++A+AG+W+DV KIR  M  R L K  G +WIEVEN+
Sbjct: 314 RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENR 373

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +H+F VG+++HPQ+ +IY+ L  L+ K++  GYIPDT+F LHD++EE K   L+ HSEK+
Sbjct: 374 VHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKI 433

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           A+AFGLI+T +   IRI KNLRVCGDCH+ IK++S  T R I+VRD+NRFHH + G CSC
Sbjct: 434 AVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSC 493

Query: 574 RDYW 577
            DYW
Sbjct: 494 NDYW 497



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 87/177 (49%), Gaps = 6/177 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+H +++ GG  +N  + N L+ +Y+    +  A  +FN M++R+ +SW+ M+ GF+K 
Sbjct: 145 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 204

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GL--DIDQ 193
                  E F + +  G + +  T   V+ AC     I  G+   + + K  G+   ++ 
Sbjct: 205 GFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEH 264

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLDVILGTAVIDM 249
           + C  +VD+  +  ++ +A +  + MP   D + W  ++GA +   +  LG    +M
Sbjct: 265 YAC--MVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 319



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 12/125 (9%)

Query: 249 MYAKC---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ-GKKALDLFPMMLSSRVLP 304
           MYAKC   GS+D +R++F++M + NV+SW+A+I AY   G+  K+A++LF  M+S+ V  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV-- 58

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
                 SL+   + +G +E+  + F     D     ++  Y  +VD   +  + +EA  L
Sbjct: 59  -NCVGNSLISMYARSGRMEDARKAF-----DILFEKNLVSYNAIVDGYAKNLKSEEAFLL 112

Query: 365 IESMS 369
              ++
Sbjct: 113 FNEIA 117


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/604 (37%), Positives = 332/604 (54%), Gaps = 66/604 (10%)

Query: 33  HGHEQNPMNPRVPMQMGPDCQFTRSVDPKFF-ISSLLSC---RNIFQI-RQVHAQIVAGG 87
           HGH+Q+ +   + M+       +  + P  F +SS+L        F + RQ+H  +V   
Sbjct: 281 HGHDQHALELLLQMK-------SSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKAN 333

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
             ++  +A  L+ +YA H  L DA  +F+ + +RD V W+ ++ G S  A        F 
Sbjct: 334 ADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFC 393

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
              + G  ++  TL  V+++    + I   R +H +  K G   D  V   L+D Y KC 
Sbjct: 394 RMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCD 453

Query: 208 VI-------------------------------DDARQLFDQMPTR----DLVTWTVMIG 232
            +                               +DA +LF +M  +    D    + ++ 
Sbjct: 454 CLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLN 513

Query: 233 A-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
           A                    +F+ DV  G A++  YAKCGSI+ A   F  + +K V+S
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVS 573

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           WSAMI     HG GK+ALD+F  M+   + PN IT  S+L AC+H GLV+E  R F+SM 
Sbjct: 574 WSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           + F +    +HY CM+DLLGRAG+LD+A++L+ SM  + +  +WGALL A R+H++ +L 
Sbjct: 634 EMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELG 693

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
            +AA+ L   +P+  G +VLL+N YA+AG W DVAK+R LM   ++KK P  +W+E+++K
Sbjct: 694 RLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDK 753

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +H F VGD +HP++ +IY  L  L + +  AGY+P+   +LHDVD+  K   L  HSE+L
Sbjct: 754 VHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERL 813

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           A+AF LI+TP G  IR+ KNLR+C DCH+  K +S I  R II+RD NRFHHF  GACSC
Sbjct: 814 AVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSC 873

Query: 574 RDYW 577
           RDYW
Sbjct: 874 RDYW 877



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 165/379 (43%), Gaps = 66/379 (17%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            ++   + +++ Q   +HA ++  G     +  N LL  Y+  +    A  +F+ + +  
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEIPDPC 67

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            VSWS +V  +S  A   +    FR    C ++ + + LP V++   D      G  +H 
Sbjct: 68  HVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAG---FGTQLHA 124

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA-------- 233
           + + +GL  D FV  ALV MY     +D+AR +FD+    R+ V+W  ++ A        
Sbjct: 125 LAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCS 184

Query: 234 ----------------NKFLLDVIL------------------------------GTAVI 247
                           N+F    ++                                A++
Sbjct: 185 HAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALV 244

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMY+K G I  A  +F ++ + +V+SW+A I+    HG  + AL+L   M SS ++PN  
Sbjct: 245 DMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLI 365
           T  S+L AC+ +G    G ++   M        D  +Y    +VD+  + G LD+A K+ 
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFM---VKANADSDNYIAFGLVDMYAKHGLLDDAKKVF 361

Query: 366 ESMSVEKDEGLWGALLGAC 384
           + +  ++D  LW AL+  C
Sbjct: 362 DWIP-QRDLVLWNALISGC 379



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 175/415 (42%), Gaps = 88/415 (21%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK-ERDSVSWSVMVGGFSKV 136
           Q+HA  +A G   ++ VAN L+ +Y     + +A  +F+    ER++VSW+ ++  + K 
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +  + F E +  G+Q + +    V+ AC   +D+  GR +H +V+++G D D F  
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            ALVDMY+K   I  A  +F ++P  D+V+W   I                         
Sbjct: 241 NALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 234 -NKFLLDVILGT------------------------------AVIDMYAKCGSIDSAREI 262
            N F L  IL                                 ++DMYAK G +D A+++
Sbjct: 301 PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKV 360

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD + Q++++ W+A+I+   +  Q  +AL LF  M       NR T  ++L + +    +
Sbjct: 361 FDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAI 420

Query: 323 EEGLR-------------------LFSSMWD----DFAVRPDVKH-------YTCMVDLL 352
            +  +                   L  S W     ++A R   KH       +T M+  L
Sbjct: 421 SDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITAL 480

Query: 353 GRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
            +    ++A+KL   M    ++ D  +  +LL AC      +  +     L++RQ
Sbjct: 481 SQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/539 (40%), Positives = 319/539 (59%), Gaps = 33/539 (6%)

Query: 69  SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           SC     I R++H      G  + L V N L+ +Y     L++A  + + M  RD VSW+
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK-DIVMGRLIHDIVLK 186
            +V G+++   F +  E  RE     +  D+ T+  ++ A  +   + VM   + D+  K
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM--YVKDMFFK 268

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGA--------- 233
            G          ++ +Y K  +  +A +L+ +M       D V+ T ++ A         
Sbjct: 269 MGKK-SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 234 ----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                      K + +++L  A+IDMYAKCG ++ AR++F+ M+ ++V+SW+AMI+AYG+
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGF 387

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
            G+G  A+ LF  +  S ++P+ I FV+ L ACSH GL+EEG   F  M D + + P ++
Sbjct: 388 SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE 447

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           H  CMVDLLGRAG++ EA + I+ MS+E +E +WGALLGACR+H + D+  +AA  L + 
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
            P+  G+YVLLSN+YA AGRW++V  IR++M  + LKK PG + +EV   IH F VGD +
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HPQS+EIYR L  L +K++  GY+PD+   LHDV+EE K  +L  HSEKLAI F L+ T 
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627

Query: 524 E-----GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           E        IRI KNLR+CGDCH   K +S IT R II+RD NRFH F  G CSC DYW
Sbjct: 628 EEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 160/333 (48%), Gaps = 23/333 (6%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           +I  +R VH++I+      N  +  KL+  YA  K +  A  +F+ + ER+ +  +VM+ 
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +     +    + F     C ++ D YT P V++AC     IV+GR IH    K GL  
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFL---LDVILGTA 245
             FV   LV MY KC  + +AR + D+M  RD+V+W  ++     N+     L+V     
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233

Query: 246 VIDMYAKCGSIDS---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
            + +    G++ S                +++F +M +K+++SW+ MI  Y  +    +A
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           ++L+  M +    P+ ++  S+L AC  T  +  G ++   + +   + P++     ++D
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYI-ERKKLIPNLLLENALID 352

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +  + G L++A  + E+M   +D   W A++ A
Sbjct: 353 MYAKCGCLEKARDVFENMK-SRDVVSWTAMISA 384


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/516 (40%), Positives = 309/516 (59%), Gaps = 42/516 (8%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF- 149
           N++    ++  YA++  +  A  LF  M +++ V+W+ M+ G+++        E F+   
Sbjct: 201 NVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMP 260

Query: 150 -----------IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                      +  G+  +     +V    +++ D     LI  I  + G +++     +
Sbjct: 261 VKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIK-IYERKGFELEALALFS 319

Query: 199 L-------------VDMYAKC---KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
           L             + + + C     +D  RQ+  Q+              + F LD+ +
Sbjct: 320 LMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVR------------SHFDLDIYV 367

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            + +I MY KCG + + + +FDR   K+++ W+++IA Y  HG G+KAL++F  M SS  
Sbjct: 368 SSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGA 427

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ ITF+ +L AC +TG V+EGL +F SM   + V    +HY CMVDLLGRAG+L+EA+
Sbjct: 428 APDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAM 487

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            LIE+M VE D  +WGALL ACR HKN+DLAE+AAK LL+ +P + G Y+LLSN+YA+  
Sbjct: 488 NLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQS 547

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS-THPQSEEIYRMLVTLSEKL 481
           RW+DVA++R  M  R + K PG +WIEV+NK+H F+ G S +HP+ E I + L  L   L
Sbjct: 548 RWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASL 607

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
             AGY PD +F +HDVDEE KV +L  HSEK+A+A+GL+  P G  IR+MKNLRVCGDCH
Sbjct: 608 REAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCH 667

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S IK ++ +T R II+RDANRFHHF+ G CSCRD+W
Sbjct: 668 SAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 159/349 (45%), Gaps = 51/349 (14%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
            RNIF    + ++ V   T  N IVA      Y  +K   +A  LF+ M ER+++SW+ +
Sbjct: 35  ARNIFD--DLQSKTV---TSWNAIVAG-----YFHNKRPAEAQKLFDKMPERNTISWNGL 84

Query: 130 VGGFSK---VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           V G+ K   +++    F+   E  R  +   S    +V     D  +++  R+    V+ 
Sbjct: 85  VSGYVKNGMISEARKVFDKMPE--RNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVS 142

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
             + +   +    V         D+AR+LFD +P +D+V  T MIG              
Sbjct: 143 WTVMLGGLIEDGRV---------DEARRLFDMIPVKDVVASTNMIGG------------- 180

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
                  G +  AREIFD M Q+NV++W++MI+ Y  + +   A  LF +M       N 
Sbjct: 181 ---LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDK----NE 233

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           +T+ ++L   + +G + E   LF +M     V+P V     M+   G  G + +A  + +
Sbjct: 234 VTWTAMLKGYTRSGRINEAAELFKAM----PVKP-VAACNGMIMGFGLNGEVGKARWVFD 288

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
            M  EKD+G W AL+      K  +L  +A  SL++R+   P    ++S
Sbjct: 289 QMK-EKDDGTWSALIKIYE-RKGFELEALALFSLMQREGVRPNFPSIIS 335



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 31/238 (13%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           A+V  Y   K   +A++LFD+MP R+ ++W  ++                  Y K G I 
Sbjct: 52  AIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSG----------------YVKNGMIS 95

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR++FD+M ++NV+SW++M+  Y   G   +A  LF  M    V    +++  +L    
Sbjct: 96  EARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLI 151

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V+E  RLF     D     DV   T M+  L   GRL EA ++ + M  +++   W
Sbjct: 152 EDGRVDEARRLF-----DMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMP-QRNVVAW 205

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +++    ++  VD+    A+ L E  P +N   +  +   Y  +GR  + A++   M
Sbjct: 206 TSMISGYAMNNKVDV----ARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAM 259



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 22/203 (10%)

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I  +A+ G ID AR IFD ++ K V SW+A++A Y ++ +  +A  LF  M       N 
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----NT 78

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           I++  L+      G++ E  ++F  M +      +V  +T MV    + G +DEA  L  
Sbjct: 79  ISWNGLVSGYVKNGMISEARKVFDKMPER-----NVVSWTSMVRGYVQEGLIDEAELLFW 133

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA---NAGR 423
            M  EK+   W  +LG       VD     A+ L +  P      V  +N+     + GR
Sbjct: 134 RMP-EKNVVSWTVMLGGLIEDGRVD----EARRLFDMIPVK--DVVASTNMIGGLCSEGR 186

Query: 424 WQDVAKIRDLMTRRRLKKIPGWT 446
             +  +I D M +R    +  WT
Sbjct: 187 LSEAREIFDEMPQR---NVVAWT 206



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 9/184 (4%)

Query: 58  VDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           V P F   IS L  C ++  +   RQVH+Q+V      ++ V++ L+ +Y     L    
Sbjct: 326 VRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGK 385

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+    +D V W+ ++ G+++        E F E    G   D  T   V+ AC    
Sbjct: 386 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTG 445

Query: 173 DIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
            +  G  I +  +KS   +DQ     A +VD+  +   +++A  L + MP   D + W  
Sbjct: 446 KVKEGLEIFE-SMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGA 504

Query: 230 MIGA 233
           ++ A
Sbjct: 505 LLSA 508


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/561 (39%), Positives = 322/561 (57%), Gaps = 58/561 (10%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA-----LHKALTDAHALFNGMKERDSVSW 126
           ++  ++Q HA I+  G L +  +A  L+  YA      + +   +  +F+ +++ +   W
Sbjct: 67  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 126

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + M+    +  +       + E +    + + YT P V++AC D   +  G  +H  ++K
Sbjct: 127 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 186

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ---------MPTR--------------- 222
            GL  D  + ++ + MYA    + +AR++ D          MP R               
Sbjct: 187 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRKGCFMEALEIFHQMQ 246

Query: 223 ------------DLVTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSID 257
                        +++    +GA             N   LD +LGT+++DMYAKCG ID
Sbjct: 247 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 306

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A E+F++M  K V SW+AMI     HG+ + A+DLF  M    + PN ITFV +L AC+
Sbjct: 307 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACA 363

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GLV++GL +F+SM  ++ V P ++HY C+VDLLGRAG L EA K++ S+  E    +W
Sbjct: 364 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 423

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           GALLGACR H NV+L E   K LLE +PQN G Y LLSN+YA AGRW++V ++R LM  R
Sbjct: 424 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKER 483

Query: 438 RLKKIPGWTWIEV-ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
            +K  PG + I++   ++H+F +GD +HPQ ++IY+ML  + E+L++ GY PD +  L D
Sbjct: 484 GIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFD 543

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           +DEE K   ++ HSEKLAI FGLI T  GT IRI+KNLRVC DCHS  K +S +  R II
Sbjct: 544 IDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREII 603

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD  R+HHF  GACSC+D+W
Sbjct: 604 VRDRIRYHHFRNGACSCKDFW 624


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/562 (40%), Positives = 311/562 (55%), Gaps = 56/562 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIV--ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           N+   + +HA ++      ++ V     LL +YA    L  A  LFNG+ ++  VSW+ M
Sbjct: 210 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 269

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + G  +        + F       +  +  T+  +I  C     + +G+ +H  +L++G 
Sbjct: 270 IAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGF 329

Query: 190 DIDQFVCAALVDMYAKC-------------------------------KVIDDARQLFDQ 218
            +   +  ALVDMY KC                                 ID A  LFDQ
Sbjct: 330 SVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQ 389

Query: 219 M------PTR----------------DLVTWT-VMIGANKFLLDVILGTAVIDMYAKCGS 255
           M      PT+                DL  W    I   +  +D IL TA++DMYAKCG 
Sbjct: 390 MRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGD 449

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I++A  +F     +++  W+A+I  +  HG G++ALD+F  M    V PN ITF+ LL+A
Sbjct: 450 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHA 509

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH GLV EG +LF  M   F + P ++HY CMVDLLGRAG LDEA ++I+SM ++ +  
Sbjct: 510 CSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTI 569

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +WGAL+ ACR+HKN  L E+AA  LLE +P+N G+ VL+SN+YA A RW D A +R  M 
Sbjct: 570 VWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMK 629

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
              +KK PG + IEV   +H+F +GD +HPQ   I  ML  +  KL  AGY+PDT+  L 
Sbjct: 630 TVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLL 689

Query: 496 DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           ++DEE K   L  HSEKLA+AFGLI+T   T IRI+KNLRVC DCH+  K +S I  RVI
Sbjct: 690 NIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVI 749

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           IVRD NRFHHF  G CSC DYW
Sbjct: 750 IVRDRNRFHHFREGYCSCGDYW 771



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/400 (25%), Positives = 181/400 (45%), Gaps = 61/400 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H  ++  G   ++ V N L+ +Y     +  A  +F+ M ERD VSWS M+   S+ 
Sbjct: 114 KEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRN 173

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV- 195
            +F    E  RE     ++     +  ++    D  ++ MG+ +H  V+++  +    V 
Sbjct: 174 KEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVP 233

Query: 196 -CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------N 234
              AL+DMYAKC  +  ARQLF+ +  + +V+WT MI                      N
Sbjct: 234 TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEEN 293

Query: 235 KFLLDVILGTAVID----------------------------------MYAKCGSIDSAR 260
            F  ++ + + +++                                  MY KC  I +AR
Sbjct: 294 IFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNAR 353

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD  + ++V+ W+AM++AY       +A +LF  M +S V P ++T VSLL  C+  G
Sbjct: 354 ALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 413

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL-IESMSVEKDEGLWGA 379
            ++ G +   S  D   V  D    T +VD+  + G ++ A +L IE++S  +D  +W A
Sbjct: 414 ALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAIS--RDICMWNA 470

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           ++    +H   + A +   + +ERQ   P     +  ++A
Sbjct: 471 IITGFAMHGYGEEA-LDIFAEMERQGVKPNDITFIGLLHA 509



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 60/283 (21%)

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
           ++  P V++AC       +G+ IH  VLK GLD D FV  AL+ MY +C  ++ AR +FD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 218 QMPTRDLVTWTVMIGA---NK---FLLDVI-------------LGTAVIDMYAKCGSIDS 258
           +M  RD+V+W+ MI +   NK     L++I                ++++++A   ++  
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 259 AREIFDR-MRQKN-----VISWSAMIAAYG-----------YHGQGKKALDLFPMMLSSR 301
            + +    +R  N     V + +A++  Y            ++G  +K +  +  M++  
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 302 VLPNR--------------------ITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRP 340
           +  NR                    IT +SL+  C  TG ++ G +L + +  + F+V  
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV-- 331

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            +   T +VD+ G+   +  A  L +S +  +D  +W A+L A
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDS-TQNRDVMIWTAMLSA 373


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/529 (40%), Positives = 310/529 (58%), Gaps = 57/529 (10%)

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CGMQLDS-YTLP 162
           + L  A ALF+ M  RD  SWS +V    +          +R  +R   G   D+ +T  
Sbjct: 107 RGLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTAS 166

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
             + A    +    GR +H  V++ G+D D  V +AL DMYAK   +DDAR +FD+MP R
Sbjct: 167 SALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVR 226

Query: 223 DLVTWTVM------------------------IGANKFLLDVIL---------------- 242
           D+V+WT M                        I  N+F    +L                
Sbjct: 227 DVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVH 286

Query: 243 --------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                         G+A++ MY+K G + +A  +F  M + +++SW+AMI+ Y  +GQ  
Sbjct: 287 GRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPD 346

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL  F M+LSS   P+ +TFV +L AC+H GLV++GL +F S+ D + +     HY C+
Sbjct: 347 EALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACV 406

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           +DLL R+G  + A  +I +M V+ ++ LW +LLG CRIHKNV LA  AA++L E +P+NP
Sbjct: 407 IDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENP 466

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             YV L+N+YA+ G + +V  +R  M  R + K+P  +WIEV  ++H F VGD +HPQ+E
Sbjct: 467 ATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAE 526

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           EIY +L  L  K+   GY+ DT F LHDV++E K  ++  HSE+LA+AFG+IATP+G+ I
Sbjct: 527 EIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPI 586

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++ KNLR+CGDCH+ IK +S I +R IIVRD+NRFHHF+ G+CSCRDYW
Sbjct: 587 KVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 15/170 (8%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH ++    T  +    + L+++Y+ +  +  A  +F GM + D VSW+ M+ G+++ 
Sbjct: 283 KQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQN 342

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQ 193
                    F   +  G + D  T   V+ AC     +  G  + H I  K G++   D 
Sbjct: 343 GQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADH 402

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           + C  ++D+ ++  + + A  + + MP +           NKFL   +LG
Sbjct: 403 YAC--VIDLLSRSGLFERAEDMINTMPVK----------PNKFLWASLLG 440


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 310/527 (58%), Gaps = 49/527 (9%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           +FT +   K  ++S  +  ++ + +++HA +   G  +++ +   L+ +YA    +  A 
Sbjct: 178 RFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS 237

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CGMQLDSYTLPFVIRACRD 170
            +F GM  R+ VSWS M+  ++K         TFRE +R       +S T+  V++AC  
Sbjct: 238 YVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACAS 297

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+LIH  +L+ GLD                                        
Sbjct: 298 LAALEQGKLIHGYILRRGLDS--------------------------------------- 318

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                 +L VI  +A++ MY +CG ++  + +FDRM  ++V+SW+++I++YG HG GKKA
Sbjct: 319 ------ILPVI--SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + +F  ML++   P  +TFVS+L ACSH GLVEEG RLF +MW D  ++P ++HY CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRA RLDEA K+++ M  E    +WG+LLG+CRIH NV+LAE A++ L   +P+N G+
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLL+++YA A  W +V +++ L+  R L+K+PG  W+EV  K++ F   D  +P  E+I
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQI 550

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  LV L+E ++  GYIP T   L++++ E K   +  HSEKLA+AFGLI T +G  IRI
Sbjct: 551 HAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRI 610

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLR+C DCH F K +S    + I+VRD NRFH F+ G CSC DYW
Sbjct: 611 TKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 62/288 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +I  C  R  +     +H  +L +G D D F+   L+ MY+    +D AR++FD+ 
Sbjct: 79  TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 220 PTRDLVTWTVM------------------------IGANKFLLDVILGTAV--------- 246
             R +  W  +                        + +++F    +L   V         
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHL 198

Query: 247 -------------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                    +DMYA+ G +D A  +F  M  +NV+SWSAMIA Y
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258

Query: 282 GYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
             +G+  +AL  F  M+  +    PN +T VS+L AC+    +E+G +L         + 
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLD 317

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             +   + +V + GR G+L+   ++ + M  ++D   W +L+ +  +H
Sbjct: 318 SILPVISALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVH 364


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/529 (42%), Positives = 321/529 (60%), Gaps = 32/529 (6%)

Query: 65  SSLLSCRNIFQIR---QVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           S++ +C N+  +R   ++H   +    L ++L+V N L+  YA  +++  A   F  +K+
Sbjct: 217 SAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQ 276

Query: 121 RDSVSWSVM--VGGFSKVADFINCFETF-REFIRCGM-----QLDSYTLPFVIRACRDRK 172
            D VSW+ M  V GF++  D     E F R  I C +       D      +I AC    
Sbjct: 277 TDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQS- 335

Query: 173 DIVMGRLIH--DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
               GR ++  D++ +  L   +     +V     C  +   RQ       +++  + + 
Sbjct: 336 ----GRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQ------GKEIHQFIIR 385

Query: 231 IGAN--KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
            G +   F+L+     ++IDMY +CGSI  +R IFD M Q++++SW+ MI+ YG HG G 
Sbjct: 386 CGLDTCNFILN-----SLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGM 440

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
            A++LF    +  + PN ITF +LL ACSH+GL+EEG + F  M  ++A+ P V+ Y CM
Sbjct: 441 DAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACM 500

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLL RAG+ +E L+ IE M  E +  +WG+LLGACRIH N DLAE AA+ L E +PQ+ 
Sbjct: 501 VDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSS 560

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
           G+YVL++N+Y+ AGRW+D AKIR LM  R + K PG +WIEV+ K+H F VGD++HP  E
Sbjct: 561 GNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLME 620

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +I   + +L   ++  GY+PDTNF L DVDE+ K  +L  HSEK+A+AFGLI+T  GT +
Sbjct: 621 QISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPL 680

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI+KNLRVCGDCHS  K +S + +R II+RD  RFHHF  G CSC DYW
Sbjct: 681 RIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 187/434 (43%), Gaps = 115/434 (26%)

Query: 61  KFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           + + S L  CR ++ +R   QVHAQ+V  G      + ++LL +Y     + DA  +F+ 
Sbjct: 11  EIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDK 70

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M ER+  SW+ ++  +  + D+    + F   +  G++ D +  P V +AC + K+  +G
Sbjct: 71  MSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVG 130

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
           + ++D +L  G + +  V  +++DM+ KC  +D AR+ F+++  +D+  W +M+      
Sbjct: 131 KDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSK 190

Query: 234 ----------NKFLLD------VILGTAV------------------------------- 246
                      K +L+      + + +AV                               
Sbjct: 191 GEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLV 250

Query: 247 ----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY--HGQGKKALDLFPMM--- 297
               +D YAKC S++ AR  F  ++Q +++SW+AM+A  G+  +G GK AL+ F  M   
Sbjct: 251 GNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIA 310

Query: 298 ------LSSR--------------------------------VLPNRITFVSLLYACSHT 319
                 LS+R                                V  N +T VS L ACS  
Sbjct: 311 CSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 370

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTC------MVDLLGRAGRLDEALKLIESMSVEKD 373
             + +G  +       F +R  +   TC      ++D+ GR G + ++ ++ + M  ++D
Sbjct: 371 AALRQGKEI-----HQFIIRCGLD--TCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRD 422

Query: 374 EGLWGALLGACRIH 387
              W  ++    +H
Sbjct: 423 LVSWNVMISVYGMH 436


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/561 (39%), Positives = 321/561 (57%), Gaps = 56/561 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R + Q R +HA I +     +L++ N +L +YA   +L +A  LF+ M  +D VSW+V++
Sbjct: 119 RKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            G+S+          F + +  G Q + +TL  +++A         GR +H   LK G D
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238

Query: 191 IDQFVCAALVDMYAKCKVIDDAR-------------------------------QLFDQM 219
           ++  V ++L+DMYA+   + +A+                               +LF QM
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM 298

Query: 220 ------PTRDLVTWTVMIGANKFLLD-----------------VILGTAVIDMYAKCGSI 256
                 PT      +V+  A+   L+                   +G  +IDMYAK GSI
Sbjct: 299 LRQGFEPTH-FTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 357

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             A+++F R+ +++++SW+++I+ Y  HG G +AL LF  ML ++V PN ITF+S+L AC
Sbjct: 358 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 417

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH+GL++EG   F  M     +   V H+  +VDLLGRAGRL+EA K IE M ++    +
Sbjct: 418 SHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 476

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALLGACR+HKN+DL   AA+ + E  P + G +VLLSN+YA+AGR  D AK+R +M  
Sbjct: 477 WGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKE 536

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             +KK P  +W+E+EN++H F   D +HP  EEI RM   +S K++  GY+PDT+  L  
Sbjct: 537 SGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFF 596

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++++ +   L  HSEKLA+AF ++ TP G  IRI KN+R+CGDCHS  K  S +  R II
Sbjct: 597 MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREII 656

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF  G CSCRDYW
Sbjct: 657 VRDTNRFHHFLHGMCSCRDYW 677



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 192/463 (41%), Gaps = 123/463 (26%)

Query: 148 EFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           + I CG      TL   ++  C   + +  GR IH  +  S  + D  +   +++MYAKC
Sbjct: 94  DLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC 153

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL 242
             +++A+ LFD+MPT+D+V+WTV+I                          N+F L  +L
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213

Query: 243 ------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                         G++++DMYA+   +  A+ IF+ +  KNV+
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG------- 325
           SW+A+IA +   G+G+  + LF  ML     P   T+ S+L AC+ +G +E+G       
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHV 332

Query: 326 --------LRLFSSMWDDFA---------------VRPDVKHYTCMVDLLGRAGRLDEAL 362
                     + +++ D +A               V+ D+  +  ++    + G   EAL
Sbjct: 333 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 392

Query: 363 KLIESM---SVEKDEGLWGALLGACRIHKNVDLA----EMAAKSLLERQPQNPGHYVLLS 415
           +L E M    V+ +E  + ++L AC     +D      E+  K  +E Q     H+V + 
Sbjct: 393 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ---VAHHVTVV 449

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           ++   AGR  +  K  + M  +    +  W  +    ++H+                   
Sbjct: 450 DLLGRAGRLNEANKFIEEMPIKPTAAV--WGALLGACRMHK------------------- 488

Query: 476 TLSEKLELAGYIPDTNFEL--HDVDEEVKVGNLYSHSEKLAIA 516
                ++L  Y  +  FEL  HD    V + N+Y+ + +L+ A
Sbjct: 489 ----NMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDA 527



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/232 (19%), Positives = 103/232 (44%), Gaps = 22/232 (9%)

Query: 62  FFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           F  SS+L+C +   + Q   VHA ++  G      + N L+ +YA   ++ DA  +F  +
Sbjct: 308 FTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRL 367

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            ++D VSW+ ++ G+++        + F + ++  +Q +  T   V+ AC     +  G+
Sbjct: 368 VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 427

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGANKFL 237
              +++ K  ++        +VD+  +   +++A +  ++MP +     W  ++GA +  
Sbjct: 428 YYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMH 487

Query: 238 LDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKNV 271
            ++ LG    +                  +YA  G +  A ++   M++  V
Sbjct: 488 KNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGV 539


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/487 (41%), Positives = 282/487 (57%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  Y  +  +  A  LF+ M +RD VSW+ ++ G+++   +      F E  
Sbjct: 324 NISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMK 383

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G   +  T    +  C D   + +G+ +H  V+K+G +   FV               
Sbjct: 384 RDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFV--------------- 428

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCGS D A ++F+ + +K+
Sbjct: 429 --------------------------------GNALLGMYFKCGSTDEANDVFEGIEEKD 456

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIA Y  HG G++AL LF  M  + V P+ IT V +L ACSH+GL++ G   F 
Sbjct: 457 VVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFY 516

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  D+ V+P  KHYTCM+DLLGRAGRL+EA  L+ +M  +     WGALLGA RIH N 
Sbjct: 517 SMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNT 576

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L E AA+ + + +PQN G YVLLSN+YA +GRW DV K+R  M    ++K+ G++W+EV
Sbjct: 577 ELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEV 636

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NKIH FSVGD  HP+ + IY  L  L  K+   GY+  T   LHDV+EE K   L  HS
Sbjct: 637 QNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHS 696

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+AFG++  P G  IR+MKNLRVC DCH+ IKH+S I  R+II+RD++RFHHF  G 
Sbjct: 697 EKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGI 756

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 757 CSCGDYW 763



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 133/298 (44%), Gaps = 42/298 (14%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF---- 146
           +L   N +L  Y  ++ L +AH LF+ M ++D VSW+ M+ G+++        E F    
Sbjct: 107 DLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMP 166

Query: 147 -REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            R  I     L +Y     ++  R        RL      +S  ++  + C  L+  Y K
Sbjct: 167 HRNSISWNGLLAAYVHNGRLKEAR--------RLFES---QSNWELISWNC--LMGGYVK 213

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMY 250
             ++ DARQLFD+MP RD+++W  MI                    + DV   TA++  Y
Sbjct: 214 RNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGY 273

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            + G +D AR+ FD M  KN IS++AM+A Y  + +   A +LF  M    +     ++ 
Sbjct: 274 VQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNI----SSWN 329

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +++      G + +  +LF     D   + D   +  ++    + G  +EAL +   M
Sbjct: 330 TMITGYGQNGGIAQARKLF-----DMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEM 382



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 132/283 (46%), Gaps = 53/283 (18%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFL-----LDVIL 242
           A++  Y +      AR LFD+MP RDL +W VM+           A+K        DV+ 
Sbjct: 82  AMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVS 141

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP------- 295
             A++  YA+ G +D ARE+F++M  +N ISW+ ++AAY ++G+ K+A  LF        
Sbjct: 142 WNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWEL 201

Query: 296 --------------MMLSSRVLPNR------ITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
                         M+  +R L +R      I++ +++   +  G + +  RLF    ++
Sbjct: 202 ISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLF----NE 257

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
             +R DV  +T MV    + G +DEA K  + M V K+E  + A+L     +K +    +
Sbjct: 258 SPIR-DVFTWTAMVSGYVQNGMVDEARKYFDEMPV-KNEISYNAMLAGYVQYKKM----V 311

Query: 396 AAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            A  L E  P +N   +  +   Y   G      K+ D+M +R
Sbjct: 312 IAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQR 354



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 18/229 (7%)

Query: 33  HGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTL 89
           +GH +  +N  V M+   +     S +   F  +L +C +I  +   +QVH Q+V  G  
Sbjct: 369 NGHYEEALNMFVEMKRDGE-----SSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFE 423

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           T   V N LL +Y    +  +A+ +F G++E+D VSW+ M+ G+++          F   
Sbjct: 424 TGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESM 483

Query: 150 IRCGMQLDSYTLPFVIRACR-----DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
            + G++ D  T+  V+ AC      DR       +  D  +K       + C  ++D+  
Sbjct: 484 KKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKP--TSKHYTC--MIDLLG 539

Query: 205 KCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           +   +++A  L   MP      +W  ++GA++   +  LG    +M  K
Sbjct: 540 RAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFK 588



 Score = 46.2 bits (108), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 18/168 (10%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D++     I  + + G  DSA  +F+ M +++ +S++AMI+ Y  + +   A DLF  M 
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKM- 103

Query: 299 SSRVLPNRITFV--SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
                P R  F    +L        + E  +LF     D   + DV  +  M+    + G
Sbjct: 104 -----PERDLFSWNVMLTGYVRNRRLGEAHKLF-----DLMPKKDVVSWNAMLSGYAQNG 153

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
            +DEA ++   M   ++   W  LL A  +H N  L E  A+ L E Q
Sbjct: 154 FVDEAREVFNKMP-HRNSISWNGLL-AAYVH-NGRLKE--ARRLFESQ 196


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/554 (36%), Positives = 311/554 (56%), Gaps = 54/554 (9%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+HA  +  G + +  V+  L+ +Y+    + +A  LF      D  SW+ M+ G+    
Sbjct: 1029 QIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSG 1088

Query: 138  DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            DF      +      G + +  TL    +A      +  G+ I  +V+K G ++D FV +
Sbjct: 1089 DFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS 1148

Query: 198  ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
             ++DMY KC  ++ AR++F+++P+ D V WT M                           
Sbjct: 1149 GVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP 1208

Query: 231  -----------------------IGANKFLL----DVILGTAVIDMYAKCGSIDSAREIF 263
                                   I AN   L    D  + T+++DMYAKCG+I+ AR +F
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1268

Query: 264  DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             R     + SW+AMI     HG  ++AL  F  M S  V P+R+TF+ +L ACSH+GLV 
Sbjct: 1269 KRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVS 1328

Query: 324  EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            E    F SM   + + P+++HY+C+VD L RAGR+ EA K+I SM  E    ++  LL A
Sbjct: 1329 EAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNA 1388

Query: 384  CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            CR+  + +  +  A+ LL  +P +   YVLLSNVYA A +W++VA  R++M +  +KK P
Sbjct: 1389 CRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDP 1448

Query: 444  GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
            G++W++++NK+H F  GD +H +++ IY  +  + +++   GY+PDT+F L DV+EE K 
Sbjct: 1449 GFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKE 1508

Query: 504  GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             +LY HSEKLAIA+GL+ TP  T +R++KNLRVCGDCH+ IK++S +  R +++RDANRF
Sbjct: 1509 CSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRF 1568

Query: 564  HHFEGGACSCRDYW 577
            HHF  G CSC DYW
Sbjct: 1569 HHFRSGVCSCGDYW 1582



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 169/374 (45%), Gaps = 61/374 (16%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            +Q+H  +V  G    + V N L+ +Y    +++ A  +F  M E D VSW+ M+ G + +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCA-L 984

Query: 137  ADFINC-FETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHDIVLKSGLDIDQF 194
            +    C    F + +R G+  D +T+  V+RAC        +   IH   +K+G+ +D F
Sbjct: 985  SGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF 1044

Query: 195  VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---------------------- 232
            V   L+D+Y+K   +++A  LF      DL +W  M+                       
Sbjct: 1045 VSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG 1104

Query: 233  --ANKFLL------------------------------DVILGTAVIDMYAKCGSIDSAR 260
              AN+  L                              D+ + + V+DMY KCG ++SAR
Sbjct: 1105 ERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESAR 1164

Query: 261  EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             IF+ +   + ++W+ MI+    +GQ + AL  +  M  S+V P+  TF +L+ ACS   
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLT 1224

Query: 321  LVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
             +E+G ++ ++    + A  P V   T +VD+  + G +++A  L +  +  +    W A
Sbjct: 1225 ALEQGRQIHANTVKLNCAFDPFV--MTSLVDMYAKCGNIEDARGLFKRTNTSRIAS-WNA 1281

Query: 380  LLGACRIHKNVDLA 393
            ++     H N + A
Sbjct: 1282 MIVGLAQHGNAEEA 1295



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 154/350 (44%), Gaps = 51/350 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGGFS 134
           ++ HA+I+  G   +  + N L+ +Y+   +L+ A  LF+   +  RD V+W+ ++   +
Sbjct: 646 KRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA 705

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             A   + F  FR   R  +    +TL  V + C           +H   +K GL  D F
Sbjct: 706 DKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVF 763

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V  ALV++YAK   I +AR LFD M  RD+V W VM+   K  +D  L    + ++++  
Sbjct: 764 VAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMM---KAYVDTGLEYEALLLFSEFN 820

Query: 255 S----------------IDSAREIFD-RMRQ-----------------KNVISWSAMIAA 280
                            + S + + + +++Q                  +VI+W+  ++ 
Sbjct: 821 RTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSW 880

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           +   G+  +A+D F  M++SRV  + +TFV +L   +    +E G ++         VR 
Sbjct: 881 FLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHG-----IVVRS 935

Query: 341 DVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
            +        C++++  + G +  A  +   M+ E D   W  ++  C +
Sbjct: 936 GLDQVVSVGNCLINMYVKTGSVSRARTVFWQMN-EVDLVSWNTMISGCAL 984



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 28/201 (13%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP--T 221
           ++R      D+ +G+  H  +L SG   D+F+   L+ MY+KC  +  AR+LFD  P  +
Sbjct: 632 ILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTS 691

Query: 222 RDLVTWTVMIGA------NKFLLDVILGTAVID--------MYAKC--GSIDSAREIFDR 265
           RDLVTW  ++ A      + F L  +L  + +         ++  C   +  SA E    
Sbjct: 692 RDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHG 751

Query: 266 MRQKNVISWSAMIAA-----YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
              K  + W   +A      Y   G+ ++A  LF  M     L + + +  ++ A   TG
Sbjct: 752 YAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGM----GLRDVVLWNVMMKAYVDTG 807

Query: 321 LVEEGLRLFSSMWDDFAVRPD 341
           L  E L LFS  ++   +RPD
Sbjct: 808 LEYEALLLFSE-FNRTGLRPD 827


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/575 (35%), Positives = 326/575 (56%), Gaps = 58/575 (10%)

Query: 60  PKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           P+ + S + +C   +N+   R +H+ +       +  + N L+++Y    A++DA  +F+
Sbjct: 62  PRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFD 121

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           G+  RD VSW+ ++ G+++            + +R   +   +T    ++A        +
Sbjct: 122 GIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGI 181

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----- 231
           G  +H + +K  LD D +V +AL+DMYA+C+ +D A ++FD + +++ V+W  +I     
Sbjct: 182 GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFAR 241

Query: 232 -------------------GANKFL------------------------------LDVIL 242
                              GA  F                               L   +
Sbjct: 242 KGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFV 301

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
              ++ MYAK GS+  AR++FDR+ Q+++++W+ M+ A+  +G GK+A+  F  +    +
Sbjct: 302 ANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGI 361

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             N+ITF+S+L ACSH GLV+EG + F  M  D+ V P++ HY   VDLLGRAG L EAL
Sbjct: 362 QLNQITFLSVLTACSHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLGRAGLLKEAL 420

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             +  M +E    +WGALLGACR+HKN  + + AA  + E  P++ G  VLL N+YA+ G
Sbjct: 421 IFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTG 480

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W D A++R +M    +KK P  +W+E+EN +H F   DSTHP+SEEIYRM   ++ +++
Sbjct: 481 QWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIK 540

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
            AGY+P+T++ L  + E+ +   L  HSEK+A+AF LI  P G  IRIMKN+R+CGDCHS
Sbjct: 541 KAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHS 600

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             ++VS + +R I+VRD NRFHHF  G+CSC DYW
Sbjct: 601 AFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/560 (39%), Positives = 318/560 (56%), Gaps = 63/560 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH+ +V    + N+ VAN LL  Y+ H  + +A  LF  M E D +S++V++   +  
Sbjct: 260 QQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWN 319

Query: 137 ADFINCFETFRE--FIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDID 192
                  E FRE  F R     D    PF  ++    +  ++ MGR IH   + +    +
Sbjct: 320 GRVEESLELFRELQFTR----FDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISE 375

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---------------------- 230
             V  +LVDMYAKC    +A ++F  +  +  V WT +                      
Sbjct: 376 VLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHR 435

Query: 231 --IGANKF------------------------------LLDVILGTAVIDMYAKCGSIDS 258
             IGA+                                L +V  G+A++DMYAKCGSI  
Sbjct: 436 AKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKE 495

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A ++F  M  +N +SW+A+I+AY  +G G  AL  F  M+ S + PN ++F+S+L ACSH
Sbjct: 496 ALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSH 555

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLVEEGL+ F+SM   + + P  +HY  MVD+L R+GR DEA KL+  M  E DE +W 
Sbjct: 556 CGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWS 615

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           ++L +CRIHKN +LA  AA  L   +  ++   YV +SN+YA AG W  V K++  +  R
Sbjct: 616 SILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRER 675

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            ++K+P ++W+E++ K H FS  D++HPQ++EI R L  L +++E  GY PD+   LH+V
Sbjct: 676 GIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALHNV 735

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           DEEVKV +L  HSE++AIAF LI+TP+G+ I +MKNLR C DCH+ IK +S I  R I V
Sbjct: 736 DEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREITV 795

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD++RFHHF  G+CSC+DYW
Sbjct: 796 RDSSRFHHFTDGSCSCKDYW 815



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 172/378 (45%), Gaps = 62/378 (16%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S      ++ ++ QVH  +V  G  + L+V N LL  Y   ++L  A  LF  M E+D
Sbjct: 145 LLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKD 204

Query: 123 SVSWSVMVGGFSKVA---DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +V+++ ++ G+SK     D IN F   ++    G +   +T   V+ A     DI  G+ 
Sbjct: 205 NVTFNALLTGYSKEGFNHDAINLFFKMQDL---GFRPSEFTFAAVLTAGIQMDDIEFGQQ 261

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------- 230
           +H  V+K     + FV  AL+D Y+K   I +AR+LF +MP  D +++ V+         
Sbjct: 262 VHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGR 321

Query: 231 ----------------------------IGANKFLL-----------------DVILGTA 245
                                       I AN   L                 +V++G +
Sbjct: 322 VEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNS 381

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++DMYAKC     A  IF  +  ++ + W+A+I+ Y   G  +  L LF  M  +++  +
Sbjct: 382 LVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGAD 441

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
             T+ S+L AC++   +  G +L S +     +  +V   + +VD+  + G + EAL++ 
Sbjct: 442 SATYASILRACANLASLTLGKQLHSRIIRSGCL-SNVFSGSALVDMYAKCGSIKEALQMF 500

Query: 366 ESMSVEKDEGLWGALLGA 383
           + M V ++   W AL+ A
Sbjct: 501 QEMPV-RNSVSWNALISA 517



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 161/378 (42%), Gaps = 66/378 (17%)

Query: 69  SCRNIFQIRQVHAQ---IVAGGTL------TNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +CR  FQ+ Q H Q   + A   L       N+I  N ++  Y     L+ A +LF+ M 
Sbjct: 42  TCRFNFQV-QTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMV 100

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +R  V+W++++GG+++   F+  F  F +  R GM  D  TL  ++    + + +     
Sbjct: 101 QRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQ 160

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H  V+K G D    VC +L+D Y K + +  A  LF  M  +D VT+  ++        
Sbjct: 161 VHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGF 220

Query: 234 ------------------NKFLLDVIL------------------------------GTA 245
                             ++F    +L                                A
Sbjct: 221 NHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANA 280

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++D Y+K   I  AR++F  M + + IS++ +I    ++G+ +++L+LF  +  +R    
Sbjct: 281 LLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRR 340

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           +  F +LL   +++  +E G ++ S      A+  +V     +VD+  +  +  EA ++ 
Sbjct: 341 QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAI-SEVLVGNSLVDMYAKCDKFGEANRIF 399

Query: 366 ESMSVEKDEGLWGALLGA 383
             ++  +    W AL+  
Sbjct: 400 ADLA-HQSSVPWTALISG 416



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 112/238 (47%), Gaps = 24/238 (10%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            D   + S L +C N+  +   +Q+H++I+  G L+N+   + L+ +YA   ++ +A  +
Sbjct: 440 ADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQM 499

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M  R+SVSW+ ++  +++  D  +   +F + I  G+Q +S +   ++ AC     +
Sbjct: 500 FQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLV 559

Query: 175 VMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIG 232
             G +  + +     L+  +   A++VDM  +    D+A +L  +MP   D + W+ ++ 
Sbjct: 560 EEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILN 619

Query: 233 A-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           +                    K L D     ++ ++YA  G  DS  ++   +R++ +
Sbjct: 620 SCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGI 677



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 22/200 (11%)

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++K+G D +       V  + +   +  AR+LFD+MP +++++   MI            
Sbjct: 33  MIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMG---------- 82

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                 Y K G++ +AR +FD M Q++V++W+ +I  Y  H +  +A +LF  M    ++
Sbjct: 83  ------YLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEA 361
           P+ IT  +LL   +    V E  ++   +     V  D     C  ++D   +   L  A
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHV---VKVGYDSTLMVCNSLLDSYCKTRSLGLA 193

Query: 362 LKLIESMSVEKDEGLWGALL 381
             L + M+ EKD   + ALL
Sbjct: 194 CHLFKHMA-EKDNVTFNALL 212


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 315/557 (56%), Gaps = 58/557 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H   V  G    L V N ++ +Y     L +   +F+GM  RD V+W+ ++ G  +   
Sbjct: 192 MHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQ 251

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA- 197
             +  E F      G+  D  TL  +  A     DI  GR +H  +++ G D+   +   
Sbjct: 252 VASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGN 311

Query: 198 ALVDMYAKCKVID-------------------------------DARQLFDQMPTRDLV- 225
           A+VDMYAK   I+                               +A  ++D M   + + 
Sbjct: 312 AIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLK 371

Query: 226 ----TWTVMIGANKFL-------------------LDVILGTAVIDMYAKCGSIDSAREI 262
               T+  ++ A   L                   LDV +GT VID+YAKCG +D A  +
Sbjct: 372 PIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLL 431

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F++  +++   W+A+I+  G HG G KAL LF  M    + P+ +TFVSLL ACSH GLV
Sbjct: 432 FEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLV 491

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G   F+ M   + ++P  KHY CMVD+ GRAG+LD+A   I +M ++ D  +WGALLG
Sbjct: 492 DQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH NV++ ++A+++L E  P+N G+YVL+SN+YA  G+W  V ++R L+ R+ L+K 
Sbjct: 552 ACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKT 611

Query: 443 PGWTWIEVENKIHQFSVGD--STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           PGW+ IEV+  ++ F  G+  + HPQ EEI R L+ L  K+   GY+PD +F L DV+E+
Sbjct: 612 PGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEED 671

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L +HSE+LAIAFG+I TP  T + I KNLRVCGDCH+  K++S IT R IIVRD+
Sbjct: 672 EKEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDS 731

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSC D+W
Sbjct: 732 NRFHHFKDGYCSCGDFW 748



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 181/395 (45%), Gaps = 60/395 (15%)

Query: 78  QVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           Q+HA  +  G L  +   +  L++ Y     + DA+  F+ M+ RD  +W+ M+ G  + 
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           A        F   +  G+  D+ T+  V+  C    D  +   +H   +K GLD + FVC
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK-------------------FL 237
            A++D+Y K  ++++ R++FD M +RDLVTW  +I  ++                     
Sbjct: 209 NAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVS 268

Query: 238 LDVILGTAVIDMYAKCG------------------------------------SIDSARE 261
            DV+   ++    A+CG                                     I++A+ 
Sbjct: 269 PDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQR 328

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTG 320
           +FD M  ++ +SW+ +I  Y  +G   +A+ ++  M     L P + TFVS+L A SH G
Sbjct: 329 MFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLG 388

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +++G R+  ++     +  DV   TC++DL  + G+LDEA+ L E  +  +  G W A+
Sbjct: 389 ALQQGTRMH-ALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQ-TPRRSTGPWNAV 446

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           +    +H +   A ++  S ++++  +P H   +S
Sbjct: 447 ISGVGVHGHGAKA-LSLFSQMQQEGISPDHVTFVS 480


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 327/583 (56%), Gaps = 58/583 (9%)

Query: 49  GPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           G D +F    D    I++ +  + + + RQVHA +V       + +A +L+ +Y    AL
Sbjct: 36  GADARFH---DYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGAL 92

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            DA  + +GM ER+ VSW+ M+ G+S+        E F   +R G + + +TL  V+ +C
Sbjct: 93  DDARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSC 152

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
              + I     +H +V+K+  +   FV ++L+DMY K   I +AR++FD +P RD V+ T
Sbjct: 153 PVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCT 212

Query: 229 VMI-GANKFLLD------------------------------------------------ 239
            +I G  +  LD                                                
Sbjct: 213 AIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRK 272

Query: 240 -----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                ++L  ++IDMY+KCG +  +R +FD M Q++ ISW+AM+  YG HG G++ + LF
Sbjct: 273 ELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLF 332

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M +  V P+ +T +++L  CSH GLV+EGL +F  +  +      + HY C++DLLGR
Sbjct: 333 RTM-TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGR 391

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           +G+L +AL LIE M  E    +WG+LLGACR+H NV + E+ A+ LL+ +P N G+YV+L
Sbjct: 392 SGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVIL 451

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+YA AG W+DV ++R LM    + K P  +WI ++  IH F   +  HP+ ++I   +
Sbjct: 452 SNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKI 511

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             +   ++ AG++PD +  LHDVD+E K   L  HSEKLAI FGL+ TP G  I++MKNL
Sbjct: 512 KEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNL 571

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+C DCH+F K VS +  R I +RD NRFH  + GAC+C DYW
Sbjct: 572 RICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 324/569 (56%), Gaps = 55/569 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S+ +  R+I  +++V   +V  G   +L V N++L+++     + DA  LF+ M E+D
Sbjct: 123 LVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKD 182

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
             SW  M+GGF    +F   F  F           S T   +IRA      + +GR IH 
Sbjct: 183 MASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHS 242

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
             LK G+  D FV  AL+DMY+KC  I+DA  +FDQMP +  V W  +I +         
Sbjct: 243 CALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEE 302

Query: 234 ---------------NKFLLDVIL------------------------------GTAVID 248
                          + F + +++                               TA++D
Sbjct: 303 ALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVD 362

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            Y+K G ++ A  +F+RMR+KNVISW+A+IA YG HGQG++A+++F  ML   ++PN +T
Sbjct: 363 FYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVT 422

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+++L ACS++GL E G  +F SM  D  V+P   HY CMV+LLGR G LDEA +LI S 
Sbjct: 423 FLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSA 482

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
             +    +W  LL ACR+H+N++L ++AA++L   +P+   +Y++L N+Y ++G+ ++ A
Sbjct: 483 PFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAA 542

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
            +   + R+ L+ +P  TWIEV+ + + F  GD +H Q++EIY  +  +  ++   GY+ 
Sbjct: 543 GVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVE 602

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           +    L DVDEE +    Y HSEKLAIAFGLI TP  T ++I +  RVCGDCHS IK ++
Sbjct: 603 ENKALLPDVDEEEQRILKY-HSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIA 661

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +T R I+VRDA+RFHHF  G+CSC DYW
Sbjct: 662 MVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 133/321 (41%), Gaps = 57/321 (17%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G  +   T   ++ AC   + I   + + + ++ SG + D +V   ++ ++ KC ++ DA
Sbjct: 112 GFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDA 171

Query: 213 RQLFDQMPTRDLVTWTVMIGA-------------------------NKFLLDVILGTAVI 247
           R+LFD+MP +D+ +W  MIG                          ++    +I  +A +
Sbjct: 172 RKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGL 231

Query: 248 --------------------DMYAKC---------GSIDSAREIFDRMRQKNVISWSAMI 278
                               D +  C         GSI+ A  +FD+M +K  + W+++I
Sbjct: 232 GLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSII 291

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           A+Y  HG  ++AL  +  M  S    +  T   ++  C+    +E   +  +++      
Sbjct: 292 ASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRR-GY 350

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
             D+   T +VD   + GR+++A  +   M   K+   W AL+     H   + A    +
Sbjct: 351 DTDIVANTALVDFYSKWGRMEDAWHVFNRMR-RKNVISWNALIAGYGNHGQGEEAVEMFE 409

Query: 399 SLLERQPQNPGHYVLLSNVYA 419
            +L R+   P H   L+ + A
Sbjct: 410 QML-REGMIPNHVTFLAVLSA 429


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/553 (39%), Positives = 320/553 (57%), Gaps = 49/553 (8%)

Query: 27  AIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAG 86
           A+A+  HG E   +  ++     P  +FT +   K  + S LS   + + +++HA I+  
Sbjct: 153 ALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRH 212

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   N+ V   LL +YA   +++ A+++F  M  ++ VSWS M+  F+K    +   E F
Sbjct: 213 GYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELF 272

Query: 147 R--EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           +   F  C    +S T+  +++AC     +  G+LIH  +L+                  
Sbjct: 273 QLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILR------------------ 314

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                   RQL   +P  +                     A+I MY +CG +   + +FD
Sbjct: 315 --------RQLDSILPVLN---------------------ALITMYGRCGEVLMGQRVFD 345

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            M++++V+SW+++I+ YG HG GKKA+ +F  M+   V P+ I+F+++L ACSH GLVEE
Sbjct: 346 NMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEE 405

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G  LF SM   + + P ++HY CMVDLLGRA RL EA+KLIE M  E    +WG+LLG+C
Sbjct: 406 GKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSC 465

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           RIH NV+LAE A+  L E +P+N G+YVLL+++YA A  W +   +  L+  R L+K+PG
Sbjct: 466 RIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPG 525

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            +WIEV+ K++ F   D  +PQ EEI+ +LV LS +++  GY+P TN  L+D+DEE K  
Sbjct: 526 CSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKER 585

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            +  HSEKLA+AFGLI T +G  IRI KNLR+C DCH+  K +S    R I+VRD NRFH
Sbjct: 586 IVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFH 645

Query: 565 HFEGGACSCRDYW 577
           HF  G CSC DYW
Sbjct: 646 HFRDGVCSCGDYW 658



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 150/370 (40%), Gaps = 95/370 (25%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +I +C  +  +  G  +H  ++ SG D D F+   L++MY +   ID A ++FD+ 
Sbjct: 80  TFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDET 139

Query: 220 PTRDLVTWT------VMIGANKFLLDVILG------------------------------ 243
             R +  W        M+G  K LLD+ +                               
Sbjct: 140 RERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCPL 199

Query: 244 ----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                 T ++D+YAK GS+  A  +F  M  KN +SWSAMIA +
Sbjct: 200 RKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACF 259

Query: 282 GYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEG-------------- 325
             +    KAL+LF +M+  +   +PN +T V++L AC+    +E+G              
Sbjct: 260 AKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDS 319

Query: 326 ----LRLFSSMWD------------DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM- 368
               L    +M+             D   + DV  +  ++ + G  G   +A+++ E+M 
Sbjct: 320 ILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMI 379

Query: 369 --SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRW 424
              V      +  +LGAC     V+  ++  +S+L +   +PG  HY  + ++   A R 
Sbjct: 380 HQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRL 439

Query: 425 QDVAKIRDLM 434
            +  K+ + M
Sbjct: 440 GEAIKLIEDM 449



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 94/211 (44%), Gaps = 9/211 (4%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D  L T +I+MY + GSID A ++FD  R++ +  W+A+  A    G GK+ LDL+  M 
Sbjct: 112 DPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMN 171

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF---AVRPDVKHYTCMVDLLGRA 355
                 +R T+  +L AC  + L    LR    +           ++   T ++D+  + 
Sbjct: 172 WIGTPSDRFTYTYVLKACVVSELSVCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKF 231

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVL 413
           G +  A  +  +M   K+   W A++ AC     + +  +    L+  +  N  P    +
Sbjct: 232 GSVSYANSVFCAMPT-KNFVSWSAMI-ACFAKNEMPMKALELFQLMMFEACNSVPNSVTM 289

Query: 414 LSNVYANAG--RWQDVAKIRDLMTRRRLKKI 442
           ++ + A AG    +    I   + RR+L  I
Sbjct: 290 VNMLQACAGLAALEQGKLIHGYILRRQLDSI 320


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/523 (40%), Positives = 314/523 (60%), Gaps = 25/523 (4%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+HA +V  G   N+ V N L+ +Y     L +A  + + M  RD VSW+ +V G ++  
Sbjct: 1147 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNG 1206

Query: 138  DFINCFETFREFIRCGMQLDSYT----LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
             F +  E  +E    G++ D+ T    LP V   C D    V   +   +  KS +  + 
Sbjct: 1207 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVK-EMFMKLANKSLVSWNV 1265

Query: 194  FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG---------- 243
             + A  ++     + +D   Q+ D     D ++   ++ A   L  ++LG          
Sbjct: 1266 MI-AVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK 1324

Query: 244  ---------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                      A+IDMYAKCG ++ ARE+FD+M+ ++V+SW++MI+AYG +G+G+ A+ LF
Sbjct: 1325 RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLF 1384

Query: 295  PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
              M    + P+ I FVS+L ACSH GL++EG   F  M ++  + P ++H+ CMVDLLGR
Sbjct: 1385 SRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGR 1444

Query: 355  AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            AG++DEA   I+ M +E +E +WGALL ACR++ N+ +  +AA  L +  P+  G+YVLL
Sbjct: 1445 AGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLL 1504

Query: 415  SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
            SN+YA AGRW+DV  +R +M  + +KK+PG +  E++N++H F  GD +HPQS++IY  L
Sbjct: 1505 SNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEEL 1564

Query: 475  VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
              L  K++ AGY+P+T+  LHDV+EE K  +L  HSEKLAIAF ++ T  G+ IRI KNL
Sbjct: 1565 DVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNL 1624

Query: 535  RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            RVCGDCH   K +S I  R I +RD NRFHHF  G CSC DYW
Sbjct: 1625 RVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 165/338 (48%), Gaps = 32/338 (9%)

Query: 72   NIFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
            +I  ++++H++I     L +N  +  KL+  YA+         +F+ + +++ V ++VM+
Sbjct: 1039 DIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMI 1098

Query: 131  GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
              +     + +    F+     G+  D YT P V++A    +D+ +G  IH  V++ GLD
Sbjct: 1099 RSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLD 1158

Query: 191  IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVILGT 244
            ++ FV   L+ MY KC  + +A ++ DZMP RD+V+W  ++      G     L+V    
Sbjct: 1159 LNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEM 1218

Query: 245  AVIDMYAKCGSIDS---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
             ++ +    G++ S                +E+F ++  K+++SW+ MIA Y  +    +
Sbjct: 1219 ELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAE 1278

Query: 290  ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHY 345
            A+D+F  M    V P+ I+  S+L AC     +  G R+      ++ VR    P++   
Sbjct: 1279 AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH-----EYVVRKRLQPNLLLE 1333

Query: 346  TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              ++D+  + G L+ A ++ + M   +D   W +++ A
Sbjct: 1334 NALIDMYAKCGCLEYAREVFDQMKF-RDVVSWTSMISA 1370



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 11/201 (5%)

Query: 57   SVDPKFF-ISSLL-SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
            +VDP    I+S+L +C ++  +   R++H  +V      NL++ N L+ +YA    L  A
Sbjct: 1290 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 1349

Query: 112  HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
              +F+ MK RD VSW+ M+  +       +    F      G+  DS     V+ AC   
Sbjct: 1350 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 1409

Query: 172  KDIVMGRLIHDIVL---KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTW 227
              +  GR    ++    K    I+ FVC  +VD+  +   +D+A     QMP   +   W
Sbjct: 1410 GLLDEGRYYFKLMTEECKIVPRIEHFVC--MVDLLGRAGQVDEAYGFIKQMPMEPNERVW 1467

Query: 228  TVMIGANKFLLDVILGTAVID 248
              ++ A +   ++I+G    D
Sbjct: 1468 GALLSACRVYSNMIIGLLAAD 1488


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 323/571 (56%), Gaps = 56/571 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +++ L  R + + ++VHA ++    L    +  +LL  Y     L DA  + + M E++
Sbjct: 57  LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            VSW+ M+  +S+          F E +R   + + +T   V+ +C     + +G+ IH 
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHG 176

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GANKFLLD-- 239
           +++K   D   FV ++L+DMYAK   I++AR++F+ +P RD+V+ T +I G  +  LD  
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 236

Query: 240 ---------------------------------------------------VILGTAVID 248
                                                               +L  ++ID
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 296

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRI 307
           MY+KCG++  A+ +FD M ++  ISW+AM+  Y  HG G++ L+LF +M    RV P+ +
Sbjct: 297 MYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAV 356

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           T +++L  CSH  + + GL ++  M   ++ ++PD +HY C+VD+LGRAGR+DEA + I+
Sbjct: 357 TLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIK 416

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
            M  +   G+ G+LLGACR+H +VD+ E     L+E +P+N G+YV+LSN+YA+AGRW+D
Sbjct: 417 RMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWED 476

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           V  +R +M ++ + K PG +WI+ E  +H F   D THP+ EE+   +  +S K++ AGY
Sbjct: 477 VNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGY 536

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           +PD +  L+DVDEE K   L  HSEKLA+ FGLI T EG  IR+ KNLR+C DCH+F K 
Sbjct: 537 VPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKI 596

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            S +  R + +RD NRFH    G CSC DYW
Sbjct: 597 FSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 138/296 (46%), Gaps = 64/296 (21%)

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           E   E +  G ++  +    ++ AC D++ +  G+ +H  ++K+      ++   L+  Y
Sbjct: 37  EALLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFY 96

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ANKFLLD 239
            KC  ++DAR++ D+MP +++V+WT MI                          N+F   
Sbjct: 97  GKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFA 156

Query: 240 VIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQK 269
            +L                              G++++DMYAK G I+ AREIF+ + ++
Sbjct: 157 TVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPER 216

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +V+S +A+IA Y   G  ++AL++F  + S  + PN +T+ SLL A S   L++ G +  
Sbjct: 217 DVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAH 276

Query: 330 SSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             +     +R ++  Y      ++D+  + G L  A +L ++M  E+    W A+L
Sbjct: 277 CHV-----LRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMP-ERTAISWNAML 326


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 314/567 (55%), Gaps = 56/567 (9%)

Query: 65   SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
            SSL+   NI   RQ+H   +  G + +  VA  L+ +Y+    + +A  LF    + D  
Sbjct: 1016 SSLIDGLNI--SRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLA 1073

Query: 125  SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
             W+ M+ G+    D     E F    + G + D  TL    +AC     +  G+ IH   
Sbjct: 1074 CWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHA 1133

Query: 185  LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------ 232
            +K+G D D  V + ++DMY KC  + +A  +F+ +   D V WT MI             
Sbjct: 1134 IKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQAL 1193

Query: 233  --------------------------------------ANKFLLDVI----LGTAVIDMY 250
                                                  AN   LD +    +GT+++DMY
Sbjct: 1194 RIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMY 1253

Query: 251  AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            AKCG+I+ A  +F +M  +N+  W+AM+     HG  ++A++LF  M S  + P+R++F+
Sbjct: 1254 AKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFI 1313

Query: 311  SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
             +L ACSH GL  E      SM +D+ + P+++HY+C+VD LGRAG + EA K+IE+M  
Sbjct: 1314 GILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPF 1373

Query: 371  EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
            +    +  ALLGACRI  +V+  +  A  L   +P +   YVLLSN+YA A RW DV   
Sbjct: 1374 KASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDA 1433

Query: 431  RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
            R +M R+ +KK PG++WI+V+N +H F V D +HPQ++ IY  +  + + +   GY+PDT
Sbjct: 1434 RKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDT 1493

Query: 491  NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
             F L DV++E K  +LY HSEKLAIA+GLI+TP  T IR++KNLRVCGDCH+ IK++S +
Sbjct: 1494 EFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKV 1553

Query: 551  TRRVIIVRDANRFHHFEGGACSCRDYW 577
              R I++RDANRFHHF  G CSC DYW
Sbjct: 1554 FEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 170/380 (44%), Gaps = 59/380 (15%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            +QVH   V  G  +++ VAN L+ +Y+       A  +FN MK  D +SW+ M+   ++ 
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD-IVMGRLIHDIVLKSGLDIDQFV 195
            +        F + +  G++ D +TL  V+RAC    D + + R IH   LK+G   D FV
Sbjct: 984  SLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFV 1043

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------GANKFLL--------- 238
               L+D+Y+K   +++A  LF      DL  W  M+        G     L         
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGE 1103

Query: 239  ---DVILGTAV-------------------------IDMYAKCGSID---------SARE 261
                + L TA                           D++   G +D         +A  
Sbjct: 1104 KSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGI 1163

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +F+ +   + ++W++MI+    +G   +AL ++  M  SRV+P+  TF +L+ A S    
Sbjct: 1164 VFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA 1223

Query: 322  VEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +E+G +L +++   D    P V   T +VD+  + G +++A +L + M+V ++  LW A+
Sbjct: 1224 LEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNV-RNIALWNAM 1280

Query: 381  LGACRIHKNVDLAEMAAKSL 400
            L     H N + A    KS+
Sbjct: 1281 LVGLAQHGNAEEAVNLFKSM 1300



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 91/174 (52%), Gaps = 5/174 (2%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + +S  N+   +  HA+IV  G+  +  ++N LL +Y+   +L+ A  +F+   ERD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 123 SVSWSVMVGGFSKVADFI--NCFETFREFIRCGMQLDS---YTLPFVIRACRDRKDIVMG 177
            V+W+ ++G ++   D    N  E    F      L S    TL  V++ C +   +   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             +H   +K GL+ D FV  ALV++Y+KC  + DAR LFD M  RD+V W +M+
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMML 800



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 155/343 (45%), Gaps = 52/343 (15%)

Query: 79   VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
            VH   +  G   ++ V+  L+ IY+    + DA  LF+ M+ERD V W++M+ G+ ++  
Sbjct: 749  VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 808

Query: 139  FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV----LKSGLDIDQF 194
                F+ F EF R G++ D +++  ++    +  +   G+ + D V     K  L  D  
Sbjct: 809  EKEAFQLFSEFHRSGLRPDEFSVQLILNGVSE-VNWDEGKWLADQVQAYAAKLSLSDDNP 867

Query: 195  VCAALVDMYAKCKVIDD---ARQLFDQMP----TRDLVTWTVMIGANKFLLDVILGTAV- 246
                     ++C    D   A + F  M       D VT  V++ A     D+ LG  V 
Sbjct: 868  DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVH 927

Query: 247  ------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                              ++MY+K G    ARE+F+ M+  ++ISW++MI++       +
Sbjct: 928  GIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEE 987

Query: 289  KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL----------FSSMWDDFAV 338
            ++++LF  +L   + P+  T  S+L ACS    + +GL +            ++ D F  
Sbjct: 988  ESVNLFIDLLHEGLKPDHFTLASVLRACSS---LIDGLNISRQIHVHALKTGNIADSFVA 1044

Query: 339  RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
                   T ++D+  ++G+++EA  L ++   + D   W A++
Sbjct: 1045 -------TTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 128/313 (40%), Gaps = 57/313 (18%)

Query: 136  VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
              D     E F       +  D+ TL  V+ A     D+ +G+ +H I +KSGLD D  V
Sbjct: 882  AGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSV 941

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
              +LV+MY+K      AR++F+ M   DL++W  MI +                      
Sbjct: 942  ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 1001

Query: 234  --NKFLLDVIL-------------------------------GTAVIDMYAKCGSIDSAR 260
              + F L  +L                                T +ID+Y+K G ++ A 
Sbjct: 1002 KPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAE 1061

Query: 261  EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             +F      ++  W+AM+  Y     GKKAL+LF ++  S    ++IT  +   AC    
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 321  LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            L+++G ++ +          D+   + ++D+  + G +  A  +   +S   D+  W ++
Sbjct: 1122 LLDQGKQIHAHAI-KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA-PDDVAWTSM 1179

Query: 381  LGACRIHKNVDLA 393
            +  C  + N D A
Sbjct: 1180 ISGCVDNGNEDQA 1192



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 48/220 (21%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++R      ++++G+  H  ++ SG   D F+   L+ MY+KC  +  ARQ+FD  P RD
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           LVTW  ++GA                YA   S+DS                         
Sbjct: 687 LVTWNAILGA----------------YA--ASVDSN------------------------ 704

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV--EEGLRLFSSMWDDFAVRPD 341
            G  ++ L LF ++ +S     R+T   +L  C ++G +   EG+  ++       +  D
Sbjct: 705 DGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAI---KIGLEWD 761

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V     +V++  + GR+ +A  L + M  E+D  LW  +L
Sbjct: 762 VFVSGALVNIYSKCGRMRDARLLFDWMR-ERDVVLWNMML 800


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/597 (37%), Positives = 330/597 (55%), Gaps = 58/597 (9%)

Query: 39  PMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98
           P  P +         +  +  P   +S L  C ++ +++Q+ A  +      +L +  KL
Sbjct: 5   PFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKL 64

Query: 99  LYIYALHK---ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           +     +    ++  AH LF  + + D V ++ M  G+S+    +     F + +   + 
Sbjct: 65  INSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLL 124

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D YT P +++AC   K    G+ +H + +K GL+ + +VC  L++MYA C  +D A+++
Sbjct: 125 PDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRV 184

Query: 216 FD-------------------------------QMPTRDL----------VTWTVMIGA- 233
           FD                               Q+  R L          ++   ++GA 
Sbjct: 185 FDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGAL 244

Query: 234 ----------NKFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                      K  LD  V + TA+IDMYAKCGS+D A  +F+ M  ++  +WSAMI AY
Sbjct: 245 DLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAY 304

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HGQG+  + +F  M  ++V P+ ITF+ LLYACSHTGLV+EG R F SM + + + P 
Sbjct: 305 AMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPG 364

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           +KHY CMVDLLGRAG L EA K I+ + ++    LW  LL +C  H N++LA+     +L
Sbjct: 365 IKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQIL 424

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E    + G YV+LSN+ A AG+W+DV  +R LM  +   KIPG + IEV+N +H+F  GD
Sbjct: 425 ELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGD 484

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLI 520
             H  S  ++R L  L ++L+  GY+PDT+  +H D+++E K   L  HSEKLAI+FGL+
Sbjct: 485 GVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLL 544

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            TP GT IR++KNLRVCGDCHS  K +S++  R II+RD  RFHHF+ G CSC DYW
Sbjct: 545 NTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/504 (42%), Positives = 302/504 (59%), Gaps = 52/504 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            +HA I   G   N  V N +L  YA    + L  A  +F+ M ERD VSW+ M+  +++
Sbjct: 73  SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQ 131

Query: 136 VADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                     + + +  G  ++ ++  L  V+ AC     I  G+ IH+ V++ GL+ + 
Sbjct: 132 NGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENV 191

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           +V                                               GT+++DMY+KC
Sbjct: 192 YV-----------------------------------------------GTSIVDMYSKC 204

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ A   F ++++KN++SWSAMI  YG HG+G++AL++F  M  S + PN ITF+S+L
Sbjct: 205 GRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVL 264

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACSH GL++EG   +++M  +F +   V+HY CMVDLLGRAG LDEA  LI+ M V+ D
Sbjct: 265 AACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPD 324

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WGALL ACRIHKNV+LAEM+ K L E    N G+YVLLSN+YA AG W+DV +IR L
Sbjct: 325 AAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLL 384

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           +  RR++K PG++  E++ KI+ F VGD +HPQ  EIY  L  L E+++ AGY+P+T   
Sbjct: 385 VKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSV 444

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD+DEE K   L  HSEKLA+AF L+ +   + I I+KNLRVC DCH+ +K ++ IT R
Sbjct: 445 LHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITER 504

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            II+RD  RFHHF+ G CSCRDYW
Sbjct: 505 EIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 10/195 (5%)

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS- 255
           A++VD  A       + ++ D+  T  L      IG   F  +  +   ++D YAK GS 
Sbjct: 47  ASVVDEAAALVAFSASARVPDRGVTASLHALIAKIG---FERNAGVVNTMLDSYAKGGSR 103

Query: 256 -IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVLPNRITFVSL 312
            ++ AR++FD M +++V+SW++MIA Y  +G   +A+ L+  ML+    +  N +   ++
Sbjct: 104 DLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAV 162

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC+H G ++ G  + + +     +  +V   T +VD+  + GR++ A +    +  EK
Sbjct: 163 LLACAHAGAIQTGKHIHNQVV-RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EK 220

Query: 373 DEGLWGALLGACRIH 387
           +   W A++    +H
Sbjct: 221 NILSWSAMITGYGMH 235



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 86/184 (46%), Gaps = 9/184 (4%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           LL+C +   I   + +H Q+V  G   N+ V   ++ +Y+    +  A   F  +KE++ 
Sbjct: 163 LLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 222

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SWS M+ G+          E F E  R G++ +  T   V+ AC     +  GR  ++ 
Sbjct: 223 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 282

Query: 184 VLKS-GLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLD 239
           + +  G++  ++ + C  +VD+  +   +D+A  L  +M  + D   W  ++ A +   +
Sbjct: 283 MKQEFGIEAGVEHYGC--MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKN 340

Query: 240 VILG 243
           V L 
Sbjct: 341 VELA 344


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 318/556 (57%), Gaps = 56/556 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+ HA  +     T+L V N L+ +Y    ++  +  +F  M  RD +SW+ ++  F++ 
Sbjct: 387 REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQS 446

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           +      E   E  + G+ +DS  +  ++  C   K I + + +H   +++GL +D  + 
Sbjct: 447 SRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDLILE 505

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTW--------------------TVMIGAN-- 234
             L+D+Y +C   D +  LF ++  +D+V+W                    T M  AN  
Sbjct: 506 NRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQ 565

Query: 235 --------------------------------KFLLDVILGTAVIDMYAKCGSIDSAREI 262
                                            F ++  + ++++DMY+ CGS++ A  +
Sbjct: 566 PDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRV 625

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+R + K+V+ W+AMI A G HG GK+A+DLF  ML + + P+ ++F++LLYACSH+ LV
Sbjct: 626 FERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLV 685

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEG      M   + ++P  +HY C+VD+LGR+G+ +EA + I++M ++    +W ALLG
Sbjct: 686 EEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLG 745

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+H+N  LA +AA  LLE +P NPG+Y+L+SNV+A  G+W +  + R  M  R L+K 
Sbjct: 746 ACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKN 805

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEV 501
           P  +WIE+ N IH F+ GD  H  SE I+  L  ++E L    GY+ DT F LHD  EE 
Sbjct: 806 PACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEE 865

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K+  L+ HSE++AIAFGLI+T  G  IRI KNLRVCGDCH F K VS +  R I+VRDAN
Sbjct: 866 KIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDAN 925

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF GG+CSC D+W
Sbjct: 926 RFHHFSGGSCSCEDFW 941



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 160/369 (43%), Gaps = 64/369 (17%)

Query: 77  RQVHAQIVAGGTLT---NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           RQVHA  V  G+L    +  +A KL+++Y     + DA  LFNGM  R   SW+ +VG +
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 134 ---SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
                  + +  +   R     G   D  TL  V++AC    D   G  +H + +K GLD
Sbjct: 137 LSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLD 196

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIG---------------- 232
               V  AL+ MYAKC ++D A ++F+  Q   RD+ +W  ++                 
Sbjct: 197 KSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFR 256

Query: 233 ---ANKFLLDVILGTAVID----------------------------------MYAKCGS 255
              +  F ++     AV+                                   MYAK G 
Sbjct: 257 GMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGR 316

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +DSA  +F ++ +K+ ISW++M++ Y  +    +A+D F  ML     P+    VSL  A
Sbjct: 317 VDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSA 376

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
             H   +  G R F +      +  D++    ++D+  + G ++ + K+ ESM + +D  
Sbjct: 377 LGHLSRLNNG-REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGI-RDHI 434

Query: 376 LWGALLGAC 384
            W  +L AC
Sbjct: 435 SWTTIL-AC 442



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 178/397 (44%), Gaps = 59/397 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++HA ++  G+  N I  N LL +YA +  +  A  +F  + E+D +SW+ M+  + + 
Sbjct: 287 RELHAALLKCGSELN-IQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQN 345

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           + +    + F E ++ G Q D   +  +  A      +  GR  H   +K  L  D  V 
Sbjct: 346 SFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVG 405

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWT---------------------------- 228
             L+DMY KC  I+ + ++F+ M  RD ++WT                            
Sbjct: 406 NTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIM 465

Query: 229 ---VMIGA----------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
              +MIG+                         LLD+IL   +ID+Y +CG  D +  +F
Sbjct: 466 VDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLF 525

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
            R+ +K+++SW++MI     +G+   A+ LF  M  + + P+ +  VS+L A +    + 
Sbjct: 526 QRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLT 585

Query: 324 EGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +G ++   +   +F +   V   + +VD+    G ++ A+++ E     KD  LW A++ 
Sbjct: 586 KGKQVHGFLIRRNFPIEGPV--VSSLVDMYSGCGSMNYAIRVFERAKC-KDVVLWTAMIN 642

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           A  +H +   A    K +L+     P H   L+ +YA
Sbjct: 643 ATGMHGHGKQAIDLFKRMLQ-TGLTPDHVSFLALLYA 678


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/537 (39%), Positives = 322/537 (59%), Gaps = 35/537 (6%)

Query: 69  SCRNIFQIR-QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           SC +  +I  Q+H  +   G   NL V N L+ +Y     L +A  + + M+ +D VSW+
Sbjct: 144 SCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWN 203

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR-----------------D 170
            MV G+++   F +  +  RE      + D+ T+  ++ A                   +
Sbjct: 204 SMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLE 263

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY---AKCKVIDDARQLFDQM-PTRDLVT 226
           +K +V   ++  + +K+ +          VD+Y    KC+V  DA      +    DL  
Sbjct: 264 KKSLVSWNVMISVYMKNSMP------GKSVDLYLQMGKCEVEPDAITCASVLRACGDLSA 317

Query: 227 WTV------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
             +       +   K   +++L  ++IDMYA+CG ++ A+ +FDRM+ ++V SW+++I+A
Sbjct: 318 LLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISA 377

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           YG  GQG  A+ LF  M +S   P+ I FV++L ACSH+GL+ EG   F  M DD+ + P
Sbjct: 378 YGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITP 437

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            ++H+ C+VDLLGR+GR+DEA  +I+ M ++ +E +WGALL +CR++ N+D+  +AA  L
Sbjct: 438 IIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKL 497

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           L+  P+  G+YVLLSN+YA AGRW +V  IR LM RRR++K+PG + +E+ N++H F  G
Sbjct: 498 LQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAG 557

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D+ HPQS+EIY  L  L  K++  GY+P T+  LHDV+EE K  +L  HSEKLAI F ++
Sbjct: 558 DTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAIVFAIL 617

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            T E + IRI KNLRVCGDCH   K +S I +R I++RD NRFHHF+ G CSC DYW
Sbjct: 618 NTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 157/341 (46%), Gaps = 39/341 (11%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           +I  ++ VH+++       N  +  KL+  YA       A  +F+ + ER+ + ++VM+ 
Sbjct: 47  DIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIR 106

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +     + +    FR+ +  G   D YT P V++AC    ++ +G  +H  V K GLD+
Sbjct: 107 SYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDL 166

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDVILGTAVIDM 249
           + FV   L+ +Y KC  + +AR + D+M ++D+V+W  M+   A     D        D 
Sbjct: 167 NLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFD--------DA 218

Query: 250 YAKCGSIDSAR---------------------------EIFDRMRQKNVISWSAMIAAYG 282
              C  +D  R                           E+F  + +K+++SW+ MI+ Y 
Sbjct: 219 LDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYM 278

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            +    K++DL+  M    V P+ IT  S+L AC     +  G R+   + +   + P++
Sbjct: 279 KNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYV-ERKKLCPNM 337

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
                ++D+  R G L++A ++ + M   +D   W +L+ A
Sbjct: 338 LLENSLIDMYARCGCLEDAKRVFDRMKF-RDVASWTSLISA 377


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 336/616 (54%), Gaps = 103/616 (16%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERD 122
           SS   C+ +  ++Q+HAQ++    + + + A +LL   A+  H+ L  A  +F  M   +
Sbjct: 16  SSFFPCKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPN 75

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
             S++ ++   S+  D  +    F E +  C ++ + +T P V +AC   + +  GR +H
Sbjct: 76  CFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVH 135

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDA----------------------------- 212
            + +K GLD D+FV + +V MY  C V++DA                             
Sbjct: 136 GLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVL 195

Query: 213 -----------------RQLFDQMPTRDLVTWTVM------------------------- 230
                            R LFD+MP R +V+W VM                         
Sbjct: 196 WNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEV 255

Query: 231 ----------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
                           +GA             N   +D +LG+A+IDMYAKCGSI+ A +
Sbjct: 256 PPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQ 315

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+ + ++NV++WS +IA    HG+ K  LD F  M  + V+P+ +T++ LL ACSH GL
Sbjct: 316 VFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGL 375

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V EG   F  M     + P ++HY CMVDLLGRAG L+E+ +LI +M ++ D+ +W ALL
Sbjct: 376 VNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALL 435

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC++H NV++ +  A+ L+E  P + G YV LSN+YA+ G W+ VAK+R +M    ++K
Sbjct: 436 GACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRK 495

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +WIE++  IH+F V D +HP+S++I+ ML  +S  L L GY P+T   L ++DEE 
Sbjct: 496 DPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEED 555

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K  +L  HSEK+AIAFGLI+T   T +RI KNLR+C DCHS IK +S I +R IIVRD  
Sbjct: 556 KESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRK 615

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G+CSC DYW
Sbjct: 616 RFHHFVNGSCSCMDYW 631


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/487 (42%), Positives = 292/487 (59%), Gaps = 48/487 (9%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           ++  N ++  +  +  +  A  +F+ ++E+D  +WS M+  + +    +     F    R
Sbjct: 264 VVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQR 323

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
            G+Q +  +L  V+  C     +  GR +H  ++KS  D                     
Sbjct: 324 EGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDS-------------------- 363

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                                      DV + + +I MY KCG +  AR+IFDR   K++
Sbjct: 364 ---------------------------DVFVASVLITMYVKCGDLVKARQIFDRFSPKDI 396

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           + W+++I  Y  HG  ++AL +F  M SS +  + +TFV +L ACS+TG V+EGL +F S
Sbjct: 397 VMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFES 456

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   + V P  +HY CMVDLLGRAG +++A+ LI+ M VE D  +WGALLGACR H N++
Sbjct: 457 MKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMN 516

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE+AAK LL+ +P+N G Y+LLSN+YA+ GRW DVA++R  M  +++ K PG +WIEVE
Sbjct: 517 LAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVE 576

Query: 452 NKIHQFSVGDST-HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            ++H F+ G ST HP+   I +ML  L   L  AGY PD++F LHDVDEE KV +L  HS
Sbjct: 577 KRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHS 636

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LA+AFGL+  PEG  IR+MKNLRVCGDCHS IK ++ IT R II+RDANRFHHF+ G 
Sbjct: 637 ERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGF 696

Query: 571 CSCRDYW 577
           CSCRDYW
Sbjct: 697 CSCRDYW 703



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 138/306 (45%), Gaps = 74/306 (24%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK---VADFINCFETFREFIRC 152
           N ++  Y  +    +A  LF+ M ER++VSW+ ++ G+ K   V++    F+T  E    
Sbjct: 51  NSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPE---- 106

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
              + S+T                                     A+V  Y +  ++ +A
Sbjct: 107 -RNVVSWT-------------------------------------AMVRGYVQEGLVSEA 128

Query: 213 RQLFDQMPTRDLVTWTVMIGA---------NKFLLD------VILGTAVIDMYAKCGSID 257
             LF QMP +++V+WTVM+G           + L D      V+  T +I  Y + G + 
Sbjct: 129 ETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLA 188

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            ARE+FD M ++NVISW+ MI+ Y  +GQ   A  LF +M       N +++ ++L   +
Sbjct: 189 EARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYT 244

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESMSVEKDEG 375
             G +EE   LF +M       P      C  M+   G+ G + +A ++ + +  EKD+G
Sbjct: 245 QGGRIEEASELFDAM-------PVKAVVACNAMILGFGQNGEVAKARQVFDQIR-EKDDG 296

Query: 376 LWGALL 381
            W A++
Sbjct: 297 TWSAMI 302



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 30/248 (12%)

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------NKFLLD------VILGTAVI 247
           YA+   I+ AR++FD+MP + +V+W  M+            ++L D       +    +I
Sbjct: 26  YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLI 85

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
             Y K   +  AR+ FD M ++NV+SW+AM+  Y   G   +A  LF  M       N +
Sbjct: 86  SGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK----NVV 141

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           ++  +L        ++E   LF     D     DV   T M+    + GRL EA +L + 
Sbjct: 142 SWTVMLGGLIQVRRIDEARGLF-----DIMPVKDVVARTNMISGYCQEGRLAEARELFDE 196

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQD 426
           M   ++   W  ++     +  VD+    A+ L E  P+ N   +  +   Y   GR ++
Sbjct: 197 MP-RRNVISWTTMISGYVQNGQVDV----ARKLFEVMPEKNEVSWTAMLMGYTQGGRIEE 251

Query: 427 VAKIRDLM 434
            +++ D M
Sbjct: 252 ASELFDAM 259



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            IS L  C ++  +   RQVHA++V     +++ VA+ L+ +Y     L  A  +F+   
Sbjct: 333 LISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFS 392

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D V W+ ++ G+++        + F E    GM  D  T   V+ AC     +  G  
Sbjct: 393 PKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLE 452

Query: 180 IHDIVLKSGL---DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
           I + +    L     + + C  +VD+  +  +++DA  L  +MP   D + W  ++GA
Sbjct: 453 IFESMKSKYLVEPKTEHYAC--MVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGA 508



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 26/205 (12%)

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I  YA+ G I+SAR +FD M  K ++SW++M+A Y  + + ++A  LF  M       N 
Sbjct: 23  IARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER----NT 78

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           +++  L+       +V E  + F +M +      +V  +T MV    + G + EA  L  
Sbjct: 79  VSWNGLISGYVKNRMVSEARKAFDTMPER-----NVVSWTAMVRGYVQEGLVSEAETLFW 133

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAE-----MAAKSLLERQPQNPGHYVLLSNVYANA 421
            M  EK+   W  +LG     + +D A      M  K ++ R     G        Y   
Sbjct: 134 QMP-EKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISG--------YCQE 184

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWT 446
           GR  +  ++ D M RR    +  WT
Sbjct: 185 GRLAEARELFDEMPRR---NVISWT 206


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/505 (40%), Positives = 313/505 (61%), Gaps = 20/505 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   V  G + NL V + L+ +YA   ++ +A  +F+ M  RD VSW+ ++  + K 
Sbjct: 285 KEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKN 344

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRAC----RDRKDIVMGRLIHDIVLKSGLDID 192
            ++   F  F +  R G++ D  T   VI  C    R  + + M R +     K G   +
Sbjct: 345 KEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQ----KMGFKPN 400

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           +   ++++     C   ++ R +  ++       W V         D+   TA++ MYAK
Sbjct: 401 EITISSIL---PACSFSENLR-MGKEIHCYVFRHWKVG--------DLTSTTALLYMYAK 448

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG ++ +R +FD MR+K+V++W+ MI A   HG GK+AL LF  ML SRV PN +TF  +
Sbjct: 449 CGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGV 508

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L  CSH+ LVEEG+++F+SM  D  V PD  HY+C+VD+  RAGRL+EA K I+ M +E 
Sbjct: 509 LSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEP 568

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
               WGALL ACR++KNV+LA+++AK L E +P NPG+YV L N+   A  W + +++R 
Sbjct: 569 TASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRI 628

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
           LM  R + K PG +W++V NK+H F VGD ++ +S++IY  L  L EK+++AGY PDT++
Sbjct: 629 LMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDY 688

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            L D+D+E K  +L +HSEKLA+AFG++     + IR+ KNLR+CGDCH+ IK++S +  
Sbjct: 689 VLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVG 748

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
            +I+VRD+ RFHHF+ G CSC+D W
Sbjct: 749 VIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 178/378 (47%), Gaps = 34/378 (8%)

Query: 21  SSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCR---NIFQ 75
           ++ +T   AL  HG     +     +Q        R + P    F+++  +C    +  +
Sbjct: 130 TTCSTLISALTTHGLSNEAIKIYSSLQ-------ERGIKPDMPVFLAAAKACAVSGDALR 182

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +++VH      G ++++ V N L++ Y   K +  A  +F+ +  RD VSW+ +   + K
Sbjct: 183 VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 242

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   + FRE    G++ +  T+  ++ AC + KD+  G+ IH   ++ G+ ++ FV
Sbjct: 243 CGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFV 302

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           C+ALV +YAKC  + +AR +FD MP RD+V+W                  V+  Y K   
Sbjct: 303 CSALVSLYAKCLSVREARMVFDLMPHRDVVSW----------------NGVLTAYFKNKE 346

Query: 256 IDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            +    +F +M +  V     +W+A+I     +G+ ++A+++F  M      PN IT  S
Sbjct: 347 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISS 406

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +L ACS +  +  G  +   ++  + V  D+   T ++ +  + G L+ +  + + M   
Sbjct: 407 ILPACSFSENLRMGKEIHCYVFRHWKV-GDLTSTTALLYMYAKCGDLNLSRNVFDMMR-R 464

Query: 372 KDEGLWGALLGACRIHKN 389
           KD   W  ++ A  +H N
Sbjct: 465 KDVVAWNTMIIANAMHGN 482



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 54/276 (19%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + + D  + S ++   +         + +      G++ D        +AC  
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 176

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D +  + +HD   + G+  D FV  AL+  Y KCK ++ AR++FD +  RD+V+WT +
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236

Query: 231 ------------------------IGANKFLLDVIL----------------GTAV---- 246
                                   +  N   +  IL                G AV    
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 296

Query: 247 ----------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                     + +YAKC S+  AR +FD M  ++V+SW+ ++ AY  + + +K   LF  
Sbjct: 297 VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLK 356

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           M    V  +  T+ +++  C   G  EE + +F  M
Sbjct: 357 MSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 392



 Score = 42.0 bits (97), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG  +I +    G  + AR++FD + Q +  + S +I+A   HG   +A+ ++  +    
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 302 VLPNRITFVSLLYACSHTG 320
           + P+   F++   AC+ +G
Sbjct: 160 IKPDMPVFLAAAKACAVSG 178


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/491 (42%), Positives = 298/491 (60%), Gaps = 54/491 (10%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS---KVADFINCFETF 146
           +++ V N L+ +Y+  K +  A  +FN +  R  VSW+ M+ G++   +V++ +NCF   
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           +     GM+ DS+T+  VI A  +       + IH ++++S LD + FV           
Sbjct: 442 KSL---GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVT---------- 488

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
                                                TA++DMY+KCG+I  AR++FD +
Sbjct: 489 -------------------------------------TALVDMYSKCGAIHMARKLFDMI 511

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
             ++VI+W+AMI  YG HG G+ ALDLF  M    V PN IT++S++ ACSH+GLV+EGL
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           R F SM  D+ + P + HY  MVDLLGRAGR+ EA   IE+M +     ++GA  GAC+I
Sbjct: 572 RHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKI 631

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           HKN+++ E AAK L E  P   G++VLL+N+YA+  +W  VA++R  M ++ LKK PG +
Sbjct: 632 HKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCS 691

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
            +E+ N++H F  G +THPQS+ IY  L  L  +++ AGY+PDTN  L DV+++V+   L
Sbjct: 692 VVELRNEVHSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLL 750

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
            SHSEKLAIAFGL+ T  GT I + KNLRVCGDCH+  K++S +T R IIVRD  RFHHF
Sbjct: 751 NSHSEKLAIAFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHF 810

Query: 567 EGGACSCRDYW 577
           + G CSC DYW
Sbjct: 811 KNGICSCGDYW 821



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 169/359 (47%), Gaps = 65/359 (18%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C ++ ++ Q+   ++  G     +   KL+ +++ + ++ +A  +F  + ++    +  M
Sbjct: 59  CTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTM 118

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIV 184
           + G++K +      ET   F+ C M+ D      Y   ++++ C D  D+  G+ IH  +
Sbjct: 119 LKGYAKNSSL----ETALAFL-CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQL 173

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLL 238
           + +    + F    +V+MYAKC+ IDDA ++FD+MP RDLV+W  +I      G  K  L
Sbjct: 174 ITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 239 DVIL------------------------------------------------GTAVIDMY 250
           +++L                                                 TA+ DMY
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           +KCGS+++AR IFD M QK V+SW++M+  Y  +G+ +KA+ +F  ML   + P  +T +
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
             L+AC+  G +E G +      D   +  D+     ++ +  +  R+D A  +  +++
Sbjct: 354 EALHACADLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLN 411



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 164/370 (44%), Gaps = 66/370 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H Q++      N+     ++ +YA  + + DA+ +F+ M ERD VSW+ ++ GFS+ 
Sbjct: 167 KEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQN 226

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E        G + DS TL  V+ A  D   +++G+ IH   +++G      + 
Sbjct: 227 GFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNIS 286

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL DMY+KC  ++ AR +FD M  + +V+W  M+                         
Sbjct: 287 TALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGID 346

Query: 234 -------------------------NKFLLDVILGT------AVIDMYAKCGSIDSAREI 262
                                    +KF+  + LG+      ++I MY+KC  +D A +I
Sbjct: 347 PTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDI 406

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ +  +  +SW+AMI  Y  +G+  +AL+ F  M S  + P+  T VS++ A +   + 
Sbjct: 407 FNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVT 466

Query: 323 E-----EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
                  GL + S +  +  V       T +VD+  + G +  A KL + +S ++    W
Sbjct: 467 RHAKWIHGLIIRSCLDKNIFVT------TALVDMYSKCGAIHMARKLFDMIS-DRHVITW 519

Query: 378 GALLGACRIH 387
            A++     H
Sbjct: 520 NAMIDGYGTH 529



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 64/144 (44%), Gaps = 4/144 (2%)

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           +  T ++ +++K GSI+ A  +F+ +  K    +  M+  Y  +   + AL     M   
Sbjct: 82  LFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            V P    F  LL  C     ++ G  +   +  + FA   +V   T +V++  +  ++D
Sbjct: 142 DVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAA--NVFAMTGVVNMYAKCRQID 199

Query: 360 EALKLIESMSVEKDEGLWGALLGA 383
           +A K+ + M  E+D   W  ++  
Sbjct: 200 DAYKMFDRMP-ERDLVSWNTIIAG 222


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/579 (36%), Positives = 324/579 (55%), Gaps = 57/579 (9%)

Query: 56  RSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           R  D   F S L SC  +  +R    VH  IV  G   +L   N L+ +Y+    +    
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVR 160

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F  M  +D VS++ ++ G+++   + +     RE     ++ D++TL  V+    +  
Sbjct: 161 KVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYV 220

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD--------- 223
           D++ G+ IH  V++ G+D D ++ ++LVDMYAK   I+D+ ++F  +  RD         
Sbjct: 221 DVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVA 280

Query: 224 -----------------LVTWTVMIGA----------------------------NKFLL 238
                            +V+  V  GA                              F  
Sbjct: 281 GYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR 340

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           ++ + +A++DMY+KCG+I +AR+IFDRM   + +SW+A+I  +  HG G +A+ LF  M 
Sbjct: 341 NIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMK 400

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              V PN++ FV++L ACSH GLV+E    F+SM   + +  +++HY  + DLLGRAG+L
Sbjct: 401 RQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 460

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA   I  M VE    +W  LL +C +HKN++LAE  A+ +     +N G YVL+ N+Y
Sbjct: 461 EEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMY 520

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A+ GRW+++AK+R  + ++ L+K P  +WIE++NK H F  GD +HP  + I   L  + 
Sbjct: 521 ASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVM 580

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E++E  GY+ DT+  LHDVDEE K   L+ HSE+LA+AFG+I T  GT IR+ KN+R+C 
Sbjct: 581 EQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICT 640

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH  IK +S IT R IIVRD +RFHHF  G+CSC DYW
Sbjct: 641 DCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 172/367 (46%), Gaps = 57/367 (15%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +Q+HAQ +   +L++   A+ ++ IY   K L +A  +F  ++    ++W  ++  F+
Sbjct: 23  QAKQLHAQFIRTQSLSH-TSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFT 81

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             + F     +F E    G   D    P V+++C    D+  G  +H  +++ G+D D +
Sbjct: 82  DQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
              AL++MY+K   ID  R++F+ MP +D+V++  +I                       
Sbjct: 142 TGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSD 201

Query: 234 ---NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAR 260
              + F L  +L                              G++++DMYAK   I+ + 
Sbjct: 202 LKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 261

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F  + +++ ISW++++A Y  +G+  +AL LF  M+S++V P  + F S++ AC+H  
Sbjct: 262 RVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLA 321

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +  G +L   +      R ++   + +VD+  + G +  A K+ + M++  DE  W A+
Sbjct: 322 TLHLGKQLHGYVLRGGFGR-NIFIASALVDMYSKCGNIQAARKIFDRMNLH-DEVSWTAI 379

Query: 381 LGACRIH 387
           +    +H
Sbjct: 380 IMGHALH 386


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 319/561 (56%), Gaps = 55/561 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R + Q R +HA I +     +L++ N +L +YA   +L +A  LF+ M  +D VSW+V++
Sbjct: 119 RKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLI 178

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            G+S+          F + +  G Q + +TL  +++A         GR +H   LK G D
Sbjct: 179 SGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYD 238

Query: 191 IDQFVCAALVDMYAKCKVIDDAR-------------------------------QLFDQM 219
           ++  V ++L+DMYA+   + +A+                               +LF QM
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM 298

Query: 220 ------PTRDLVTWTVMIGANKFLLD-----------------VILGTAVIDMYAKCGSI 256
                 PT    +      A+   L+                   +G  +IDMYAK GSI
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 358

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             A+++F R+ +++++SW+++I+ Y  HG G +AL LF  ML ++V PN ITF+S+L AC
Sbjct: 359 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 418

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH+GL++EG   F  M     +   V H+  +VDLLGRAGRL+EA K IE M ++    +
Sbjct: 419 SHSGLLDEGQYYFELM-KKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAV 477

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALLG+CR+HKN+DL   AA+ + E  P + G +VLLSN+YA+AGR  D AK+R +M  
Sbjct: 478 WGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKE 537

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             +KK P  +W+E+EN++H F   D +HP  EEI RM   +S K++  GY+PDT+  L  
Sbjct: 538 SGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEKISGKIKEIGYVPDTSHVLFF 597

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++++ +   L  HSEKLA+AF ++ TP G  IRI KN+R+CGDCHS  K  S +  R II
Sbjct: 598 MNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRICGDCHSAFKFASRVLGREII 657

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF  G CSCRDYW
Sbjct: 658 VRDTNRFHHFLHGMCSCRDYW 678



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 191/463 (41%), Gaps = 122/463 (26%)

Query: 148 EFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           + I CG      TL   ++  C   + +  GR IH  +  S  + D  +   +++MYAKC
Sbjct: 94  DLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKC 153

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL 242
             +++A+ LFD+MPT+D+V+WTV+I                          N+F L  +L
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLL 213

Query: 243 ------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                         G++++DMYA+   +  A+ IF+ +  KNV+
Sbjct: 214 KASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVV 273

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG------- 325
           SW+A+IA +   G+G+  + LF  ML     P   T+ S+  AC+ +G +E+G       
Sbjct: 274 SWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHV 333

Query: 326 --------LRLFSSMWDDFA---------------VRPDVKHYTCMVDLLGRAGRLDEAL 362
                     + +++ D +A               V+ D+  +  ++    + G   EAL
Sbjct: 334 IKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 393

Query: 363 KLIESM---SVEKDEGLWGALLGACRIHKNVDLA----EMAAKSLLERQPQNPGHYVLLS 415
           +L E M    V+ +E  + ++L AC     +D      E+  K  +E Q     H+V + 
Sbjct: 394 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQ---VAHHVTVV 450

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           ++   AGR  +  K  + M  +    +  W  +    ++H+                   
Sbjct: 451 DLLGRAGRLNEANKFIEEMPIKPTAAV--WGALLGSCRMHK------------------- 489

Query: 476 TLSEKLELAGYIPDTNFEL--HDVDEEVKVGNLYSHSEKLAIA 516
                ++L  Y  +  FEL  HD    V + N+Y+ + +L+ A
Sbjct: 490 ----NMDLGVYAAEQIFELDPHDSGPHVLLSNIYASAGRLSDA 528



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/222 (18%), Positives = 98/222 (44%), Gaps = 19/222 (8%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S  ++ Q + VHA ++  G      + N L+ +YA   ++ DA  +F  + ++D VSW+ 
Sbjct: 319 SSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNS 378

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           ++ G+++        + F + ++  +Q +  T   V+ AC     +  G+   +++ K  
Sbjct: 379 IISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHK 438

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGANKFLLDVILGTAVI 247
           ++        +VD+  +   +++A +  ++MP +     W  ++G+ +   ++ LG    
Sbjct: 439 IEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAA 498

Query: 248 D------------------MYAKCGSIDSAREIFDRMRQKNV 271
           +                  +YA  G +  A ++   M++  V
Sbjct: 499 EQIFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGV 540


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 310/556 (55%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H   V       ++V   LL +YA  + L  A  +F+ M  R+ VSWS M+GG+   
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 137 ADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                  E F + I +  M     TL  V+RAC    D+  GR +H  ++K G  +D  +
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILL 349

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW---------------------------- 227
              L+ MYAKC VIDDA + FD+M  +D V++                            
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 228 ----TVMIGA----------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
               T M+G                         F  D ++  A+IDMY+KCG I  ARE
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+RM + +++SW+AMI  YG HG G +AL LF  +L+  + P+ ITF+ LL +CSH+GL
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V EG   F +M  DF++ P ++H  CMVD+LGRAG +DEA   I +M  E D  +W ALL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACRIHKN++L E  +K +    P++ G++VLLSN+Y+ AGRW D A IR       LKK
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           IPG +WIE+   +H F  GD +H Q  +I R L  L  +++  GY  + +F   DV+EE 
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEE 709

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLAIAFG++    G  I + KNLRVCGDCH+ IK ++ IT+R I VRDAN
Sbjct: 710 KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDAN 769

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G C+C D+W
Sbjct: 770 RFHHFKNGTCNCGDFW 785



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 165/383 (43%), Gaps = 68/383 (17%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C  +  I    ++H+     G  +++ V   L+  YA    L +A  LF+ M  RD 
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           V+W+ M+ G S      +  +   +    G+  +S T+  V+    + K +  G+ +H  
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
            ++   D    V   L+DMYAKC+ +  AR++FD M  R+ V+W+ MIG           
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEA 295

Query: 234 ----NKFLLD-------VILGT-------------------------AVID--------- 248
               ++ +L        V LG+                         +V+D         
Sbjct: 296 LELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLS 355

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAKCG ID A   FD M  K+ +S+SA+++    +G    AL +F MM  S + P+  T
Sbjct: 356 MYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTT 415

Query: 309 FVSLLYACSHTGLVEEGLRLFSS----MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            + +L ACSH   ++ G   F S    +   FA   D      ++D+  + G++  A ++
Sbjct: 416 MLGVLPACSHLAALQHG---FCSHGYLIVRGFAT--DTLICNALIDMYSKCGKISFAREV 470

Query: 365 IESMSVEKDEGLWGALLGACRIH 387
              M    D   W A++    IH
Sbjct: 471 FNRMD-RHDIVSWNAMIIGYGIH 492



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 16/218 (7%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + +  +++ + +++H   +   +  +  V +KL  +Y     +  A  LF+ +    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            + W+ ++  ++    F    + +   +  G++ + YT PFV++AC     I  G  IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
                GL+ D FVC ALVD YAKC ++ +A++LF  M  RD+V W  MI           
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI----------- 182

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
             A   +Y  C   D A ++  +M+++ +   S+ I  
Sbjct: 183 --AGCSLYGLC---DDAVQLIMQMQEEGICPNSSTIVG 215



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           +Y  C  +  AR +FD +   +VI W+ +I AY ++G    A+DL+  ML   V PN+ T
Sbjct: 52  LYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYT 111

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +  +L ACS    +E+G+ + S     F +  DV   T +VD   + G L EA +L  SM
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHA-KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           S  +D   W A++  C ++    L + A + +++ Q + 
Sbjct: 171 S-HRDVVAWNAMIAGCSLY---GLCDDAVQLIMQMQEEG 205


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 331/561 (59%), Gaps = 59/561 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q++QVHA ++      +  +  KL+ +    +A+   H LF  +   D   ++ ++   S
Sbjct: 24  QLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTS 83

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K+   ++C   +R  +   +   +YT   VI++C D   + +G+ +H   + SG  +D +
Sbjct: 84  KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTY 143

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-------------------------------- 222
           V AALV  Y+KC  ++ ARQ+FD+MP +                                
Sbjct: 144 VQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESG 203

Query: 223 ---DLVTWTVMIGA-------------NKFLL------DVILGTAVIDMYAKCGSIDSAR 260
              D  T+  ++ A             +++++      +V LGTA+I++Y++CG +  AR
Sbjct: 204 FEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAR 263

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYACSHT 319
           E+FD+M++ NV +W+AMI+AYG HG GK+A+DLF  M      +PN +TFV++L AC+H 
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHA 323

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE---GL 376
           GLVE+G  ++  M + + + P V+H+ C+VD+LGRAG LDEA + I+ +    +     L
Sbjct: 324 GLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPAL 383

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W A+LGAC++H+N DL    AK L+  +P+NPGH+V+LSN+YA +G+  +V+ IRD M R
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMR 443

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             L+K  G++ IEVENK + FS+GD +H ++ EIYR L TL  + +  GY P +   +H 
Sbjct: 444 NNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+EE K   L  HSEKLA+AFGL+ T +   I ++KNLR+C DCHS  K++S ++ R II
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKTVDSA-ITVVKNLRICEDCHSAFKYISIVSNRQII 562

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD  RFHHF+ G+CSC DYW
Sbjct: 563 VRDKLRFHHFQNGSCSCLDYW 583


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/645 (36%), Positives = 339/645 (52%), Gaps = 125/645 (19%)

Query: 58  VDPKFF-----ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--------- 103
           ++P  F     ++S+ + R +   ++VH+ IV  G   N+ V+N LL +YA         
Sbjct: 142 IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK 201

Query: 104 -------------------LHKALTD---AHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
                              LH  +     A A F  M ERD V+W+ M+ GF++    + 
Sbjct: 202 FVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLR 261

Query: 142 CFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
             + F + +R  +   D +TL  V+ AC + + + +G+ IH  ++ +G DI   V  AL+
Sbjct: 262 ALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321

Query: 201 DMYAKCKVID---------------------------------DARQLFDQMPTRDLVTW 227
            MY++C  ++                                  A+ +F  +  RD+V W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAW 381

Query: 228 TV--------------------MIGA----NKFLL------------------------- 238
           T                     M+G     N + L                         
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVK 441

Query: 239 -----DVILGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALD 292
                 V +  A+I MYAK G+I SA   FD +R +++ +SW++MI A   HG  ++AL+
Sbjct: 442 SGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALE 501

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  ML   + P+ IT+V +  AC+H GLV +G + F  M D   + P + HY CMVDL 
Sbjct: 502 LFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAG L EA + IE M +E D   WG+LL ACR+HKN+DL ++AA+ LL  +P+N G Y 
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYS 621

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
            L+N+Y+  G+W++ AKIR  M   R+KK  G++WIEV++K+H F V D THP+  EIY 
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYM 681

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  + ++++  GY+PDT   LHD++EEVK   L  HSEKLAIAFGLI+TP+ T +RIMK
Sbjct: 682 TMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMK 741

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH+ IK +S +  R IIVRD  RFHHF+ G CSCRDYW
Sbjct: 742 NLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 146/295 (49%), Gaps = 22/295 (7%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y+    +      F+ + +RDSVSW+ M+ G+  +  +        + ++ G++
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
              +TL  V+ +    + +  G+ +H  ++K GL  +  V  +L++MYAKC     A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203

Query: 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
           FD+M  RD+ +W  MI                 ++ + G +D A   F++M ++++++W+
Sbjct: 204 FDRMVVRDISSWNAMIA----------------LHMQVGQMDLAMAQFEQMAERDIVTWN 247

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSM-W 333
           +MI+ +   G   +ALD+F  ML   +L P+R T  S+L AC++   +  G ++ S +  
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE--KDEGLWGALLGACRI 386
             F +   V     ++ +  R G ++ A +LIE    +  K EG    L G  ++
Sbjct: 308 TGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 18/227 (7%)

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
            +L+H  V+KSGL    ++   L+++Y+K      AR+LFD+MP R   +W  ++ A   
Sbjct: 33  AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA--- 89

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                        Y+K G +DS  E FD++ Q++ +SW+ MI  Y   GQ  KA+ +   
Sbjct: 90  -------------YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M+   + P + T  ++L + + T  +E G ++ S +     +R +V     ++++  + G
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIV-KLGLRGNVSVSNSLLNMYAKCG 195

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
               A  + + M V +D   W A++        +DLA    + + ER
Sbjct: 196 DPMMAKFVFDRMVV-RDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/489 (41%), Positives = 287/489 (58%), Gaps = 47/489 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
             N+   N ++  Y  +  L  A  LF+ M +RDSVSW+ ++ G+++   +        E
Sbjct: 309 FPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVE 368

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
             R G  L+  T    + AC D   + +G+ +H  V+++G              Y K   
Sbjct: 369 MKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTG--------------YEK--- 411

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                           ++G A++ MY KCG ID A ++F  ++ 
Sbjct: 412 ------------------------------GCLVGNALVGMYCKCGCIDEAYDVFQGVQH 441

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+++SW+ M+A Y  HG G++AL +F  M+++ V P+ IT V +L ACSHTGL + G   
Sbjct: 442 KDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEY 501

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F SM  D+ + P+ KHY CM+DLLGRAG L+EA  LI +M  E D   WGALLGA RIH 
Sbjct: 502 FHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHG 561

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N++L E AA+ + + +P N G YVLLSN+YA +GRW DV+K+R  M +  ++K PG++W+
Sbjct: 562 NMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWV 621

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
           EV+NKIH F+VGD  HP+   IY  L  L  K++  GY+  T   LHDV+EE K   L  
Sbjct: 622 EVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKY 681

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSEKLA+AFG++  P G  IR+MKNLRVC DCH+ IKH+S I  R+IIVRD++R+HHF  
Sbjct: 682 HSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSE 741

Query: 569 GACSCRDYW 577
           G CSCRDYW
Sbjct: 742 GICSCRDYW 750



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 128/294 (43%), Gaps = 34/294 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L   N +L  YA ++ L DA  LF+ M E+D VSW+ M+ G+ +        + F    
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMP 153

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL-KSGLDIDQFVCAALVDMYAKCKVI 209
                  +  L   +R+         GRL     L +S  D +   C  L+  Y K  ++
Sbjct: 154 HKNSISWNGLLAAYVRS---------GRLEEARRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMYAKCG 254
            DARQLFDQ+P RDL++W  MI                    + DV   TA++  Y + G
Sbjct: 205 GDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDG 264

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +D AR +FD M QK  +S++ MIA Y  +    K +D+   +      PN  ++  ++ 
Sbjct: 265 MLDEARRVFDEMPQKREMSYNVMIAGYAQY----KRMDMGRELFEEMPFPNIGSWNIMIS 320

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
                G + +   LF     D   + D   +  ++    + G  +EA+ ++  M
Sbjct: 321 GYCQNGDLAQARNLF-----DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEM 369



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 166/405 (40%), Gaps = 103/405 (25%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNL----------IVANKLLYIYALHKALTDAHALFNGMKE 120
           R  F +RQ+H+ I      TN           +   K +  +  +     A  +F+ M  
Sbjct: 2   RGKFNLRQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPL 61

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R+SVS++ M+ G+ + A F                             RD  D    ++ 
Sbjct: 62  RNSVSYNAMISGYLRNAKF--------------------------SLARDLFD----KMP 91

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H          D F    ++  YA+ + + DAR LFD MP +D+V+W  M+         
Sbjct: 92  HK---------DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSG------- 135

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP----- 295
                    Y + G +D AR++FDRM  KN ISW+ ++AAY   G+ ++A  LF      
Sbjct: 136 ---------YVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDW 186

Query: 296 ----------------MMLSSRVL----PNR--ITFVSLLYACSHTGLVEEGLRLFSSMW 333
                           M+  +R L    P R  I++ +++   +  G + +  RLF    
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLF---- 242

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           ++  VR DV  +T MV    + G LDEA ++ + M  +K E  +  ++     +K +D+ 
Sbjct: 243 EESPVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMP-QKREMSYNVMIAGYAQYKRMDM- 299

Query: 394 EMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
               + L E  P  N G + ++ + Y   G       + D+M +R
Sbjct: 300 ---GRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQR 341



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 5/201 (2%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S++   F  +L +C +I  +   +QVH Q+V  G     +V N L+ +Y     + +A+ 
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYD 434

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F G++ +D VSW+ M+ G+++          F   I  G++ D  T+  V+ AC     
Sbjct: 435 VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494

Query: 174 IVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI 231
              G    H +    G+  +    A ++D+  +   +++A+ L   MP   D  TW  ++
Sbjct: 495 TDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALL 554

Query: 232 GANKFLLDVILGTAVIDMYAK 252
           GA++   ++ LG    +M  K
Sbjct: 555 GASRIHGNMELGEQAAEMVFK 575



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 117/261 (44%), Gaps = 34/261 (13%)

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----NKFLL-----------DV 240
           C   +  + +    D A  +FD MP R+ V++  MI       KF L           D+
Sbjct: 36  CTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDL 95

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                ++  YA+   +  AR +FD M +K+V+SW+AM++ Y   G   +A D+F  M   
Sbjct: 96  FSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK 155

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR--L 358
               N I++  LL A   +G +EE  RLF S       + D +  +C   + G   R  L
Sbjct: 156 ----NSISWNGLLAAYVRSGRLEEARRLFES-------KSDWELISCNCLMGGYVKRNML 204

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNV 417
            +A +L + + V +D   W  ++      ++ DL++  A+ L E  P ++   +  +   
Sbjct: 205 GDARQLFDQIPV-RDLISWNTMISG--YAQDGDLSQ--ARRLFEESPVRDVFTWTAMVYA 259

Query: 418 YANAGRWQDVAKIRDLMTRRR 438
           Y   G   +  ++ D M ++R
Sbjct: 260 YVQDGMLDEARRVFDEMPQKR 280


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 340/657 (51%), Gaps = 121/657 (18%)

Query: 41  NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANK 97
           +P  P+    +     S  P+  +  L   ++I  ++   Q+HA ++  G   +  V+  
Sbjct: 11  SPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGA 70

Query: 98  LLYIYA-LHKALTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           LL  YA  H +  D A  +F+ +   +   W++++ G  +          +   +    +
Sbjct: 71  LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDAR 129

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA----------- 204
            + +T P + +AC   + +  GR IH  V+K G+  D  + +A + MYA           
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKM 189

Query: 205 -------------------KCKVID-------------------------------DARQ 214
                              KC V++                               DAR+
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARK 249

Query: 215 LFDQMPTRDLVTWTVM-----------------------------------------IGA 233
           LFD+M  RD ++W+ M                                         IGA
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 234 -------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                        N   LD +LGTA++DMYAKCG +D   E+F+ M+++ + +W+AMI  
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
              HG+ + AL+LF  +   R+ PN IT V +L AC+H G V++GLR+F +M + + V P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
           +++HY CMVDLLGR+G   EA  LI SM ++ +  +WGALLGACRIH N DLAE   K L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           LE +PQN G YVLLSN+YA  GR+ DV+KIR LM  R +K +PG + +++   +H+F +G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D +HPQ +EIYR L  + E+L++AG+ PDT+  L D+DEE K   +  HSEKLAIAFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            T  G  I I+KNLRVC DCHS  K +S I  R IIVRD  R+HHF+ G CSC+D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/570 (38%), Positives = 314/570 (55%), Gaps = 59/570 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHAL 114
           D   +   L  C  + ++ Q   VHA +V    L N L++ N ++ +YA    L DA  +
Sbjct: 86  DYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M  +D V+W+ ++ GFS+     +    F + +R G Q + +TL  +++A      +
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGL 205

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---- 230
             G  +H   LK G     +V +ALVDMYA+C  +D A+  FD MPT+  V+W  +    
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGH 265

Query: 231 -------------------------------------IGA-------------NKFLLDV 240
                                                IGA             +   L  
Sbjct: 266 ARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIA 325

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +G  ++DMYAK GSID A+ +FDR+ + +V+SW+ M+     HG GK+ LD F  ML  
Sbjct: 326 FIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + PN I+F+ +L ACSH+GL++EGL  F  M   + V PDV HY   VDLLGR G LD 
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDR 444

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A + I  M +E    +WGALLGACR+HKN++L   AA+   E  P + G  +LLSN+YA+
Sbjct: 445 AERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYAS 504

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           AGRW+DVAK+R +M    +KK P  +W+E+EN +H F   D THP+ +EI      +S K
Sbjct: 505 AGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGK 564

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT+  L  VD++ +   L  HSEKLA+AF L+ TP G+ IRI KN+RVCGDC
Sbjct: 565 IKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDC 624

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           H+ IK VS +  R IIVRD NRFH F  G+
Sbjct: 625 HAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/556 (40%), Positives = 309/556 (55%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H   V       ++V   LL +YA  + L  A  +F+ M  R+ VSWS M+GG+   
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 137 ADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                  E F + I +  M     TL  V+RAC    D+  GR +H  ++K G  +D  +
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILL 349

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW---------------------------- 227
              L+ MYAKC VIDDA + FD M  +D V++                            
Sbjct: 350 GNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGI 409

Query: 228 ----TVMIGA----------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
               T M+G                         F  D ++  A+IDMY+KCG I  ARE
Sbjct: 410 DPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFARE 469

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+RM + +++SW+AMI  YG HG G +AL LF  +L+  + P+ ITF+ LL +CSH+GL
Sbjct: 470 VFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGL 529

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V EG   F +M  DF++ P ++H  CMVD+LGRAG +DEA   I +M  E D  +W ALL
Sbjct: 530 VMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALL 589

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACRIHKN++L E  +K +    P++ G++VLLSN+Y+ AGRW D A IR       LKK
Sbjct: 590 SACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKK 649

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           IPG +WIE+   +H F  GD +H Q  +I R L  L  +++  GY  + +F   DV+EE 
Sbjct: 650 IPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEE 709

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLAIAFG++    G  I + KNLRVCGDCH+ IK ++ IT+R I VRDAN
Sbjct: 710 KEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHAAIKFMTVITKREITVRDAN 769

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G C+C D+W
Sbjct: 770 RFHHFKNGTCNCGDFW 785



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 164/383 (42%), Gaps = 68/383 (17%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C  +  I    ++H+     G  +++ V   L+  YA    L +A  LF+ M  RD 
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           V+W+ M+ G S      +  +   +    G+  +S T+  V+    + K +  G+ +H  
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
            ++   D    V   L+DMYAKC+ +  AR++FD M  R+ V+W+ MIG           
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEA 295

Query: 234 ----NKFLLD-------VILGTA-------------------------VIDM-------- 249
               ++ +L        V LG+                          V+D+        
Sbjct: 296 LELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLS 355

Query: 250 -YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            YAKCG ID A   FD M  K+ +S+SA+++    +G    AL +F MM  S + P+  T
Sbjct: 356 MYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTT 415

Query: 309 FVSLLYACSHTGLVEEGLRLFSS----MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            + +L ACSH   ++ G   F S    +   FA   D      ++D+  + G++  A ++
Sbjct: 416 MLGVLPACSHLAALQHG---FCSHGYLIVRGFAT--DTLICNALIDMYSKCGKISFAREV 470

Query: 365 IESMSVEKDEGLWGALLGACRIH 387
              M    D   W A++    IH
Sbjct: 471 FNRMD-RHDIVSWNAMIIGYGIH 492



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 16/218 (7%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + +  +++ + +++H   +   +  +  V +KL  +Y     +  A  LF+ +    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            + W+ ++  ++    F    + +   +  G++ + YT PFV++AC     I  G  IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
                GL+ D FVC ALVD YAKC ++ +A++LF  M  RD+V W  MI           
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMI----------- 182

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
             A   +Y  C   D A ++  +M+++ +   S+ I  
Sbjct: 183 --AGCSLYGLC---DDAVQLIMQMQEEGICPNSSTIVG 215



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 5/159 (3%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           +Y  C  +  AR +FD +   +VI W+ +I AY ++G    A+DL+  ML   V PN+ T
Sbjct: 52  LYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYT 111

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +  +L ACS    +E+G+ + S     F +  DV   T +VD   + G L EA +L  SM
Sbjct: 112 YPFVLKACSGLLAIEDGVEIHSHA-KMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSM 170

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           S  +D   W A++  C ++    L + A + +++ Q + 
Sbjct: 171 S-HRDVVAWNAMIAGCSLY---GLCDDAVQLIMQMQEEG 205


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/526 (39%), Positives = 322/526 (61%), Gaps = 23/526 (4%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +P    S L +C   +++   +++H   V  G + NL V + L+ +YA   ++ +A  +F
Sbjct: 178 NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVF 237

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC----RDR 171
           + M  RD VSW+ ++  + K  ++   F  F +  R G++ D  T   VI  C    R  
Sbjct: 238 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE 297

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
           + + M R +     K G   ++   ++++     C   ++ R +  ++       W V  
Sbjct: 298 EAVEMFRKMQ----KMGFKPNEITISSIL---PACSFSENLR-MGKEIHCYVFRHWKVG- 348

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                  D+   TA++ MYAKCG ++ +R +FD MR+K+V++W+ MI A   HG GK+AL
Sbjct: 349 -------DLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEAL 401

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            LF  ML SRV PN +TF  +L  CSH+ LVEEG+++F+SM  D  V PD  HY+C+VD+
Sbjct: 402 FLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDI 461

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
             RAGRL+EA K I+ M +E     WGALL ACR++KNV+LA+++AK L E +P NPG+Y
Sbjct: 462 YSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNY 521

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           V L N+   A  W + +++R LM  R + K PG +W++V NK+H F VGD ++ +S++IY
Sbjct: 522 VSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIY 581

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  L EK+++AGY PDT++ L D+D+E K  +L +HSEKLA+AFG++     + IR+ 
Sbjct: 582 NFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVF 641

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+CGDCH+ IK++S +   +I+VRD+ RFHHF+ G CSC+D W
Sbjct: 642 KNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 178/378 (47%), Gaps = 34/378 (8%)

Query: 21  SSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCR---NIFQ 75
           ++ +T   AL  HG     +     +Q        R + P    F+++  +C    +  +
Sbjct: 44  TTCSTLISALTTHGLSNEAIKIYSSLQ-------ERGIKPDMPVFLAAAKACAVSGDALR 96

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +++VH      G ++++ V N L++ Y   K +  A  +F+ +  RD VSW+ +   + K
Sbjct: 97  VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVK 156

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   + FRE    G++ +  T+  ++ AC + KD+  G+ IH   ++ G+ ++ FV
Sbjct: 157 CGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFV 216

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           C+ALV +YAKC  + +AR +FD MP RD+V+W                  V+  Y K   
Sbjct: 217 CSALVSLYAKCLSVREARMVFDLMPHRDVVSW----------------NGVLTAYFKNKE 260

Query: 256 IDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            +    +F +M +  V     +W+A+I     +G+ ++A+++F  M      PN IT  S
Sbjct: 261 YEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISS 320

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +L ACS +  +  G  +   ++  + V  D+   T ++ +  + G L+ +  + + M   
Sbjct: 321 ILPACSFSENLRMGKEIHCYVFRHWKV-GDLTSTTALLYMYAKCGDLNLSRNVFDMMR-R 378

Query: 372 KDEGLWGALLGACRIHKN 389
           KD   W  ++ A  +H N
Sbjct: 379 KDVVAWNTMIIANAMHGN 396



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 112/276 (40%), Gaps = 54/276 (19%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + + D  + S ++   +         + +      G++ D        +AC  
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D +  + +HD   + G+  D FV  AL+  Y KCK ++ AR++FD +  RD+V+WT +
Sbjct: 91  SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150

Query: 231 ------------------------IGANKFLLDVIL----------------GTAV---- 246
                                   +  N   +  IL                G AV    
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 210

Query: 247 ----------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                     + +YAKC S+  AR +FD M  ++V+SW+ ++ AY  + + +K   LF  
Sbjct: 211 VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLK 270

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           M    V  +  T+ +++  C   G  EE + +F  M
Sbjct: 271 MSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 306



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 41/79 (51%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG  +I +    G  + AR++FD + Q +  + S +I+A   HG   +A+ ++  +    
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 302 VLPNRITFVSLLYACSHTG 320
           + P+   F++   AC+ +G
Sbjct: 74  IKPDMPVFLAAAKACAVSG 92


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/589 (36%), Positives = 329/589 (55%), Gaps = 72/589 (12%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           + FIS L +C++  QI  ++A+I+      +  V  +LL + +   ++  A  +F+  + 
Sbjct: 33  RHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQN 92

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            +   ++ ++ G      + +    + + I   +  DSY +  V++AC     +  GR +
Sbjct: 93  PNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREV 152

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------------------ 222
           H  VLK GL  ++ +   L+++Y KC   +DAR++FD+MP R                  
Sbjct: 153 HSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIK 212

Query: 223 DLVTWTVM-----------------------------------------IGA-------- 233
           D V WT M                                         +GA        
Sbjct: 213 DTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVR 272

Query: 234 -----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                ++  L+  +G A+I+MY++CG ID A+ +F++M++KNVI++++MI  +  HG+  
Sbjct: 273 SYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSV 332

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +A++LF  ++     P+ +TFV +L ACSH GL E G  +F SM  D+ + P ++HY CM
Sbjct: 333 EAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCM 392

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGR GRL+EA   I  M V  D  + GALL AC+IH N++LAE  AKSL+  +  + 
Sbjct: 393 VDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADS 452

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
           G Y+LLSN Y+++G+W++ A++R  M    ++K PG + IEV N+IH+F +GD  HPQ E
Sbjct: 453 GTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKE 512

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +IY+ L  L++ L L GY P T   LHD+++  K   L  HSE+LAI +GLI+T   T +
Sbjct: 513 KIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKPLTTL 572

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R++KNLRVC DCH  IK +S ITRR I+VRD NRFHHFE G CSC DYW
Sbjct: 573 RVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/539 (41%), Positives = 304/539 (56%), Gaps = 55/539 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           VA  L+ +Y    +L +AH +F  +  ++SV W VM+ G    ++    FE F    R G
Sbjct: 150 VAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSG 209

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDA 212
            +LD + +  +I+AC +      G+  H + +K   +D + F+  +LVDMY KC  +D A
Sbjct: 210 FELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA 269

Query: 213 RQLFDQMPTRDL-----------------------------------VTWTVMIGA---- 233
            +LF+++  RD+                                   VT+  ++ A    
Sbjct: 270 LKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSL 329

Query: 234 ---------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                          N   LDV   T+ IDMYAKCG I +A  +F ++ +KNV SWS MI
Sbjct: 330 GSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMI 389

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
             +G HG   +AL+LF  M S   LPN +TFVS+L ACSH+G +EEG   F SM  D+ +
Sbjct: 390 NGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGI 449

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P  +HY CMVDLLGRAG++DEAL  I +M  E     WGALLGACRIH+  +LAE  AK
Sbjct: 450 TPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAK 509

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            LL  +    G YV+LSN+YA+ G W+ V K R  M  + + KI G+T IE+E K++ FS
Sbjct: 510 KLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFS 569

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
             D    ++ +I  +  +L E++   GY+PD  F LHDVD+EVK   L  HSEKLAI FG
Sbjct: 570 SEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFG 629

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           L+ + EG  IRI KN+RVCGDCH+  K +S ITRR II+RD  RFHH + G CSC DYW
Sbjct: 630 LLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 169/365 (46%), Gaps = 57/365 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q++AQI+      +L+    +   Y    +L  A   FN +   +  SW+ ++   SK  
Sbjct: 33  QLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNK 92

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            F +  + F+  ++ G  +DS+ L F ++AC         +L H + +K  L+ D +V  
Sbjct: 93  CFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAP 152

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------NKFLL 238
           AL+++Y +   +++A ++F+++P ++ V W VMI                     + F L
Sbjct: 153 ALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFEL 212

Query: 239 DVILGTAVI----DMYA--------------------------------KCGSIDSAREI 262
           D  +   +I    ++YA                                KCG +D A ++
Sbjct: 213 DPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKL 272

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ +  ++V+ WSA+IA +  +G+  +++ +F  ML+  V PN +TF S++ ACS  G +
Sbjct: 273 FEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSL 332

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G  +   M  +  V  DVK+YT  +D+  + G +  A ++   +  EK+   W  ++ 
Sbjct: 333 KQGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP-EKNVFSWSTMIN 390

Query: 383 ACRIH 387
              +H
Sbjct: 391 GFGMH 395



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 76/184 (41%), Gaps = 7/184 (3%)

Query: 57  SVDPK--FFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           SV P    F S +L+C ++  ++Q   VH  ++  G   ++      + +YA    +  A
Sbjct: 311 SVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTA 370

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           + +F  + E++  SWS M+ GF            F E        +S T   V+ AC   
Sbjct: 371 YRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHS 430

Query: 172 KDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTV 229
             I  G      +    G+   +   A +VD+  +   ID+A    + MPT    + W  
Sbjct: 431 GRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGA 490

Query: 230 MIGA 233
           ++GA
Sbjct: 491 LLGA 494


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/575 (38%), Positives = 315/575 (54%), Gaps = 56/575 (9%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F  +L +C  +  +R    V  +    G   ++ V + LL++YA   A+ DA  +F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD V+WS MV GF      ++  + +R     G++ D   +  VI+AC   +++ 
Sbjct: 167 DRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           MG  +H  +L+ G+ +D     +LVDMYAK  ++D A ++F  M  R+ V+W+ MI    
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286

Query: 234 ---------------------------------------------------NKFLLDVIL 242
                                                               +F  + IL
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCIL 346

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTA IDMY+KCGS+ SA+ +F+ +  +++I W+AMIA  G HG+G+ AL LF  M  + +
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  TF SLL A SH+GLVEEG   F  M + F + P  KHY C+VDLL R+G ++EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            L+ SM  E    +W ALL  C  +K ++L E  A ++LE QP + G   L+SN+YA   
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W  V ++R LM     KK+PG + IE+    H F + D +HPQ EEI   +  L  ++ 
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GYIP T F  HD++EEVK   L  HSEKLAIAFGL+ T  GT + I+KNLRVCGDCH 
Sbjct: 587 KMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHD 646

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK++S I  R I+VRDA RFHHF+ G CSCRDYW
Sbjct: 647 AIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/556 (37%), Positives = 330/556 (59%), Gaps = 56/556 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VHA  +     ++  V N L+ +Y   + +  +  +F+ M+ +D +SW+ ++  +++ 
Sbjct: 386 KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQS 445

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           +  I   E FRE  + G+++D   +  ++ AC   + I++ + +H   +++GL +D  V 
Sbjct: 446 SRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDLVVK 504

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLD--------------- 239
             ++D+Y +C  +  + ++F+ +  +D+VTWT MI   AN  LL+               
Sbjct: 505 NRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQ 564

Query: 240 -------VILG------------------------------TAVIDMYAKCGSIDSAREI 262
                   ILG                              ++++DMY+ CGS+  A ++
Sbjct: 565 PDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKV 624

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ ++ K+++ W+AMI A G HG GK+A+DLF  ML + V P+ ++F++LLYACSH+ LV
Sbjct: 625 FNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLV 684

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EG      M   + + P  +HY C+VDLLGR+G+ +EA + I+SM ++    +W +LLG
Sbjct: 685 NEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLG 744

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+HKN +LA +AA  LLE +P NPG+YVL+SNV+A  G+W +  ++R  ++ R L+K 
Sbjct: 745 ACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKD 804

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVDEEV 501
           P  +WIE+ N +H F+  D++H  +E I   L  ++E+L +  GY  DT   LHDV EE 
Sbjct: 805 PACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEE 864

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           KV  L+ HSE+LAI+FGLI T  G  +RI KNLRVCGDCH F K VS +  R I+VRDAN
Sbjct: 865 KVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDAN 924

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF GG+CSC D+W
Sbjct: 925 RFHHFSGGSCSCGDFW 940



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 184/423 (43%), Gaps = 68/423 (16%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S++    +  L  C  + Q+   R++HA ++  G+  N I  N LL +Y     +  A  
Sbjct: 263 SMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN-IQCNALLVMYTKCGRVDSALR 321

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  + E+D +SW+ M+  + +   +    E   E +R G Q D   +  +  A      
Sbjct: 322 VFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGW 381

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-- 231
           ++ G+ +H   +K  LD D  V   L+DMY KC+ I+ +  +FD+M  +D ++WT +I  
Sbjct: 382 LLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITC 441

Query: 232 -------------------------------------GANKFLL--------------DV 240
                                                G    LL              D+
Sbjct: 442 YAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDL 501

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           ++   +ID+Y +CG +  + ++F+ + QK++++W++MI  Y   G   +AL LF  M S+
Sbjct: 502 VVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQST 561

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH----YTCMVDLLGRAG 356
            V P+ +  VS+L A      + +G  +       F +R +        + +VD+    G
Sbjct: 562 DVQPDSVALVSILGAIGGLSSLAKGKEVHG-----FLIRRNFHMEEAIVSSLVDMYSGCG 616

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            L  ALK+  ++   KD  LW A++ A  +H +   A    K +L+     P H   L+ 
Sbjct: 617 SLSGALKVFNAVKC-KDMVLWTAMINATGMHGHGKQAIDLFKRMLQ-TGVTPDHVSFLAL 674

Query: 417 VYA 419
           +YA
Sbjct: 675 LYA 677



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 137/314 (43%), Gaps = 59/314 (18%)

Query: 71  RNIFQIRQVHAQIVAGGTLT--NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           + + Q  QVHA  VA G+L   +  +A KLL++Y     + DA  LF+GM  R   SW+ 
Sbjct: 72  KAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNA 131

Query: 129 MVGGF---SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           ++G +       + +  +   R     G+  D  TL  V++A     D   G  +H + +
Sbjct: 132 LIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV 191

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA----NKFL--L 238
           K GLD   FV  AL+ MYAKC ++D A ++F+ M   RD+ +W  MI        FL  L
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251

Query: 239 DVILG-----------------------------------------------TAVIDMYA 251
           D+  G                                                A++ MY 
Sbjct: 252 DLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVMYT 311

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KCG +DSA  +F  + +K+ ISW++M++ Y  +G   +A++    ML     P+    VS
Sbjct: 312 KCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVS 371

Query: 312 LLYACSHTGLVEEG 325
           L  A  H G +  G
Sbjct: 372 LSSAVGHLGWLLNG 385



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 12/153 (7%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM- 297
           D  L T ++ MY KCG +  AR +FD M  + V SW+A+I AY   G   +AL ++  M 
Sbjct: 94  DGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMR 153

Query: 298 --LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT----CMVDL 351
              +S V P+  T  S+L A    G    G  +        AV+  +   T     ++ +
Sbjct: 154 LSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHG-----LAVKHGLDRSTFVANALIAM 208

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
             + G LD A+++ E M   +D   W +++  C
Sbjct: 209 YAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 321/557 (57%), Gaps = 56/557 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+ H +++  G  ++L V N L+  Y    +   A  +F+    RD V+W++M+      
Sbjct: 131 RRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNK 190

Query: 137 ADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                 F+   E  +   ++ D  T+  ++ AC    ++  G+ +H    + GLD +  V
Sbjct: 191 GLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRV 250

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------NKF 236
             A++DMY KC  I+ A+++F+++  +D+++WT M+                     NK 
Sbjct: 251 NNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKI 310

Query: 237 LLD-----------------------------------VILGTAVIDMYAKCGSIDSARE 261
            LD                                   ++L TA++DMYAKCGSID A +
Sbjct: 311 ELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQ 370

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F RMR +NV +W+A+I     HG G+ A+ LF  M   +++P+ +TF++LL ACSH GL
Sbjct: 371 VFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGL 430

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+EGL +F +M + F + P ++HY C+VDLL RA ++D+AL  IE+M ++ +  LW  LL
Sbjct: 431 VDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLL 490

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR   + DLAE   + ++E +P + G YV+LSN+YA   +W    K+R  M  + ++K
Sbjct: 491 GACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEK 550

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEE 500
            PG +WIE+   IHQF  GD +H Q+E+IY M+  ++ ++ L  G++P T   L D++EE
Sbjct: 551 TPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEE 610

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K  +L+ HSEKLAIA GLI+TP G+ IRI+KNLRVC DCHSF+K  S +  R I+ RD 
Sbjct: 611 EKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDR 670

Query: 561 NRFHHFEGGACSCRDYW 577
           +RFHHF+ G+CSC D+W
Sbjct: 671 SRFHHFKEGSCSCMDFW 687



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 187/395 (47%), Gaps = 62/395 (15%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA-- 107
           P  + T+ +   F  +    C +I + +Q HA ++    L N + ++KL+   AL  +  
Sbjct: 4   PSSKCTKLISVDFLKTH---CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGD 60

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  LF  M+  D    + M+ G+++  +       +   +  G+ +D+YT PFV+ A
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAA 120

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C     + +GR  H  VLK+G   D FV  AL+  Y  C     A  +FD+   RD+VTW
Sbjct: 121 CARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTW 180

Query: 228 TVMIGAN---------------------------------------------KFL----- 237
            +MI A+                                             KFL     
Sbjct: 181 NIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSK 240

Query: 238 ---LDVIL--GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
              LD  L    A++DMY KC  I+SA+E+F+R+R+K+V+SW++M++     G  ++AL 
Sbjct: 241 ELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALA 300

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  M  +++  + IT V +L AC+ TG +++G +    + D F +  D+   T +VD+ 
Sbjct: 301 LFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMY 359

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            + G +D AL++   M V ++   W AL+G   +H
Sbjct: 360 AKCGSIDLALQVFRRMRV-RNVFTWNALIGGLAMH 393


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/604 (36%), Positives = 339/604 (56%), Gaps = 68/604 (11%)

Query: 32  PHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTN 91
           P  H  +  NP+            +S+D K  IS L   ++I Q+  +HAQ++  G   +
Sbjct: 14  PKPHPNSNSNPKS----------LKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQD 63

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
             +  +LL   +   A+  A  +F      +   ++ ++ GF    ++ +  + +   + 
Sbjct: 64  PFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLH 123

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
             +  D+Y +  +++AC  +  +  GR +H   LK GL  ++ V   ++++Y KC  + D
Sbjct: 124 DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 183

Query: 212 ARQLFDQMP----TRDLVTWTVMIGA------------------------NKFL------ 237
           AR++F++MP     +D V WT MI                          N+F       
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 238 ------------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                   L++ +G A+I+MY++CGSID A+ +FD M+ ++VI+
Sbjct: 244 ACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 303

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           ++ MI+    +G+ ++A++LF +M+  R+ P  +TFV +L ACSH GLV+ G ++F SM 
Sbjct: 304 YNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMT 363

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            D+ V P ++HY CMVDLLGR GRL+EA  LI +M +  D  + G LL AC++HKN++L 
Sbjct: 364 RDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELG 423

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E  AK L +R   + G YVLLS+VYA++G+W++ A++R  M    ++K PG + IEV N+
Sbjct: 424 EQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNE 483

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           IH+F +GD  HP+ E IY  L  L+  L L GY P+    L D+++  K   L  HSE+L
Sbjct: 484 IHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERL 543

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AI +GLI+T   T IR+MKNLRVC DCHS IK ++ ITRR ++VRD NRFH+FE GACSC
Sbjct: 544 AICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSC 603

Query: 574 RDYW 577
            DYW
Sbjct: 604 GDYW 607


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 318/569 (55%), Gaps = 57/569 (10%)

Query: 66  SLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           +L SC  +  +   R V A  V  G + +  V + L+++YA    +  A  +F+  +E  
Sbjct: 126 ALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESG 185

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            V W+ +V  + K  D++   E F+  +  G+  D  TL  V+ AC    D  +G+ +  
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAG 245

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------ 230
            V + GL  +  +  AL+DMYAKC  I  AR+LFD M +RD+V W+ M            
Sbjct: 246 HVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCRE 305

Query: 231 -----------------------------IGA-------------NKFLLDVILGTAVID 248
                                        +GA              +  L  ILGTA++D
Sbjct: 306 ALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVD 365

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            YAKCG ID A E F+ M  KN  +W+A+I     +G+G++AL+LF  M  + + P  +T
Sbjct: 366 FYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVT 425

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +L ACSH+ LVEEG R F SM  D+ ++P V+HY CMVDLLGRAG +DEA + I +M
Sbjct: 426 FIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTM 485

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +E +  +W ALL +C +H+NV + E A K ++   P + G YVLLSN+YA+AG+W+D A
Sbjct: 486 PIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAA 545

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
            +R  M  R ++K PG + IE++  + +F   DS HP+  EIY+ +  +  ++++AGY+P
Sbjct: 546 MVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVP 605

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           +T     +V+E  K  ++  HSEKLAIAFGL+    G  IR+ KNLRVC DCHS  K +S
Sbjct: 606 NTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLIS 665

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  R I+VRD N FHHF+ G CSC DYW
Sbjct: 666 KVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 168/419 (40%), Gaps = 85/419 (20%)

Query: 23  STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQ 82
           +T    A  P      P  PR P++           DP +             + Q+HA 
Sbjct: 2   ATAVPTAALPTPGRAGPAPPRAPLR----------ADPSY-------------LPQLHAA 38

Query: 83  IVAGGTLTNLIVA-NKLLYIYALHKALTDAHALFNGMKERDSVS---WSVMVGGFSKVAD 138
           ++  G LT    + + LL   A    L         +  R  +S   ++V++  F     
Sbjct: 39  LIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGH 98

Query: 139 FINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +    F E +        D +T    +++C     + +GR +    +K GL  D+FV 
Sbjct: 99  PEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVL 158

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI--------LGTA 245
           ++L+ MYA C  +  AR +FD      +V W  ++ A   N   ++V+        +G A
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVA 218

Query: 246 -----VIDMYAKCG--------------------------------------SIDSAREI 262
                ++ +   CG                                       I  AR +
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M+ ++V++WSAMI+ Y    Q ++AL LF  M  +RV PN +T VS+L AC+  G +
Sbjct: 279 FDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGAL 338

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           E G  + S +         +   T +VD   + G +D+A++  ESM V K+   W AL+
Sbjct: 339 ETGKWVHSYVRRKRLSLTTILG-TALVDFYAKCGCIDDAVEAFESMPV-KNSWTWTALI 395


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/523 (40%), Positives = 313/523 (59%), Gaps = 25/523 (4%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA +V  G   N+ V N L+ +Y     L +A  + + M  RD VSW+ +V G ++  
Sbjct: 158 QIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNG 217

Query: 138 DFINCFETFREFIRCGMQLDSYT----LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            F +  E  +E    G++ D+ T    LP V   C D    V   +   +  KS +  + 
Sbjct: 218 QFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFV-KEMFMKLANKSLVSWNV 276

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG---------- 243
            + A  ++     + +D   Q+ D     D ++   ++ A   L  ++LG          
Sbjct: 277 MI-AVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRK 335

Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                     A+IDMYAKCG ++ ARE+FD+M+ ++V+SW++MI+AYG +G+G+ A+ LF
Sbjct: 336 RLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLF 395

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M    + P+ I FVS+L ACSH GL++EG   F  M ++  + P ++H+ CMVDLLGR
Sbjct: 396 SRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGR 455

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG++DEA   I+ M +E +E +WGALL ACR++ N+ +  +AA  L +  P+  G+YVLL
Sbjct: 456 AGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLL 515

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+YA AGRW+DV  +R +M  + +KK+PG +  E++N++H F  GD +HPQS++IY  L
Sbjct: 516 SNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEEL 575

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
                K++ AGY+P+T+  LHDV+EE K  +L  HSEKLAIAF ++ T  G+ IRI KNL
Sbjct: 576 DVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNL 635

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RVCGDCH   K +S I  R I +RD NRFHHF  G CSC DYW
Sbjct: 636 RVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 165/338 (48%), Gaps = 32/338 (9%)

Query: 72  NIFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +I  ++++H++I     L +N  +  KL+  YA+         +F+ + +++ V ++VM+
Sbjct: 50  DIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMI 109

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             +     + +    F+     G+  D YT P V++A    +D+ +G  IH  V++ GLD
Sbjct: 110 RSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLD 169

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVILGT 244
           ++ FV   L+ MY KC  + +A ++ DQMP RD+V+W  ++      G     L+V    
Sbjct: 170 LNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEM 229

Query: 245 AVIDMYAKCGSIDS---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
            ++ +    G++ S                +E+F ++  K+++SW+ MIA Y  +    +
Sbjct: 230 ELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAE 289

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHY 345
           A+D+F  M    V P+ I+  S+L AC     +  G R+      ++ VR    P++   
Sbjct: 290 AVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH-----EYVVRKRLQPNLLLE 344

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             ++D+  + G L+ A ++ + M   +D   W +++ A
Sbjct: 345 NALIDMYAKCGCLEYAREVFDQMKF-RDVVSWTSMISA 381



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 11/201 (5%)

Query: 57  SVDPKFF-ISSLL-SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           +VDP    I+S+L +C ++  +   R++H  +V      NL++ N L+ +YA    L  A
Sbjct: 301 AVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYA 360

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F+ MK RD VSW+ M+  +       +    F      G+  DS     V+ AC   
Sbjct: 361 REVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHA 420

Query: 172 KDIVMGRLIHDIV---LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTW 227
             +  GR    ++    K    I+ FVC  +VD+  +   +D+A     QMP   +   W
Sbjct: 421 GLLDEGRYYFKLMTEECKIVPRIEHFVC--MVDLLGRAGQVDEAYGFIKQMPMEPNERVW 478

Query: 228 TVMIGANKFLLDVILGTAVID 248
             ++ A +   ++I+G    D
Sbjct: 479 GALLSACRVYSNMIIGLLAAD 499


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/519 (40%), Positives = 301/519 (57%), Gaps = 56/519 (10%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  M E+D VSW+ ++ G ++   +       RE     ++ DS+TL  V+    +  D
Sbjct: 256 IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVD 315

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-KVIDDAR------------------- 213
           I  G+ IH   ++ GLD + +V ++L+DMYAKC +V+D  R                   
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 214 ----QLFDQ-----------------------MPTRDLVTWTVMIGA--------NKFLL 238
                LFD+                       MP    +T T+ +G         N F  
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLT-TLHLGKQLHGYITRNGFDE 434

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           ++ + ++++DMYAKCG+I +AR+IFDRMR ++++SW+AMI     HG    A++LF  M 
Sbjct: 435 NIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMK 494

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           +  + PN + F+++L ACSH GLV+E  + F+SM  DF + P V+HY  + DLLGRAGRL
Sbjct: 495 TEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRL 554

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA   I  M +     +W  LL ACR+HKNVD+AE  A  +LE  P+N G Y+LL+N+Y
Sbjct: 555 EEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIY 614

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           + A RW++ AK R  + R  ++K P  +WIEV NK++ F  GD +HP  E+I   +  L 
Sbjct: 615 SAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLM 674

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E +E  GY+PDT+   HDV+EE K   + SHSE+LAI FG+I TP GT IR+ KNLRVC 
Sbjct: 675 ELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCT 734

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+  K +S I  R I+VRD +RFHHF+ G CSC DYW
Sbjct: 735 DCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/362 (20%), Positives = 162/362 (44%), Gaps = 49/362 (13%)

Query: 68  LSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           LS ++  Q +Q+HAQ++     +   ++  L  IY+    L D+  LFN +    +++W 
Sbjct: 19  LSIKSRSQAQQLHAQVLKFQASSLCNLSLLLS-IYSHINLLHDSLRLFNTLHFPPALAWK 77

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            ++  ++          +F   +  G+  D    P V++AC    D+ +G  +H  +++ 
Sbjct: 78  SVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRV 137

Query: 188 GLDIDQFVCAALVDMYAKCKVIDD-------ARQLFDQMP--TRDLVTWTVMIG------ 232
           GLD D +   AL++MY+K + +         A Q+ D+M   TR + T +V++G      
Sbjct: 138 GLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKV 197

Query: 233 -------------ANKFLLDVI-----------------LGTAVIDMYAKCGSIDSAREI 262
                        + +F   V+                 LG  + D+ +   S+DS R+I
Sbjct: 198 SDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKDI-SHSMSVDSVRKI 256

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M +K+++SW+ +IA    +G   + L +   M  + + P+  T  S+L   +    +
Sbjct: 257 FEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDI 316

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            +G  +         +  +V   + ++D+  +  R+ ++ ++  ++  E+D   W +++ 
Sbjct: 317 SKGKEIHGCSIRQ-GLDAEVYVASSLIDMYAKCTRVVDSYRVF-TLLTERDGISWNSIIA 374

Query: 383 AC 384
            C
Sbjct: 375 GC 376


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/561 (40%), Positives = 314/561 (55%), Gaps = 65/561 (11%)

Query: 77  RQVHAQIVAGGTLTN-----LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           R +H  + A G L +     L V+N L  +YA    L DA  +F+GM  R+ V+W+ +V 
Sbjct: 84  RLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVA 143

Query: 132 GFSKVADFINCFETFREFI---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
             +         E  R  +   R G+  ++YT   V+ AC       M   +H   +K+G
Sbjct: 144 ALASADGRKQ--EALRFLVAMRRDGVAPNAYTFSSVLGACTTPG---MLTAVHASTVKAG 198

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-------------------- 228
           LD D FV ++L+D Y K   +D  R++FD+M TRDLV W                     
Sbjct: 199 LDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFM 258

Query: 229 ------------------------VMIGAN--------KFLLDVILGTAVIDMYAKCGSI 256
                                   VM+ A         K+  D+IL  A++DMY KCGS+
Sbjct: 259 RMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSL 318

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A  +F RM Q++VISWS M++    +G+  +AL +F +M S  V PN +T V +L+AC
Sbjct: 319 EDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFAC 378

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLVE+G   F SM   F ++P+ +H+ CMVDLLGRAG+LDEA++ I  MS+E D  +
Sbjct: 379 SHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVI 438

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W  LLGACR+HKN  LA  AA+ +L+ +P + G  VLLSN YA+  +W D  K    M  
Sbjct: 439 WRTLLGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRD 498

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R ++K PG +WIE+E ++H F  GD +HP S+ I + L  L  +++  GY+P T F L D
Sbjct: 499 RGMRKEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQD 558

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           +  E K   L  HSEK+AI FG +   +G  IRIMKNLR+CGDCH+F K VS    RVI+
Sbjct: 559 LPTEQKEDLLKYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIV 618

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RD  RFHHF+ GACSC DYW
Sbjct: 619 IRDPVRFHHFQDGACSCGDYW 639



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 146/330 (44%), Gaps = 66/330 (20%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQ----FVCAALVDMYAKCKVIDD 211
           D  +L  +++ C        GRLIH  V   G L  D     FV  +L  MYAK  ++DD
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 212 ARQLFDQMPTRDLVTWTVMIGA-------------------------NKFLLDVILG--- 243
           A ++FD MP R++VTWT ++ A                         N +    +LG   
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 244 ------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                   +++ID Y K G +D  R +FD M  ++++ W+++IA
Sbjct: 183 TPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIA 242

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +   G G  A++LF  M  +    N+ T  S+L AC+   ++E G ++ + +       
Sbjct: 243 GFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV---LKYD 299

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAK 398
            D+  +  ++D+  + G L++A  L   M  ++D   W  ++ G  +  K+V+   +   
Sbjct: 300 RDLILHNALLDMYCKCGSLEDADALFHRMP-QRDVISWSTMVSGLAQNGKSVE--ALRVF 356

Query: 399 SLLERQPQNPGHYVLLSNVYA--NAGRWQD 426
            L++ Q   P H  ++  ++A  +AG  +D
Sbjct: 357 DLMKSQGVAPNHVTMVGVLFACSHAGLVED 386



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 13/191 (6%)

Query: 54  FTRSVDPKF------FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYAL 104
           F R  D  F        S L +C  +  +   RQVHA ++      +LI+ N LL +Y  
Sbjct: 257 FMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLKYDR--DLILHNALLDMYCK 314

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
             +L DA ALF+ M +RD +SWS MV G ++    +     F      G+  +  T+  V
Sbjct: 315 CGSLEDADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGV 374

Query: 165 IRACRDRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR- 222
           + AC     +  G      +    G+  ++     +VD+  +   +D+A +    M    
Sbjct: 375 LFACSHAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEP 434

Query: 223 DLVTWTVMIGA 233
           D V W  ++GA
Sbjct: 435 DSVIWRTLLGA 445


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/574 (39%), Positives = 324/574 (56%), Gaps = 55/574 (9%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           D   F S   SCRN  + +Q+H      G  ++    N L+ +Y+    L  A  +F+ M
Sbjct: 87  DRYTFPSLFKSCRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKM 146

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMG 177
           +++  VSW+ M+G  ++          F   ++   ++ +  TL  V+ AC   +D+ M 
Sbjct: 147 EDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMV 206

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD-------------------- 217
           + IH+ + + G      +   L+D+Y KC  +  AR LFD                    
Sbjct: 207 KRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVED 266

Query: 218 -----------QMPTR----DLVTWTVMIGANKFL-------------------LDVILG 243
                      +M T+    D VT   ++ A   L                   +DV LG
Sbjct: 267 SNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALG 326

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           TA++DMYAKCGSI++A ++F  M +K+V++W+A+I      GQ + AL  F  M    V 
Sbjct: 327 TALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVK 386

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ ITFV +L ACSH G V+EG+  F+SM D + ++P ++HY  +VD+LGRAGR+ EA +
Sbjct: 387 PDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEE 446

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           LI+SM +  D+ + G LLGACRIH N++ AE AAK LLE  P + G YVLLSN+Y ++ +
Sbjct: 447 LIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKK 506

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W++  + R+LM  R ++K PG + IEV   +H+F  GDS+H QS EI  ML  +  KL+ 
Sbjct: 507 WEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKN 566

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           AGY+PD +  L D+ EE K   L  HSEKLAIAFGL++T  GT IR++KNLR+C DCHS 
Sbjct: 567 AGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSA 626

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            K +S +  R IIVRD NRFHHF+ G CSCR +W
Sbjct: 627 TKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 49/244 (20%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q++Q+HAQ++  G   +   A+K++               F  ++E  S+ ++ +V  FS
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIV--------------AFCSLQESGSLQYARLV--FS 46

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           ++ +                   SYT   +IR C D+       L +  ++  GL  D++
Sbjct: 47  QIPN-----------------PTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRY 89

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
              +L   +  C+   + +Q+            +  +G   F  D      +++MY+ CG
Sbjct: 90  TFPSL---FKSCRNSSEGKQIH---------CHSTKLG---FASDTYAQNTLMNMYSNCG 134

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP-MMLSSRVLPNRITFVSLL 313
            + SAR++FD+M  K V+SW+ MI  +    Q  +A+ LF  MM S  V PN +T V++L
Sbjct: 135 CLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVL 194

Query: 314 YACS 317
            AC+
Sbjct: 195 TACA 198


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 335/607 (55%), Gaps = 88/607 (14%)

Query: 59  DPKFFISSLLSC--RNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +P  F   L SC   N   + +Q+H+ I+  G  ++  ++N LL +Y+    L  A  LF
Sbjct: 51  EPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLF 110

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFRE--------------------FIRCGMQ 155
             M  ++ +S ++++ G+ +  D++   + F E                    F   G+ 
Sbjct: 111 GVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLG 170

Query: 156 L-----------DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           L           D + L  V+R C   + +V GR +H  V K G + +  V ++L  MY 
Sbjct: 171 LFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYM 230

Query: 205 KCKVIDDARQLFDQMPTR-----------------------------------DLVTWTV 229
           KC  + +  +L   MP++                                   D +T+  
Sbjct: 231 KCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVS 290

Query: 230 MIGANKFL-------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +I +   L                   L V + +++I MY++CG ++ + ++F      +
Sbjct: 291 VISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGD 350

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+ WS+MIAAYG+HG+G +A+DLF  M   ++  N +TF+SLLYACSH GL E+G++ F 
Sbjct: 351 VVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFD 410

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M + + V+P ++HYTCMVDLLGR G ++EA  LI SM V+ D   W  LL AC+IHK  
Sbjct: 411 LMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKT 470

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           ++A   ++ +    P++P  YVLLSN++A+  RW DV+ +R  M  R+LKK PG +W+EV
Sbjct: 471 EMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEV 530

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +N+IHQF +GD +HP+S EI   L  L+ +++  GY+PD +  LHD+D E K  +L  HS
Sbjct: 531 KNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHS 590

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAF L+ TP GT IR++KNLRVC DCH  IK++S I+ R IIVRD++RFHHF+ G 
Sbjct: 591 EKLAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGR 650

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 651 CSCGDYW 657


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 315/602 (52%), Gaps = 85/602 (14%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           + F     +CR +  +RQ+HA     G  T+   AN L+  YA    LT A  LF  +  
Sbjct: 107 RLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPR 166

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFI------------------------------ 150
           R+ +SW+++ GG+ K  D     + F E                                
Sbjct: 167 RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDM 226

Query: 151 -RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
            R GM  D + L  V R C   +D+V GR +H  V++SGLD D  V ++L  MY +C  +
Sbjct: 227 RREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 286

Query: 210 DDARQLFDQMPT-----------------------------------RDLVTWTVMIGAN 234
            +   +   +P+                                    D+VT+   I + 
Sbjct: 287 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 346

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  +  G                   T ++ MY++CG +  +  +F      +    S
Sbjct: 347 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 406

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           AMI+AYG+HG G+KA++LF  M++    P+ +TF++LLYACSH+GL EEG+  F  M   
Sbjct: 407 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 466

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           + ++P VKHYTC+VDLLGR+G LDEA  LI SM +  D  +W  LL AC+  KN D+AE 
Sbjct: 467 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 526

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            AK ++E  P +   YVLLSN+ A + RW DV+++R  M    ++K PG +W+E++  IH
Sbjct: 527 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 586

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           QF  GD +HP+ +EI   L  +  K+   GY PD +  LHD+++E K  +L  HSEKLAI
Sbjct: 587 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 646

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AF  ++ PEG  IR+MKNLRVC DCH  IK +S +T R I+VRD +RFHHF+ G CSCRD
Sbjct: 647 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRD 706

Query: 576 YW 577
           YW
Sbjct: 707 YW 708


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 327/561 (58%), Gaps = 59/561 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q++QVHA ++  G   +  +  KL+ +    +A+   H LF  +   D   ++ ++   S
Sbjct: 24  QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTS 83

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K+   ++C   +R  +   +   +YT   VI++C D   + +G+ +H   + SG  +D +
Sbjct: 84  KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTY 143

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-------------------------------- 222
           V AALV  Y+KC  ++ ARQ+FD+MP +                                
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203

Query: 223 ---DLVTWTVMIGA-------------NKFL------LDVILGTAVIDMYAKCGSIDSAR 260
              D  T+  ++ A             ++++      L+V LGTA+I++Y++CG +  AR
Sbjct: 204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYACSHT 319
           E+FD+M++ NV +W+AMI+AYG HG G++A++LF  M      +PN +TFV++L AC+H 
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE---GL 376
           GLVEEG  ++  M   + + P V+H+ CMVD+LGRAG LDEA K I  +          L
Sbjct: 324 GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPAL 383

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W A+LGAC++H+N DL    AK L+  +P NPGH+V+LSN+YA +G+  +V+ IRD M R
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMR 443

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             L+K  G++ IEVENK + FS+GD +H ++ EIYR L TL  + +  GY P +   +H 
Sbjct: 444 NNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+EE K   L  HSEKLA+AFGL+ T +   I I+KNLR+C DCHS  K++S ++ R I 
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQIT 562

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD  RFHHF+ G+CSC DYW
Sbjct: 563 VRDKLRFHHFQNGSCSCLDYW 583


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 324/570 (56%), Gaps = 60/570 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-RD 122
           I S  S R +  ++ +  + +  G  T+ IV   L+   +  K + DA +LF+ M+E ++
Sbjct: 302 IKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKN 361

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            VSW+ M+ G  +          F +  R G++ + +T   ++         V    +H 
Sbjct: 362 VVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYP----VFVSEMHA 417

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
            V+K+  +    V  AL+D Y K     DA ++F+ +  +DL+ W+ M+           
Sbjct: 418 EVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEE 477

Query: 234 ---------------NKFLLDVILG-------------------------------TAVI 247
                          N+F    ++                                +A++
Sbjct: 478 AAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALV 537

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            MYAK G+IDSA E+F R ++++++SW++MI+ Y  HGQ KKAL++F  M    +  + +
Sbjct: 538 TMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAV 597

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+ ++ AC+H GLVE+G + F+SM +D  + P +KHY+CM+DL  RAG L++A+ +I  
Sbjct: 598 TFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINE 657

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M       +W  LLGA R+H+NV+L E+AA+ L+  QP++   YVLLSN+YA AG WQ+ 
Sbjct: 658 MPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQER 717

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
             +R LM +R++KK PG++WIEV+NK + F  GD THP S +IY  L  LS +L+ AGY 
Sbjct: 718 TNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQ 777

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PDT    HD+++E K   L  HSE+LAIAFGLIATP    I+I+KNLRVCGDCH+F K V
Sbjct: 778 PDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLV 837

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S + +R I+VRD+NRFHHF+ G CSC DYW
Sbjct: 838 SLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 177/386 (45%), Gaps = 65/386 (16%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVHA +V  G    + V N L+ +Y+    L DA  +F+ M+ RD V+W+ M+ G+ +  
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNG 274

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
             +  FE F +    G++    T   VI++C   +++ + +L+    LKSG   DQ V  
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 198 ALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGA----------------------- 233
           AL+   +KCK +DDA  LF  M   +++V+WT MI                         
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVK 394

Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
            N F    IL                          GTA++D Y K G+   A ++F+ +
Sbjct: 395 PNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-SHTGLVEEG 325
             K++++WSAM+A Y   G+ ++A  LF  ++   + PN  TF S++ AC S T   E+G
Sbjct: 455 EAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQG 514

Query: 326 LRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +  +     +A++  + +  C    +V +  + G +D A ++ +    E+D   W +++
Sbjct: 515 KQFHA-----YAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMI 568

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQN 407
                H     A+ A +   E Q +N
Sbjct: 569 SGYSQHGQ---AKKALEVFDEMQKRN 591



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 166/383 (43%), Gaps = 73/383 (19%)

Query: 66  SLLSCRNIFQI----------RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           S LSC  +F I          RQVH Q V  G + ++ V   L+ +Y   + + D   +F
Sbjct: 94  STLSC--VFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVF 151

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M ER+ VSW+ ++ G+S    +   +E F +    G+  + YT+  VI A  +   + 
Sbjct: 152 DEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVG 211

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           +G  +H +V+K G +    V  +L+ +Y++  ++ DAR +FD+M  RD VTW  MI    
Sbjct: 212 IGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYV 271

Query: 234 ------------NKFLL----------------------------------------DVI 241
                       NK  L                                        D I
Sbjct: 272 RNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQI 331

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
           + TA++   +KC  +D A  +F  M + KNV+SW+AMI+    +G   +A++LF  M   
Sbjct: 332 VITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V PN  T+ ++L       + E    +  + ++  +        T ++D   + G   +
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVG-----TALLDAYVKLGNTID 446

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
           A+K+ E +   KD   W A+L  
Sbjct: 447 AVKVFEIIEA-KDLMAWSAMLAG 468



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 150/359 (41%), Gaps = 60/359 (16%)

Query: 111 AHALFNGMKERDSV--SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
           AH LF+ +  R +     + ++  +S+          F   +   +Q D  TL  V   C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
               D  +GR +H   +K GL     V  +LVDMY K + ++D R++FD+M  R++V+WT
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 229 VMIGA------------------------NKFLLDVILGTAV------------------ 246
            ++                          N++ +  ++   V                  
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 247 ------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                       I +Y++ G +  AR++FD+M  ++ ++W++MIA Y  +GQ  +  ++F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGL-RLFSSMWDDFAVRPDVKHYTCMVDLLG 353
             M  + V P  +TF S++ +C+   L E  L +L            D    T ++  L 
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSCA--SLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           +   +D+AL L   M   K+   W A++  C  +   D A +   S + R+   P H+ 
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQA-VNLFSQMRREGVKPNHFT 399


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/544 (39%), Positives = 309/544 (56%), Gaps = 56/544 (10%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + N++  N L+  +  H  L  A  +F+ M ER+  +W+ MV G  +     N    FRE
Sbjct: 20  MRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFRE 79

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
               G   D +TL  V+R C   +    G+ +H  VLK G + +  V ++L  MY K   
Sbjct: 80  MHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGS 139

Query: 209 IDDARQLFDQMPTR-----------------------------------DLVTWTVMIGA 233
           + +  ++   M  R                                   D +T   +I +
Sbjct: 140 LGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISS 199

Query: 234 NKFLLDVILG-------------------TAVIDMYAKCGSI-DSAREIFDRMRQKNVIS 273
           +  L  +  G                   +++I MY+KCG + DS + + D     +V+ 
Sbjct: 200 SAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVL- 258

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           WS+MIAAYG+HG+G++A+ LF  M    +  N +TF+SLLYACSH GL E+G+  F  M 
Sbjct: 259 WSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMV 318

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           + + ++P ++HYTC+VDLLGR+G LDEA  +I SM +E D  +W  LL ACRIH+N D+A
Sbjct: 319 EKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMA 378

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
              A+ +L   PQ+   YVLLSN++A+A RW+DV+K+R  M  R +KK PG +W+EV+N+
Sbjct: 379 TRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNR 438

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           + QFS+GD +HP SEEI   L  L E+++L GY+PDT    HD D E K  +L +HSEKL
Sbjct: 439 VFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKL 498

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAFGL+  P G+ IR+MKNLR+C DCH  IK +S I  R IIVRD +RFHHF+ G CSC
Sbjct: 499 AIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSC 558

Query: 574 RDYW 577
            DYW
Sbjct: 559 GDYW 562



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           ISS      +FQ +Q+HA+ +  G  + + V + L+ +Y+    L D+       +  DS
Sbjct: 197 ISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDS 256

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR--KDIVMGRLIH 181
           V WS M+  +            F +  + G+  +  T   ++ AC     K+  MG    
Sbjct: 257 VLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMG-FFK 315

Query: 182 DIVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLL 238
            +V K GL   ++ + C  +VD+  +   +D+A  +   MP   D+V W  ++ A +   
Sbjct: 316 LMVEKYGLKPRLEHYTC--VVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHR 373

Query: 239 DVILGTAVIDMYAKCGSIDSA 259
           +  + T   +   +    DSA
Sbjct: 374 NADMATRTAEEILRLNPQDSA 394


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/504 (41%), Positives = 295/504 (58%), Gaps = 54/504 (10%)

Query: 81  AQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFI 140
           + I A G   +  +  K   +Y     +  A  +F  +    S  W+VM+ GF+    F+
Sbjct: 500 SNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFL 559

Query: 141 NCFETFREFIRCGMQLD-SYTLP------FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           +  E + + +  G++ D S  +P       V+ AC +   +  G   H  V+++G     
Sbjct: 560 SSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTG----- 614

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
                                                     F  D+++ TA++DMY+KC
Sbjct: 615 ------------------------------------------FEFDILVATAIMDMYSKC 632

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           GS+D AR +FD    K+++ WSAMIA+YG HG G+KA+DLF  M+ + V P+ +TF  +L
Sbjct: 633 GSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVL 692

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACSH+GL+EEG   F  M ++F +   + +Y CMVDLLGRAG+L EA+ LIE+M VE D
Sbjct: 693 SACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPD 752

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WG+LLGACRIH N+DLAE  A  L    P + G++VLLSN+YA   RW +V K+R +
Sbjct: 753 ASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKM 812

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M RR   KI G++ +E +N++H+F VGD +HPQ E++Y  L  L+  ++  GY+P T+F 
Sbjct: 813 MARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFV 872

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD++EE K   L  HSE+LAIAFGLI T  GT +RI KNLR+CGDCH+ IK +S I  R
Sbjct: 873 LHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNR 932

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
           VI+VRD +RFH FE G CSC DYW
Sbjct: 933 VILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 23/290 (7%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           +C N   + Q+H+Q+   G L +   A KL  +YA   +L  A  +F+     +   W+ 
Sbjct: 13  ACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNS 72

Query: 129 MVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            +  + +   +      F   I   G   D++T+P  ++AC   + + +G++IH    K+
Sbjct: 73  TLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKN 132

Query: 188 G-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK----------- 235
             +  D FV +ALV++Y+KC  + +A ++F++    D V WT M+   +           
Sbjct: 133 DEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALAL 192

Query: 236 ---------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                    F  D+ L  +++++YAK G    A  +F +M +K+VISWS MIA Y  +  
Sbjct: 193 FSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 252

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDD 335
             +AL+LF  M+  R  PN +T VS L AC+ +  +EEG ++   ++W D
Sbjct: 253 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKD 302



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 27/231 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L + N LL +YA       A  LF+ M E+D +SWS M+  ++           F E I
Sbjct: 205 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI 264

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
               + +S T+   ++AC   +++  G+ IH I +    D+  +V  AL+  YA+  +  
Sbjct: 265 EKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK--DVVSWV--ALLSGYAQNGMAY 320

Query: 211 DARQLFDQMPTR----DLVTWTVMIGANK-------------------FLLDVILGTAVI 247
            +  +F  M +     D V    ++ A+                    F  +V +G ++I
Sbjct: 321 KSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLI 380

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           ++Y+KCGS+  A ++F  M  ++V+ WS+MIAAYG HG+G +AL++F  M+
Sbjct: 381 ELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMI 431



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 137/321 (42%), Gaps = 63/321 (19%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           +++ V + L+ +Y+    + +A  +F   +  D+V W+ MV G+ +  D       F + 
Sbjct: 137 SDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQ- 195

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
                                            +V+    D D  +  +L+++YAK    
Sbjct: 196 ---------------------------------MVMMDCFDGDLPLVNSLLNLYAKTGCE 222

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA-------------------NKFLLDVILGTAVIDMY 250
             A  LF +MP +D+++W+ MI                      +F  + +   + +   
Sbjct: 223 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 282

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           A   +++  ++I      K+V+SW A+++ Y  +G   K++ +F  MLS  + P+ +  V
Sbjct: 283 AVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVV 342

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIE 366
            +L A S  G+ ++ L L       + VR     +V     +++L  + G L +A+KL +
Sbjct: 343 KILAASSELGIFQQALCLHG-----YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFK 397

Query: 367 SMSVEKDEGLWGALLGACRIH 387
            M V +D  +W +++ A  IH
Sbjct: 398 GMIV-RDVVIWSSMIAAYGIH 417



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 16/148 (10%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D VSW  ++ G+++          FR  +  G+Q D+  +  ++ A  +         +
Sbjct: 301 KDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCL 360

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H  V++SG + + FV A+L+++Y+KC  + DA +LF  M  RD+V W+ MI A       
Sbjct: 361 HGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAA------- 413

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                    Y   G    A EIFD+M Q
Sbjct: 414 ---------YGIHGRGGEALEIFDQMIQ 432



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 87/192 (45%), Gaps = 9/192 (4%)

Query: 64  ISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S LL+C N+  +R+    H+ ++  G   +++VA  ++ +Y+   +L  A  LF+    
Sbjct: 588 LSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAG 647

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D V WS M+  +          + F + ++ G++    T   V+ AC     +  G++ 
Sbjct: 648 KDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMY 707

Query: 181 HDIVLKS---GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKF 236
             ++ +       +  + C  +VD+  +   + +A  L + MP   D   W  ++GA + 
Sbjct: 708 FQLMTEEFVIARKLSNYAC--MVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRI 765

Query: 237 LLDVILGTAVID 248
             ++ L   + D
Sbjct: 766 HNNLDLAEKIAD 777


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/570 (35%), Positives = 328/570 (57%), Gaps = 59/570 (10%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH----KALTDAHALFNGMKERD 122
           L  C NI + +QVHA+ +      +   +   +     H     ++  A ++F G+ +  
Sbjct: 37  LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           +  ++ M+ G+  V  F      + E ++ G + D++T P +++AC   K I  G+ IH 
Sbjct: 97  TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
            V K GL+ D FV  +L++MY +C  ++ +  +F+++ ++   +W+ M+ A         
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216

Query: 234 ----------------------------------------NKFLL------DVILGTAVI 247
                                                   + FLL      ++I+ T+++
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMY KCG +D A  IF +M ++N +++SAMI+    HG+G+ AL +F  M+   + P+ +
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            +VS+L ACSH+GLV+EG R+F+ M  +  V P  +HY C+VDLLGRAG L+EAL+ I+S
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 396

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           + +EK++ +W   L  CR+ +N++L ++AA+ LL+    NPG Y+L+SN+Y+    W DV
Sbjct: 397 IPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDV 456

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           A+ R  +  + LK+ PG++ +E++ K H+F   D +HP+ +EIY+ML  +  +L+  GY 
Sbjct: 457 ARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PD    L +VDEE K   L  HS+K+AIAFGL+ TP G+ I+I +NLR+C DCH++ K +
Sbjct: 517 PDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKI 576

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S I  R I+VRD NRFH F+GG CSC+DYW
Sbjct: 577 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/586 (36%), Positives = 326/586 (55%), Gaps = 59/586 (10%)

Query: 48  MGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA 107
           +GP+  F    D    +++ L  R +   ++VHA ++    L    +  +LL  Y     
Sbjct: 46  LGPEMGF-HGYDA--LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 102

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L DA  + + M E++ VSW+ M+  +S+          F E +R   + + +T   V+ +
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C     + +G+ IH +++K   D   FV ++L+DMYAK   I +AR++F+ +P RD+V+ 
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222

Query: 228 TVMI-GANKFLLD----------------------------------------------- 239
           T +I G  +  LD                                               
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282

Query: 240 ------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                  +L  ++IDMY+KCG++  AR +FD M ++  ISW+AM+  Y  HG G++ L+L
Sbjct: 283 RELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL 342

Query: 294 FPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDL 351
           F +M    RV P+ +T +++L  CSH  + + GL +F  M   ++  +P  +HY C+VD+
Sbjct: 343 FRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDM 402

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LGRAGR+DEA + I+ M  +   G+ G+LLGACR+H +VD+ E   + L+E +P+N G+Y
Sbjct: 403 LGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNY 462

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           V+LSN+YA+AGRW DV  +R +M ++ + K PG +WI+ E  +H F   D THP+ EE+ 
Sbjct: 463 VILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVL 522

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             +  +S K++ AGY+PD +  L+DVDEE K   L  HSEKLA+ FGLIAT EG  IR+ 
Sbjct: 523 AKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVF 582

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+C DCH+F K  S +  R + +RD NRFH    G CSC DYW
Sbjct: 583 KNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 136/296 (45%), Gaps = 64/296 (21%)

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           E   E    G ++  +    ++ AC D++ +  G+ +H  ++K+      ++   L+  Y
Sbjct: 38  EALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFY 97

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ANKFLLD 239
            KC  ++DAR++ D+MP +++V+WT MI                          N+F   
Sbjct: 98  GKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFA 157

Query: 240 VIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQK 269
            +L                              G++++DMYAK G I  AREIF+ + ++
Sbjct: 158 TVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPER 217

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +V+S +A+IA Y   G  ++AL++F  + S  + PN +T+ SLL A S   L++ G +  
Sbjct: 218 DVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAH 277

Query: 330 SSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             +     +R ++  Y      ++D+  + G L  A +L ++M  E+    W A+L
Sbjct: 278 CHV-----LRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAML 327


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 332/569 (58%), Gaps = 56/569 (9%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL-YIYALHKALTDAHALFNGMKERDS 123
           S +L+   +  ++Q+HA+I+  G      +  KLL + YA    ++    LF  + + D+
Sbjct: 24  SIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDT 83

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
             +  ++   SK +        +R  +   +   +YT   VI++  D     +G  IH  
Sbjct: 84  FLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCH 143

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--------------------- 222
           V   G  +D +V AALV  YAK   +  AR++FD+MP +                     
Sbjct: 144 VYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEA 203

Query: 223 --------------------DLVTWTVMIGA-------------NKFLLDVILGTAVIDM 249
                                L++    +GA             N F L+V+LGTA+++M
Sbjct: 204 VELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNM 263

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y++CG++  ARE+FD M +KN+++W+AMI+ YG HG G +A++LF  M      PN +TF
Sbjct: 264 YSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTF 323

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           V++L AC+H GLV+EG ++F++M  ++ + P V+H  CMVD+LGRAG L+EA + I++ S
Sbjct: 324 VAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTS 383

Query: 370 V-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
             E    +W A+LGAC++HKN DL    A+ LL  +P+NPGHYV+LSN+YA AGR   V 
Sbjct: 384 PKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVE 443

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           KIR++M R RLKK  G++ I+V++K++ FS+GD +HP++ +IY  L  L  +   AGYIP
Sbjct: 444 KIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGYIP 503

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
            +   +H+V+EE +   L  HSEKLAIAFGL+ T  G  IRI+KNLR+C DCH+ IK++S
Sbjct: 504 ASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHTAIKYIS 563

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            I  R I VRD  RFHHF+ G+CSC+DYW
Sbjct: 564 IIANREINVRDRLRFHHFKDGSCSCQDYW 592


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 339/567 (59%), Gaps = 61/567 (10%)

Query: 72  NIFQIRQVHA-QIVAGGTLTNLIVANKLL-YIYALHKA--LTDAHALFNGMKERDSV-SW 126
           +I ++RQ+HA  I  G ++++  +   L+ Y+ +L     ++ AH +F+ +++  +V  W
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           + ++ G++++ + I+ F  +RE    G+ + D++T PF+I+A     D+ +G  IH +V+
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------- 230
           +SG     +V  +L+ +YA C  +  A ++FD+MP +DLV W  +               
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 231 --------------------------IGA-------NKFLLDVIL------GTAVIDMYA 251
                                     IGA       + +++ V L         ++D+YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFV 310
           +CG ++ A+ +FD M  KN +SW+++I     +G GK+A++LF  M S+  +LP  ITFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +LYACSH G+V+EG   F  M +++ + P ++H+ CMVDLL RAG++ +A + I+SM +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           + +  +W  LLGAC +H + DLAE A   +L+ +P + G YVLLSN+YA+  RW DV KI
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M R  +KK+PG + +EV N++H+F +GD +HPQS+ IY  L  ++ +L   GY+P  
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQI 508

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +    DV+EE K   +  HSEK+AIAF LI+TPE + I ++KNLRVC DCH  IK VS +
Sbjct: 509 SNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             R I+VRD +RFHHF+ G+CSC+DYW
Sbjct: 569 YNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/487 (42%), Positives = 286/487 (58%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L+    +L  Y+    L  A +LF GMKERD V W+VM+GG+++        + FR  +
Sbjct: 206 SLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML 265

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
                 +  T+  V+ AC     +  GR IH  +   G+ I+                  
Sbjct: 266 VAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQIN------------------ 307

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                        V +GTA+IDMY+KCGS++ AR +FDR+R K+
Sbjct: 308 -----------------------------VHVGTALIDMYSKCGSLEDARLVFDRIRDKD 338

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V++W++MI  Y  HG  + AL LF  M  +   P  ITF+ +L AC H GLVEEG   F 
Sbjct: 339 VVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFR 398

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M D + + P ++HY CMV+LLGRAG L+EA  L+++M++  D  LWG LLG CR+H N+
Sbjct: 399 LMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNI 458

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
            L E  AK L++++  N G YVLLSN+YA  G W+ VAK+R LM    ++K  G + IEV
Sbjct: 459 KLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEV 518

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK+H+F  G+  HP+S+EIY ML  ++  L+  GY P T+  LHD+ EE K  +L  HS
Sbjct: 519 DNKVHEFVAGERKHPKSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHS 578

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGLI+T  GT ++I+KNLRVC DCH+ +K +S IT R I++RD NRFHHFE G 
Sbjct: 579 EKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGL 638

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 639 CSCGDYW 645



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 168/325 (51%), Gaps = 22/325 (6%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F S +   +++  + Q+HA ++  G   N I+  KL   YA    L  +  +FN   E +
Sbjct: 50  FASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPN 109

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
             S+S ++    +   F   F  + + + CG++ +++T   V+++C     +  G+++H 
Sbjct: 110 VFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLESGKVLHC 165

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
             +K GL  D +V   LVD+YA+   +  ARQLFD+MP R LV+ T M+           
Sbjct: 166 QAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC--------- 216

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
                  Y+K G +D AR +F+ M++++V+ W+ MI  Y   G   ++L LF  ML ++ 
Sbjct: 217 -------YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKA 269

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           +PN +T +++L AC   G +E G R   S  ++  ++ +V   T ++D+  + G L++A 
Sbjct: 270 IPNEVTVLAVLSACGQLGALESG-RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDA- 327

Query: 363 KLIESMSVEKDEGLWGALLGACRIH 387
           +L+     +KD   W +++    +H
Sbjct: 328 RLVFDRIRDKDVVAWNSMIVGYAMH 352



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 24/217 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H+ I   G   N+ V   L+ +Y+   +L DA  +F+ ++++D V+W+ M+ G++  
Sbjct: 293 RWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMH 352

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL-KSGLD--IDQ 193
               +  + F E    G +    T   ++ AC     +  GR    ++  K G++  I+ 
Sbjct: 353 GFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEH 412

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA-------------NKFLLD 239
           + C  +V++  +   +++A  L   M    D V W  ++G               KFL+D
Sbjct: 413 YGC--MVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVD 470

Query: 240 VIL---GTAVI--DMYAKCGSIDSAREIFDRMRQKNV 271
             L   GT V+  +MYA  G+ +   ++   M++  +
Sbjct: 471 QKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGI 507


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/547 (38%), Positives = 316/547 (57%), Gaps = 56/547 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G  +++ V+N L+ +Y+    L DA  +F+ M+ RD VSW+ ++  + +  D
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCA 197
                  F+     G++ D  T+  +        D  + R I   V++   LD D  +  
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           ALV+MYAK   ++ A  +FDQ+P +D ++W  +                           
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTI 423

Query: 231 ---------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
                          +GA             N   LDV + T +ID+Y KCG ++ A  +
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  + +   + W+A+IA+ G HG+G++AL LF  ML+ RV  + ITFVSLL ACSH+GLV
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG + F  M  ++ ++P +KHY CMVDLLGRAG L++A +L+ +M ++ D  +WGALL 
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLS 603

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC+I+ N +L  +A+  LLE   +N G+YVLLSN+YAN  +W+ V K+R L   R L+K 
Sbjct: 604 ACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKT 663

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PGW+ + V +K   F  G+ THP+  EIY+ L  LS K++  GY+PD +F   D++E+ K
Sbjct: 664 PGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEK 723

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L SHSE+LAIAFG+I+TP  + IRI KNLRVCGDCH+  K++S I+ R I+VRD+NR
Sbjct: 724 EQILNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNR 783

Query: 563 FHHFEGG 569
           FHHF+ G
Sbjct: 784 FHHFKDG 790



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 207/442 (46%), Gaps = 71/442 (16%)

Query: 60  PKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           P F  F   L +C ++   ++VH  +   G   ++ VA  L+++Y+ +  L  AH +F  
Sbjct: 122 PDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVD 181

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  +D  SW+ M+ GF +  +              G+++D+ T+  ++  C    D++ G
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING 241

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN--- 234
            LIH  VLK GLD D FV  AL++MY+K   + DA+ +FDQM  RDLV+W  +I A    
Sbjct: 242 VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQN 301

Query: 235 -------KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR------------------QK 269
                  +F   + LG    D+     ++ S   IF ++                    K
Sbjct: 302 NDPSTALRFFKGMQLGGIRPDLL----TVVSLTSIFSQLSDQRISRSILGFVIRREWLDK 357

Query: 270 NVISWSAMIAAY---GY----------------------------HGQGKKALDLFPMML 298
           +V+  +A++  Y   GY                            +G   +A+D + MM 
Sbjct: 358 DVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMME 417

Query: 299 SSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
             R  +PN+ T+VS++ A SH G +++G+++ + +  + ++  DV   TC++DL G+ GR
Sbjct: 418 ECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGR 476

Query: 358 LDEALKLIESMSVEKDEGL-WGALLGACRIHKNVDLAEMAAKSLL-ERQPQNPGHYVLLS 415
           L++A+ L     + +D  + W A++ +  IH   + A    K +L ER   +   +V L 
Sbjct: 477 LEDAMSLF--YEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLL 534

Query: 416 NVYANAGRWQDVAKIRDLMTRR 437
           +  +++G   +  K  D+M + 
Sbjct: 535 SACSHSGLVDEGQKCFDIMQKE 556



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 195/449 (43%), Gaps = 100/449 (22%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           SC N+   +++HA ++  G   N++++ KL+ +Y  H  ++ + + F+ + +++  SW+ 
Sbjct: 31  SCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNS 90

Query: 129 MVGG---FSKVADFINCFETFREFIRCG---MQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           ++     F K  + +NC      F  CG   ++ D YT P +++AC     +V G+ +H 
Sbjct: 91  IISAYVRFGKYHEAMNCVNQL--FSMCGGGHLRPDFYTFPPILKAC---VSLVDGKKVHC 145

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------G 232
            V K G + D FV A+LV +Y++  V+D A ++F  MP +D+ +W  MI          G
Sbjct: 146 CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAG 205

Query: 233 ANKFLL-------------------------DVILGTAV-------------------ID 248
           A   L                          DVI G  +                   I+
Sbjct: 206 ALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALIN 265

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY+K G +  A+ +FD+M  ++++SW+++IAAY  +     AL  F  M    + P+ +T
Sbjct: 266 MYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLT 325

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDD--------FAVR-----PDVKHYTCMVDLLGRA 355
            VSL               +FS + D         F +R      DV     +V++  + 
Sbjct: 326 VVSL-------------TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL 372

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA--AKSLLER---QPQNPGH 410
           G ++ A  + + +   KD   W  L+     +    LA  A  A +++E       N G 
Sbjct: 373 GYMNCAHTVFDQLP-RKDTISWNTLVTG---YTQNGLASEAIDAYNMMEECRDTIPNQGT 428

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +V +   Y++ G  Q   KI   + +  L
Sbjct: 429 WVSIIPAYSHVGALQQGMKIHAKLIKNSL 457



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 2/206 (0%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  ++HA+++      ++ VA  L+ +Y     L DA +LF  +    SV W+ ++    
Sbjct: 444 QGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLG 503

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQ 193
                    + F++ +   ++ D  T   ++ AC     +  G+   DI+ K  G+    
Sbjct: 504 IHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSL 563

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
                +VD+  +   ++ A +L   MP + D   W  ++ A K   +  LGT   D   +
Sbjct: 564 KHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLE 623

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMI 278
             S +    +       N   W  +I
Sbjct: 624 VDSENVGYYVLLSNIYANTEKWEGVI 649


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/578 (38%), Positives = 320/578 (55%), Gaps = 57/578 (9%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S D     +++ SC  +  +   R V A     G + +  V N L+++YA    +  AH 
Sbjct: 168 SPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHV 227

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+ ++ +  ++W+ M+ G+ K  D+    E F+  +      D  TL  V  AC    D
Sbjct: 228 LFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGD 287

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL--------- 224
             +G+ I +   + G+   + +  ALVDMYAKC  +D AR+LFD+M +RD+         
Sbjct: 288 ANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISG 347

Query: 225 --------------------------VTWTVMIGANKFL-------------------LD 239
                                     VT   ++ A   L                   L 
Sbjct: 348 YTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLT 407

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           VILGTA++D YAKCG I  A + F+ M  +N  +W+A+I     +G+ ++AL+LF  ML 
Sbjct: 408 VILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLE 467

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           + + P  +TF+ +L ACSH  LVEEG R F+SM  D+ + P ++HY CMVDLLGRAG +D
Sbjct: 468 ANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLID 527

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA + I +M +E +  +W ALL AC +HKNV++ E A K ++   P + G+Y+LLSN YA
Sbjct: 528 EAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYA 587

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
           + G+W++ A +R  M  + ++KIPG + IE+E  I +F   DS HPQ  EIY  +  + E
Sbjct: 588 SVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIE 647

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
            +++ GYIP+T     DVDE  K  ++  HSEKLAIAFGL+ +  G  IR+ KNLRVC D
Sbjct: 648 NIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRPGATIRLSKNLRVCID 707

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CHS  K +S +  R IIVRD NRFHHF+ G CSC DYW
Sbjct: 708 CHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/554 (39%), Positives = 305/554 (55%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA+ +   + TN  V   LL +YA    L  A  +F+ M    +VSW+ ++  +    
Sbjct: 139 QLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAG 198

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D        R     GM+ DS+T   V+ AC    D+  G  +     + G+    FV  
Sbjct: 199 DLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVAT 258

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           A VD+Y KC  +  AR++FD+M  +D V W  M                           
Sbjct: 259 AAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRP 318

Query: 231 --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                         +GA             ++FL + +LGTA+IDMYAKCGS   A  +F
Sbjct: 319 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVF 378

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
            +MR+K++I W+AMI   G  G  K A  L   M  S V  N  TF+ LL +C+HTGL++
Sbjct: 379 QQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 438

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G R F +M   + + P ++HY C+VDLL RAG L EA +LI+ M +  +  + GALLG 
Sbjct: 439 DGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGG 498

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C+IH+N +LAE     L+  +P N G+YV+LSN+Y+N GRW+D AK+R  M  + ++K+P
Sbjct: 499 CKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVP 558

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
             +W+E E K+H+F VGD +HP S++IY+ L  L  +++  GY P T   + DV++E K 
Sbjct: 559 ACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKE 618

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLAIAF L+ T  G  IR+ KNLRVC DCH+ IK +S IT R IIVRD NRF
Sbjct: 619 HTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRF 678

Query: 564 HHFEGGACSCRDYW 577
           H F  G+CSC DYW
Sbjct: 679 HCFRDGSCSCNDYW 692



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 59/278 (21%)

Query: 160 TLPFVIR-ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           T P  ++ A R    +  G  +H   LK     +  V  +L+ +YA+C ++  A+++FD+
Sbjct: 119 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178

Query: 219 MPTRDLVTWTVMIGA---------------NKF--------------------LLDVILG 243
           MP    V+WT +I A               N F                    + D+  G
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 238

Query: 244 -------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                              TA +D+Y KCG +  ARE+FD+MR K+ ++W AM+  Y  +
Sbjct: 239 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 298

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVK 343
           G  ++ALDLF  M +  V P+       L AC+  G ++ G +    + WD+F   P + 
Sbjct: 299 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 358

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             T ++D+  + G   EA  + + M  +KD  +W A++
Sbjct: 359 --TALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMI 393


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 331/585 (56%), Gaps = 60/585 (10%)

Query: 47  QMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           ++ P  +  RS     FI++    +N+   R++HA + +     +  + N L+++Y   +
Sbjct: 46  ELAPTPRVYRS-----FITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCR 100

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
           ++ DA  +F+ M+ +D VSW+ ++ G+++    +         ++   + + +T   +++
Sbjct: 101 SVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD--- 223
           A     D   GR IH + +K G   D +V +AL+DMYA+C  +D A  +FD++ +++   
Sbjct: 161 AAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVS 220

Query: 224 -----------------LVTWTVMI---------------------GA------------ 233
                            L+T+  M+                     GA            
Sbjct: 221 WNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVI 280

Query: 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
            ++  L   +G  ++DMYAK GS+  AR++FDR+  K++++W++M+ A+  +G GK+A+ 
Sbjct: 281 KSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVS 340

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
            F  M  S V  N+ITF+ +L ACSH GLV+EG R F  M  ++ + P++ HY  +V LL
Sbjct: 341 HFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALL 399

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAG L+ AL  I  M +E    +WGALL ACR+HKN  + + AA  + E  P + G  V
Sbjct: 400 GRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPV 459

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LL N+YA+ G+W   A++R +M    +KK P  +W+E+EN +H F   D THPQ+EEIY+
Sbjct: 460 LLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYK 519

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
           M   +S+K+   GY+PD ++ L  VD++ K  NL  HSEKLA+AF LI  P G  IRIMK
Sbjct: 520 MWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMK 579

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           N+R+CGDCHS  K++S +  R I+VRD NRFHHF  G+CSC DYW
Sbjct: 580 NIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/524 (41%), Positives = 312/524 (59%), Gaps = 32/524 (6%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H  +V  G  +++ + +  +++YA    L DA  +F    E D V W+ M+ G+ K 
Sbjct: 152 RQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKC 210

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    F +       + S+ +  +I       ++   R + D + +     D+   
Sbjct: 211 GVLEAAKGLFAQMPV--KNIGSWNV--MINGLAKGGNLGDARKLFDEMSER----DEISW 262

Query: 197 AALVDMYAKCKVIDDARQLFDQM------PTRDLVTWTVM----IGA------------- 233
           +++VD Y       +A ++F QM      P R +++  +     IGA             
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
           N   LD +LGTA++DMYAKCG +D   E+F+ M+++ + +W+AMI     HG+ + AL+L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  +   R+ PN IT V +L AC+H G V++GLR+F +M + + V P+++HY CMVDLLG
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           R+G   EA  LI SM ++ +  +WGALLGACRIH N DLAE   K LLE +PQN G YVL
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVL 502

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           LSN+YA  GR+ DV+KIR LM  R +K +PG + +++   +H+F +GD +HPQ +EIYR 
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           L  + E+L++AG+ PDT+  L D+DEE K   +  HSEKLAIAFGLI T  G  I I+KN
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKN 622

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LRVC DCHS  K +S I  R IIVRD  R+HHF+ G CSC+D+W
Sbjct: 623 LRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 185/418 (44%), Gaps = 55/418 (13%)

Query: 41  NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANK 97
           +P  P+    +     S  P+  +  L   ++I  ++   Q+H  ++  G   +  V+  
Sbjct: 11  SPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGA 70

Query: 98  LLYIYA-LHKALTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           LL  YA  H +  D A  +F+ +   +   W++++ G  +          +   +    +
Sbjct: 71  LLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDAR 129

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA----------- 204
            + +T P + +AC   + +  GR IH  V+K G+  D  + +A + MYA           
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKM 189

Query: 205 -------------------KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
                              KC V++ A+ LF QMP +++ +W VMI              
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMING------------ 237

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
                AK G++  AR++FD M +++ ISWS+M+  Y   G+ K+AL++F  M      P 
Sbjct: 238 ----LAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPG 293

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           R    S+L ACS+ G +++G R   +     +++ D    T ++D+  + GRLD   ++ 
Sbjct: 294 RFILSSVLAACSNIGAIDQG-RWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVF 352

Query: 366 ESMSVEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           E M  E++   W A++G   IH +  D  E+ +K    R   N    V +    A+AG
Sbjct: 353 EEMK-EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAG 409



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 24/235 (10%)

Query: 61  KFFISSLLS-CRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F +SS+L+ C NI  I Q   VHA +       + ++   LL +YA    L     +F 
Sbjct: 294 RFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFE 353

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            MKER+  +W+ M+GG +      +  E F +     M+ +  TL  V+ AC     +  
Sbjct: 354 EMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDK 413

Query: 177 G-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA- 233
           G R+   +    G+D +      +VD+  +  +  +A  L + MP + +   W  ++GA 
Sbjct: 414 GLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGAC 473

Query: 234 ---NKFLLDVILGTAVIDM--------------YAKCGSIDSAREIFDRMRQKNV 271
                F L   +G  ++++              YAK G  D   +I   M+ + +
Sbjct: 474 RIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/602 (36%), Positives = 315/602 (52%), Gaps = 85/602 (14%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           + F     +CR +  +RQ+HA     G  T+   AN L+  YA    LT A  LF  +  
Sbjct: 45  RLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPR 104

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFI------------------------------ 150
           R+ +SW+++ GG+ K  D     + F E                                
Sbjct: 105 RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDM 164

Query: 151 -RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
            R GM  D + L  V R C   +D+V GR +H  V++SGLD D  V ++L  MY +C  +
Sbjct: 165 RREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 224

Query: 210 DDARQLFDQMPT-----------------------------------RDLVTWTVMIGAN 234
            +   +   +P+                                    D+VT+   I + 
Sbjct: 225 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 284

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  +  G                   T ++ MY++CG +  +  +F      +    S
Sbjct: 285 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 344

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           AMI+AYG+HG G+KA++LF  M++    P+ +TF++LLYACSH+GL EEG+  F  M   
Sbjct: 345 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 404

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           + ++P VKHYTC+VDLLGR+G LDEA  LI SM +  D  +W  LL AC+  KN D+AE 
Sbjct: 405 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 464

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            AK ++E  P +   YVLLSN+ A + RW DV+++R  M    ++K PG +W+E++  IH
Sbjct: 465 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 524

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           QF  GD +HP+ +EI   L  +  K+   GY PD +  LHD+++E K  +L  HSEKLAI
Sbjct: 525 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 584

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AF  ++ PEG  IR+MKNLRVC DCH  IK +S +T R I+VRD +RFHHF+ G CSCRD
Sbjct: 585 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRD 644

Query: 576 YW 577
           YW
Sbjct: 645 YW 646


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/564 (40%), Positives = 316/564 (56%), Gaps = 62/564 (10%)

Query: 71  RNIFQIRQVHAQI--VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           R I +  + H Q+   +GG    + V+N L+ +YA    L DA  LF+ M ER+ V+W+ 
Sbjct: 92  RLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTT 151

Query: 129 MVGGFSKVADFINCFETFREFI---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           +V   +         E  R  +   R G+  ++YT   V+ AC     +     +H   +
Sbjct: 152 VVAALANADGRKE--EALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAA---LHASTV 206

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------- 232
           K GLD D FV ++L+D Y K   +D  R++FD+M TRDLV W  +I              
Sbjct: 207 KVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIE 266

Query: 233 -----------AN----------------------------KFLLDVILGTAVIDMYAKC 253
                      AN                            K+  D+IL  A++DMY KC
Sbjct: 267 LFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYCKC 326

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           GS++ A  +F RM Q++VISWS MI+    +G+  +AL +F +M S  V PNRIT V +L
Sbjct: 327 GSLEDAEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVL 386

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
           +ACSH GLVE+G   F SM   F ++P+ +H+ CMVDLLGRAG+LDEA++ I  M++E D
Sbjct: 387 FACSHAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPD 446

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +W  LLGACR+HK+ +LA  AA+ +L+ +P + G  VLLSN YA+  +W D  K    
Sbjct: 447 AVIWRTLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKA 506

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M  R +KK PG +WIE+E  +H F  GD +HP S+ I + L  L  ++   GY+P T F 
Sbjct: 507 MRDRGMKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFV 566

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           L D+  E K   L  HSEK+AIAFG +    G  IRIMKNLR+CGDCH+F K VS    R
Sbjct: 567 LQDLAIEQKEDLLKYHSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGR 626

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
           +II+RD  RFHHF+ GACSC DYW
Sbjct: 627 MIIIRDPVRFHHFQDGACSCGDYW 650



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 123/285 (43%), Gaps = 64/285 (22%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIV--------LKSGLDIDQFVCAALVDMYAKCKV 208
           D  +L  +++ C        GRLIH  V           G     FV  +LV MYAK  +
Sbjct: 71  DPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGL 130

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGA-------------------------NKFLLDVILG 243
           +DDA +LFD+MP R++VTWT ++ A                         N +    +LG
Sbjct: 131 LDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLG 190

Query: 244 ---------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                      +++ID Y K G +D  R +FD M  ++++ W++
Sbjct: 191 ACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNS 250

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +IA +   G G  A++LF  M  +    N+ T  S+L AC+   ++E G ++ + +    
Sbjct: 251 IIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV---L 307

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
               D+  +  ++D+  + G L++A  L   M  ++D   W  ++
Sbjct: 308 KYERDLILHNALLDMYCKCGSLEDAEALFHRMP-QRDVISWSTMI 351



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S +     S L +C  +  +   RQVHA ++      +LI+ N LL +Y    +L DA A
Sbjct: 277 SANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEA 334

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+ M +RD +SWS M+ G ++          F      G+  +  T+  V+ AC     
Sbjct: 335 LFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGL 394

Query: 174 IVMGRLIHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI 231
           +  G      + K  G+  ++     +VD+  +   +D+A +    M    D V W  ++
Sbjct: 395 VEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLL 454

Query: 232 GA 233
           GA
Sbjct: 455 GA 456


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/504 (42%), Positives = 301/504 (59%), Gaps = 52/504 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            +HA I   G   N  V N +L  YA    + L  A  +F+ M ERD VSW+ M+  +++
Sbjct: 219 SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQ 277

Query: 136 VADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                     + + +  G  ++ ++  L  V+ AC     I  G+ IH+ V++ GL+ + 
Sbjct: 278 NGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENV 337

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           +V                                               GT+++DMY+KC
Sbjct: 338 YV-----------------------------------------------GTSIVDMYSKC 350

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ A   F ++++KN++SWSAMI  YG HG+G++AL++F  M  S + PN ITF+S+L
Sbjct: 351 GRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVL 410

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACSH GL++EG   +++M  +F +   V+HY CMVDLLGRAG LDEA  LI+ M V+ D
Sbjct: 411 AACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPD 470

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WGALL ACRIHKNV+LAEM+ K L E    N G+YVLLSN+YA A  W+DV +IR L
Sbjct: 471 AAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLL 530

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           +  RR++K PG++  E++ KI+ F VGD +HPQ  EIY  L  L E+++ AGY+P+T   
Sbjct: 531 VKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSV 590

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD+DEE K   L  HSEKLA+AF L+ +   + I I+KNLRVC DCH+ +K ++ IT R
Sbjct: 591 LHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITER 650

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            II+RD  RFHHF+ G CSCRDYW
Sbjct: 651 EIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 10/195 (5%)

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS- 255
           A++VD  A       + ++ D+  T  L      IG   F  +  +   ++D YAK GS 
Sbjct: 193 ASVVDEAAALVAFSASARVPDRGVTASLHALIAKIG---FERNAGVVNTMLDSYAKGGSR 249

Query: 256 -IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVLPNRITFVSL 312
            ++ AR++FD M +++V+SW++MIA Y  +G   +A+ L+  ML+    +  N +   ++
Sbjct: 250 DLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAV 308

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC+H G ++ G R+ + +     +  +V   T +VD+  + GR++ A +    +  EK
Sbjct: 309 LLACAHAGAIQTGKRIHNQVV-RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EK 366

Query: 373 DEGLWGALLGACRIH 387
           +   W A++    +H
Sbjct: 367 NILSWSAMITGYGMH 381



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           LL+C +   I   +++H Q+V  G   N+ V   ++ +Y+    +  A   F  +KE++ 
Sbjct: 309 LLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 368

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SWS M+ G+          E F E  R G++ +  T   V+ AC     +  GR  ++ 
Sbjct: 369 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 428

Query: 184 VLKS-GLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLD 239
           + +  G++  ++ + C  +VD+  +   +D+A  L  +M  + D   W  ++ A +   +
Sbjct: 429 MKQEFGIEAGVEHYGC--MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKN 486

Query: 240 VILG 243
           V L 
Sbjct: 487 VELA 490


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 316/559 (56%), Gaps = 54/559 (9%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           + Q +  HAQI+  G  T+L+ +N L+ +Y+   ++  A  +F+ M  R  VSW+ M+G 
Sbjct: 80  LLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGS 139

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            ++  +     +   +  R G     +T+  V+ AC  +  +   +L+H   +K+ +D++
Sbjct: 140 LTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLN 199

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------- 233
            FV  AL+D+YAKC ++ DA  +F+ MP R +VTW+ M                      
Sbjct: 200 VFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWE 259

Query: 234 -----NKFLL------------------------------DVILGTAVIDMYAKCGSIDS 258
                ++FL+                              ++ + +++IDMYAKCG I+ 
Sbjct: 260 TGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEE 319

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           + ++F  + ++NV+ W+AMI+    H +  + + LF  M    + PN +TFVS+L AC H
Sbjct: 320 SYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGH 379

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLV++G + F  M  +  + P+V HY+CMVD L RAG++ EA  LI  +       +WG
Sbjct: 380 MGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWG 439

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           +LL +CR H N++LAE+AAK L + +P N G+Y+LLSN+YA  G+W +VAK+R L+    
Sbjct: 440 SLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESD 499

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           +KK  G +WIE+++K+H F VG+  HP+  EIY  L  + ++L+  GY  +T  +LH V 
Sbjct: 500 VKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVG 559

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           E +K   L  HSEKLA   GL+  P    IRIMKNLR+CGDCHSF+K  S    R +IVR
Sbjct: 560 ESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVR 619

Query: 559 DANRFHHFEGGACSCRDYW 577
           D NRFHHF+ G CSC D+W
Sbjct: 620 DTNRFHHFKNGCCSCGDFW 638



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 149/330 (45%), Gaps = 59/330 (17%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C  RK ++ G+  H  +L  GL  D      L++MY+KC  +D ARQ+FD+MP+R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
           LV+W  MIG+                        ++F +  +L                 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                         TA++D+YAKCG +  A  +F+ M  ++V++WS+M A Y  +   ++
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL LF     + +  ++    S++ AC+    + EG ++ +++        ++   + ++
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQV-NALLSKSGFCSNIFVASSLI 308

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           D+  + G ++E+ K+   +  +++  LW A++     H    L  M     +++   +P 
Sbjct: 309 DMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHAR-SLEVMILFEKMQQMGLSPN 366

Query: 410 HYVLLSNVYA--NAGRWQDVAKIRDLMTRR 437
               +S + A  + G  +   K  DLMT+ 
Sbjct: 367 DVTFVSVLSACGHMGLVKKGQKYFDLMTKE 396



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 84/165 (50%), Gaps = 5/165 (3%)

Query: 61  KFFISSLL-SCRNI---FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F +SS++ +C  +    + +QV+A +   G  +N+ VA+ L+ +YA    + +++ +F 
Sbjct: 266 QFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFR 325

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +++R+ V W+ M+ G S+ A  +     F +  + G+  +  T   V+ AC     +  
Sbjct: 326 DVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKK 385

Query: 177 GRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           G+   D++ K   L  + F  + +VD  ++   I +A  L  ++P
Sbjct: 386 GQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLP 430


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/530 (40%), Positives = 310/530 (58%), Gaps = 49/530 (9%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P  +FT +   K  + S LS   + + +++HA I+  G   N+ V   LL +YA   +++
Sbjct: 176 PSDRFTYTFVLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVS 235

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL--DSYTLPFVIRA 167
            A+++F  M  ++ VSWS M+  F+K    +   E F+  +        +S T+  V++A
Sbjct: 236 YANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQA 295

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C     +  G+LIH  +L+ GLD                                     
Sbjct: 296 CAGLAALEQGKLIHGYILRRGLD------------------------------------- 318

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                    +L V+   A+I MY +CG I   + +FD M+ ++V+SW+++I+ YG HG G
Sbjct: 319 --------SILPVL--NALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFG 368

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           KKA+ +F  M+     P+ I+F+++L ACSH GLVEEG  LF SM   + + P ++HY C
Sbjct: 369 KKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYAC 428

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVDLLGRA RLDEA+KLIE M  E    +WG+LLG+CRIH NV+LAE A+  L E +P+N
Sbjct: 429 MVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRN 488

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            G+YVLL+++YA A  W +   +  L+  R L+K+PG +WIEV+ K++ F   D  +PQ 
Sbjct: 489 AGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQI 548

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           EEI+ +LV LS +++  GY+P TN  L+D+DEE K   +  HSEKLA+AFGLI T +G  
Sbjct: 549 EEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGET 608

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IRI KNLR+C DCH+  K +S    R I+VRD NRFHHF+ G CSC DYW
Sbjct: 609 IRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 153/371 (41%), Gaps = 97/371 (26%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +I +C  +  +  G  +H  ++ SG D D F+   L++MY +   ID AR++FD+ 
Sbjct: 80  TFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDET 139

Query: 220 PTRDLVTWT------VMIGANKFLLDV------------------ILGTAVI-------- 247
             R +  W        M+G  K LLD+                  +L   V+        
Sbjct: 140 RERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSPL 199

Query: 248 --------------------------DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                     D+YAK GS+  A  +F  M  KN +SWSAMIA +
Sbjct: 200 QKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACF 259

Query: 282 GYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEG-------------- 325
             +    KAL+LF +M+  +   +PN +T V++L AC+    +E+G              
Sbjct: 260 AKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDS 319

Query: 326 -----------------LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
                            + +   ++D+   R DV  +  ++ + G  G   +A+++ E+M
Sbjct: 320 ILPVLNALITMYGRCGEILMGQRVFDNMKNR-DVVSWNSLISIYGMHGFGKKAIQIFENM 378

Query: 369 SVEKDEGLWGA---LLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGR 423
             +     + +   +LGAC     V+  ++  +S+L +   +PG  HY  + ++   A R
Sbjct: 379 IHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANR 438

Query: 424 WQDVAKIRDLM 434
             +  K+ + M
Sbjct: 439 LDEAIKLIEDM 449


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/487 (42%), Positives = 279/487 (57%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  Y     +  A   F+ M +RD VSW+ ++ G+++   +      F E  
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           + G  L+  T    +  C D   + +G+ IH   +K G     FV               
Sbjct: 387 QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFV--------------- 431

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCGSID A + F+ + +K+
Sbjct: 432 --------------------------------GNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ M+A Y  HG G++AL +F  M ++ V P+ IT V +L ACSHTGL++ G   F 
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  D+ V P  KHYTCM+DLLGRAGRL+EA  LI +M  +     WGALLGA RIH N 
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L E AA+ + + +PQN G YVLLSN+YA +GRW D  K+R  M    ++K+PG++W+EV
Sbjct: 580 ELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEV 639

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NKIH FSVGD +HP+ E IY  L  L  K+   GY+  T   LHDV+EE K   L  HS
Sbjct: 640 QNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHS 699

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+AFG++  P G  IR+MKNLRVC DCHS IKH+S I  R+II+RD++RFHHF  G 
Sbjct: 700 EKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGF 759

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 760 CSCGDYW 766



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 53/283 (18%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------GANKFLLD------VIL 242
           A++  Y +    + AR LFDQMP RDL +W VM+         G  + L D      V+ 
Sbjct: 85  AMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVS 144

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP------- 295
             +++  YA+ G +D ARE+FD M +KN ISW+ ++AAY ++G+ ++A  LF        
Sbjct: 145 WNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL 204

Query: 296 --------------------MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
                                +     + + I++ +++   +  G + +  RLF    D+
Sbjct: 205 ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF----DE 260

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
              R DV  +T MV    + G LDEA    + M  EK+E  + A++      K +D+   
Sbjct: 261 SPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAGYVQTKKMDI--- 315

Query: 396 AAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            A+ L E  P +N   +  +   Y   G      K  D+M +R
Sbjct: 316 -ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR 357



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 42/339 (12%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L   N +L  Y  +  L DA  LF+ M E+D VSW+ ++ G+++        E F    
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL---KSGLDIDQFVCAALVDMYAKCK 207
               + +S +   ++ A      +  GR+    +L   KS  D+  + C  L+  + + K
Sbjct: 170 ----EKNSISWNGLLAAY-----VHNGRIEEACLLFESKSDWDLISWNC--LMGGFVRKK 218

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMYAK 252
            + DAR LFD+MP RD ++W  MI                      DV   TA++  Y +
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQ 278

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
            G +D A+  FD M +KN +S++AMIA Y       K +D+   +  S    N  ++ ++
Sbjct: 279 NGMLDEAKTFFDEMPEKNEVSYNAMIAGY----VQTKKMDIARELFESMPCRNISSWNTM 334

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           +      G + +  + F     D   + D   +  ++    ++G  +EAL +   + +++
Sbjct: 335 ITGYGQIGDIAQARKFF-----DMMPQRDCVSWAAIIAGYAQSGHYEEALNMF--VEIKQ 387

Query: 373 D-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           D E L  A  G C +    D+A +     +  Q    G+
Sbjct: 388 DGESLNRATFG-CALSTCADIAALELGKQIHGQAVKMGY 425



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT 90
           GH +  +N  V ++     Q   S++   F  +L +C +I  +   +Q+H Q V  G  T
Sbjct: 373 GHYEEALNMFVEIK-----QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT 427

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
              V N LL +Y    ++ +A+  F G++E+D VSW+ M+ G+++          F    
Sbjct: 428 GCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK 487

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G++ D  T+  V+ AC     +  G    + +    G+         ++D+  +   +
Sbjct: 488 TAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRL 547

Query: 210 DDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           ++A+ L   MP +    +W  ++GA++   +  LG    +M  K
Sbjct: 548 EEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D++     I  + + G  DSA  +F+ M +++ +S++AMI+ Y  + +   A +LF  M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              +    +     +  C     + +  RLF     D     DV  +  ++    + G +
Sbjct: 108 ERDLFSWNVMLTGYVRNCR----LGDARRLF-----DLMPEKDVVSWNSLLSGYAQNGYV 158

Query: 359 DEALKLIESMSVEKDEGLWGALLGA 383
           DEA ++ ++M  EK+   W  LL A
Sbjct: 159 DEAREVFDNMP-EKNSISWNGLLAA 182


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/504 (42%), Positives = 301/504 (59%), Gaps = 52/504 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            +HA I   G   N  V N +L  YA    + L  A  +F+ M ERD VSW+ M+  +++
Sbjct: 218 SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQ 276

Query: 136 VADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                     + + +  G  ++ ++  L  V+ AC     I  G+ IH+ V++ GL+ + 
Sbjct: 277 NGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENV 336

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           +V                                               GT+++DMY+KC
Sbjct: 337 YV-----------------------------------------------GTSIVDMYSKC 349

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ A   F ++++KN++SWSAMI  YG HG+G++AL++F  M  S + PN ITF+S+L
Sbjct: 350 GRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVL 409

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACSH GL++EG   +++M  +F +   V+HY CMVDLLGRAG LDEA  LI+ M V+ D
Sbjct: 410 AACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPD 469

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WGALL ACRIHKNV+LAEM+ K L E    N G+YVLLSN+YA A  W+DV +IR L
Sbjct: 470 AAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLL 529

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           +  RR++K PG++  E++ KI+ F VGD +HPQ  EIY  L  L E+++ AGY+P+T   
Sbjct: 530 VKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSV 589

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD+DEE K   L  HSEKLA+AF L+ +   + I I+KNLRVC DCH+ +K ++ IT R
Sbjct: 590 LHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITER 649

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            II+RD  RFHHF+ G CSCRDYW
Sbjct: 650 EIIIRDLQRFHHFKDGLCSCRDYW 673



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 101/195 (51%), Gaps = 10/195 (5%)

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS- 255
           A++VD  A       + ++ D+  T  L      IG   F  +  +   ++D YAK GS 
Sbjct: 192 ASVVDEAAALVAFSASARVPDRGVTASLHALIAKIG---FERNAGVVNTMLDSYAKGGSR 248

Query: 256 -IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVLPNRITFVSL 312
            ++ AR++FD M +++V+SW++MIA Y  +G   +A+ L+  ML+    +  N +   ++
Sbjct: 249 DLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAV 307

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC+H G ++ G R+ + +     +  +V   T +VD+  + GR++ A +    +  EK
Sbjct: 308 LLACAHAGAIQTGKRIHNQVV-RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK-EK 365

Query: 373 DEGLWGALLGACRIH 387
           +   W A++    +H
Sbjct: 366 NILSWSAMITGYGMH 380



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 87/184 (47%), Gaps = 9/184 (4%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           LL+C +   I   +++H Q+V  G   N+ V   ++ +Y+    +  A   F  +KE++ 
Sbjct: 308 LLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 367

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SWS M+ G+          E F E  R G++ +  T   V+ AC     +  GR  ++ 
Sbjct: 368 LSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNA 427

Query: 184 VLKS-GLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLD 239
           + +  G++  ++ + C  +VD+  +   +D+A  L  +M  + D   W  ++ A +   +
Sbjct: 428 MKQEFGIEAGVEHYGC--MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKN 485

Query: 240 VILG 243
           V L 
Sbjct: 486 VELA 489


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/487 (42%), Positives = 279/487 (57%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  Y     +  A   F+ M +RD VSW+ ++ G+++   +      F E  
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           + G  L+  T    +  C D   + +G+ IH   +K G     FV               
Sbjct: 387 QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFV--------------- 431

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCGSID A + F+ + +K+
Sbjct: 432 --------------------------------GNALLAMYFKCGSIDEANDTFEGIEEKD 459

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ M+A Y  HG G++AL +F  M ++ V P+ IT V +L ACSHTGL++ G   F 
Sbjct: 460 VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFY 519

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  D+ V P  KHYTCM+DLLGRAGRL+EA  LI +M  +     WGALLGA RIH N 
Sbjct: 520 SMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNT 579

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L E AA+ + + +PQN G YVLLSN+YA +GRW D  K+R  M    ++K+PG++W+EV
Sbjct: 580 ELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEV 639

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NKIH FSVGD +HP+ E IY  L  L  K+   GY+  T   LHDV+EE K   L  HS
Sbjct: 640 QNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHS 699

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+AFG++  P G  IR+MKNLRVC DCHS IKH+S I  R+II+RD++RFHHF  G 
Sbjct: 700 EKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGF 759

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 760 CSCGDYW 766



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/261 (36%), Positives = 140/261 (53%), Gaps = 57/261 (21%)

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           +TGL++ G   F  M ++++V P  KHYTCM+DLLGR  RL+E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           GALLGA RIH N +L E AA+   +  PQN G                 ++K+RD+    
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMRDV---- 857

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            ++K+PG++W EV+NKIH FSVG              + LS + E  G++ + + ++ + 
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG--------------LFLSRERENIGFLEELDLKMRER 903

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN-LRVCGDCHSFIKHVSAITRRVII 556
           +EE +   L   SE LA A G++  P G   R+MK  + VC DC S IKH+S I  R+I 
Sbjct: 904 EEEKER-TLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLIT 962

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RD++RF+      CSC +YW
Sbjct: 963 LRDSHRFNE---SICSCGEYW 980



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 127/283 (44%), Gaps = 53/283 (18%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------GANKFLLD------VIL 242
           A++  Y +    + AR LFDQMP RDL +W VM+         G  + L D      V+ 
Sbjct: 85  AMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVS 144

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP------- 295
             +++  YA+ G +D ARE+FD M +KN ISW+ ++AAY ++G+ ++A  LF        
Sbjct: 145 WNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL 204

Query: 296 --------------------MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
                                +     + + I++ +++   +  G + +  RLF    D+
Sbjct: 205 ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLF----DE 260

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
              R DV  +T MV    + G LDEA    + M  EK+E  + A++      K +D+   
Sbjct: 261 SPTR-DVFTWTAMVSGYVQNGMLDEAKTFFDEMP-EKNEVSYNAMIAGYVQTKKMDI--- 315

Query: 396 AAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            A+ L E  P +N   +  +   Y   G      K  D+M +R
Sbjct: 316 -ARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQR 357



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 42/339 (12%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L   N +L  Y  +  L DA  LF+ M E+D VSW+ ++ G+++        E F    
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL---KSGLDIDQFVCAALVDMYAKCK 207
               + +S +   ++ A      +  GR+    +L   KS  D+  + C  L+  + + K
Sbjct: 170 ----EKNSISWNGLLAAY-----VHNGRIEEACLLFESKSDWDLISWNC--LMGGFVRKK 218

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMYAK 252
            + DAR LFD+MP RD ++W  MI                      DV   TA++  Y +
Sbjct: 219 KLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQ 278

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
            G +D A+  FD M +KN +S++AMIA Y       K +D+   +  S    N  ++ ++
Sbjct: 279 NGMLDEAKTFFDEMPEKNEVSYNAMIAGY----VQTKKMDIARELFESMPCRNISSWNTM 334

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           +      G + +  + F     D   + D   +  ++    ++G  +EAL +   + +++
Sbjct: 335 ITGYGQIGDIAQARKFF-----DMMPQRDCVSWAAIIAGYAQSGHYEEALNMF--VEIKQ 387

Query: 373 D-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           D E L  A  G C +    D+A +     +  Q    G+
Sbjct: 388 DGESLNRATFG-CALSTCADIAALELGKQIHGQAVKMGY 425



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 101/224 (45%), Gaps = 10/224 (4%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT 90
           GH +  +N  V ++     Q   S++   F  +L +C +I  +   +Q+H Q V  G  T
Sbjct: 373 GHYEEALNMFVEIK-----QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT 427

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
              V N LL +Y    ++ +A+  F G++E+D VSW+ M+ G+++          F    
Sbjct: 428 GCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMK 487

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G++ D  T+  V+ AC     +  G    + +    G+         ++D+  +   +
Sbjct: 488 TAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRL 547

Query: 210 DDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           ++A+ L   MP +    +W  ++GA++   +  LG    +M  K
Sbjct: 548 EEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 10/145 (6%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D++     I  + + G  DSA  +F+ M +++ +S++AMI+ Y  + +   A +LF  M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              +    +     +  C     + +  RLF     D     DV  +  ++    + G +
Sbjct: 108 ERDLFSWNVMLTGYVRNCR----LGDARRLF-----DLMPEKDVVSWNSLLSGYAQNGYV 158

Query: 359 DEALKLIESMSVEKDEGLWGALLGA 383
           DEA ++ ++M  EK+   W  LL A
Sbjct: 159 DEAREVFDNMP-EKNSISWNGLLAA 182


>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 310/558 (55%), Gaps = 85/558 (15%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKER----DSVSWSVMVGGFSKVADFINCFETF 146
           +++  N ++  Y+ +    DA +LF  M+E     D V+WS ++ G+++        + F
Sbjct: 104 DVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVF 163

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL------DIDQF-VCAAL 199
           R+   C  + +  TL  ++ AC     ++ G+  H   +K  L      D D   V  AL
Sbjct: 164 RQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINAL 223

Query: 200 VDMYAKCKVIDDARQLFDQM--PTRDLVTWTVMIGA------------------------ 233
           +DMYAKCK ++ AR +FD++    RD+VTWTVMIG                         
Sbjct: 224 IDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCI 283

Query: 234 --NKFLLDVIL--------------------------------GTAVIDMYAKCGSIDSA 259
             N F +  +L                                   +IDMY+K G +D+A
Sbjct: 284 VPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA 343

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           + +FD M ++N +SW++++  YG HG                ++ + ITF+ +LYACSH+
Sbjct: 344 QVVFDSMSKRNAVSWTSLLTGYGMHGAA--------------LVLDGITFLVVLYACSHS 389

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           G+V+ G+ LF  M  DF V P V+HY CM DL GRAGRL EA +LI  MS+E    +W A
Sbjct: 390 GMVDRGIDLFYRMSKDFVVDPGVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIA 449

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LL ACR H N +LAE AAK LLE +  N G Y LLSN+YANA RW+DVA+IR LM R  +
Sbjct: 450 LLSACRTHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGI 509

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK PGW+W++    +  F VGD TH QS++IY  L  L ++++  GY+P TNF LHDVD+
Sbjct: 510 KKRPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIKAIGYVPQTNFSLHDVDD 569

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E K   L  HSEKLA+A+ ++  P G  IRI KNLR+CGD HS I ++S I    II+RD
Sbjct: 570 EEKGDQLLEHSEKLALAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRD 629

Query: 560 ANRFHHFEGGACSCRDYW 577
           ++RFH F+ G+CSC+ YW
Sbjct: 630 SSRFHQFKNGSCSCKGYW 647



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 77/136 (56%), Gaps = 20/136 (14%)

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           FV  ALVDMYAKC  ++DA ++F++M  +D+VTW  M+                  Y++ 
Sbjct: 75  FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTG----------------YSQN 118

Query: 254 GSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           G  + A  +F +MR++    +V++WS++I+ Y   G G +A+D+F  M   R  PN +T 
Sbjct: 119 GRFEDALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTL 178

Query: 310 VSLLYACSHTGLVEEG 325
           +SLL AC+  G +  G
Sbjct: 179 MSLLSACASVGALLHG 194



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 80/140 (57%), Gaps = 6/140 (4%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPT-----RDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           ++V +Y+ C V +DA  LF +M        D V    ++  + FL    +G A++DMYAK
Sbjct: 28  SIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSGFL-GFFVGNALVDMYAK 86

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG ++ A ++F+RMR K+V++W+AM+  Y  +G+ + AL LF  M   ++  + +T+ S+
Sbjct: 87  CGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIELDVVTWSSV 146

Query: 313 LYACSHTGLVEEGLRLFSSM 332
           +   +  G   E + +F  M
Sbjct: 147 ISGYAQRGFGCEAMDVFRQM 166



 Score = 45.4 bits (106), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 34/190 (17%)

Query: 58  VDPKFFISS-LLSCRNIFQIR---QVHAQIVAGGTLTN--LIVANKLLYIYALHKALTDA 111
           V   F IS  L++C  +  ++   Q+HA ++    + +  L VAN L+ +Y+    +  A
Sbjct: 284 VPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTA 343

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR-- 169
             +F+ M +R++VSW+ ++ G+                    + LD  T   V+ AC   
Sbjct: 344 QVVFDSMSKRNAVSWTSLLTGYGMHG--------------AALVLDGITFLVVLYACSHS 389

Query: 170 ---DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM---PTRD 223
              DR   +  R+  D V+  G  ++ + C A  D++ +   + +A +L + M   PT  
Sbjct: 390 GMVDRGIDLFYRMSKDFVVDPG--VEHYACMA--DLFGRAGRLCEATRLINDMSMEPTP- 444

Query: 224 LVTWTVMIGA 233
            V W  ++ A
Sbjct: 445 -VVWIALLSA 453


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/611 (36%), Positives = 325/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +  +R   Q+HAQ++      +  VA+ L+ +YA      +A  +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGV 327

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           FN + +R++V+W+V++ GF +   F    E F +     M LD + L  +I  C  R D+
Sbjct: 328 FNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDL 387

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-------------------------- 208
            +GR +H + LKSG      V  +L+ MYAKC                            
Sbjct: 388 CLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAH 447

Query: 209 -----IDDARQLFDQMPTRDLVTWTVMIG------------------------------- 232
                I  AR+ FD M T++++TW  M+G                               
Sbjct: 448 SQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTY 507

Query: 233 -----------ANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                      ANK              +LD  +  AVI MY+KCG I  AR++FD +  
Sbjct: 508 VTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNV 567

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+++SW+AMI  Y  HG GK+A+++F  +L     P+ I++V++L  CSH+GLV+EG   
Sbjct: 568 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSY 627

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  M     + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+IH 
Sbjct: 628 FDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHG 687

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK + E    + G Y+L++ +YA+AG+  D A+IR LM  + +KK PG++W+
Sbjct: 688 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWM 747

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNL 506
           EV NK+H F   D +HPQ   I + L  L EK+   GY+       E+H           
Sbjct: 748 EVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDSPRSEIH----------- 796

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFGL++ P    I IMKNLR+CGDCH+ IK +S++T R  ++RDA RFHHF
Sbjct: 797 --HSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHF 854

Query: 567 EGGACSCRDYW 577
            GG+CSC DYW
Sbjct: 855 NGGSCSCGDYW 865



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 181/429 (42%), Gaps = 91/429 (21%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y     +  A  LF+ M ERD VSW++MV   S+        +   +    G++
Sbjct: 208 NSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V+++   ID +V +ALV++YAKC    +A+ +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGV 327

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL-----------DV 240
           F+ +  R+ V WTV+I                          ++F L           D+
Sbjct: 328 FNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDL 387

Query: 241 ILG-------------------TAVIDMYAKC---------------------------- 253
            LG                    ++I MYAKC                            
Sbjct: 388 CLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAH 447

Query: 254 ---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITF 309
              G+I  ARE FD M  KNVI+W+AM+ AY  HG  +  L ++ +MLS + V P+ +T+
Sbjct: 448 SQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTY 507

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           V+L   C+  G  + G ++         +  D      ++ +  + GR+ EA K+ + ++
Sbjct: 508 VTLFKGCADLGANKLGDQIIGRTV-KVGLILDTSVANAVITMYSKCGRILEARKVFDFLN 566

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER--QPQNPGHYVLLSNVYANAGRWQDV 427
           V KD   W A++     H     A      +L+R  +P    +  +LS   +++G  Q+ 
Sbjct: 567 V-KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGC-SHSGLVQEG 624

Query: 428 AKIRDLMTR 436
               D+M R
Sbjct: 625 KSYFDMMKR 633



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 138/296 (46%), Gaps = 23/296 (7%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I  N +L  Y     L+DA  LF  M  RD  SW+ ++ G+ +   ++   E+F    
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 151 RCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           R G    +++T  + +++C    +  +   +  +V K G   D  V AALVDM+ +C  +
Sbjct: 130 RSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTV 189

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
           D A +LF ++    +     M+                  Y K   +D A E+FD M ++
Sbjct: 190 DLASRLFVRIKEPTIFCRNSMLVG----------------YVKTYGVDHALELFDSMPER 233

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +V+SW+ M++A    G+ ++ALD+   M S  V  +  T+ S L AC+    +  G +L 
Sbjct: 234 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLH 293

Query: 330 SSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           + +  +    P +  Y  + +V+L  + G   EA  +  S+  +++   W  L+  
Sbjct: 294 AQVIRNL---PCIDPYVASALVELYAKCGCFKEAKGVFNSLH-DRNNVAWTVLIAG 345


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/487 (42%), Positives = 288/487 (59%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++  N +++ YA++  +  A  +FNGM +RD+ SWS M+  ++K     +  E +RE  
Sbjct: 136 DMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMR 195

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              +  D  T+  V+ AC D   + +G  +H  V  +G++                    
Sbjct: 196 AACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE-------------------- 235

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                      LDV LGTA+IDMYAKCG I+++  +F  M  K+
Sbjct: 236 ---------------------------LDVKLGTALIDMYAKCGDIENSVRVFHSMPVKD 268

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V++WS+MI     HG G  AL LF  MLS  + PN +TF+ +L +C+H GLV +G + FS
Sbjct: 269 VLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFS 328

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM     V P V+HY CMVDLLGR+G ++EA +LI  M  E D  +W ALLGACRI+KNV
Sbjct: 329 SMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNV 388

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           ++AE A   L    P   GHYVLLSN+YA A  W+ VA++R  + R R+++IPG + IE 
Sbjct: 389 EVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEW 448

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +N IH+F  GD +HP+S+EIY+ML  + ++L  AGY P T   L D+DE+ K   L  HS
Sbjct: 449 QNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHS 508

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+AFGL+ TP G+ +RI KNLR C DCHS IK ++ +  R +I+RD NRFHHF  G 
Sbjct: 509 EKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGR 568

Query: 571 CSCRDYW 577
           CSC+DYW
Sbjct: 569 CSCKDYW 575



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 90/204 (44%), Gaps = 25/204 (12%)

Query: 48  MGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYAL 104
           + PDC           +S L +C ++  +    +VH  + + G   ++ +   L+ +YA 
Sbjct: 199 VNPDCTT--------MVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAK 250

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
              + ++  +F+ M  +D ++WS M+ G +      +    F   +  G+Q +  T   V
Sbjct: 251 CGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGV 310

Query: 165 IRACRDRKDIVMGR-------LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
           + +C     +  G+       ++H +  K    +  + C  +VD+  +   I++A+QL  
Sbjct: 311 LISCTHLGLVSDGKKYFSSMSVVHGVTPK----VQHYGC--MVDLLGRSGHIEEAKQLIR 364

Query: 218 QMPTR-DLVTWTVMIGANKFLLDV 240
            MP   D V W  ++GA +   +V
Sbjct: 365 DMPFEPDAVIWRALLGACRIYKNV 388


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/469 (44%), Positives = 296/469 (63%), Gaps = 35/469 (7%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L +A  +F+ M +R+ V+W+ M+ G      +    + +    R G +L++  L  +++ 
Sbjct: 134 LIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYE---RKGFELEALALFSLMQ- 189

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
               ++ V       I + S       VC +L  +       D  RQ+  Q+        
Sbjct: 190 ----REGVRPSFPSVISVLS-------VCGSLASL-------DHGRQVHSQLVR------ 225

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                 ++F +D+ + + +I MY KCG + +A+ +FDR   K+++ W+++IA Y  HG G
Sbjct: 226 ------SQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFG 279

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           +KAL++F  M SS + P+ ITF+ +L ACS+TG V+EGL +F SM   + V P  +HY C
Sbjct: 280 EKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYAC 339

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVDLLGRAG+L+EA+ LIE+M VE D  +WGALLGACR HKN+DLAE+AAK LL+ +P N
Sbjct: 340 MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNN 399

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST-HPQ 466
            G Y+LLSN+Y++  RW+DV ++R  M  + L+K PG +WIEV+ K+H FS G ST HP+
Sbjct: 400 AGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPE 459

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
            E I + L  L   L  AGY PD +F +HDVDEE KV +L  HSEKLA+A+GL+  PEG 
Sbjct: 460 HEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGM 519

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
            IR+MKNLRVCGD HS IK ++ +T R II+RD NRFHHF+ G CSC D
Sbjct: 520 PIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 104/225 (46%), Gaps = 38/225 (16%)

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
           Y + K   +AR+LFD+MP  + ++W  ++                  Y + G I  AR++
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSG----------------YVQNGMISEARKV 47

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD+M ++NV+SW+AMI  Y   G  ++A  LF  M    V    +++  +L      G V
Sbjct: 48  FDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV----VSWTVMLGGLIEDGRV 103

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM------------SV 370
           +E  +LF     D     DV   T M+D L   GRL EA ++ + M            S 
Sbjct: 104 DEARQLF-----DMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG 158

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           EKD+G W  ++      K  +L  +A  SL++R+   P    ++S
Sbjct: 159 EKDDGTWSTMIKIYE-RKGFELEALALFSLMQREGVRPSFPSVIS 202



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 137/315 (43%), Gaps = 71/315 (22%)

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           Y  +K   +A  LF+ M E +++SW+ +V G+                ++ GM       
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGY----------------VQNGM------- 40

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
                       I   R + D + +  +        A++  Y +  +I++A  LF +MP 
Sbjct: 41  ------------ISEARKVFDKMPERNV----VSWTAMIRGYVQEGLIEEAELLFWRMPE 84

Query: 222 RDLVTWTVMIG----------ANKF-----LLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
           R++V+WTVM+G          A +      + DV+  T +ID     G +  AREIFD M
Sbjct: 85  RNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEM 144

Query: 267 RQKNVISWSAMIAA-------------YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
            Q+NV++W++MI+              Y   G   +AL LF +M    V P+  + +S+L
Sbjct: 145 PQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVL 204

Query: 314 YACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
             C     ++ G ++ S +    F +  D+   + ++ +  + G L  A ++ +  S  K
Sbjct: 205 SVCGSLASLDHGRQVHSQLVRSQFDI--DIYVSSVLITMYIKCGDLVTAKRVFDRFS-SK 261

Query: 373 DEGLWGALLGACRIH 387
           D  +W +++     H
Sbjct: 262 DIVMWNSIIAGYAQH 276



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 9/184 (4%)

Query: 58  VDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           V P F   IS L  C ++  +   RQVH+Q+V      ++ V++ L+ +Y     L  A 
Sbjct: 193 VRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAK 252

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+    +D V W+ ++ G+++        E F +     +  D  T   V+ AC    
Sbjct: 253 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTG 312

Query: 173 DIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTV 229
            +  G  I +  +KS   +D      A +VD+  +   +++A  L + MP   D + W  
Sbjct: 313 KVKEGLEIFE-SMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGA 371

Query: 230 MIGA 233
           ++GA
Sbjct: 372 LLGA 375


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/556 (37%), Positives = 314/556 (56%), Gaps = 54/556 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           ++++H      G  +N +VAN  +  Y    AL  +  +F+ M  +   SW+ ++ G+++
Sbjct: 326 LKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQ 385

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            +D     + + +    G+  D +T+  ++ AC   K +  G  IH   L++GL +D F+
Sbjct: 386 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFI 445

Query: 196 CAALVDMYAKCK-------------------------------VIDDARQLFDQMPTRDL 224
             +L+ +Y  C                                + D+A  LF QM +  +
Sbjct: 446 GISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGI 505

Query: 225 VTWTVMI----GANKFLL-------------------DVILGTAVIDMYAKCGSIDSARE 261
             + + I    GA   L                    D+ + +++IDMYAK G I  ++ 
Sbjct: 506 QPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQR 565

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           IFDR+R+K+V SW+ +IA YG HG+GK+AL+LF  ML   + P+  TF  +L ACSH GL
Sbjct: 566 IFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGL 625

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           VE+GL  F+ M +   + P ++HYTC+VD+LGRAGR+D+AL+LIE M  + D  +W +LL
Sbjct: 626 VEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLL 685

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            +CRIH N+ L E  A  LLE +P+ P +YVL+SN++A +G+W DV ++R  M    L+K
Sbjct: 686 SSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQK 745

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G +WIEV  K+H F +GD   P+ EE+      L  K+   GY PDT   LHD++EE 
Sbjct: 746 DAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEED 805

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K+G L  HSEKLAI+FGL+ T +G  +R+ KNLR+CGDCH+  K +S +  R I+VRD  
Sbjct: 806 KIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNK 865

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 866 RFHHFRDGICSCGDYW 881



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 167/381 (43%), Gaps = 76/381 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVAN-KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R++H  + A     N  V N +++ +Y++  + +D+  +F+ ++ ++   W+ +V  +++
Sbjct: 18  RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 77

Query: 136 VADFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              F +    F E I     + D++TLP VI+AC    D+ +G++IH +  K  L  D F
Sbjct: 78  NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 137

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT---------------------VMIGA 233
           V  AL+ MY KC ++++A ++F+ MP R+LV+W                      +++G 
Sbjct: 138 VGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGE 197

Query: 234 NKFLLDV-----------------------------------ILGTAVIDMYAKCGSIDS 258
             F+ DV                                   ++  ++IDMY+KC  +  
Sbjct: 198 ESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSE 257

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVLPNRITFVSLLYAC 316
           A+ +FD+  +KN++SW++MI  Y       +   L   M +  +++  +  T +++L  C
Sbjct: 258 AQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317

Query: 317 SHTGLVEEGLRLFSSMW------DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
                ++    L    W      ++      +  YT       R G L  + ++ + M  
Sbjct: 318 LERSELQSLKELHGYSWRHGLQSNELVANAFIAAYT-------RCGALCSSERVFDLMDT 370

Query: 371 EKDEGLWGALLGACRIHKNVD 391
            K    W ALL  C   +N D
Sbjct: 371 -KTVSSWNALL--CGYAQNSD 388



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 109/233 (46%), Gaps = 53/233 (22%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++AC  RKDI +GR +H++V  S                                    
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSAS------------------------------------ 27

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                      +F  D +L T +I MY+ CGS   +R +FD++R+KN+  W+A+++AY  
Sbjct: 28  ----------TQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 77

Query: 284 HGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGL-RLFSSMWDDFAVRPD 341
           +   + A+ +F  ++S +   P+  T   ++ AC+  GL++ GL ++   M     +  D
Sbjct: 78  NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSD 135

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           V     ++ + G+ G ++EA+K+ E M  E++   W +++  C   +N  L E
Sbjct: 136 VFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSII--CGFSENGFLQE 185


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/576 (37%), Positives = 313/576 (54%), Gaps = 89/576 (15%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N  +   L+  Y  +  LT A  + + M E+  ++W+ M+ G+     F +    FR+  
Sbjct: 222 NEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMR 281

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ----FVCAALVDMYAKC 206
             G+Q+D  T   VI AC D    ++G+ +H  +LK+ L+ D+     V   L+ +Y K 
Sbjct: 282 LLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKY 341

Query: 207 KVIDDARQLF-------------------------------DQMPTRDLVTWTVMIGA-- 233
             +D AR++F                                QMP ++L+TWTVMI    
Sbjct: 342 GKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLA 401

Query: 234 ------------NKFLLD----------------------------------------VI 241
                       N+  LD                                        + 
Sbjct: 402 QNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLS 461

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +G A+I MYA+CG +++AR +F  M   + +SW++MIAA G HG G KA++L+  ML   
Sbjct: 462 VGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEG 521

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +LP+R TF+++L ACSH GLVEEG R F+SM +++ + P   HY  M+DL  RAG+  +A
Sbjct: 522 ILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDA 581

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             +I+SM  E    +W ALL  CR H N+DL   AA+ L +  PQ+ G YVLLSN+YA+ 
Sbjct: 582 KNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASL 641

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GRW DVA+ R LM  R +KK P  +W EVENK+H F V D+ HP+   IY  L  L+ ++
Sbjct: 642 GRWNDVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEM 701

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GYIPDT + LHD++ E K   L +HSEKLA+AFGL+  P+G  +R+ KNLR+CGDCH
Sbjct: 702 KKIGYIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCH 761

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + IK +S +  R I+VRD  RFHHF+ G CSCR+YW
Sbjct: 762 NAIKFMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 44/335 (13%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFN--GMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           ++I    L+  Y+    L  A  +FN   +  RD+V ++ M+ G+S + D  +  E FR 
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 149 FIRCGMQLDSYTLPFVIRACR----DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
                 Q D +T   V+ A      D +    G++ H  V+K G++I   V  AL+ +Y 
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQC--GQM-HGTVVKFGIEIFPAVLNALLSVYV 194

Query: 205 KCK---------VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           KC          ++  AR+LFD+MP R+   WT +I                  Y + G 
Sbjct: 195 KCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITG----------------YVRNGD 238

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +  AREI D M ++  I+W+AMI+ Y +HG  + AL LF  M    V  +  T+ S++ A
Sbjct: 239 LTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISA 298

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           C+  G    G ++ + +  +  + PD    +     ++ L  + G++D A K+   M V 
Sbjct: 299 CADGGFFLLGKQVHAYILKN-ELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPV- 356

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           KD   W  LL     + N    E  AKS   + P+
Sbjct: 357 KDIITWNTLLSG---YVNAGRME-EAKSFFAQMPE 387



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 40/249 (16%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
           + R +H  V+ SG  +   +   L+D+Y K      AR+LFD++P  D++  T +I A  
Sbjct: 31  LARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITA-- 88

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDR--MRQKNVISWSAMIAAYGYHGQGKKALDL 293
                         Y+  G++  AREIF+   +  ++ + ++AMI  Y +   G  A++L
Sbjct: 89  --------------YSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIEL 134

Query: 294 FPMMLSSRVLPNRITFVSLLYACS------------HTGLVEEGLRLFSSMWDDFAVRPD 341
           F  M  +   P+  TF S+L A +            H  +V+ G+ +F ++ +       
Sbjct: 135 FRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALL---S 191

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSL 400
           V        L+  +  +  A KL + M  +++E +W  L+ G  R   N DL    A+ +
Sbjct: 192 VYVKCASSPLVSSSSLMASARKLFDEMP-KRNEFIWTTLITGYVR---NGDLT--GAREI 245

Query: 401 LERQPQNPG 409
           L+   + PG
Sbjct: 246 LDTMTEQPG 254


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/519 (40%), Positives = 299/519 (57%), Gaps = 56/519 (10%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  M E+D VSW+ ++ G ++   +       RE     ++ DS+TL  V+    +  D
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-KVIDDAR------------------- 213
           I  G+ IH   ++ GLD D +V ++L+DMYAKC +V D  R                   
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 214 ----QLFDQ-----------------------MPTRDLVTWTVMIGA--------NKFLL 238
                LFD+                       MP    +T T+ +G         N F  
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT-TLHLGKQLHGYITRNGFDE 373

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           ++ + ++++DMYAKCG+I +A++IFDRMR ++++SW+AMI     HGQ   A++LF  M 
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQME 433

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           +  + PN + F+++L ACSH GLV+E  + F+SM  DF + P V+HY  + DLLGRAGRL
Sbjct: 434 TEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRL 493

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA   I  M +     +W  LL ACR+H N+D+AE  A  +LE  P N G Y+LL+N+Y
Sbjct: 494 EEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNNTGAYILLANIY 553

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           + A RW++ AK R  M R  ++K P  +WIEV+NK++ F  GD +HP  E+I   +  L 
Sbjct: 554 SAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLV 613

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E +E  GY+PDT+   HDV+EE K   + SHSE+LAI FG+I TP G  IR+ KNLRVC 
Sbjct: 614 ELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCT 673

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+  K +S I  R I+VRD +RFHHF+ G CSC DYW
Sbjct: 674 DCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 151/331 (45%), Gaps = 32/331 (9%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           K  + + LS ++  Q +Q+HAQ++     +   ++  L  IY+    L D+  LFN +  
Sbjct: 10  KALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLS-IYSHINLLHDSLRLFNTIHF 68

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
             +++W  ++  ++          +F   +  G+  D    P V+++C    D+ +G  +
Sbjct: 69  PPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESL 128

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDD-------ARQLFDQMPTRDLVTWTVMIGA 233
           H  +++ GLD D +   AL++MY+K + +++       A ++FD+M  R     TV + +
Sbjct: 129 HGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS 188

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                                  DS R+IF+ M +K+++SW+ +IA    +G  ++ L +
Sbjct: 189 E----------------------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
              M  + + P+  T  S+L   +    +  G  +         +  D+   + ++D+  
Sbjct: 227 IREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ-GLDADIYVASSLIDMYA 285

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           +  R+ ++ ++  ++  E+D   W +++  C
Sbjct: 286 KCTRVADSCRVF-TLLTERDGISWNSIIAGC 315


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/559 (36%), Positives = 315/559 (56%), Gaps = 54/559 (9%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           + Q +  HAQI+  G  T+L+ +N L+ +Y+   ++  A  +F+ M  R  VSW+ M+G 
Sbjct: 80  LLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGS 139

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            ++  +     +   +  R G     +T+  V+ AC  +  +   +L+H   +K+ +D++
Sbjct: 140 LTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLN 199

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------- 233
            FV  AL+D+YAKC ++ DA  +F+ MP R +VTW+ M                      
Sbjct: 200 VFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWE 259

Query: 234 -----NKFLL------------------------------DVILGTAVIDMYAKCGSIDS 258
                ++FL+                              ++ + +++IDMYAKCG I+ 
Sbjct: 260 TGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEE 319

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           + ++F  + ++NV+ W+AMI+    H +  + + LF  M    + PN +TFVS+L AC H
Sbjct: 320 SYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGH 379

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLV +G + F  M  +  + P+V HY+CMVD L RAG++ EA  LI  +       +WG
Sbjct: 380 MGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWG 439

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           +LL +CR H N++LAE+AAK L + +P N G+Y+LLSN+YA  G+W +VAK+R L+    
Sbjct: 440 SLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESD 499

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           +KK  G +WIE+++K+H F VG+  HP+  EIY  L  + ++L+  GY  +T  +LH V 
Sbjct: 500 VKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVG 559

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           E +K   L  HSEKLA   GL+  P    IRIMKNLR+CGDCHSF+K  S    R +IVR
Sbjct: 560 ESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVR 619

Query: 559 DANRFHHFEGGACSCRDYW 577
           D NRFHHF+ G CSC D+W
Sbjct: 620 DTNRFHHFKNGCCSCGDFW 638



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 149/330 (45%), Gaps = 59/330 (17%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C  RK ++ G+  H  +L  GL  D      L++MY+KC  +D ARQ+FD+MP+R 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
           LV+W  MIG+                        ++F +  +L                 
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                         TA++D+YAKCG +  A  +F+ M  ++V++WS+M A Y  +   ++
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL LF     + +  ++    S++ AC+    + EG ++ +++        ++   + ++
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQM-NALLSKSGFCSNIFVASSLI 308

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           D+  + G ++E+ K+   +  +++  LW A++     H    L  M     +++   +P 
Sbjct: 309 DMYAKCGGIEESYKVFRDVE-KRNVVLWNAMISGLSRHAR-SLEVMILFEKMQQMGLSPN 366

Query: 410 HYVLLSNVYA--NAGRWQDVAKIRDLMTRR 437
               +S + A  + G  +   K  DLMT+ 
Sbjct: 367 DVTFVSVLSACGHMGLVRKGQKYFDLMTKE 396


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 340/607 (56%), Gaps = 66/607 (10%)

Query: 25  TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIV 84
           + + A++P    QNP+N     Q   +  + +  +    + S    R++ Q  Q+HA I+
Sbjct: 4   STSTAIKP---SQNPLN-----QNSFEQNYRQICN---LLLSFTRSRSLRQGLQLHAHIL 52

Query: 85  AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFE 144
             G  T  +V++ L+ +Y+  +    +  +F+   ++ S +WS ++  F++    +   +
Sbjct: 53  KFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQ 112

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
            FR  +  G++ D +  P   +AC   +   +G+ +H + +K+G   D FV ++LVDMYA
Sbjct: 113 FFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYA 172

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMI------------------------GANKFLLDV 240
           KC  I DAR LFD+MP R++V+W+ MI                          N F    
Sbjct: 173 KCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSS 232

Query: 241 IL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           ++                              G+A+I +Y+KCG I+ A ++FD +  +N
Sbjct: 233 VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRN 292

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           +  W++M+ A   H   ++   LF  M +  + PN I+F+S+LYACSH GLVE+G   FS
Sbjct: 293 LGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYFS 352

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M  D+ + P+ +HY  +VDLLGRAG+L EA+ +I+ M +   E +WGALL  CRIHK+ 
Sbjct: 353 LM-RDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDT 411

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           ++A   A  +LE    + G +VLLSN YA AGR+++ A++R ++  R +KK  G +W+E 
Sbjct: 412 EMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEE 471

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            NK+H F+ GD +H +  EIY  L  L E++E AGY+ DT+F L  VD E K   +  HS
Sbjct: 472 GNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHS 531

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LAIAFGLI  P G  IR+MKNLRVCGDCH+ IK +S    RV+IVRD NRFH FE G 
Sbjct: 532 ERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGK 591

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 592 CSCGDYW 598


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/554 (39%), Positives = 305/554 (55%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA+ +   + TN  V   LL +YA    L  A  +F+ M    +VSW+ ++  +    
Sbjct: 92  QLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAG 151

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D        R     GM+ DS+T   V+ AC    D+  G  +     + G+    FV  
Sbjct: 152 DLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVAT 211

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           A VD+Y KC  +  AR++FD+M  +D V W  M                           
Sbjct: 212 AAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRP 271

Query: 231 --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                         +GA             ++FL + +LGTA+IDMYAKCGS   A  +F
Sbjct: 272 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVF 331

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
            +MR+K++I W+AMI   G  G  K A  L   M  S V  N  TF+ LL +C+HTGL++
Sbjct: 332 QQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 391

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G R F +M   + + P ++HY C+VDLL RAG L EA +LI+ M +  +  + GALLG 
Sbjct: 392 DGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGG 451

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C+IH+N +LAE     L+  +P N G+YV+LSN+Y+N GRW+D AK+R  M  + ++K+P
Sbjct: 452 CKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVP 511

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
             +W+E E K+H+F VGD +HP S++IY+ L  L  +++  GY P T   + DV++E K 
Sbjct: 512 ACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKE 571

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLAIAF L+ T  G  IR+ KNLRVC DCH+ IK +S IT R IIVRD NRF
Sbjct: 572 HTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRF 631

Query: 564 HHFEGGACSCRDYW 577
           H F  G+CSC DYW
Sbjct: 632 HCFRDGSCSCNDYW 645



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 59/278 (21%)

Query: 160 TLPFVIR-ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           T P  ++ A R    +  G  +H   LK     +  V  +L+ +YA+C ++  A+++FD+
Sbjct: 72  TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131

Query: 219 MPTRDLVTWTVMIGA---------------NKF--------------------LLDVILG 243
           MP    V+WT +I A               N F                    + D+  G
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 191

Query: 244 -------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                              TA +D+Y KCG +  ARE+FD+MR K+ ++W AM+  Y  +
Sbjct: 192 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 251

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVK 343
           G  ++ALDLF  M +  V P+       L AC+  G ++ G +    + WD+F   P + 
Sbjct: 252 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             T ++D+  + G   EA  + + M  +KD  +W A++
Sbjct: 312 --TALIDMYAKCGSTAEAWVVFQQMR-KKDIIVWNAMI 346


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 332/584 (56%), Gaps = 57/584 (9%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P     R  D    I+  +  R + + RQVHA++V  G    L +A +L+ +YA   AL 
Sbjct: 28  PGAGAARFHDYDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALE 87

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           DAH + +GM ER+ VSW+ M+ G+S+       ++ F   +R G + + +TL  V+ +C 
Sbjct: 88  DAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCT 147

Query: 170 DRKDIVMGRL--IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
             + I   ++  +H   +K   ++  FV ++L+DMYA+ + I +AR++FD +P RD+V++
Sbjct: 148 GSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSY 207

Query: 228 TVMIGA------------------------NKFLLDVILG-------------------- 243
           T ++                          N+    V+L                     
Sbjct: 208 TTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILR 267

Query: 244 ----------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                      ++IDMY+KCG +  +R +FD M +++V+SW+AM+  YG HG   + + L
Sbjct: 268 RELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQL 327

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M   +V P+ +T +++L   SH GLV+EGL +F  +  + +   + +HY C++DLLG
Sbjct: 328 FRFM-CDKVKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLG 386

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           R+G+L++AL LI+ M  +    +WG+LLGACR+H NV + E  A+ L + +P+N G+YV+
Sbjct: 387 RSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVI 446

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           LSN+YA A  W+DV ++R LM ++ + K PG +W+ ++  IH F   +  HP+ E+I   
Sbjct: 447 LSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVK 506

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           +  +   ++ AG++PD +  LHDVD+E K   L  HSEKLAI FGL++TP    I++MKN
Sbjct: 507 INEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKN 566

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LR+C DCH+F K VS +  R I +RD NRFH    GAC+C DYW
Sbjct: 567 LRICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 317/561 (56%), Gaps = 57/561 (10%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           + Q + +HA  +      N+++   LL +YA    L  A  +FN + +++ V WS M+GG
Sbjct: 226 LHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGG 285

Query: 133 FSKVADFINCFETFREFIRC--GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           +  + D I+      + + C  G+     TL  ++RAC    D+  G+ +H  ++KSG+D
Sbjct: 286 YV-LHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMD 344

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------ANKFLL----- 238
           +D  V  +L+ MYAKC ++D+A    D+M  +D V+++ +I        A K LL     
Sbjct: 345 LDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQM 404

Query: 239 ------------------------------------------DVILGTAVIDMYAKCGSI 256
                                                     D  +  A+IDMY+KCG I
Sbjct: 405 QSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKI 464

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             +REIFDRM+ +++ISW+ MI  YG HG   +AL LF  + +  + P+ +T +++L AC
Sbjct: 465 TISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSAC 524

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH+GLV EG   FSSM  +F ++P + HY CMVDLL RAG LDEA   I+ M    +  +
Sbjct: 525 SHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRI 584

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL ACR HKN+++ E  +K +    P+  G++VL+SN+Y++ GRW D A IR +   
Sbjct: 585 WGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRH 644

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
              KK PG +W+E+   IH F  G  +HPQS  I + L  L  +++  GY  D++F LHD
Sbjct: 645 HGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHD 704

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+EE K   L  HSEK+AIAFG++ T   + I + KNLR+C DCHS IK ++ +T R I 
Sbjct: 705 VEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREIT 764

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA+RFHHF+ G C+C+D+W
Sbjct: 765 VRDASRFHHFKDGICNCQDFW 785



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 137/334 (41%), Gaps = 57/334 (17%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM--KERDSVSWSVMVGGFSK 135
             HA I+  G   +L V+  LL++YA    L  A  LFN +  ++RD V+W+ M+  FS 
Sbjct: 130 HTHAHIL--GLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSF 187

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            A       +  +  + G+  +S TL  ++        +  G+ IH   +++    +  +
Sbjct: 188 HALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVL 247

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
             AL+DMYAKC ++  AR++F+ +  ++ V W+ MIG                 Y    S
Sbjct: 248 QTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGG----------------YVLHDS 291

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I  A  ++D            M+  YG +                   P   T  ++L A
Sbjct: 292 ISDALALYDD-----------MLCIYGLN-------------------PTPATLATMLRA 321

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+    ++ G +L   M     +  D      ++ +  + G +D A+  ++ M + KD  
Sbjct: 322 CAQLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTV 379

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
            + A++  C     V         L+ RQ Q+ G
Sbjct: 380 SYSAIISGC-----VQNGYAEKALLIFRQMQSSG 408



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 117/283 (41%), Gaps = 51/283 (18%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+ + +   V W++M+  ++    F      +   ++ G+   ++T PF+++AC  
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP--TRDLVTWT 228
            + + +GRLIH      GL +D +V  AL+ MYAKC  +  A+ LF+ +    RD+V W 
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
            MI A                                               + +H    
Sbjct: 180 AMIAA-----------------------------------------------FSFHALHA 192

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           + +     M  + V PN  T VS+L        + +G  + +    +F    +V   T +
Sbjct: 193 QTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFF-DNVVLQTAL 251

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           +D+  +   L  A K+  +++ +K++  W A++G   +H ++ 
Sbjct: 252 LDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIGGYVLHDSIS 293



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 2/133 (1%)

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I  AR +FD++ + +V+ W+ MI  Y + G  ++++ L+  ML   V P   TF  LL A
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEKDE 374
           CS    ++ G RL  +      +  D+   T ++ +  + G L +A  L  S+S  ++D 
Sbjct: 117 CSSLQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 375 GLWGALLGACRIH 387
             W A++ A   H
Sbjct: 176 VAWNAMIAAFSFH 188



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/191 (20%), Positives = 86/191 (45%), Gaps = 11/191 (5%)

Query: 64  ISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           I+ L +C ++  ++     H   V  G   +  + N ++ +Y+    +T +  +F+ M+ 
Sbjct: 417 IALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQN 476

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           RD +SW+ M+ G+      +     F+E    G++ D  TL  V+ AC     +  G+  
Sbjct: 477 RDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYW 536

Query: 181 HDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANK 235
               +    +I      ++C  +VD+ A+   +D+A     +MP   ++  W  ++ A +
Sbjct: 537 FS-SMSQNFNIKPRMAHYIC--MVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACR 593

Query: 236 FLLDVILGTAV 246
              ++ +G  V
Sbjct: 594 THKNIEMGEQV 604


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 307/565 (54%), Gaps = 89/565 (15%)

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           Y  +  L  A    NG  ++  V+W+ M+ G++    ++  FE FR+ I   +QLD +T 
Sbjct: 233 YVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTF 292

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKS----GLDIDQFVCAALVDMYAKC----------- 206
             VI  C +     +G+ +H   LK+      D+   V  AL+  Y KC           
Sbjct: 293 TSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFN 352

Query: 207 --------------------KVIDDARQLFDQMPTRD------LVTWTVMIG----ANKF 236
                               + +D+A+  F++MP ++      +++    IG    A KF
Sbjct: 353 KMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKF 412

Query: 237 LLDVIL--------------------------------------------GTAVIDMYAK 252
              + L                                            G A+I MYA+
Sbjct: 413 FNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYAR 472

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG +D+A  +F  M   + ISW+AMIAA G HGQG +A++LF  ML   +LP+RI+F+++
Sbjct: 473 CGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTV 532

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           + ACSH GLV+EG + F SM + + V PD +HY  ++DLL RAG+  EA +++ESM  E 
Sbjct: 533 ISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEP 592

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
              +W ALL  CRIH N+DL   AA+ L E +PQ+ G YVLLSN+YA AG+W D+AK+R 
Sbjct: 593 GAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRK 652

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
           LM  R +KK PG +WIEVENK+H F VGD+ HP+  +IY  L  L  ++   GY+PDT  
Sbjct: 653 LMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKC 712

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            LHDV+ ++K   L +HSEKLA+A+G +  P G  +R+ KNLR+CGDCH+  K +S +  
Sbjct: 713 VLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVG 772

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I+VRD  RFHHF  G CSC DYW
Sbjct: 773 REIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 168/407 (41%), Gaps = 72/407 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---------------- 120
           R VHA ++A G      + N+L+ IY+    L  A  LF+ + +                
Sbjct: 33  RPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAA 92

Query: 121 -----------------RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
                            RDSV ++ M+  +S   D     E F +  R   + D+YT   
Sbjct: 93  GDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTS 152

Query: 164 VIRA----CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK---------VID 210
           V+ A        K     + +H  V+KSG      V  AL+  Y KC          ++ 
Sbjct: 153 VLGALALVAEKEKHC---QQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMA 209

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +AR+LFD+MP RD ++WT +I                  Y K   +D+A+E  +   +K 
Sbjct: 210 EARKLFDEMPNRDELSWTTIITG----------------YVKNNDLDAAKEFLNGTSKKL 253

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
            ++W+AMI+ Y + G   +A ++F  M+ S++  +  TF S++  C++ G    G  + +
Sbjct: 254 GVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHA 313

Query: 331 SMWDDFA-VRPDVKH--YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
                 A   PDV       ++    + G++D A ++   M  E+D   W  +L     +
Sbjct: 314 YFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP-ERDLVSWNIILSG---Y 369

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            NV   + A     E   +N   ++++ +  A  G  ++  K  + M
Sbjct: 370 VNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRM 416



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 5/186 (2%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  +++SC  +  +   RQ+HAQ+V  G  ++L   N L+ +YA    +  AH LF  M 
Sbjct: 428 FAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMP 487

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             D++SW+ M+    +        E F E ++ G+  D  +   VI AC     +  GR 
Sbjct: 488 CVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRK 547

Query: 180 IHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFL 237
             D +    G++ D+   A ++D+  +     +A+++ + MP       W  ++   +  
Sbjct: 548 YFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIH 607

Query: 238 LDVILG 243
            ++ LG
Sbjct: 608 GNIDLG 613



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 133/307 (43%), Gaps = 43/307 (14%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
           + R +H  ++ SG      +   L+D+Y+K   ++ AR LFD++P  D+V  T +I A  
Sbjct: 31  LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAA-- 88

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFD--RMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                         Y+  G +  +R+IF    +  ++ + ++AMI AY ++  G  A++L
Sbjct: 89  --------------YSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIEL 134

Query: 294 FPMMLSSRVLPNRITFVSLLYACS------------HTGLVEEGLRLFSSMWDDFAVRPD 341
           F  M      P+  TF S+L A +            H  +V+ G    +S+ +       
Sbjct: 135 FCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALI---- 190

Query: 342 VKHYTCMVDLLGRAGRL-DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
             +  C      ++  L  EA KL + M   +DE  W  ++     + ++D    AAK  
Sbjct: 191 SSYVKCAASPSAQSSSLMAEARKLFDEMP-NRDELSWTTIITGYVKNNDLD----AAKEF 245

Query: 401 LERQPQNPG-HYVLLSNVYANAGRWQDVAKI--RDLMTRRRLKKIPGWTWIEVENKIHQF 457
           L    +  G  +  + + YA+ G + +  ++  + +M++ +L +    + I V      F
Sbjct: 246 LNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCF 305

Query: 458 SVGDSTH 464
            +G   H
Sbjct: 306 RLGKEMH 312


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/553 (40%), Positives = 312/553 (56%), Gaps = 55/553 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VH  I + G      + N L+ +Y     L +A  LF+ M ER+ VSW+ M+  +S  
Sbjct: 305 KRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNA 364

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                         R G+  + +T   V+RAC    D+   + +H  ++K GL+ D FV 
Sbjct: 365 QLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVR 421

Query: 197 AALVDMYAK-------CKVI------------------------DDARQLFDQMP----T 221
           +AL+D+Y+K        KV                         D+A  L+  M      
Sbjct: 422 SALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP 481

Query: 222 RDLVTWTVMIGAN-----------------KFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
            D  T T ++ A                  KF  D+IL  A++DMY KCGS++ A+ IF+
Sbjct: 482 ADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFN 541

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           RM +K+VISWS MIA    +G   +AL+LF  M      PN IT + +L+ACSH GLV E
Sbjct: 542 RMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNE 601

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G   F SM + + + P  +HY CM+DLLGRA +LD+ +KLI  M+ E D   W  LL AC
Sbjct: 602 GWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDAC 661

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           R  +NVDLA  AAK +L+  PQ+ G YVLLSN+YA + RW DVA++R  M +R ++K PG
Sbjct: 662 RARQNVDLATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPG 721

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            +WIEV  +IH F +GD +HPQ +EI R L     +L  AGY+PDTNF L D++ E +  
Sbjct: 722 CSWIEVNKQIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQRED 781

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
           +L  HSEKLAI FG+++ P+   IRI KNL++CGDCH F K ++ + +R I++RD  R+H
Sbjct: 782 SLRYHSEKLAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYH 841

Query: 565 HFEGGACSCRDYW 577
           HF+ G CSC DYW
Sbjct: 842 HFQDGVCSCGDYW 854



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 151/364 (41%), Gaps = 84/364 (23%)

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G+  DS T   +I+ C     +  G+ +H  +  +G     F+   L++MY K  +++
Sbjct: 278 RRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLE 337

Query: 211 DARQLFDQMPTRDLVTWTVMIGA------------------------NKFLL-------- 238
           +A+ LFD+MP R++V+WT MI A                        N F          
Sbjct: 338 EAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACE 397

Query: 239 -------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                              DV + +A+ID+Y+K G +  A ++F  M   + + W+++IA
Sbjct: 398 RLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIA 457

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-------------L 326
           A+  H  G +AL L+  M       ++ T  S+L AC+   L+E G             L
Sbjct: 458 AFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDL 517

Query: 327 RLFSSMWDDFA---------------VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
            L +++ D +                 + DV  ++ M+  L + G   EAL L ESM V+
Sbjct: 518 ILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQ 577

Query: 372 KDEGLWGALLG---ACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQD 426
             +     +LG   AC     V+      +S+      +PG  HY  + ++   A +  D
Sbjct: 578 GPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDD 637

Query: 427 VAKI 430
           + K+
Sbjct: 638 MVKL 641



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 13/194 (6%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D     S L +C ++  +   RQ H  ++      +LI+ N LL +Y    +L DA  +F
Sbjct: 483 DQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQ--DLILNNALLDMYCKCGSLEDAKFIF 540

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           N M ++D +SWS M+ G ++    +     F      G + +  T+  V+ AC     + 
Sbjct: 541 NRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVN 600

Query: 176 MG----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVM 230
            G    R ++++    G+D  +     ++D+  + + +DD  +L  +M    D+VTW  +
Sbjct: 601 EGWYYFRSMNNLY---GIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTL 657

Query: 231 IGANKFLLDVILGT 244
           + A +   +V L T
Sbjct: 658 LDACRARQNVDLAT 671


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/606 (36%), Positives = 326/606 (53%), Gaps = 88/606 (14%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA-- 113
           D   F S L SC  +  +R    VH  I+  G   +L   N L+ +Y+   +L + +   
Sbjct: 105 DHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYK 164

Query: 114 ---------------------------LFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
                                      +F  M +RD VSW+ ++ G ++     +     
Sbjct: 165 KVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMV 224

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           RE     ++ DS+TL  V+    +  +++ G+ IH   +++G D D F+ ++L+DMYAKC
Sbjct: 225 REMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKC 284

Query: 207 KVIDDA------------------------RQLFDQ-----------------------M 219
             +DD+                          +FD+                       M
Sbjct: 285 TRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIM 344

Query: 220 PTRDLVTWTVMIGA--------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           P    +T T+ +G         ++F  +V + +A++DMYAKCG+I +AR IFD+M   ++
Sbjct: 345 PACAHLT-TLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDM 403

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           +SW+AMI  Y  HG    A+ LF  M    V PN + F+++L ACSH GLV+E  + F+S
Sbjct: 404 VSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNS 463

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M  D+ + P ++HY  + DLLGR GRL+EA + I  M +E    +W  LL ACR+HKN++
Sbjct: 464 MTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIE 523

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE  +K L    PQN G YVLLSN+Y+ AGRW+D  K+R  M  + +KK P  +WIE++
Sbjct: 524 LAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIK 583

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           NK+H F  GD +HP  + I   L  L E++E  GY+ DT   LHDV+EE K   L SHSE
Sbjct: 584 NKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSE 643

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           +LAI FG+I+TP GT IR+ KNLRVC DCH+  K +S I  R I+VRD +RFHHF+ G C
Sbjct: 644 RLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKC 703

Query: 572 SCRDYW 577
           SC D+W
Sbjct: 704 SCGDFW 709



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 155/324 (47%), Gaps = 36/324 (11%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER-DSVSWS 127
           S ++  Q +Q+HAQI+   +L +  + + +L IY+    L D+  +FN +     +++W 
Sbjct: 17  SVKSKSQAKQLHAQILRT-SLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWK 75

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            ++  ++    F++    F + +  G   D    P V+++C   KD+  G  +H  +++ 
Sbjct: 76  SIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRL 135

Query: 188 GLDIDQFVCAALVDMYAK---CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
           G+  D + C AL++MY+K    + ++  +++FD+  T D+ +        K      LG 
Sbjct: 136 GMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYS-------KKEKESYYLG- 187

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
                        S R++F+ M +++++SW+ +I+    +G  + AL +   M ++ + P
Sbjct: 188 -------------SLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRP 234

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDE 360
           +  T  S+L   +    + +G  +       +A+R     DV   + ++D+  +  R+D+
Sbjct: 235 DSFTLSSVLPIFAEYVNLLKGKEIHG-----YAIRNGYDADVFIGSSLIDMYAKCTRVDD 289

Query: 361 ALKLIESMSVEKDEGLWGALLGAC 384
           + ++   M  + D   W +++  C
Sbjct: 290 SCRVF-YMLPQHDGISWNSIIAGC 312


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/590 (37%), Positives = 323/590 (54%), Gaps = 63/590 (10%)

Query: 46  MQMG---PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102
           M MG   P+     SV P F    L+        + VH   V GG   N+ V   L+ +Y
Sbjct: 113 MTMGNFKPNAVTISSVLPAFANLGLIRIA-----KSVHCFWVRGGFEGNVFVETALVDMY 167

Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
           +    +  A  LF  M ER+ VSW+ +V G+S         + F    R G+ +D YT+ 
Sbjct: 168 SKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIM 227

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            +I A      + +G  IH  ++++G + D+ +  AL+D+Y     +DDA ++F +M  +
Sbjct: 228 SLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVK 287

Query: 223 DLVTWTV--------------------MIGANKFLLD----------------------- 239
           D+  WT+                    M+G     LD                       
Sbjct: 288 DVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRV 347

Query: 240 ------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                       + +G+AVIDMYA CG+++ A+  F  M +K+V+ W+AMIA  G +G G
Sbjct: 348 HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYG 407

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
             A+DLF  M  S + P+  TFVS+LYACSH G+V EGL++F  M       P+++HY C
Sbjct: 408 TDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYAC 467

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           ++D+LGRAG+LD A   I +M  + D  ++  LLGACRIH N+ L    ++ + E +P +
Sbjct: 468 VIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPND 527

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            G+YVLLSN+YA AG W+ V   R  +  +RLKK PG++ IE+  +I+ F  G+  HPQ 
Sbjct: 528 AGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQY 587

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
            +I  +L  L  K++ AGY+P+TN  L DV +++K   LY HSEK+AIAFGL+ T  GT 
Sbjct: 588 FKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTI 647

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IRI KNLR C DCHS  K VS +  RV++++DANRFH F+ G CSCRDYW
Sbjct: 648 IRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 170/375 (45%), Gaps = 59/375 (15%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           S L   +++  ++Q+HAQI+  G   N  ++N L+  Y     L DA  +F+    ++ V
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVV 88

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           SW++++ G +K   F+   + FRE      + ++ T+  V+ A  +   I + + +H   
Sbjct: 89  SWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------- 231
           ++ G + + FV  ALVDMY+K   +  ARQLF+ M  R++V+W  ++             
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAI 208

Query: 232 -----------------------------------GANKFLL------DVILGTAVIDMY 250
                                              G + F++      D  + TA++D+Y
Sbjct: 209 DLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIY 268

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITF 309
                +D A  +F  M  K+V +W+ M+  +       +A+  F  ML  + L  + I  
Sbjct: 269 VSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVL 328

Query: 310 VSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           + +L +CSH+G +++G R+ + ++   FA    V   + ++D+    G L++A +    M
Sbjct: 329 MGILSSCSHSGALQQGRRVHALAIKTCFANNIFVG--SAVIDMYANCGNLEDAKRFFYGM 386

Query: 369 SVEKDEGLWGALLGA 383
             EKD   W A++  
Sbjct: 387 G-EKDVVCWNAMIAG 400


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 327/570 (57%), Gaps = 59/570 (10%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH----KALTDAHALFNGMKERD 122
           L  C NI + +QVHA+ +      +   +   +     H     ++  A ++F G+ +  
Sbjct: 38  LKRCNNIDEFKQVHARFIKLSLFCSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 97

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           +  +  M+ G+     F      + E +  G++ D++T P +++AC   K I  G+ IH 
Sbjct: 98  TFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQIHG 157

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
            V K GL+ D FV  +L++MY +C  ++ +  +F+++  +   +W+ M  A         
Sbjct: 158 HVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGMWSE 217

Query: 234 ----------------------------------------NKFLL------DVILGTAVI 247
                                                   + FLL      ++I+ T+++
Sbjct: 218 CLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKTSLV 277

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMY KCG ID+A  IF +M ++N +++SAMI+ +  HG+G+ AL +F  M+   + P+ +
Sbjct: 278 DMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHV 337

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            +VSLL ACSH+GLV+EG R+F  M  +  V P  +HY C+VDLLGRAG L+EAL+ I+S
Sbjct: 338 VYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 397

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           + +E+++ +W + L  CR+H+N++L ++AA+ LL+    NPG Y+L+SN+Y+ A  W DV
Sbjct: 398 IPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMWDDV 457

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           A+ R  +  + LK+ PG++ ++V+ K H+F   D +HPQ +EIY+ML  +  +L+  GY 
Sbjct: 458 ARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFEGYS 517

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PD    L +VDEE K   L  HS+K+AIAF L+ TP G+ I+I +NLR+C DCH++ K +
Sbjct: 518 PDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYTKKI 577

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S I  R I+VRD NRFH F+GG CSC+DYW
Sbjct: 578 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/611 (35%), Positives = 329/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +  +   +Q+HAQ++      +  VA+ ++ +YA      +A  +
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRV 351

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ +++R++VSW+V++GGF +   F    E F +     M +D + L  +I  C +R D+
Sbjct: 352 FSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDM 411

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
            + R +H + LKSG      +  +L+ MYAKC  + +A                      
Sbjct: 412 CLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAY 471

Query: 213 ---------RQLFDQMPTRDLVTWTVMIG------------------------------- 232
                    R+ FD M TR+++TW  M+G                               
Sbjct: 472 SQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTY 531

Query: 233 -----------ANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                      ANK              +LD  +  AVI MY+KCG I  AR+IFD + +
Sbjct: 532 VTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSR 591

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+++SW+AMI  Y  HG GK+A+++F  ML     P+ I++V++L +CSH+GLV+EG   
Sbjct: 592 KDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFY 651

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  +  D  V P ++H++CMVDLL RAG L EA  LI+ M ++    +WGALL AC+ H 
Sbjct: 652 FDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 711

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK L +    + G Y+LL+ +YA+AG+  D A++R LM  + +KK PG++W+
Sbjct: 712 NNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWM 771

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF--ELHDVDEEVKVGNL 506
           EV+NK+H F   D +HPQ   I   L  L EK+   GY+   +   E+H           
Sbjct: 772 EVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRTESLRSEIH----------- 820

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFG++  P    I IMKNLR+CGDCH+ IK +S +T R  ++RDA RFHHF
Sbjct: 821 --HSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHF 878

Query: 567 EGGACSCRDYW 577
           +GG+CSC DYW
Sbjct: 879 KGGSCSCGDYW 889



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 141/307 (45%), Gaps = 58/307 (18%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  YA    +  A  LF  M ERD VSW++MV   S+            +    G++
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V++S   ID +V +A+V++YAKC    +AR++
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRV 351

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLLDVI---------- 241
           F  +  R+ V+WTV+IG                         ++F L  I          
Sbjct: 352 FSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDM 411

Query: 242 --------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                               +  ++I MYAKCG++ +A  IF  M +++++SW+ M+ AY
Sbjct: 412 CLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAY 471

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G   KA + F  M S+R   N IT+ ++L A    G  E+GL+++S+M  +  V PD
Sbjct: 472 SQVGNIGKAREFFDGM-STR---NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPD 527

Query: 342 VKHYTCM 348
              Y  +
Sbjct: 528 WVTYVTL 534



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 142/301 (47%), Gaps = 27/301 (8%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           T  N+I  N ++  YA   +L+DA  LF  M  RD  SW+ ++ G+ +   F++  E+F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 148 EFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
              R G  L +++T    +++C       +   +  ++ K G   D  V   +VDM+ +C
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 207 KVIDDARQLFDQM--PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
             +D A + F Q+  PT                  V    +++  YAK   +D A E+F+
Sbjct: 211 GAVDFASKQFSQIERPT------------------VFCRNSMLAGYAKSYGVDHALELFE 252

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            M +++V+SW+ M++A    G+ ++AL +   M +  V  +  T+ S L AC+    +  
Sbjct: 253 SMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGW 312

Query: 325 GLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           G +L + +       P +  Y  + MV+L  + G   EA ++  S+  +++   W  L+G
Sbjct: 313 GKQLHAQVIRSL---PCIDPYVASAMVELYAKCGCFKEARRVFSSLR-DRNTVSWTVLIG 368

Query: 383 A 383
            
Sbjct: 369 G 369



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 19/205 (9%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF-DQM 219
           L   +R+C  R  +   R +H  ++  GL    F+   L+  Y  C  + DAR L    +
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
              +++T  +M+                  YAK GS+  A E+F RM +++V SW+ +++
Sbjct: 91  TEPNVITHNIMMNG----------------YAKLGSLSDAEELFGRMPRRDVTSWNTLMS 134

Query: 280 AYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
            Y   G+   A++ F  M  S   LPN  TF   + +C   G  E  L+L   +   F  
Sbjct: 135 GYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLL-GLLTKFGF 193

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALK 363
           + D    T +VD+  R G +D A K
Sbjct: 194 QGDPDVATGIVDMFVRCGAVDFASK 218


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/611 (36%), Positives = 324/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +  +R   Q+HAQ++      +  VA+ L+ +YA      +A  +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 327

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           FN + +R++V+W+V++ GF +   F    E F +     M LD + L  +I  C  R D+
Sbjct: 328 FNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDL 387

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
            +GR +H + LKSG      V  +L+ MYAKC  +  A                      
Sbjct: 388 CLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAY 447

Query: 213 ---------RQLFDQMPTRDLVTWTVMIG------------------------------- 232
                    R+ FD M  ++++TW  M+G                               
Sbjct: 448 SQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 507

Query: 233 -----------ANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                      ANK              ++D  +  AVI MY+KCG I  AR++FD +  
Sbjct: 508 VTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNV 567

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+++SW+AMI  Y  HG GK+A+++F  +L     P+ I++V++L  CSH+GLV+EG   
Sbjct: 568 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFY 627

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  M     + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+IH 
Sbjct: 628 FDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 687

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK + E    + G Y+L++ +YA+AG+  D A+IR LM  + +KK PG++W+
Sbjct: 688 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWM 747

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNL 506
           EV+NK+H F   D +HPQ   I + L  L EK+   GY+    T  E+H           
Sbjct: 748 EVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIH----------- 796

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFGL+  P    I IMKNLR+CGDCH+ IK +S +T R  ++RDA RFHHF
Sbjct: 797 --HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHF 854

Query: 567 EGGACSCRDYW 577
            GG+CSC DYW
Sbjct: 855 NGGSCSCGDYW 865



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 137/307 (44%), Gaps = 58/307 (18%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y     +  A  LF+ M ERD VSW++MV   S+        +   +    G++
Sbjct: 208 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V+++   ID +V +ALV++YAK     +A+ +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 327

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL-----------DV 240
           F+ +  R+ V WTV+I                          ++F L           D+
Sbjct: 328 FNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDL 387

Query: 241 ILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
            LG                    ++I MYAKC ++ SA  IF  M +K+++SW++MI AY
Sbjct: 388 CLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAY 447

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G   KA + F  M       N IT+ ++L A    G  E+GLR++  M  +  VRPD
Sbjct: 448 SQVGNVAKAREFFDGMSE----KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 503

Query: 342 VKHYTCM 348
              Y  +
Sbjct: 504 WVTYVTL 510



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 149/322 (46%), Gaps = 26/322 (8%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + LSC  +   R++    +A     N+I  N +L  YA    L+DA  LF  M  RD
Sbjct: 45  LLHAYLSCGALSDARRLLLMDIAH---PNVITHNVMLNGYAKLGRLSDAVELFGRMPARD 101

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIH 181
             SW+ ++ G+ +   ++   ETF    R G    +++TL   +++C       +   + 
Sbjct: 102 VASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL 161

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
            +V K     D  V AALVDM+ +C  +D A +LF ++    +     M+          
Sbjct: 162 AMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG-------- 213

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                   Y K   +D A E+FD M +++V+SW+ M++A    G+ ++ALD+   M S  
Sbjct: 214 --------YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 265

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLD 359
           V  +  T+ S L AC+    +  G +L + +  +    P +  Y  + +V+L  ++G   
Sbjct: 266 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFK 322

Query: 360 EALKLIESMSVEKDEGLWGALL 381
           EA  +  S+  +++   W  L+
Sbjct: 323 EAKGVFNSLH-DRNNVAWTVLI 343


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 311/556 (55%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH  +V    + N+ VAN LL  Y+ H  + +A  LF  M E D +S++V+V  ++  
Sbjct: 319 QQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWN 378

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E F+E    G    ++    ++       ++ +GR IH   + +    +  V 
Sbjct: 379 GRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVG 438

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IG 232
            +LVDMYAKC    +A ++F  +  +  V WT M                        IG
Sbjct: 439 NSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIG 498

Query: 233 ANK------------------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
           A+                               ++ +V  G+A++DMYAKCGSI  A ++
Sbjct: 499 ADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQM 558

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M  +N +SW+A+I+AY  +G G   L LF  M+ S + P+ ++ +S+L ACSH GLV
Sbjct: 559 FQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLV 618

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEGL+ F SM   + + P  +HY   +D+L R GR DEA KL+  M  E DE +W ++L 
Sbjct: 619 EEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLN 678

Query: 383 ACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           +C IHKN +LA+ AA  L   +  ++   YV +SN+YA AG W +V K++  M  R +KK
Sbjct: 679 SCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKK 738

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           +P ++W+E+++K H F+  D THPQ  EI + L  L EK+   GY PD++  LH+VDEEV
Sbjct: 739 VPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEV 798

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           KV +L  HSE++AIAF LI+TPEG+ I +MKNLR C DCH+ IK +S I RR I VRD++
Sbjct: 799 KVESLKYHSERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSS 858

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G C+CRDYW
Sbjct: 859 RFHHFRDGFCTCRDYW 874



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 171/375 (45%), Gaps = 56/375 (14%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S      ++ ++RQVH+ ++  G  + L+V+N LL  Y   ++L  A  LFN + ERD
Sbjct: 204 LLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERD 263

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           SV+++ ++ G+SK          F +    G +   +T   ++ A     DI  G+ +H 
Sbjct: 264 SVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHG 323

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------ 230
            V+K     + FV  AL+D Y+K   + +A +LF +MP  D +++ V+            
Sbjct: 324 FVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKE 383

Query: 231 -------------------------IGANKFLLDV-----------------ILGTAVID 248
                                    I A    LD+                 ++G +++D
Sbjct: 384 SLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVD 443

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAKCG    A  IF  +  ++ + W+AMI++Y   G  +  L LF  M  +++  +  T
Sbjct: 444 MYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAAT 503

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           + S++ AC+    +  G +L S +     +  +V   + +VD+  + G + +AL++ + M
Sbjct: 504 YASIVRACASLASLTLGKQLHSHIIGSGYI-SNVFSGSALVDMYAKCGSIKDALQMFQEM 562

Query: 369 SVEKDEGLWGALLGA 383
            V ++   W AL+ A
Sbjct: 563 PV-RNSVSWNALISA 576



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 152/347 (43%), Gaps = 56/347 (16%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  Y     L++A  LF+ M +R +V+W++++GG+++   F   F  F E  
Sbjct: 131 NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMG 190

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G+  D  +L  ++    +   +   R +H  V+K G D    V  +L+D Y K + + 
Sbjct: 191 RHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLG 250

Query: 211 DARQLFDQMPTRDLVTWTVMI------GANK----------------------------- 235
            A QLF+ +P RD VT+  ++      G N+                             
Sbjct: 251 LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGI 310

Query: 236 -------------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                              F+ +V +  A++D Y+K   +  A ++F  M + + IS++ 
Sbjct: 311 QLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNV 370

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++  Y ++G+ K++L+LF  +  +        F +LL   + +  ++ G ++ S      
Sbjct: 371 LVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTD 430

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           A+  ++     +VD+  + G   EA ++   ++++     W A++ +
Sbjct: 431 AI-SEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVP-WTAMISS 475



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 24/237 (10%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   + S + +C ++  +   +Q+H+ I+  G ++N+   + L+ +YA   ++ DA  +F
Sbjct: 500 DAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMF 559

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  R+SVSW+ ++  +++  D       F E +R G+Q DS +L  ++ AC     + 
Sbjct: 560 QEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVE 619

Query: 176 MGRLIHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI-- 231
            G    D + +   L   +   A+ +DM  +    D+A +L  QMP   D + W+ ++  
Sbjct: 620 EGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNS 679

Query: 232 ------------GAN-----KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                        AN     K L D      + ++YA  G  D+  ++   MR++ V
Sbjct: 680 CGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGV 736



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 16/141 (11%)

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++K+G + + +    LV  + +   ++ AR+LFD+MP +++ +   MI            
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMG---------- 141

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                 Y K G++  AR +FD M Q+  ++W+ +I  Y  + Q ++A  LF  M    + 
Sbjct: 142 ------YIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGID 195

Query: 304 PNRITFVSLLYACSHTGLVEE 324
           P+ ++  +LL   +    V E
Sbjct: 196 PDHVSLATLLSGFTEFDSVNE 216


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/619 (36%), Positives = 329/619 (53%), Gaps = 114/619 (18%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL----HKALTDAHALFNGMKERDSV 124
           +CR I  + Q+HA  +  G + + + A ++L   A     H+ L  AH +FN M +R+  
Sbjct: 32  NCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCF 91

Query: 125 SWSVMVGGFS-----KVADFINCFETFR--EFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           SW+ ++ GFS     K    I  F      EF+    + + +T P V++AC     I  G
Sbjct: 92  SWNTIIRGFSESDEDKALIAITLFYEMMSDEFV----EPNRFTFPSVLKACAKTGKIQEG 147

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA------------------------- 212
           + IH + LK G   D+FV + LV MY  C  + DA                         
Sbjct: 148 KQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207

Query: 213 --------------------RQLFDQMPTRDLVTWTVMIGA---NKFL------------ 237
                               R LFD+M  R +V+W  MI     N F             
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267

Query: 238 ---------------------------------------LDVILGTAVIDMYAKCGSIDS 258
                                                  +D +LG+A+IDMY+KCG I+ 
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A  +F+R+ ++NVI+WSAMI  +  HGQ   A+D F  M  + V P+ + +++LL ACSH
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLVEEG R FS M     + P ++HY CMVDLLGR+G LDEA + I +M ++ D+ +W 
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWK 447

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALLGACR+  NV++ +  A  L++  P + G YV LSN+YA+ G W +V+++R  M  + 
Sbjct: 448 ALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKD 507

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           ++K PG + I+++  +H+F V D +HP+++EI  MLV +S+KL LAGY P T   L +++
Sbjct: 508 IRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLE 567

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           EE K   L+ HSEK+A AFGLI+T  G  IRI+KNLR+C DCHS IK +S + +R I VR
Sbjct: 568 EEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVR 627

Query: 559 DANRFHHFEGGACSCRDYW 577
           D  RFHHF+ G+CSC DYW
Sbjct: 628 DRKRFHHFQDGSCSCMDYW 646


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 339/607 (55%), Gaps = 66/607 (10%)

Query: 25  TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIV 84
           + + A++P    QNP+N     Q   +  + +  +    + S    R++ Q  Q+HA I+
Sbjct: 4   STSTAIKP---SQNPLN-----QNSFEQNYRQICN---LLLSFTRSRSLRQGLQLHAHIL 52

Query: 85  AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFE 144
             G  T  +V++ L+ +Y+  +    +  +F+   ++ S +WS ++  F++    +   +
Sbjct: 53  KFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQ 112

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
            FR  +  G++ D +  P   +AC   +   +G+ +H + +K+G   D FV ++LVDMYA
Sbjct: 113 FFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGSSLVDMYA 172

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMI------------------------GANKFLLDV 240
           KC  I DAR LFD+MP R++V+W+ MI                          N F    
Sbjct: 173 KCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDVNDFTFSS 232

Query: 241 IL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           ++                              G+A+I +Y+KCG I+ A ++FD +  +N
Sbjct: 233 VIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRN 292

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           +  W++M+ A   H   ++   LF  M +  + PN I F+S+LYACSH GLVE+G   FS
Sbjct: 293 LGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYFS 352

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M  D+ + P+ +HY  +VDLLGRAG+L EA+ +I+ M +   E +WGALL  CRIHK+ 
Sbjct: 353 LM-RDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDT 411

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           ++A   A  +LE    + G +VLLSN YA AGR+++ A++R ++  R +KK  G +W+E 
Sbjct: 412 EMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEE 471

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            NK+H F+ GD +H +  EIY  L  L E++E AGY+ DT+F L  VD E K   +  HS
Sbjct: 472 GNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHS 531

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LAIAFGLI  P G  IR+MKNLRVCGDCH+ IK +S    RV+IVRD NRFH FE G 
Sbjct: 532 ERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGK 591

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 592 CSCGDYW 598


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 314/575 (54%), Gaps = 56/575 (9%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F  +L +C  +  +R    V  +    G   ++ V + LL++YA   A+ DA  +F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  RD V+WS MV GF      ++  + +R     G++ D   +  VI+AC   +++ 
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           MG  +H  +L+ G+ +D     +LVDMYAK  ++D A ++F  M  R+ V+W+ MI    
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286

Query: 234 ---------------------------------------------------NKFLLDVIL 242
                                                               +F  + IL
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCIL 346

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTA IDMY+KCGS+ SA+ +F+ +  +++I W+AMIA  G HG+G+ AL LF  M  + +
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  TF SLL A SH+GLVEEG   F  M + F + P  KHY C+VDLL R+G ++EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            L+ SM  E    +W ALL  C  +K ++L E  A ++LE QP + G   L+SN+YA   
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W  V ++R LM     KK+PG + IE+    H F + D +HPQ EEI   +  L  ++ 
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GYIP T F  HD++EEVK   L  HSE+LAIAFGL+ T  GT + I+KNLRVCGDCH 
Sbjct: 587 KMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHD 646

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK++S I  R I+VRDA RFHHF+ G CSCRDYW
Sbjct: 647 AIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/487 (42%), Positives = 295/487 (60%), Gaps = 49/487 (10%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           ++  N+++  + L   +  A  +F GMKERD  +W+ M+  F +    +     F    R
Sbjct: 269 IVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQR 328

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
            G+ L+  ++  V+  C     +  GR +H               A LV           
Sbjct: 329 EGVALNFPSMISVLSVCASLASLDHGRQVH---------------ARLV----------- 362

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
            R  FDQ                    D+ + + +I MY KCG +  A+ IF+R   K+V
Sbjct: 363 -RSEFDQ--------------------DLYVASVLITMYVKCGDLVRAKGIFNRFLFKDV 401

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           + W++MI  Y  HG G++AL++F  M SS V P+ +TF+ +L ACS++G V+EG  +F +
Sbjct: 402 VMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEA 461

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   + V P ++HY CMVDLLGRAGR+DEA++L+E M +E D  +WGALLGACR H  +D
Sbjct: 462 MKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLD 521

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE+A + L + +P+N G YVLLS++YA  GRW+DV  +R  + RR + K PG +WIEVE
Sbjct: 522 LAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVE 580

Query: 452 NKIHQFSVGDS-THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            K+H F+ GDS +HP+   I +ML  LS  L  AGY PD +F LHDVDEE K  +L  HS
Sbjct: 581 KKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEEEKTHSLGYHS 640

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LA+A+GL+  PEG  IR+MKNLRVCGDCHS IK ++ +T R II+RDANRFHHF+ G+
Sbjct: 641 ERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDANRFHHFKDGS 700

Query: 571 CSCRDYW 577
           CSC+D+W
Sbjct: 701 CSCKDFW 707



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 165/368 (44%), Gaps = 73/368 (19%)

Query: 52  CQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           C  T ++     I  + + R +F    +  + +A          N ++  Y       DA
Sbjct: 20  CSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIAS--------WNAMVSAYFESHKPRDA 71

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             LF+ M +R++VS++ M+ G+                ++ GM  D+             
Sbjct: 72  LLLFDQMPQRNTVSFNGMISGY----------------VKNGMVADA------------- 102

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
                 R + D++ +  +        ++V  Y +  ++++A +LF +MP R++V+WTVMI
Sbjct: 103 ------RKVFDVMPERNV----VSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMI 152

Query: 232 G----------ANKFL-----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
           G          A K        DV++ T +I  Y + G +D ARE+FD M+ +NV +W+ 
Sbjct: 153 GGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTT 212

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           M++ Y  +G+   A  LF +M       N +++ ++L   + +G ++E   LF +M   +
Sbjct: 213 MVSGYAKNGRVDVARKLFEVMPER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKW 268

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            V  +      M+   G AG +  A  + E M  E+DEG W A++      K +DL  + 
Sbjct: 269 IVACNE-----MILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMIKVFE-RKGLDLEALG 321

Query: 397 AKSLLERQ 404
             + ++R+
Sbjct: 322 LFARMQRE 329



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 41/269 (15%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           A+V  Y +     DA  LFDQMP R+ V++  MI                  Y K G + 
Sbjct: 57  AMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISG----------------YVKNGMVA 100

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR++FD M ++NV+SW++M+  Y   G  ++A  LF  M    V+   +    LL    
Sbjct: 101 DARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLL---- 156

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
               +++  +LF     D     DV   T M+    + GRLDEA +L + M V ++   W
Sbjct: 157 KESRIDDAKKLF-----DMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKV-RNVFTW 210

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
             ++     +  VD+    A+ L E  P+ N   +  +   Y  +GR ++  ++ + M  
Sbjct: 211 TTMVSGYAKNGRVDV----ARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPV 266

Query: 437 RRLKKIPGWTWIEVENK-IHQFSVGDSTH 464
           +         WI   N+ I QF +    H
Sbjct: 267 K---------WIVACNEMILQFGLAGEMH 286



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 9/196 (4%)

Query: 64  ISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           IS L  C ++  +   RQVHA++V      +L VA+ L+ +Y     L  A  +FN    
Sbjct: 339 ISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLF 398

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D V W+ M+ G+S+          F +    G+Q D  T   V+ AC     +  G  I
Sbjct: 399 KDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEI 458

Query: 181 HDIV---LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKF 236
            + +    +    I+ + C  +VD+  +   +D+A +L ++MP   D + W  ++GA + 
Sbjct: 459 FEAMKCTYQVEPGIEHYAC--MVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRN 516

Query: 237 LLDVILGTAVIDMYAK 252
            + + L    ++  AK
Sbjct: 517 HMKLDLAEVAVEKLAK 532



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 24/208 (11%)

Query: 244 TAVIDMYAKCGSIDSAREIFDR--MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           T+ I  Y + G I +AR++FD   + Q+ + SW+AM++AY    + + AL LF  M    
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQR- 81

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
              N ++F  ++      G+V +  ++F     D     +V  +T MV    + G ++EA
Sbjct: 82  ---NTVSFNGMISGYVKNGMVADARKVF-----DVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV---Y 418
            KL   M   ++   W  ++G       +D     AK L +  P+     V+++N+   Y
Sbjct: 134 EKLFWEMP-RRNVVSWTVMIGGLLKESRID----DAKKLFDMIPEK--DVVVVTNMIGGY 186

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
              GR  +    R+L    +++ +  WT
Sbjct: 187 CQVGRLDEA---RELFDEMKVRNVFTWT 211


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/525 (41%), Positives = 314/525 (59%), Gaps = 19/525 (3%)

Query: 56  RSVDP-KFFISSLL-SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           + +DP +F   SL  SC  + + +Q+H      G  ++  + N L+ +Y+    L  A  
Sbjct: 72  QGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARK 131

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M  +  VSW+ M+G +   A +    E  + F R  +  + +    +I    +  D
Sbjct: 132 VFDKMVNKSVVSWATMIGAY---AQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIG 232
                 + + +  SG+  D+   A+L+     C            +   +L  W  V I 
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLL---IACT----------HLGALELGKWLHVYIE 235

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
             K  +DV LGTA++DMYAKCGSI+SA  +F  M +K+V++W+A+I      GQG KAL+
Sbjct: 236 KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALE 295

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  M  S V P+ ITFV +L ACSH GLV EG+  F+SM + + ++P ++HY CMVD+L
Sbjct: 296 LFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDML 355

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAGR+ EA  LI++M +  D  +   LL ACRIH N+ +AE AA+ L+E  P+N G YV
Sbjct: 356 GRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYV 415

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLSN+Y++   W+   K+R+LM  R +KK PG + IEV   +H+F  GD +HPQS EIY 
Sbjct: 416 LLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYE 475

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  +  +L+ AGY+PD +  L D+DE+ K   L  HSEKLAIAFGL++T  GT IR++K
Sbjct: 476 TLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVK 535

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCHS +K +S +  R IIVRD NRFHHF  G+CSCRD+W
Sbjct: 536 NLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 113/257 (43%), Gaps = 51/257 (19%)

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV-------CA------------- 197
           ++T   +IR   ++       L + +++  GLD D+F        C              
Sbjct: 43  TFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHST 102

Query: 198 ------------ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
                        L++MY+ C  +  AR++FD+M  + +V+W  MIGA            
Sbjct: 103 KLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGA------------ 150

Query: 246 VIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
               YA+      A ++F RM    N+  W+ MI  +      ++AL LF  M  S V  
Sbjct: 151 ----YAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKG 206

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           +++T  SLL AC+H G +E G  L   +  +  +  DV   T +VD+  + G ++ A+++
Sbjct: 207 DKVTMASLLIACTHLGALELGKWLHVYIEKE-KIEVDVALGTALVDMYAKCGSIESAMRV 265

Query: 365 IESMSVEKDEGLWGALL 381
            + M  EKD   W AL+
Sbjct: 266 FQEMP-EKDVMTWTALI 281



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 5/130 (3%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           GS+  AR +F+++      + +++I  Y      ++A+  + +M+   + P+R TF SL 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            +C   G++ EG +L            D      ++++    G L  A K+ + M V K 
Sbjct: 86  KSC---GVLCEGKQLHCHS-TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKS 140

Query: 374 EGLWGALLGA 383
              W  ++GA
Sbjct: 141 VVSWATMIGA 150


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 315/560 (56%), Gaps = 59/560 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH   V  G  +++ VAN L+ +Y+       A  +FN MK  D +SW+ M+   ++ 
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 365

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVI-----RACRDRKDIVMGRLIHDIVLKSGLDI 191
           +        F + +  G++ D +TL  +      +AC     +  G+ IH   +K+G D 
Sbjct: 366 SLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 425

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------- 232
           D  V + ++DMY KC  + +A  +F+ +   D V WT MI                    
Sbjct: 426 DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 485

Query: 233 -------------------------------ANKFLLDVI----LGTAVIDMYAKCGSID 257
                                          AN   LD +    +GT+++DMYAKCG+I+
Sbjct: 486 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 545

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A  +F +M  +N+  W+AM+     HG  ++A++LF  M S  + P+R++F+ +L ACS
Sbjct: 546 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 605

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GL  E      SM +D+ + P+++HY+C+VD LGRAG + EA K+IE+M  +    + 
Sbjct: 606 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 665

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            ALLGACRI  +V+  +  A  L   +P +   YVLLSN+YA A RW DV   R +M R+
Sbjct: 666 RALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 725

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            +KK PG++WI+V+N +H F V D +HPQ++ IY  +  + + +   GY+PDT F L DV
Sbjct: 726 NVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDV 785

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           ++E K  +LY HSEKLAIA+GLI+TP  T IR++KNLRVCGDCH+ IK++S +  R I++
Sbjct: 786 EDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVL 845

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RDANRFHHF  G CSC DYW
Sbjct: 846 RDANRFHHFRDGVCSCGDYW 865



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 184/384 (47%), Gaps = 65/384 (16%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH   +  G   ++ V+  L+ IY+    + DA  LF+ M+ERD V W++M+ G+ ++  
Sbjct: 205 VHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGL 264

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRAC--RDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               F+ F EF R G++ D +++  ++  C      D+ +G+ +H I +KSGLD D  V 
Sbjct: 265 EKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVA 324

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKF--------- 236
            +LV+MY+K      AR++F+ M   DL++W  MI +           N F         
Sbjct: 325 NSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLK 384

Query: 237 -----LLDVILGTA----------------------------------VIDMYAKCGSID 257
                L  + L TA                                  ++DMY KCG + 
Sbjct: 385 PDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMV 444

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           +A  +F+ +   + ++W++MI+    +G   +AL ++  M  SRV+P+  TF +L+ A S
Sbjct: 445 NAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 504

Query: 318 HTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
               +E+G +L +++   D    P V   T +VD+  + G +++A +L + M+V ++  L
Sbjct: 505 CVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYRLFKKMNV-RNIAL 561

Query: 377 WGALLGACRIHKNVDLAEMAAKSL 400
           W A+L     H N + A    KS+
Sbjct: 562 WNAMLVGLAQHGNAEEAVNLFKSM 585



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 176/397 (44%), Gaps = 68/397 (17%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + +S  N+   +  HA+IV  G+  +  ++N LL +Y+   +L+ A  +F+   ERD
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 123 SVSWSVMVGGFSKVADFI--NCFETFREFIRCGMQLDS---YTLPFVIRACRDRKDIVMG 177
            V+W+ ++G ++   D    N  E    F      L S    TL  V++ C +   +   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
             +H   +K GL+ D FV  ALV++Y+KC  + DAR LFD M  RD+V W +M+      
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 234 --------------------NKFLLDVIL------------------GTAV--------- 246
                               ++F + +IL                  G AV         
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS 322

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                ++MY+K G    ARE+F+ M+  ++ISW++MI++       +++++LF  +L   
Sbjct: 323 VANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEG 382

Query: 302 VLPNRITFVSLLY-----ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           + P+  T  S+       AC    L+++G ++ +          D+   + ++D+  + G
Sbjct: 383 LKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKA-GFDSDLHVNSGILDMYIKCG 441

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            +  A  +   +S   D   W +++  C  + N D A
Sbjct: 442 DMVNAGIVFNYISAPDDVA-WTSMISGCVDNGNEDQA 477



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 24/219 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q RQ+HA ++    +++  V   L+ +YA    + DA+ LF  M  R+   W+ M+ G +
Sbjct: 511 QGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLA 570

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGL--DI 191
           +  +       F+     G++ D  +   ++ AC            +H +    G+  +I
Sbjct: 571 QHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEI 630

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAVI--- 247
           + + C  LVD   +  ++ +A ++ + MP +   +    ++GA +   DV  G  V    
Sbjct: 631 EHYSC--LVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARL 688

Query: 248 ---------------DMYAKCGSIDSAREIFDRMRQKNV 271
                          ++YA     D   +    M++KNV
Sbjct: 689 FALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNV 727


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 314/575 (54%), Gaps = 56/575 (9%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F  +L +C  +  +R    V  +    G   ++ V + LL++YA   A+ DA  +F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  RD V+WS MV GF      ++  + +R     G++ D   +  VI+AC   +++ 
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           MG  +H  +L+ G+ +D     +LVDMYAK  ++D A ++F  M  R+ V+W+ MI    
Sbjct: 227 MGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFA 286

Query: 234 ---------------------------------------------------NKFLLDVIL 242
                                                               +F  + IL
Sbjct: 287 QNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCIL 346

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTA IDMY+KCGS+ SA+ +F+ +  +++I W+AMIA  G HG+G+ AL LF  M  + +
Sbjct: 347 GTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGM 406

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  TF SLL A SH+GLVEEG   F  M + F + P  KHY C+VDLL R+G ++EA 
Sbjct: 407 RPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEAS 466

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            L+ SM  E    +W ALL  C  +K ++L E  A ++LE QP + G   L+SN+YA   
Sbjct: 467 DLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATK 526

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W  V ++R LM     KK+PG + IE+    H F + D +HPQ EEI   +  L  ++ 
Sbjct: 527 KWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMR 586

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GYIP T F  HD++EEVK   L  HSE+LAIAFGL+ T  GT + I+KNLRVCGDCH 
Sbjct: 587 KMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHD 646

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK++S I  R I+VRDA RFHHF+ G CSCRDYW
Sbjct: 647 AIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681


>gi|297743669|emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 310/594 (52%), Gaps = 100/594 (16%)

Query: 84  VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143
           +  G  ++L V + ++  Y     +  A  +F+GM ERD+V W+ MV G  K + F    
Sbjct: 133 IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAI 192

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
             F + ++ G+  DS T+  V+    + +D+ +G  I  + +K G     +V   L  +Y
Sbjct: 193 LIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLY 252

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWT---------------------VMIGANKFLLDVIL 242
           +KC  I+ AR LF Q+   DLV++                      +++   K     I+
Sbjct: 253 SKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIV 312

Query: 243 G---------------------------------TAVIDMYAKCGSIDSAREIFDRMRQK 269
           G                                 TA+  +Y++   I+SAR +FD   +K
Sbjct: 313 GLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEK 372

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFP---------------------------------- 295
           ++ SW+AMI+ Y  +G  +KA+ LF                                   
Sbjct: 373 SLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVH 432

Query: 296 ------------MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
                        ML SRV P  +TF+S+LYACSH GLV EG  +F SM  D    P  +
Sbjct: 433 DLINRESFESNIFMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPE 492

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           HY CMVDLLGRAG LD+AL  I  M VE    +WGALLGAC IHK+ +LA +A+  L E 
Sbjct: 493 HYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFEL 552

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
            PQN G+YVLLSN+Y+    + + A +R ++ RR+L K PG T IEV N +H F+ GD +
Sbjct: 553 DPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQS 612

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HPQ+  IY ML  L+ K+  AG+  +T   LHDV+EE K   +  HSEKLAIAFGLI + 
Sbjct: 613 HPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSE 672

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRFHHF+ G CSC DYW
Sbjct: 673 PGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 172/445 (38%), Gaps = 77/445 (17%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
             F++ +     + Q+ Q HAQI+  G   +L+   KL +  +  KA+  A  LF+ +  
Sbjct: 11  NLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPN 70

Query: 121 RDSVSWSVMVGGFS---KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
            D   ++V++  FS     +  ++ +   R+     ++ D++T  FVI         ++ 
Sbjct: 71  PDLFLYNVLIRAFSLNNSPSSAVSLYTHLRK--STPLEPDNFTYAFVISGASSLGLGLLL 128

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
                +   +G   D FV +A+V  Y K   +  AR++FD M  RD V W  M+      
Sbjct: 129 HAHSIV---AGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKN 185

Query: 232 ---------------GANKF--------------LLDVILG------------------- 243
                          G   F              L D+ LG                   
Sbjct: 186 SCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVI 245

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           T +  +Y+KCG I++AR +F ++ Q +++S++AMI+ Y  + + + ++ LF  +L S   
Sbjct: 246 TGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEK 305

Query: 304 PNRITFVSLL---YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            N  + V L+   +   H  L     R          V  +    T +  +  R   ++ 
Sbjct: 306 VNSSSIVGLIPVFFPFGHLHLT----RCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIES 361

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP----QNPGHYVLLSN 416
           A +L+   S EK    W A++     +    L E A     E Q      NP     + +
Sbjct: 362 A-RLLFDESSEKSLASWNAMISG---YAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILS 417

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKK 441
             A  G       + DL+ R   + 
Sbjct: 418 ACAQLGALSLGKWVHDLINRESFES 442


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/554 (38%), Positives = 305/554 (55%), Gaps = 57/554 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H+     G  ++  V    + +Y+    +  A  LF   +  D V+++ M+ G++   
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNG 301

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           +       F+E +  G +L S TL  ++        +++   IH   LKS       V  
Sbjct: 302 ETELSLSLFKELMLSGAKLKSSTLVSLVPVS---GHLMLIYAIHGYSLKSNFLSHTSVST 358

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDL--------------------------------- 224
           AL  +Y+K   I+ AR+LFD+ P + L                                 
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSP 418

Query: 225 --VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
             VT T ++ A                     F   + + TA+I MYAKCGSI  AR +F
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M +KN ++W+ MI+ YG HG G++AL +F  ML+S + P  +TF+ +LYACSH GLV+
Sbjct: 479 DFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVK 538

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG  +F+SM   +   P VKHY C+VD+LGRAG L  AL+ IE+M ++    +W  LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGA 598

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CRIHK+ +LA   ++ L E  P N G++VLLSN+++    +   A +R    +R+L K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G+T IE+    H F+ GD +HPQ + I+  L  L  K+  AGY P+T   LHDV+EE + 
Sbjct: 659 GYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERE 718

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             +  HSE+LAIAFGLIAT  GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRF 778

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 779 HHFKDGVCSCGDYW 792



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 161/361 (44%), Gaps = 54/361 (14%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H Q +  G  + L++ + ++ +Y     + DA  +F+ M E+D++ W+ M+ G+ K   
Sbjct: 141 IHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200

Query: 139 FINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           ++   + FR+ I     +LD+ TL  ++ A  + +++ +G  IH +  K+G     +V  
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLT 260

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------------------GA-- 233
             + +Y+KC  I  A  LF +    D+V +  MI                      GA  
Sbjct: 261 GFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKL 320

Query: 234 ---------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
                                      + FL    + TA+  +Y+K   I+SAR++FD  
Sbjct: 321 KSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDES 380

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
            +K++ SW+AMI+ Y  +G  + A+ LF  M +S   PN +T   +L AC+  G +  G 
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG- 439

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           +    +         +   T ++ +  + G + EA +L + M  +K+E  W  ++    +
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGL 498

Query: 387 H 387
           H
Sbjct: 499 H 499



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 152/370 (41%), Gaps = 65/370 (17%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           +I  + Q HAQIV  G   ++ +  KL    +   A+  A  +F  ++  D   ++V++ 
Sbjct: 32  SISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR 91

Query: 132 GFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           GFS      +    F    +   ++ +S T  F I A    +D   G +IH   +  G D
Sbjct: 92  GFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCD 151

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK--------------- 235
            +  + + +V MY K   ++DAR++FD+MP +D + W  MI   +               
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 236 -----------FLLDVI----------LG-------------------TAVIDMYAKCGS 255
                       LLD++          LG                   T  I +Y+KCG 
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I  A  +F   R+ ++++++AMI  Y  +G+ + +L LF  ++ S       T VSL+  
Sbjct: 272 IKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPV 331

Query: 316 CSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
             H  L+    G  L S+     +V       T +  +  +   ++ A KL +  S EK 
Sbjct: 332 SGHLMLIYAIHGYSLKSNFLSHTSVS------TALTTVYSKLNEIESARKLFDE-SPEKS 384

Query: 374 EGLWGALLGA 383
              W A++  
Sbjct: 385 LPSWNAMISG 394


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/538 (38%), Positives = 316/538 (58%), Gaps = 71/538 (13%)

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-------- 157
           + L  A  LF+ M +RD  +WS +V G+++          +R      MQ +        
Sbjct: 109 RHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRR-----MQEEPGNDGADN 163

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI---DQFVCAALVDMYAKCKVIDDARQ 214
            +T    + A    +    GR +H  V++ G+D    D  + +AL DMYAKC  +DDAR+
Sbjct: 164 EFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARR 223

Query: 215 LFDQMPTRDLVTWTVM-------------------------IGANKFLLDVIL------- 242
           +FD+MP RD V+WT M                         +  N+F    +L       
Sbjct: 224 VFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFA 283

Query: 243 ---------------GT--------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                          GT        A++ MY+KCG + SA  +F+ M + +++SW+A+I+
Sbjct: 284 VESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVIS 343

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y  +GQ ++AL  F M L S + P+ +TFV +L AC+H GLV++GL +F S+ + + + 
Sbjct: 344 GYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIE 403

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
               HY C++DLL R+G+ + A K+I +M+V+ ++ LW +LLG CRIHKNV LA  AA++
Sbjct: 404 HTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEA 463

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           L E +P+NP  YV L+N+YA+ G + +V  +R +M  + + K+P  +WIEV  ++H F V
Sbjct: 464 LFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLV 523

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           GD +HP+++EIY +L  L  K+   GY+ D  F LHDV++E K  ++  HSE+LA+AFG+
Sbjct: 524 GDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGI 583

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IATPEG+ I++ KNLR+CGDCH+ IK +S I +R IIVRD+NRFHHF+ G CSCRDYW
Sbjct: 584 IATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 22/253 (8%)

Query: 55  TRSVDP-KFFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           TR V P +F  + +L     F +    RQVH ++   GT  +    + LL +Y+    + 
Sbjct: 262 TRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMG 321

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  +F  M + D VSW+ ++ G+++          F  F+R G++ D  T   V+ AC 
Sbjct: 322 SAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACA 381

Query: 170 DRKDIVMG-RLIHDIVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
               +  G  + H I  +  ++   D + C  ++D+ ++    + A ++   M  +    
Sbjct: 382 HAGLVDKGLEIFHSIKEQYCIEHTADHYAC--VIDLLSRSGQFERAEKMIGNMAVK---- 435

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                  NKFL   +LG   I  +   G    A E    +  +N  ++  +   Y   G 
Sbjct: 436 ------PNKFLWASLLGGCRI--HKNVGLARRAAEALFEIEPENPATYVTLANIYASVGL 487

Query: 287 GKKALDLFPMMLS 299
             +  D+  +M S
Sbjct: 488 FDEVEDVRRIMES 500


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/535 (40%), Positives = 316/535 (59%), Gaps = 33/535 (6%)

Query: 69  SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           SC     I R++H      G  + L V N L+ +Y     L++A  + + M  RD VSW+
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK-DIVMGRLIHDIVLK 186
            +V G+++   F +  E  RE     +  D+ T+  ++ A  +   + VM   + D+  K
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM--YVKDMFFK 268

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGA--------- 233
            G          ++ +Y K  +  +A +L+ +M       D V+ T ++ A         
Sbjct: 269 MGKK-SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 234 ----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                      K + +++L  A+IDMYAKCG ++ AR++F+ M+ ++V+SW+AMI+AYG+
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGF 387

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
            G+G  A+ LF  +  S ++P+ I FV+ L ACSH GL+EEG   F  M D + + P ++
Sbjct: 388 SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE 447

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           H  CMVDLLGRAG++ EA + I+ MS+E +E +WGALLGACR+H + D+  +AA  L + 
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
            P+  G+YVLLSN+YA AGRW++V  IR++M  + LKK PG + +EV   IH F VGD +
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HPQS+EIYR L  L +K++  GY+PD+   LHDV+EE K  +L  HSEKLAI F L+ T 
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627

Query: 524 E-----GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           E        IRI KNLR+CGDCH   K +S IT R II+RD NRFH F  G CSC
Sbjct: 628 EEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 159/333 (47%), Gaps = 23/333 (6%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           +I  +R VH++I+      N  +  KL+  YA  K +  A  +F+ + ER+ +  +VM+ 
Sbjct: 54  DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +     +    + F     C ++ D YT P V++AC     IV+GR IH    K GL  
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFL---LDVILGTA 245
             FV   LV MY KC  + +AR + D+M  RD+V+W  ++     N+     L+V     
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233

Query: 246 VIDMYAKCGSIDS---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
            + +    G++ S                +++F +M +K+++SW+ MI  Y  +    +A
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           ++L+  M +    P+ ++  S+L AC  T  +  G ++   +     + P++     ++D
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLI-PNLLLENALID 352

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +  + G L++A  + E+M   +D   W A++ A
Sbjct: 353 MYAKCGCLEKARDVFENMK-SRDVVSWTAMISA 384


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 310/555 (55%), Gaps = 55/555 (9%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            QVH   +  G + +  V+  L+ +Y+    + +A  L +G  + D  SW+ ++ G+ K  
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 138  DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                  E F      G+ +D  TL   I+A     ++  G+ I    +K G + D +V +
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 198  ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
             ++DMY KC  + +A +LF ++   D V WT M                           
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 231  -----------------------IGAN----KFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                                   I AN     + LD  +GT+++DMY KCGS+  A  +F
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 264  DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             +M  + V+ W+AM+     HG   +AL+LF  M S+ + P+++TF+ +L ACSH+GL  
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 324  EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            E  + F +M+  + + P+++HY+C+VD LGRAGR+ EA  +I SM  +    ++ ALLGA
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378

Query: 384  CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            CR   + + A+  A  LL   P +   YVLLSN+YA + +W DV   R++M  + +KK P
Sbjct: 1379 CRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDP 1438

Query: 444  GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVDEEVK 502
            G++WI+V+NK+H F V D +HPQ+  IY  +  L +++ E   Y+PDT+F L DV+EE K
Sbjct: 1439 GFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEK 1498

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               LY HSEKLAIAFGLI+TP    IR++KNLRVCGDCHS IK +S +T+R I++RDANR
Sbjct: 1499 ERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANR 1558

Query: 563  FHHFEGGACSCRDYW 577
            FHHF  G CSC DYW
Sbjct: 1559 FHHFRNGTCSCGDYW 1573



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 170/378 (44%), Gaps = 67/378 (17%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             Q+HA ++       + V+N L+ +Y+    +  A   F    E D +SW+ M+  +++ 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD---IVMGRLIHDIVLKSGLDIDQ 193
               +    TFR+ +R G++ D +TL  V+RAC    +     +G  +H   +K G+  D 
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 194  FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----IGANK-------------- 235
            FV  AL+D+Y+K   +D+A  L       DL +W  +    I +NK              
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 236  ------------------------------------FLLDVILGTAVIDMYAKCGSIDSA 259
                                                F  D+ + + V+DMY KCG + +A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 260  REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             E+F  + + + ++W+ MI+ Y  +G    AL ++ +M  S V P+  TF +L+ A S  
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 320  GLVEEGLRLFSSMWDDFAVRPD--VKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
              +E+G ++ +++     V+ D  + H+  T +VD+  + G + +A ++   M V K   
Sbjct: 1214 TALEQGKQIHANV-----VKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VV 1267

Query: 376  LWGALLGACRIHKNVDLA 393
             W A+L     H +VD A
Sbjct: 1268 FWNAMLLGLAQHGHVDEA 1285



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 169/374 (45%), Gaps = 39/374 (10%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            ++ HA+IV  G L +  + N L+ +Y+   +L  A  +F+   +RD V+W+ ++  +++ 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 137  AD--FINCFETFREF---IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            AD  + N  E FR F      G  +   TL  +++ C     + +   +H   +K G ++
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 192  DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI------- 241
            D FV  ALV++Y K  ++  AR LFD+MP RD V W VM+ A   N F  + +       
Sbjct: 751  DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810

Query: 242  ---LGTAVIDMYAKCGSIDS----------------AREIFDRMRQKNVISWSAMIAAYG 282
                     +++   G ++S                A ++F   +  N+ +W+  +  + 
Sbjct: 811  RSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFL 870

Query: 283  YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPD 341
            + GQ   A+D F  +L S +  + +T V +L A      ++ G ++ +  +   FA  P 
Sbjct: 871  HAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA--PV 928

Query: 342  VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
            V     ++++  +AG +  A K   + S E D   W  ++ +     N+++  +     L
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMI-SSYAQNNLEMEAICTFRDL 986

Query: 402  ERQPQNPGHYVLLS 415
             R    P  + L S
Sbjct: 987  LRDGLKPDQFTLAS 1000



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
           D+ +G+  H  ++ SG   D+++   L+ MY+KC  +  ARQ+FD+   RDLVTW  ++ 
Sbjct: 626 DLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 233 A 233
           A
Sbjct: 686 A 686


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/611 (36%), Positives = 324/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +  +R   Q+HAQ++      +  VA+ L+ +YA      +A  +
Sbjct: 288 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 347

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           FN + +R++V+W+V++ GF +   F    E F +     M LD + L  +I  C  R D+
Sbjct: 348 FNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDL 407

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
            +GR +H + LKSG      V  +L+ MYAKC  +  A                      
Sbjct: 408 CLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAY 467

Query: 213 ---------RQLFDQMPTRDLVTWTVMIG------------------------------- 232
                    R+ FD M  ++++TW  M+G                               
Sbjct: 468 SQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTY 527

Query: 233 -----------ANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                      ANK              ++D  +  AVI MY+KCG I  AR++FD +  
Sbjct: 528 VTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNV 587

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+++SW+AMI  Y  HG GK+A+++F  +L     P+ I++V++L  CSH+GLV+EG   
Sbjct: 588 KDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFY 647

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  M     + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+IH 
Sbjct: 648 FDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHG 707

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK + E    + G Y+L++ +YA+AG+  D A+IR LM  + +KK PG++W+
Sbjct: 708 NNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWM 767

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNL 506
           EV+NK+H F   D +HPQ   I + L  L EK+   GY+    T  E+H           
Sbjct: 768 EVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYVRTDSTRSEIH----------- 816

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFGL+  P    I IMKNLR+CGDCH+ IK +S +T R  ++RDA RFHHF
Sbjct: 817 --HSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHF 874

Query: 567 EGGACSCRDYW 577
            GG+CSC DYW
Sbjct: 875 NGGSCSCGDYW 885



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 137/307 (44%), Gaps = 58/307 (18%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y     +  A  LF+ M ERD VSW++MV   S+        +   +    G++
Sbjct: 228 NSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 287

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V+++   ID +V +ALV++YAK     +A+ +
Sbjct: 288 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 347

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL-----------DV 240
           F+ +  R+ V WTV+I                          ++F L           D+
Sbjct: 348 FNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDL 407

Query: 241 ILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
            LG                    ++I MYAKC ++ SA  IF  M +K+++SW++MI AY
Sbjct: 408 CLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAY 467

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G   KA + F  M       N IT+ ++L A    G  E+GLR++  M  +  VRPD
Sbjct: 468 SQVGNVAKAREFFDGMSE----KNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPD 523

Query: 342 VKHYTCM 348
              Y  +
Sbjct: 524 WVTYVTL 530



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 149/322 (46%), Gaps = 26/322 (8%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + LSC  +   R++    +A     N+I  N +L  YA    L+DA  LF  M  RD
Sbjct: 65  LLHAYLSCGALSDARRLLLMDIAH---PNVITHNVMLNGYAKLGRLSDAVELFGRMPARD 121

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIH 181
             SW+ ++ G+ +   ++   ETF    R G    +++TL   +++C       +   + 
Sbjct: 122 VASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL 181

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
            +V K     D  V AALVDM+ +C  +D A +LF ++    +     M+          
Sbjct: 182 AMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG-------- 233

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                   Y K   +D A E+FD M +++V+SW+ M++A    G+ ++ALD+   M S  
Sbjct: 234 --------YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKG 285

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLD 359
           V  +  T+ S L AC+    +  G +L + +  +    P +  Y  + +V+L  ++G   
Sbjct: 286 VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFK 342

Query: 360 EALKLIESMSVEKDEGLWGALL 381
           EA  +  S+  +++   W  L+
Sbjct: 343 EAKGVFNSLH-DRNNVAWTVLI 363


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/546 (38%), Positives = 307/546 (56%), Gaps = 56/546 (10%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           +L + +    L+  Y     L DA  LF+ +  +D VSW+ M+ G+ +   F      F 
Sbjct: 193 SLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
           E     +  +  T+  V+ AC   +   +G+ I   V  +G   +  +  AL+DMY KC 
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCG 312

Query: 208 VIDDARQLFDQMPTRDLVTWT--------------------VMIGANKFLLDVI------ 241
             D AR+LFD +  +D+++W                     VM+ +N    DV       
Sbjct: 313 ETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILH 372

Query: 242 -----------------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                        L T++IDMYAKCG I++A  +F  M  +N+ 
Sbjct: 373 ACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLA 432

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSS 331
           SW+AM++ +  HG  ++AL LF  M++  +  P+ ITFV +L AC+  GLV+ G + F S
Sbjct: 433 SWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRS 492

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M  D+ + P ++HY CM+DLL RA + +EA  L+++M +E D  +WG+LL AC+ H  V+
Sbjct: 493 MIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVE 552

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
             E  A+ L + +P+N G +VLLSN+YA AGRW DVA+IR  +  + +KK+PG T IE++
Sbjct: 553 FGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEID 612

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
             +H+F VGD  HP+   IY+ML  + + LE  G++P+T+  L+D+DEE K G L  HSE
Sbjct: 613 GDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSE 672

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLAI+FGLI T  GT IRI+KNLRVCG+CHS  K +S I  R II RD NRFHHF+ G C
Sbjct: 673 KLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFC 732

Query: 572 SCRDYW 577
           SC D W
Sbjct: 733 SCNDCW 738



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 199/451 (44%), Gaps = 103/451 (22%)

Query: 53  QFTRSVDPKF-------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
            F  + DP +       +++ L  C+NI   +Q+H+ I+  G    + V +KL++  A+ 
Sbjct: 14  HFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVS 73

Query: 106 KA--LTDAHALF--NGMKERDSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
            +  L+ A +LF  N    + +V  W+ ++ G+S  +  ++    F   +  G+Q +S+T
Sbjct: 74  PSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHT 133

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-------------- 206
            PF+ ++C   K    G+ +H   LK  L  +  V  +++ MYA                
Sbjct: 134 FPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSS 193

Query: 207 -----------------KVIDDARQLFDQMPTRDLVTWTVMIGA---------------- 233
                              +DDAR+LFD++P +D+V+W  MI                  
Sbjct: 194 LRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYE 253

Query: 234 --------NKFLLDVILG------------------------------TAVIDMYAKCGS 255
                   NK  + V+L                                A+IDMY KCG 
Sbjct: 254 MQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGE 313

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
            D ARE+FD + +K+VISW+ MI  Y Y    ++AL LF +ML S V PN +TF+ +L+A
Sbjct: 314 TDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHA 373

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+  G ++ G  + + +  +     +   +T ++D+  + G ++ A ++  SM   ++  
Sbjct: 374 CACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMH-SRNLA 432

Query: 376 LWGALLGACRIHKNVD-----LAEMAAKSLL 401
            W A+L    +H + +      +EM  K L 
Sbjct: 433 SWNAMLSGFAMHGHAERALALFSEMVNKGLF 463


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 310/555 (55%), Gaps = 55/555 (9%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            QVH   +  G + +  V+  L+ +Y+    + +A  L +G  + D  SW+ ++ G+ K  
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 138  DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                  E F      G+ +D  TL   I+A     ++  G+ I    +K G + D +V +
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 198  ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
             ++DMY KC  + +A +LF ++   D V WT M                           
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 231  -----------------------IGAN----KFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                                   I AN     + LD  +GT+++DMY KCGS+  A  +F
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 264  DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             +M  + V+ W+AM+     HG   +AL+LF  M S+ + P+++TF+ +L ACSH+GL  
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 324  EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            E  + F +M+  + + P+++HY+C+VD LGRAGR+ EA  +I SM  +    ++ ALLGA
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378

Query: 384  CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            CR   + + A+  A  LL   P +   YVLLSN+YA + +W DV   R++M  + +KK P
Sbjct: 1379 CRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDP 1438

Query: 444  GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVDEEVK 502
            G++WI+V+NK+H F V D +HPQ+  IY  +  L +++ E   Y+PDT+F L DV+EE K
Sbjct: 1439 GFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEK 1498

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               LY HSEKLAIAFGLI+TP    IR++KNLRVCGDCHS IK +S +T+R I++RDANR
Sbjct: 1499 ERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANR 1558

Query: 563  FHHFEGGACSCRDYW 577
            FHHF  G CSC DYW
Sbjct: 1559 FHHFRNGTCSCGDYW 1573



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 170/378 (44%), Gaps = 67/378 (17%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             Q+HA ++       + V+N L+ +Y+    +  A   F    E D +SW+ M+  +++ 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD---IVMGRLIHDIVLKSGLDIDQ 193
               +    TFR+ +R G++ D +TL  V+RAC    +     +G  +H   +K G+  D 
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 194  FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----IGANK-------------- 235
            FV  AL+D+Y+K   +D+A  L       DL +W  +    I +NK              
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 236  ------------------------------------FLLDVILGTAVIDMYAKCGSIDSA 259
                                                F  D+ + + V+DMY KCG + +A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 260  REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             E+F  + + + ++W+ MI+ Y  +G    AL ++ +M  S V P+  TF +L+ A S  
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 320  GLVEEGLRLFSSMWDDFAVRPD--VKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
              +E+G ++ +++     V+ D  + H+  T +VD+  + G + +A ++   M V K   
Sbjct: 1214 TALEQGKQIHANV-----VKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VV 1267

Query: 376  LWGALLGACRIHKNVDLA 393
             W A+L     H +VD A
Sbjct: 1268 FWNAMLLGLAQHGHVDEA 1285



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 170/374 (45%), Gaps = 39/374 (10%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            ++ HA+IV  G L +  + N L+ +Y+   +L  A  +F+   +RD V+W+ ++  +++ 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 137  AD--FINCFETFREF---IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            AD  + N  E FR F      G  +   TL  +++ C     + +   +H   +K G ++
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 192  DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVILGTAVI- 247
            D FV  ALV++Y K  ++  AR LFD+MP RD V W VM+ A   N F  + +   +   
Sbjct: 751  DLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFH 810

Query: 248  ---------DMYAKCGSIDS----------------AREIFDRMRQKNVISWSAMIAAYG 282
                     +++   G ++S                A ++F   +  N+ +W+  +  + 
Sbjct: 811  RSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFL 870

Query: 283  YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPD 341
            + GQ   A+D F  +L S +  + +T V +L A      ++ G ++ +  +   FA  P 
Sbjct: 871  HAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA--PV 928

Query: 342  VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
            V     ++++  +AG +  A K   + S E D   W  ++ +     N+++  +     L
Sbjct: 929  VPVSNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMI-SSYAQNNLEMEAICTFRDL 986

Query: 402  ERQPQNPGHYVLLS 415
             R    P  + L S
Sbjct: 987  LRDGLKPDQFTLAS 1000



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 38/61 (62%)

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
           D+ +G+  H  ++ SG   D+++   L+ MY+KC  +  ARQ+FD+   RDLVTW  ++ 
Sbjct: 626 DLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 233 A 233
           A
Sbjct: 686 A 686


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/572 (37%), Positives = 314/572 (54%), Gaps = 85/572 (14%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N++ +N ++ +      + +A  LFN M E+D VSWS ++ G+ +   +      F E  
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA------ 204
             GM+LD   +  V+ AC     +  G++IH +V++ G++    +  AL+ MY+      
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 205 -------------------------KCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
                                    KC  ++ AR LFD MP +D+V+W+ +I        
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDC 416

Query: 234 -------------------NKFLLDVI-----------------------------LGTA 245
                                 L+ VI                             LGT 
Sbjct: 417 FSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTT 476

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++DMY KCG +++A E+F+ M +K V SW+A+I     +G  +++LD+F  M ++ V+PN
Sbjct: 477 LLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPN 536

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            ITF+ +L AC H GLV+EG   F+SM +   + P+VKHY CMVDLLGRAG L+EA KLI
Sbjct: 537 EITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLI 596

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           ESM +  D   WGALLGAC+ H + ++ E   + L+E QP + G +VLLSN++A+ G W+
Sbjct: 597 ESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWE 656

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           DV ++R +M ++ + K PG + IE    +H+F  GD THP   ++  ML  ++++L++ G
Sbjct: 657 DVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEG 716

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y PDTN    D+DEE K   L+ HSEKLAIAFGL+     T IRIMKNLR+C DCH+  K
Sbjct: 717 YAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAK 776

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S    R I+VRD +RFH+F+ GACSC DYW
Sbjct: 777 LISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 181/370 (48%), Gaps = 23/370 (6%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDA 111
           F  ++      + L +C N+ Q  ++ +Q++  G +++   A++LL          L  +
Sbjct: 35  FKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYS 94

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F+ ++  +   W+ M+  + +          ++  ++  +  D+YT P V++AC  R
Sbjct: 95  LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 154

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
                G+ IHD VLK G D D +V   L++MYA C  + DAR+LFD+ P  D V+W  ++
Sbjct: 155 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 214

Query: 232 GA---------NKFLLD------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                       K + D      ++   ++I +  K G +  A ++F+ M +K+++SWSA
Sbjct: 215 AGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSA 274

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +I+ Y  +G  ++AL +F  M ++ +  + +  VS+L AC+H  +V+ G ++   +    
Sbjct: 275 LISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG-KMIHGLVIRM 333

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            +   V     ++ +   +G + +A KL    S   D+  W +++  C    +V+     
Sbjct: 334 GIESYVNLQNALIHMYSGSGEIMDAQKLFNG-SHNLDQISWNSMISGCMKCGSVE----K 388

Query: 397 AKSLLERQPQ 406
           A++L +  P+
Sbjct: 389 ARALFDVMPE 398



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 105/237 (44%), Gaps = 23/237 (9%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    +S + +C ++  + Q   VHA I   G   N+I+   LL +Y     + +A  +F
Sbjct: 435 DETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVF 494

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           NGM+E+   SW+ ++ G +         + F E    G+  +  T   V+ ACR    + 
Sbjct: 495 NGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVD 554

Query: 176 MGRL-IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA 233
            GR     ++ K G++ +      +VD+  +  ++++A +L + MP   D+ TW  ++GA
Sbjct: 555 EGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGA 614

Query: 234 NKFLLDVILGTAV------------------IDMYAKCGSIDSAREIFDRMRQKNVI 272
            K   D  +G  V                   +++A  G  +   E+   M+Q+ V+
Sbjct: 615 CKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVV 671


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/599 (37%), Positives = 333/599 (55%), Gaps = 67/599 (11%)

Query: 36  EQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVA 95
           E  P +P +  ++G           K  +S L  C N+ + +Q HA+I+  G   +   A
Sbjct: 17  EDPPQSPELSFKLGE----------KECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCA 66

Query: 96  NKLLYIYALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           + L+   AL    ++  A ++F  M E  S  ++ M+ G  K  +      T++E    G
Sbjct: 67  SNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERG 126

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           ++ D++T P +++AC     +  G  +H  +LK GL+ D FV  +L+ MY KC  I    
Sbjct: 127 VKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCC 186

Query: 214 QLFDQMPTRD------LVTWTVMIG----------------------------------- 232
            +F+QM  R       L+T    +G                                   
Sbjct: 187 AVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHL 246

Query: 233 --------ANKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                    + FLL      +VI+ T++I+MY KCGS+     +F +M +KN +S+S MI
Sbjct: 247 GALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMI 306

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           +    HG G++ L +F  ML   + P+ I +V +L ACSH GLV+EGL+ F+ M  +  +
Sbjct: 307 SGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGI 366

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P ++HY CMVDL+GRAG++DEAL+LI+SM +E ++ LW +LL A ++H N+   E+AAK
Sbjct: 367 EPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAK 426

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L +   Q    YV+LSN+YA A RW+DVAK R  M  + L + PG++ +EV+ K+H+F 
Sbjct: 427 QLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 486

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
             D+ HPQSE +Y ML  +  +L+  GY PDT   L DVDEE K   L  HS+KLAIA+ 
Sbjct: 487 SQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYA 546

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI T +G+ IRI++NLR+C DCH++ K +S I  R I VRD +RFHHF+ GACSCRDYW
Sbjct: 547 LIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/557 (39%), Positives = 306/557 (54%), Gaps = 59/557 (10%)

Query: 80  HAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           HA++V    TL + +    L+  Y     + DA  LF+ +  +D VSW+ M+ G+ +   
Sbjct: 180 HARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGR 239

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F      F       +  +  T+  V+ AC   + + +G+ I   V   G   +  +  A
Sbjct: 240 FEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNA 299

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------NKFLLDVILGT----- 244
           LVDMY+KC  I  AR+LFD M  +D++ W  MIG             L +V+L       
Sbjct: 300 LVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPN 359

Query: 245 -----AVIDMYAKCGSID---------------------------------------SAR 260
                AV+   A  G++D                                        A 
Sbjct: 360 DVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAE 419

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++F  M  +++ SW+AMI+    +G  ++AL LF  M++    P+ ITFV +L AC+  G
Sbjct: 420 QVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAG 479

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE G R FSSM  D+ + P ++HY CM+DLL R+G+ DEA  L+ +M +E D  +WG+L
Sbjct: 480 FVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSL 539

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L ACRIH  V+  E  A+ L E +P+N G YVLLSN+YA AGRW DVAKIR  +  + +K
Sbjct: 540 LNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMK 599

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K+PG T IE++  +H+F VGD  HPQSE I+RML  +   LE  G++PDT+  L+D+DEE
Sbjct: 600 KVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEE 659

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K G L  HSEKLAIAFGLI+T  G+ IRI+KNLRVC +CHS  K +S I  R II RD 
Sbjct: 660 WKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDR 719

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSC D W
Sbjct: 720 NRFHHFKDGFCSCNDRW 736



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 189/419 (45%), Gaps = 37/419 (8%)

Query: 50  PDCQFTRSVDPKF-------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102
           P   F  S DP +        ++ L  C +I  ++Q+H+ I+  G    L   +KL+   
Sbjct: 8   PFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFC 67

Query: 103 ALHKA--LTDAHALFNGMKER--DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS 158
           AL  +  L+ A +LF+ +  +  +   W+ ++   S      +    F + +  G+  +S
Sbjct: 68  ALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNS 127

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           +T P + ++C   K     + +H   LK  L +   V  +L+ MY++   +  AR +FD+
Sbjct: 128 HTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDK 187

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
              RD V++                TA+I  Y   G +D AR +FD +  K+V+SW+AMI
Sbjct: 188 STLRDAVSF----------------TALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMI 231

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           A Y   G+ ++AL  F  M  + V PN+ T VS+L AC H   +E G +   S   D   
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELG-KWIGSWVRDRGF 290

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
             +++    +VD+  + G +  A KL + M  +KD  LW  ++G    H ++    +   
Sbjct: 291 GKNLQLVNALVDMYSKCGEIGTARKLFDGME-DKDVILWNTMIGG-YCHLSLYEEALVLF 348

Query: 399 SLLERQPQNPGHYVLLSNVYANA-------GRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
            ++ R+   P     L+ + A A       G+W      ++L     +  +  WT I V
Sbjct: 349 EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIV 407


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 326/572 (56%), Gaps = 57/572 (9%)

Query: 63  FISSLLSC--RNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S L +C    +F + + VH        L  L V  +L+ +Y     + DA  +F  M 
Sbjct: 249 FASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP 308

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           + D + WS M+  +++        E F    R  +  + +TL  +++AC    D+ +G  
Sbjct: 309 KDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQ 368

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMI------- 231
           IH  V+K GLD++ FV  AL+DMYAKC  ++++ QLF + P    V+W TV++       
Sbjct: 369 IHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGN 428

Query: 232 GANKFLL----------------------------------------------DVILGTA 245
           G    +L                                              + ++G A
Sbjct: 429 GEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNA 488

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +IDMYAKCG+I  AR +FD +R+ + +SW+AMI+ Y  HG   +AL  F  ML +   P+
Sbjct: 489 LIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPD 548

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           ++TFV +L ACS+ GL++ G   F SM +++ + P  +HYTCMV LLGR+G LD+A KL+
Sbjct: 549 KVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLV 608

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
             +  E    +W ALL AC IH +V+L  ++A+ +LE +P++   +VLLSN+YANA RW 
Sbjct: 609 HEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWG 668

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           +VA IR  M R+ ++K PG +WIE + ++H FSVGD++HP ++ I  ML  L+ K    G
Sbjct: 669 NVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWLNMKARNEG 728

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PD +  L DV++  K   L+ HSE+LA+A+GLI TP  + +RI+KNLR+C DCH+ IK
Sbjct: 729 YVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRICADCHAAIK 788

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S I +R II+RD NRFHHF  G CSC DYW
Sbjct: 789 LISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 172/384 (44%), Gaps = 56/384 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H +I+  G   +L   N LL  Y  + +L DA  LF+ M +R++VS+  ++ G+S+ 
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQC 123

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F      F      G +L+ +    V++     +   +G  +H  V K G D D FV 
Sbjct: 124 LRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVG 183

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+D Y+ C   + ARQ+FD +  +D+V+WT M+                         
Sbjct: 184 TALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFK 243

Query: 234 -NKF------------------------------LLDVILGTAVIDMYAKCGSIDSAREI 262
            N F                              L ++ +G  +ID+Y K G +D A ++
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQV 303

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M + +VI WS MIA Y    Q ++A+++F  M    VLPN+ T  SLL AC+    +
Sbjct: 304 FEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDL 363

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           + G ++   +     +  +V     ++D+  + GR++ +L+L  S S    +  W  ++ 
Sbjct: 364 QLGNQIHCHVV-KVGLDMNVFVSNALMDMYAKCGRMENSLQLF-SESPNCTDVSWNTVIV 421

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQ 406
                 N + A +  K +LE Q Q
Sbjct: 422 GYVQAGNGEKALILFKDMLECQVQ 445



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 119/273 (43%), Gaps = 65/273 (23%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + ++Y    ++++C    D   G+ +H  ++K G  +D F    L++ Y K   + DA +
Sbjct: 41  EFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAK 100

Query: 215 LFDQMPTRDLVTWTVMIGA------------------------NKFLL------------ 238
           LFD+MP R+ V++  +I                          N F+             
Sbjct: 101 LFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW 160

Query: 239 ------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                             D  +GTA+ID Y+ CG  + AR++FD +  K+++SW+ M+A 
Sbjct: 161 AKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVAC 220

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-----HTGLVEEGLRLFSSMWDD 335
           Y  +   +++L LF  M      PN  TF S+L AC      + G    G    +S  ++
Sbjct: 221 YVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
             V  +      ++DL  ++G +D+AL++ E M
Sbjct: 281 LFVGVE------LIDLYIKSGDVDDALQVFEEM 307


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/621 (36%), Positives = 331/621 (53%), Gaps = 120/621 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----------------- 119
           ++VH+ +V  G    + VAN LL +YA    L  A  +F+ MK                 
Sbjct: 127 KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNC 186

Query: 120 --------------ERDSVSWSVMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFV 164
                         ERD VSW+ M+ G ++        + F   ++   ++ D ++L   
Sbjct: 187 GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASA 246

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-------KVIDD------ 211
           + AC + + +  G+ IH  ++++  D    V  AL+ MYAK        ++I+       
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDL 306

Query: 212 --------------------ARQLFDQMPTRDLVTWTVMIGA------------------ 233
                               ARQ+F+ +   D+V WT MI                    
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 234 ------NKFLLDVIL------------------------------GTAVIDMYAKCGSID 257
                 N F L  +L                              G A+  MYAK GSI+
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426

Query: 258 SAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
            AR++F+ +RQ ++ +SW++MI A   HG G++A++LF  ML+  + P+ IT+V +L AC
Sbjct: 427 GARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSAC 486

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           +H GLVE+G   F  M +   + P + HY CMVDL GRAG L EA K +E+M +E D   
Sbjct: 487 THGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIA 546

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WG+LL +C+++KNVDLA++AA+ LL  +P N G Y  L+NVY++ G+W D AKIR LM  
Sbjct: 547 WGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKA 606

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R +KK  G +W++++NK H F V D  HPQ +EIY+M+  + ++++  G+ PDT   LHD
Sbjct: 607 RGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHD 666

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++ EVK   L  HSEKLAIAFG+I+TPE T +RIMKNLRVC DCH+ IK +S +  R II
Sbjct: 667 LEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREII 726

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA RFHHF+ G+CSC+DYW
Sbjct: 727 VRDATRFHHFKDGSCSCKDYW 747



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 138/280 (49%), Gaps = 26/280 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  YA    L  AH +F+ +  RDSVSW+ ++ G++++  F +  + F + ++  + 
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
              +TL  V+ +C       +G+ +H  V+K GL     V  +L++MYAK   +  A+ +
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
           FD+M  R+  +W  M                I ++  CG +D A   F+ + +++++SW+
Sbjct: 165 FDRMKLRNTSSWNAM----------------ISLHMNCGRVDLALAQFELLSERDIVSWN 208

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFS---- 330
           +MIA    HG   +AL  F  +L    L P+R +  S L AC++   +  G ++      
Sbjct: 209 SMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVR 268

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           +M+D      +      ++ +  ++G ++ A ++IE   +
Sbjct: 269 TMFDASGAVGN-----ALISMYAKSGGVEIARRIIEQSGI 303



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 121/268 (45%), Gaps = 47/268 (17%)

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++K GL    ++   L+++YAK     DA  LF++MP +   +W  ++            
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSG---------- 50

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                 YAK G ++ A ++FD +  ++ +SW+ +I  Y   G+ + A+ +F  M+  +VL
Sbjct: 51  ------YAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 304 PNRITFVSLLYACSHTG-----------LVEEGLR----LFSSMWDDFAVRPDVK----- 343
           P + T  ++L +C+ TG           +V+ GL     + +S+ + +A   D+K     
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 344 ----------HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
                      +  M+ L    GR+D AL   E +S E+D   W +++  C  H   + A
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLS-ERDIVSWNSMIAGCNQHGFDNEA 223

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANA 421
                S+L+     P  + L S + A A
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACA 251



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 120/271 (44%), Gaps = 31/271 (11%)

Query: 34  GHEQNPMNP---RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT 90
           G+ QN +N     V   M  +     S      +S+  S  ++   +Q+HA  +  G   
Sbjct: 348 GYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEAL 407

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKE-RDSVSWSVMVGGFSKVADFINCFETFREF 149
           +  V N L  +YA   ++  A  +FN +++ RD+VSW+ M+   ++        E F + 
Sbjct: 408 SPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQM 467

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC--AALVDMYAKCK 207
           +  G++ D  T   V+ AC     +  GR   D+ +K+   ID  +   A +VD++ +  
Sbjct: 468 LTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDL-MKNVHKIDPTLSHYACMVDLFGRAG 526

Query: 208 VIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILG------------------TAVID 248
           ++ +A +  + MP   D++ W  ++ + K   +V L                   +A+ +
Sbjct: 527 LLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALAN 586

Query: 249 MYAKCGSIDSAREIFDRMRQKNV-----ISW 274
           +Y+ CG  D A +I   M+ + V     +SW
Sbjct: 587 VYSSCGKWDDAAKIRKLMKARGVKKEQGLSW 617


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 310/541 (57%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++ N ++        + ++  LF G+KERDS+SW++M+ G  +        + FRE  
Sbjct: 203 NVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMR 262

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G  +D +T   V+ AC     +  G+ IH  V+++    + FV +ALVDMY+KC+ I 
Sbjct: 263 LAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIK 322

Query: 211 DARQLFDQMPTRDLVTWTVMI---GANKFLL-----------------DVILGT------ 244
            A  +F +MP +++++WT M+   G N F                   D  LG+      
Sbjct: 323 SAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCA 382

Query: 245 ----------------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                       A+I +Y KCGS +++  +F  M  ++ +SW+A
Sbjct: 383 NLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTA 442

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++A Y   G+  + + LF  ML+  + P+ +TF+ +L ACS  GLVE+GL+ F SM  + 
Sbjct: 443 LLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEH 502

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P V H TC++DLLGRAGRL+EA   I +M    D   W  LL +CR+H ++++ + A
Sbjct: 503 GIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWA 562

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A SL+  +PQNP  YVLLS++YA+ G+W  VA++R  M  +R++K PG++WI+ + K+H 
Sbjct: 563 ADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHV 622

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D + P   +IY  L  L+ K+   GY+PD +  LHDV+E  K+  L  HSEKLAIA
Sbjct: 623 FSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIA 682

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI  P G  IR++KNLRVCGDCH+  K +S IT+R I+VRDA RFH F+ G CSC D+
Sbjct: 683 FGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDF 742

Query: 577 W 577
           W
Sbjct: 743 W 743



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 154/319 (48%), Gaps = 30/319 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N +L +Y+    L+    +FN M  RD VSW++ + G++      +    ++  +
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 151 R-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           +   M L+  T   ++  C   + + +GR I+  +LK G   D FV + LVDMY K  +I
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI 189

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
            DA++ FD+MP R++V    MI            T ++    +CG I+ ++ +F  ++++
Sbjct: 190 YDAKRYFDEMPERNVVMCNTMI------------TGLM----RCGMIEESQRLFCGLKER 233

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           + ISW+ MI     +G  ++ALD+F  M  +    ++ TF S+L AC     + EG ++ 
Sbjct: 234 DSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIH 293

Query: 330 SSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           +     + +R D K      + +VD+  +   +  A  + + M  +K+   W A+L    
Sbjct: 294 A-----YVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMP-QKNVISWTAMLVG-- 345

Query: 386 IHKNVDLAEMAAKSLLERQ 404
            +     +E A K   E Q
Sbjct: 346 -YGQNGFSEEAVKIFFEMQ 363



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 97/206 (47%), Gaps = 18/206 (8%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C + ++    + +H ++LK+    + F+   L+  Y K   +  A  +FD +P  +
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           L +W                  ++ +Y+K G +   ++IF+ M  ++ +SW+  I+ Y  
Sbjct: 71  LFSWNT----------------ILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYAN 114

Query: 284 HGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           +G    A+ ++ +ML    +  NRITF ++L  CS    V+ G R  +     F    DV
Sbjct: 115 YGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLG-RQINGQILKFGFGSDV 173

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESM 368
              + +VD+  + G + +A +  + M
Sbjct: 174 FVGSPLVDMYTKLGLIYDAKRYFDEM 199


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/503 (41%), Positives = 312/503 (62%), Gaps = 16/503 (3%)

Query: 77  RQVHAQ-IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +QVHAQ I+ GG  ++L V N ++ +Y     L  A  +F+ M ERD VSW+ ++  ++K
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D  +    F +     M   +  +    +  R ++ +   + + D+    G++ D+  
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDV----GMETDEVT 277

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
            A ++   A+   +  A  +      RD+   +    +     +V++G+A+IDMY+KCGS
Sbjct: 278 LAGVISACAQLGAVKHANWI------RDIAERSGFGPSG----NVVVGSALIDMYSKCGS 327

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
            D A ++F+ M+++NV S+S+MI  Y  HG+   AL LF  ML + + PN++TF+ +L A
Sbjct: 328 PDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSA 387

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH GLVE+G +LF+ M   F V P   HY CMVDLLGRAG L+EAL L+++M +E + G
Sbjct: 388 CSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG 447

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +WGALLGACRIH N D+A++AA  L + +P   G+Y+LLSN+YA+AGRW++V+K+R ++ 
Sbjct: 448 VWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIR 507

Query: 436 RRRLKKIPGWTWIEVEN-KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
            +  KK PG +W E +N +IH F  GD+THP+S EI + L  L E+L   GY P+     
Sbjct: 508 EKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAP 567

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           +D+ ++ K   L SHSEKLA+A+GL+ T  G  I+IMKN+R+C DCH+ +   S IT R 
Sbjct: 568 YDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGRE 627

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRD  RFHHF  G CSC ++W
Sbjct: 628 IIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 152/324 (46%), Gaps = 22/324 (6%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P  Q  R +     +S L  C    QI+QVHA I+  G      V  KL+ +        
Sbjct: 32  PQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPM 91

Query: 110 DAHAL--FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
            ++ L  F  +   +   W+ M+ G++           +    R G+   S+T   + +A
Sbjct: 92  GSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKA 151

Query: 168 CRDRKDIVMGRLIH-DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           C    ++ +G+ +H   +L  G   D +V  +++D+Y KC  +  AR++FD+M  RD+V+
Sbjct: 152 CGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS 211

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           WT +I A                YAK G ++SA  +FD +  K++++W+AM+  Y  +G+
Sbjct: 212 WTELIVA----------------YAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGR 255

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG--LRLFSSMWDDFAVRPDVKH 344
            K+AL+ F  M    +  + +T   ++ AC+  G V+    +R  +     F    +V  
Sbjct: 256 PKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAER-SGFGPSGNVVV 314

Query: 345 YTCMVDLLGRAGRLDEALKLIESM 368
            + ++D+  + G  DEA K+ E M
Sbjct: 315 GSALIDMYSKCGSPDEAYKVFEVM 338



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F ++   N   W+AMI  Y   G   ++ + +  M    V P   TF +L  AC     
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++ G ++ +          D+     M+DL  + G L  A K+ + MS E+D   W  L+
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELI 216

Query: 382 GACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDV 427
            A   + +++    +A  L +  P ++   +  +   YA  GR ++ 
Sbjct: 217 VAYAKYGDME----SASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEA 259


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/576 (38%), Positives = 334/576 (57%), Gaps = 59/576 (10%)

Query: 61  KFFISSLL-SCRNI--FQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
            F IS+ L SC  +  F++ + VH   +      +L V   LL +Y     + +A   F 
Sbjct: 205 NFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFE 264

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIV 175
            M + D + WS+M+  +++        E F    +  + + +++T   V++AC     + 
Sbjct: 265 EMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLN 324

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG-- 232
           +G  IH  VLK GLD + FV  AL+D+YAKC  I+++ +LF     ++ V W T+++G  
Sbjct: 325 LGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYV 384

Query: 233 ------------ANKFLLDV---------------------------------------I 241
                       +N   LD+                                       +
Sbjct: 385 QLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV 444

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  ++IDMYAKCG ID AR  FD+M +++ +SW+A+I  Y  HG G +AL+LF MM  S 
Sbjct: 445 VANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSN 504

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
             PN++TFV +L ACS+ GL+++G   F SM  D+ + P ++HYTCMV LLGR+G+ DEA
Sbjct: 505 SKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEA 564

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           +KLI  +  +    +W ALLGAC IHKN+DL ++ A+ +LE +PQ+   +VLLSN+YA A
Sbjct: 565 VKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATA 624

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            RW +VA +R  M ++++KK PG +W+E +  +H F+VGD++HP  + I+ ML  L +K 
Sbjct: 625 KRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKT 684

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
             AGY+PD +  L DV+++ K   L+ HSE+LA+AFGLI  P G  IRI+KNLR+C DCH
Sbjct: 685 RDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRICVDCH 744

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + IK VS I +R I++RD NRFHHF  G CSC DYW
Sbjct: 745 AVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 188/407 (46%), Gaps = 72/407 (17%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VHA +   G   +  V   L+  Y++   +  A  +F+G+  +D VSW+ MV  +++   
Sbjct: 126 VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYC 185

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
             +    F +    G + +++T+   +++C   +   +G+ +H   LK   D D +V  A
Sbjct: 186 HEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA 245

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------------A 233
           L+++Y K   I +A+Q F++MP  DL+ W++MI                           
Sbjct: 246 LLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVP 305

Query: 234 NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREIF 263
           N F    +L                                A++D+YAKCG I+++ ++F
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLF 365

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
               +KN ++W+ +I  Y   G G+KAL+LF  ML   + P  +T+ S+L A +    +E
Sbjct: 366 TGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALE 425

Query: 324 EGLRLFS----SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            G ++ S    +M++  +V  +      ++D+  + GR+D+A    + M  ++DE  W A
Sbjct: 426 PGRQIHSLTIKTMYNKDSVVAN-----SLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNA 479

Query: 380 LLGACRIH----KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           L+    IH    + ++L +M  +S    +P N   +V + +  +NAG
Sbjct: 480 LICGYSIHGLGMEALNLFDMMQQS--NSKP-NKLTFVGVLSACSNAG 523



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 160/362 (44%), Gaps = 61/362 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H  I+  G   +L   N LL  Y     L DA  LF+ M   ++VS+  +  GFS+ 
Sbjct: 23  KSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRS 82

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIR--ACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             F           R G +++ +    +++     D  D  +   +H  V K G   D F
Sbjct: 83  HQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLS--VHAYVYKLGHQADAF 140

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
           V  AL+D Y+ C  +D ARQ+FD +  +D+V+WT M+                       
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 234 ---NKFLL------------------------------DVILGTAVIDMYAKCGSIDSAR 260
              N F +                              D+ +G A++++Y K G I  A+
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQ 260

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHT 319
           + F+ M + ++I WS MI+ Y    + K+AL+LF  M  SS V+PN  TF S+L AC+  
Sbjct: 261 QFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASL 320

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            L+  G ++ S +     +  +V     ++D+  + G ++ ++KL    S EK+E  W  
Sbjct: 321 VLLNLGNQIHSCVL-KVGLDSNVFVSNALMDVYAKCGEIENSVKLFTG-STEKNEVAWNT 378

Query: 380 LL 381
           ++
Sbjct: 379 II 380



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 55/267 (20%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           +DS++   +++     +D   G+ +H  +LK G  +D F    L++ Y     ++DA +L
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL------------- 238
           FD+MP  + V++  +                           N+F+              
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 239 -----------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                            D  +GTA+ID Y+ CG++D+AR++FD +  K+++SW+ M+A Y
Sbjct: 121 DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             +   + +L LF  M      PN  T  + L +C+     + G  +          R D
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR-D 239

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESM 368
           +     +++L  ++G + EA +  E M
Sbjct: 240 LYVGIALLELYTKSGEIAEAQQFFEEM 266


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/556 (38%), Positives = 322/556 (57%), Gaps = 56/556 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HA  +     +NL + N L+ +Y+    +  A  +F+ M  +D +SW+ ++  +++ 
Sbjct: 233 KEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQN 292

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  +  R+    GM +D+  +   + AC   + +   + +H   LK GL  D  + 
Sbjct: 293 NCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DLMMQ 351

Query: 197 AALVDMYA---------------KCK----------------VIDDARQLFDQMPTRDLV 225
             ++D+YA               KCK                + ++A  +F  M    + 
Sbjct: 352 NMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVE 411

Query: 226 TWTVMI-----------GANK------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
             ++ +             NK            F+L+     +++DMYA CGS+++A ++
Sbjct: 412 PDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKV 471

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F   R K+++ W+ MI AYG HG+GK A++LF +M   +++P+ ITF++LLYACSH+GL+
Sbjct: 472 FICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLI 531

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EG RL  +M   + + P  +HY C+VDLLGRA  L+EA   ++SM +E    +W A LG
Sbjct: 532 NEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLG 591

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N  L E+AA+ LL+  P +PG YVL+SNV+A +GRW+DV ++R  M    LKK 
Sbjct: 592 ACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKN 651

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEV 501
           PG +WIEV NK+H F V D +HP+S +IY+ L  ++EKLE   GY+P T   LH+V +E 
Sbjct: 652 PGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEE 711

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           KV  LY HSE+LAIA+GL++T EGT IRI KNLRVC DCH+F K VS    R +IVRDA+
Sbjct: 712 KVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDAS 771

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHFE G CSC D+W
Sbjct: 772 RFHHFEDGVCSCGDFW 787



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 58/396 (14%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++HA I+    + ++ VAN L+ ++     ++ A  +F+ + E+D+++W+ M+ GF++  
Sbjct: 133 EIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNG 192

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            +    + F       ++ D  +L  ++ A      ++ G+ IH   +K+ LD +  +  
Sbjct: 193 LYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGN 252

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWT----------------------------- 228
            L+DMY+KC  +  A  +FD+M  +DL++WT                             
Sbjct: 253 TLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDV 312

Query: 229 --VMIGAN----------------------KFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
             +MIG+                       + L D+++   +ID+YA CG+I+ A  +F+
Sbjct: 313 DTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFE 372

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            ++ K+V+SW++MI+ Y ++G   +AL +F +M  + V P+ IT VS+L A +    + +
Sbjct: 373 SIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNK 432

Query: 325 GLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           G  +   ++   F +         +VD+    G L+ A K+    +  K   LW  ++ A
Sbjct: 433 GKEIHGFIFRKGFMLEGST--VNSLVDMYACCGSLENAYKVF-ICTRSKSLVLWTTMINA 489

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             +H     A +   S++E Q   P H   L+ +YA
Sbjct: 490 YGMHGR-GKAAVELFSIMEDQKLIPDHITFLALLYA 524



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 173/405 (42%), Gaps = 69/405 (17%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER-DSVSWSVM 129
            +I +  ++H  I+  G  + + VAN L+ +YA    +  A  LF+ M ER D VSW+ +
Sbjct: 24  EDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSI 83

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           +  +S     +     FRE  + G+  ++YTL   ++AC D     +G  IH  +LKS  
Sbjct: 84  ISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQ 143

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------NKFL----- 237
            +D +V  ALV M+ +   +  A ++FD++  +D +TW  MI         N+ L     
Sbjct: 144 VLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCG 203

Query: 238 ----------------------LDVILGTAVIDMYA--------------------KCGS 255
                                 L  +L    I  YA                    KC  
Sbjct: 204 LQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCC 263

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +  A  +FD+M  K++ISW+ +IAAY  +    +AL L   + +  +  + +   S L A
Sbjct: 264 VAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLA 323

Query: 316 CSHTGLVEEGLRLFSSMWD--DFAVR---PDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           CS       GLR  S   +   + ++    D+     ++D+    G ++ A ++ ES+  
Sbjct: 324 CS-------GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKC 376

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
            KD   W +++ +C +H  +    +    L++     P    L+S
Sbjct: 377 -KDVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPDSITLVS 419



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 164/382 (42%), Gaps = 91/382 (23%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+  DS+T P V++AC   +DI  G  IH +++K G D   FV  +LV MYAKC  I  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 213 RQLFDQMPTR-DLVTWTVMI------------------------GANKF----------- 236
           R+LFD+M  R D+V+W  +I                        GAN +           
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 237 -------------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                              +LDV +  A++ M+ + G +  A  IFD + +K+ I+W++M
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSM 184

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG------------ 325
           IA +  +G   +AL  F  +  + + P+ ++ +S+L A    G +  G            
Sbjct: 185 IAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWL 244

Query: 326 ---LRLFSSMWD---------------DFAVRPDVKHYTCMVDLLGRAGRLDEALKL--- 364
              LR+ +++ D               D  +  D+  +T ++    +     EALKL   
Sbjct: 245 DSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRK 304

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           +++  ++ D  + G+ L AC   + +  A+      L+R   +     ++ +VYA+ G  
Sbjct: 305 VQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNI 364

Query: 425 QDVAKIRDLMTRRRLKKIPGWT 446
               ++ + +   + K +  WT
Sbjct: 365 NYATRMFESI---KCKDVVSWT 383


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/538 (37%), Positives = 302/538 (56%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           ++N  +  YA   AL  A  +F+G+ ++   SW+ ++GG ++  D         +    G
Sbjct: 387 LSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSG 446

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
            Q D +T+  ++ AC   K +  G+ IH  VL++GL+ D FV  +L+  Y  C     AR
Sbjct: 447 QQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSAR 506

Query: 214 QLFDQMPTRDLVTWTVMIG----------------------------------------- 232
            LFD+M  ++LV+W  MI                                          
Sbjct: 507 VLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLS 566

Query: 233 -------ANKFLLDVI------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                  A+ ++L  +      +G ++IDMYAK G I  +R++FD ++ KNV SW+A+I 
Sbjct: 567 ALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIV 626

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           A+G HG GK+A++L+  M     +P+R T++ +L AC H GLVEEGL+ F  M +   + 
Sbjct: 627 AHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIE 686

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HY C++D+L RAGRLD+AL+L+  M  E D  +W +LL +CR    +++ E  AK 
Sbjct: 687 PKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKK 746

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           LLE +P    +YVLLSN+YA  G+W  V ++R +M    L+K  G +WIEV  +++ F V
Sbjct: 747 LLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVV 806

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           GDS  P+S EI  +   L E++   GY P+T+  LH+V EE K+  L  HSEKLAI+FGL
Sbjct: 807 GDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGL 866

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + T +GT +RI KNLR+C DCH+  K +S    R I+VRD  RFHHF  G CSC DYW
Sbjct: 867 LKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 163/355 (45%), Gaps = 67/355 (18%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            + ++  +L+ +YA+  +  D+  +F+ M+ ++ + W+ +V G+++   + +  + F + 
Sbjct: 77  NDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDL 136

Query: 150 IR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
           +     Q D++T P VI+AC    D+ +G +IH +V+K GL +D FV  ALV MY KC  
Sbjct: 137 VSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGA 196

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGA---NKFLLD-------------------------- 239
           +D+A ++FD MP  +LV+W  MI A   N F  D                          
Sbjct: 197 VDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILP 256

Query: 240 --------------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                     V++  A++ MY+KCG ++ A+  F +   KNV+S
Sbjct: 257 VCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVS 316

Query: 274 WSAMIAAYGYHGQGKKALDLFPMM--LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           W+ MI+A+   G   +A +L   M      +  N +T +++L AC    L +  LR    
Sbjct: 317 WNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPAC----LDKLQLRSLKE 372

Query: 332 MWDDFAVRPDVKHY---TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +   ++ R   +H       +    + G L+ A K+   +  +K    W AL+G 
Sbjct: 373 L-HGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIG-DKTVSSWNALIGG 425



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 149/349 (42%), Gaps = 76/349 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA-LVDMYAKCKVIDDARQLFDQ 218
            +  +++AC ++KDI  GR +H  V  S    + +V    L+ MYA C    D+R +FD 
Sbjct: 45  AIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDN 104

Query: 219 MPTRDLVTWTVMIGA---NKFLLDVI---------------------------------- 241
           M T++L+ W  ++     N    DV+                                  
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 242 ------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                             +G A++ MY KCG++D A ++FD M + N++SW++MI A+  
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 284 HGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           +G  + + DL   ML    +LP+ +T V++L  C+  G V+ G+ +   +     +  +V
Sbjct: 225 NGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGI-HGLAVKLGLSEEV 283

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL----WGALLGACRIHKNVDLAEMAAK 398
                MV +  + G L+EA      MS  K+       W  ++ A  +  +V+ A    +
Sbjct: 284 MVNNAMVYMYSKCGYLNEA-----QMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQ 338

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
            +  +  +   + V + NV         +    D +  R LK++ G+++
Sbjct: 339 EMQIQGEEMKANEVTILNV---------LPACLDKLQLRSLKELHGYSF 378



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 119/541 (21%), Positives = 211/541 (39%), Gaps = 113/541 (20%)

Query: 43  RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLL 99
           +V M +  D  F    D   F S + +C  I  +R    +H  ++  G + ++ V N L+
Sbjct: 131 KVFMDLVSDTDFQP--DNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALV 188

Query: 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDS 158
            +Y    A+ +A  +F+ M E + VSW+ M+  FS+     + F+   E +   G+  D 
Sbjct: 189 GMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDV 248

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
            T+  ++  C    ++ +G  IH + +K GL  +  V  A+V MY+KC  +++A+  F +
Sbjct: 249 VTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVK 308

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI---------FDRMRQK 269
              +++V+W  MI A     DV     ++      G    A E+          D+++ +
Sbjct: 309 NNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLR 368

Query: 270 NVISW---------------SAMIAAYG-----------YHGQG---------------- 287
           ++                  +A I AY            +HG G                
Sbjct: 369 SLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQ 428

Query: 288 ----KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE-----EGLRLFSSMWDDFAV 338
               +KAL L   M  S   P+  T  SLL AC+H   ++      G  L + +  DF V
Sbjct: 429 NGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFV 488

Query: 339 RPD-VKHY------------------------TCMVDLLGRAGRLDEALKLIE---SMSV 370
               + HY                          M+    + G   E+L L     S  +
Sbjct: 489 GTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGI 548

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS--NVYANAGRWQDVA 428
           +  E    ++ GAC     + L + A   +L +  Q    +V  S  ++YA +G  ++  
Sbjct: 549 QSHEIAIVSVFGACSQLSALRLGKEAHGYVL-KALQTEDAFVGCSIIDMYAKSGCIKESR 607

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           K+ D +   + K +  W  I V + IH                +  + L E+++  G +P
Sbjct: 608 KVFDGL---KDKNVASWNAIIVAHGIHGHG-------------KEAIELYERMKKVGQMP 651

Query: 489 D 489
           D
Sbjct: 652 D 652



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 41/230 (17%), Positives = 92/230 (40%), Gaps = 27/230 (11%)

Query: 64  ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S   +C  +  +R   + H  ++      +  V   ++ +YA    + ++  +F+G+K+
Sbjct: 556 VSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKD 615

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           ++  SW+ ++             E +    + G   D +T   ++ AC     +  G   
Sbjct: 616 KNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKY 675

Query: 181 HDIVLKSGL---DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKF 236
              +    L    ++ + C  L+DM A+   +DDA +L ++MP   D   W+ ++ + + 
Sbjct: 676 FKEMQNFNLIEPKLEHYAC--LIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRT 733

Query: 237 LLDVILGTAVI------------------DMYAKCGSIDSAREIFDRMRQ 268
              + +G  V                   ++YA  G  D  R +   M++
Sbjct: 734 FGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKE 783


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/604 (36%), Positives = 330/604 (54%), Gaps = 88/604 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG---- 117
           F + S    +   + RQ+HAQ++  G   +      L+ +YA +  L DA  +F+     
Sbjct: 88  FLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQR 147

Query: 118 ---------------------------MKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
                                      + ERD VSW+ M+ G+ +   +    E F+E +
Sbjct: 148 DVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMM 207

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVI 209
           R  ++ D  TL  V+ AC     I +GR IH +V    G      +  A + +Y+KC  +
Sbjct: 208 RTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDV 267

Query: 210 D-------------------------------DARQLFDQM-----PTRDLVTWTVM--- 230
           +                               +A  LF +M        D+   +V+   
Sbjct: 268 EIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327

Query: 231 --IGA-----------NKFLLDVILG----TAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
             +GA           +K L  V  G    T++IDMYAKCG I++A ++F+ M  K++ S
Sbjct: 328 AHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS 387

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI  +  HG+   A DLF  M  + + P+ IT V LL ACSH+GL++ G  +F S+ 
Sbjct: 388 WNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVT 447

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            D+ + P ++HY CM+DLLG AG   EA ++I  M +E D  +W +LL AC++H N++LA
Sbjct: 448 QDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELA 507

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E  A+ L+E +P+N G YVLLSN+YA AGRW+DVA+IR+++  + +KK+PG + IE+++ 
Sbjct: 508 ESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSV 567

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +H+F +GD  HPQS EIYRML  +   LE AG++PDT+  L +++EE K G L  HSEKL
Sbjct: 568 VHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKL 627

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAFGLI+T  GT + ++KNLRVC +CH   K +S I +R I+ RD  RFHHF  G CSC
Sbjct: 628 AIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSC 687

Query: 574 RDYW 577
            DYW
Sbjct: 688 CDYW 691



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 177/356 (49%), Gaps = 28/356 (7%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            HAQ+V  G        +KLL +  +      L  A ++F   +E + + W+ M+ G + 
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            +D ++  E +   +  G   ++YT PF++++C   K    GR IH  V+K G ++D++ 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
             +L+ MYA+   ++DAR++FD    RD+V+ T                A+I  YA  G 
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCT----------------ALITGYASRGD 164

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           + SAR++FD + +++V+SW+AMI  Y  +   ++AL+LF  M+ + V P+  T VS+L A
Sbjct: 165 VRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSA 224

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+ +G +E G  + + + D       +K     + L  + G ++ A  L E +S  KD  
Sbjct: 225 CAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSC-KDVV 283

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA-------GRW 424
            W  L+G    H N+    +     + R  ++P    +LS + A A       GRW
Sbjct: 284 SWNTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 338


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 312/577 (54%), Gaps = 89/577 (15%)

Query: 58  VDPKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           + P F  F   L +C  +   R++H      G   N+ VA  L+++Y+       A +LF
Sbjct: 114 IRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 173

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD  SW+ M+ G  +  +     +   E     M+L+   + FV           
Sbjct: 174 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE-----MRLEGIKMNFVTVVS------- 221

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV---------- 225
                              +    VDMYAK  ++D A ++F+ +P +D++          
Sbjct: 222 -------------------ILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYA 262

Query: 226 --------------------------TWTVMIGA-------------------NKFLLDV 240
                                     TW  ++ A                       LDV
Sbjct: 263 QNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDV 322

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + T +ID+Y KCG +  A  +F ++ Q++ ++W+A+I+ +G HG  +K L LF  ML  
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDE 382

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+ +TFVSLL ACSH+G VEEG   F  M  ++ ++P +KHY CMVDLLGRAG L+ 
Sbjct: 383 GVKPDHVTFVSLLSACSHSGFVEEGKWCFRLM-QEYGIKPSLKHYGCMVDLLGRAGYLEM 441

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A   I+ M ++ D  +WGALLGACRIH N++L + A+  L E   +N G+YVLLSN+YAN
Sbjct: 442 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 501

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
            G+W+ V K+R L   R LKK PGW+ IEV  K+  F  G+ +HP+ +EIY  L  L+ K
Sbjct: 502 VGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAK 561

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GYIPD +F L DV+E+ K   L SHSE+LAIAFG+I+TP  + IRI KNLRVCGDC
Sbjct: 562 MKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDC 621

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+  K +S IT+R I+VRD+NRFHHF+ G CSC DYW
Sbjct: 622 HNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 188/380 (49%), Gaps = 42/380 (11%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA +V  G + ++ ++ +L+ +YA    ++ +   F+ + ++D  +W+ M+  +     
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 139 F---INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           F   I CF  ++  +   ++ D YT P V++AC     +V GR IH    K G   + FV
Sbjct: 98  FHEAIGCF--YQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFV 152

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
            A+L+ MY++      AR LFD MP RD+ +W  MI                        
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
              F+  V +    +DMYAK G +DSA ++F+ +  K+VISW+ +I  Y  +G   +A++
Sbjct: 213 KMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIE 272

Query: 293 LFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
           ++ MM   + ++PN+ T+VS+L A +H G +++G+++   +     +  DV   TC++D+
Sbjct: 273 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKT-NLHLDVFVATCLIDV 331

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
            G+ GRL +A+ L   +  E     W A++    IH + +        +L+ +   P H 
Sbjct: 332 YGKCGRLVDAMSLFYQVPQESSV-TWNAIISCHGIHGHAEKTLKLFGEMLD-EGVKPDHV 389

Query: 412 VLLS-------NVYANAGRW 424
             +S       + +   G+W
Sbjct: 390 TFVSLLSACSHSGFVEEGKW 409



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 68/318 (21%), Positives = 112/318 (35%), Gaps = 87/318 (27%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
             + +H +++ +G     F+   LV++YA    +  +R  FDQ+P +D+  W  MI A  
Sbjct: 34  FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 93

Query: 234 ---------NKFLLDVILGTAVIDMYA------KCGSIDSAREI---------------- 262
                      F   +++     D Y        CG++   R+I                
Sbjct: 94  HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVA 153

Query: 263 -------------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                              FD M  +++ SW+AMI+    +G   +ALD+   M    + 
Sbjct: 154 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 213

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            N +T VS+L                                   VD+  + G LD A K
Sbjct: 214 MNFVTVVSIL--------------------------------PVFVDMYAKLGLLDSAHK 241

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP--QNPGHYVLLSNVYANA 421
           + E + V KD   W  L+     +     A    K + E +    N G +V +   YA+ 
Sbjct: 242 VFEIIPV-KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 300

Query: 422 GRWQDVAKIRDLMTRRRL 439
           G  Q   KI   + +  L
Sbjct: 301 GALQQGMKIHGRVIKTNL 318


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/559 (35%), Positives = 328/559 (58%), Gaps = 56/559 (10%)

Query: 75  QIRQVHA-QIVAGGTLTNLIVANKLLY-IYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +++Q+HA  I  G +L N  +   L++ I +L   ++ A+ +F  +   +  +W+ ++ G
Sbjct: 33  KLKQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAPMSYAYNVFTVIHNPNVFTWNTIIRG 92

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           +++  +    F  +R+ +   ++ D++T PF+++A     ++  G  IH + +++G +  
Sbjct: 93  YAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESL 152

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------- 233
            FV  +L+ +YA C   + A ++F+ M  RDLV W  MI                     
Sbjct: 153 VFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSV 212

Query: 234 -----------------------------NKFLLDVILG------TAVIDMYAKCGSIDS 258
                                        + +LL V L        +++D+YAKCG+I  
Sbjct: 213 EGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIRE 272

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A+ +F  M ++N +SW+++I     +G G++AL+LF  M    ++P+ ITFV +LYACSH
Sbjct: 273 AQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSH 332

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G+++EG   F  M ++  + P ++HY CMVDLL RAG + +A + I++M V+ +  +W 
Sbjct: 333 CGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWR 392

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
            LLGAC IH ++ L E+A   LL  +P++ G YVLLSN+YA+  RW DV  IR  M +  
Sbjct: 393 TLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDG 452

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           +KK PG++ +E+ N++++F++GD +HPQS+++Y +L  ++E L+L GY+P T   L D++
Sbjct: 453 VKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIE 512

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           EE K   L  HSEK+AIAF L+ TP GT IR+MKNLRVC DCH  IK ++ I  R I++R
Sbjct: 513 EEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIR 572

Query: 559 DANRFHHFEGGACSCRDYW 577
           D +RFHHF GG+CSC+DYW
Sbjct: 573 DRSRFHHFRGGSCSCKDYW 591


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 331/572 (57%), Gaps = 61/572 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S+ +  ++I  +++V   ++  G   +  + N++L ++     + DA  LF+ M E++
Sbjct: 137 LVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKN 196

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFV--IRACRDRKDIVMGRL 179
            +SW+ ++GG     D+   FE FR F+       D+ +  FV  IRA      I  GR 
Sbjct: 197 ILSWNTIIGGLVDAGDY---FEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQ 253

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----------------- 222
           +H   LK+G+  D FV  AL+DMY+KC  I+DA+ +FDQMP +                 
Sbjct: 254 LHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGY 313

Query: 223 ------------------DLVTWTVMIGA-------------------NKFLLDVILGTA 245
                             D  T++++I                     + F LD++  TA
Sbjct: 314 SEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTA 373

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++D+Y+K G I+ A+ +FD M  KNVISW+A+IA YG HG+G +A+++F  ML   ++PN
Sbjct: 374 LVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPN 433

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TF+++L ACS++GL + G  +F SM  D  ++P   HY CM++LLGR G LDEA  LI
Sbjct: 434 HVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 493

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           +    +    +W ALL ACR+HKN +L + AA+ L    P+   +YV+L N+Y  +GR +
Sbjct: 494 KDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLE 553

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           + A +   + RR L+ +P  +WIE++ + + F  GD  H QS+EIY+ L  L  ++   G
Sbjct: 554 EAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHG 613

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+P   F L DVDE+ +   LY HSEKLAIAFGLI T + T ++I+++ R+CGDCHS IK
Sbjct: 614 YVPQXKFLLPDVDEQEERVLLY-HSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIK 672

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            ++ +TRR I+VRDA+RFHHF+ G+CSC DYW
Sbjct: 673 LIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 155/353 (43%), Gaps = 83/353 (23%)

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           F +  + +  FE     +     +DS T   ++ AC   K I   + + + ++ SGLD D
Sbjct: 108 FKRYHEALELFEILE--LNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPD 165

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------- 232
           +++   ++ M+ KC ++ DAR+LFD+MP +++++W  +IG                    
Sbjct: 166 EYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQ 225

Query: 233 -----ANKFLLDVILGTA-----------------------------VIDMYAKCGSIDS 258
                 ++  + +I  +A                             +IDMY+KCGSI+ 
Sbjct: 226 XFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIED 285

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-- 316
           A+ +FD+M +K  + W+++IA Y  HG  ++AL ++  M  S V  +  TF  ++  C  
Sbjct: 286 AQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICAR 345

Query: 317 ---------SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
                    +H GLV  G  L            D+   T +VDL  + GR+++A K +  
Sbjct: 346 LASLEHAKQAHAGLVRHGFGL------------DIVANTALVDLYSKWGRIEDA-KHVFD 392

Query: 368 MSVEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           M   K+   W AL+     H + V+  EM  + L E     P H   L+ + A
Sbjct: 393 MMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV--PNHVTFLAVLSA 443


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/567 (37%), Positives = 317/567 (55%), Gaps = 55/567 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I   +S R + +   +   +   G    + + N L+ +Y     L DAH LF+ M +R+
Sbjct: 67  LIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 126

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            +SW+ M+  +SK        E     +R  ++ + YT   V+R+C    D+   R++H 
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHC 183

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDAR----------------------------- 213
            ++K GL+ D FV +AL+D++AK    +DA                              
Sbjct: 184 GIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV 243

Query: 214 --QLFDQMPTRDLV----TWTVMIGAN-----------------KFLLDVILGTAVIDMY 250
             +LF +M     +    T T ++ A                  K+  D+IL  A++DMY
Sbjct: 244 ALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMY 303

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            KCGS++ A  +F++M++++VI+WS MI+    +G  ++AL LF  M SS   PN IT V
Sbjct: 304 CKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIV 363

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +L+ACSH GL+E+G   F SM   + + P  +HY CM+DLLG+AG+LD+A+KL+  M  
Sbjct: 364 GVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC 423

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           E D   W  LLGACR+ +N+ LAE AAK ++   P++ G Y LLSN+YAN+ +W  V +I
Sbjct: 424 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEI 483

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M  R +KK PG +WIEV  +IH F +GD++HPQ  E+ + L  L  +L   GY+P+T
Sbjct: 484 RTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPET 543

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           NF L D++ E    +L  HSEKLA+AFGL+  P    IRI KNLR+CGDCH F K  S +
Sbjct: 544 NFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKL 603

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             R I++RD  R+HHF+ G CSC DYW
Sbjct: 604 EIRSIVIRDPIRYHHFQDGKCSCGDYW 630


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 318/561 (56%), Gaps = 38/561 (6%)

Query: 47  QMGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA 103
           Q+   C F    D   F   L +C  +  +R   QVH  IV  G  TNL + N L+ +Y 
Sbjct: 126 QVMLSCAFNP--DHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYG 183

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL-- 161
               L +A  + + M  RD VSW+ MV G+++   F +  E  +E     +  D+ T+  
Sbjct: 184 KCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS 243

Query: 162 --PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
             P V   C    + V  + IH++  +     +      ++ +Y    + ++A  LF QM
Sbjct: 244 LSPVV---CYTSLENV--QYIHNM-FERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM 297

Query: 220 P----TRDLVTWTVMIGANKFLLDVILG-------------------TAVIDMYAKCGSI 256
                  D VT   ++ A   L  + LG                    A++DMYAKCG +
Sbjct: 298 EECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCL 357

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + AR++FD+MR ++V+SW++M++AYG  GQG  A+ LF  ML S   P+ I FVS+L AC
Sbjct: 358 EEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSAC 417

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SHTGL+++G   F  M + + + P ++H+ CMVDL GRAG ++EA   I+ M +E +E +
Sbjct: 418 SHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERV 477

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL ACR+H  +D+  +AA  L +  P+  G+YVLLSN+YA AG W+DV  +R  M +
Sbjct: 478 WGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKK 537

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             +KK+PG + +E+  ++H F  GD  HPQ++ IY  L  L  K++  GYIP T   LHD
Sbjct: 538 IGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHD 597

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+ E K  +L  HSEKLAI F ++ T +GT IRI KNLRVCGDCH  IK +S I  R II
Sbjct: 598 VEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNII 657

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF  G CSC DYW
Sbjct: 658 VRDCNRFHHFSNGICSCGDYW 678



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 177/366 (48%), Gaps = 27/366 (7%)

Query: 73  IFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           I  + ++H++IV    L  +  +A KL+  Y+     + A  +F+   E++ V ++VM+ 
Sbjct: 51  IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIR 110

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +     ++     F+  + C    D YT P V++AC    ++ +G  +HD ++K GLD 
Sbjct: 111 SYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDT 170

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------------N 234
           + F+  ALV MY KC  + +AR++ DQMP RD+V+W  M+                   +
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 235 KFLLDVILGT----AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
              L+   GT    + +  Y    ++     +F+RM +KN+ISW+ MIA Y  +    +A
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + LF  M    + P+ +T  SLL AC     +  G RL   + +   +RP++     ++D
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI-EKGNLRPNLLLENALLD 349

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA-CRIHKNVDLAEMAAKSLLERQPQNPG 409
           +  + G L+EA  + + M + +D   W +++ A  R  +  D   + AK L     QNP 
Sbjct: 350 MYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAYGRSGQGYDAVALFAKML--DSGQNPD 406

Query: 410 HYVLLS 415
               +S
Sbjct: 407 SIAFVS 412


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/611 (36%), Positives = 327/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +F +   +Q+HA+++      +  VA+ L+ +YA   +  +A  +
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 327

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           FN +++R+SVSW+V++GG  +   F    E F +     M +D + L  +I  C +R D+
Sbjct: 328 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 387

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
            +GR +H + LKSG +    V  +L+ +YAKC  + +A                      
Sbjct: 388 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY 447

Query: 213 ---------RQLFDQMPTRDLVTWTVM--------------------------------- 230
                    R+ FD M TR+ +TW  M                                 
Sbjct: 448 SQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507

Query: 231 ---------IGANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                    IGANK              +L+V +  A I MY+KCG I  A+++FD +  
Sbjct: 508 VTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG 567

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+V+SW+AMI  Y  HG GK+A   F  MLS    P+ I++V++L  CSH+GLV+EG   
Sbjct: 568 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 627

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  M     + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+IH 
Sbjct: 628 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK + E    + G Y+LL+ +Y++AG+  D A++R LM  + +KK PG++W+
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 747

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNL 506
           EVENK+H F   D +HPQ   I   L  L EK+   GY+       E+H           
Sbjct: 748 EVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEIH----------- 796

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFG+++ P    I IMKNLR+CGDCH+ IK +S++T R  ++RD  RFHHF
Sbjct: 797 --HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHF 854

Query: 567 EGGACSCRDYW 577
           + G+CSC DYW
Sbjct: 855 KSGSCSCGDYW 865



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 186/434 (42%), Gaps = 101/434 (23%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  YA    +  A   F  M ERD VSW++M+   S+            E  R G++
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V++S   ID +V +AL+++YAKC    +A+++
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 327

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL-----------DV 240
           F+ +  R+ V+WTV+IG                         ++F L           D+
Sbjct: 328 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 387

Query: 241 ILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
            LG                    ++I +YAKCG + +A  +F  M +++++SW++MI AY
Sbjct: 388 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY 447

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G   KA + F  M +     N IT+ ++L A    G  E+GL+++S+M     V PD
Sbjct: 448 SQIGNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 342 VKHYTCM-----------------------------------VDLLGRAGRLDEALKLIE 366
              Y  +                                   + +  + GR+ EA KL +
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGH--YVLLSNVYANAG 422
            ++  KD   W A++     H    + + AAK+   +  +   P +  YV + +  +++G
Sbjct: 564 LLN-GKDVVSWNAMITGYSQH---GMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619

Query: 423 RWQDVAKIRDLMTR 436
             Q+     D+MTR
Sbjct: 620 LVQEGKLYFDMMTR 633



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 35/302 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I  N ++  YA   +L+DA  LF+ M  RD  SW+ ++ G+ +   F++  ETF    
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 151 RCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           R G  L +++T   V+++C       +   +  +  K     D  V  ALVDM+ +C  +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
           D A +LF Q+    +     M+                  YAK   ID A E F+ M ++
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAG----------------YAKLYGIDHAIEYFEDMAER 233

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +V+SW+ MIAA    G+ ++AL L   M    V  +  T+ S L AC+         RLF
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA---------RLF 284

Query: 330 SSMWDD------FAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           S  W            P +  Y  + +++L  + G   EA ++  S+  +++   W  L+
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLI 343

Query: 382 GA 383
           G 
Sbjct: 344 GG 345



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 36/163 (22%)

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDR-MRQKNVISWSAMIAAYGYHGQGKKALDLF---- 294
           V L   ++  Y  CG++  AR +    +++ NVI+ + M+  Y   G    A +LF    
Sbjct: 39  VFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP 98

Query: 295 ----------------------------PMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
                                        M  S   LPN  TF  ++ +C   G  E   
Sbjct: 99  RRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAP 158

Query: 327 RLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +L    W  DF   PDV+  T +VD+  R G +D A +L   +
Sbjct: 159 QLLGLFWKFDFWGDPDVE--TALVDMFVRCGYVDFASRLFSQI 199


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 333/604 (55%), Gaps = 67/604 (11%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNI-----FQIRQVHAQIVAGGT 88
           G ++  +N  V MQ          + P  F  + + C NI        +Q+H+ ++    
Sbjct: 229 GLDEKAVNLFVEMQ-------NSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNF 281

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + N+ V+N LL  Y+ H ++ DA  LF+ M E+D VS++V++ G++        F+ FRE
Sbjct: 282 VWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRE 341

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
                     +    ++    +  D  MGR IH   + +  D +  V  +LVDMYAKC  
Sbjct: 342 LQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGK 401

Query: 209 IDDARQLFDQMPTR-----------------------------------DLVTWTVMIGA 233
            ++A  +F  +  R                                   D  T+  ++ A
Sbjct: 402 FEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRA 461

Query: 234 NK-------------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
           +                    F+ +V  G+A++D+YAKCGSI  A + F  M  +N++SW
Sbjct: 462 SASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSW 521

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI+AY  +G+ +  L  F  M+ S + P+ ++F+ +L ACSH+GLVEEGL  F+SM  
Sbjct: 522 NAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQ 581

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
            + + P  +HY  +VD+L R+GR +EA KL+  M ++ DE +W ++L ACRIHKN +LA 
Sbjct: 582 IYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELAR 641

Query: 395 MAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
            AA  L   +  ++   YV +SN+YA AG+W++V+K+   M  R +KK+P ++W+E++++
Sbjct: 642 RAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHE 701

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
            H FS  D  HPQ EEI + +  L++ +E  GY PDT+  LH+ DE+ KV +L  HSE+L
Sbjct: 702 THMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERL 761

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAF LI+TPEG+ I +MKNLR C DCH+ IK +S I  R I VRD+ RFHHF  G CSC
Sbjct: 762 AIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSC 821

Query: 574 RDYW 577
            D+W
Sbjct: 822 GDFW 825



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 182/404 (45%), Gaps = 72/404 (17%)

Query: 38  NPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL-TNLIVAN 96
           N ++ R+ ++ G D   +RS    F + + L    + Q RQ+  ++    T+ TN++++ 
Sbjct: 37  NNIDARI-VKTGFDPDTSRS---NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
                Y     L +A  LF+GM ER +V+W++++GG+S++  F   FE F +  RCG + 
Sbjct: 93  -----YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEP 147

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDI---VLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           D  T   ++  C   +   MG  I  +   ++K G D    V   LVD Y K   +D A 
Sbjct: 148 DYVTFVTLLSGCNGHE---MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLAC 204

Query: 214 QLFDQMPTRDLVTWTVMIG-----------------------------------ANKFLL 238
           QLF +MP  D V++  MI                                    AN  L 
Sbjct: 205 QLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLD 264

Query: 239 DVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
           D++LG                    A++D Y+K  S+  AR++FD M +++ +S++ +I+
Sbjct: 265 DIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIIS 324

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y + G+ K A DLF  +  +     +  F ++L   S+T   E G ++ +      A  
Sbjct: 325 GYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTA-D 383

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            ++     +VD+  + G+ +EA ++I +    +    W A++ A
Sbjct: 384 SEILVGNSLVDMYAKCGKFEEA-EMIFTNLTHRSAVPWTAMISA 426



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 31/245 (12%)

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243
           ++K+G D D       V  + K   +  ARQLF++MP ++ V+  +MI            
Sbjct: 43  IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG---------- 92

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                 Y K G++  AR++FD M ++  ++W+ +I  Y    Q K+A +LF  M      
Sbjct: 93  ------YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146

Query: 304 PNRITFVSLLYACS----HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           P+ +TFV+LL  C+       + +   ++    +D   +  +      +VD   ++ RLD
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT-----LVDSYCKSNRLD 201

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNV 417
            A +L + M  E D   + A++     +    L E A    +E Q     P  +   + +
Sbjct: 202 LACQLFKEMP-EIDSVSYNAMITG---YSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257

Query: 418 YANAG 422
            AN G
Sbjct: 258 CANIG 262


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/528 (40%), Positives = 319/528 (60%), Gaps = 24/528 (4%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N++   Q+H  +V  G   NL + N L+ +Y   K L  A  + + M  RD VSW+ MV 
Sbjct: 152 NLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVA 211

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYT----LPFVIRACRDR----KDIVMGRLIHDI 183
           G+++   F +  +  RE     ++ D+ T    LP V     D     KD+ + +L    
Sbjct: 212 GYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFV-KLKEKS 270

Query: 184 VLKSGLDIDQFVCAAL----VDMYAKCKV---IDDARQLFDQMPTRDLVTWTVM------ 230
           ++   + I  +V  A+    VD+Y + +V     DA  +   +P    ++  V+      
Sbjct: 271 LISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHE 330

Query: 231 -IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
            +   K   +++L  A+IDMYAKCG +  AR +FD+M  ++V+SW++MI+AYG  GQGK 
Sbjct: 331 YVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKD 390

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+ LF  M  S   P+ I FVS+L ACSH GLV+EG   F+ M  ++ + P ++HY CMV
Sbjct: 391 AVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLM-AEYGITPGIEHYNCMV 449

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGRAG++DEA  L   M +E +E +WG+LL ACR++ ++++A +AA  L +  P+  G
Sbjct: 450 DLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSG 509

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
           +YVLLSN+YA AGRWQDV  +R +M  + +KKIPG + +E+ + ++ F  GD +H QS+E
Sbjct: 510 YYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKE 569

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY+ L  L  +++  GY+P+T+  LHDV+EE K  +L  HSEKLAI F ++ T  G+ IR
Sbjct: 570 IYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIR 629

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I KN+RVCGDCH   K +S I  R II+RD +RFHHF  G CSC DYW
Sbjct: 630 ITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 172/355 (48%), Gaps = 31/355 (8%)

Query: 58  VDPKFFISSLLSCRNIFQI-------RQVHAQIVAGGTL-TNLIVANKLLYIYALHKALT 109
           + PKF   +   C  I  +       +++H++I+    L  N  +  KL+  YA      
Sbjct: 29  LSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPC 88

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
               +F+ + +++ V ++VM+  +     + +    F+     G   D+YT P V++AC 
Sbjct: 89  YTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACS 148

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
              ++ +G  IH  V+K GLD++ ++   LV MY KCK +D AR++ D+MP RD+V+W  
Sbjct: 149 VSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNS 208

Query: 230 MIGA----NKFLLDVILGTAVIDMYAK-----------------CGSIDSAREIFDRMRQ 268
           M+       +F   + L   + D+  K                 C ++   +++F ++++
Sbjct: 209 MVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKE 268

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K++ISW+ MIA Y  +    +A+DL+  M    V P+ ++  S+L AC        G R+
Sbjct: 269 KSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRI 328

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              + +   +RP++     ++D+  + G L EA  + + M + +D   W +++ A
Sbjct: 329 HEYV-ERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQM-MFRDVVSWTSMISA 381


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 331/572 (57%), Gaps = 61/572 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S+ +  ++I  +++V   ++  G   +  + N++L ++     + DA  LF+ M E++
Sbjct: 137 LVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKN 196

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFV--IRACRDRKDIVMGRL 179
            +SW+ ++GG     D+   FE FR F+       D+ +  FV  IRA      I  GR 
Sbjct: 197 ILSWNTIIGGLVDAGDY---FEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQ 253

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----------------- 222
           +H   LK+G+  D FV  AL+DMY+KC  I+DA+ +FDQMP +                 
Sbjct: 254 LHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGY 313

Query: 223 ------------------DLVTWTVMIGA-------------------NKFLLDVILGTA 245
                             D  T++++I                     + F LD++  TA
Sbjct: 314 SEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTA 373

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++D+Y+K G I+ A+ +FD M  KNVISW+A+IA YG HG+G +A+++F  ML   ++PN
Sbjct: 374 LVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPN 433

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TF+++L ACS++GL + G  +F SM  D  ++P   HY CM++LLGR G LDEA  LI
Sbjct: 434 HVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 493

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           +    +    +W ALL ACR+HKN +L + AA+ L    P+   +YV+L N+Y  +GR +
Sbjct: 494 KDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLE 553

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           + A +   + RR L+ +P  +WIE++ + + F  GD  H QS+EIY+ L  L  ++   G
Sbjct: 554 EAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHG 613

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+P   F L DVDE+ +   LY HSEKLAIAFGLI T + T ++I+++ R+CGDCHS IK
Sbjct: 614 YVPQDKFLLPDVDEQEERVLLY-HSEKLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIK 672

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            ++ +TRR I+VRDA+RFHHF+ G+CSC DYW
Sbjct: 673 LIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 153/353 (43%), Gaps = 83/353 (23%)

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           F +  + +  FE     +     +DS T   ++ AC   K I   + + + ++ SGLD D
Sbjct: 108 FKRYHEALELFEILE--LNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPD 165

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------- 232
           +++   ++ M+ KC ++ DAR+LFD+MP +++++W  +IG                    
Sbjct: 166 EYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQ 225

Query: 233 ------------------------ANKFLLDVILGTAV----------IDMYAKCGSIDS 258
                                   A + L    L T V          IDMY+KCGSI+ 
Sbjct: 226 DFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIED 285

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-- 316
           A+ +FD+M +K  + W+++IA Y  HG  ++AL ++  M  S V  +  TF  ++  C  
Sbjct: 286 AQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICAR 345

Query: 317 ---------SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
                    +H GLV  G  L            D+   T +VDL  + GR+++A K +  
Sbjct: 346 LASLEHAKQAHAGLVRHGFGL------------DIVANTALVDLYSKWGRIEDA-KHVFD 392

Query: 368 MSVEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           M   K+   W AL+     H + V+  EM  + L E     P H   L+ + A
Sbjct: 393 MMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMV--PNHVTFLAVLSA 443


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 305/554 (55%), Gaps = 54/554 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA+ +   + TN  V   LL +YA    L  A  +F+ M    +V W+ ++  +    
Sbjct: 92  QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAG 151

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D        R     GM+ DS+T   V+ AC    D+  G  +     + G+    FV  
Sbjct: 152 DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVAT 211

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           A VD+Y KC  +  AR++FD+M  +D V W  M                           
Sbjct: 212 AAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKP 271

Query: 231 --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                         +GA             ++FL + +LGTA+IDMYAKCGS   A  +F
Sbjct: 272 DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 331

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
            +MR+K++I W+AMI   G  G  K A  L   M  S V  N  TF+ LL +C+HTGL++
Sbjct: 332 QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 391

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G R F +M   + + P ++HY CMVDLL RAG L EA +L++ M +  +  + GALLG 
Sbjct: 392 DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGG 451

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C+IH+N +LAE   K L+  +P N G+YV+LSN+Y+N GRW+D AK+R  M  + ++K+P
Sbjct: 452 CKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVP 511

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
             +W+E E K+H+F VGD +HP S++IY+ L  L  +++  GY P T   + DV++E K 
Sbjct: 512 ACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKE 571

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLAIAF L+ T  G  IR+ KNLRVC DCH+ IK VS IT R IIVRD NRF
Sbjct: 572 HTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRF 631

Query: 564 HHFEGGACSCRDYW 577
           H F  G+CSC DYW
Sbjct: 632 HCFRDGSCSCNDYW 645



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 59/278 (21%)

Query: 160 TLPFVIR-ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           T+P  ++ A R    +  G  +H   LK     +  V  +L+ +YAKC ++  A+++FD+
Sbjct: 72  TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 131

Query: 219 MPTRDLVTWTVMIGA---------------NKF--------------------LLDVILG 243
           MP    V WT +I A               N F                    + D+  G
Sbjct: 132 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 191

Query: 244 -------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                              TA +D+Y KCG +  ARE+FD+MR K+ ++W AM+  Y  +
Sbjct: 192 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 251

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVK 343
           G  ++ALDLF  M +  + P+       L AC+  G ++ G +    + WD+F   P + 
Sbjct: 252 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             T ++D+  + G   EA  + + M  +KD  +W A++
Sbjct: 312 --TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMI 346


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 324/602 (53%), Gaps = 101/602 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH   +  G   ++ V N ++ +YA    + +A+ +F  MK +D VSW+ MV G+S++
Sbjct: 270 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329

Query: 137 ADF-----------------------------------INCFETFREFIRCGMQLDSYTL 161
             F                                       + FR+ + CG + +  TL
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ-------FVCAALVDMYAKCKVIDDAR- 213
             ++  C     ++ G+  H   +K  L++D+        V  AL+DMY+KCK    AR 
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 449

Query: 214 --------------------------------QLFDQM--------PTRDLVTWTVM--- 230
                                           +LF QM        P    ++  +M   
Sbjct: 450 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 509

Query: 231 -IGANKFLLDV--------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
            +GA +F   +               +   +IDMY+K G +D+AR +FD M Q+N +SW+
Sbjct: 510 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 569

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           +++  YG HG+G++AL +F  M    ++P+ +TFV +LYACSH+G+V++G+  F+ M  D
Sbjct: 570 SLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 629

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F V P  +HY CMVDLL RAGRLDEA++LI  M ++    +W ALL ACR++ NV+L E 
Sbjct: 630 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 689

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AA  LLE +  N G Y LLSN+YANA  W+DVA+IR LM    +KK PG +W++      
Sbjct: 690 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 749

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F  GD +HP S++IY +L  L ++++  GY+PD  F LHDVD+E K   L  HSEKLA+
Sbjct: 750 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLAL 809

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+G++ T  G  IRI KNLR CGDCHS   ++S I    IIVRD++RFHHF+ G+CSCR 
Sbjct: 810 AYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRG 869

Query: 576 YW 577
           YW
Sbjct: 870 YW 871



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 27/270 (10%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER-- 121
           L +C  I   R    VHA + A G   N+ V N L+ +Y    A  +A  +F+ M+ER  
Sbjct: 152 LKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV 211

Query: 122 -DSVSWSVMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            D VSW+ +V  + +  D I   + F       G++ D+ +L  V+ AC        G+ 
Sbjct: 212 GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ 271

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           +H   L+SGL  D FV  A+VDMYAKC ++++A ++F++M  +D+V+W  M+        
Sbjct: 272 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTG------ 325

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFP 295
                     Y++ G  D A  +F+++R++    NV++WSA+IA Y   G G +ALD+F 
Sbjct: 326 ----------YSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFR 375

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
            ML     PN +T VSLL  C+  G +  G
Sbjct: 376 QMLLCGSEPNVVTLVSLLSGCASAGTLLHG 405



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 111/250 (44%), Gaps = 58/250 (23%)

Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
           +  + +R   R G + D YT PFV++AC +      G  +H +V  SG + + FV   LV
Sbjct: 128 DVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLV 187

Query: 201 DMYAKCKVIDDARQLFDQMPTR---DLVTWTVMIGANK---------------------- 235
            MY +C   ++ARQ+FD+M  R   DLV+W  ++ A                        
Sbjct: 188 SMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIR 247

Query: 236 ----FLLDVILGTAVIDMYAK-----------------------------CGSIDSAREI 262
                L++V+   A +  +++                             CG ++ A ++
Sbjct: 248 PDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKV 307

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+RM+ K+V+SW+AM+  Y   G+   AL LF  +   ++  N +T+ +++   +  GL 
Sbjct: 308 FERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLG 367

Query: 323 EEGLRLFSSM 332
            E L +F  M
Sbjct: 368 FEALDVFRQM 377



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 24/209 (11%)

Query: 54  FTRSVDPKFFI--------SSLLSCRNIFQIR---QVHAQIVAGGTLTN-LIVANKLLYI 101
           F++ + P  F+         +L++C  +  +R   Q+HA ++     +  L VAN L+ +
Sbjct: 484 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 543

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           Y+    +  A  +F+ M +R+ VSW+ ++ G+          + F E  +  +  D  T 
Sbjct: 544 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTF 603

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC------AALVDMYAKCKVIDDARQL 215
             V+ AC        G +   I   +G++ D  V       A +VD+ ++   +D+A +L
Sbjct: 604 VVVLYACSHS-----GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 658

Query: 216 FDQMPTRDL-VTWTVMIGANKFLLDVILG 243
              MP +     W  ++ A +   +V LG
Sbjct: 659 IRGMPMKPTPAVWVALLSACRVYANVELG 687


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 322/575 (56%), Gaps = 58/575 (10%)

Query: 60  PKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           P+ + S + +C   +N+   R +HA +       +  + N L+++Y    A++DA  +F+
Sbjct: 60  PRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFD 119

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M  RD VSW+ ++ G+++            + +R   + + +T   +++A        +
Sbjct: 120 KMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSI 179

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----- 231
           G  +H + +K   D D +V +AL+DMYA+C+ +D A  +FD++ +++ V+W  +I     
Sbjct: 180 GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 239

Query: 232 -------------------GANKFL------------------------------LDVIL 242
                              GA  F                               L   +
Sbjct: 240 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFV 299

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G  ++ MYAK GS+  AR++FDRM ++++++W+ M+ A   +G GK+A+  F  +    +
Sbjct: 300 GNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGI 359

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             N+ITF+S+L ACSH GLV+EG   F  M  D+ V+P++ HY   VDLLGRAG L EAL
Sbjct: 360 QLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEAL 418

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             +  M +E    +WGALLGACR+HKN  + + AA  + E  P + G  VLL N+YA+ G
Sbjct: 419 IFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTG 478

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W D A++R +M    +KK P  +W+++EN +H F   D THP+S +IYRM   ++ +++
Sbjct: 479 KWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIK 538

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
            AGY+P+T   L  ++E+ +   L  HSEK+A+AF LI  P G  IRIMKN+R+CGDCHS
Sbjct: 539 KAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHS 598

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K+VS + +R I+VRD NRFHHF  G+CSC DYW
Sbjct: 599 AFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 325/600 (54%), Gaps = 85/600 (14%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + +L   +++ +  ++H      G  ++  V   L+ +YA    + +A  +F+ M  RD
Sbjct: 128 LLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRD 187

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            V+WS+M+ G+ +   F +    F E     ++ D   L  V+ AC    ++  G++IHD
Sbjct: 188 VVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHD 247

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVID-------------------------------D 211
            ++++ + +D  + +ALV MYA C  +D                               +
Sbjct: 248 FIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIEN 307

Query: 212 ARQLFDQMPTRDLVTWTVMIGA-----------NKF--------------LLDVI----- 241
           AR +F+QM  +DLV W+ MI             N F              +L VI     
Sbjct: 308 ARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAH 367

Query: 242 ------------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                   +  A+I+MYAKCGS++ AR IFD+M +KNVISW+ M
Sbjct: 368 LGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCM 427

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I+A+  HG    AL  F  M    + PN ITFV +LYACSH GLVEEG ++F SM ++  
Sbjct: 428 ISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHN 487

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           + P   HY CMVDL GRA  L EAL+L+E+M +  +  +WG+L+ ACR+H  ++L E AA
Sbjct: 488 ITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAA 547

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           K LLE  P + G +V LSN+YA A RW+DV ++R LM  + + K  G +  E+ N+IH+F
Sbjct: 548 KRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEF 607

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
            V D +H  ++EIY  L  +  KL+L GY P+T   L D++EE K   +  HSEKLA+ +
Sbjct: 608 LVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCY 667

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GL+    G+ IRI+KNLRVC DCH+FIK  S +  R I+VRD  RFHH++ G CSC+DYW
Sbjct: 668 GLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 102/424 (24%)

Query: 63  FISSLLSCRNIFQIRQVHAQIV------AGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
             S+L S  ++  ++QVHAQI+      +   L  L++++      AL  +L  A ++FN
Sbjct: 26  LFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISS-----CALSSSLDYALSVFN 80

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            + + ++   +  +   S+  +       +      G+ +D ++ P +++A    K +V 
Sbjct: 81  LIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE 140

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G  IH +  K G D D FV   LV MYA C  I +AR +FD+M  RD+VTW++MI     
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200

Query: 234 -----------------------------------------NKFLLDVI----------L 242
                                                     K + D I          L
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHL 260

Query: 243 GTAVIDMYAKCGSID-------------------------------SAREIFDRMRQKNV 271
            +A++ MYA CGS+D                               +AR +F++M +K++
Sbjct: 261 QSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDL 320

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG--LRLF 329
           + WSAMI+ Y      ++AL+LF  M S  + P+++T +S++ AC+H G +++   + LF
Sbjct: 321 VCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLF 380

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
               D       +     ++++  + G L+ A ++ + M   K+   W  ++ A  +H +
Sbjct: 381 V---DKNGFGGALPINNALIEMYAKCGSLERARRIFDKMP-RKNVISWTCMISAFAMHGD 436

Query: 390 VDLA 393
              A
Sbjct: 437 AGSA 440


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/503 (41%), Positives = 312/503 (62%), Gaps = 16/503 (3%)

Query: 77  RQVHAQ-IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +QVHAQ I+ GG  ++L V N ++ +Y     L  A  +F+ M ERD VSW+ ++  ++K
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D  +    F +     M   +  +    +  R ++ +   + + D+    G++ D+  
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDV----GMETDEVT 277

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
            A ++   A+   +  A  +      RD+   +    +     +V++G+A+IDMY+KCGS
Sbjct: 278 LAGVISACAQLGAVKHANWI------RDIAERSGFGPSG----NVVVGSALIDMYSKCGS 327

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
            D A ++F+ M+++NV S+S+MI  Y  HG+   AL LF  ML + + PN++TF+ +L A
Sbjct: 328 PDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSA 387

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH GLVE+G +LF+ M   F V P   HY CMVDLLGRAG L+EAL L+++M +E + G
Sbjct: 388 CSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG 447

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +WGALLGACRIH N D+A++AA  L + +P   G+Y+LLSN+YA+AGRW++V+K+R ++ 
Sbjct: 448 VWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIR 507

Query: 436 RRRLKKIPGWTWIEVEN-KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
            +  KK PG +W E +N +IH F  GD+THP+S EI + L  L E+L   GY P+     
Sbjct: 508 EKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAP 567

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           +D+ ++ K   L SHSEKLA+A+GL+ T  G  I+IMKN+R+C DCH+ +   S IT R 
Sbjct: 568 YDLTDDEKERILMSHSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGRE 627

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRD  RFHHF  G CSC ++W
Sbjct: 628 IIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 152/324 (46%), Gaps = 22/324 (6%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P  Q  R +     +S L  C    QI+QVHA I+  G      V  KL+ +        
Sbjct: 32  PQLQHQRKLLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPM 91

Query: 110 DAHAL--FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
            ++ L  F  +   +   W+ M+ G++           +    R G+   S+T   + +A
Sbjct: 92  GSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKA 151

Query: 168 CRDRKDIVMGRLIH-DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           C    ++ +G+ +H   +L  G   D +V  +++D+Y KC  +  AR++FD+M  RD+V+
Sbjct: 152 CGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVS 211

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           WT +I A                YAK G ++SA  +FD +  K++++W+AM+  Y  +G+
Sbjct: 212 WTELIVA----------------YAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGR 255

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG--LRLFSSMWDDFAVRPDVKH 344
            K+AL+ F  M    +  + +T   ++ AC+  G V+    +R  +     F    +V  
Sbjct: 256 PKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAER-SGFGPSGNVVV 314

Query: 345 YTCMVDLLGRAGRLDEALKLIESM 368
            + ++D+  + G  DEA K+ E M
Sbjct: 315 GSALIDMYSKCGSPDEAYKVFEVM 338



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F ++   N   W+AMI  Y   G   ++ + +  M    V P   TF +L  AC     
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++ G ++ +          D+     M+DL  + G L  A K+ + MS E+D   W  L+
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTELI 216

Query: 382 GACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDV 427
            A   + +++    +A  L +  P ++   +  +   YA  GR ++ 
Sbjct: 217 VAYAKYGDME----SASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEA 259


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/561 (39%), Positives = 318/561 (56%), Gaps = 38/561 (6%)

Query: 47  QMGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA 103
           Q+   C F    D   F   L +C  +  +R   QVH  IV  G  TNL + N L+ +Y 
Sbjct: 126 QVMLSCAFNP--DHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYG 183

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL-- 161
               L +A  + + M  RD VSW+ MV G+++   F +  E  +E     +  D+ T+  
Sbjct: 184 KCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMAS 243

Query: 162 --PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
             P V   C    + V  + IH++  +     +      ++ +Y    + ++A  LF QM
Sbjct: 244 LSPVV---CYTSLENV--QYIHNM-FERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQM 297

Query: 220 P----TRDLVTWTVMIGANKFLLDVILG-------------------TAVIDMYAKCGSI 256
                  D VT   ++ A   L  + LG                    A++DMYAKCG +
Sbjct: 298 EECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCL 357

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + AR++FD+MR ++V+SW++M++AYG  GQG  A+ LF  ML S   P+ I FVS+L AC
Sbjct: 358 EEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSAC 417

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SHTGL+++G   F  M + + + P ++H+ CMVDL GRAG ++EA   I+ M +E +E +
Sbjct: 418 SHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERV 477

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL ACR+H  +D+  +AA  L +  P+  G+YVLLSN+YA AG W+DV  +R  M +
Sbjct: 478 WGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKK 537

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             +KK+PG + +E+  ++H F  GD  HPQ++ IY  L  L  K++  GYIP T   LHD
Sbjct: 538 IGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHD 597

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+ E K  +L  HSEKLAI F ++ T +GT IRI KNLRVCGDCH  IK +S I  R II
Sbjct: 598 VEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNII 657

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF  G CSC DYW
Sbjct: 658 VRDCNRFHHFSNGICSCGDYW 678



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 177/366 (48%), Gaps = 27/366 (7%)

Query: 73  IFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           I  + ++H++IV    L  +  +A KL+  Y+     + A  +F+   E++ V ++VM+ 
Sbjct: 51  IKTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIR 110

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +     ++     F+  + C    D YT P V++AC    ++ +G  +HD ++K GLD 
Sbjct: 111 SYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDT 170

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------------N 234
           + F+  ALV MY KC  + +AR++ DQMP RD+V+W  M+                   +
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 235 KFLLDVILGT----AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
              L+   GT    + +  Y    ++     +F+RM +KN+ISW+ MIA Y  +    +A
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEA 290

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + LF  M    + P+ +T  SLL AC     +  G RL   + +   ++P++     ++D
Sbjct: 291 VSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYI-EKGNLQPNLLLENALLD 349

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA-CRIHKNVDLAEMAAKSLLERQPQNPG 409
           +  + G L+EA  + + M + +D   W +++ A  R  +  D   + AK L     QNP 
Sbjct: 350 MYAKCGCLEEARDVFDKMRL-RDVVSWTSMMSAYGRSGQGYDAVALFAKML--DSGQNPD 406

Query: 410 HYVLLS 415
               +S
Sbjct: 407 SIAFVS 412


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/571 (37%), Positives = 326/571 (57%), Gaps = 71/571 (12%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYA-LHKA--------------LTDAHALFNGMKERD 122
            +HA  V  G  ++L +AN L+  YA  H A              +     +F+ M  RD
Sbjct: 131 SLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRD 190

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            VSW+ ++ GF++   ++   +  RE  + G ++ DS+TL  ++    +  D+  G+ IH
Sbjct: 191 VVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIH 250

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL----------------- 224
              +++G D D F+ ++L+DMYAKC  ++ + + F  +P +D                  
Sbjct: 251 GYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFD 310

Query: 225 ------------------VTWTVMIGANKFLLDVILG-------------------TAVI 247
                             V+++ +I A   L  + LG                   ++++
Sbjct: 311 RGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLV 370

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG+I  AR +FDR+ ++++++W+A+I     HG    A+ LF  ML   V P  +
Sbjct: 371 DMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYV 430

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            F+++L ACSH GLV+EG R F+SM  DF + P ++HY  + DLLGRAGRL+EA   I +
Sbjct: 431 AFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISN 490

Query: 368 M-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           M  V+    +W  LL ACR HK+V+LAE     LL    +N G YVL+SN+Y+ A RW+D
Sbjct: 491 MRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKD 550

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
            A++R  M ++ LKK P  +WIEV N++H F  GD +HP  ++I + L  L E++E  GY
Sbjct: 551 AARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGY 610

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           + DTN  LHDVDEE+K   L++HSE+LAIA+G+I+T  GT IR++KN+RVC DCH+ IK 
Sbjct: 611 VIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKF 670

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++ I  R I VRD +RFHHF+ G+CSC DYW
Sbjct: 671 ITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/405 (22%), Positives = 169/405 (41%), Gaps = 86/405 (21%)

Query: 75  QIRQVHAQIV-AGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           Q +Q+HA IV   GTL   N++V +    +  L  +L   H   +       ++WS ++ 
Sbjct: 27  QAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLLQHSL---HLFNSLPSPPPPLAWSSIIK 83

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            ++  +     F +F       +  + +  P +++A    K   +   +H   ++ GLD 
Sbjct: 84  CYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDS 143

Query: 192 DQFVCAALVDMYAK----CKV-----------IDDARQLFDQMPTRDLVTWTVMIGA--- 233
           D ++  AL++ YAK     KV           ID  +++FD MP RD+V+W  +I     
Sbjct: 144 DLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQ 203

Query: 234 ----------------------NKFLLDVIL----------------------------- 242
                                 + F L  IL                             
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVF 263

Query: 243 -GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            G+++IDMYAKC  ++ +   F  + +K+ ISW+++IA    +G+  + L  F  ML   
Sbjct: 264 IGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKEN 323

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSM----WDDFAVRPDVKHYTCMVDLLGRAGR 357
           V P  ++F S++ AC+H   +  G +L   +    +DD          + +VD+  + G 
Sbjct: 324 VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIA-----SSLVDMYAKCGN 378

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +  A  + + +  ++D   W A++  C +H +   A    +++LE
Sbjct: 379 IKMARYVFDRID-KRDMVAWTAIIMGCAMHGHALDAVSLFENMLE 422


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 323/606 (53%), Gaps = 68/606 (11%)

Query: 33  HGHEQNPMNPRVPMQMGPDCQFTRSVDPKFF-ISSLLSC---RNIFQI-RQVHAQIVAGG 87
           HGH+   +   + M+       +  + P  F +SS+L        F + RQ+H  +V   
Sbjct: 284 HGHDHRALELLLQMK-------SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAV 336

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
              +  VA  L+ +YA H  L DA  +F+ M  RD + W+ ++ G S           F 
Sbjct: 337 ADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFH 396

Query: 148 EFIRCGMQLD--SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
              + G+ LD    TL  V+++    + I   R +H +  K GL  D  V   L+D Y K
Sbjct: 397 RMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWK 456

Query: 206 CKVID-------------------------------DARQLFDQMPTRDLVTWTVMIGA- 233
           C  +D                               DA +LF QM  + L   + ++ + 
Sbjct: 457 CGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL 516

Query: 234 ----------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                                  +F  DV  G A++  YAKCGSI+ A   F  + ++ +
Sbjct: 517 LNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGI 576

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           +SWSAMI     HG GK+ALDLF  ML   V PN IT  S+L AC+H GLV++  + F S
Sbjct: 577 VSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFES 636

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M + F +    +HY CM+D+LGRAG+L++A++L+ +M  + +  +WGALLGA R+H++ +
Sbjct: 637 MKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPE 696

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           L  MAA+ L   +P+  G +VLL+N YA+AG W ++AK+R LM    +KK P  +W+E++
Sbjct: 697 LGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIK 756

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           +K+H F VGD +HP + +IY  L  L + +  AGY+P+   +LHDVD   K   L  HSE
Sbjct: 757 DKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSE 816

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           +LA+AF LI+TP G  IR+ KNLR+C DCH   K++S I  R II+RD NRFHHF  G C
Sbjct: 817 RLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTC 876

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 877 SCGDYW 882



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 166/376 (44%), Gaps = 69/376 (18%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           + R++F    +H+ ++  G L     +N LL +Y+  +  + A A+F+ + +   VSWS 
Sbjct: 16  TSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSS 73

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +V  +S      +    FR     G+  + + LP V++      D+  G  +H + + + 
Sbjct: 74  LVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA---PDVRFGAQVHALAVATR 130

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQM----PTRDLVTWTVMIGA----------- 233
           L  D FV  ALV +Y    ++D+AR++FD+       R+ V+W  MI A           
Sbjct: 131 LVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAI 190

Query: 234 -------------NKFLL------------------------------DVILGTAVIDMY 250
                        N+F                                DV    A++DMY
Sbjct: 191 GVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMY 250

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           +K G I+ A  +F++M   +V+SW+A I+    HG   +AL+L   M SS ++PN  T  
Sbjct: 251 SKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLS 310

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESM 368
           S+L AC+  G    G ++   M    A   D   +    +VD+  + G LD+A K+ + M
Sbjct: 311 SVLKACAGAGAFNLGRQIHGFMVKAVA---DFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 369 SVEKDEGLWGALLGAC 384
              +D  LW AL+  C
Sbjct: 368 P-RRDLILWNALISGC 382



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 180/420 (42%), Gaps = 93/420 (22%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM----KERDSVSWSVMVGGF 133
           QVHA  VA   + ++ VAN L+ +Y     + +A  +F+       ER++VSW+ M+  +
Sbjct: 121 QVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAY 180

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            K     +    FRE +  G + + +    V+ AC   +D+  GR +H  V+++G + D 
Sbjct: 181 VKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDV 240

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------------- 231
           F   ALVDMY+K   I+ A  +F++MP  D+V+W   I                      
Sbjct: 241 FTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSS 300

Query: 232 -----------------GANKFLL---------------DVILGTAVIDMYAKCGSIDSA 259
                            GA  F L               D  +   ++DMYAK G +D A
Sbjct: 301 GLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDA 360

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNRITFVSLLY--- 314
           R++FD M ++++I W+A+I+   + G+  + L LF  M      +  NR T  S+L    
Sbjct: 361 RKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTA 420

Query: 315 ---ACSHT----GLVEE-GL--------RLFSSMWD----DFAVR-------PDVKHYTC 347
              A  HT     L E+ GL         L  S W     D+A++        D+   T 
Sbjct: 421 SSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTT 480

Query: 348 MVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           M+  L +    ++A+KL   M    +E D  +  +LL AC      +  +     L++RQ
Sbjct: 481 MMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ 540


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/640 (35%), Positives = 343/640 (53%), Gaps = 92/640 (14%)

Query: 30  LEPHGHEQNPMNP-RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGT 88
           L  H    +P++   + ++M        S    F + S    +   + RQ+HAQ++  G 
Sbjct: 36  LRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGC 95

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNG------------------------------- 117
             +  V   L+ +YA +  L DA  +F+                                
Sbjct: 96  GLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDE 155

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           + ERD VSW+ M+ G+ +   +    E F+E +R  ++ D  TL  V+ AC     I +G
Sbjct: 156 ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELG 215

Query: 178 RLIHDIVLKS----GLDIDQFVCAALVDMYAKCKVID----------------------- 210
           R +H  V       G      +  AL+D+Y+KC  ++                       
Sbjct: 216 RQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGG 275

Query: 211 --------DARQLFDQM-----PTRDLVTWTVM-----IGA-----------NKFLLDVI 241
                   +A  LF +M        D+   +V+     +GA           +K L  V 
Sbjct: 276 YTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVT 335

Query: 242 ----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
               L T++IDMYAKCG I++A ++F+ M  +++ SW+AMI  +  HG+   A DLF  M
Sbjct: 336 NETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRM 395

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
             +RV P+ ITFV LL ACSH+GL++ G ++F SM  D+ + P ++HY CM+DLLG +G 
Sbjct: 396 RGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGL 455

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
             EA ++I +M +E D  +W +LL AC+ H N++LAE  A+ L++ +P+N G YVLLSN+
Sbjct: 456 FKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNI 515

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           YA AGRW+DVA++R ++  + +KK+PG + IEV++ +H+F +GD  HP+  EIY ML  +
Sbjct: 516 YATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEM 575

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
             +LE AG+ PDT+  L +++EE K G L  HSEKLAIAFGLI+T  GT + I+KNLRVC
Sbjct: 576 DVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVC 635

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +CH   K +S I +R I+ RD  RFHHF  G CSC DYW
Sbjct: 636 RNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 169/328 (51%), Gaps = 28/328 (8%)

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            L  A ++F  ++E + + W+ M+ G +  +D ++  E +   +  G   +SY+ PF+++
Sbjct: 13  GLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLK 72

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           +C   K    GR IH  VLK G  +D++V  +L+ MYA+   ++DAR++FD    RD+V+
Sbjct: 73  SCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                            TA+I  YA  G   SAR++FD + +++V+SW+AMI  Y  +G+
Sbjct: 133 C----------------TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGR 176

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS---SMWDDFAVRPDVK 343
            ++AL+LF  M+ + V P+  T VS++ AC+ +G +E G ++ S      DD      +K
Sbjct: 177 YEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLK 236

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
               ++DL  + G ++ A  L E +S  KD   W  L+G    H N+    +     + R
Sbjct: 237 IVNALIDLYSKCGDVETAFGLFEGLSC-KDVVSWNTLIGG-YTHTNLYKEALLLFQEMLR 294

Query: 404 QPQNPGHYVLLSNVYANA-------GRW 424
             + P    LLS + A A       GRW
Sbjct: 295 SGECPNDVTLLSVLPACAHLGAIDIGRW 322


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/575 (37%), Positives = 323/575 (56%), Gaps = 64/575 (11%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S +  C N+ ++R   Q+H  +V  G L +  +   L+  Y+   A+ DA  LF  + 
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357

Query: 120 -ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
              + VSW+ M+ GF +        + F E  R G++ + +T   ++ A      ++   
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVISPS 413

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
            +H  V+K+  +    V  AL+D Y K   +++A ++F  +  +D+V W+ M+       
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 234 -------------------NKFLLDVILG------------------------------- 243
                              N+F    IL                                
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           +A++ MYAK G+I+SA E+F R R+K+++SW++MI+ Y  HGQ  KALD+F  M   +V 
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            + +TF+ +  AC+H GLVEEG + F  M  D  + P  +H +CMVDL  RAG+L++A+K
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           +IE+M       +W  +L ACR+HK  +L  +AA+ ++  +P++   YVLLSN+YA +G 
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 713

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           WQ+ AK+R LM  R +KK PG++WIEV+NK + F  GD +HP  ++IY  L  LS +L+ 
Sbjct: 714 WQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKD 773

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            GY PDT++ L D+D+E K   L  HSE+LAIAFGLIATP+G+ + I+KNLRVCGDCH  
Sbjct: 774 LGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLV 833

Query: 544 IKHVSAITRRVIIVRDANRFHHFEG-GACSCRDYW 577
           IK ++ I  R I+VRD+NRFHHF   G CSC D+W
Sbjct: 834 IKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 178/417 (42%), Gaps = 65/417 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVH  +V  G    + V+N L+ +Y     +  A  LF+  + +  V+W+ M+ G++   
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
             +     F       ++L   +   VI+ C + K++     +H  V+K G   DQ +  
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334

Query: 198 ALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA----------------------- 233
           AL+  Y+KC  + DA +LF ++    ++V+WT MI                         
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394

Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
            N+F   VIL                          GTA++D Y K G ++ A ++F  +
Sbjct: 395 PNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
             K++++WSAM+A Y   G+ + A+ +F  +    + PN  TF S+L  C+ T       
Sbjct: 455 DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 514

Query: 327 RLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           + F      FA++  +    C    ++ +  + G ++ A ++ +    EKD   W +++ 
Sbjct: 515 KQFHG----FAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMIS 569

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA---NAGRWQDVAKIRDLMTR 436
               H     A    K + +R+ +  G  V    V+A   +AG  ++  K  D+M R
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRKVKMDG--VTFIGVFAACTHAGLVEEGEKYFDIMVR 624



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 169/396 (42%), Gaps = 68/396 (17%)

Query: 43  RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102
           R+ M+M  DC    SV     +S+ L C  +F  RQ+H Q +  G L ++ V   L+  Y
Sbjct: 86  RLGMEM--DCSIFSSV---LKVSATL-CDELFG-RQLHCQCIKFGFLDDVSVGTSLVDTY 138

Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
                  D   +F+ MKER+ V+W+ ++ G+++ +        F      G Q +S+T  
Sbjct: 139 MKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
             +    +      G  +H +V+K+GLD    V  +L+++Y KC  +  AR LFD+   +
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258

Query: 223 DLVTWTVMI---GANKFLLDVI-------------------------------------- 241
            +VTW  MI    AN   L+ +                                      
Sbjct: 259 SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLH 318

Query: 242 -------------LGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQG 287
                        + TA++  Y+KC ++  A  +F  +    NV+SW+AMI+ +  +   
Sbjct: 319 CSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGK 378

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           ++A+DLF  M    V PN  T+  +L A       E   ++  + ++  +        T 
Sbjct: 379 EEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG-----TA 433

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           ++D   + G+++EA K+   +  +KD   W A+L  
Sbjct: 434 LLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAG 468



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 54/265 (20%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L +AH LF+    RD  S+  ++ GFS+          F    R GM++D      V++ 
Sbjct: 43  LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
                D + GR +H   +K G   D  V  +LVD Y K     D R++FD+M  R++VTW
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 228 TVMIGA------------------------NKFLLDVILG-------------------- 243
           T +I                          N F     LG                    
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222

Query: 244 ----------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                      ++I++Y KCG++  AR +FD+   K+V++W++MI+ Y  +G   +AL +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282

Query: 294 FPMMLSSRVLPNRITFVSLLYACSH 318
           F  M  + V  +  +F S++  C++
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCAN 307



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 25/236 (10%)

Query: 61  KFFISSLLSC-----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +F  SS+L+       ++ Q +Q H   +     ++L V++ LL +YA    +  A  +F
Sbjct: 494 EFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVF 553

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
              +E+D VSW+ M+ G+++    +   + F+E  +  +++D  T   V  AC     + 
Sbjct: 554 KRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVE 613

Query: 176 MGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGA 233
            G    DI+++   +   +   + +VD+Y++   ++ A ++ + MP     T W  ++ A
Sbjct: 614 EGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA 673

Query: 234 NKFLLDVILG------------------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
            +      LG                    + +MYA+ G      ++   M ++NV
Sbjct: 674 CRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 729


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 309/541 (57%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++ N L+        + D+  LF  M+E+DS+SW+ M+ GF++        + FRE  
Sbjct: 207 NVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMR 266

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              +++D YT   V+ AC     +  G+ +H  ++++    + FV +ALVDMY KCK I 
Sbjct: 267 LENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIK 326

Query: 211 DARQLFDQMPTRDLVTWTVM------------------------IGANKFLLDVILGT-- 244
            A  +F +M  +++V+WT M                        I  + F L  ++ +  
Sbjct: 327 SAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCA 386

Query: 245 ----------------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                       A++ +Y KCGSI+ +  +F  M   + +SW+A
Sbjct: 387 NLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTA 446

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +++ Y   G+  + L LF  ML+    P+++TF+ +L ACS  GLV++G ++F SM  + 
Sbjct: 447 LVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEH 506

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  RAGRL+EA K I  M    D   W +LL +CR H+N+++ + A
Sbjct: 507 RIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWA 566

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A+SLL+ +P N   Y+LLS++YA  G+W++VA +R  M  + L+K PG +WI+ +N++H 
Sbjct: 567 AESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHI 626

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D ++P S++IY  L  L+ K+   GY+PD N  LHDVD+  K+  L  HSEKLAIA
Sbjct: 627 FSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLAIA 686

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI  P G  IR++KNLRVCGDCH+  K++S IT+R I+VRDA RFH F+ G CSC D+
Sbjct: 687 FGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCGDF 746

Query: 577 W 577
           W
Sbjct: 747 W 747



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 142/296 (47%), Gaps = 27/296 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL  Y+    L +   +F+ M  RD VSW+ ++  ++     +   + +   +
Sbjct: 74  NLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLML 133

Query: 151 RCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G   L+   L  ++     +  + +G  +H  V+K G     FV + LVDMY+K  ++
Sbjct: 134 YNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLV 193

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
             ARQ FD+MP +++V +  +I                    +C  I+ +R++F  M++K
Sbjct: 194 FCARQAFDEMPEKNVVMYNTLIAG----------------LMRCSRIEDSRQLFYDMQEK 237

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           + ISW+AMIA +  +G  ++A+DLF  M    +  ++ TF S+L AC     ++EG ++ 
Sbjct: 238 DSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVH 297

Query: 330 SSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +     + +R D +      + +VD+  +   +  A  +   M+  K+   W A+L
Sbjct: 298 A-----YIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNC-KNVVSWTAML 347



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 29/223 (13%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ CRD K I      H  ++K+  + + F+   LV  YAK   I  AR++FDQMP R+
Sbjct: 21  LLKHCRDTKKI------HCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRN 74

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           L +W  ++ +                Y+K   +     +F  M  ++++SW+++I+AY  
Sbjct: 75  LYSWNTLLSS----------------YSKLACLPEMERVFHAMPTRDMVSWNSLISAYAG 118

Query: 284 HG---QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
            G   Q  KA +L  M+ +     NRI   ++L   S  G V  GL++   +   F  + 
Sbjct: 119 RGFLLQSVKAYNL--MLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVV-KFGFQS 175

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            V   + +VD+  + G +  A +  + M  EK+  ++  L+  
Sbjct: 176 YVFVGSPLVDMYSKTGLVFCARQAFDEMP-EKNVVMYNTLIAG 217


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/486 (41%), Positives = 285/486 (58%), Gaps = 51/486 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CG 153
           N LL  Y     +  A A+F  M  R+ VSW+ M+ G+S+          F E ++   G
Sbjct: 241 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 300

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           ++ +  T+  V+ AC     +  GR IH++  + GL+ +  V  AL              
Sbjct: 301 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA------------ 348

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR--QKNV 271
                                              MYAKCGS+  AR  FD++   +KN+
Sbjct: 349 -----------------------------------MYAKCGSLVDARNCFDKLNRNEKNL 373

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           I+W+ MI AY  +G G +A+  F  M+ + + P+ ITF  LL  CSH+GLV+ GL+ F+ 
Sbjct: 374 IAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNH 433

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   +++ P V+HY C+ DLLGRAGRL EA KL+  M +     +WG+LL ACR H+N++
Sbjct: 434 MSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLE 493

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           +AE AA+ L   +P+N G+YVLLSN+YA AGRWQ+V K+R ++  +  KK PG +WIE+ 
Sbjct: 494 MAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEIN 553

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            K H F  GD++HPQ +EIY  L  L EK++ AGY PDT++ LHD+ EE K  NL +HSE
Sbjct: 554 GKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSE 613

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLA+AFG++ TP  T +R+ KNLR+CGDCH+ +  +S I  R +IVRD NRFHHF+GG C
Sbjct: 614 KLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCC 673

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 674 SCGDYW 679



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 182/404 (45%), Gaps = 56/404 (13%)

Query: 67  LLSCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
            L+  N+ ++  QVHA ++  G     +V +K++  YA    +  + ++FNG+ E  S+ 
Sbjct: 79  FLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLL 138

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           ++ M+  +++         T+      G   D +T PFV+++  +   + MG+ +H ++L
Sbjct: 139 FNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLIL 198

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
           + GL  D +V  +L+ +Y KC  I+DA ++FD M  RD+ +W  ++              
Sbjct: 199 RIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAG------------ 246

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVL 303
               Y K G ID+A  IF+RM  +N++SW+ MI+ Y   G  ++AL LF  M+   S V 
Sbjct: 247 ----YTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVR 302

Query: 304 PNRITFVSLLYACSHTGLVEEGLRL------------------FSSMWDDFAVRPDVKH- 344
           PN +T +S+L AC+    +E G ++                   ++M+       D ++ 
Sbjct: 303 PNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNC 362

Query: 345 -------------YTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHK 388
                        +  M+      G   +A+     M    ++ D+  +  LL  C    
Sbjct: 363 FDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSG 422

Query: 389 NVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRWQDVAKI 430
            VD+       +      NP   HY  ++++   AGR  + +K+
Sbjct: 423 LVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKL 466



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGGFS 134
           RQ+H      G  +N  V   L  +YA   +L DA   F+ +   E++ ++W+ M+  ++
Sbjct: 325 RQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYA 384

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--I 191
                +    TFRE I+ G+Q D  T   ++  C     + +G +  + +     ++  +
Sbjct: 385 SYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRV 444

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           + + C A  D+  +   + +A +L  +MP
Sbjct: 445 EHYACVA--DLLGRAGRLAEASKLVGEMP 471


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/490 (40%), Positives = 294/490 (60%), Gaps = 53/490 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  YA    +++A  LF+ M +RD VSW+ M+ G+S+     + +E  R F+
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSG---HSYEALRLFV 393

Query: 151 ---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
              R G +L+  +    +  C D   + +G+ +H  ++K G +   FV            
Sbjct: 394 LMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFV------------ 441

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267
                                              G A++ MY KCGSI+ A ++F  M 
Sbjct: 442 -----------------------------------GNALLLMYCKCGSIEEANDLFKEMA 466

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
            K+++SW+ MIA Y  HG G++AL  F  M    + P+  T V++L ACSHTGLV++G +
Sbjct: 467 GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 526

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            F +M  D+ VRP+ +HY CMVDLLGRAG L+EA  L+++M  E D  +WG LLGA R+H
Sbjct: 527 YFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVH 586

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
            N +LAE AA  +   +P+N G YVLLSN+YA++GRW DV K+R  M  + +KK+PG++W
Sbjct: 587 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 646

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           IE++NK H FSVGD  HP+ +EI+  L  L  +++ AGY+  T+  LHDV+EE K   + 
Sbjct: 647 IEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVR 706

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSE+LA+A+G++    G  IR++KNLRVC DCH+ IK+++ +T R+II+RD NRFHHF+
Sbjct: 707 YHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFK 766

Query: 568 GGACSCRDYW 577
            G+CSC DYW
Sbjct: 767 DGSCSCGDYW 776



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 158/387 (40%), Gaps = 68/387 (17%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N +  N LL  Y  +  L +A  LF   +    VSW+ ++GGF K    +      R+F 
Sbjct: 182 NDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEA----RQFF 237

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
                 D  +   +I       +I   R + D   +S +  D F   A+V  Y + ++++
Sbjct: 238 DSMKVRDVVSWNTIITGYAQNGEIDEARQLFD---ESPVH-DVFTWTAMVSGYIQNRMVE 293

Query: 211 DARQLFDQMPTRDLVTWTVMIGA---------NKFLLDVI------LGTAVIDMYAKCGS 255
           +AR+LFD+MP R+ V+W  M+            K L DV+          +I  YA+CG 
Sbjct: 294 EARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGK 353

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I  A+ +FD+M +++ +SW+AMIA Y   G   +AL LF +M       NR +F S L  
Sbjct: 354 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALST 413

Query: 316 CSHT-----------------------------------GLVEEGLRLFSSMWDDFAVRP 340
           C+                                     G +EE   LF  M        
Sbjct: 414 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM-----AGK 468

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACRIHKNVDLAEMAA 397
           D+  +  M+    R G  +EAL+  ESM  E    D+    A+L AC     VD      
Sbjct: 469 DIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 528

Query: 398 KSLLERQPQNPG--HYVLLSNVYANAG 422
            ++ +     P   HY  + ++   AG
Sbjct: 529 HTMTQDYGVRPNSQHYACMVDLLGRAG 555



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 129/283 (45%), Gaps = 53/283 (18%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------GANKFLL------DVIL 242
           A++  Y +    + AR LFD+MP RDLV+W VMI         G  + L       DV  
Sbjct: 95  AMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCS 154

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP------- 295
              ++  YA+ G +D AR +FDRM +KN +SW+A+++AY  + + ++A  LF        
Sbjct: 155 WNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL 214

Query: 296 --------------------MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
                                   S  + + +++ +++   +  G ++E  +LF    D+
Sbjct: 215 VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF----DE 270

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
             V  DV  +T MV    +   ++EA +L + M  E++E  W A+L      + V++   
Sbjct: 271 SPVH-DVFTWTAMVSGYIQNRMVEEARELFDRMP-ERNEVSWNAMLAGYVQGERVEM--- 325

Query: 396 AAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            AK L +  P +N   +  +   YA  G+  +   + D M +R
Sbjct: 326 -AKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKR 367



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 23/232 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S+L +C ++  +   +Q+H ++V GG  T   V N LL +Y    ++ +A+ LF  M 
Sbjct: 407 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 466

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR- 178
            +D VSW+ M+ G+S+          F    R G++ D  T+  V+ AC     +  GR 
Sbjct: 467 GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 526

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFL 237
             H +    G+  +    A +VD+  +  ++++A  L   MP   D   W  ++GA++  
Sbjct: 527 YFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVH 586

Query: 238 LDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKNV 271
            +  L     D                  +YA  G      ++  RMR K V
Sbjct: 587 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 638


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 327/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +F +   +Q+HA+++      +  VA+ L+ +YA   +  +A  +
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 327

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           FN +++R+SVSW+V++GG  +   F    E F +     M +D + L  +I  C +R D+
Sbjct: 328 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 387

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
            +GR +H + LKSG +    V  +L+ +YAKC  + +A                      
Sbjct: 388 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY 447

Query: 213 ---------RQLFDQMPTRDLVTWTVM--------------------------------- 230
                    R+ FD M TR+ +TW  M                                 
Sbjct: 448 SQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 507

Query: 231 ---------IGANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                    IGANK              +L+V +  A I MY+KCG I  A+++FD +  
Sbjct: 508 VTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG 567

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+V+SW+AMI  Y  HG GK+A   F  MLS    P+ I++V++L  CSH+GLV+EG   
Sbjct: 568 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 627

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  M     + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+IH 
Sbjct: 628 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 687

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK + E    + G Y+LL+ +Y++AG+  D A++R LM  + +KK PG++W+
Sbjct: 688 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 747

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNL 506
           EVENK+H F   D +HPQ   I   +  L EK+   GY+       E+H           
Sbjct: 748 EVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIH----------- 796

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFG+++ P    I IMKNLR+CGDCH+ IK +S++T R  ++RD  RFHHF
Sbjct: 797 --HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHF 854

Query: 567 EGGACSCRDYW 577
           + G+CSC DYW
Sbjct: 855 KSGSCSCGDYW 865



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 186/434 (42%), Gaps = 101/434 (23%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  YA    +  A   F  M ERD VSW++M+   S+            E  R G++
Sbjct: 208 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 267

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V++S   ID +V +AL+++YAKC    +A+++
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 327

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL-----------DV 240
           F+ +  R+ V+WTV+IG                         ++F L           D+
Sbjct: 328 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 387

Query: 241 ILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
            LG                    ++I +YAKCG + +A  +F  M +++++SW++MI AY
Sbjct: 388 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY 447

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G   KA + F  M +     N IT+ ++L A    G  E+GL+++S+M     V PD
Sbjct: 448 SQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 503

Query: 342 VKHYTCM-----------------------------------VDLLGRAGRLDEALKLIE 366
              Y  +                                   + +  + GR+ EA KL +
Sbjct: 504 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 563

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGH--YVLLSNVYANAG 422
            ++  KD   W A++     H    + + AAK+   +  +   P +  YV + +  +++G
Sbjct: 564 LLN-GKDVVSWNAMITGYSQH---GMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619

Query: 423 RWQDVAKIRDLMTR 436
             Q+     D+MTR
Sbjct: 620 LVQEGKLYFDMMTR 633



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 137/302 (45%), Gaps = 35/302 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I  N ++  YA   +L+DA  LF+ M  RD  SW+ ++ G+ +   F++  ETF    
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 151 RCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           R G  L +++T   V+++C       +   +  +  K     D  V  ALVDM+ +C  +
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYV 189

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
           D A +LF Q+    +     M+                  YAK   ID A E F+ M ++
Sbjct: 190 DFASRLFSQIERPTIFCRNSMLAG----------------YAKLYGIDHAIEYFEDMAER 233

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +V+SW+ MIAA    G+ ++AL L   M    V  +  T+ S L AC+         RLF
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA---------RLF 284

Query: 330 SSMWDD------FAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           S  W            P +  Y  + +++L  + G   EA ++  S+  +++   W  L+
Sbjct: 285 SLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLI 343

Query: 382 GA 383
           G 
Sbjct: 344 GG 345



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 36/163 (22%)

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDR-MRQKNVISWSAMIAAYGYHGQGKKALDLF---- 294
           V L   ++  Y  CG++  AR +    +++ NVI+ + M+  Y   G    A +LF    
Sbjct: 39  VFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMP 98

Query: 295 ----------------------------PMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
                                        M  S   LPN  TF  ++ +C   G  E   
Sbjct: 99  RRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAP 158

Query: 327 RLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +L    W  DF   PDV+  T +VD+  R G +D A +L   +
Sbjct: 159 QLLGLFWKFDFWGDPDVE--TALVDMFVRCGYVDFASRLFSQI 199


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/486 (41%), Positives = 285/486 (58%), Gaps = 51/486 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CG 153
           N LL  Y     +  A A+F  M  R+ VSW+ M+ G+S+          F E ++   G
Sbjct: 204 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 263

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           ++ +  T+  V+ AC     +  GR IH++  + GL+ +  V  AL              
Sbjct: 264 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTA------------ 311

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR--QKNV 271
                                              MYAKCGS+  AR  FD++   +KN+
Sbjct: 312 -----------------------------------MYAKCGSLVDARNCFDKLNRNEKNL 336

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           I+W+ MI AY  +G G +A+  F  M+ + + P+ ITF  LL  CSH+GLV+ GL+ F+ 
Sbjct: 337 IAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNH 396

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   +++ P V+HY C+ DLLGRAGRL EA KL+  M +     +WG+LL ACR H+N++
Sbjct: 397 MSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLE 456

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           +AE AA+ L   +P+N G+YVLLSN+YA AGRWQ+V K+R ++  +  KK PG +WIE+ 
Sbjct: 457 MAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEIN 516

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            K H F  GD++HPQ +EIY  L  L EK++ AGY PDT++ LHD+ EE K  NL +HSE
Sbjct: 517 GKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSE 576

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLA+AFG++ TP  T +R+ KNLR+CGDCH+ +  +S I  R +IVRD NRFHHF+GG C
Sbjct: 577 KLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCC 636

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 637 SCGDYW 642



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 56/265 (21%)

Query: 67  LLSCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
            L+  N+ ++  QVHA ++  G     +V +K++  YA    +  + ++FNG+       
Sbjct: 79  FLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIG------ 132

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
                                          D +T PFV+++  +   + MG+ +H ++L
Sbjct: 133 -------------------------------DYFTFPFVLKSSVELLSVWMGKCVHGLIL 161

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
           + GL  D +V  +L+ +Y KC  I+DA ++FD M  RD+ +W  ++              
Sbjct: 162 RIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAG------------ 209

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVL 303
               Y K G ID+A  IF+RM  +N++SW+ MI+ Y   G  ++AL LF  M+   S V 
Sbjct: 210 ----YTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVR 265

Query: 304 PNRITFVSLLYACSHTGLVEEGLRL 328
           PN +T +S+L AC+    +E G ++
Sbjct: 266 PNWVTIMSVLPACAQLSTLERGRQI 290



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 7/149 (4%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGGFS 134
           RQ+H      G  +N  V   L  +YA   +L DA   F+ +   E++ ++W+ M+  ++
Sbjct: 288 RQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYA 347

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--I 191
                +    TFRE I+ G+Q D  T   ++  C     + +G +  + +     ++  +
Sbjct: 348 SYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRV 407

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           + + C A  D+  +   + +A +L  +MP
Sbjct: 408 EHYACVA--DLLGRAGRLAEASKLVGEMP 434


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/464 (42%), Positives = 280/464 (60%), Gaps = 47/464 (10%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+ M +RDS+SWS M+ G+S+          F E  R   +L+  +    +  C +   
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           + +GR +H  ++K+G     +V                                      
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYV-------------------------------------- 217

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                    G A++ MY KCGSID AR+ F  + +K+V+SW+ MI  Y  HG G++AL +
Sbjct: 218 ---------GNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTV 268

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F +M ++ + P+  T VS+L ACSH GLV++G   F SM  D+ +   + HYTCMVDLLG
Sbjct: 269 FELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLG 328

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           RAG+L+EA  L+++M  E D   WGALLGA RIH N +L E AA+ + E +P N G Y+L
Sbjct: 329 RAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYIL 388

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           LS +YA +GRW D  K+R  M  + +KK+PG++W+EV+NKIH F VGD++HP +++IY  
Sbjct: 389 LSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTF 448

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           L  +  KL+  GYI  TN   HDV+EE KV  L  HSEKLA+A+G++  P G  IR++KN
Sbjct: 449 LEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKN 508

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LRVC DCH+ IK++S I  R+II+RD +RFH+FEGG+CSCRD+W
Sbjct: 509 LRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 20/136 (14%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           ++  Y +    D AR LFD+MP RDL +W VM+                  Y +   + +
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTG----------------YVRNRDLKT 44

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR +F+RM +++++SW+AM++ Y  +G   +A ++F  M     L N I++  LL A   
Sbjct: 45  ARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKM----PLKNGISWNGLLAAYVQ 100

Query: 319 TGLVEEGLRLFSSMWD 334
            G +E+  RLF S  D
Sbjct: 101 NGRIEDAKRLFESKMD 116



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 15/231 (6%)

Query: 21  SSSTTAAIALEPHGHEQNPMNPRVP---MQMGPDCQFTRSVDPKFFISSLLSCRNIFQI- 76
           S S +A IA    G+ QN  +       ++M  DC+    ++   F  +L +C NI  + 
Sbjct: 145 SISWSAMIA----GYSQNGCSEEALHFFVEMQRDCE---RLNRSSFTCALSTCSNIAALE 197

Query: 77  --RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
             RQ+H ++V  G  T   V N LL +Y    ++ +A   F  + E+D VSW+ M+ G++
Sbjct: 198 LGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYA 257

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQ 193
           +          F      G++ D  T+  V+ AC     +  G    + +    G+    
Sbjct: 258 RHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKL 317

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILG 243
                +VD+  +   +++A+ L   MP   D  TW  ++GA++   +  LG
Sbjct: 318 VHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 368



 Score = 44.7 bits (104), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 13/124 (10%)

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I  Y +    D AR++FD+M ++++ SW+ M+  Y  +   K A  LF  M      P 
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERM------PE 54

Query: 306 R--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           R  +++ ++L   +  G V+E   +F  M     ++  +  +  ++    + GR+++A +
Sbjct: 55  RDIVSWNAMLSGYAQNGFVDEAREIFYKM----PLKNGIS-WNGLLAAYVQNGRIEDAKR 109

Query: 364 LIES 367
           L ES
Sbjct: 110 LFES 113


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 327/611 (53%), Gaps = 104/611 (17%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   + SSL +C  +F +   +Q+HA+++      +  VA+ L+ +YA   +  +A  +
Sbjct: 258 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 317

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           FN +++R+SVSW+V++GG  +   F    E F +     M +D + L  +I  C +R D+
Sbjct: 318 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 377

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---------------------- 212
            +GR +H + LKSG +    V  +L+ +YAKC  + +A                      
Sbjct: 378 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY 437

Query: 213 ---------RQLFDQMPTRDLVTWTVM--------------------------------- 230
                    R+ FD M TR+ +TW  M                                 
Sbjct: 438 SQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTY 497

Query: 231 ---------IGANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                    IGANK              +L+V +  A I MY+KCG I  A+++FD +  
Sbjct: 498 VTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG 557

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+V+SW+AMI  Y  HG GK+A   F  MLS    P+ I++V++L  CSH+GLV+EG   
Sbjct: 558 KDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLY 617

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F  M     + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+IH 
Sbjct: 618 FDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHG 677

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE+AAK + E    + G Y+LL+ +Y++AG+  D A++R LM  + +KK PG++W+
Sbjct: 678 NDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWM 737

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNL 506
           EVENK+H F   D +HPQ   I   +  L EK+   GY+       E+H           
Sbjct: 738 EVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIH----------- 786

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLA+AFG+++ P    I IMKNLR+CGDCH+ IK +S++T R  ++RD  RFHHF
Sbjct: 787 --HSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHF 844

Query: 567 EGGACSCRDYW 577
           + G+CSC DYW
Sbjct: 845 KSGSCSCGDYW 855



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 186/434 (42%), Gaps = 101/434 (23%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  YA    +  A   F  M ERD VSW++M+   S+            E  R G++
Sbjct: 198 NSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVR 257

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS T    + AC     +  G+ +H  V++S   ID +V +AL+++YAKC    +A+++
Sbjct: 258 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRV 317

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLL-----------DV 240
           F+ +  R+ V+WTV+IG                         ++F L           D+
Sbjct: 318 FNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDL 377

Query: 241 ILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
            LG                    ++I +YAKCG + +A  +F  M +++++SW++MI AY
Sbjct: 378 CLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY 437

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G   KA + F  M +     N IT+ ++L A    G  E+GL+++S+M     V PD
Sbjct: 438 SQIGNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD 493

Query: 342 VKHYTCM-----------------------------------VDLLGRAGRLDEALKLIE 366
              Y  +                                   + +  + GR+ EA KL +
Sbjct: 494 WVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFD 553

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGH--YVLLSNVYANAG 422
            ++  KD   W A++     H    + + AAK+   +  +   P +  YV + +  +++G
Sbjct: 554 LLN-GKDVVSWNAMITGYSQH---GMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 609

Query: 423 RWQDVAKIRDLMTR 436
             Q+     D+MTR
Sbjct: 610 LVQEGKLYFDMMTR 623



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 59/301 (19%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I  N ++  YA   +L+DA  LF+ M  RD  SW+ ++   S+ A           ++
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAG---------SWM 136

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
            CG              CR+    ++G     +  K     D  V  ALVDM+ +C  +D
Sbjct: 137 SCGAL-----------GCRELAPQLLG-----LFWKFDFWGDPDVETALVDMFVRCGYVD 180

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            A +LF Q+    +     M+                  YAK   ID A E F+ M +++
Sbjct: 181 FASRLFSQIERPTIFCRNSMLAG----------------YAKLYGIDHAIEYFEDMAERD 224

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIAA    G+ ++AL L   M    V  +  T+ S L AC+         RLFS
Sbjct: 225 VVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACA---------RLFS 275

Query: 331 SMWDD------FAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
             W            P +  Y  + +++L  + G   EA ++  S+  +++   W  L+G
Sbjct: 276 LGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIG 334

Query: 383 A 383
            
Sbjct: 335 G 335



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 127/320 (39%), Gaps = 59/320 (18%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF-DQ 218
            L   +R+C  R  +   R +H  ++  GL    F+   L+  Y  C  + DAR+L    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           +   +++T  +M+                  YAK GS+  A E+FDRM +++V SW+ ++
Sbjct: 82  IKEPNVITHNIMMNG----------------YAKQGSLSDAEELFDRMPRRDVASWNTLM 125

Query: 279 A----------AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +          + G  G  + A  L  +        +     +L+      G V+   RL
Sbjct: 126 SDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRL 185

Query: 329 FSSM---------------------------WDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           FS +                           ++D A R DV  +  M+  L ++GR+ EA
Sbjct: 186 FSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER-DVVSWNMMIAALSQSGRVREA 244

Query: 362 LKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNV 417
           L L+  M    V  D   + + L AC    ++   +     ++   PQ +P     L  +
Sbjct: 245 LGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIEL 304

Query: 418 YANAGRWQDVAKIRDLMTRR 437
           YA  G +++  ++ + +  R
Sbjct: 305 YAKCGSFKEAKRVFNSLQDR 324


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/575 (37%), Positives = 320/575 (55%), Gaps = 56/575 (9%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   +   L +C     +R   +   Q V  G   ++ V   +L +YA    + +A  +F
Sbjct: 104 DSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVF 163

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD V W+ M+ G ++        + +R+  +  ++ D   +  +I+AC       
Sbjct: 164 DKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSK 223

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           MG  IH  +++  + +D  V  +LVDMYAK   ++ A  +F +M  +++++W+ +I    
Sbjct: 224 MGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFA 283

Query: 234 -NKFL--------------------------------------------------LDVIL 242
            N F                                                    D + 
Sbjct: 284 QNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVS 343

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            TAVIDMY+KCGS+  AR +FD++  ++ ISW+A+IA+YG HG G++AL LF  M  + V
Sbjct: 344 STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNV 403

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  TF SLL A SH+GLVE+G   FS M +++ ++P  KHY CMVDLL RAGR++EA 
Sbjct: 404 KPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQ 463

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           +LIESM  E    +W ALL  C  H    + EMAAK +LE  P +PG Y L+SN +A A 
Sbjct: 464 ELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATAR 523

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW +VA++R +M +  +KK+PG++ +EV  K+H F + D +H Q EEI ++L  L  +++
Sbjct: 524 RWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMK 583

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY+P T F LH+++EEVK   L +HSE+LAIAFGL+ T  GT + I KNLRVCGDCH 
Sbjct: 584 AMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHE 643

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K +S I  R I+VRD  RFHHF+ G CSC DYW
Sbjct: 644 ATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 186/426 (43%), Gaps = 70/426 (16%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           V  K   + L++ ++   I ++HA ++  G   +     KL+  YA    +  A  +F+ 
Sbjct: 5   VGSKSLKTLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDK 64

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
             +    +W+ M+  +S+          +      G++ DS T   V++AC    D+  G
Sbjct: 65  SPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSG 124

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
                  +  G   D FV AA++++YAKC  +D+A ++FD+M  RDLV WT MI      
Sbjct: 125 EETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQN 184

Query: 232 -----------------------------------GANKFLLDV-------------ILG 243
                                              G +K  L +             I+ 
Sbjct: 185 GQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQ 244

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           T+++DMYAK G ++ A  +F RM  KNVISWSA+I+ +  +G    AL L   M S    
Sbjct: 245 TSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYK 304

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP---DVKHYTCMVDLLGRAGRLDE 360
           P+ ++ VS+L ACS  G ++ G  +       + VR    D    T ++D+  + G L  
Sbjct: 305 PDSVSLVSVLLACSQVGFLKLGKSVHG-----YIVRRLHFDCVSSTAVIDMYSKCGSLSF 359

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGH--YVLLSN 416
           A  + + +S  +D   W A++ +  IH +    E A    L+ +  N  P H  +  L +
Sbjct: 360 ARTVFDQISF-RDSISWNAIIASYGIHGS---GEEALSLFLQMRETNVKPDHATFASLLS 415

Query: 417 VYANAG 422
            ++++G
Sbjct: 416 AFSHSG 421


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/550 (38%), Positives = 329/550 (59%), Gaps = 56/550 (10%)

Query: 83  IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142
           +V G  + +  VA+ L+ +YA    + DAH +F  + E+D V ++ ++ G+++       
Sbjct: 128 VVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEA 187

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
            + F + +  G++ + YTL  ++  C +  D+V G+LIH +V+KSGL+       +L+ M
Sbjct: 188 LKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTM 247

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------IGANKFLL 238
           Y++C +I+D+ ++F+Q+   + VTWT                          I  N F L
Sbjct: 248 YSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTL 307

Query: 239 DVIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQ 268
             IL                              G A+I++Y KCG++D AR +FD + +
Sbjct: 308 SSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTE 367

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
            +V++ ++MI AY  +G G +AL+LF  + +  ++PN +TF+S+L AC++ GLVEEG ++
Sbjct: 368 LDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQI 427

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F+S+ ++  +   + H+TCM+DLLGR+ RL+EA  LIE +    D  LW  LL +C+IH 
Sbjct: 428 FASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHG 486

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
            V++AE     +LE  P + G ++LL+N+YA+AG+W  V +++  +   +LKK P  +W+
Sbjct: 487 EVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWV 546

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
           +V+ ++H F  GD +HP+S EI+ ML  L +K++  GY P+T F L D+DEE K+ +LY 
Sbjct: 547 DVDREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYY 606

Query: 509 HSEKLAIAFGLIAT-PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
           HSEKLAIA+ L  T    T IRI KNLRVCGDCHS+IK VS +T R II RD+ RFHHF+
Sbjct: 607 HSEKLAIAYALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFK 666

Query: 568 GGACSCRDYW 577
           GG CSC+DYW
Sbjct: 667 GGLCSCKDYW 676



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 163/366 (44%), Gaps = 61/366 (16%)

Query: 63  FISSLLS----CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           F SSL++     +++  +R VH  ++  G  +   + +KL+  Y    +L +A  LF+ +
Sbjct: 3   FYSSLIAQSAHTKSLTTLRAVHTNVIKSG-FSYSFLGHKLIDGYIKCGSLAEARKLFDEL 61

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             R  V+W+ M+             E +   +  G+  D+YT   + +A      I  G+
Sbjct: 62  PSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQ 121

Query: 179 LIHDIVLKSGLDI-DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
             H + +  GL++ D FV +ALVDMYAK   + DA  +F ++  +D+V +T +I      
Sbjct: 122 RAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQH 181

Query: 232 ------------------GANKFLLDVIL------------------------------G 243
                               N++ L  IL                               
Sbjct: 182 GLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQ 241

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           T+++ MY++C  I+ + ++F+++   N ++W++ +     +G+ + A+ +F  M+   + 
Sbjct: 242 TSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSIS 301

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN  T  S+L ACS   ++E G ++  ++     +  +      +++L G+ G +D+A  
Sbjct: 302 PNPFTLSSILQACSSLAMLEVGEQI-HAITMKLGLDGNKYAGAALINLYGKCGNMDKARS 360

Query: 364 LIESMS 369
           + + ++
Sbjct: 361 VFDVLT 366



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 82/147 (55%), Gaps = 15/147 (10%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG  +ID Y KCGS+  AR++FD +  +++++W++MI+++  HG+ K+A++ +  ML   
Sbjct: 37  LGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEG 96

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLR-------LFSSMWDDFAVRPDVKHYTCMVDLLGR 354
           VLP+  TF ++  A S  GL+  G R       L   + D F         + +VD+  +
Sbjct: 97  VLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVA-------SALVDMYAK 149

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALL 381
             ++ +A  L+    +EKD  L+ AL+
Sbjct: 150 FDKMRDA-HLVFRRVLEKDVVLFTALI 175



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 99/234 (42%), Gaps = 18/234 (7%)

Query: 57  SVDPK-FFISSLL-SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           S+ P  F +SS+L +C ++  +    Q+HA  +  G   N      L+ +Y     +  A
Sbjct: 299 SISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKA 358

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
            ++F+ + E D V+ + M+  +++        E F      G+  +  T   ++ AC + 
Sbjct: 359 RSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNA 418

Query: 172 KDIVMG-------RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
             +  G       R  H+I     L ID F C  ++D+  + + +++A  L +++   D+
Sbjct: 419 GLVEEGCQIFASIRNNHNI----ELTIDHFTC--MIDLLGRSRRLEEAAMLIEEVRNPDV 472

Query: 225 VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           V W  ++ + K   +V +   V+    +    D    I       +   W+ +I
Sbjct: 473 VLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVI 526


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/562 (39%), Positives = 313/562 (55%), Gaps = 59/562 (10%)

Query: 75  QIRQVHAQIVAGGTLTN----LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           Q R VHA  V   +L +    ++V   LL +YA    L  A  +F  M  R+ V+WS +V
Sbjct: 247 QGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALV 306

Query: 131 GGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           GGF      +  F  F++ +  G+  L   ++   +RAC +  D+ +G+ +H ++ KSGL
Sbjct: 307 GGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGL 366

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--------------------------- 222
             D     +L+ MYAK  +ID A  LFDQM  +                           
Sbjct: 367 HTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRK 426

Query: 223 --------DLVTWTVMIGANKFLLDVILG-------------------TAVIDMYAKCGS 255
                   D+ T   +I A   L  +  G                    A+IDMYAKCG 
Sbjct: 427 MQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGR 486

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           ID +R+IFD M  ++++SW+ MIA YG HG GK+A  LF  M      P+ +TF+ L+ A
Sbjct: 487 IDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISA 546

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH+GLV EG R F  M   + + P ++HY  MVDLL R G LDEA + I+ M ++ D  
Sbjct: 547 CSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVR 606

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +WGALLGACR+HKN+DL +  +  + +  P+  G++VLLSN+++ AGR+ + A++R +  
Sbjct: 607 VWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQK 666

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
            +  KK PG +WIE+   +H F  GD +H QS EIY+ L  +   +   GY  DT+F L 
Sbjct: 667 EQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQ 726

Query: 496 DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           DV+EE K   L  HSEKLAIAFG++   E   I + KNLRVCGDCH+ IK+++ + +R I
Sbjct: 727 DVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAI 786

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           IVRDANRFHHF+ G CSC D+W
Sbjct: 787 IVRDANRFHHFKNGQCSCGDFW 808



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 165/385 (42%), Gaps = 71/385 (18%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           S+LL  R+    R VH      G   +L V+  L+ +YA   +   A  +F  M  RD V
Sbjct: 140 SALLDLRSA---RAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 125 SWSVMVGGFS---KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           +W+ M+ G++   K +D I C    ++        ++ TL  ++        +  GR +H
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQD----DHAPNASTLVALLPLLAQHGALSQGRAVH 252

Query: 182 DIVLKSGLDIDQ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----- 232
              +++    D      V  AL+DMYAKC  +  A ++F+ M  R+ VTW+ ++G     
Sbjct: 253 AYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLC 312

Query: 233 -------------------------------ANKFLLDVILG------------------ 243
                                          A   L D+ LG                  
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 244 -TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             +++ MYAK G ID A  +FD+M  K+ +S+SA+++ Y  +G+  +A  +F  M +  V
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  T VSL+ ACSH   ++ G     S+     +  +      ++D+  + GR+D + 
Sbjct: 433 QPDVATMVSLIPACSHLAALQHGKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLSR 491

Query: 363 KLIESMSVEKDEGLWGALLGACRIH 387
           ++ + M   +D   W  ++    IH
Sbjct: 492 QIFDVMPA-RDIVSWNTMIAGYGIH 515



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 60/285 (21%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           Q ++YT PFV++AC    D+   R +H    ++GL  D FV  ALVD+YAKC     A  
Sbjct: 126 QPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAAT 185

Query: 215 LFDQMPTRDLVTWTVMIGANKF---LLDVILG---------------TAVIDMYAKCGSI 256
           +F +MP RD+V W  M+          D I                  A++ + A+ G++
Sbjct: 186 VFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGAL 245

Query: 257 DSAREI---------------------------------------FDRMRQKNVISWSAM 277
              R +                                       F+ M  +N ++WSA+
Sbjct: 246 SQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSAL 305

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRV-LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +  +   G+  +A  LF  ML+  +   +  +  S L AC++   +  G +L + +    
Sbjct: 306 VGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKS- 364

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +  D+     ++ +  +AG +D+A  L + M V KD   + AL+
Sbjct: 365 GLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVV-KDTVSYSALV 408



 Score = 40.0 bits (92), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 2/135 (1%)

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG +  AR +FD++    +  ++A+I AY   G          +       PN  TF  +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACS   L     R          +  D+   T +VD+  +      A  +   M   +
Sbjct: 136 LKACSAL-LDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPA-R 193

Query: 373 DEGLWGALLGACRIH 387
           D   W A+L    +H
Sbjct: 194 DVVAWNAMLAGYALH 208


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 305/554 (55%), Gaps = 54/554 (9%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+HA+ +   + TN  V   LL +YA    L  A  +F+ M    +V W+ ++  +    
Sbjct: 547  QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAG 606

Query: 138  DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            D        R     GM+ DS+T   V+ AC    D+  G  +     + G+    FV  
Sbjct: 607  DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVAT 666

Query: 198  ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
            A VD+Y KC  +  AR++FD+M  +D V W  M                           
Sbjct: 667  AAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKP 726

Query: 231  --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                          +GA             ++FL + +LGTA+IDMYAKCGS   A  +F
Sbjct: 727  DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 786

Query: 264  DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             +MR+K++I W+AMI   G  G  K A  L   M  S V  N  TF+ LL +C+HTGL++
Sbjct: 787  QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 846

Query: 324  EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            +G R F +M   + + P ++HY CMVDLL RAG L EA +L++ M +  +  + GALLG 
Sbjct: 847  DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGG 906

Query: 384  CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            C+IH+N +LAE   K L+  +P N G+YV+LSN+Y+N GRW+D AK+R  M  + ++K+P
Sbjct: 907  CKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVP 966

Query: 444  GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
              +W+E E K+H+F VGD +HP S++IY+ L  L  +++  GY P T   + DV++E K 
Sbjct: 967  ACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKE 1026

Query: 504  GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
              L  HSEKLAIAF L+ T  G  IR+ KNLRVC DCH+ IK VS IT R IIVRD NRF
Sbjct: 1027 HTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRF 1086

Query: 564  HHFEGGACSCRDYW 577
            H F  G+CSC DYW
Sbjct: 1087 HCFRDGSCSCNDYW 1100



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 59/278 (21%)

Query: 160 TLPFVIR-ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           T+P  ++ A R    +  G  +H   LK     +  V  +L+ +YAKC ++  A+++FD+
Sbjct: 527 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 586

Query: 219 MPTRDLVTWTVMIGA---------------NKF--------------------LLDVILG 243
           MP    V WT +I A               N F                    + D+  G
Sbjct: 587 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 646

Query: 244 -------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                              TA +D+Y KCG +  ARE+FD+MR K+ ++W AM+  Y  +
Sbjct: 647 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 706

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVK 343
           G  ++ALDLF  M +  + P+       L AC+  G ++ G +    + WD+F   P + 
Sbjct: 707 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 766

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             T ++D+  + G   EA  + + M  +KD  +W A++
Sbjct: 767 --TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMI 801


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 317/556 (57%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H+ ++    + N+ V+N LL  Y+ H ++ DA  LF+ M E+D VS++V++ G++  
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD 289

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                 F+ FRE          +    ++    +  D  MGR IH   + +  D +  V 
Sbjct: 290 GKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG 349

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTR---------------------------------- 222
            +LVDMYAKC   ++A  +F  +  R                                  
Sbjct: 350 NSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI 409

Query: 223 -DLVTWTVMIGANK-------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
            D  T+  ++ A+                    F+ +V  G+A++D+YAKCGSI  A + 
Sbjct: 410 ADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQT 469

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M  +N++SW+AMI+AY  +G+ +  L  F  M+ S + P+ ++F+ +L ACSH+GLV
Sbjct: 470 FQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLV 529

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEGL  F+SM   + + P  +HY  +VD+L R+GR +EA KL+  M ++ DE +W ++L 
Sbjct: 530 EEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLN 589

Query: 383 ACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           ACRIHKN +LA  AA  L   +  ++   YV +SN+YA AG+W++V+K+   M  R +KK
Sbjct: 590 ACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKK 649

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           +P ++W+E++++ H FS  D  HPQ EEI + +  L++ +E  GY PDT+  LH+ DE+ 
Sbjct: 650 LPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKF 709

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           KV +L  HSE+LAIAF LI+TPEG+ I +MKNLR C DCH+ IK +S I  R I VRD+ 
Sbjct: 710 KVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDST 769

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC D+W
Sbjct: 770 RFHHFRDGFCSCGDFW 785



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 181/369 (49%), Gaps = 37/369 (10%)

Query: 38  NPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL-TNLIVAN 96
           N ++ R+ ++ G D   +RS    F + + L    + Q RQ+  ++    T+ TN++++ 
Sbjct: 32  NNIDARI-VKTGFDPDTSRS---NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 87

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
                Y     L +A  LF+GM ER +V+W++++GG+S++  F   FE F +  RCG + 
Sbjct: 88  -----YVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEP 142

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDI---VLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           D  T   ++  C   +   MG  I  +   ++K G D    V   LVD Y K   +D A 
Sbjct: 143 DYVTFVTLLSGCNGHE---MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLAC 199

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILG-------------------TAVIDMYAKCG 254
           QLF +MP  D  T+  ++ AN  L D++LG                    A++D Y+K  
Sbjct: 200 QLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHD 259

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           S+  AR++FD M +++ +S++ +I+ Y + G+ K A DLF  +  +     +  F ++L 
Sbjct: 260 SVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLS 319

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
             S+T   E G ++ +      A   ++     +VD+  + G+ +EA ++I +    +  
Sbjct: 320 IASNTLDWEMGRQIHAQTIVTTA-DSEILVGNSLVDMYAKCGKFEEA-EMIFTNLTHRSA 377

Query: 375 GLWGALLGA 383
             W A++ A
Sbjct: 378 VPWTAMISA 386



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 155/363 (42%), Gaps = 91/363 (25%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           QI QV  QI+  G  + LIV N L+  Y     L  A  LF  M E              
Sbjct: 162 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPE-------------- 207

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                                +DS+T   V+ A     DIV+G+ IH  V+K+    + F
Sbjct: 208 ---------------------IDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVF 246

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLD--------- 239
           V  AL+D Y+K   + DAR+LFD+MP +D V++ V+I      G +K+  D         
Sbjct: 247 VSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTA 306

Query: 240 ---------------------------------------VILGTAVIDMYAKCGSIDSAR 260
                                                  +++G +++DMYAKCG  + A 
Sbjct: 307 FDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAE 366

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            IF  +  ++ + W+AMI+AY   G  ++ L LF  M  + V+ ++ TF SLL A +   
Sbjct: 367 MIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIA 426

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +  G +L S +        +V   + ++D+  + G + +A++  + M  +++   W A+
Sbjct: 427 SLSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAM 484

Query: 381 LGA 383
           + A
Sbjct: 485 ISA 487


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/583 (37%), Positives = 320/583 (54%), Gaps = 60/583 (10%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P+     SV P F    L+        + VH   V GG   N+ V   L+ +Y+    + 
Sbjct: 120 PNAVTISSVLPAFANLGLIRIA-----KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  LF  M ER+ V+W+ +V G+S         + F    R G+ +D YT+  +I A  
Sbjct: 175 VARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
               + +G  IH  ++++G + D+ +  AL+D+Y     +DDA ++F +M  +D+  WT+
Sbjct: 235 SVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTL 294

Query: 230 --------------------MIGANKFLLD------------------------------ 239
                               M+G     LD                              
Sbjct: 295 MLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKT 354

Query: 240 -----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                + +G+AVIDMYA CG+++ A+  F  M +K+V+ W+AMIA  G +G G  A+DLF
Sbjct: 355 CFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLF 414

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M  S + P+  TFVS+LYACSH G+V EGL++F  M     V P+++HY C++D+LGR
Sbjct: 415 LQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGR 474

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG+LD A   I +M  + D  ++  LLGACRIH N+ L    ++ + E +P + G+YVLL
Sbjct: 475 AGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLL 534

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+YA AG W+ V   R  +  +R+KK PG++ IE+  +I+ F  G+  HPQ  +I  +L
Sbjct: 535 SNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGIL 594

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             L  K++ AGY+P+TN  L DV +++K   LY HSEK+AIAFGL+ T   T IRI KNL
Sbjct: 595 KGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNL 654

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R C DCH+  K VS +  RV++++DANRFH F+ G CSCRDYW
Sbjct: 655 RTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 171/375 (45%), Gaps = 59/375 (15%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           S L   +++  ++Q+HAQI+  G   N  ++N L+  Y     L DA  +F+    ++ V
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVV 88

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           SW++++ G +K   F+   + FRE I    + ++ T+  V+ A  +   I + + +H   
Sbjct: 89  SWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------- 231
           ++ G + + FV  ALVDMY+K   +  ARQLF+ M  R++VTW  ++             
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAI 208

Query: 232 -----------------------------------GANKFLL------DVILGTAVIDMY 250
                                              G + F++      D  + TA++D+Y
Sbjct: 209 DLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIY 268

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITF 309
                +D A  +F  M  K+V +W+ M+  +       +A+  F  ML  + L  + I  
Sbjct: 269 VSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIAL 328

Query: 310 VSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           + +L +CSH+G +++G R+ + ++   FA    V   + ++D+    G L++A +    M
Sbjct: 329 MGILSSCSHSGALQQGRRVHALAIKTCFANNIFVG--SAVIDMYANCGNLEDAKRFFYGM 386

Query: 369 SVEKDEGLWGALLGA 383
             EKD   W A++  
Sbjct: 387 G-EKDVVCWNAMIAG 400


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 333/569 (58%), Gaps = 52/569 (9%)

Query: 61  KFFISSLLS-CRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHA 113
           ++ +SS++S C  +  +R   Q+H+  +  G  ++  V+  L+ +YA   + +A+  A+ 
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANK 313

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           +F  M++ D +SW+ ++ G+ +     N     F E +   ++ +  T   +++AC +  
Sbjct: 314 VFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANIS 373

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV------- 225
           D   GR +H  V+KS       V  ALV MYA+   +++AR++F+Q+  R ++       
Sbjct: 374 DHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCITEGR 433

Query: 226 ------------------TWTVMIGANK-------------------FLLDVILGTAVID 248
                             T+  +I A                     F  D  +  +++ 
Sbjct: 434 DAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVS 493

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY++CG ++ A   F+ ++ +NVISW++MI+    HG  ++AL LF  M+ + V PN +T
Sbjct: 494 MYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVT 553

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           ++++L ACSH GLV EG   F SM  D  + P ++HY CMVDLL R+G + EAL+ I  M
Sbjct: 554 YIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEM 613

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            ++ D  +W  LLGACR H N+++ E+AAK+++E +P++P  YVLLSN+YA+AG W +VA
Sbjct: 614 PLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVA 673

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           +IR  M    L K  G +W+EVEN  H+F  GD++HP++++IY  L TL  +++  GY+P
Sbjct: 674 RIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVP 733

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           DT+  LHD+ +E+K   L  HSEK+A+AFGLI T     IRI KNLRVC DCHS IK++S
Sbjct: 734 DTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMS 793

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
             TRR II+RD+NRFH  + G CSC +YW
Sbjct: 794 KATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 142/304 (46%), Gaps = 62/304 (20%)

Query: 77  RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKE-RDSVSWSVMVGGFS 134
           R +H +++ G  L  + +VAN LL +Y+   A+  A  +F+GM+  RD VSW+ M    +
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL-KSGL-DID 192
           +            E +  G+  ++YTL  V  AC   +   +   +   ++ K GL   D
Sbjct: 128 RNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTD 187

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVI- 241
             V +AL+DM A+   +  AR++FD +  + +V WT++I           A +  LD + 
Sbjct: 188 IAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLE 247

Query: 242 -------------------LGT------------------------AVIDMYAKCG---S 255
                              LG+                         ++DMYAK     +
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQA 307

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           +D A ++F+RMR+ +VISW+A+I+ Y   G Q  K + LF  ML+  + PN IT+ S+L 
Sbjct: 308 MDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILK 367

Query: 315 ACSH 318
           AC++
Sbjct: 368 ACAN 371



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 123/274 (44%), Gaps = 71/274 (25%)

Query: 173 DIVMGRLIHDIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQM-PTRDLVTWT-- 228
           D+ +GR +H  +L+  L D D  V  +L+ +Y++C  +  AR +FD M   RD+V+WT  
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 229 --------------VMIG--------ANKFLL---------------------------- 238
                         ++IG         N + L                            
Sbjct: 123 ASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               D+ +G+A+IDM A+ G + SAR++FD + +K V+ W+ +I+ Y      ++A+++F
Sbjct: 183 LWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIF 242

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVD 350
              L     P+R T  S++ AC+  G V  GL+L S      A+R       C    +VD
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHS-----LALRMGFASDACVSCGLVD 297

Query: 351 LLGRAG---RLDEALKLIESMSVEKDEGLWGALL 381
           +  ++     +D A K+ E M  + D   W AL+
Sbjct: 298 MYAKSNIEQAMDYANKVFERMR-KNDVISWTALI 330


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 301/551 (54%), Gaps = 75/551 (13%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P+     SV P     + + C        +H   V  G   +  V N L+ +Y+    + 
Sbjct: 398 PNTTTMASVMP-----ACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMD 452

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC----------------- 152
            +  +F+ M+ RD VSW+ M+ G+     + N      E  R                  
Sbjct: 453 ISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGG 512

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
             + ++ TL  V+  C     I  G+ IH   ++                          
Sbjct: 513 PYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIR-------------------------- 546

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                N    D+ +G+A++DMYAKCG ++ +R +F+ M  KNVI
Sbjct: 547 ---------------------NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVI 585

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLS-----SRVLPNRITFVSLLYACSHTGLVEEGLR 327
           +W+ +I A G HG+G++AL+LF  M++         PN +TF+++  ACSH+GL+ EGL 
Sbjct: 586 TWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLN 645

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE-GLWGALLGACRI 386
           LF  M  D  V P   HY C+VDLLGRAG+L+EA +L+ +M  E D+ G W +LLGACRI
Sbjct: 646 LFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRI 705

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           H+NV+L E+AAK+LL  +P    HYVLLSN+Y++AG W    ++R  M +  +KK PG +
Sbjct: 706 HQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCS 765

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
           WIE  +++H+F  GD +HPQSE+++  L TLSEK+   GY+PDT+  LH+VDE+ K   L
Sbjct: 766 WIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLL 825

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLAIAFG++ TP GT IR+ KNLRVC DCH+  K +S I  R IIVRD  RFHHF
Sbjct: 826 CGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHF 885

Query: 567 EGGACSCRDYW 577
           + G CSC DYW
Sbjct: 886 KEGTCSCGDYW 896



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 155/367 (42%), Gaps = 67/367 (18%)

Query: 77  RQVHAQIVA-GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            Q+HA  V  G   +++ VAN L+ +Y     + D   +F+ + +RD VSW+  +    +
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRD---RKDIVMGRLIHDIVLKSGLDID 192
              +    E FR      M+L S+TL  V  AC +      + +G+ +H   L+ G D  
Sbjct: 172 FEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQK 230

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVIL 242
            F   AL+ MYAK   +DD++ LF+    RD+V+W  MI           A  F   ++L
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 243 ------GTAVIDMYAKCGSID--------------------------------------- 257
                 G  +  +   C  ++                                       
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYAC 316
           S R +FD +  + +  W+AMI+ Y  +G  +KAL LF  M+  + +LPN  T  S++ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 317 SHTGLV--EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            H      +E +  ++        + D      ++D+  R G++D +  + +SM V +D 
Sbjct: 411 VHCEAFSNKESIHGYAV---KLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEV-RDR 466

Query: 375 GLWGALL 381
             W  ++
Sbjct: 467 VSWNTMI 473



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 113/266 (42%), Gaps = 52/266 (19%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R + SW   +   ++  DF     T+ E    G + D++  P V++A    +D+  G  I
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H   +K G                                                   V
Sbjct: 115 HAAAVKFGYGSSS----------------------------------------------V 128

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +   +++MY KCG I    ++FDR+  ++ +SW++ IAA     + ++AL+ F  M   
Sbjct: 129 TVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQME 188

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR-PDVKHYT--CMVDLLGRAGR 357
            +  +  T VS+  ACS+ G++  GLRL   +   +++R  D K +T   ++ +  + GR
Sbjct: 189 NMELSSFTLVSVALACSNLGVM-HGLRLGKQL-HGYSLRVGDQKTFTNNALMAMYAKLGR 246

Query: 358 LDEALKLIESMSVEKDEGLWGALLGA 383
           +D++  L ES  V++D   W  ++ +
Sbjct: 247 VDDSKALFESF-VDRDMVSWNTMISS 271


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 309/557 (55%), Gaps = 56/557 (10%)

Query: 77  RQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           + +HA ++  G    + + +   L+ +Y   + L  A  +F+G+ +   +SW+ M+  + 
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYI 304

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              +       F + +  GM  +  T+  +++ C     + +G+L+H   L++G  +   
Sbjct: 305 HCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLV 364

Query: 195 VCAALVDMYAKCKVIDDARQLFDQM----------------------------------- 219
           +  A +DMY KC  +  AR +FD                                     
Sbjct: 365 LATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCG 424

Query: 220 --PTRDLVTWTVMIGANKFLL-----------------DVILGTAVIDMYAKCGSIDSAR 260
             P    +   +MI A    L                 D+IL T+ +DMYA CG ID+A 
Sbjct: 425 IRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAH 484

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F     +++  W+AMI+ +  HG G+ AL+LF  M +  V PN ITF+  L+ACSH+G
Sbjct: 485 RLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSG 544

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           L++EG RLF  M  +F   P V+HY CMVDLLGRAG LDEA +LI+SM +  +  ++G+ 
Sbjct: 545 LLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSF 604

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L AC++HKN+ L E AAK  L  +P   G+ VL+SN+YA+A RW DVA IR  M    + 
Sbjct: 605 LAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIV 664

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K PG + IEV   +H+F +GD  HP ++++Y M+  + EKLE AGY PD +  LH++D+E
Sbjct: 665 KEPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKE 724

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            KV  L  HSEKLA+A+GLI+T  G  IRI+KNLRVC DCH+  K +S I  R IIVRD 
Sbjct: 725 KKVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDR 784

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G+CSC DYW
Sbjct: 785 NRFHHFKEGSCSCCDYW 801



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 165/373 (44%), Gaps = 58/373 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VH  +V  G   ++ V N L+ +Y+   +L  A  LF+ ++ +D VSWS M+  + + 
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV- 195
                  +  R+     ++     +  +     +  D+ +G+ +H  V+++G      V 
Sbjct: 204 GLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVP 263

Query: 196 -CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----NKF-----LLDVILGTA 245
            C AL+DMY KC+ +  AR++FD +    +++WT MI A    N       L   +LG  
Sbjct: 264 LCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG 323

Query: 246 -------VIDMYAKCGS--------------------------------------IDSAR 260
                  ++ +  +CG+                                      + SAR
Sbjct: 324 MFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD  + K+++ WSAMI++Y  +    +A D+F  M    + PN  T VSLL  C+  G
Sbjct: 384 SVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG 443

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +E G +   S  D   ++ D+   T  VD+    G +D A +L    + ++D  +W A+
Sbjct: 444 SLEMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAM 501

Query: 381 LGACRIHKNVDLA 393
           +    +H + + A
Sbjct: 502 ISGFAMHGHGEAA 514



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 139/296 (46%), Gaps = 60/296 (20%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           ++D++ +P V++AC      ++G+ +H  V+K+G   D FVC AL+ MY++   +  AR 
Sbjct: 121 EVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARL 180

Query: 215 LFDQMPTRDLVTWTVMIGAN-----------------------------------KFLLD 239
           LFD++  +D+V+W+ MI +                                      L D
Sbjct: 181 LFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELAD 240

Query: 240 VILGTAV---------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           + LG A+                     IDMY KC ++  AR +FD + + ++ISW+AMI
Sbjct: 241 LKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMI 300

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFA 337
           AAY +     + + LF  ML   + PN IT +SL+  C   G +E G  L + ++ + F 
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFT 360

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +   +   T  +D+ G+ G +  A  + +S    KD  +W A++ +   +  +D A
Sbjct: 361 LSLVLA--TAFIDMYGKCGDVRSARSVFDSFK-SKDLMMWSAMISSYAQNNCIDEA 413


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/561 (37%), Positives = 322/561 (57%), Gaps = 56/561 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N+    ++HA ++  G  +NL V N L+ +Y+           F  M ++D +SW+ ++ 
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           G+++    +   E FR+  +  M++D   L  ++RA    K +++ + IH  +L+ GL +
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 519

Query: 192 DQFVCAALVDMYAKCKVI-------------------------------DDARQLFDQMP 220
           D  +   LVD+Y KC+ +                                +A +LF +M 
Sbjct: 520 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMV 579

Query: 221 TRDLVTWTVMI-----------GANK------------FLLDVILGTAVIDMYAKCGSID 257
              L   +V +             NK            F L+  +  AV+DMYA CG + 
Sbjct: 580 ETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 639

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           SA+ +FDR+ +K ++ +++MI AYG HG GK A++LF  M    V P+ I+F++LLYACS
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GL++EG      M  ++ + P  +HY C+VD+LGRA  + EA + ++ M  E    +W
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVW 759

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            ALL ACR H   ++ E+AA+ LLE +P+NPG+ VL+SNV+A  GRW DV K+R  M   
Sbjct: 760 CALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKAS 819

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHD 496
            ++K PG +WIE++ K+H+F+  D +HP+S+EIY  L  ++ KLE   GY+ DT F LH+
Sbjct: 820 GMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHN 879

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VDE  KV  L+ HSE++AIA+GL+ TP+   +RI KNLRVC DCH+F K VS + RR I+
Sbjct: 880 VDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIV 939

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RDANRFHHFE G CSC D W
Sbjct: 940 MRDANRFHHFESGLCSCGDSW 960



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 170/397 (42%), Gaps = 84/397 (21%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F + L +C  +  IR   ++H+ +V  G  +   + N L+ +YA +  L+ A  LF+G +
Sbjct: 185 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244

Query: 120 ER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
           E+ D+V W+ ++  +S     +   E FRE    G   +SYT+   + AC       +G+
Sbjct: 245 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGK 304

Query: 179 LIHDIVLKSGLDIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----- 232
            IH  VLKS     + +VC AL+ MY +C  +  A ++  QM   D+VTW  +I      
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364

Query: 233 -----ANKFLLDVI--------------------------------------------LG 243
                A +F  D+I                                            +G
Sbjct: 365 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVG 424

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
             +IDMY+KC         F RM  K++ISW+ +IA Y  +    +AL+LF  +   R+ 
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484

Query: 304 PNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
            + +   S+L A S           H  ++ +GL        D  ++ +      +VD+ 
Sbjct: 485 IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-------DTVIQNE------LVDVY 531

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
           G+   +  A ++ ES+   KD   W +++ +  ++ N
Sbjct: 532 GKCRNMGYATRVFESIK-GKDVVSWTSMISSSALNGN 567



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 134/312 (42%), Gaps = 48/312 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNL-IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           R + Q RQ+H++I        L  +A KL+++Y    +L DA  +F+ M +R + +W+ M
Sbjct: 94  RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTM 153

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           +G +    +  +    +      G+ L   + P +++AC   +DI  G  +H +++K G 
Sbjct: 154 IGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGY 213

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249
               F+  ALV MYAK   +  AR+LFD    +                    G AV+  
Sbjct: 214 HSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK--------------------GDAVL-- 251

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
                                   W++++++Y   G+  + L+LF  M  +   PN  T 
Sbjct: 252 ------------------------WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTI 287

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           VS L AC      + G  + +S+        ++     ++ +  R G++ +A +++  M+
Sbjct: 288 VSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN 347

Query: 370 VEKDEGLWGALL 381
              D   W +L+
Sbjct: 348 -NADVVTWNSLI 358



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 25/283 (8%)

Query: 197 AALVDMYAKCKVIDDARQL----FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           A ++++  K + +   RQL    F   P+              F LD + G  V  MY K
Sbjct: 84  AYVLELCGKRRAVSQGRQLHSRIFKTFPS--------------FELDFLAGKLVF-MYGK 128

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CGS+D A ++FD M  +   +W+ MI AY  +G+   AL L+  M    V     +F +L
Sbjct: 129 CGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPAL 188

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC+    +  G  L  S+               +V +  +   L  A +L +    + 
Sbjct: 189 LKACAKLRDIRSGSELH-SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 373 DEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
           D  LW ++L +     K+++  E+  +  +      P  Y ++S + A  G     AK+ 
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFRE--MHMTGPAPNSYTIVSALTACDGF--SYAKLG 303

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
             +    LK     + + V N +          PQ+E I R +
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM 346


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/554 (39%), Positives = 305/554 (55%), Gaps = 54/554 (9%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+HA+ +   + TN  V   LL +YA    L  A  +F+ M    +V W+ ++  +    
Sbjct: 571  QLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAG 630

Query: 138  DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            D        R     GM+ DS+T   V+ AC    D+  G  +     + G+    FV  
Sbjct: 631  DLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFVAT 690

Query: 198  ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
            A VD+Y KC  +  AR++FD+M  +D V W  M                           
Sbjct: 691  AAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKP 750

Query: 231  --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                          +GA             ++FL + +LGTA+IDMYAKCGS   A  +F
Sbjct: 751  DCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVF 810

Query: 264  DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             +MR+K++I W+AMI   G  G  K A  L   M  S V  N  TF+ LL +C+HTGL++
Sbjct: 811  QQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQ 870

Query: 324  EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            +G R F +M   + + P ++HY CMVDLL RAG L EA +L++ M +  +  + GALLG 
Sbjct: 871  DGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGG 930

Query: 384  CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            C+IH+N +LAE   K L+  +P N G+YV+LSN+Y+N GRW+D AK+R  M  + ++K+P
Sbjct: 931  CKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVP 990

Query: 444  GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
              +W+E E K+H+F VGD +HP S++IY+ L  L  +++  GY P T   + DV++E K 
Sbjct: 991  ACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKE 1050

Query: 504  GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
              L  HSEKLAIAF L+ T  G  IR+ KNLRVC DCH+ IK VS IT R IIVRD NRF
Sbjct: 1051 HTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRF 1110

Query: 564  HHFEGGACSCRDYW 577
            H F  G+CSC DYW
Sbjct: 1111 HCFRDGSCSCNDYW 1124



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 124/278 (44%), Gaps = 59/278 (21%)

Query: 160 TLPFVIR-ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           T+P  ++ A R    +  G  +H   LK     +  V  +L+ +YAKC ++  A+++FD+
Sbjct: 551 TIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDE 610

Query: 219 MPTRDLVTWTVMIGA---------------NKF--------------------LLDVILG 243
           MP    V WT +I A               N F                    + D+  G
Sbjct: 611 MPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATG 670

Query: 244 -------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                              TA +D+Y KCG +  ARE+FD+MR K+ ++W AM+  Y  +
Sbjct: 671 ETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASN 730

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVK 343
           G  ++ALDLF  M +  + P+       L AC+  G ++ G +    + WD+F   P + 
Sbjct: 731 GHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 790

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             T ++D+  + G   EA  + + M  +KD  +W A++
Sbjct: 791 --TALIDMYAKCGSTVEAWVVFQQMR-KKDIIVWNAMI 825


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/600 (37%), Positives = 333/600 (55%), Gaps = 60/600 (10%)

Query: 38  NPMNPRVPMQMGPD-CQFTRSVDPKFFISSLL-SCRNIFQIRQ---VHAQIVAGGTLTNL 92
           N   PR  +Q   +  + +R+V  +F   SLL  C  + + +    +H Q+V     ++L
Sbjct: 55  NSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDL 114

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
            +   LL +YA    L  A  LF  M  R+ V W+ M+ G+ K          +++    
Sbjct: 115 YIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEED 174

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G   D  T+  ++ AC + KD+ +G  +H  + +  + I   + +ALV+MYAKC  +  A
Sbjct: 175 GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTA 234

Query: 213 RQLFDQMPTRDL------------------------------------VTWTVMIGANKF 236
           RQ+FDQ+  +D+                                    VT   +I A   
Sbjct: 235 RQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQ 294

Query: 237 LLD-------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           L D                   V L  ++IDM++KCG ID+A+ IFD M  K++ISW++M
Sbjct: 295 LGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSM 354

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +     HG G++AL  F +M ++ + P+ ITF+ +L ACSH GLV+EG +LF  +   + 
Sbjct: 355 VNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYG 414

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           VR   +HY CMVDLL RAG L EA + I  M ++ D  +WG++LGACR++ N++L E AA
Sbjct: 415 VRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAA 474

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           + LLE +P N G Y+LLSN+YA    W +V K+R+LM  + ++K PG + + ++N  H F
Sbjct: 475 RCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSF 534

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
             GD +HP+  EI  ML  + EKL+L GY+ DT+  L ++D+  K  ++  HSEKLA+ +
Sbjct: 535 LAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCY 594

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GL+ +  G  I I+KNLRVC DCH+ IK VS I +R I +RD NRFHHF+ G+CSCRDYW
Sbjct: 595 GLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 3/129 (2%)

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLY 314
           +  A  +F   R  +V++W++M+ A+      ++AL  +  ML  SR +P+R TF SLL 
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            C+     + G ++       + +  D+   T ++++    G L  A  L E M   +++
Sbjct: 88  GCALLLEFKVG-KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG-HRNK 145

Query: 375 GLWGALLGA 383
            +W +++  
Sbjct: 146 VVWTSMISG 154


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/578 (35%), Positives = 324/578 (56%), Gaps = 58/578 (10%)

Query: 57  SVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           +  P+ + S + +C   R++   R +HA +       ++ + N L+++Y    A+ DA  
Sbjct: 61  AATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARR 120

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+GM  RD  SW+ ++ G+++              +R   + + +T   +++A      
Sbjct: 121 VFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASAS 180

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
             +G  IH + +K     D +V +AL+DMYA+C  +D A  +FDQ+ +++ V+W  +I  
Sbjct: 181 SGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAG 240

Query: 234 -------------------NKF---------LLDVILG---------------------- 243
                              N F         +   I G                      
Sbjct: 241 FARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS 300

Query: 244 ----TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                 ++DMYAK GS+  AR++FDR+ +K+V++W++M+ A+  +G G++A+  F  M  
Sbjct: 301 AFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRK 360

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             V  N+ITF+S+L ACSH GLV+EG + F  M  ++ + P++ HY  +VDLLGRAG L+
Sbjct: 361 CGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLN 419

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +AL  I  M ++    +WGALLG+CR+HKN  + + AA  + E  P + G  VLL N+YA
Sbjct: 420 DALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYA 479

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
           + G+W   A++R +M    +KK P  +W+E+EN +H F   D THP+SEEIY+    +S 
Sbjct: 480 STGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISI 539

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           ++  AGY+P+T++ L  VDE+ +   L  HSEK+A+AF LI  P G  IRIMKN+R+CGD
Sbjct: 540 QIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGD 599

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CHS  +++S + +R I+VRD NRFHHF  G+CSC DYW
Sbjct: 600 CHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 282/475 (59%), Gaps = 54/475 (11%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           DS T P V++A     D  +G++IH IV++ G   D +   ALV +Y  C  I DA QLF
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 217 DQMPTRDLVTWTVM-----------------------------------------IGA-- 233
           D+MP R+ VTW  +                                         +GA  
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 234 -----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                      N+  L+V +GTA+IDMYAKCG++    ++F+ +R+KNV +W+ +I+ Y 
Sbjct: 208 QGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYA 267

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            +GQG  AL  F  ML     P+ +TF+ +L AC H GLV EG   F SM   F ++P +
Sbjct: 268 MNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRI 327

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY CMVDLLGRAG L+EAL+LI+SMS+E D  +W ALL ACR+H N  L E   K L+E
Sbjct: 328 EHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIE 387

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            +P N  +YVLLSN+Y+   RW +V K+R +M+ R ++K+PG + IE+ N +++F   + 
Sbjct: 388 LEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASND 447

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
             P+ E IY+ L  L +KL+  GY+  T+  L+D+++E K  ++  HSEKLA+AFGL+ +
Sbjct: 448 RKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNS 507

Query: 523 PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           P    +RI+KNLR+C DCH F K +S + +R I+VRD NRFHHF  G CSCRDYW
Sbjct: 508 PLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q + +H  I       N+ V   L+ +YA   A+ +   +F  ++E++  +W+V++ G++
Sbjct: 208 QGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYA 267

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL-IHDIVLKSGLD--I 191
                    + F   +    + D  T   V+ AC  +  +  GR     +  + GL   I
Sbjct: 268 MNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRI 327

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI 247
           + + C  +VD+  +  ++++A +L   M    D + W  ++ A +   +  LG  +I
Sbjct: 328 EHYGC--MVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYII 382


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 316/561 (56%), Gaps = 56/561 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N+ + ++VHA  +  G  +N+ + N L+ +YA    +      F  M E+D +SW+ ++ 
Sbjct: 364 NLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIA 423

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           G+++    +     FR+    GM +D   +  V+RAC   K     R IH  V K  L  
Sbjct: 424 GYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDL-A 482

Query: 192 DQFVCAALVDMYAKCKVID-------------------------------DARQLF---- 216
           D  +  A+V++Y +   ID                               +A +LF    
Sbjct: 483 DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 217 ------DQMPTRDLVTWTVMIGANK-------------FLLDVILGTAVIDMYAKCGSID 257
                 D +     ++ T  + + K             F L+  + ++++DMYA CG+++
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           ++R++F  ++Q+++I W++MI A G HG G KA+ LF  M    V+P+ ITF++LLYACS
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H+GL+ EG R F  M   + + P  +HY CMVDLL R+  L+EA   + +M ++    +W
Sbjct: 663 HSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIW 722

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            ALLGAC IH N +L E+AAK LL+   +N G Y L+SN++A  GRW DV ++R  M   
Sbjct: 723 CALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGN 782

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE-LAGYIPDTNFELHD 496
            LKK PG +WIEV+NKIH F   D +HPQ+++IY  L   ++ LE   GYI  T F  H+
Sbjct: 783 GLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHN 842

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V EE K   LY HSE+LA+ +GL+ TP+GT IRI KNLR+C DCH+F K  S +++R ++
Sbjct: 843 VSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLV 902

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDANRFHHFE G CSC D+W
Sbjct: 903 VRDANRFHHFERGLCSCGDFW 923



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 180/395 (45%), Gaps = 58/395 (14%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++      ++ VAN L+ +YA    + DA  +F  M  RD VSW+ ++ G  +   
Sbjct: 270 IHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNEL 329

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           + +    FR+    G + D  ++  +I A     +++ G+ +H   +++GLD +  +   
Sbjct: 330 YSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNT 389

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKF------------------- 236
           LVDMYAKC  +      F+ M  +DL++WT +I     N+F                   
Sbjct: 390 LVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVD 449

Query: 237 -------------------------------LLDVILGTAVIDMYAKCGSIDSAREIFDR 265
                                          L D++L  A++++Y + G ID AR  F+ 
Sbjct: 450 PMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFES 509

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           +R K+++SW++MI    ++G   +AL+LF  +  + + P+ I  +S L A ++   +++G
Sbjct: 510 IRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKG 569

Query: 326 LRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
             +   +    F +   +   + +VD+    G ++ + K+  S+  ++D  LW +++ A 
Sbjct: 570 KEIHGFLIRKGFFLEGPIA--SSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINAN 626

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
            +H   + A    K + + Q   P H   L+ +YA
Sbjct: 627 GMHGCGNKAIALFKKMTD-QNVIPDHITFLALLYA 660



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 179/427 (41%), Gaps = 69/427 (16%)

Query: 57  SVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           ++D   F S L +C  + + R   ++H   V  G    + V N L+ +Y     L  A  
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 114 LFNG--MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           LF+G  M++ D+VSW+ ++       + +     FR     G+  ++YT    ++   D 
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             + +G  IH  VLKS    D +V  AL+ MYAKC  ++DA ++F+ M  RD V+W  ++
Sbjct: 262 SFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLL 321

Query: 232 GA---NKFLLDVI----------------------------------------------- 241
                N+   D +                                               
Sbjct: 322 SGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLD 381

Query: 242 ----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
               +G  ++DMYAKC  +      F+ M +K++ISW+ +IA Y  +    +A++LF  +
Sbjct: 382 SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKV 441

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR---PDVKHYTCMVDLLGR 354
               +  + +   S+L ACS  GL     R F      +  +    D+     +V++ G 
Sbjct: 442 QVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLADIMLQNAIVNVYGE 496

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            G +D A +  ES+   KD   W +++  C +H  + +  +     L++    P    ++
Sbjct: 497 VGHIDYARRAFESIR-SKDIVSWTSMITCC-VHNGLPVEALELFYSLKQTNIQPDSIAII 554

Query: 415 SNVYANA 421
           S + A A
Sbjct: 555 SALSATA 561



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 69/368 (18%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +Q+HA ++   +  +  +A KL+ +Y    +L DA  +F+ M ER   SW+ ++G F 
Sbjct: 64  QGQQLHALLLK--SHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFV 121

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               ++   E +++    G+ +D+ T P V++AC    +  +G  IH + +K G     F
Sbjct: 122 SSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVF 181

Query: 195 VCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           VC AL+ MY KC  +  AR LFD   M   D V+W  +I                     
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSII--------------------- 220

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
                                 SA +A     G   +AL LF  M    V  N  TFV+ 
Sbjct: 221 ----------------------SAHVA----EGNCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 313 LYACSHTGLVEEGLRLFSSMW--DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           L        V+ G+ +  ++   + FA   DV     ++ +  + GR+++A ++ ESM +
Sbjct: 255 LQGVEDPSFVKLGMGIHGAVLKSNHFA---DVYVANALIAMYAKCGRMEDAGRVFESM-L 310

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSL-----LERQPQNPGHYVLLSNVYANAGRWQ 425
            +D   W  LL    + +N    E+ + +L     ++   Q P    +L N+ A +GR  
Sbjct: 311 CRDYVSWNTLLSG--LVQN----ELYSDALNYFRDMQNSGQKPDQVSVL-NLIAASGRSG 363

Query: 426 DVAKIRDL 433
           ++ K +++
Sbjct: 364 NLLKGKEV 371


>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 326/579 (56%), Gaps = 62/579 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFN 116
           + K  ++ L  C ++ ++R++HA ++  G   ++ +ANKLL   A+    +L  A  LF+
Sbjct: 3   NEKAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFH 62

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIV 175
            M+   + +W+ ++ GF++ +  I+    + + +     + D++T  FV++AC   K   
Sbjct: 63  QMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAER 122

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------------ 223
             + +H  V++ G D D  VC  LV  Y+   ++  ARQ+FD+MP RD            
Sbjct: 123 KCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVFDKMPARDLVAWNAMISCFS 182

Query: 224 -----------------------------LVTWTVMIGA-------------NKFLLDVI 241
                                        L++    +GA             N     + 
Sbjct: 183 QQGLHQEALQTYNQMRSENVDVDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLY 242

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +G A+IDMYAKCGS+D A  IFDRM++K++ +W++MI  YG HG+G +A+  F  ML +R
Sbjct: 243 VGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEAR 302

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + PN +TF+ LL  CSH GLV+EG++ F+ M   F ++P+VKHY C+VDL GRAG+LD+A
Sbjct: 303 IQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKA 362

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           L+++ S S   D  LW  LLG+C+IHKNV + E+A   L E    + G  +LL+ +YA  
Sbjct: 363 LEIV-SNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGE 421

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
                VA++R ++  +  K  PGW+WIE+  ++H+F V D +H  S E+Y  L  +  + 
Sbjct: 422 KDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQA 481

Query: 482 ELAGYIPD---TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
              GY+ D   ++ ++    E +K    Y HSEKLAIAFGL  T +GT IRI+KNLRVC 
Sbjct: 482 SFFGYVGDESISSLDMLSTMETLKTSCTY-HSEKLAIAFGLARTADGTQIRIVKNLRVCR 540

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHSFIK VS    R IIVRD  RFHHF+GG CSC DYW
Sbjct: 541 DCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 308/560 (55%), Gaps = 61/560 (10%)

Query: 77  RQVHAQIVAGGTLTNLI---VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           R  HAQI+   TL N +   + N L+ +Y+       A  L +    R  V+W+ ++ G 
Sbjct: 26  RAAHAQIIK--TLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS 83

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            +   F +    F    R  +Q + +T P   +A    +  ++G+ +H + +K+G   D 
Sbjct: 84  VQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDV 143

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-----------------TVMIGANK- 235
           FV  +  DMY+K  + ++AR++FD+MP R++ TW                 T  I A K 
Sbjct: 144 FVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKE 203

Query: 236 ------FLLDVIL------------------------------GTAVIDMYAKCGSIDSA 259
                 F++  +L                              G+A++DMY KCGSI+ A
Sbjct: 204 GIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDA 263

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACS 317
              FD M ++N+++W+AMI  Y + GQ   A+ LF  M   S RV PN +TFV +L ACS
Sbjct: 264 ERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACS 323

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V  G+ +F SM   + + P  +HY C+VDLLGRAG +++A + I+ M +     +W
Sbjct: 324 RAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVW 383

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           GALLGA ++    +L ++AA +L E  P + G++VLLSN++A AGRW++   +R  M   
Sbjct: 384 GALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDV 443

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            +KK  G +WI   N +H F   D++H ++ EI  ML  L  ++E AGYIPDT+F L D+
Sbjct: 444 GIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDL 503

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +EE K   ++ HSEK+A+AFGLI+ P G  IRI KNLR+CGDCHS IK +S I  R IIV
Sbjct: 504 EEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIV 563

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD N FH F    CSCRDYW
Sbjct: 564 RDNNLFHRFRDNQCSCRDYW 583


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/556 (38%), Positives = 311/556 (55%), Gaps = 89/556 (16%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACR 169
           A ALF+ M + D VSW+ ++ G+      I   ETF   ++   ++ D +TL  V+ AC 
Sbjct: 230 ALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACA 289

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV--------------------- 208
           +R+ + +G+ IH  ++++ +DI   V  AL+ MYAK                        
Sbjct: 290 NRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAF 349

Query: 209 ------------IDDARQLFDQMPTRDLVTWTVMI------------------------G 232
                       ID AR +FD +  RD+V WT MI                         
Sbjct: 350 TSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPK 409

Query: 233 ANKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            N + L  +L                              G A+I MY++ GSI  AR+I
Sbjct: 410 PNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKI 469

Query: 263 FDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F+ +   ++ ++W++MI +   HG G +A++LF  ML   + P+ IT+V +L AC+H GL
Sbjct: 470 FNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGL 529

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           VE+G   F+ M +   + P   HY CM+DLLGRAG L+EA   I +M +E D   WG+LL
Sbjct: 530 VEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLL 589

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            +CR+HK VDLA++AA+ LL   P N G Y+ L+N  +  G+W+D AK+R  M  + +KK
Sbjct: 590 SSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKK 649

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G++W++++NK+H F V D+ HPQ + IY M+  + ++++  G+IPDTN  LHD+++EV
Sbjct: 650 EQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEV 709

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLAIAF LI TP+ T +RIMKNLRVC DCHS I+++S +  R IIVRDA 
Sbjct: 710 KEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDAT 769

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G+CSC+DYW
Sbjct: 770 RFHHFKDGSCSCQDYW 785



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 156/341 (45%), Gaps = 58/341 (17%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGT-LTNLIVANKLLYIYALHKALTDAHALFNGMK-- 119
            + S +  R+ F  R +HA+I+  G     + + N LL +Y    + +DAH LF+ M   
Sbjct: 18  LLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLK 77

Query: 120 -----------------------------ERDSVSWSVMVGGFSKVADFINCFETFREFI 150
                                        + DSVSW+ M+ G++ +  F +    F   +
Sbjct: 78  TTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMV 137

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+    +T   V+ +C   + + +G+ +H  V+K G      V  +L++MYAKC    
Sbjct: 138 SSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSV 197

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            A+ +FD+M  +D  TW  MI                 M+ +    D A  +FD+M   +
Sbjct: 198 MAKVVFDRMRLKDTSTWNTMIS----------------MHMQFCQFDLALALFDQMTDPD 241

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++SW+++I  Y + G   +AL+ F  ML SS + P++ T  S+L AC++   ++ G ++ 
Sbjct: 242 IVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIH 301

Query: 330 SSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIE 366
           + +     VR DV         ++ +  ++G ++ A +++E
Sbjct: 302 AHI-----VRADVDIAGAVGNALISMYAKSGAVEVAHRIVE 337


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/527 (37%), Positives = 300/527 (56%), Gaps = 54/527 (10%)

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
           H  +  AH +F+     +   W+ ++ G+S     I+    +++   CG+  +SYT  FV
Sbjct: 14  HGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFV 73

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           + AC     +  G+ +H  ++K+GLD +  +   L+ +YA C  +D A  +FD+MP  D 
Sbjct: 74  LNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDS 133

Query: 225 VTWTVM------------------------IGANKFLL---------------------- 238
            +W+ M                        + ++ F L                      
Sbjct: 134 ASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSY 193

Query: 239 --------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                   DV+LGTA++ MY+KCGS+D+A ++F  M +++V +WS MIA Y  HG  +KA
Sbjct: 194 IDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEKA 253

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M  S+++PN +TF S+L A SH+GLVE+G ++F +MW ++ + P +KHY CMVD
Sbjct: 254 LQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVD 313

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L  RAG +  A K I++M +E +  LW  LLGAC+ H    L E  ++ +L+  P +P +
Sbjct: 314 LFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPEN 373

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YV +SNVYA+ GRW  V ++R LM  +  KK  GW+ IE+   +H+F +G+ +HP+ E+I
Sbjct: 374 YVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREKI 433

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y ML  ++ KL+  G++  T   LHD+DEE K   L  HSE+LAIA+GL+ TP G+ IRI
Sbjct: 434 YGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRI 493

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLR C DCH  IK +S +  R II+RD   FHHF    CSC DYW
Sbjct: 494 VKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/559 (36%), Positives = 320/559 (57%), Gaps = 55/559 (9%)

Query: 74  FQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
            +++++H   +  G + ++ +VAN  +  YA   +L  A  +F GM+ +   SW+ ++GG
Sbjct: 417 LKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGG 476

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
             +        + +      G++ D +T+  ++ AC   K +  G+ IH  +L++G ++D
Sbjct: 477 HVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELD 536

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDV--------- 240
           +F+C +LV +Y +C  I  A+  FD M  ++LV W  MI     N+F  D          
Sbjct: 537 EFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLS 596

Query: 241 ---------ILGT---------------------------------AVIDMYAKCGSIDS 258
                    I+G                                  ++IDMYAKCG ++ 
Sbjct: 597 SKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQ 656

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           ++ IFDR+  K  ++W+ +I  YG HG G+KA++LF  M ++   P+ +TF++LL AC+H
Sbjct: 657 SQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNH 716

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLV EGL     M   F ++P ++HY C+VD+LGRAGRL+EAL+L+  +  + D  +W 
Sbjct: 717 AGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWS 776

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           +LL +CR ++++D+ E  A  LLE  P    +YVL+SN YA  G+W +V K+R  M    
Sbjct: 777 SLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIG 836

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           L+K  G +WIE+  K+ +F VGD +  QS +I +  + L +K+   GY PDT+  LH+++
Sbjct: 837 LQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELE 896

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           E+ K+  L +HSEKLAI+FGL+ T +GT +R+ KNLR+C DCH+ IK VS I +R IIVR
Sbjct: 897 EDEKIKILRNHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVR 956

Query: 559 DANRFHHFEGGACSCRDYW 577
           D  RFHHF+ G CSC DYW
Sbjct: 957 DNKRFHHFKNGFCSCGDYW 975



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 142/320 (44%), Gaps = 64/320 (20%)

Query: 60  PKFFISSLLSC----RNIFQIRQVHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHAL 114
           PK  I  LL      +NI   R++H  I       N +++  +L+ +Y++  +  D+  +
Sbjct: 92  PKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLV 151

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKD 173
           FN  + ++   W+ ++ G+ + + F +    F E I     + D++TLP VI+AC    D
Sbjct: 152 FNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYD 211

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-- 231
           + +G  +H   LK+ +  D FV  AL+ MY K   ++ A ++FD+MP R+LV+W  ++  
Sbjct: 212 VRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYA 271

Query: 232 -------------------GANKFLLDVILGTAVI------------------------- 247
                              G    + DV     VI                         
Sbjct: 272 CLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLC 331

Query: 248 ----------DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PM 296
                     DMY+KCG +  AR +FD   +KNVISW++MI  Y      + A +L   M
Sbjct: 332 GELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKM 390

Query: 297 MLSSRVLPNRITFVSLLYAC 316
            +  +V  N +T +++L  C
Sbjct: 391 QMEDKVKVNEVTLLNVLPVC 410



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 160/368 (43%), Gaps = 67/368 (18%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           H   +  G    L V + LL +Y+    L +A  LF+   E++ +SW+ M+GG+SK  DF
Sbjct: 322 HGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDF 380

Query: 140 INCFETFREF-IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCA 197
              FE  R+  +   ++++  TL  V+  C +    +  + IH   L+ G +  D+ V  
Sbjct: 381 RGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVAN 440

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKFLL-------- 238
           A V  YAKC  +  A  +F  M ++ + +W  +IG            + +LL        
Sbjct: 441 AFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEP 500

Query: 239 DVILGTAVIDMYAKCGSIDSAREI-----------------------------------F 263
           D+    +++   A+  S+   +EI                                   F
Sbjct: 501 DLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFF 560

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           D M +KN++ W+ MI  +  +     ALD+F  MLSS++ P+ I+ +  L ACS    + 
Sbjct: 561 DNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALR 620

Query: 324 EGLRLFSSMWDDFAVRPDVKHY---TC-MVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            G  L       FAV+  +  +   TC ++D+  + G ++++  + + + + K E  W  
Sbjct: 621 LGKELHC-----FAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHL-KGEVTWNV 674

Query: 380 LLGACRIH 387
           L+    IH
Sbjct: 675 LITGYGIH 682



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 106/210 (50%), Gaps = 23/210 (10%)

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           ++D+V  S     Q +   L+ +  + K I+  R++ + + T           +  F  D
Sbjct: 81  LNDVVSSSNSKPKQLI-GLLLQLCGEYKNIEIGRKIHNFIST-----------SPHFQND 128

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V+L T ++ MY+ C S   +  +F+  R+KN+  W+A+++ Y  +   + A+ +F  M+S
Sbjct: 129 VVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMIS 188

Query: 300 -SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGR 354
            +  +P+  T   ++ AC   G+ +  +RL  ++   FA++     DV     ++ + G+
Sbjct: 189 LTEFVPDNFTLPCVIKAC--VGVYD--VRLGEAV-HGFALKTKVLSDVFVGNALIAMYGK 243

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGAC 384
            G ++ A+K+ + M  +++   W +++ AC
Sbjct: 244 FGFVESAVKVFDKMP-QRNLVSWNSVMYAC 272


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 335/600 (55%), Gaps = 60/600 (10%)

Query: 38  NPMNPRVPMQMGPD-CQFTRSVDPKFFISSLL-SCRNIFQIRQ---VHAQIVAGGTLTNL 92
           N   PR  +Q   +  + +R+V  +F   SLL  C  + + +    +H Q+V     ++L
Sbjct: 55  NSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDL 114

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
            +   LL +YA    L  A  LF  M  R+ V W+ M+ G+ K          +++    
Sbjct: 115 YIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEED 174

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G   D  T+  ++ AC + KD+ +G  +H  + +  + I   + +ALV+MYAKC  +  A
Sbjct: 175 GFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTA 234

Query: 213 RQLFDQMPTRDL------------------------------------VTWTVMIGANKF 236
           RQ+FD++  +D+                                    VT   +I A   
Sbjct: 235 RQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQ 294

Query: 237 LLD-------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           L D                   V L  ++IDM++KCG ID+A+ IFD M  K++ISW++M
Sbjct: 295 LGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSM 354

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +  +  HG G++AL  F +M ++ + P+ ITF+ +L ACSH GLV+EG +LF  +   + 
Sbjct: 355 VNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYG 414

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           VR   +HY CMVDLL RAG L EA + I  M ++ D  +WG++LGACR++ N++L E AA
Sbjct: 415 VRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAA 474

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           + LL+ +P N G Y+LLSN+YA    W +V K+R+LM  + ++K PG + + ++N  H F
Sbjct: 475 RFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSF 534

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
             GD +HP+  EI  ML  + EKL+LAGY+ DT+  L ++D+  K  ++  HSEKLA+ +
Sbjct: 535 LAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCY 594

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GL+ +  G  I I+KNLRVC DCH+ IK VS I +R I +RD NRFHHF+ G+CSCRDYW
Sbjct: 595 GLLKSEIGGRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score = 45.4 bits (106), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLY 314
           +  A  +F   R+ +V++W++M+ A+      ++AL  +  ML  SR +P+R TF SLL 
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            C+     + G ++       + +  D+   T ++++    G L  A  L E M   +++
Sbjct: 88  GCALLLEFKVG-KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMG-HRNK 145

Query: 375 GLWGALLGA 383
            +W +++  
Sbjct: 146 VVWTSMISG 154


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/475 (41%), Positives = 281/475 (59%), Gaps = 54/475 (11%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           DS T P V++A     D  +G++IH IV++ G   D +   ALV +Y  C  I DA QLF
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 217 DQMPTRDLVTWTVM-----------------------------------------IGA-- 233
           D+MP R+ VTW  +                                         +GA  
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 234 -----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                      N+  L+V +GTA+IDMYAKCG++    ++F+ +R+KNV +W+ +I+ Y 
Sbjct: 208 QGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYA 267

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            +GQG  AL  F  ML     P+ +TF+ +L AC H GLV EG   F SM   F ++P +
Sbjct: 268 MNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRI 327

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY CMVDLLGRAG L+EAL+LI+SMS+E D  +W ALL ACR+H N  L E   K L+E
Sbjct: 328 EHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIE 387

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            +P N  +YVLLSN+Y+   RW +V K+R +M  R ++K+PG + IE+ N +++F   + 
Sbjct: 388 LEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASND 447

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
             P+ E IY+ L  L +KL+  GY+  T+  L+D+++E K  ++  HSEKLA+AFGL+ +
Sbjct: 448 RKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNS 507

Query: 523 PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           P    +RI+KNLR+C DCH F K +S + +R I+VRD NRFHHF  G CSCRDYW
Sbjct: 508 PLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 79/177 (44%), Gaps = 6/177 (3%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q + +H  I       N+ V   L+ +YA   A+ +   +F  ++E++  +W+V++ G++
Sbjct: 208 QGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYA 267

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL-IHDIVLKSGLD--I 191
                    + F   +    + D  T   V+ AC  +  +  GR     +  + GL   I
Sbjct: 268 MNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRI 327

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI 247
           + + C  +VD+  +  ++++A +L   M    D + W  ++ A +   +  LG  +I
Sbjct: 328 EHYGC--MVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYII 382


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 332/597 (55%), Gaps = 87/597 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F   S    +   + +Q+HAQI+  G   +L V   L+ +YA +  + DAH +F+    R
Sbjct: 83  FLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR 142

Query: 122 DSVS-------------------------------WSVMVGGFSKVADFINCFETFREFI 150
           D VS                               W+ M+ G++++  +    E F E +
Sbjct: 143 DVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM 202

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+  C    ++ +GR IH  +   G   +  +  AL+D+Y+KC  ++
Sbjct: 203 KMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEME 262

Query: 211 -------------------------------DARQLFDQM-----PTRDLVTWTVM---- 230
                                          +A  +F +M        D+   +++    
Sbjct: 263 RAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACA 322

Query: 231 -IGA-----------NKFLLDVI----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            +GA           +K L  +I    L T++IDMYAKCG+I++A ++FD +  K++ S 
Sbjct: 323 HLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSC 382

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   A DL   M    + P+ ITFV LL ACSH GL + G ++F SM  
Sbjct: 383 NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTL 442

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLGR+G   EA +LI SM++E D  +WG+LL AC+IHKN++L E
Sbjct: 443 DYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGE 502

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
           + A+ L++ +P+NPG YVLLSN+YA + RW DVA++R L+  + LKK+PG + IE+++ +
Sbjct: 503 LIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMV 562

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F +GD  HPQ++EIY+ML  +   L   G++ DT+  L +++EE+K G L  HSEKLA
Sbjct: 563 HEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLA 622

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           IAFGLI+T  GT +RI+KNLRVC +CH   K +S I +R II RD +RFHHF+ G C
Sbjct: 623 IAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 176/344 (51%), Gaps = 29/344 (8%)

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            L  A ++F  ++E + +SW+ M+ G +  +D I+    +   I  G+  +SYT PF+ +
Sbjct: 27  GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFK 86

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           +C   K    G+ IH  +LK GL +D  V  +L+ MYA+  +++DA ++FD    RD+V+
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           +T MI                  YA  G++D A+++FD +  K+V+SW+AMI+ Y   G+
Sbjct: 147 YTAMITG----------------YASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGR 190

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            K+AL+LF  M+   V P+  T  ++L  C+H+G VE G R   S  D+     ++K   
Sbjct: 191 YKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELG-RQIHSWIDNHGFGSNLKLVN 249

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            ++DL  + G ++ A  L E +   KD   W  L+G      +   A +  + +L +  +
Sbjct: 250 ALIDLYSKCGEMERAHGLFEGLQY-KDVISWNTLIGGYAYINHHKEALLVFQEML-KLGE 307

Query: 407 NPGHYVLLSNVYANA-------GRWQDV---AKIRDLMTRRRLK 440
            P    +LS + A A       GRW  V    K++ ++T   L+
Sbjct: 308 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQ 351


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/565 (39%), Positives = 321/565 (56%), Gaps = 38/565 (6%)

Query: 40  MNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL 99
           M PR     GP C F         + S  + +++    Q+H+ +       N+ VA+  +
Sbjct: 112 MRPR-----GPAC-FPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAI 165

Query: 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-GMQLDS 158
            +Y+      DA+ +F+GM  RD VSW+ M+ GF++V  F    E F++F+   G   D+
Sbjct: 166 SMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDA 225

Query: 159 YTLPFVIRACRDRK--DIVMGRLIHDIVLKSGLDIDQFVC-AALVDMYAKCKVIDDARQL 215
            T+  ++ A  + K  DI   R + D      +   + +   A++ +YA  +    A +L
Sbjct: 226 GTMAGILPAMGNAKPDDIRFVRRVFD-----NMQFKELISWNAMLAVYANNEFHVKAVEL 280

Query: 216 FDQM-----------------PTRDLVTWTV------MIGANKFLLDVILGTAVIDMYAK 252
           F  M                 P  +L  ++V      +I       +++L  A++DMYA 
Sbjct: 281 FMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYAS 340

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG +  AREIFD M  ++VISW+++I+AYG HG G++A+DLF  ML   + P+ I FV++
Sbjct: 341 CGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAV 400

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACSH GL+ +G   F SM   + + P  +HYTCMVDLLGRAG ++EA   I +M +E 
Sbjct: 401 LAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEP 460

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           +E +WGALL ACRIH N+D+  +AA +L    P+  G+YVLLSN+YA AGRW DV  +R 
Sbjct: 461 NERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRS 520

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
           +M  + +KK PG + +E+ +++H F +GD  HPQSE IY  L  L  K+   GY P+   
Sbjct: 521 VMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEA 580

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            LHDV+EE K  +L  HSEKLAIAF L+ T  GT IR+  NLR C DCH   K +S IT 
Sbjct: 581 TLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITC 640

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I+++D NR HH   G CSC DYW
Sbjct: 641 REIVLKDTNRIHHIVQGVCSCGDYW 665


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/598 (36%), Positives = 322/598 (53%), Gaps = 70/598 (11%)

Query: 50  PDCQFTRSVDPKFF------------ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANK 97
           P CQFT +     F            +S L  C ++ +++Q+ A  +     +++ V  K
Sbjct: 7   PTCQFTLTKPSSAFSKNEFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTK 66

Query: 98  LLYIYALHKA---LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGM 154
           L+    L+     +  AH LF+ + ++D + +++M  G+++       F  F E +  G+
Sbjct: 67  LINFCTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGL 126

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
             D YT   +++AC   K +  G  +H   +K GL+ + ++C  L++MYA+C  ++ AR 
Sbjct: 127 LPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARG 186

Query: 215 LFDQM--------------------PTRDLVTWTVMIGANKFLLDVIL------------ 242
           +FD+M                    P   L  +  +  +N    DV +            
Sbjct: 187 VFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGA 246

Query: 243 ----------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                  TA+IDM+AKCGS+  A  IF+ MR ++  +WSAMI A
Sbjct: 247 LDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVA 306

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           +  HG G KA+ +F  M    V P+ ITF+ LLYACSH GLVE+G   F SM   + + P
Sbjct: 307 FATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITP 366

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            +KHY CMVDLLGRAG LDEA   ++ + ++    LW  LL AC  H NV++A+   + +
Sbjct: 367 GIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERI 426

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
            E    + G YV+LSN+YA  GRW+DV  +R LM  R + K+PG + +EV N +H+F  G
Sbjct: 427 FELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSG 486

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGL 519
           D  H  S E+ R L  L ++++L GY+PDT+   H D++EE K   L  HSEKLA+AFGL
Sbjct: 487 DGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGL 546

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + TP GT IR+ KNLR+CGDCH+  K +S I  R I++RD  RFH FE G CSC D+W
Sbjct: 547 LNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/521 (42%), Positives = 304/521 (58%), Gaps = 33/521 (6%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C  I  +R    +H+ +   G  + + V+N L+ +YA    +  A  +F+   E D 
Sbjct: 143 LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG 202

Query: 124 VSWSVMVGGFSKVADFINCFETF-----REFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            SW++M+GG+ K   F +    F     R+ +   + ++ Y      +        +MG 
Sbjct: 203 ASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGE 262

Query: 179 LI--HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
            I  ++ VL + L      CA L  M        +  Q  ++   R  V  TV       
Sbjct: 263 KIEPNESVLVNALS----ACAHLGAM--------EQGQWIERYMERKNVRLTVR------ 304

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                LGTA+IDMY+KCGS++ A E+F +M++KNV++WSAMI     +GQGK AL+LF  
Sbjct: 305 -----LGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQ 359

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    V PN +TF+ +L ACSH+ LV+EG   F SM   + ++P+  H+ CMVDL GRAG
Sbjct: 360 MEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAG 419

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            LD+A  +I+SM  + +  +WGALL ACRIH + +L E   K LLE  P + G YVLLSN
Sbjct: 420 MLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSN 479

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA  GRW  VA++R +M  R++ K PG ++I++ + IH+F  GDS+HPQ E IY  L  
Sbjct: 480 IYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGE 539

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           +S++L+ AGY PDT   L D+DEE K   L  HSEKLAIAFGLI T  GT IRI KNLRV
Sbjct: 540 MSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRV 599

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCHS  K +S I  R IIVRD  RFHHF  G+CSC D+W
Sbjct: 600 CADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 177/369 (47%), Gaps = 33/369 (8%)

Query: 24  TTAAIALEPHGHEQNPMNPRVPMQMGPD--CQFTRSVDPKFFISSLLSCRNIFQIRQVHA 81
           T + ++L    + QN   P +P    P   C++         +  L SC+ +  + Q+HA
Sbjct: 7   TVSPLSLPSQSNLQNQNPPWIPT---PQLLCKYP-------ILRHLSSCKTLKDLTQIHA 56

Query: 82  QIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           Q +  G  ++  VA+++L   AL  H ++  A  LF  +++ D    + ++  ++   + 
Sbjct: 57  QTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNP 116

Query: 140 INCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           I+    + E     +   D +T P +++AC +   + +G  IH  V K G   +  V   
Sbjct: 117 IDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNF 176

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           LV MYA C +I+ A  +FD+ P  D  +W +MIG                 Y KCG   S
Sbjct: 177 LVQMYASCGLIESAGLVFDRTPECDGASWNIMIGG----------------YLKCGVFKS 220

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR +F+ M  ++V+SWS MI  Y    + K+ L LF  M+  ++ PN    V+ L AC+H
Sbjct: 221 ARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAH 280

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G +E+G  +   M +   VR  V+  T ++D+  + G ++ AL++   M  EK+   W 
Sbjct: 281 LGAMEQGQWIERYM-ERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNVLAWS 338

Query: 379 ALLGACRIH 387
           A++    I+
Sbjct: 339 AMINGLAIN 347


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/561 (38%), Positives = 326/561 (58%), Gaps = 56/561 (9%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           ++ + QVHA I+  G   +  +  KLL +     +++    +F  +   DS  ++ ++  
Sbjct: 25  LYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKS 84

Query: 133 FSKVADF-INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            SK  +F I     +   +   +   +YT   VI++C D   +  GR++H  VL  G  +
Sbjct: 85  TSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGL 144

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR----------------------------- 222
           D +V AALV +Y KC  + +AR++FD++  R                             
Sbjct: 145 DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMK 204

Query: 223 ------DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSID 257
                 D  T+  ++ A                   N   L+V+LGT++I+MY +CG++ 
Sbjct: 205 ETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVS 264

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            ARE+FD M+++NV++W+AMI+ YG +G G +A++LF  M  + + PN ITFV++L AC+
Sbjct: 265 KAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACA 324

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGL 376
           H GLV EG RLF+S+ +++ + P V+H  C+VD+LGRAG LDEA   I E +       +
Sbjct: 325 HAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAI 384

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
             A+LGAC++HKN DL    A+ LL  +P+NP HYV+LSN+YA AGR   V  +R+ M R
Sbjct: 385 LTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYALAGRMDQVEIVRNNMIR 444

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + LKK  G++ +EV+ K + FS+GD +H ++  IY  L  L  K   AGY+P ++  +H+
Sbjct: 445 KCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWKCSEAGYVPVSDSVMHE 504

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++EE +   L  HSEKLAIAFGL+ T  GT IRI+KNLR+C DCHS IK +SAI+ R II
Sbjct: 505 LEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDCHSAIKFISAISSREII 564

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD  RFHHF+ G+CSC DYW
Sbjct: 565 VRDKLRFHHFKVGSCSCLDYW 585


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 329/565 (58%), Gaps = 57/565 (10%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFNGMKERDSVSWS 127
           C+++ + +QVH QI+  G   +   ++ +L   AL    ++  A ++F  + E  +  ++
Sbjct: 42  CKSLEEFKQVHVQILKFGLFLDSFCSSSVLATCALSDWNSMDYACSIFQQLDEPTTFDFN 101

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            M+ G+    +F N    + + ++  ++ D++T P V++AC     I  G  IH  V K 
Sbjct: 102 TMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGMQIHGHVFKL 161

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN------------- 234
           GL+ D +V  +L++MY KC+ I+ +  +F +M  + + +W+ +I A+             
Sbjct: 162 GLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWECLALF 221

Query: 235 -------------KFLLDVI-------------------------LGTAV----IDMYAK 252
                          L++V+                         L  AV    +DMY K
Sbjct: 222 EDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTSLMDMYVK 281

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CGS+     +F  M +KN +S+S +I+  G HG G++AL +F  M+   + P+ +T+VS+
Sbjct: 282 CGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVEEGLEPDDVTYVSV 341

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACSH+GLV+EGL LF  M  ++ + P ++HY CMVDL GRAG L+EA +L++SM ++ 
Sbjct: 342 LSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLEEAFQLVQSMPIKA 401

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           ++ LW +LL AC++H N+ L E+AA++L      NP  Y++LSN+YA A +W++ AKIR 
Sbjct: 402 NDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRT 461

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
            M  R L + PG++ +EV++K+++F   D ++ +S  IY+M+  +  +L   GY+PDT+ 
Sbjct: 462 KMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEWQLRFEGYMPDTSQ 521

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            + DVDEE K   L  HS+KLAIAF LI T +G+ IRI++NLR+C DCHS+ K VS I  
Sbjct: 522 VMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCNDCHSYTKLVSMIYE 581

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I VRD NRFHHF+ G CSCRDYW
Sbjct: 582 REITVRDRNRFHHFKDGNCSCRDYW 606


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/579 (36%), Positives = 318/579 (54%), Gaps = 85/579 (14%)

Query: 84  VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143
           V  G  +NL V    +++++L + +  A  +F+     + V+W++M+ G+++V  F    
Sbjct: 134 VKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSK 193

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
             F E  + G+  +S TL  ++ AC   KD+  G+ I+  +    ++ +  +   L+DM+
Sbjct: 194 MLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMF 253

Query: 204 AKCKVIDDA-------------------------------RQLFDQMPTRDLVTWTVMIG 232
           A C  +D+A                               R+ FDQ+P RD V+WT MI 
Sbjct: 254 AACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMID 313

Query: 233 A----NKFLL-------------------------------------------------- 238
                N+F+                                                   
Sbjct: 314 GYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN 373

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D  +G A+IDMY KCG++  A+++F  M  K+  +W+AMI     +G G++AL +F  M+
Sbjct: 374 DTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMI 433

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
            + + P+ IT++ +L AC+H G+VE+G   F SM     ++P+V HY CMVDLLGRAGRL
Sbjct: 434 EASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRL 493

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA ++I +M V+ +  +WG+LLGACR+HKNV LAEMAAK +LE +P+N   YVLL N+Y
Sbjct: 494 EEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVYVLLCNIY 553

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A   RW+++ ++R LM  R +KK PG + +E+   +++F  GD +HPQS+EIY  L  + 
Sbjct: 554 AACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMM 613

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           + L  AGY PDT+    D+ EE K   LY HSEKLAIA+ LI++  G  IRI+KNLR+C 
Sbjct: 614 QDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIVKNLRMCV 673

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH   K VS    R +IVRD  RFHHF  G+CSC ++W
Sbjct: 674 DCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/405 (20%), Positives = 172/405 (42%), Gaps = 89/405 (21%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKER 121
           IS L  C++++Q++Q+H+  +  G  ++ +   +++     H++  +  A  +F+ + + 
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQP 70

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
               W+ M+ G+S++    N    +   +   ++ D +T PF+++       +  G+++ 
Sbjct: 71  TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----------- 230
           +  +K G D + FV  A + M++ C+++D AR++FD     ++VTW +M           
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFK 190

Query: 231 -------------IGANKFLLDVIL----------GTAVIDMYAKCGSID---------- 257
                        +  N   L ++L          G   I  Y   G ++          
Sbjct: 191 KSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLI 250

Query: 258 ----------SAREIFDRMRQKNVISWSAMIAAYGYHGQGK------------------- 288
                      A+ +FD M+ ++VISW++++  +   GQ                     
Sbjct: 251 DMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTA 310

Query: 289 ------------KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
                       +AL LF  M  S V P+  T VS+L AC+H G +E G     +  D  
Sbjct: 311 MIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELG-EWVKTYIDKN 369

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +++ D      ++D+  + G + +A K+ + M   KD+  W A++
Sbjct: 370 SIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMH-HKDKFTWTAMI 413


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 316/567 (55%), Gaps = 55/567 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I   +S R + +   +   +   G    + + N L+ +Y     L DAH LF+ M +R+
Sbjct: 67  LIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 126

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            +SW+ M+  +SK        E     +R  ++ + YT   V+R+C    D+   R++H 
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHC 183

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDAR----------------------------- 213
            ++K GL+ D FV +AL+D++AK    +DA                              
Sbjct: 184 GIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV 243

Query: 214 --QLFDQMPTRDLV----TWTVMIGAN-----------------KFLLDVILGTAVIDMY 250
             +LF +M     +    T T ++ A                  K+  D+IL  A++DMY
Sbjct: 244 ALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMY 303

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            KCGS++ A  +F++M++++VI+WS MI+    +G  ++AL LF  M SS   PN IT V
Sbjct: 304 CKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIV 363

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +L+ACSH GL+E+G   F SM   + + P  +HY CM+DLLG+AG+LD+A+KL+  M  
Sbjct: 364 GVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC 423

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           E D   W  LLGACR+ +N+ LAE AAK ++   P++ G Y LLSN+YAN+ +W  V +I
Sbjct: 424 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEI 483

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M  R +KK PG +WIEV  +IH F +GD++HPQ  E+ + L  L  +L   GY+P+T
Sbjct: 484 RTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPET 543

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           NF L D++ E    +L  HSEKLA+AFGL+  P    IRI KNLR+CGDCH F K  S +
Sbjct: 544 NFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKL 603

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             R I++R   R+HHF+ G CSC DYW
Sbjct: 604 EIRSIVIRGPIRYHHFQDGKCSCGDYW 630


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 333/627 (53%), Gaps = 71/627 (11%)

Query: 9   FLVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQ---FTRSVDPKFFIS 65
           FL  I A+ R FS+   A I             P   + +G       FT       FIS
Sbjct: 61  FLSEIWAEPRLFSNLLQACI-------------PLKSVSLGKQLHSLIFTSGCSSDKFIS 107

Query: 66  S-LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           + LL+  + F   Q    +       N++  N ++  Y     L  A  LF+ M +R+  
Sbjct: 108 NHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVA 167

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           +W+ MV G +K          F          D Y+L  V+R C     ++ G+ +H  V
Sbjct: 168 TWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYV 227

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIGANK-------- 235
           +K G + +  V  +L  MY K   + D  ++ + MP   LV W T+M G  +        
Sbjct: 228 MKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVL 287

Query: 236 ----------FLLDVILGTAVID-----------------------------------MY 250
                     F  D I   +VI                                    MY
Sbjct: 288 DQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMY 347

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           ++CG +  + + F   ++++V+ WS+MIAAYG+HGQG++A+ LF  M    +  N ITF+
Sbjct: 348 SRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFL 407

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           SLLYACSH GL ++GL LF  M   + ++  ++HYTC+VDLLGR+G L+EA  +I SM V
Sbjct: 408 SLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPV 467

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           + D  +W  LL AC+IHKN ++A   A  +L   PQ+   YVLL+N+Y++A RWQ+V+++
Sbjct: 468 KADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEV 527

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M  + +KK PG +W+EV+N++HQF +GD  HP+  EI + L  L+ +++  GY+PDT
Sbjct: 528 RRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDT 587

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +  LHD+D E K   L  HSEKLAIAF L+ TPEG  IR+MKNLRVC DCH  IK++S I
Sbjct: 588 SSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEI 647

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  IIVRD++RFHHF+ G CSC DYW
Sbjct: 648 KKLEIIVRDSSRFHHFKNGTCSCGDYW 674


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/585 (35%), Positives = 314/585 (53%), Gaps = 84/585 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----------------- 119
           +Q+H Q++  G  + L+V + LLY+YA    ++DA  +F G+                  
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218

Query: 120 -------------ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
                        E+DSVSW+ M+ G ++        E FRE    G+++D Y    V+ 
Sbjct: 219 GMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLP 278

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           AC     I  G+ IH  ++++      +V +AL+DMY KCK +  A+ +FD+M  +++V+
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338

Query: 227 WTVMI----------GANKFLLD------------------------------------- 239
           WT M+           A K  LD                                     
Sbjct: 339 WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI 398

Query: 240 -------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                  V +  +++ +Y KCG ID +  +F+ M  ++ +SW+AM++AY   G+  + + 
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQ 458

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  M+   + P+ +T   ++ ACS  GLVE+G R F  M  ++ + P + HY+CM+DL 
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLF 518

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
            R+GRL+EA++ I  M    D   W  LL ACR   N+++ + AA+SL+E  P +P  Y 
Sbjct: 519 SRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 578

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLS++YA+ G+W  VA++R  M  + +KK PG +WI+ + K+H FS  D + P  ++IY 
Sbjct: 579 LLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYA 638

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  L+ K+   GY PDT+F  HDV+E VKV  L  HSE+LAIAFGLI  P G  IR+ K
Sbjct: 639 KLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGK 698

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH+  KH+S++T R I+VRDA RFH F+ G CSC D+W
Sbjct: 699 NLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 169/390 (43%), Gaps = 68/390 (17%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK---VADFINCFETF- 146
           NL   N LL  Y+    +++  + F  + +RD V+W+V++ G+S    V   +  + T  
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           R+F      L   TL  +++       + +G+ IH  V+K G +    V + L+ MYA  
Sbjct: 131 RDF---SANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANV 187

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
             I DA+++F  +  R+ V +  ++G    LL              CG I+ A ++F  M
Sbjct: 188 GCISDAKKVFYGLDDRNTVMYNSLMGG---LL-------------ACGMIEDALQLFRGM 231

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
            +K+ +SW+AMI     +G  K+A++ F  M    +  ++  F S+L AC   G + EG 
Sbjct: 232 -EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGK 290

Query: 327 RLF---------------SSMWD---------------DFAVRPDVKHYTCMVDLLGRAG 356
           ++                S++ D               D   + +V  +T MV   G+ G
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 350

Query: 357 RLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HY 411
           R +EA+K+   M    ++ D    G  + AC      +++ +   S    +    G  HY
Sbjct: 351 RAEEAVKIFLDMQRSGIDPDHYTLGQAISAC-----ANVSSLEEGSQFHGKAITSGLIHY 405

Query: 412 VLLSN----VYANAGRWQDVAKIRDLMTRR 437
           V +SN    +Y   G   D  ++ + M  R
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           +  L   ++  YA   S   AR +FDR+ Q N+ SW+ ++ AY       KA  +  M  
Sbjct: 40  ETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY------SKAGLISEMES 93

Query: 299 SSRVLPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +   LP+R  +T+  L+   S +GLV   ++ +++M  DF+
Sbjct: 94  TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFS 134


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/632 (34%), Positives = 344/632 (54%), Gaps = 81/632 (12%)

Query: 17  LRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQF----TRSVDPKFFISSLL---- 68
            R F ++    + L+   H+  P+            QF    T   DP  F+S+L+    
Sbjct: 2   FRLFHATLKTCMLLK---HQLKPLTYCCSFLSQTSLQFNAISTHHFDP--FLSTLILHLK 56

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S  ++   R +HA ++      +  + ++L+  Y       DA+ LF+ M ++D VSW+ 
Sbjct: 57  SSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNS 116

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDS------YTLPFVIRACRDRKDIVMGRLIHD 182
           +V G +K+     C   F     C M+ DS      +T   VI AC   K    G  +H 
Sbjct: 117 LVSGLAKIGQLGECLSVF-----CKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHC 171

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT--RDLVTWTVMIGA------- 233
             +K GL  +  V  ALV+MY K   ++ A +LF +MP   + +V+W  ++         
Sbjct: 172 CAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMP 231

Query: 234 ------------NKFLLD-----------------------------------VILGTAV 246
                       N F  D                                   + + T +
Sbjct: 232 NEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTL 291

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PN 305
           +++Y+K G ++++R++F+ + + + ++W+AM+A Y  HG GK+A++ F  ++    + P+
Sbjct: 292 LNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPD 351

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TF  LL ACSH+GLV+EG   F  M D + V+P + HY+CMVDLLGR G LD+A +LI
Sbjct: 352 HVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELI 411

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           ++M  E + G+WGALLGACR+H+N+DL + AAK+L+   P +P +Y++LSN+Y+ AG W 
Sbjct: 412 KNMPFEPNSGVWGALLGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWN 471

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           D +K+R LM  + L +  G ++IE  NKIH+F V D THP S  I++ L  + +K++  G
Sbjct: 472 DASKVRTLMKNKVLTRNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVG 531

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           ++ +T   LHDVDEEVK+  +  HSEK+A+A+GL+ T     + I+KNLR+C DCH+ +K
Sbjct: 532 FVHETESILHDVDEEVKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVK 591

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            VS + +R II+RD  RFH F GG CSC DYW
Sbjct: 592 FVSMVEKRTIIIRDTKRFHQFSGGLCSCGDYW 623


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/555 (38%), Positives = 326/555 (58%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H +I+  G   +L   N LL +Y     L DA  LF+ M ER+++S+  ++ G+++ 
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAES 117

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F+   E F    R  +  + +T   V++AC   + + +G  IH  V+K GL  D FV 
Sbjct: 118 VRFLEAIELFVRLHREVLP-NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVS 176

Query: 197 AAL-------------VDMYAKCKVIDD------------------ARQLFDQMPTRDL- 224
            AL             ++++A+    +D                  A +LF  M    + 
Sbjct: 177 NALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQ 236

Query: 225 ---VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
              VT++  + A                     F  D+++  A+IDMYAKCGSI  AR +
Sbjct: 237 ATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLV 296

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M +++ +SW+AMI+ Y  HG G++AL +F  M  + V P+++TFV +L AC++ GL+
Sbjct: 297 FDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLL 356

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G   F+SM  D  + P ++HYTCMV LLGR G LD+A+KLI+ +  +    +W ALLG
Sbjct: 357 DQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLG 416

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC IH +++L  ++A+ +LE +PQ+   +VLLSN+YA A RW +VA +R  M R+ +KK 
Sbjct: 417 ACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKE 476

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIE +  +H F+VGD++HP+   I  ML  L  K + AGYIP+ N  L DV++E K
Sbjct: 477 PGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEK 536

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L+ HSE+LA++FG+I TP G+ IRIMKNLR+C DCH+ IK +S + +R I+VRD NR
Sbjct: 537 ERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINR 596

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 597 FHHFQEGLCSCGDYW 611



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 128/286 (44%), Gaps = 55/286 (19%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + +S+     ++ C  + +   G+ +H  +LK G  +D F    L++MY K   + DA +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 215 LFDQMPTRDLVTWTVMIGA-----------------------NKFLL------------- 238
           LFD+MP R+ +++  +I                         N+F               
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLPNQFTFASVLQACATMEGL 154

Query: 239 -----------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                            DV +  A++D+YAKCG ++++ E+F     +N ++W+ +I  +
Sbjct: 155 NLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGH 214

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G G+KAL LF  ML  RV    +T+ S L AC+    +E GL++  S+        D
Sbjct: 215 VQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQI-HSLTVKTTFDKD 273

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           +     ++D+  + G + +A +L+  +  ++DE  W A++    +H
Sbjct: 274 IVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISGYSMH 318


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 306/542 (56%), Gaps = 55/542 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            +++   LL +YA   +L  A  +F+ M  R+ V+WS ++GGF   +     F  F+  +
Sbjct: 157 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 216

Query: 151 RCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G+  L   ++   +RAC     + MG  +H ++ KSG+  D     +L+ MYAK  +I
Sbjct: 217 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 210 DDARQLFDQMPTR-----------------------------------DLVTWTVMIGAN 234
           D A  LFD+M  +                                   D  T   +I A 
Sbjct: 277 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  +  G                    A+IDMYAKCG ID +R++F+ M  ++++SW+
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN 396

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MIA YG HG GK+A  LF  M +    P+ +TF+ LL ACSH+GLV EG   F  M   
Sbjct: 397 TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHG 456

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           + + P ++HY CMVDLL R G LDEA + I+SM +  D  +W ALLGACR++KN+DL + 
Sbjct: 457 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            ++ + E  P+  G++VLLSN+Y+ AGR+ + A++R +   +  KK PG +WIE+   +H
Sbjct: 517 VSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 576

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F  GD +HPQS EIYR L  +   ++  GY PDT+F L D++EE K   L  HSEKLAI
Sbjct: 577 AFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAI 636

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+G+++  E   I + KNLRVCGDCH+ IKH+S + RR IIVRDANRFHHF+ G CSC D
Sbjct: 637 AYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGD 696

Query: 576 YW 577
           +W
Sbjct: 697 FW 698



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 161/381 (42%), Gaps = 75/381 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   +  G   +L V+  LL +Y     L DA  +F  M  RD V+W+ M+ G++  
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 137 ADFINCFETFREFIRCGMQL-----DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
             +          +   MQ+     ++ TL  ++     +  +  G  +H   +++ L  
Sbjct: 90  GMY---HHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHP 146

Query: 192 DQ----------FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           ++           +  AL+DMYAKC  +  AR++FD MP R+ VTW+ +IG         
Sbjct: 147 NRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 206

Query: 234 NKFLL-----------------------------------------------DVILGTAV 246
             FLL                                               D+  G ++
Sbjct: 207 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 266

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           + MYAK G ID A  +FD M  K+ +S+SA+++ Y  +G+ ++A  +F  M +  V P+ 
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            T VSL+ ACSH   ++ G     S+     +  +      ++D+  + GR+D + ++  
Sbjct: 327 ATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFN 385

Query: 367 SMSVEKDEGLWGALLGACRIH 387
            M   +D   W  ++    IH
Sbjct: 386 MMP-SRDIVSWNTMIAGYGIH 405



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 59/258 (22%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           ++YT PF ++AC    D   GR IH   + +GL  D FV  AL+DMY KC  + DA  +F
Sbjct: 9   NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
             MP RDLV W  M                                              
Sbjct: 69  ATMPARDLVAWNAM---------------------------------------------- 82

Query: 277 MIAAYGYHGQGKKAL-DLFPM-MLSSRVLPNRITFVSLLYACSHTGLVEEGLR------- 327
            +A Y +HG    A+  L  M M   R+ PN  T V+LL   +  G + +G         
Sbjct: 83  -LAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIR 141

Query: 328 --LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
             L  +      +   V   T ++D+  + G L  A ++ ++M   ++E  W AL+G   
Sbjct: 142 ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA-RNEVTWSALIGGFV 200

Query: 386 IHKNVDLAEMAAKSLLER 403
           +   +  A +  K++L +
Sbjct: 201 LCSRMTQAFLLFKAMLAQ 218


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/487 (40%), Positives = 289/487 (59%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L+    ++  YA +  + +A  LF+G++ERD++ W+VM+ G+++          FR+ +
Sbjct: 5   SLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQML 64

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              ++ +  T+  V+ AC     +  GR +H  +  +G+ I+                  
Sbjct: 65  NAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGIN------------------ 106

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                        V +GT++IDMY+KCGS++ AR +F+R+  K+
Sbjct: 107 -----------------------------VRVGTSLIDMYSKCGSLEDARLVFERISNKD 137

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V++W++M+  Y  HG  + AL LF  M      P  ITF+ +L ACSH GLV EG + F 
Sbjct: 138 VVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFY 197

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM D++ + P V+HY CMV+LLGRAG L+EA +L+++M +++D  LWG LLGACR+H N+
Sbjct: 198 SMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNI 257

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
            L E  A+ L+ +   N G YVLLSN+YA AG W+ VA++R LM     +K PG + IEV
Sbjct: 258 ALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEV 317

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            NK+H+F  GD  HP+S EIY ML  ++  L+  GY P T+  LHD+++  K  +L  HS
Sbjct: 318 NNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKERSLGVHS 377

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+AFGLI T  GT I+I+KNLRVC DCH+  K +S IT R +++RD NRFHHF  G 
Sbjct: 378 EKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRFHHFVNGL 437

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 438 CSCGDYW 444



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 83/176 (47%), Gaps = 6/176 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VH+ I   G   N+ V   L+ +Y+   +L DA  +F  +  +D V+W+ MV G++  
Sbjct: 92  RWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMH 151

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQ 193
               +    F+E    G Q    T   V+ AC     +  G +  + +  + G++  ++ 
Sbjct: 152 GFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEH 211

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVID 248
           + C  +V++  +   +++A +L   M   +D V W  ++GA +   ++ LG  + +
Sbjct: 212 YGC--MVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAE 265


>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56550-like [Cucumis sativus]
          Length = 579

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/579 (37%), Positives = 325/579 (56%), Gaps = 62/579 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFN 116
           + K  ++ L  C ++ ++R++HA ++  G   ++ +ANKLL   A+    +L  A  LF+
Sbjct: 3   NEKAILALLQGCNSLKRLRKIHAHVIVSGLHHHVPIANKLLNFCAISVSGSLAYAQLLFH 62

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIV 175
            M+   + +W+ ++ GF++ +  I+    + + +     + D++T  FV++AC   K   
Sbjct: 63  QMECPQTEAWNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAER 122

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------------ 223
             + +H  V++ G D D  VC  LV  Y+    +  ARQ+FD+MP RD            
Sbjct: 123 KCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFS 182

Query: 224 -----------------------------LVTWTVMIGA-------------NKFLLDVI 241
                                        L++    +GA             N     + 
Sbjct: 183 QQGLHQEALQTYNQMRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLY 242

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +G A+IDMYAKCGS+D A  IFDRM++K++ +W++MI  YG HG+G +A+  F  ML +R
Sbjct: 243 VGNALIDMYAKCGSLDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEAR 302

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + PN +TF+ LL  CSH GLV+EG++ F+ M   F ++P+VKHY C+VDL GRAG+LD+A
Sbjct: 303 IQPNPVTFLGLLCGCSHQGLVQEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKA 362

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           L+++ S S   D  LW  LLG+C+IHKNV + E+A   L E    + G  +LL+ +YA  
Sbjct: 363 LEIV-SNSSHNDSVLWRILLGSCKIHKNVTIGEIAMNRLSELGATSAGDCILLATIYAGE 421

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
                VA++R ++  +  K  PGW+WIE+  ++H+F V D +H  S E+Y  L  +  + 
Sbjct: 422 KDKAGVARMRKMIKSQGKKTTPGWSWIEIGEQVHKFVVDDKSHRYSVEVYEKLREVIHQA 481

Query: 482 ELAGYIPD---TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
              GY+ D   ++ ++    E +K    Y HSEKLAIAFGL  T +GT IRI+KNLRVC 
Sbjct: 482 SFFGYVGDESISSLDMLSTMETLKTSCTY-HSEKLAIAFGLARTADGTQIRIVKNLRVCR 540

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHSFIK VS    R IIVRD  RFHHF+GG CSC DYW
Sbjct: 541 DCHSFIKAVSVAFNREIIVRDRVRFHHFKGGECSCNDYW 579


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/563 (38%), Positives = 319/563 (56%), Gaps = 58/563 (10%)

Query: 73  IFQIRQVHAQIVAGGTLTN---LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           +FQ   VHA  +      N   +++   LL +YA  K L  A  +F+GM  R+ V+WS +
Sbjct: 217 LFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSAL 276

Query: 130 VGGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +GGF         F  F++ +  GM  L + ++   +R C    D+ MG  +H ++ KSG
Sbjct: 277 IGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSG 336

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------------------------- 223
           +  D     +L+ MYAK  +I++A  LFD++  +D                         
Sbjct: 337 IHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFK 396

Query: 224 ----------LVTWTVMIGANKFL-------------------LDVILGTAVIDMYAKCG 254
                     + T   +I A   L                   L+  +  ++IDMYAKCG
Sbjct: 397 KMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCG 456

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ID +R++FD+M  ++++SW+ MIA YG HG GK+A  LF  M +    P+ +TF+ L+ 
Sbjct: 457 RIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIA 516

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH+GLV EG   F +M   + + P ++HY CMVDLL R G LDEA + I+SM ++ D 
Sbjct: 517 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADV 576

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +WGALLGACRIHKN+DL +  ++ + +  P+  G++VLLSN+++ AGR+ + A++R + 
Sbjct: 577 RVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQ 636

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             +  KK PG +WIE+   +H F  GD +HP S +IY  L  +   ++  GY  DT+F L
Sbjct: 637 KVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVL 696

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            D++EE K   L  HSEKLAIAFG+++  E   I + KNLRVCGDCH+ IK+++ +  R 
Sbjct: 697 QDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRT 756

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRDANRFHHF+ G CSC D+W
Sbjct: 757 IIVRDANRFHHFKNGQCSCGDFW 779



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 140/333 (42%), Gaps = 61/333 (18%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  +F+ +   D+ +++ ++  +S    F    + +R  +   +  + YT PFV++A
Sbjct: 49  LALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKA 108

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C    D+  GR IH      GL  D FV  AL+D+Y +C     A  +F +MP RD+V W
Sbjct: 109 CSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAW 168

Query: 228 TVMIG----------ANKFLLD--------------------------VILGTAV----- 246
             M+           A   LLD                          +  GT+V     
Sbjct: 169 NAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCL 228

Query: 247 -----------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                            +DMYAKC  +  A  +F  M  +N ++WSA+I  +    +  +
Sbjct: 229 RAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTE 288

Query: 290 ALDLFP-MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           A +LF  M++      +  +  S L  C+    +  G +L + +     +  D+     +
Sbjct: 289 AFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS-GIHADLTAGNSL 347

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           + +  +AG ++EA  L + +++ KD   +GALL
Sbjct: 348 LSMYAKAGLINEATMLFDEIAI-KDTISYGALL 379



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  AR++FDR+   +  +++A+I AY + G    A+DL+  ML  RV PN+ TF  +L
Sbjct: 47  GQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVL 106

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACS    +  G R   +      +  D+   T ++DL  R  R   A  +   M + +D
Sbjct: 107 KACSALADLCAG-RTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPM-RD 164

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
              W A+L     + N  +   A   LL+ Q
Sbjct: 165 VVAWNAMLAG---YANHGMYHHAIAHLLDMQ 192


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/493 (42%), Positives = 291/493 (59%), Gaps = 21/493 (4%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS-WSVMVGGFSKVADFINCFET 145
           G   + +  N ++  Y     +  A  LF GM +R  +S W+ M+ GFS+        E 
Sbjct: 200 GGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCG----MVEV 255

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            REF     + D  +   +I         +    I   + K  +   +FV  +++   A 
Sbjct: 256 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 315

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDR 265
              +D  R +                  N   LD +LGT+++DMYAKCG ID A E+F++
Sbjct: 316 LGALDQGRWIHTYAKR------------NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 363

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  K V SW+AMI     HG+ + A+DLF  M    + PN ITFV +L AC+H GLV++G
Sbjct: 364 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKG 420

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           L +F+SM  ++ V P ++HY C+VDLLGRAG L EA K++ S+  E    +WGALLGACR
Sbjct: 421 LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 480

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
            H NV+L E   K LLE +PQN G Y LLSN+YA AGRW++V ++R LM  R +K  PG 
Sbjct: 481 KHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGT 540

Query: 446 TWIEV-ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           + I++   ++H+F +GD +HPQ ++IY+ML  + E+L++ GY PD +  L D+DEE K  
Sbjct: 541 SIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKET 600

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            ++ HSEKLAI FGLI T  GT IRI+KNLRVC DCHS  K +S +  R IIVRD  R+H
Sbjct: 601 AVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYH 660

Query: 565 HFEGGACSCRDYW 577
           HF  GACSC+D+W
Sbjct: 661 HFRNGACSCKDFW 673



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 23  STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTR-SVDPKFFISSLLSCRNIFQIRQVHA 81
           S+TA  A E   H  + + P+     G   + ++ S      + +     ++  ++Q HA
Sbjct: 2   SSTATTATEAPYHHHHHLIPK-----GHSTETSKLSHKAILHLLNTQCTTSLHHLKQAHA 56

Query: 82  QIVAGGTLTNLIVANKLLYIYA-----LHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            I+  G L +  +A  L+  YA      + +   +  +F+ +++ +   W+ M+    + 
Sbjct: 57  LILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIEN 116

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +       + E +    + + YT P V++AC D   +  G  +H  ++K GL  D  + 
Sbjct: 117 NEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHIL 176

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI------GANKFLLDVILG------ 243
           ++ + MYA    + +AR++ D      D V W  MI      G  +   ++  G      
Sbjct: 177 SSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSM 236

Query: 244 ----TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                A+I  +++CG ++ ARE FD M++++ ISWSAMI  Y   G   +AL++F  M  
Sbjct: 237 ISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQK 296

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            ++ P +    S+L AC++ G +++G R   +     +++ D    T +VD+  + GR+D
Sbjct: 297 EKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 355

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            A ++ E MS  K+   W A++G   +H   + A
Sbjct: 356 LAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDA 388



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 10/174 (5%)

Query: 237 LLDVILGTAVIDMYAKCG-----SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
           L D  +  +++  YA        S +S+  +FD +R+ NV  W+ MI     + +  KA+
Sbjct: 64  LQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAI 123

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            L+  M+ +   PN+ T+ ++L ACS +G+V EG+++ + +     +  D    +  + +
Sbjct: 124 LLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLV-KHGLGGDGHILSSAIRM 182

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
               GRL EA ++++    E D   W A++        V+    AA+ L E  P
Sbjct: 183 YASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVE----AARELFEGMP 232


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 317/572 (55%), Gaps = 58/572 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I  L +C++       HA +   G L + I  N LL  Y   + +  AH LF+ M E + 
Sbjct: 13  IQQLKNCKDFIFAISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPNV 72

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ ++ G+  +    +    + +     +  + +TL  VI +C    D+  G+++H  
Sbjct: 73  VSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHAH 132

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
           V   GL  +  VC++LVDMY KC  +D AR +FD M  R++V+WT MI            
Sbjct: 133 VQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYEA 192

Query: 234 ---------------NKFLL------------------------------DVILGTAVID 248
                          N F+L                              + ++ +A++D
Sbjct: 193 LEVFREFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASALVD 252

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAKCGS   + ++F R+R  +VI +++MI     +G GK +L+LF  M   +V+PN +T
Sbjct: 253 MYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVT 312

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           FV +L+ACSH+GLV+EGLRL +SM +   V PDV+HYTC+VD+L R GRLDEA KL +S+
Sbjct: 313 FVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSI 372

Query: 369 SVEKDEG--LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
            V  +EG  LWG LL + R+H  VD+A  A+K L+E   Q  G YV LSN Y  AG W++
Sbjct: 373 RVNPNEGALLWGTLLSSSRLHGRVDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWEN 432

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
              +R  M    + K PG +WIE+++ I+ F  GD +  + +E+  +L  L  ++   G 
Sbjct: 433 AHSLRTEMELVGVHKEPGCSWIEIKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGC 492

Query: 487 I-PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           +   T     DV++EVK   +  HSE+LA+AFGLI+ P+G  IR+MKNLR+C DCH   K
Sbjct: 493 VGGSTGLVFVDVEQEVKEKIVGLHSERLALAFGLISIPKGVTIRVMKNLRICSDCHEAFK 552

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S I  R  +VRD NRFHHF+ G+C+C+D+W
Sbjct: 553 LISKIVERDFVVRDVNRFHHFKDGSCTCKDFW 584



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 92/358 (25%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +I+  ++ KD +     H  + K GL  D      L++ Y + + I  A  LFD+M   +
Sbjct: 12  IIQQLKNCKDFIFAISTHANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEMHEPN 71

Query: 224 LVTWTVM------------------------IGANKFLL--------------------- 238
           +V+WT +                        +  N F L                     
Sbjct: 72  VVSWTSLMSGYVNMGRPQSALWLYTKMSESEVSPNGFTLATVINSCSILADLKTGKMVHA 131

Query: 239 ---------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    ++++ ++++DMY KC  +D AR +FD M  +NV+SW+AMIA Y  +G+G +
Sbjct: 132 HVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSMSCRNVVSWTAMIAGYAQNGKGYE 191

Query: 290 ALDLFPMMLSSRVL--PNRITFVSLLYAC-----------SHTGLVEEGLRL----FSSM 332
           AL++F    SS ++  PN     S++ AC           +H  ++  G  L     S++
Sbjct: 192 ALEVFR-EFSSYMMERPNHFMLASVINACASLGRLVSGKVTHGAVIRGGYELNDVVASAL 250

Query: 333 WDDFAV---------------RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK---DE 374
            D +A                 P V  YT M+    + G    +L L E M+  K   ++
Sbjct: 251 VDMYAKCGSFLYSEKVFRRIRNPSVIPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPND 310

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDVAKI 430
             +  +L AC     VD       S+ E+    P   HY  + ++ +  GR  +  K+
Sbjct: 311 VTFVGILHACSHSGLVDEGLRLLNSMHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKL 368


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/562 (37%), Positives = 320/562 (56%), Gaps = 61/562 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GMKERDSVSWSVMVGGFSK 135
           +Q+HA  +     +N  V   L+ +YA  K + +A  LF     +R+ V W+ MV G+S+
Sbjct: 158 KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQ 217

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D     E FR+    G++ + +T P ++ AC        G  +H  +++SG   + FV
Sbjct: 218 NGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFV 277

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
            +ALVDMY+KC  + +AR++ + M   D V+W  MI                        
Sbjct: 278 GSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHM 337

Query: 234 --NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
             ++F    ++  A++DMYAK G  D A ++F++M  K+VISW++++    ++G  ++AL
Sbjct: 338 KIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEAL 397

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHT--------GLVEEGLRLFSSM-------W--- 333
            LF  M    + P++I   ++L A  ++        G +E+  ++F SM       W   
Sbjct: 398 RLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTAL 457

Query: 334 ------------------DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
                             + + ++P  +HY CM+DLLGR+G+L EA +L+  M+V+ D  
Sbjct: 458 IVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDAT 517

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +W ALL ACR+H NV+L E AA +L E +P+N   YVLLSN+Y+ AG+W++ AK R LM 
Sbjct: 518 VWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMK 577

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
            R + K PG +WIE+ +K+H+F   D +HP++ EIY  +  +   ++ AGY+PD NF LH
Sbjct: 578 LRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALH 637

Query: 496 DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           D+DEE K   L  HSEKLA+AFGL+  P G  IRI KNLR+CGDCH+ +K+VS +  R +
Sbjct: 638 DMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHV 697

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           I+RD+N FHHF  GACSC DYW
Sbjct: 698 ILRDSNCFHHFREGACSCSDYW 719



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 181/440 (41%), Gaps = 104/440 (23%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N ++  YA    L +A  LF     R  ++WS ++ G+ +    +   E F E    G +
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            + +T   V+R C     +  G+ IH   +K+  D + FV   LVDMYAKCK I +A  L
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 216 FDQMP-TRDLVTWTVM------------------------IGANKFLL------------ 238
           F+  P  R+ V WT M                        I  N+F              
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 239 ------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                             +V +G+A++DMY+KCG + +AR + + M   + +SW++MI  
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 281 YGYHGQGKKALDLF---------------PMMLSSRVL---------------------P 304
               G G++AL LF               P ++++ ++                      
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDK 375

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--------VKHYTCMVDLLGRAG 356
           + I++ SL+  C H G  EE LRLF  M     + PD              +V +  + G
Sbjct: 376 DVISWTSLVTGCVHNGSYEEALRLFCEM-RIMGIHPDQIVIAAVLSALDNSLVSMYAKCG 434

Query: 357 RLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
            +++A K+ +SM ++ D   W AL+ G  +  +  D  + + + +   +P  P HY  + 
Sbjct: 435 CIEDANKVFDSMEIQ-DVITWTALIVGYAQNGRGRDYFQ-SMEEVYGIKP-GPEHYACMI 491

Query: 416 NVYANAGRWQDVAKIRDLMT 435
           ++   +G+  +  ++ + M 
Sbjct: 492 DLLGRSGKLMEAKELLNQMA 511



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 19/179 (10%)

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
           +KC  +DDAR+LFD MP RD  +W  MIGA                YA  G ++ AR++F
Sbjct: 52  SKCGRVDDARKLFDVMPDRDECSWNTMIGA----------------YANSGRLNEARKLF 95

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
                ++ I+WS++I+ Y  +G   +AL+LF  M      PN+ T+ S+L  CS   L+E
Sbjct: 96  YETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLE 155

Query: 324 EGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +G ++ + ++   F     V   T +VD+  +   + EA  L E    +++  LW A++
Sbjct: 156 KGKQIHAHAIKTQFDSNAFV--VTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMV 212


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 327/590 (55%), Gaps = 61/590 (10%)

Query: 48  MGPDCQFTRSVDPKFFISSLL-SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYA 103
           M  + Q  R     F    LL +C  +  +   R VHAQ+   G   ++ V N L+ +YA
Sbjct: 106 MYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA 165

Query: 104 LHKALTDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
             + L  A  +F G+   ER  VSW+ +V  +++  + +   E F +  +  ++ D   L
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVAL 225

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD---- 217
             V+ A    +D+  GR IH  V+K GL+I+  +  +L  MYAKC  +  A+ LFD    
Sbjct: 226 VSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKS 285

Query: 218 ---------------------------QMPTRDLVTWTVMI------------------- 231
                                      +M  +D+   T+ I                   
Sbjct: 286 PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSM 345

Query: 232 ----GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
               G + +  DV + +A+IDM+AKCGS++ AR +FDR   ++V+ WSAMI  YG HG+ 
Sbjct: 346 YEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRA 405

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           ++A+ L+  M    V PN +TF+ LL AC+H+G+V EG   F+ M  D  + P  +HY C
Sbjct: 406 REAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYAC 464

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           ++DLLGRAG LD+A ++I+ M V+    +WGALL AC+ H++V+L E AA+ L    P N
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            GHYV LSN+YA A  W  VA++R  M  + L K  G +W+EV  ++  F VGD +HP+ 
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           EEI R +  +  +L+  G++ + +  LHD+++E     L SHSE++AIA+GLI+TP+GT 
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTP 644

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +RI KNLR C +CH+  K +S +  R I+VRD NRFHHF+ G CSC DYW
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 184/383 (48%), Gaps = 60/383 (15%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F+ S + S  +  Q++Q+HA+++  G   +  +  KL++  +    +T A  +F+ +   
Sbjct: 23  FYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRP 82

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
               W+ ++ G+S+   F +    +       +  DS+T P +++AC     + MGR +H
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGA------ 233
             V + G D D FV   L+ +YAKC+ +  AR +F+   +P R +V+WT ++ A      
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 234 ---------------------------NKF--LLDVILG----TAVIDM----------- 249
                                      N F  L D+  G     +V+ M           
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 250 ----YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
               YAKCG + +A+ +FD+M+  N+I W+AMI+ Y  +G  ++A+D+F  M++  V P+
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            I+  S + AC+  G +E+   ++  +   D+  R DV   + ++D+  + G + E  +L
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSV-EGARL 379

Query: 365 IESMSVEKDEGLWGALLGACRIH 387
           +   ++++D  +W A++    +H
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLH 402


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/542 (39%), Positives = 306/542 (56%), Gaps = 55/542 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            +++   LL +YA   +L  A  +F+ M  R+ V+WS ++GGF   +     F  F+  +
Sbjct: 272 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 331

Query: 151 RCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G+  L   ++   +RAC     + MG  +H ++ KSG+  D     +L+ MYAK  +I
Sbjct: 332 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 391

Query: 210 DDARQLFDQMPTR-----------------------------------DLVTWTVMIGAN 234
           D A  LFD+M  +                                   D  T   +I A 
Sbjct: 392 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 451

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  +  G                    A+IDMYAKCG ID +R++F+ M  ++++SW+
Sbjct: 452 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN 511

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MIA YG HG GK+A  LF  M +    P+ +TF+ LL ACSH+GLV EG   F  M   
Sbjct: 512 TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHG 571

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           + + P ++HY CMVDLL R G LDEA + I+SM +  D  +W ALLGACR++KN+DL + 
Sbjct: 572 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 631

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            ++ + E  P+  G++VLLSN+Y+ AGR+ + A++R +   +  KK PG +WIE+   +H
Sbjct: 632 VSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 691

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F  GD +HPQS EIYR L  +   ++  GY PDT+F L D++EE K   L  HSEKLAI
Sbjct: 692 AFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAI 751

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+G+++  E   I + KNLRVCGDCH+ IKH+S + RR IIVRDANRFHHF+ G CSC D
Sbjct: 752 AYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGD 811

Query: 576 YW 577
           +W
Sbjct: 812 FW 813



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 161/381 (42%), Gaps = 75/381 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   +  G   +L V+  LL +Y     L DA  +F  M  RD V+W+ M+ G++  
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 137 ADFINCFETFREFIRCGMQL-----DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
             +          +   MQ+     ++ TL  ++     +  +  G  +H   +++ L  
Sbjct: 205 GMY---HHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHP 261

Query: 192 DQ----------FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           ++           +  AL+DMYAKC  +  AR++FD MP R+ VTW+ +IG         
Sbjct: 262 NRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 321

Query: 234 NKFLL-----------------------------------------------DVILGTAV 246
             FLL                                               D+  G ++
Sbjct: 322 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 381

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           + MYAK G ID A  +FD M  K+ +S+SA+++ Y  +G+ ++A  +F  M +  V P+ 
Sbjct: 382 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 441

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            T VSL+ ACSH   ++ G     S+     +  +      ++D+  + GR+D + ++  
Sbjct: 442 ATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFN 500

Query: 367 SMSVEKDEGLWGALLGACRIH 387
            M   +D   W  ++    IH
Sbjct: 501 MMP-SRDIVSWNTMIAGYGIH 520



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 126/309 (40%), Gaps = 61/309 (19%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFI--NCFETFREFIRCGMQLDSYTLPFVI 165
           L+ AH LF+ +   D  +++ ++  +S  +     +    +R  +R  +  ++YT PF +
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           +AC    D   GR IH   + +GL  D FV  AL+DMY KC  + DA  +F  MP RDLV
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
            W  M                                               +A Y +HG
Sbjct: 193 AWNAM-----------------------------------------------LAGYAHHG 205

Query: 286 QGKKAL-DLFPM-MLSSRVLPNRITFVSLLYACSHTGLVEEGLR---------LFSSMWD 334
               A+  L  M M   R+ PN  T V+LL   +  G + +G           L  +   
Sbjct: 206 MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNS 265

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
              +   V   T ++D+  + G L  A ++ ++M   ++E  W AL+G   +   +  A 
Sbjct: 266 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA-RNEVTWSALIGGFVLCSRMTQAF 324

Query: 395 MAAKSLLER 403
           +  K++L +
Sbjct: 325 LLFKAMLAQ 333



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 14/137 (10%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA--LDLFPMMLSSRVLPNRITFVS 311
           G +  A  +FD++   +V +++ +I AY        A  L L+  ML  RV PN  TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 312 LLYACS-----HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            L ACS     H G       + + +  D  V       T ++D+  +   L +A  +  
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVS------TALLDMYVKCACLPDAAHIFA 184

Query: 367 SMSVEKDEGLWGALLGA 383
           +M   +D   W A+L  
Sbjct: 185 TMPA-RDLVAWNAMLAG 200


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/561 (39%), Positives = 317/561 (56%), Gaps = 57/561 (10%)

Query: 74  FQIRQ-VHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           ++IR  +H+   +   LT+ +++   LL +YA   +L  A  +F+ M  R+ V+WS ++G
Sbjct: 253 YRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIG 312

Query: 132 GFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           GF   +     F  F+  +  G+  L   ++   +RAC     + MG  +H ++ KSG+ 
Sbjct: 313 GFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVH 372

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---------------------------- 222
            D     +L+ MYAK  +ID A  LFD+M  +                            
Sbjct: 373 ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKM 432

Query: 223 -------DLVTWTVMIGANKFLLDVILG-------------------TAVIDMYAKCGSI 256
                  D  T   +I A   L  +  G                    A+IDMYAKCG I
Sbjct: 433 QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRI 492

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           D +R++F+ M  ++++SW+ MIA YG HG GK+A  LF  M +    P+ +TF+ LL AC
Sbjct: 493 DLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSAC 552

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH+GLV EG   F  M   + + P ++HY CMVDLL R G LDEA + I+SM +  D  +
Sbjct: 553 SHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRV 612

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W ALLGACR++KN+DL +  ++ + E  P+  G++VLLSN+Y+ AGR+ + A++R +   
Sbjct: 613 WVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKV 672

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           +  KK PG +WIE+   +H F  GD +HPQS EIYR L  +   ++  GY PDT+F L D
Sbjct: 673 QGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQD 732

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++EE K   L  HSEKLAIA+G+++  E   I + KNLRVCGDCH+ IKH+S + RR II
Sbjct: 733 LEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAII 792

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDANRFHHF+ G CSC D+W
Sbjct: 793 VRDANRFHHFKNGQCSCGDFW 813



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 161/381 (42%), Gaps = 75/381 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   +  G   +L V+  LL +Y     L DA  +F  M  RD V+W+ M+ G++  
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 137 ADFINCFETFREFIRCGMQL-----DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
             +          +   MQ+     ++ TL  ++     +  +  G  +H   +++ L  
Sbjct: 205 GMY---HHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHS 261

Query: 192 DQ----------FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           ++           +  AL+DMYAKC  +  AR++FD MP R+ VTW+ +IG         
Sbjct: 262 NRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 321

Query: 234 NKFLL-----------------------------------------------DVILGTAV 246
             FLL                                               D+  G ++
Sbjct: 322 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 381

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           + MYAK G ID A  +FD M  K+ +S+SA+++ Y  +G+ ++A  +F  M +  V P+ 
Sbjct: 382 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 441

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            T VSL+ ACSH   ++ G     S+     +  +      ++D+  + GR+D + ++  
Sbjct: 442 ATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFN 500

Query: 367 SMSVEKDEGLWGALLGACRIH 387
            M   +D   W  ++    IH
Sbjct: 501 MMP-SRDIVSWNTMIAGYGIH 520



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 127/309 (41%), Gaps = 61/309 (19%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFI--NCFETFREFIRCGMQLDSYTLPFVI 165
           L+ AH LF+ +   D  +++ ++  +S  +     +    +R  +R  +  ++YT PF +
Sbjct: 73  LSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFAL 132

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           +AC    D   GR IH   + +GL  D FV  AL+DMY KC  + DA  +F  MP RDLV
Sbjct: 133 KACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLV 192

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
            W  M                                               +A Y +HG
Sbjct: 193 AWNAM-----------------------------------------------LAGYAHHG 205

Query: 286 QGKKAL-DLFPM-MLSSRVLPNRITFVSLLYACSHTGLVEEGLR---------LFSSMWD 334
               A+  L  M M   R+ PN  T V+LL   +  G + +G           L S+   
Sbjct: 206 MYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNS 265

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
              +   V   T ++D+  + G L  A ++ ++M   ++E  W AL+G   +   +  A 
Sbjct: 266 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA-RNEVTWSALIGGFVLCSRMTQAF 324

Query: 395 MAAKSLLER 403
           +  K++L +
Sbjct: 325 LLFKAMLAQ 333



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 14/137 (10%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA--LDLFPMMLSSRVLPNRITFVS 311
           G +  A  +FD++   +V +++ +I AY        A  L L+  ML  RV PN  TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 312 LLYACS-----HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            L ACS     H G       + + +  D  V       T ++D+  +   L +A  +  
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVS------TALLDMYVKCACLPDAAHIFA 184

Query: 367 SMSVEKDEGLWGALLGA 383
           +M   +D   W A+L  
Sbjct: 185 TMPA-RDLVAWNAMLAG 200


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 308/561 (54%), Gaps = 54/561 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++   +  H   +  G +T+ +  N L+ +Y        A  +F+ M  R  +SW+ M+
Sbjct: 70  RSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMI 129

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            G++   + +   + F    R G Q+  +TL   + AC  +  I+  + +H I +K  LD
Sbjct: 130 AGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALD 189

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---------------------------- 222
              FV  A +D+YAKC +I DA  +F+ MP +                            
Sbjct: 190 SSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQST 249

Query: 223 -----DLVTWTV---------------------MIGANKFLLDVILGTAVIDMYAKCGSI 256
                 L  +TV                     +I  + F  ++ + T+++D+YAKCG I
Sbjct: 250 QREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQI 309

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + + E+F  M +KNV+ W+AMIA++  H    +A+ LF  M    + PN +T++S+L AC
Sbjct: 310 EKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSAC 369

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SHTGLVEEG   F+ +  D    P+V HY+CMVD+LGR+G+ DEA KL++ M  E    +
Sbjct: 370 SHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASM 429

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WG+LLG+ RIHKN+ LA +AA+ L   +P+N G++VLLSNVYA +G W++V   R  +  
Sbjct: 430 WGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRD 489

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
              KK  G +WIE + KIH F  G+  HP   ++Y  L  +  ++    +  +T  +LHD
Sbjct: 490 SGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHD 549

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V  + K   L  HSEKLA AFGLI+ P    I I KNLR+CGDCHSF+K VS IT R +I
Sbjct: 550 VHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVI 609

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF+ G+CSC D+W
Sbjct: 610 VRDINRFHHFKDGSCSCGDFW 630



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 125/290 (43%), Gaps = 72/290 (24%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           +D +TL  +++ C  R+ +++G+  H + +  GL  D   C  L+++Y KC   D AR++
Sbjct: 54  IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRV 113

Query: 216 FDQMPTRDLVTWTVMIG------------------------------------------- 232
           FD M  R +++W  MI                                            
Sbjct: 114 FDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAI 173

Query: 233 ---------ANKFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                    A K  LD    +GTA +D+YAKC  I  A  +F+ M +K  ++WS++ A +
Sbjct: 174 IECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGF 233

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             +G  ++ L LF       +     T  S+L  C+   L+ EG ++ + +         
Sbjct: 234 VQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVI--------- 284

Query: 342 VKH--------YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           VKH         T +VD+  + G+++++ ++   M  EK+  LW A++ +
Sbjct: 285 VKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADME-EKNVVLWNAMIAS 333



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 61  KFFISSLLS-CRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F +SS+LS C +   I +  QVHA IV  G   NL VA  L+ +YA    +  ++ +F 
Sbjct: 258 EFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFA 317

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M+E++ V W+ M+  FS+ A        F +  + G+  +  T   ++ AC     +  
Sbjct: 318 DMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEE 377

Query: 177 GRLIHDIVLK---SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIG 232
           GR   +++L    +  ++  + C  +VD+  +    D+A +L D+MP     + W  ++G
Sbjct: 378 GRHYFNLLLSDRTAEPNVLHYSC--MVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLG 435

Query: 233 ANKFLLDVILG 243
           +++   ++ L 
Sbjct: 436 SSRIHKNIRLA 446


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/531 (38%), Positives = 310/531 (58%), Gaps = 12/531 (2%)

Query: 47  QMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           +MG + +   SV     + +    +++   R+VH  +V  G   N+ V++ L+ +YA   
Sbjct: 169 KMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCL 228

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
           ++  A  +F+ M  RD+VSW+V++  +    +       F   +  G+ L+  +   VI 
Sbjct: 229 SIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIG 288

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
            C           +   +  SG   +Q    +++      + +   +Q+   +       
Sbjct: 289 GCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYI----FRH 344

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           W        F  D+   TA++ MYAKCG ++ +R +F  M +++ +SW+ MI A   HG 
Sbjct: 345 W--------FFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGN 396

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           G++AL LF  M+ S V PN +TF  +L  CSH+ LV+EGL +F SM  D +V PD  H++
Sbjct: 397 GEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHS 456

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           CMVD+L RAGRL+EA + I+ M +E   G WGALLG CR++KNV+L  +AA  L E +  
Sbjct: 457 CMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESD 516

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           NPG+YVLLSN+  +A  W + ++ R LM  R + K PG +WI+V N++H F VGD ++ Q
Sbjct: 517 NPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQ 576

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
           S+EIYR L  + EK+ +AGY+P+T+F L DVD+E K   L +HSEKLA+AFG++     +
Sbjct: 577 SDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGES 636

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IR+ KNLR+CGDCH+ IK ++ I    IIVRD+ RFHHF  G CSC+D+W
Sbjct: 637 SIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 166/338 (49%), Gaps = 22/338 (6%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S R++   ++VH   +  G  +++++ N L+ +Y   +    A  +F GM  RD +SW+ 
Sbjct: 90  SLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTS 149

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M   +            FR+    G + +S T+  ++ AC D KD+  GR +H  V+++G
Sbjct: 150 MASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNG 209

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248
           +  + FV +ALV+MYA C  I  A+ +FD M  RD V+W V+I A               
Sbjct: 210 MGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITA--------------- 254

Query: 249 MYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            Y      +    +F RM  +    N  SW+A+I     +G+ +KAL++   M +S   P
Sbjct: 255 -YFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKP 313

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N+IT  S+L AC++   +  G ++   ++  +  + D+   T +V +  + G L E  + 
Sbjct: 314 NQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ-DLTTTTALVFMYAKCGDL-ELSRR 371

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           + SM  ++D   W  ++ A  +H N + A +  + +++
Sbjct: 372 VFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVD 409



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 135/294 (45%), Gaps = 55/294 (18%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI-RC 152
           +A K + +Y+    L  A  LF+ + + D  +W++++   +K    +   + + +F  + 
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
            ++ D   L  V +AC   +D++  + +H+  ++ G   D  +  AL+DMY KC+  + A
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGA 132

Query: 213 RQLFDQMPTRDLVTWTVM-------------IGA-----------NKFLLDVIL------ 242
           R +F+ MP RD+++WT M             +GA           N   +  IL      
Sbjct: 133 RLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDL 192

Query: 243 ------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                                    +A+++MYA C SI  A+ +FD M +++ +SW+ +I
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLI 252

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
            AY  + + +K L +F  M+S  V  N  ++ +++  C   G  E+ L + S M
Sbjct: 253 TAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRM 306



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSS 300
           L    I +Y+  G +  AR +FD++ Q ++ +W+ +I+A   HG+  +A+  +      +
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKN 72

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+++  +S+  AC+    V    R+       F    DV     ++D+ G+  R  E
Sbjct: 73  CVEPDKLLLLSVAKACASLRDVMNAKRVHEDAI-RFGFCSDVLLGNALIDMYGKC-RCSE 130

Query: 361 ALKLI 365
             +L+
Sbjct: 131 GARLV 135


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/519 (40%), Positives = 297/519 (57%), Gaps = 51/519 (9%)

Query: 63  FISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F ++L +C   R ++  R VHAQ+V      + +V N LL +Y   +   +   +F+ M 
Sbjct: 33  FSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMP 92

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+  SW+ ++ GF K        + FR   R GM     TL  ++  C     ++ G+ 
Sbjct: 93  ERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTALLSGKE 152

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           IH  ++KS                        AR+     P                  D
Sbjct: 153 IHAQIVKS------------------------ARR-----P------------------D 165

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V++  +++DMY KCG +D  R +FD MR K++ SW+ M+  Y  +G  + A+DLF  M S
Sbjct: 166 VLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMAS 225

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             + P+ +TF++LL  CSH GL E+G +LF  M  DF V P ++HY C+VD+LGRAGR+D
Sbjct: 226 CGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRID 285

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
            AL ++++M ++    +WG+LL +CR+H  V LAE  A  L E +P NPG+YV+LSN+YA
Sbjct: 286 AALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYA 345

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS-THPQSEEIYRMLVTLS 478
           NAG W  V  +R++M  RR++K  G +WI+V+NKIH F  G       S+E  ++   L 
Sbjct: 346 NAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLR 405

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E +E  GYIP+T+  LHDV+EE K   +  HSE+LA  F LI T  G  IRI KNLRVC 
Sbjct: 406 EAMEEFGYIPNTDVVLHDVNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCV 465

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHS+IK VS +T RVI++RD NRFHHF+ GACSC DYW
Sbjct: 466 DCHSWIKIVSRVTGRVIVLRDTNRFHHFKEGACSCNDYW 504


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 324/572 (56%), Gaps = 61/572 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S+ +  R+I  +++V   ++  G   +L V N++L+++     + DA  LF+ M E+D
Sbjct: 124 LVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKD 183

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD---SYTLPFVIRACRDRKDIVMGRL 179
             SW  MVGG     +F    E FR F+    + +   S T   +IRA      + +G+ 
Sbjct: 184 VASWMTMVGGLVDTGNFS---EAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQ 240

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP------------------- 220
           IH   LK G+  D FV  AL+DMY+KC  I+DA  +FDQMP                   
Sbjct: 241 IHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGY 300

Query: 221 ----------------TRDLVTWTVMIGA-------------------NKFLLDVILGTA 245
                           T D  T +++I                     + F  D++  TA
Sbjct: 301 SEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTA 360

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++D Y+K G ++ AR +F+RMR KNVISW+A+IA YG HGQG++A+++F  ML   V P 
Sbjct: 361 LVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPT 420

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TF+++L ACS++GL + G  +F SM  D  V+P   HY CM++LLGR   LDEA  LI
Sbjct: 421 HVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALI 480

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            +   +    +W ALL ACR+HKN++L ++AA+ L   +P+   +Y++L N+Y ++G+ +
Sbjct: 481 RTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLK 540

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           + A I   + ++ L+ +P  +W+EV+ + + F  GD +H Q++EIY+ +  L  ++   G
Sbjct: 541 EAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHG 600

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y  +    L DVDEE +    Y HSEKLAIAFGLI TP  T ++I +  RVCGDCHS IK
Sbjct: 601 YAEENETLLPDVDEEEQRILKY-HSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIK 659

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            ++ +T R I+VRDA+RFHHF  G+CSC DYW
Sbjct: 660 LIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 138/323 (42%), Gaps = 61/323 (18%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G  + + T   ++ AC   + I   + + + ++ SG + D +V   ++ M+ KC ++ DA
Sbjct: 113 GYGVGASTYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDA 172

Query: 213 RQLFDQMPTRDLVTWTVMIGA-------------------------NKFLLDVILGTAVI 247
           R+LFD+MP +D+ +W  M+G                          ++    +I  +A +
Sbjct: 173 RKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGL 232

Query: 248 --------------------DMYAKC---------GSIDSAREIFDRMRQKNVISWSAMI 278
                               D +  C         GSI+ A  +FD+M +K  + W+++I
Sbjct: 233 GLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSII 292

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFA 337
           A+Y  HG  ++AL L+  M  S    +  T   ++  C+    +E   +  +++    FA
Sbjct: 293 ASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFA 352

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAEMA 396
              D+   T +VD   + GR+++A  +   M   K+   W AL+     H +  +  EM 
Sbjct: 353 T--DIVANTALVDFYSKWGRMEDARHVFNRMR-HKNVISWNALIAGYGNHGQGQEAVEMF 409

Query: 397 AKSLLERQPQNPGHYVLLSNVYA 419
            + L  ++   P H   L+ + A
Sbjct: 410 EQML--QEGVTPTHVTFLAVLSA 430


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/651 (35%), Positives = 339/651 (52%), Gaps = 130/651 (19%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYA--- 103
           P  QFT         + L SC  +  +   R+VH+ +V  G  + + VAN LL +YA   
Sbjct: 142 PPTQFT-------LTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSG 194

Query: 104 ---------------------------LHKALTD-AHALFNGMKERDSVSWSVMVGGFSK 135
                                      +   L D A   F  M ERD VSW+ M+ G+++
Sbjct: 195 DPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQ 254

Query: 136 VADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD---- 190
                   + F + +     + D +TL   + AC + +++ +G+ IH  ++++  D    
Sbjct: 255 HGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGA 314

Query: 191 -----------------------------IDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
                                        +D     AL+D Y K   I+ AR++FD +  
Sbjct: 315 VGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRV 374

Query: 222 RDLVTWT-VMIG-----------------------ANKFLL------------------- 238
           RD+V WT +++G                        N + L                   
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQI 434

Query: 239 -----------DVILGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQ 286
                       V +  A+I MYAK GSI+ AR +F+ +  +++ I+W++MI A   HG 
Sbjct: 435 HASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGL 494

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           G++AL LF  ML + + P+ IT+V +L AC+H GLVE+G   ++ M +   + P   HY 
Sbjct: 495 GEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYA 554

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           CM+DL GRAG L EA   IE+M +E D   WG+LL +C++HKNV+LAE+AA+ LL  +P+
Sbjct: 555 CMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPE 614

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           N G Y  L+NVY+  G+W++ A IR  M  + +KK  G++W++++NK+H F V D  HPQ
Sbjct: 615 NSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQ 674

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
            + IY M+  + ++++  G++PDT   LHD++EE+K   L  HSEKLAIAFGLI TPE T
Sbjct: 675 RDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENT 734

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +RIMKNLRVC DCHS IK +S +  R IIVRDA RFHHF+ G CSCRDYW
Sbjct: 735 TLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 196/434 (45%), Gaps = 85/434 (19%)

Query: 46  MQMGPDCQFTRSVDP-KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL----- 99
           M+       T   DP   F+   L  ++ F  + +HA+I+  G    + + N L+     
Sbjct: 1   METSSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAK 60

Query: 100 --YIYALHKA------------------------LTDAHALFNGMKERDSVSWSVMVGGF 133
             +IY  H+                         L +AH +F  M E DSVSW+ M+ G+
Sbjct: 61  TGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGY 120

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           +++  F N    FRE +   +    +TL  V+ +C   + + +GR +H  V+K GL    
Sbjct: 121 NQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYI 180

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
            V  +L++MYAK      A+ +FD+M  +   +W  MI +                + + 
Sbjct: 181 SVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISS----------------HMQS 224

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP-MMLSSRVLPNRITFVSL 312
           G +D A+  F++M +++V+SW+AMI+ Y  HG  ++ALD+F  M++ S   P++ T  S 
Sbjct: 225 GLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASA 284

Query: 313 LYACSHTGLVEEGLRLFSSM----WDDFAV----------------------------RP 340
           L AC++   ++ G ++ + +    +D F                                
Sbjct: 285 LSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNL 344

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKS 399
           DV  +T ++D   + G ++ A ++ +S+ V +D   W A++ G  +   N D  E+  +S
Sbjct: 345 DVIAFTALLDGYVKLGDINPARRIFDSLRV-RDVVAWTAMIVGYVQNGFNQDAMEL-FRS 402

Query: 400 LLERQPQNPGHYVL 413
           +++  P+ P +Y L
Sbjct: 403 MIKEGPK-PNNYTL 415


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 324/578 (56%), Gaps = 62/578 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   + + L  C  + ++++   VH  ++      +L++ N LL++YA   +L  A  LF
Sbjct: 73  DRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLF 132

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD VSW+ M+ G+++     +    F   +  G + + +TL  +++ C       
Sbjct: 133 DEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYN 192

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI-------------------------- 209
            GR IH    K G   + FV ++LVDMYA+C  +                          
Sbjct: 193 CGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYA 252

Query: 210 -----DDARQLFDQM------PTRDLVTWTVMIGA---------NKFL----------LD 239
                ++A  LF +M      PT    T++ ++ +          K+L          L 
Sbjct: 253 RKGEGEEALALFVRMQREGYRPTE--FTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLV 310

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
             +G  ++ MYAK GSI  A ++FD++ + +V+S ++M+  Y  HG GK+A   F  M+ 
Sbjct: 311 GYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIR 370

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             + PN ITF+S+L ACSH  L++EG   F  M   + + P V HY  +VDLLGRAG LD
Sbjct: 371 FGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLD 429

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +A   IE M +E    +WGALLGA ++HKN ++   AA+ + E  P  PG + LL+N+YA
Sbjct: 430 QAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYA 489

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
           +AGRW+DVAK+R +M    +KK P  +W+EVEN +H F   D  HPQ E+I++M   L++
Sbjct: 490 SAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQ 549

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           K++  GY+PDT+  L  VD++ K  NL  HSEKLA++F L+ TP G+ IRIMKN+RVCGD
Sbjct: 550 KIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGD 609

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CHS IK+VS + +R IIVRD NRFHHF  G CSC DYW
Sbjct: 610 CHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 101/220 (45%), Gaps = 5/220 (2%)

Query: 26  AAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVA 85
           A  A +  G E   +  R+  +     +FT S      +SS  S   + Q + +HA ++ 
Sbjct: 249 AGYARKGEGEEALALFVRMQREGYRPTEFTYSA----LLSSCSSMGCLEQGKWLHAHLMK 304

Query: 86  GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFET 145
                   V N LL++YA   ++ DA  +F+ + + D VS + M+ G+++        + 
Sbjct: 305 SSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQ 364

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           F E IR G++ +  T   V+ AC   + +  G+    ++ K  ++      A +VD+  +
Sbjct: 365 FDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGR 424

Query: 206 CKVIDDARQLFDQMPTRDLVT-WTVMIGANKFLLDVILGT 244
             ++D A+   ++MP    V  W  ++GA+K   +  +G 
Sbjct: 425 AGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGA 464


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 318/604 (52%), Gaps = 85/604 (14%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           +P  F     +C+ +  +RQ+HA     G   +   AN LL  YA       A  LF  +
Sbjct: 44  EPGLFSHIFRACQALPLLRQLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERI 103

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFI---------------------------- 150
            +R+ +SW++++GG+ K  D     + F E                              
Sbjct: 104 PKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFF 163

Query: 151 ---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
              R GMQ D Y L  + R C   +D+V GR +H  V++SGLD D  V ++L  MY +C 
Sbjct: 164 AMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCG 223

Query: 208 VIDDARQLFDQMPTRDLVTWTVMI----------GANKFL-------------------- 237
            + D       +P+ ++V+    I          GA +F                     
Sbjct: 224 FLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVT 283

Query: 238 ----------------LDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                           L +  G        T+++ MY++CG +  +  +       +++ 
Sbjct: 284 SCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVL 343

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
            SAMI+AYG+HG G+KA+ LF  M+++   PN +TF++LLYACSH+GL +EG+  F  M 
Sbjct: 344 CSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT 403

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             + ++P VKHYTC+VDLLGR+G L+EA  LI SM V+ D  +W  LL AC+  K  D+A
Sbjct: 404 KTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMA 463

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E  A+ ++E  P +   YVLLSN+ A + RW+DV+K+R+ M  + ++K PG +W+E++ +
Sbjct: 464 ERIAERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQ 523

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           IHQF  GD +H +  EI   L  +  ++   GY PD +   HD+++E K  +L  HSEKL
Sbjct: 524 IHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKL 583

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAF  ++ PEG  IR+MKNLRVC DCH  IK +S +  R I+VRD +RFHHF+ G CSC
Sbjct: 584 AIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSC 643

Query: 574 RDYW 577
            DYW
Sbjct: 644 GDYW 647



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 19/174 (10%)

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           E      R G+  +      + RAC   + + + R +H     SG   D+F    L+  Y
Sbjct: 31  EALHRRFREGLWSEPGLFSHIFRAC---QALPLLRQLHAFAATSGAAADRFTANHLLLAY 87

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
           A       AR LF+++P R++++W ++IG                 Y K G +++AR++F
Sbjct: 88  ADLGDFPTARGLFERIPKRNVMSWNILIGG----------------YVKNGDLETARKLF 131

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           D M  +NV +W+AM+A     G  +++L  F  M    + P+     SL   C+
Sbjct: 132 DEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCA 185


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 318/563 (56%), Gaps = 58/563 (10%)

Query: 73  IFQIRQVHAQIVAGGTLTN---LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           +FQ   +HA  +      N   +++   LL +YA  K L  A  +F+GM  R+ V+WS +
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 130 VGGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +GGF         F  F++ +  G+  L + ++   +R C    D+ MG  +H ++ KSG
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------------------------- 223
           +  D     +L+ MYAK  +I++A   FD++  +D                         
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 224 ----------LVTWTVMIGANKFL-------------------LDVILGTAVIDMYAKCG 254
                     + T   +I A   L                   L+  +  ++IDMYAKCG
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCG 457

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ID +R++FD+M  ++V+SW+ MIA YG HG GK+A  LF  M +    P+ +TF+ L+ 
Sbjct: 458 KIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIA 517

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH+GLV EG   F +M   + + P ++HY CMVDLL R G LDEA + I+SM ++ D 
Sbjct: 518 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADV 577

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +WGALLGACRIHKN+DL +  ++ + +  P+  G++VLLSN+++ AGR+ + A++R + 
Sbjct: 578 RVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQ 637

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             +  KK PG++WIE+   +H F  GD +HP S +IY  L  +   ++  GY  DT+F L
Sbjct: 638 KVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVL 697

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            D++EE K   L  HSEKLAIAFG+++  E   I + KNLRVCGDCH+ IK+++ +  R 
Sbjct: 698 QDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRT 757

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRD NRFHHF+ G CSC ++W
Sbjct: 758 IIVRDTNRFHHFKNGQCSCGNFW 780



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 162/371 (43%), Gaps = 63/371 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +HA   A G  T+L V+  L+ +Y        A  +F  M  RD V+W+ M+ G++  
Sbjct: 120 RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANH 179

Query: 137 ADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ-- 193
             + +      +     G++ ++ TL  ++        +  G  IH   L++ L+ ++  
Sbjct: 180 GMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQ 239

Query: 194 -FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKF----- 236
             +  AL+DMYAKCK +  A ++F  MP R+ VTW+ +IG            N F     
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 237 --------------------LLDVILGT-------------------AVIDMYAKCGSID 257
                               L D+ +GT                   +++ MYAK G I+
Sbjct: 300 EGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN 359

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A   FD +  K+ IS+ A+++    +G+ ++A  +F  M +  + P+  T VSL+ ACS
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACS 419

Query: 318 HTGLVEEG-LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           H   ++ G     S +    A+   +     ++D+  + G++D + ++ + M   +D   
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKIDLSRQVFDKMPA-RDVVS 476

Query: 377 WGALLGACRIH 387
           W  ++    IH
Sbjct: 477 WNTMIAGYGIH 487



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 61/284 (21%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  +F+ +   D+ +++ ++  +S +  F    + +R  +R  +  + YT PFV++A
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C    D+  GR IH     +GL  D FV  AL+D+Y +C     AR +F +MP RD+V W
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
             M                                               +A Y  HG  
Sbjct: 170 NAM-----------------------------------------------LAGYANHGMY 182

Query: 288 KKAL-DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY- 345
             A+  L  M     + PN  T VSLL   +  G + +G  + +     + +R  ++   
Sbjct: 183 HHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA-----YCLRACLEQNE 237

Query: 346 ------TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
                 T ++D+  +  +L  A ++   M V  D   W AL+G 
Sbjct: 238 EQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV-TWSALIGG 280



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  AR++FDR+   +  +++A+I AY + G    A+DL+  ML  RV PN+ TF  +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACS    +  G R   +      +  D+   T ++DL  R  R   A  +   M + +D
Sbjct: 108 KACSALVDLRAG-RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM-RD 165

Query: 374 EGLWGALLGACRIH 387
              W A+L     H
Sbjct: 166 VVAWNAMLAGYANH 179


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 318/563 (56%), Gaps = 58/563 (10%)

Query: 73  IFQIRQVHAQIVAGGTLTN---LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           +FQ   +HA  +      N   +++   LL +YA  K L  A  +F+GM  R+ V+WS +
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 130 VGGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +GGF         F  F++ +  G+  L + ++   +R C    D+ MG  +H ++ KSG
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------------------------- 223
           +  D     +L+ MYAK  +I++A   FD++  +D                         
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 224 ----------LVTWTVMIGANKFL-------------------LDVILGTAVIDMYAKCG 254
                     + T   +I A   L                   L+  +  ++IDMYAKCG
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCG 457

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ID +R++FD+M  ++V+SW+ MIA YG HG GK+A  LF  M +    P+ +TF+ L+ 
Sbjct: 458 KIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIA 517

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH+GLV EG   F +M   + + P ++HY CMVDLL R G LDEA + I+SM ++ D 
Sbjct: 518 ACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADV 577

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +WGALLGACRIHKN+DL +  ++ + +  P+  G++VLLSN+++ AGR+ + A++R + 
Sbjct: 578 RVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQ 637

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             +  KK PG++WIE+   +H F  GD +HP S +IY  L  +   ++  GY  DT+F L
Sbjct: 638 KVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVL 697

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            D++EE K   L  HSEKLAIAFG+++  E   I + KNLRVCGDCH+ IK+++ +  R 
Sbjct: 698 QDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRT 757

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRD NRFHHF+ G CSC ++W
Sbjct: 758 IIVRDTNRFHHFKNGQCSCGNFW 780



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 162/371 (43%), Gaps = 63/371 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +HA   A G  T+L V+  L+ +Y        A  +F  M  RD V+W+ M+ G++  
Sbjct: 120 RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANH 179

Query: 137 ADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ-- 193
             + +      +     G++ ++ TL  ++        +  G  IH   L++ L+ ++  
Sbjct: 180 GMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQ 239

Query: 194 -FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKF----- 236
             +  AL+DMYAKCK +  A ++F  MP R+ VTW+ +IG            N F     
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLV 299

Query: 237 --------------------LLDVILGT-------------------AVIDMYAKCGSID 257
                               L D+ +GT                   +++ MYAK G I+
Sbjct: 300 EGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLIN 359

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A   FD +  K+ IS+ A+++    +G+ ++A  +F  M +  + P+  T VSL+ ACS
Sbjct: 360 EATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACS 419

Query: 318 HTGLVEEG-LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           H   ++ G     S +    A+   +     ++D+  + G++D + ++ + M   +D   
Sbjct: 420 HLAALQHGKCSHGSVIIRGLALETSI--CNSLIDMYAKCGKIDLSRQVFDKMPA-RDVVS 476

Query: 377 WGALLGACRIH 387
           W  ++    IH
Sbjct: 477 WNTMIAGYGIH 487



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 114/284 (40%), Gaps = 61/284 (21%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  +F+ +   D+ +++ ++  +S +  F    + +R  +R  +  + YT PFV++A
Sbjct: 50  LALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVLKA 109

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C    D+  GR IH     +GL  D FV  AL+D+Y +C     AR +F +MP RD+V W
Sbjct: 110 CSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAW 169

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
             M                                               +A Y  HG  
Sbjct: 170 NAM-----------------------------------------------LAGYANHGMY 182

Query: 288 KKAL-DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY- 345
             A+  L  M     + PN  T VSLL   +  G + +G  + +     + +R  ++   
Sbjct: 183 HHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA-----YCLRACLEQNE 237

Query: 346 ------TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
                 T ++D+  +  +L  A ++   M V  D   W AL+G 
Sbjct: 238 EQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDV-TWSALIGG 280



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 2/134 (1%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  AR++FDR+   +  +++A+I AY + G    A+DL+  ML  RV PN+ TF  +L
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNKYTFPFVL 107

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACS    +  G R   +      +  D+   T ++DL  R  R   A  +   M + +D
Sbjct: 108 KACSALVDLRAG-RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPM-RD 165

Query: 374 EGLWGALLGACRIH 387
              W A+L     H
Sbjct: 166 VVAWNAMLAGYANH 179


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/581 (38%), Positives = 311/581 (53%), Gaps = 59/581 (10%)

Query: 56   RSVDPKFFI--SSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
              ++P  F   S L +C ++  +    Q+H Q++  G   N+ V++ L+ +YA    L  
Sbjct: 467  EGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDH 526

Query: 111  AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
            A  +F  +KE+D VSW+ M+ G+++   F      F+E    G+  D+      I AC  
Sbjct: 527  ALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAG 586

Query: 171  RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR----------------- 213
             + +  G+ IH     SG   D  V  ALV +YA+C  + DA                  
Sbjct: 587  IQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSL 646

Query: 214  --------------QLFDQMPT--RDLVTWT---------------------VMIGANKF 236
                           LF QM    +++ ++T                      MI     
Sbjct: 647  ISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGH 706

Query: 237  LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
              +  +   +I +YAKCG+ID A   F  M +KN ISW+AM+  Y  HG G KAL LF  
Sbjct: 707  DSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFED 766

Query: 297  MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
            M    VLPN +TFV +L ACSH GLV+EG++ F SM +   + P  +HY C+VDLLGR+G
Sbjct: 767  MKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSG 826

Query: 357  RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
             L  A + +E M ++ D  +   LL AC +HKN+D+ E AA  LLE +P++   YVLLSN
Sbjct: 827  LLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSN 886

Query: 417  VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
            +YA  G+W    + R +M  R +KK PG +WIEV N +H F  GD  HP  ++IY  L  
Sbjct: 887  MYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRD 946

Query: 477  LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
            L+E     GYIP TN  L+D +   K      HSEKLAIAFGL++    T I + KNLRV
Sbjct: 947  LNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRV 1006

Query: 537  CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            CGDCH++IK+VS I+ RVI+VRD+ RFHHF+GG CSC+DYW
Sbjct: 1007 CGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 161/367 (43%), Gaps = 56/367 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           + ++HA+ +  G   +L V N L+ +Y  +  L  A  +F+G+++RDSVSW  M+ G S+
Sbjct: 189 VEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQ 248

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                     F +    G+    Y    V+ AC   +   +G  +H +VLK G  ++ +V
Sbjct: 249 SGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYV 308

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------NKFLLD-- 239
           C ALV +Y++      A Q+F+ M  RD V++  +I                 K  LD  
Sbjct: 309 CNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCL 368

Query: 240 --------------------------------------VILGTAVIDMYAKCGSIDSARE 261
                                                 +IL  A++D+Y KC  I +A E
Sbjct: 369 KPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHE 428

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F     +NV+ W+ M+ AYG      ++  +F  M    + PN+ T+ S+L  CS    
Sbjct: 429 FFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA 488

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+ G ++ + +      + +V   + ++D+  + G+LD ALK+   +  EKD   W A++
Sbjct: 489 VDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMI 546

Query: 382 GACRIHK 388
                H+
Sbjct: 547 AGYAQHE 553



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 169/386 (43%), Gaps = 69/386 (17%)

Query: 60  PKFFISSLLSCRNI--FQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           P  F S L +C  +  +++  Q+H  ++  G      V N L+ +Y+       A  +FN
Sbjct: 271 PYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFN 330

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M +RD VS++ ++ G S+        E F++     ++ D  T+  ++ AC     +++
Sbjct: 331 AMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLV 390

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G+  H   +K+G+  D  +  AL+D+Y KC  I  A + F    T ++V W VM+ A   
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 234 ---------------------NKFL------------------------------LDVIL 242
                                N+F                                +V +
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            + +IDMYAK G +D A +IF R+++K+V+SW+AMIA Y  H +  +AL+LF  M    +
Sbjct: 511 SSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGI 570

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRL-----FSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
             + I F S + AC+    + +G ++      S   DD +V         +V L  R G+
Sbjct: 571 HSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVG------NALVSLYARCGK 624

Query: 358 LDEALKLIESMSVEKDEGLWGALLGA 383
           + +A    + +   KD   W +L+  
Sbjct: 625 VRDAYFAFDKI-FSKDNISWNSLISG 649



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 15/155 (9%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  +V+L   ++D+Y   G +D A  +FD M  + +  W+ ++  +       + L LF 
Sbjct: 99  FCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFR 158

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGL----VEE-GLRLFSSMWDD--FAVRPDVKHYTCM 348
            ML  +V P+  T+  +L  C    +    VE+   R  +  +++  F   P       +
Sbjct: 159 RMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNP-------L 211

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +DL  + G L+ A K+ + +  ++D   W A+L  
Sbjct: 212 IDLYFKNGFLNSAKKVFDGLQ-KRDSVSWVAMLSG 245



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 86/210 (40%), Gaps = 40/210 (19%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ +S T  +++  C        G  +H  +LK G   +  +C  L+D+Y     +D A
Sbjct: 63  GVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGA 122

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK-------------------C 253
             +FD+MP R L  W  ++  ++F+   + G  V+ ++ +                   C
Sbjct: 123 VTVFDEMPVRPLSCWNKVL--HRFVAGKMAGR-VLGLFRRMLQEKVKPDERTYAGVLRGC 179

Query: 254 GSIDSAREIFDRMRQKNVISW--------SAMIAAY---GYHGQGKKALDLFPMMLSSRV 302
           G  D      +++  + +           + +I  Y   G+    KK  D     L  R 
Sbjct: 180 GGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFD----GLQKR- 234

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
             + +++V++L   S +G  EE + LF  M
Sbjct: 235 --DSVSWVAMLSGLSQSGCEEEAVLLFCQM 262


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/493 (42%), Positives = 291/493 (59%), Gaps = 21/493 (4%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS-WSVMVGGFSKVADFINCFET 145
           G   + +  N ++  Y     +  A  LF GM +R  +S W+ M+ GFS+        E 
Sbjct: 199 GGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCG----MVEV 254

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            REF     + D  +   +I         +    I   + K  +   +FV  +++   A 
Sbjct: 255 AREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACAN 314

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDR 265
              +D  R +                  N   LD +LGT+++DMYAKCG ID A E+F++
Sbjct: 315 LGALDQGRWIHTYAKR------------NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEK 362

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  K V SW+AMI     HG+ + A+DLF  M    + PN ITFV +L AC+H GLV++G
Sbjct: 363 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKG 419

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           L +F+SM  ++ V P ++HY C+VDLLGRAG L EA K++ S+  E    +WGALLGACR
Sbjct: 420 LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 479

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
            H NV+L E   K LLE +PQN G Y LLSN+YA AGRW++V ++R LM  R +K  PG 
Sbjct: 480 KHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGT 539

Query: 446 TWIEV-ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           + I++   ++H+F +GD +HPQ ++IY+ML  + E+L++ GY PD +  L D+DEE K  
Sbjct: 540 SIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKET 599

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            ++ HSEKLAI FGLI T  GT IRI+KNLRVC DCHS  K +S +  R IIVRD  R+H
Sbjct: 600 AVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYH 659

Query: 565 HFEGGACSCRDYW 577
           HF  GACSC+D+W
Sbjct: 660 HFRNGACSCKDFW 672



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 183/390 (46%), Gaps = 30/390 (7%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA-----LHKALTDAHALFNGMKERDSVSW 126
           ++  ++Q HA I+  G L +  +A  L+  YA      + +   +  +F+ +++ +   W
Sbjct: 46  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 105

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + M+    +  +       + E +    + + YT P V++AC D   +  G  +H  ++K
Sbjct: 106 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 165

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI------GANKFLLD 239
            GL  D  + ++ + MYA    + +AR++ D      D V W  MI      G  +   +
Sbjct: 166 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARE 225

Query: 240 VILG----------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           +  G           A+I  +++CG ++ ARE FD M++++ ISWSAMI  Y   G   +
Sbjct: 226 LFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFME 285

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL++F  M   ++ P +    S+L AC++ G +++G R   +     +++ D    T +V
Sbjct: 286 ALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQG-RWIHTYAKRNSIQLDGVLGTSLV 344

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           D+  + GR+D A ++ E MS  K+   W A++G   +H   +     A  L  +   NP 
Sbjct: 345 DMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAE----DAIDLFSKMDINPN 399

Query: 410 H--YVLLSNVYANAGRWQDVAKIRDLMTRR 437
              +V + N  A+ G  Q    I + M + 
Sbjct: 400 EITFVGVLNACAHGGLVQKGLTIFNSMRKE 429


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/610 (34%), Positives = 331/610 (54%), Gaps = 96/610 (15%)

Query: 62  FFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F +++++ C     ++   ++VH  ++  G   ++++ N +L +YA       A  +F  
Sbjct: 113 FVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGA 172

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFRE---------------FIRCGMQLD----- 157
           M ERD+VSW++ +G   +  D +   + F E                +R G   D     
Sbjct: 173 MAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHL 232

Query: 158 -------------SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
                        +Y+  FV+       D  +GR +H  VL + L+ D FV ++L+DMY 
Sbjct: 233 RRMAQAGVVFNHYTYSTAFVLAGMLLLPD--LGRQLHGRVLIAALEGDAFVRSSLMDMYC 290

Query: 205 KCKVIDDARQLFDQMP--TRDL-VTWTVMIG------------------------ANKFL 237
           KC +++ A  +FD     TRD+   W+ M+                         A++F 
Sbjct: 291 KCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFT 350

Query: 238 L------------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMR 267
           L                              D  L +A++DMYAKCG+++ AR IFDR  
Sbjct: 351 LTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRAC 410

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
            KN+  W++M+ +Y  HGQG+ A++LF  M + ++ PN IT V +L ACSH GLV EG  
Sbjct: 411 TKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGEL 470

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            F  M +++ + P ++HY C+VDL GR+G LD+A   IE  ++  +  +W  LL ACR+H
Sbjct: 471 YFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLH 530

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
           ++ + A++A++ L++ +  + G YV+LSN+YA   +W D  ++R  M  R+++K PG +W
Sbjct: 531 QHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSW 590

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           I ++N +H F  GD++HPQS EIY  L  L E+L+  GY   T+  +HDV++E +   L 
Sbjct: 591 IHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALK 650

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLAIAFG+I+TP GT +RI KNLRVC DCH  IK++S  T R I+VRD  RFHHF+
Sbjct: 651 FHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFK 710

Query: 568 GGACSCRDYW 577
             +CSC D+W
Sbjct: 711 DASCSCEDFW 720



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 22/265 (8%)

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL- 156
           +L  +   +   DA  +F+    R +  W++ + G ++   + +    F E +  G    
Sbjct: 51  VLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATP 110

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           +++ L  V+R C    D+  G+ +H  +L++G+ +D  +C A++DMYAKC   + AR++F
Sbjct: 111 NAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVF 170

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
             M  RD V+W + IGA                  + G I  + ++FD    ++  SW+ 
Sbjct: 171 GAMAERDAVSWNIAIGA----------------CIQSGDILGSMQLFDESPLRDTTSWNT 214

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR-----LFSS 331
           +I+     G    AL     M  + V+ N  T+ +         L + G +     L ++
Sbjct: 215 IISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAA 274

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAG 356
           +  D  VR  +    C   LL  A 
Sbjct: 275 LEGDAFVRSSLMDMYCKCGLLEAAA 299



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 55/153 (35%)

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
           A+++  + + +   DAR +FD+ PTR    WT+ I                         
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 234 --NKFL------------------------------LDVILGTAVIDMYAKCGSIDSARE 261
             N F+                              LDV+L  AV+DMYAKCG  + AR 
Sbjct: 109 TPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARR 168

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           +F  M +++ +SW+  I A    G    ++ LF
Sbjct: 169 VFGAMAERDAVSWNIAIGACIQSGDILGSMQLF 201


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/569 (37%), Positives = 317/569 (55%), Gaps = 58/569 (10%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           SL   R++ +  Q+HA I+  G  T  ++++ L+  Y+       +  +F+    + + +
Sbjct: 29  SLTFSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATT 88

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           WS ++  F++    +     FR  +R G+  D +  P   ++C     + + +++H   L
Sbjct: 89  WSSVISSFAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFAL 148

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------------- 231
           K+   +D FV ++++DMYAKC  I  A  +FD+MP R++V+W+ +I              
Sbjct: 149 KTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLR 208

Query: 232 ------------GANKFLLDVIL------------------------------GTAVIDM 249
                       G N F L  +L                               +++I +
Sbjct: 209 LFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISL 268

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRIT 308
           Y+KCG ++ A ++F+ +  +N+  W+AM+ A   H    K  +LF  M S   +  N IT
Sbjct: 269 YSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFIT 328

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +LYACSH GLVE+G   F  M  D+ + P  +HY+ MVDLLGRAG+L++A+KLIE M
Sbjct: 329 FLCVLYACSHAGLVEKGKYYFELM-KDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEM 387

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +E  E +WGALL  CR+H N  LA   A  + E    + G +V+LSN YA AGRW++ A
Sbjct: 388 PMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSGLHVMLSNAYAAAGRWEEAA 447

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           K R +M  R +KK  G +W+E  N+IH F+ GD +H +S EIY  L  L E+++ AGY+ 
Sbjct: 448 KARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVEIYDKLDELGEEMDKAGYVA 507

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           DT+F L +VD E K  ++  HSE+LAIAFG I  P G  IR+MKNLRVCGDCH+ IK +S
Sbjct: 508 DTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIRVMKNLRVCGDCHTAIKFIS 567

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
             T RVIIVRD NRFH FE G C+C DYW
Sbjct: 568 KCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 315/563 (55%), Gaps = 55/563 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I   LS R + +   +   +   G    + + N L+ +Y     L DAH LF+ M +R+
Sbjct: 19  LIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 78

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            +SW+ M+  +SK        E     +R G++ + YT   V+RAC    D+   R++H 
Sbjct: 79  VISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV---RMLHC 135

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDAR----------------------------- 213
            ++K GL+ D +V +AL+D++AK    +DA                              
Sbjct: 136 GIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV 195

Query: 214 --QLFDQMPTRDLV----TWTVMIGAN-----------------KFLLDVILGTAVIDMY 250
             +LF +M     +    T T ++ A                  K+  D+IL  A++DMY
Sbjct: 196 ALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMY 255

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            KCGS++ AR +F++M++++VI+WS MI+    +G  ++AL LF +M SS   PN IT V
Sbjct: 256 CKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIV 315

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +L+ACSH GL+E+G   F SM   + + P  +HY CM+DLLG+AG+LD+A+KL+  M  
Sbjct: 316 GVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMEC 375

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           E D   W  LLGACR+ +N+ LAE AAK ++   P++ G Y +LSN+YAN+ +W  V +I
Sbjct: 376 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDSVEEI 435

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M    +KK PG +WIEV  +IH F +GD +HPQ  E+ + L  L  +L   GY+P+T
Sbjct: 436 RKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGYVPET 495

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           NF L D++ E    +L  HSEKLA+AFGL+  P    IRI KNLR+CGDCH F K  S +
Sbjct: 496 NFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKLASKL 555

Query: 551 TRRVIIVRDANRFHHFEGGACSC 573
             R I++RD  R+HHF+ G CSC
Sbjct: 556 ENRNIVIRDPIRYHHFQDGKCSC 578


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/542 (38%), Positives = 311/542 (57%), Gaps = 60/542 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I    ++  YA  K L  A   F+ M ER  VSW+ M+ G+++          F E +
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMV 252

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G++ D  T   VI AC  R D  +   +   + +  + ++ FV  AL+DMYAK   +D
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLD 312

Query: 211 DARQLFDQMPTRDLVTWTV--------------------MIGANKFLLDVILGTAVID-- 248
            AR+LF+ MP R++VTW                      MI A K   D +   +VI   
Sbjct: 313 SARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372

Query: 249 ---------------------------------MYAKCGSIDSAREIFDRMRQKNVISWS 275
                                            MY++CGS++ A+ +F  M  ++V+S++
Sbjct: 373 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYN 432

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            +I+ +  HG G +A++L   M    + P+R+TF+ +L ACSH GL+EEG ++F S+ D 
Sbjct: 433 TLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD- 491

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
               P + HY CMVDLLGR G L++A + +E M +E   G++G+LL A RIHK V+L E+
Sbjct: 492 ----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGEL 547

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AA  L E +P N G+++LLSN+YA+AGRW+DV +IR+ M +  +KK  GW+W+E   K+H
Sbjct: 548 AANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLH 607

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           +F V D +H +S++IY++L+ L +K+  AGYI D +  L DV+EE K   + +HSEKLAI
Sbjct: 608 KFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAI 667

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
            + L+ +  G  IR++KNLRVC DCH+ IK +S +  RVIIVRD NRFH F  G CSC+D
Sbjct: 668 CYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKD 727

Query: 576 YW 577
           YW
Sbjct: 728 YW 729



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 174/366 (47%), Gaps = 25/366 (6%)

Query: 72  NIFQIRQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           N   +RQ+HAQI+       N  VA  + +   L       H LFN     +   ++ M+
Sbjct: 13  NFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSML 72

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             +S + D       + +   CG++ D++  P +I++         G   H  VLK G  
Sbjct: 73  RFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHG 127

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMP--TRDLVTWTVMI---------GANKFLLD 239
            D FV  A++DMYA+   I  AR++FD++P   R +  W  M+         G  ++L D
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 240 ------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                 VI  TA++  YAK   +++AR  FD M +++V+SW+AM++ Y  +G  ++AL L
Sbjct: 188 VMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRL 247

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M+++ + P+  T+V+++ ACS  G       L  ++     ++ +    T ++D+  
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK-RIQLNCFVRTALLDMYA 306

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           + G LD A KL  +M   ++   W +++     +    +A    K ++  +   P    +
Sbjct: 307 KFGDLDSARKLFNTMP-GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTM 365

Query: 414 LSNVYA 419
           +S + A
Sbjct: 366 VSVISA 371


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/570 (37%), Positives = 317/570 (55%), Gaps = 58/570 (10%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            D +F+ + L  C   + + Q R VHA I+      ++++ N LL +YA   +L +A  +
Sbjct: 58  ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV 117

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M +RD V+W+ ++ G+S+     +    F + +R G   + +TL  VI+A    +  
Sbjct: 118 FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 177

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H   +K G D +  V +AL+D+Y +  ++DDA+ +FD + +R+ V+W  +I   
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGH 237

Query: 232 ----GANKFL-----------------------------------------------LDV 240
               G  K L                                               L  
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 297

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
             G  ++DMYAK GSI  AR+IFDR+ +++V+SW++++ AY  HG GK+A+  F  M   
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + PN I+F+S+L ACSH+GL++EG   +  M  D  + P+  HY  +VDLLGRAG L+ 
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNR 416

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           AL+ IE M +E    +W ALL ACR+HKN +L   AA+ + E  P +PG +V+L N+YA+
Sbjct: 417 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 476

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
            GRW D A++R  M    +KK P  +W+E+EN IH F   D  HPQ EEI R    +  K
Sbjct: 477 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 536

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT+  +  VD++ +  NL  HSEK+A+AF L+ TP G+ I I KN+RVCGDC
Sbjct: 537 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 596

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           H+ IK  S +  R IIVRD NRFHHF+  +
Sbjct: 597 HTAIKLASKVVGREIIVRDTNRFHHFKDAS 626


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 312/555 (56%), Gaps = 57/555 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH Q+V  G  ++L V   L+ +YA    + DAH +F+ M  RD V W+ M+  + +   
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
            +     FR+    G   D  T   V  A     D  M   +H   + +G   D  V  +
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNS 273

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWT------------------------------ 228
           +V MYAKC  ++ AR +FD+M  R+ ++W                               
Sbjct: 274 IVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPN 333

Query: 229 -----VMIGANKFL-------------------LDVILGTAVIDMYAKCGSIDSAREIFD 264
                +M+ A  +L                   +D  L  A++DMY KCG +D+A E+F+
Sbjct: 334 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFN 393

Query: 265 --RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
              + +++V SW+ +I+ YG HG GK+AL+LF  M    V PN ITF S+L ACSH GL+
Sbjct: 394 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 453

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG + F+ M    +VRP++KHY CMVD+LGRAG L+EA +LI+ +     + +WGALL 
Sbjct: 454 DEGRKCFADM-TKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLL 512

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N +L E+AA +L + +P++ G+YVL+SN+YA + +W++V  +R  M  R LKK 
Sbjct: 513 ACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKP 572

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
             ++ IE   ++H F   D + P   E+YR + +L+ ++++ GY+PD +  LHDV+ E K
Sbjct: 573 AAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDK 632

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSEKLA+AFG++   +G  I++ KNLRVC DCH   K +S+I  R IIVRD NR
Sbjct: 633 EHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNR 692

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+GG CSC DYW
Sbjct: 693 FHHFQGGRCSCGDYW 707



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 180/391 (46%), Gaps = 67/391 (17%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGM- 118
           F+   L  C ++  ++ +H+ +   G L  T   +A +L+ +Y+    L  A  LF+   
Sbjct: 27  FYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLA-RLIILYSKLGDLHSARTLFDHRH 85

Query: 119 -------KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
                  +  +S   + M+  ++         + +    R G+ ++++T PFV++ C   
Sbjct: 86  HHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASE 145

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
              V G ++H  V+++G   D FV AALVDMYAKC  I DA ++FD+M  RD+V WT MI
Sbjct: 146 LGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMI 205

Query: 232 G-------------------ANKFLLDVI------------------------------- 241
                                  FL D I                               
Sbjct: 206 TLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFI 265

Query: 242 ----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
               +G +++ MYAKCG+++ AR +FDRM ++N ISW++M++ Y  +G+   AL LF  M
Sbjct: 266 GDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQM 325

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
            +S   PN +T + ++ ACS+ G    G +L + +     +  D      ++D+  + G 
Sbjct: 326 QASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISS-KMDIDTTLRNAIMDMYMKCGD 384

Query: 358 LDEALKLIESMSV-EKDEGLWGALLGACRIH 387
           LD A+++  +  + E+D   W  L+    +H
Sbjct: 385 LDTAVEMFNNCELGERDVSSWNVLISGYGVH 415



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 2/148 (1%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG--MKERDSVSWSVMVGGFS 134
           R++H  +++     +  + N ++ +Y     L  A  +FN   + ERD  SW+V++ G+ 
Sbjct: 354 RKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYG 413

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                    E F      G++ +  T   ++ AC     I  GR     + K  +  +  
Sbjct: 414 VHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMK 473

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR 222
             A +VDM  +   +++A +L  ++P+R
Sbjct: 474 HYACMVDMLGRAGFLNEAFRLIKKIPSR 501


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 313/568 (55%), Gaps = 57/568 (10%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C    QI    Q+H+  +  G  +++ V+  L+ +Y+ ++ L  A  +   +++RD 
Sbjct: 353 LRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDV 412

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+ G+ +         TF+E   CG+  D+  L     AC   K +  G  IH  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
           V  SG   D  +   LV++YA+C   ++A  LF ++  +D +TW  +I            
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQA 532

Query: 234 --------------NKF-----------LLDVILG-------------------TAVIDM 249
                         N F           L D+  G                    A+I +
Sbjct: 533 LMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISL 592

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y KCGSI+ A+ IF  M  +N +SW+ +I +   HG+G +ALDLF  M    + PN +TF
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           + +L ACSH GLVEEGL  F SM + + + P   HY C+VD+LGRAG+LD A + ++ M 
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           +  +  +W  LL AC++HKN+++ E+AAK LLE +P +   YVLLSN YA  G+W +  +
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 772

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R +M  R ++K PG +WIEV+N +H F VGD  HP S++IY+ L  L+++L   GY  +
Sbjct: 773 VRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQE 832

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
                H+ ++E K    + HSEKLA+AFGL+  P    +R++KNLRVC DCHS++K  S 
Sbjct: 833 NPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSE 892

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +TRR I++RD  RFHHF  G+CSC DYW
Sbjct: 893 VTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 156/362 (43%), Gaps = 60/362 (16%)

Query: 34  GHEQNPMNPRVPMQMG---PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT 90
           GH +  +     MQ+    PDC    S+     +++  S  ++ + +Q+H+ ++  G   
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASL-----LAACASVGDLQKGKQLHSYLLKAGMSF 278

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           + I    LL +Y     +  AH +FN     + V W++M+  + +++D    FE F +  
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+  + +T P ++R C     I +G  IH + +K+G + D +V   L+DMY+K + +D
Sbjct: 339 ATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLD 398

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR++ + +  RD+V+WT M                                        
Sbjct: 399 KARKILEMLEKRDVVSWTSM---------------------------------------- 418

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
                  IA Y  H   ++AL  F  M    V P+ I   S   AC+    + +GL++ +
Sbjct: 419 -------IAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL---GACRIH 387
            ++       D+  +  +V+L  R GR +EA  L   +   KDE  W  L+   G  R++
Sbjct: 472 RVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREID-HKDEITWNGLISGFGQSRLY 529

Query: 388 KN 389
           + 
Sbjct: 530 EQ 531



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 191/449 (42%), Gaps = 74/449 (16%)

Query: 39  PMNPRVPMQM-GPDCQFTRSVDPKFFISSLLSCRNIFQ----IRQVHAQIVAGGTLTNLI 93
           P NP   + +        R++       +L +CR        + ++HA  V  G   + +
Sbjct: 20  PDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRL 79

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           + N L+ +YA +  +  A  +F  +  RD VSW  M+ G+++       F  + +     
Sbjct: 80  IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTA 139

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY---------- 203
           +    Y L  V+ AC   K    GR+IH  V K     + FV  AL+ +Y          
Sbjct: 140 VIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAE 199

Query: 204 ---------------------AKCKVIDDARQLFDQMPTR----DLVTWTVMIGA----- 233
                                A+C   + A Q+FD+M       D VT   ++ A     
Sbjct: 200 RVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259

Query: 234 --------NKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                   + +LL      D I   +++D+Y KCG I++A +IF+   + NV+ W+ M+ 
Sbjct: 260 DLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAV 338
           AYG      K+ ++F  M ++ + PN+ T+  +L  C+ TG +E G ++ S S+ + F  
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGF-- 377

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
             D+     ++D+  +   LD+A K++E M  ++D   W +++     H   D  E A  
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILE-MLEKRDVVSWTSMIAGYVQH---DFCEEALA 433

Query: 399 SLLERQ-----PQNPGHYVLLSNVYANAG 422
           +  E Q     P N G   L S   A AG
Sbjct: 434 TFKEMQDCGVWPDNIG---LASAASACAG 459



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           IS+L +  +I Q +QVH + V  G  +   VAN L+ +Y    ++ DA  +F+ M  R+ 
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE 614

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHD 182
           VSW+ ++   S+    +   + F +  + G++ +  T   V+ AC     +  G      
Sbjct: 615 VSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKS 674

Query: 183 IVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLD 239
           +    GL+   D + C  +VD+  +   +D AR+  D+MP T + + W  ++ A K   +
Sbjct: 675 MSNVYGLNPIPDHYAC--VVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKN 732

Query: 240 VILG 243
           + +G
Sbjct: 733 IEIG 736


>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
 gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 314/573 (54%), Gaps = 60/573 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKALTDAHALFNGMKER 121
           ++ L  C N+ +++++ A ++  G   +  ++N +L   A  +  +L  A  LF  +   
Sbjct: 13  LTVLQGCNNLTRLKKIQAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNP 72

Query: 122 DSVSWSVMVGGFSKVADFINC-FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            + +W+ ++ GF++    +   F   R         D++T  F ++AC   K +     +
Sbjct: 73  QTQAWNSIIRGFAQSPSPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEV 132

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
           H  ++++G + D  VC  LV  Y +   ++ AR +FD MP RDLV W  MI         
Sbjct: 133 HGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYH 192

Query: 232 ---------------GANKFLL------------------------------DVILGTAV 246
                          G + F L                              +V +G A+
Sbjct: 193 QEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNAL 252

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           IDMYAKCGS+D A E+F+ M  ++  +W++MI  +G HG G +A+  F  ML + V PN 
Sbjct: 253 IDMYAKCGSLDGALEVFNGM-PRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNS 311

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           I F+ LL  CSH GLVEEG+  F  M   F V+P +KHY C+VD+ GRAG+L++AL++I 
Sbjct: 312 IAFLGLLCGCSHQGLVEEGVEFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIG 371

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
               + D  LW  LL + +IHKNV + E+A ++L +    N G  VLL+ +YA A   Q 
Sbjct: 372 DSPWQDDPVLWRILLSSSKIHKNVVIGEIAMRNLSQLGAVNAGDCVLLATIYAGANDEQG 431

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           VA++R L+ ++ +K  PGW+WIEV +++H+F V D +HP SE IY+ L  ++ K  +AGY
Sbjct: 432 VARMRKLIKKQGIKTTPGWSWIEVSDQVHRFVVDDKSHPDSEMIYQKLEEVTHKATMAGY 491

Query: 487 IPD-TNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           + D + F  H    EE    +   HSEKLAIAFGL  TPEGT +RI+KNLRVC DCH F 
Sbjct: 492 VEDKSQFIFHGSCSEECLESSSTYHSEKLAIAFGLAKTPEGTSLRIVKNLRVCRDCHEFT 551

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K VS    R IIVRD  RFHHF+GG CSCRDYW
Sbjct: 552 KFVSRAFNRDIIVRDRLRFHHFKGGLCSCRDYW 584


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/487 (40%), Positives = 288/487 (59%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N ++  YA    +++A  LF+ M +RD VSW+ M+ G+S+          F +  
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G +L+  +    +  C D   + +G+ +H  ++K G +   FV               
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFV--------------- 446

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCGSI+ A ++F  M  K+
Sbjct: 447 --------------------------------GNALLLMYCKCGSIEEANDLFKEMAGKD 474

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           ++SW+ MIA Y  HG G+ AL  F  M    + P+  T V++L ACSHTGLV++G + F 
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           +M  D+ V P+ +HY CMVDLLGRAG L++A  L+++M  E D  +WG LLGA R+H N 
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +LAE AA  +   +P+N G YVLLSN+YA++GRW DV K+R  M  + +KK+PG++WIE+
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK H FSVGD  HP+ +EI+  L  L  +++ AGY+  T+  LHDV+EE K   +  HS
Sbjct: 655 QNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHS 714

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LA+A+G++    G  IR++KNLRVC DCH+ IK+++ IT R+II+RD NRFHHF+ G+
Sbjct: 715 ERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGS 774

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 775 CSCGDYW 781



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 157/392 (40%), Gaps = 68/392 (17%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N +  N LL  Y  +  + +A  LF   +    VSW+ ++GGF K    +      R+F 
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA----RQFF 242

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
                 D  +   +I        I   R + D   +S +  D F   A+V  Y + ++++
Sbjct: 243 DSMNVRDVVSWNTIITGYAQSGKIDEARQLFD---ESPVQ-DVFTWTAMVSGYIQNRMVE 298

Query: 211 DARQLFDQMPTRDLVTWTVMIGA---------NKFLLDVI------LGTAVIDMYAKCGS 255
           +AR+LFD+MP R+ V+W  M+            K L DV+          +I  YA+CG 
Sbjct: 299 EARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I  A+ +FD+M +++ +SW+AMIA Y   G   +AL LF  M       NR +F S L  
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418

Query: 316 CSHT-----------------------------------GLVEEGLRLFSSMWDDFAVRP 340
           C+                                     G +EE   LF  M        
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM-----AGK 473

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACRIHKNVDLAEMAA 397
           D+  +  M+    R G  + AL+  ESM  E    D+    A+L AC     VD      
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533

Query: 398 KSLLERQPQNPG--HYVLLSNVYANAGRWQDV 427
            ++ +     P   HY  + ++   AG  +D 
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDA 565



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 51/316 (16%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF-----REFI 150
           N ++  Y  +     A  LF+ M ERD VSW+VM+ G+ +  +     E F     R+  
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158

Query: 151 RCGMQLDSYTLPFVIRACR-------DRKDIVMGRLIHDIVLKSGLD------------- 190
                L  Y     +   R       ++ D+    L+   V  S ++             
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------NK 235
           +  + C  L+  + K K I +ARQ FD M  RD+V+W  +I                   
Sbjct: 219 LVSWNC--LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
            + DV   TA++  Y +   ++ ARE+FD+M ++N +SW+AM+A Y    + + A +LF 
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFD 336

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
           +M    V     T+ +++   +  G + E   LF  M      + D   +  M+    ++
Sbjct: 337 VMPCRNV----STWNTMITGYAQCGKISEAKNLFDKM-----PKRDPVSWAAMIAGYSQS 387

Query: 356 GRLDEALKLIESMSVE 371
           G   EAL+L   M  E
Sbjct: 388 GHSFEALRLFVQMERE 403



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 30/258 (11%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------GANKFLL------DVIL 242
            ++  Y +    + AR+LFD+MP RDLV+W VMI         G  + L       DV  
Sbjct: 100 GMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCS 159

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
              ++  YA+ G +D AR +FDRM +KN +SW+A+++AY  + + ++A     M+  SR 
Sbjct: 160 WNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC----MLFKSRE 215

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
               +++  LL        + E  + F SM     VR DV  +  ++    ++G++DEA 
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSM----NVR-DVVSWNTIITGYAQSGKIDEAR 270

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANA 421
           +L +   V+ D   W A++     ++ V+     A+ L ++ P+ N   +  +   Y   
Sbjct: 271 QLFDESPVQ-DVFTWTAMVSGYIQNRMVE----EARELFDKMPERNEVSWNAMLAGYVQG 325

Query: 422 GRWQDVAKIRDLMTRRRL 439
            R +   ++ D+M  R +
Sbjct: 326 ERMEMAKELFDVMPCRNV 343



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 23/232 (9%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S+L +C ++  +   +Q+H ++V GG  T   V N LL +Y    ++ +A+ LF  M 
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR- 178
            +D VSW+ M+ G+S+          F    R G++ D  T+  V+ AC     +  GR 
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFL 237
             + +    G+  +    A +VD+  +  +++DA  L   MP   D   W  ++GA++  
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591

Query: 238 LDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKNV 271
            +  L     D                  +YA  G      ++  RMR K V
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 312/553 (56%), Gaps = 54/553 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H+ +V  G   ++     LL IY+    L DAH +F  + ER  V+W+ +  G++    
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGK 192

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                + F++ +  G++ DSY +  V+ AC    D+  G  I   + +  +  + FV   
Sbjct: 193 HREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTT 252

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVT-------------------------------- 226
           LV++YAKC  ++ AR +FD M  +D+VT                                
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPD 312

Query: 227 ---------------------WTV-MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                W + +I  ++FL ++ +  A+IDMYAKCG++    E+F 
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            M++K+++  +A I+    +G  K +  +F       + P+  TF+ LL  C H GL+++
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           GLR F+++   +A++  V+HY CMVDL GRAG LD+A +LI  M +  +  +WGALL  C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           R+ K+  LAE   K L+  +P N G+YV LSN+Y+ +GRW + A++RD+M R+ +KKIPG
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPG 552

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           ++WIE+E  +H+F   D +HP S++IY  L  L  ++ L G++P T F   DV++E K  
Sbjct: 553 YSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKER 612

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L  HSEKLA+AFGLI+T  G  IR++KNLRVCGDCH  +K +S ITRR I+VRD NRFH
Sbjct: 613 VLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672

Query: 565 HFEGGACSCRDYW 577
            F  G+CSC DYW
Sbjct: 673 CFTNGSCSCNDYW 685



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/385 (20%), Positives = 166/385 (43%), Gaps = 57/385 (14%)

Query: 64  ISSLLSCRNIF-QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           I +L+S  + F  ++QVH  ++      +  + N LL      +    +  LF+  +  +
Sbjct: 16  IKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPN 75

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
              ++ ++ GF     F    + F    + G+ L  +T P V++AC    +  +G  +H 
Sbjct: 76  IFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHS 135

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKF 236
           +V+K G + D     +L+ +Y+    ++DA ++F+++P R +VTWT +       G ++ 
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHRE 195

Query: 237 LLDVI-----LGTA-----VIDMYAKC---GSIDS------------------------- 258
            +D+      +G       ++ + + C   G +DS                         
Sbjct: 196 AIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVN 255

Query: 259 ----------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
                     AR +FD M +K++++WS MI  Y  +   K+ ++ F  ML   + P++ +
Sbjct: 256 LYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFS 315

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            V  L +C+  G ++ G     S+ D      ++     ++D+  + G +    ++ + M
Sbjct: 316 IVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374

Query: 369 SVEKDEGLWGALLGACRIHKNVDLA 393
             EKD  +  A +     + +V L+
Sbjct: 375 K-EKDIVIMNAAISGLAKNGHVKLS 398


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 320/592 (54%), Gaps = 91/592 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++HA+IVA G  T+L+VA  L+ +Y    +  +A  +F+ MK+RD VSW+VM+G +   
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            DF    E +++    G +    T   ++ AC   K +  GRL+H  +L+ GLD +  V 
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 197 AALVDMYAKCKVIDDA----------------------------------RQLFDQMPTR 222
            ALV+MYAKC  +++A                                  R++FD++ +R
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 223 DLVTWTV--------------------MIGA----------------------------- 233
           D ++W                      M GA                             
Sbjct: 407 DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466

Query: 234 ------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                 ++   +V++   +I+MYA+CGS++ A  +F   ++K V+SW+AM+AA+  +G+ 
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRY 526

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
            +ALDLF  M    V P+ +T+ S+L+ C+H G +E+G R F+ M +  A+ P   H+  
Sbjct: 527 AEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAA 586

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVDLLGR+GRL +A +L+ESM  E D   W   L ACRIH  ++L E AA+ + E  P +
Sbjct: 587 MVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSS 646

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
              Y+ +SN+YA  G W+ VA +R  M  R LKK+PG ++IEV+ K+H+FS G   HP++
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT-PEGT 526
           +EI   L  L   +  AGY+PDT   LHDV E  K   L  HSEK+AIAFGL+++   G 
Sbjct: 707 DEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGE 766

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG-GACSCRDYW 577
            IR++KNLRVC DCH+  K ++ I  R IIVRD NRFH F   G CSC DYW
Sbjct: 767 PIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 188/415 (45%), Gaps = 92/415 (22%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
            D   F+S L +C ++ Q R++H ++   G  +   +AN L+ +YA   ++ DA  +F  
Sbjct: 108 TDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQS 167

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           ++ RD  SW+ ++   S+  D+      F+E ++C ++ +S T   VI      + +  G
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKE-MKCDVKPNSTTYINVISGFSTPEVLPEG 226

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
           R IH  ++ +G D D  V  AL++MY KC    +AR++FD+M  RD+V+W VMIG     
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 234 --------------------NKFLLDVILG------------------------------ 243
                                K     ILG                              
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK--------------- 288
           TA+++MYAKCGS++ AR++F+ M+ ++ ++WS +I AY  +G GK               
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 289 -------------------KALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRL 328
                               A+ +F  M  +  L P+ +TF+++L AC+  G + E ++ 
Sbjct: 407 DTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKA 465

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             +   +  +  +V     ++++  R G L+EA +L  + + EK    W A++ A
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLF-AAAKEKTVVSWTAMVAA 519



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 19/173 (10%)

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAAYGYHGQGK 288
           I  ++F  D ++G A+I MY KC S+  AR +F+ M  RQ+NV+SW+AMIAAY  +G   
Sbjct: 33  IRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHST 92

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE-GLRLFSSMWDDFAVRPDVKHYTC 347
           +AL L+  M    +  + +TFVS+L ACS      E   R+F S  D F    +      
Sbjct: 93  EALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANA----- 147

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL----------GACRIHKNV 390
           +V +  R G + +A ++ +S+   +DE  W A++          GA RI K +
Sbjct: 148 LVTMYARFGSVGDAKRMFQSLQT-RDETSWNAVILAHSQSGDWSGALRIFKEM 199



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 123/281 (43%), Gaps = 56/281 (19%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           Q D+ T   V+ +C    D+V GR +H+ +  S  + D  V  AL+ MY KC  + DAR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 215 LFDQMP--TRDLVTWTVMI------------------------GANKFLLDVILG----- 243
           +F+ M    R++V+W  MI                        G +      +LG     
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 244 ----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                  A++ MYA+ GS+  A+ +F  ++ ++  SW+A+I A+
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G    AL +F  M    V PN  T+++++   S   ++ EG ++ + +  +     D
Sbjct: 184 SQSGDWSGALRIFKEM-KCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDTD 241

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +   T ++++ G+ G   EA ++ + M  ++D   W  ++G
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIG 281


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 323/602 (53%), Gaps = 101/602 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH   +  G   ++ V N ++ +YA    + +A+ +F  MK +D VSW+ MV G+S++
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 137 ADF-----------------------------------INCFETFREFIRCGMQLDSYTL 161
             F                                       + FR+   CG + +  TL
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ-------FVCAALVDMYAKCKVIDDAR- 213
             ++  C     ++ G+  H   +K  L++D+        V  AL+DMY+KCK    AR 
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 430

Query: 214 --------------------------------QLFDQM--------PTRDLVTWTVM--- 230
                                           +LF QM        P    ++  +M   
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 490

Query: 231 -IGANKFLLDV--------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
            +GA +F   +               +   +IDMY+K G +D+AR +FD M Q+N +SW+
Sbjct: 491 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 550

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           +++  YG HG+G++AL +F  M    ++P+ +TFV +LYACSH+G+V++G+  F+ M  D
Sbjct: 551 SLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 610

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F V P  +HY CMVDLL RAGRLDEA++LI  M ++    +W ALL ACR++ NV+L E 
Sbjct: 611 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 670

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AA  LLE +  N G Y LLSN+YANA  W+DVA+IR LM    +KK PG +W++      
Sbjct: 671 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 730

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F  GD +HP S++IY +L  L ++++  GY+PD  F LHDVD+E K   L  HSEKLA+
Sbjct: 731 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLAL 790

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+G++ T  G  IRI KNLR CGDCHS   ++S I    IIVRD++RFHHF+ G+CSCR 
Sbjct: 791 AYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRG 850

Query: 576 YW 577
           YW
Sbjct: 851 YW 852



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 149/363 (41%), Gaps = 82/363 (22%)

Query: 40  MNPRVPMQMGPDCQFTRSVDPKFFISSLL-SCRNIFQIRQVHAQIVAGGT---------- 88
           + P+ P+       F+ +       S+L   C+++     +H Q++  G           
Sbjct: 8   LKPKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISM 67

Query: 89  -LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
            LT    A  L  +  LH +   +H +F          W+ ++     +    +  + +R
Sbjct: 68  YLTFNSPAKALSVLRRLHPS---SHTVF---------WWNQLIRRSVHLGFLEDVLQLYR 115

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
              R G + D YT PFV++AC +      G  +H +V  SG + + FV   LV MY +C 
Sbjct: 116 RMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCG 175

Query: 208 VIDDARQLFDQMPTR---DLVTWTVMIGANK--------------------------FLL 238
             ++ARQ+FD+M  R   DLV+W  ++ A                             L+
Sbjct: 176 AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLV 235

Query: 239 DVILGTAVIDMYAK-----------------------------CGSIDSAREIFDRMRQK 269
           +V+   A +  +++                             CG ++ A ++F+RM+ K
Sbjct: 236 NVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 295

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +V+SW+AM+  Y   G+   AL LF  +   ++  N +T+ +++   +  GL  E L +F
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 330 SSM 332
             M
Sbjct: 356 RQM 358



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 94/209 (44%), Gaps = 24/209 (11%)

Query: 54  FTRSVDPKFFI--------SSLLSCRNIFQIR---QVHAQIVAGGTLTN-LIVANKLLYI 101
           F++ + P  F+         +L++C  +  +R   Q+HA ++     +  L VAN L+ +
Sbjct: 465 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 524

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           Y+    +  A  +F+ M +R+ VSW+ ++ G+          + F E  + G+  D  T 
Sbjct: 525 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTF 584

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC------AALVDMYAKCKVIDDARQL 215
             V+ AC        G +   I   +G++ D  V       A +VD+ ++   +D+A +L
Sbjct: 585 VVVLYACSHS-----GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 639

Query: 216 FDQMPTRDL-VTWTVMIGANKFLLDVILG 243
              MP +     W  ++ A +   +V LG
Sbjct: 640 IRGMPMKPTPAVWVALLSACRVYANVELG 668


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/554 (37%), Positives = 312/554 (56%), Gaps = 55/554 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDA-HALFNGMKERDSVSWSVMVGGFSKVA 137
           +H        ++++ V N L+ +Y     + +A   +F+ M  +   SW+ ++ G+++ +
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           D     + + +    G+  D +T+  ++ AC   K +  G  IH   L++GL +D F+  
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 349

Query: 198 ALVDMYAKCK-------------------------------VIDDARQLFDQMPTRDLVT 226
           +L+ +Y  C                                + D+A  LF QM +  +  
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409

Query: 227 WTVMI----GANKFLL-------------------DVILGTAVIDMYAKCGSIDSAREIF 263
           + + I    GA   L                    D+ + +++IDMYAK G I  ++ IF
Sbjct: 410 YEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 469

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           DR+R+K+V SW+ +IA YG HG+GK+AL+LF  ML   + P+  TF  +L ACSH GLVE
Sbjct: 470 DRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVE 529

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F+ M +   + P ++HYTC+VD+LGRAGR+D+AL+LIE M  + D  +W +LL +
Sbjct: 530 DGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSS 589

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CRIH N+ L E  A  LLE +P+ P +YVL+SN++A +G+W DV ++R  M    L+K  
Sbjct: 590 CRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDA 649

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +WIEV  K+H F +GD   P+ EE+      L  K+   GY PDT   LHD++EE K+
Sbjct: 650 GCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKI 709

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
           G L  HSEKLAI+FGL+ T +G  +R+ KNLR+CGDCH+  K +S +  R I+VRD  RF
Sbjct: 710 GILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRF 769

Query: 564 HHFEGGACSCRDYW 577
           HHF  G CSC DYW
Sbjct: 770 HHFRDGICSCGDYW 783



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 122/268 (45%), Gaps = 51/268 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVAN-KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R++H  + A     N  V N +++ +Y++  + +D+  +F+ ++ ++   W+ +V  +++
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 184

Query: 136 VADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              F +    F E I     + D++TLP VI+AC    D+ +G++IH +  K  L  D F
Sbjct: 185 NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 244

Query: 195 VCAALVDMYAKCKVIDDA-RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           V  AL+ MY KC ++++A +++FD M T+ + +W                          
Sbjct: 245 VGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSW-------------------------- 278

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
                                +A++  Y  +   +KALDL+  M  S + P+  T  SLL
Sbjct: 279 ---------------------NALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 317

Query: 314 YACSHTGLVEEGLRLFS-SMWDDFAVRP 340
            ACS    +  G  +   ++ +  AV P
Sbjct: 318 LACSRMKSLHYGEEIHGFALRNGLAVDP 345



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 52/236 (22%)

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
           S  +  +++AC  RKDI +GR +H++V  S                              
Sbjct: 105 SEAMGVLLQACGQRKDIEVGRRLHEMVSAS------------------------------ 134

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                            +F  D +L T +I MY+ CGS   +R +FD++R+KN+  W+A+
Sbjct: 135 ----------------TQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAI 178

Query: 278 IAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGL-RLFSSMWDD 335
           ++AY  +   + A+ +F  ++S +   P+  T   ++ AC+  GL++ GL ++   M   
Sbjct: 179 VSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATK 236

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
             +  DV     ++ + G+ G ++EA+K +  +   K    W ALL  C   +N D
Sbjct: 237 MDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL--CGYAQNSD 290



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 97/217 (44%), Gaps = 32/217 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   +      ++ V++ ++ +YA    +  +  +F+ ++E+D  SW+V++ G+   
Sbjct: 431 KELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIH 490

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL-------IHDIVLKSGL 189
                  E F + +R G++ D +T   ++ AC     +  G         +H+I  K   
Sbjct: 491 GRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPK--- 547

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI- 247
            ++ + C  +VDM  +   IDDA +L ++MP   D   W+ ++ + +   ++ LG  V  
Sbjct: 548 -LEHYTC--VVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVAN 604

Query: 248 -----------------DMYAKCGSIDSAREIFDRMR 267
                            +++A  G  D  R +  RM+
Sbjct: 605 KLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMK 641


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/524 (39%), Positives = 309/524 (58%), Gaps = 57/524 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETF- 146
           ++I    ++  Y  +  + DA  +F+ M E+  VSW+ M+ G+    ++ D    FE   
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMP 261

Query: 147 -REFIRC-------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF---- 194
            +  I C       G + +      V  + ++R D     +I  I  ++G +++      
Sbjct: 262 VKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIK-IHERNGFELEALDLFI 320

Query: 195 -------------------VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
                              VCA+L  ++         +Q+  Q+               +
Sbjct: 321 LMQKQGVRPTFPTLISILSVCASLASLH-------HGKQVHAQLVR------------CQ 361

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF- 294
           F +DV + + ++ MY KCG +  ++ IFDR   K++I W+++I+ Y  HG G++AL +F 
Sbjct: 362 FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFC 421

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
            M LS    PN +TFV+ L ACS+ G+VEEGL+++ SM   F V+P   HY CMVD+LGR
Sbjct: 422 EMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGR 481

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AGR +EA+++I+SM+VE D  +WG+LLGACR H  +D+AE  AK L+E +P+N G Y+LL
Sbjct: 482 AGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILL 541

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD-STHPQSEEIYRM 473
           SN+YA+ GRW DVA++R LM  R ++K PG +W EVENK+H F+ G  ++HP+ E I ++
Sbjct: 542 SNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKI 601

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           L  L   L  AGY PD ++ LHDVDEE KV +L  HSE+LA+A+ L+   EG  IR+MKN
Sbjct: 602 LDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKN 661

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LRVC DCH+ IK +S +  R II+RDANRFHHF  G CSC+DYW
Sbjct: 662 LRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 178/425 (41%), Gaps = 86/425 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETFR 147
           N+I  N L+  Y  +  + +A  +F+ M ER+ VSW+ +V G+    KV    + F    
Sbjct: 78  NIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP 137

Query: 148 E------------FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD----- 190
           E            F++ G   D+  L  +I    D+ +I    +IH +  +  +D     
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLYEMIP---DKDNIARTSMIHGLCKEGRVDEAREI 194

Query: 191 IDQF------VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLD-- 239
            D+           +V  Y +   +DDAR++FD MP +  V+WT M+     N  + D  
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAE 254

Query: 240 ----------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                     VI   A+I    + G I  AR +FD M+++N  SW  +I  +  +G   +
Sbjct: 255 ELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM----------------- 332
           ALDLF +M    V P   T +S+L  C+    +  G ++ + +                 
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMT 374

Query: 333 --------------WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDE 374
                         +D F  + D+  +  ++      G  +EALK+   M    S + +E
Sbjct: 375 MYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433

Query: 375 GLWGALLGACR----IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
             + A L AC     + + + + E + +S+   +P    HY  + ++   AGR+ +  ++
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYE-SMESVFGVKPIT-AHYACMVDMLGRAGRFNEAMEM 491

Query: 431 RDLMT 435
            D MT
Sbjct: 492 IDSMT 496



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 31/225 (13%)

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           DAR+LFD+MP R++++W  ++                  Y K G ID AR++FD M ++N
Sbjct: 66  DARKLFDEMPDRNIISWNGLVSG----------------YMKNGEIDEARKVFDLMPERN 109

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+A++  Y ++G+   A  LF  M       N++++  +L      G +++  +L+ 
Sbjct: 110 VVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDGRIDDACKLYE 165

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            + D      D    T M+  L + GR+DEA ++ + MS E+    W  ++     +  V
Sbjct: 166 MIPDK-----DNIARTSMIHGLCKEGRVDEAREIFDEMS-ERSVITWTTMVTGYGQNNRV 219

Query: 391 DLAEMAAKSLLERQPQNPG-HYVLLSNVYANAGRWQDVAKIRDLM 434
           D     A+ + +  P+     +  +   Y   GR +D  ++ ++M
Sbjct: 220 D----DARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 260



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 35/259 (13%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
            LV  Y K   ID+AR++FD MP R++V+W                TA++  Y   G +D
Sbjct: 84  GLVSGYMKNGEIDEARKVFDLMPERNVVSW----------------TALVKGYVHNGKVD 127

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A  +F +M +KN +SW+ M+  +   G+   A  L+ M+       + I   S+++   
Sbjct: 128 VAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLC 183

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V+E   +F  M +   +      +T MV   G+  R+D+A K+ + M  EK E  W
Sbjct: 184 KEGRVDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVSW 237

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            ++L     +  ++ AE     L E  P  P   +  + + +  G+  ++AK R +    
Sbjct: 238 TSMLMGYVQNGRIEDAE----ELFEVMPVKP--VIACNAMISGLGQKGEIAKARRVFDSM 291

Query: 438 RLKKIPGWTWIEVENKIHQ 456
           + +    W  +    KIH+
Sbjct: 292 KERNDASWQTV---IKIHE 307



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 50/221 (22%)

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-------- 302
           ++ G I  AR++FD    K++ SW++M+A Y  +   + A  LF  M    +        
Sbjct: 28  SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVS 87

Query: 303 -----------------LPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
                            +P R  +++ +L+    H G V+    LF  M       P+  
Sbjct: 88  GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM-------PEKN 140

Query: 344 HYTCMVDLLG--RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-----EMA 396
             +  V L+G  + GR+D+A KL E +  + +      + G C+    VD A     EM+
Sbjct: 141 KVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCK-EGRVDEAREIFDEMS 199

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            +S++         +  +   Y    R  D  KI D+M  +
Sbjct: 200 ERSVIT--------WTTMVTGYGQNNRVDDARKIFDVMPEK 232



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 27/234 (11%)

Query: 14  SAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCR 71
           S K R  +S  T     E +G E   ++  + MQ        + V P F   IS L  C 
Sbjct: 290 SMKERNDASWQTVIKIHERNGFELEALDLFILMQ-------KQGVRPTFPTLISILSVCA 342

Query: 72  NIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           ++  +   +QVHAQ+V      ++ VA+ L+ +Y     L  +  +F+    +D + W+ 
Sbjct: 343 SLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNS 402

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLP----FV--IRACRDRKDIVMGRLIHD 182
           ++ G++         + F     C M L   T P    FV  + AC     +  G  I++
Sbjct: 403 IISGYASHGLGEEALKVF-----CEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYE 457

Query: 183 IVLKSGLDIDQFVC--AALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
             ++S   +       A +VDM  +    ++A ++ D M    D   W  ++GA
Sbjct: 458 -SMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 294/526 (55%), Gaps = 53/526 (10%)

Query: 52  CQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           CQF   V     IS    CRN+  +RQV  ++    T++     N  +     +  L DA
Sbjct: 449 CQFNSYV-CNALISMYGKCRNMEYVRQVFNRMRVKDTVS----WNSFIAALVQNNMLEDA 503

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F+ M  RD VSW+ ++  +++        E F+  +    + +S  L  ++  C   
Sbjct: 504 RHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGL 563

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
               +G+ IH + +K G+D +                                       
Sbjct: 564 GSAKLGQQIHTVAIKHGMDSE--------------------------------------- 584

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                   +I+  A++ MY KCG  DS  ++FD M ++++ +W+  I     HG G++A+
Sbjct: 585 --------LIVANALMSMYFKCGCADS-HKVFDSMEERDIFTWNTFITGCAQHGLGREAI 635

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            ++  M S  VLPN +TFV LL ACSH GLV+EG + F SM  D+ + P ++HY CMVDL
Sbjct: 636 KMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDL 695

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LGR G +  A K I  M +E D  +W ALLGAC+IHKN ++   AA+ L   +P N G+Y
Sbjct: 696 LGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNY 755

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           V+LSN+Y++ G W +VA++R +M +R + K PG +W+++ NK+H F  GD  H + EEI 
Sbjct: 756 VMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEID 815

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  L   L   GY+PDT F LHD+DEE K  +L  HSEKLA+A+GL+ TP+G  I+IM
Sbjct: 816 YTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIM 875

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+CGDCH+FIK VS +T+R I +RD NRFHHF  G+CSC D+W
Sbjct: 876 KNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 169/379 (44%), Gaps = 60/379 (15%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N ++  Y   + + DA  LF  M +R+ V+W+VM+ G+ ++      ++ FR     G  
Sbjct: 161 NSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGAS 220

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-CKVIDDARQ 214
            D      V+ A    +D+ +  ++  +VLK+G + D  +  +++++Y +    +D A +
Sbjct: 221 PDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIK 280

Query: 215 LFDQMPTRDLVTWTVMIGA----------------------------------------N 234
            FD M  R+  TW+ MI A                                         
Sbjct: 281 FFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEA 340

Query: 235 KFLLD------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
           + L +      V+   A+I  Y + G +D A+E+FDRM  +N ISW+ MIA Y  +G+ +
Sbjct: 341 RILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSE 400

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK--HYT 346
           +ALDL   +  + +LP+  +  S   ACSH G +E G ++ S      AV+   +   Y 
Sbjct: 401 EALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHS-----LAVKAGCQFNSYV 455

Query: 347 C--MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           C  ++ + G+   ++   ++   M V KD   W + + A   +  ++ A     ++L R 
Sbjct: 456 CNALISMYGKCRNMEYVRQVFNRMRV-KDTVSWNSFIAALVQNNMLEDARHIFDNMLSRD 514

Query: 405 PQNPGHYVLLSNVYANAGR 423
             +   +  + + YA A R
Sbjct: 515 VVS---WTTIISAYAQAER 530



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 139/328 (42%), Gaps = 52/328 (15%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L +A  +F+ M  RD ++W+ M+  +                   GM  D+  L   I  
Sbjct: 49  LREAREVFDAMPHRDIIAWNSMISAYCN----------------SGMLEDARILFDAISG 92

Query: 168 CRDRKDIVM-------GRLIHDIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
              R   ++       GR++    +  G+ + +     A+V  Y +   I  AR+LFD M
Sbjct: 93  GNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAM 152

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
           P+RD+ +W  M+                  Y     +  A  +F +M Q+N+++W+ MI+
Sbjct: 153 PSRDVTSWNSMVTG----------------YCHSRQMVDAWNLFKQMPQRNLVTWTVMIS 196

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-LRLFSSMWDDFAV 338
            Y    Q  K  D+F MM      P++  F S+L A   TGL + G L +   +      
Sbjct: 197 GYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAV--TGLQDLGVLEVLRPLVLKTGF 254

Query: 339 RPDVKHYTCMVDLLGR-AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
             DV   T ++++  R A  LD A+K  + M VE++E  W  ++ A      +D    AA
Sbjct: 255 ESDVVIGTSILNVYTRDASALDIAIKFFDGM-VERNEYTWSTMIAALSHGGRID----AA 309

Query: 398 KSLLERQPQN--PGHYVLLSNVYANAGR 423
            ++  R P    P    LL+ + A  GR
Sbjct: 310 IAVYGRDPVKSIPSQTALLTGL-ARCGR 336



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 19/157 (12%)

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------NKFLLDVI 241
           +D+   +A +   A+   + +AR++FD MP RD++ W  MI A          + L D I
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 242 LG------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
            G      T ++  YA+ G +  AR +FD M ++N ++W+AM++ Y  +G    A  LF 
Sbjct: 91  SGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFD 150

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
            M S  V     ++ S++    H+  + +   LF  M
Sbjct: 151 AMPSRDV----TSWNSMVTGYCHSRQMVDAWNLFKQM 183


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 320/569 (56%), Gaps = 55/569 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FI++    +N+   R++H  + +     +  + N L+++Y    ++ +AH +F+ M+++D
Sbjct: 57  FITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKD 116

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            VSW+ ++ G+++              ++   + + +T   +++A     D  +G  IH 
Sbjct: 117 MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------ 230
           + +K     D +V +AL+DMYA+C  +D A  +FD++ +++ V+W  +            
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 231 -----------------------------IGA-------------NKFLLDVILGTAVID 248
                                        IGA             ++  L   +G  ++D
Sbjct: 237 ALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLD 296

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAK GS+  AR++F+R+  K++++W++M+ A+  +G GK+A+  F  M  S +  N+IT
Sbjct: 297 MYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQIT 356

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +L ACSH GLV+EG   F  M  ++ + P+++HY  +VDLLGRAG L+ AL  I  M
Sbjct: 357 FLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKM 415

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +E    +WGALL ACR+HKN  + + AA  + +  P + G  VLL N+YA+ G W   A
Sbjct: 416 PMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAAA 475

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           ++R +M    +KK P  +W+E+ N +H F   D THP++EEIY+M   +S K+   GY+P
Sbjct: 476 RVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKEGYVP 535

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           D ++ L  VDE+ +  NL  HSEK+A+AF LI  P G  IRIMKN+R+CGDCHS  K++S
Sbjct: 536 DMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAFKYIS 595

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  R I+VRD NRFHHF  G+CSC DYW
Sbjct: 596 KVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 24/192 (12%)

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V  A +   A+ K +DDAR++   + +            ++F  D  L  ++I +Y KCG
Sbjct: 53  VYHAFITACAQSKNLDDARKIHGHLAS------------SRFEGDAFLDNSLIHLYCKCG 100

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL- 313
           S+  A ++FD+MR+K+++SW+++IA Y  +    +A+ L P ML  R  PN  TF SLL 
Sbjct: 101 SVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLK 160

Query: 314 ----YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
               YA S  G     L +     +D  V       + ++D+  R G++D A  + + + 
Sbjct: 161 AAGAYADSGIGGQIHALAVKCDWHEDVYVG------SALLDMYARCGKMDMATAVFDKLD 214

Query: 370 VEKDEGLWGALL 381
             K+   W AL+
Sbjct: 215 -SKNGVSWNALI 225


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 326/590 (55%), Gaps = 61/590 (10%)

Query: 48  MGPDCQFTRSVDPKFFISSLL-SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYA 103
           M  + Q  R     F    LL +C  +  +   R VHAQ+   G   ++ V N L+ +YA
Sbjct: 106 MYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA 165

Query: 104 LHKALTDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
             + L  A  +F G+   ER  VSW+ +V  +++  + +   E F    +  ++ D   L
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVAL 225

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD---- 217
             V+ A    +D+  GR IH  V+K GL+I+  +  +L  MYAKC  +  A+ LFD    
Sbjct: 226 VSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKS 285

Query: 218 ---------------------------QMPTRDLVTWTVMI------------------- 231
                                      +M  +D+   T+ I                   
Sbjct: 286 PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSM 345

Query: 232 ----GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
               G + +  DV + +A+IDM+AKCGS++ AR +FDR   ++V+ WSAMI  YG HG+ 
Sbjct: 346 YEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRA 405

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           ++A+ L+  M    V PN +TF+ LL AC+H+G+V EG   F+ M  D  + P  +HY C
Sbjct: 406 REAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHKINPQQQHYAC 464

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           ++DLLGRAG LD+A ++I+ M V+    +WGALL AC+ H++V+L E AA+ L    P N
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            GHYV LSN+YA A  W  VA++R  M  + L K  G +W+EV  ++  F VGD +HP+ 
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           EEI R +  +  +L+  G++ + +  LHD+++E     L SHSE++AIA+GLI+TP+GT 
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTP 644

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +RI KNLR C +CH+  K +S +  R I+VRD NRFHHF+ G CSC DYW
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 184/383 (48%), Gaps = 60/383 (15%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F+ S + S  +  Q++Q+HA+++  G   +  +  KL++  +    +T A  +F+ +   
Sbjct: 23  FYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRP 82

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
               W+ ++ G+S+   F +    +       +  DS+T P +++AC     + MGR +H
Sbjct: 83  QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGA------ 233
             V + G D D FV   L+ +YAKC+ +  AR +F+   +P R +V+WT ++ A      
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 234 ---------------------------NKF--LLDVILG----TAVIDM----------- 249
                                      N F  L D+  G     +V+ M           
Sbjct: 203 PMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 250 ----YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
               YAKCG + +A+ +FD+M+  N+I W+AMI+ Y  +G  ++A+D+F  M++  V P+
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            I+  S + AC+  G +E+   ++  +   D+  R DV   + ++D+  + G + E  +L
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSV-EGARL 379

Query: 365 IESMSVEKDEGLWGALLGACRIH 387
           +   ++++D  +W A++    +H
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLH 402


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/527 (39%), Positives = 317/527 (60%), Gaps = 34/527 (6%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H  ++  G   NL V N L+ +Y   K+L +A  + + +  RD VSW+ MV  +++  
Sbjct: 141 QIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200

Query: 138 DFINCFETFREFIRCGMQLDSYT----LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            F +  E  RE     ++ +  T    LP V     D   + +  +   +  KS +  + 
Sbjct: 201 RFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNV-LYVKEMFLKLTKKSVISWN- 258

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGA---------------- 233
                ++ MY    +  +A  L+ QM       D+V+   ++ A                
Sbjct: 259 ----VMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKF 314

Query: 234 ---NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
               K L +++L  A+IDMYAKCG +  AR +F++M+ ++V+SW+++I+AYG  GQG+ A
Sbjct: 315 AERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDA 374

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + +F  M +S + P+ I FVS+L ACSH GL+++G R + ++  +  + P ++H+ C+VD
Sbjct: 375 VAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDG-RYYFNLMAECGITPKLEHFACVVD 433

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRAG++DEA   I  M +E DE +WG LL ACR++ N+++  +AA  LL   P++ G+
Sbjct: 434 LLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGY 493

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLLSN+YA AGRW DVA IR +M R+ +KK+PG + +E+ + +H F  GD +HPQS++I
Sbjct: 494 YVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKI 553

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y  L  L  K++  GY+P+T+  LHDV+EE K  +L  HSEKLA+AF +I T  GT IR+
Sbjct: 554 YEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRV 613

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLRVCGDCH   K +S I  R II+RD +RFHHF+ G CSC DYW
Sbjct: 614 TKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 163/338 (48%), Gaps = 32/338 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +I  ++++H +++    L  N  V  KL+ +YA       A  +F+ + +++ V ++VM+
Sbjct: 33  DINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMI 92

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             +     + +    ++     G   D YT P V++A      + +G  IH  VLK GLD
Sbjct: 93  RSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLD 152

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVILGT 244
           ++ +V   L+ MY KCK + +A+Q+ D++P RD+V+W  M+      G     L++    
Sbjct: 153 LNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREM 212

Query: 245 AVIDMYAKCGSIDS---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
             +++     ++ S                +E+F ++ +K+VISW+ MIA Y  +   K+
Sbjct: 213 EALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKE 272

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHY 345
           A+ L+  M ++ V P+ ++ VS+L A      +  G R+       FA R    P++   
Sbjct: 273 AVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHK-----FAERKKLLPNLLLE 327

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             ++D+  + G L +A  +   M   +D   W +++ A
Sbjct: 328 NALIDMYAKCGCLRDARAVFNQMQF-RDVVSWTSIISA 364



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 10/202 (4%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           PD     SV P +   S LS       R+VH        L NL++ N L+ +YA    L 
Sbjct: 287 PDVVSIVSVLPAYGDLSALSLG-----RRVHKFAERKKLLPNLLLENALIDMYAKCGCLR 341

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           DA A+FN M+ RD VSW+ ++  + K     +    F E    G+  DS     V+ AC 
Sbjct: 342 DARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACS 401

Query: 170 DRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVT 226
               +  GR   +++ + G+   ++ F C  +VD+  +   ID+A     QMP   D   
Sbjct: 402 HAGLLDDGRYYFNLMAECGITPKLEHFAC--VVDLLGRAGKIDEAYGFIRQMPLEPDERV 459

Query: 227 WTVMIGANKFLLDVILGTAVID 248
           W  ++ A +   ++ +G    D
Sbjct: 460 WGPLLSACRVYSNMNIGILAAD 481



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 45/214 (21%)

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL------GTAVIDMYAKCGSIDSAREIF 263
           D   ++ DQ P  D+ T   + G  K L D  L      G  ++ +YA CG    AR IF
Sbjct: 22  DLCNRILDQYP--DINTLKKLHG--KVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIF 77

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS------ 317
           D +  KNV+ ++ MI +Y  +   K AL ++  M +   +P+  T+  +L A S      
Sbjct: 78  DEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLW 137

Query: 318 -----HTGLVEEGLRL--------------------FSSMWDDFAVRPDVKHYTCMVDLL 352
                H  +++ GL L                       + D+   R DV  +  MV + 
Sbjct: 138 VGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCR-DVVSWNSMVSVY 196

Query: 353 GRAGRLDEALKL---IESMSVEKDEGLWGALLGA 383
            + GR ++AL+L   +E+++++ ++    +LL A
Sbjct: 197 AQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/553 (36%), Positives = 312/553 (56%), Gaps = 54/553 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H+ +V  G   ++     LL IY+    L DAH LF+ + +R  V+W+ +  G++    
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                + F++ +  G++ DSY +  V+ AC    D+  G  I   + +  +  + FV   
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVT-------------------------------- 226
           LV++YAKC  ++ AR +FD M  +D+VT                                
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312

Query: 227 ---------------------WTV-MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                W + +I  ++FL ++ +  A+IDMYAKCG++    E+F 
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            M++K+++  +A I+    +G  K +  +F       + P+  TF+ LL  C H GL+++
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           GLR F+++   +A++  V+HY CMVDL GRAG LD+A +LI  M +  +  +WGALL  C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           R+ K+  LAE   K L+  +P N G+YV LSN+Y+  GRW + A++RD+M ++ +KKIPG
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 552

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           ++WIE+E K+H+F   D +HP S++IY  L  L  ++ L G++P T F   DV+EE K  
Sbjct: 553 YSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKER 612

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L  HSEKLA+A GLI+T  G  IR++KNLRVCGDCH  +K +S ITRR I+VRD NRFH
Sbjct: 613 VLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672

Query: 565 HFEGGACSCRDYW 577
            F  G+CSC DYW
Sbjct: 673 CFTNGSCSCNDYW 685



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 158/365 (43%), Gaps = 57/365 (15%)

Query: 64  ISSLLSCR-NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           I +L+S    +  ++Q+H  ++      +  + N LL      +    ++ LF+  +  +
Sbjct: 16  IKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPN 75

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
              ++ ++ GF     F    + F    + G+ L  +T P V++AC       +G  +H 
Sbjct: 76  IFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS 135

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKF 236
           +V+K G + D     +L+ +Y+    ++DA +LFD++P R +VTWT +       G ++ 
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195

Query: 237 LLDVI-----LGTA-----VIDMYAKC---GSIDS------------------------- 258
            +D+      +G       ++ + + C   G +DS                         
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255

Query: 259 ----------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
                     AR +FD M +K++++WS MI  Y  +   K+ ++LF  ML   + P++ +
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            V  L +C+  G ++ G     S+ D      ++     ++D+  + G +    ++ + M
Sbjct: 316 IVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374

Query: 369 SVEKD 373
             EKD
Sbjct: 375 K-EKD 378


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/579 (37%), Positives = 321/579 (55%), Gaps = 66/579 (11%)

Query: 59  DPKFFISSLLSCRNIFQIR----QVHAQIVAGGT-LTNLIVANKLLYIYALHKALTDAHA 113
           +P   IS   S R + QI+    + H + V+  T L N    +          +++ A  
Sbjct: 33  NPILLISKCNSERELMQIQAYAIKSHQEDVSFNTKLINFCTES------PTESSMSYARH 86

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+ M E D V ++ +  G+S+  + +  F  F E +   +  D+YT P +++AC   K 
Sbjct: 87  LFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKA 146

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM-------------- 219
           +  GR +H + +K G+D + +VC  L++MY +C+ +D AR +FD++              
Sbjct: 147 LEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITG 206

Query: 220 ------PTRDLVTWTVMIGAN----------------------------------KFLLD 239
                 P   L  +  M G N                                   F   
Sbjct: 207 YARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKY 266

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V + TA+IDM+AKCGS+D A  IF+ MR K+  +WSAMI AY  HGQ + ++ +F  M S
Sbjct: 267 VKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRS 326

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             V P+ ITF+ LL ACSHTGLVEEG   FS M  +F + P +KHY  MVDLLGRAG L+
Sbjct: 327 ENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLE 386

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +A + I+ + +     LW  LL AC  H N++LAE  ++ +LE    + G YV+LSN+YA
Sbjct: 387 DAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYA 446

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
              +W+ V  +R +M  R+  K+PG + IEV N +H+F  GD     + +++R L  + +
Sbjct: 447 RNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 506

Query: 480 KLELAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           +L+LAGY+PDT+  +H D+ ++ K   L  HSEKLAIAFGL+ TP GT IR++KNLRVC 
Sbjct: 507 ELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCR 566

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCHS  K +S I  R +++RD  RFHHFE G CSCRD+W
Sbjct: 567 DCHSAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/586 (35%), Positives = 320/586 (54%), Gaps = 85/586 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH------------------------ 112
           RQ+H QI   G  + L V + L+ +YA    + DA+                        
Sbjct: 158 RQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRC 217

Query: 113 -------ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
                   LF+ M E+DS+SW+ ++ G ++   F    + F+E    G  +D +T   V+
Sbjct: 218 RFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVL 277

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
            AC     +  G+ IH  ++++    + FV +AL+DMY KC+ +  A  +F +M  ++++
Sbjct: 278 TACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVI 337

Query: 226 TWTVMI---GANKFLL-----------------DVILGT--------------------- 244
           +WT M+   G N +                   D  LG+                     
Sbjct: 338 SWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQA 397

Query: 245 -------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                        A+I +Y KCGS++ A ++F  M+ ++ +SW+A+++ Y   G+  + +
Sbjct: 398 LASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETI 457

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            LF  ML+  ++P+ +TFV +L ACS  GLVE+G   F  M  +  + P   HYTCM+DL
Sbjct: 458 SLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDL 517

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           L RAGRL+EA   I  M    D   W  LL +CR++ N+++ + AA+SL + +PQNP  Y
Sbjct: 518 LSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASY 577

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           +LLS++YA  G+W DVAK+R  M    +KK PG +WI+ +NK+H FS  D + P S++IY
Sbjct: 578 ILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIY 637

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L +L  K+   GY+PD +F LHDV++  K+  L  HSEKLAIAFGL+  P+G  IR++
Sbjct: 638 AKLESLYLKMIEEGYVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVV 697

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLRVCGDCH+  K++S IT+R I+VRDA RFH F+ G CSC D+W
Sbjct: 698 KNLRVCGDCHNATKYISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 185/436 (42%), Gaps = 71/436 (16%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL  Y+    L D   +F+ M   D VSW+ ++ G++           +   +
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML 129

Query: 151 RCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           + G + L+  T   ++    +R  + +GR IH  + K G     FV + LVDMYAK   I
Sbjct: 130 KDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI 189

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
           +DA ++F+++P +++V +  MI            T ++    +C  I  A ++FD M +K
Sbjct: 190 NDANRIFEEIPEKNIVVYNTMI------------TGLL----RCRFIVEAEQLFDNMPEK 233

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           + ISW+ +I     +G  K+A+D F  M       ++ TF S+L AC     ++EG ++ 
Sbjct: 234 DSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIH 293

Query: 330 ---------------SSMWDDFAVRPDVKH---------------YTCMVDLLGRAGRLD 359
                          S++ D +    +VK+               +T M+   G+ G  +
Sbjct: 294 AYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSE 353

Query: 360 EALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH--YVLL 414
           EA+++   M    +  D+   G+++ +C      +LA +   +    Q    G   +V +
Sbjct: 354 EAVRIFCDMQRNEIHPDDFTLGSVISSC-----ANLASLEEGAQFHGQALASGLICFVTV 408

Query: 415 SNVYAN-AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           SN      G+   +     L    +++    WT   + +   QF   + T          
Sbjct: 409 SNALITLYGKCGSLEHAHQLFHEMKIRDEVSWT--ALVSGYAQFGKANET---------- 456

Query: 474 LVTLSEKLELAGYIPD 489
            ++L E +   G +PD
Sbjct: 457 -ISLFETMLAHGIVPD 471



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 106/205 (51%), Gaps = 18/205 (8%)

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           ++ C + ++    + +H  ++++  + + F+   L++ Y K   + +AR +FD +P  +L
Sbjct: 12  LKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL 71

Query: 225 VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
            +W  ++ A                Y+K G +   + +FD M   +V+SW+++++ Y  +
Sbjct: 72  FSWNTLLSA----------------YSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGN 115

Query: 285 GQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           G   +++ ++ MML    V  NRITF ++L   S+ G V+ G ++   ++  F  +  + 
Sbjct: 116 GLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIF-KFGYQSYLF 174

Query: 344 HYTCMVDLLGRAGRLDEALKLIESM 368
             + +VD+  + G +++A ++ E +
Sbjct: 175 VGSPLVDMYAKTGFINDANRIFEEI 199


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/467 (43%), Positives = 292/467 (62%), Gaps = 41/467 (8%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+ +K+ +   W+ M+ G      F +  E +      G   +++T PFV++AC    D
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           + +G  IH +V+K      +++   +++M                               
Sbjct: 128 LQLGVKIHTLVVK------EWIHKCIMEM------------------------------- 150

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
              + +V +GT+++DMYAKCG+++ AR +FD M +K+++SW AMI  Y  +G  K+A+DL
Sbjct: 151 -GMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDL 209

Query: 294 FPMMLSSRVL---PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           F  M     L   P+  TF+ LL  C+H GLV+EG R F+SM+  F++ P ++HY CMVD
Sbjct: 210 FLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVD 269

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRAG LDEA +LI +M +E +  +WGALLGACRIH++  LAE+A K L+E +P N G+
Sbjct: 270 LLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGN 329

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLLSN+Y+   +W + AK+R  M  +R++K PG +WIEV+  +H+F VGD  HP SE+I
Sbjct: 330 YVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKI 389

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y  L  L++K+++AGY+P T+F L D++EE K   L  HSEKLAIAFGLI+      IR+
Sbjct: 390 YAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRV 449

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVCGDCH  IK +S+IT R I VRD NRFH F  G+CSC DYW
Sbjct: 450 VKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 496


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/615 (35%), Positives = 326/615 (53%), Gaps = 93/615 (15%)

Query: 56  RSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA--------- 103
           R  D   F S L SC  +  +R    VH  IV  G   +L   N L+ +YA         
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160

Query: 104 ---------------------------LHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
                                      +   +     +F  M  +D VS++ ++ G+++ 
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             + +     RE     ++ DS+TL  V+    +  D++ G+ IH  V++ G+D D ++ 
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIG 280

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRD--------------------------LVTWTVM 230
           ++LVDMYAK   I+D+ ++F ++  RD                          +VT  V 
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK 340

Query: 231 IGA----------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
            GA                              F  ++ + +A++DMY+KCG+I +AR+I
Sbjct: 341 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKI 400

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FDRM   + +SW+A+I  +  HG G +A+ LF  M    V PN++ FV++L ACSH GLV
Sbjct: 401 FDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +E    F+SM   + +  +++HY  + DLLGRAG+L+EA   I  M VE    +W  LL 
Sbjct: 461 DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           +C +HKN++LAE  A+ +     +N G YVL+ N+YA+ GRW+++AK+R  M ++ L+K 
Sbjct: 521 SCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK 580

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           P  +WIE++NK H F  GD +HP  ++I   L  + E++E  GY+ DT+  LHDVDEE K
Sbjct: 581 PACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHK 640

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L+ HSE+LA+AFG+I T  GT IR+ KN+R+C DCH  IK +S IT R IIVRD +R
Sbjct: 641 RELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSR 700

Query: 563 FHHFEGGACSCRDYW 577
           FHHF  G CSC DYW
Sbjct: 701 FHHFNRGNCSCGDYW 715



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 175/403 (43%), Gaps = 93/403 (23%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +Q+HAQ +   +L++   A+ ++ IY   K L +A  LF  +K    ++W  ++  F+
Sbjct: 23  QAKQLHAQFIRTQSLSH-TSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             + F     +F E    G   D    P V+++C    D+  G  +H  +++ G+D D +
Sbjct: 82  DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141

Query: 195 VCAALVDMYAK---------------------------------CKV---IDDARQLFDQ 218
              AL++MYAK                                 C +   ID  R++F+ 
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201

Query: 219 MPTRDLVTWTVMIGA------------------------NKFLL-----------DVI-- 241
           MP +D+V++  +I                          + F L           DVI  
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261

Query: 242 -----------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                            +G++++DMYAK   I+ +  +F R+  ++ ISW++++A Y  +
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G+  +AL LF  M++++V P  + F S++ AC+H   +  G +L   +        ++  
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSNIFI 380

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            + +VD+  + G +  A K+ + M+V  DE  W A++    +H
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALH 422


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/559 (36%), Positives = 320/559 (57%), Gaps = 54/559 (9%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +  ++++H      G L + +VAN  +  YA   +L  A  +F GM+ +   SW+ ++G 
Sbjct: 417 LLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGA 476

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            ++        + F   +  GM  D +T+  ++ AC   K +  G+ IH  +L++GL++D
Sbjct: 477 HAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELD 536

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW------------------------- 227
           +F+  +L+ +Y +C  +   + +FD+M  + LV W                         
Sbjct: 537 EFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLS 596

Query: 228 ----------TVMIGA-------------NKFLL------DVILGTAVIDMYAKCGSIDS 258
                     T ++GA             + F L      D  +  A+IDMYAKCG ++ 
Sbjct: 597 GGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQ 656

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           ++ IFDR+ +K+   W+ +IA YG HG G KA++LF +M +    P+  TF+ +L AC+H
Sbjct: 657 SQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNH 716

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GLV EGL+    M + + V+P ++HY C+VD+LGRAG+L EALKL+  M  E D G+W 
Sbjct: 717 AGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWS 776

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           +LL +CR + ++++ E  +K LLE +P    +YVLLSN+YA  G+W +V K+R  M    
Sbjct: 777 SLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENG 836

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           L K  G +WIE+   +++F V D +  +S++I +  + L +K+   GY PDT+  LH+++
Sbjct: 837 LHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELE 896

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           EE K+  L SHSEKLAI+FGL+ T +GT +R+ KNLR+C DCH+ IK VS + +R IIVR
Sbjct: 897 EEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVR 956

Query: 559 DANRFHHFEGGACSCRDYW 577
           D  RFHHF+ G C+C D+W
Sbjct: 957 DNKRFHHFKNGLCTCGDFW 975



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 184/423 (43%), Gaps = 69/423 (16%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    ++ + +C  + ++R    VH      G    + V N L+ +Y+    L +A ALF
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF 357

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDI 174
           +    ++ VSW+ ++ G+SK  DF   FE  +E  R   ++++  T+  V+ AC     +
Sbjct: 358 DMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQL 417

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN 234
           +  + IH    + G   D+ V  A V  YAKC  +D A ++F  M  + + +W  +IGA+
Sbjct: 418 LSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAH 477

Query: 235 --------------------------------------KFL----------------LDV 240
                                                 KFL                LD 
Sbjct: 478 AQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDE 537

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +G +++ +Y +C S+   + IFD+M  K+++ W+ MI  +  +    +ALD F  MLS 
Sbjct: 538 FIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSG 597

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH---YTC-MVDLLGRAG 356
            + P  I    +L ACS    +  G  + S     FA++  +      TC ++D+  + G
Sbjct: 598 GIKPQEIAVTGVLGACSQVSALRLGKEVHS-----FALKAHLSEDAFVTCALIDMYAKCG 652

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            ++++  + + ++ EKDE +W  ++    IH +  L  +    L++ +   P  +  L  
Sbjct: 653 CMEQSQNIFDRVN-EKDEAVWNVIIAGYGIHGH-GLKAIELFELMQNKGGRPDSFTFLGV 710

Query: 417 VYA 419
           + A
Sbjct: 711 LIA 713



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 138/307 (44%), Gaps = 60/307 (19%)

Query: 71  RNIFQIRQVHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           +NI   R+VHA + A   L N ++++ +++ +Y+   + +D+  +F+  KE+D   ++ +
Sbjct: 106 KNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNAL 165

Query: 130 VGGFSKVADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           + G+S+ A F +    F E +    +  D++TLP V +AC    D+ +G  +H + LK+G
Sbjct: 166 LSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAG 225

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------------GANK 235
              D FV  AL+ MY KC  ++ A ++F+ M  R+LV+W  ++             G  K
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 236 FLL---------DVILGTAVIDMYAKCGSI------------------------------ 256
            LL         DV     VI   A  G +                              
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS 345

Query: 257 -----DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFV 310
                  AR +FD    KNV+SW+ +I  Y   G  +   +L   M    +V  N +T +
Sbjct: 346 KCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVL 405

Query: 311 SLLYACS 317
           ++L ACS
Sbjct: 406 NVLPACS 412



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 119/281 (42%), Gaps = 61/281 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
            +  ++RAC   K+I +GR +H +V  S  L  D  +   ++ MY+ C    D+R +FD 
Sbjct: 94  AIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDA 153

Query: 219 MPTRDLVTWTVMIGA---NKFLLDVI---------------------------------- 241
              +DL  +  ++     N    D I                                  
Sbjct: 154 AKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVEL 213

Query: 242 ------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                             +G A+I MY KCG ++SA ++F+ MR +N++SW++++ A   
Sbjct: 214 GEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSE 273

Query: 284 HGQGKKALDLFPMMLSSR---VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           +G   +   +F  +L S    ++P+  T V+++ AC+  G V  G+ +   +     +  
Sbjct: 274 NGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-VVHGLAFKLGITE 332

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +V     +VD+  + G L EA  L + M+  K+   W  ++
Sbjct: 333 EVTVNNSLVDMYSKCGYLGEARALFD-MNGGKNVVSWNTII 372



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 13/158 (8%)

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
           ++K   DV+L T +I MY+ CGS   +R +FD  ++K++  ++A+++ Y  +   + A+ 
Sbjct: 121 SHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAIS 180

Query: 293 LFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEG-----LRLFSSMWDDFAVRPDVKHYT 346
           LF  +LS+  L P+  T   +  AC+    VE G     L L +  + D  V        
Sbjct: 181 LFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVG------N 234

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
            ++ + G+ G ++ A+K+ E+M   ++   W +++ AC
Sbjct: 235 ALIAMYGKCGFVESAVKVFETMR-NRNLVSWNSVMYAC 271


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/577 (35%), Positives = 323/577 (55%), Gaps = 58/577 (10%)

Query: 57  SVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           +  P+ + S + +C   R++   R +HA +       ++ + N L+++Y    A+ DA  
Sbjct: 61  AATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARR 120

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+GM  RD  SW+ ++ G+++              +R   + + +T   +++A      
Sbjct: 121 VFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASAS 180

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
             +G  IH + +K     D +V +AL+DMYA+C  +D A  +FDQ+ +++ V+W  +I  
Sbjct: 181 SGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAG 240

Query: 234 -------------------NKF---------LLDVILG---------------------- 243
                              N F         +   I G                      
Sbjct: 241 FARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLS 300

Query: 244 ----TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                 ++DMYAK GS+  AR++FDR+ +K+V++W++M+ A+  +G G++A+  F  M  
Sbjct: 301 AFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRK 360

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             V  N+ITF+S+L ACSH GLV+EG + F  M  ++ + P++ HY  +VDLLGRAG L+
Sbjct: 361 CGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEYNLEPEIDHYVTVVDLLGRAGLLN 419

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +AL  I  M ++    +WGALLG+CR+HKN  + + AA  + E  P + G  VLL N+YA
Sbjct: 420 DALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYA 479

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
           + G+W   A++R +M    +KK P  +W+E+EN +H F   D THP+SEEIY+    +S 
Sbjct: 480 STGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISI 539

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           ++  AGY+P+T++ L  VDE+ +   L  HSEK+A+AF LI  P G  IRIMKN+R+CGD
Sbjct: 540 QIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGD 599

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           CHS  +++S + +R I+VRD NRFHHF  G+CSC DY
Sbjct: 600 CHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/487 (42%), Positives = 288/487 (59%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L+  N +++ +A    +  A  LF+   ERD +SWS M+  ++K          F E  
Sbjct: 201 DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQ 260

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              +  D  T+  V+ AC D   + MG++IH                       +C    
Sbjct: 261 LANVLPDKVTMVSVLSACGDVGALGMGKMIH-----------------------EC---- 293

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                               I  N+  +D+ LGT+++DMYAKCG ID++  +F+ M  ++
Sbjct: 294 --------------------IERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRD 333

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V +WSAMI     HG G+ ALD F  M+S  + PN +TF+ +L ACSH GLV+EG   F+
Sbjct: 334 VFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFT 393

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM   + V P ++HY C+VD+LGRAGRL EA++LI+SM    D  +W ALLGACRI+KNV
Sbjct: 394 SMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNV 453

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           ++AE A  +LLE +P   G+YVLLSN+Y+ A  W  V  +R +M    ++K+PG + IEV
Sbjct: 454 EIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEV 513

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +N +H+F  GD +HP+S++I RML  ++ +L+  GY P T   L D DE+ K   L  HS
Sbjct: 514 DNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHS 573

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGL++T  G+ IRI+KNLRVC DCH  IK +S   +R IIVRD NRFHHF  G+
Sbjct: 574 EKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGS 633

Query: 571 CSCRDYW 577
           CSC+DYW
Sbjct: 634 CSCKDYW 640



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/355 (31%), Positives = 180/355 (50%), Gaps = 27/355 (7%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY-IYALHKA--LTDAHALFNG 117
           K  +S L +   + QI Q+HA I+      N  V  KLL  ++A   A  L  A ++F+ 
Sbjct: 4   KKVMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDE 63

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ----LDSYTLPFVIRACRDRKD 173
           +   D+  W+ M+  +       N  E+   F +   Q    +DSY+L  VI+AC   KD
Sbjct: 64  IPSPDTFIWNTMIRAYLNSQ---NPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKD 120

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG- 232
              G+ +H  VLK GL  D FV  AL++MYAK   I+ AR + D+M   DLV + V++  
Sbjct: 121 PGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAE 180

Query: 233 ---------ANKFL-----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                    A+         D++    +I  +A  G + +A+++FDR  ++++ISWS+MI
Sbjct: 181 YVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMI 240

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           AAY    Q  +AL LF  M  + VLP+++T VS+L AC   G +  G ++     +   +
Sbjct: 241 AAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMG-KMIHECIERNRI 299

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             D+K  T +VD+  + G +D +L++   M+  +D   W A++     H   +LA
Sbjct: 300 EIDLKLGTSLVDMYAKCGDIDNSLRVFNGMN-NRDVFAWSAMIMGLANHGFGELA 353


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 324/584 (55%), Gaps = 85/584 (14%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA I   G  +N  V   L+  Y++   +  A  +F+G+  +D VSW+ MV  F++   
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F    + F +    G + +++T   V +AC   +   +G+ +H   LKS  ++D +V  A
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------AN 234
           L+D+Y K   IDDAR+ F+++P +D++ W+ MI                          N
Sbjct: 281 LLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340

Query: 235 KFLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFD 264
           +F                                DV +  A++D+YAKCG ++++ E+F 
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFA 400

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL--------------------- 303
               +N ++W+ +I  +   G G+KAL LF  ML  RV                      
Sbjct: 401 ESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP 460

Query: 304 ----------PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
                     P+++TFV +L AC++ GL+++G   F+SM  D  + P ++HYTCMV LLG
Sbjct: 461 GLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLG 520

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           R G LD+A+KLI+ +  +    +W ALLGAC IH +++L  ++A+ +LE +PQ+   +VL
Sbjct: 521 RGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVL 580

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           LSN+YA A RW +VA +R  M R+ +KK PG +WIE +  +H F+VGD++HP+   I  M
Sbjct: 581 LSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGM 640

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           L  L  K + AGYIP+ N  L DV++E K   L+ HSE+LA++FG+I TP G+ IRIMKN
Sbjct: 641 LEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKN 700

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LR+C DCH+ IK +S + +R I+VRD NRFHHF+ G CSC DYW
Sbjct: 701 LRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 164/362 (45%), Gaps = 62/362 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H +I+  G   +L   N LL +Y     L DA  LF+ M ER+++S+  ++ G+++ 
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAES 117

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F+   E F    R G +L+ +    +++         +G  IH  + K G + + FV 
Sbjct: 118 VRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVG 177

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+D Y+ C  +D AR++FD +  +D+V+WT M+                         
Sbjct: 178 TALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFK 237

Query: 234 -NKF----LLDVILGTAVID--------------------------MYAKCGSIDSAREI 262
            N F    +    LG    D                          +Y K G ID AR  
Sbjct: 238 PNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRA 297

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ + +K+VI WS MIA Y    Q K+A+++F  M  + VLPN+ TF S+L AC+     
Sbjct: 298 FEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACA----T 353

Query: 323 EEGLRLFSSMW---DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            EGL L + +        +  DV     ++D+  + GR++ +++L  + S  +++  W  
Sbjct: 354 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELF-AESPHRNDVTWNT 412

Query: 380 LL 381
           ++
Sbjct: 413 VI 414



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 120/284 (42%), Gaps = 60/284 (21%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + +S+     ++ C  + +   G+ +H  +LK G  +D F    L++MY K   + DA +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 215 LFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL-------- 242
           LFD+MP R+ +++  +I                          N F+   IL        
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDC 154

Query: 243 ----------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                 GTA+ID Y+ CG +D ARE+FD +  K+++SW+ M+  
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           +  +   K+AL LF  M      PN  TF S+  AC      + G  +          R 
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCA---LKSRY 271

Query: 341 DVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++  Y    ++DL  ++G +D+A +  E +  +KD   W  ++ 
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARRAFEEIP-KKDVIPWSFMIA 314


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 302/557 (54%), Gaps = 56/557 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA  V  G + ++ V      +Y   +   DA  LF+ + ER+  +W+  +      
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTD 187

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E F EF R G Q +S T    + AC D   + +G  +H +V +SG D D  V 
Sbjct: 188 GRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVY 247

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
             L+D Y KCK I  +  +F +M  ++ V+W  ++ A                       
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVE 307

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            + F++  +L                              G+A++DMY KCG I+ + + 
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQA 367

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTG 320
           FD M +KN+++ +++I  Y + GQ   AL LF  M        PN +TFVSLL ACS  G
Sbjct: 368 FDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAG 427

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE G+++F SM   + + P  +HY+C+VD+LGRAG +++A + I+ M ++    +WGAL
Sbjct: 428 AVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGAL 487

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
             ACR+H    L  +AA++L +  P++ G++VLLSN +A AGRW +   +R+ M    +K
Sbjct: 488 QNACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIK 547

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++WI V+N++H F   D +H  ++EI  ML  L  K+E AGY PD    L+D++EE
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEE 607

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   +  HSEKLA+AFGL+A P    IRI KNLR+CGDCHSF K VS   +R IIVRD 
Sbjct: 608 EKAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 667

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFH F+ G CSC+DYW
Sbjct: 668 NRFHRFKDGICSCKDYW 684



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 178/418 (42%), Gaps = 64/418 (15%)

Query: 77  RQVHAQIVAGGTLTNL---IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           R VHA+IV   TL +     +AN L+ +Y+       A  +      R+ VSW+ +V G 
Sbjct: 26  RVVHARIVK--TLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGL 83

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           ++   F      F E  R G+  + +T P V +A    +  V G+ IH + +K G  +D 
Sbjct: 84  AQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDV 143

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--------------------- 232
           FV  +  DMY K ++ DDAR+LFD++P R+L TW   I                      
Sbjct: 144 FVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRI 203

Query: 233 ----------------ANKFLLD-----------------VILGTAVIDMYAKCGSIDSA 259
                           ++  LLD                 V +   +ID Y KC  I S+
Sbjct: 204 GGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSS 263

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             IF  M  KN +SW +++AAY  + + +KA  L+       V  +     S+L AC+  
Sbjct: 264 EIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGM 323

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
             +E G R   +      V  ++   + +VD+ G+ G ++++ +  + M  EK+     +
Sbjct: 324 AGLELG-RSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTLNS 381

Query: 380 LLGACRIHKNVDLAEMAAKSLLER---QPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
           L+G       VD+A    + +  R      N   +V L +  + AG  ++  KI D M
Sbjct: 382 LIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSM 439



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 14/213 (6%)

Query: 62  FFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F ISS+LS C  +  +   R +HA  V      N+ V + L+ +Y     + D+   F+ 
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDE 370

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CGMQLDSYTLPFVIRACRDRKDIV 175
           M E++ V+ + ++GG++           F +     CG   +  T   ++ AC     + 
Sbjct: 371 MPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVE 430

Query: 176 MGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVM 230
            G  I D  +KS   I+     + C  +VDM  +  +++ A +   +MP +  ++ W  +
Sbjct: 431 NGMKIFD-SMKSTYGIEPGAEHYSC--IVDMLGRAGMVEQAFEFIKKMPIKPTISVWGAL 487

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
             A +      LG    +   K    DS   + 
Sbjct: 488 QNACRMHGKPHLGILAAENLFKLDPKDSGNHVL 520


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 319/573 (55%), Gaps = 58/573 (10%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S++ +C ++  I   +Q+H   +  G  + L V + L  +Y+   A+ DA  +F  M 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D VSW+ M+ G+SK+ +F      F++ I   + +D + L   + AC   K    GR 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD-QMPTRDLVTWTVMIGA----- 233
           +H  V+K G + D FV  AL DMY+K   ++ A  +F      R++V++T +I       
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 234 -------------------NKFLL------------------------------DVILGT 244
                              N+F                                D  + +
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            ++DMY KCG ++ A + FD +     I+W+++++ +G HG GK A+ +F  M+   V P
Sbjct: 349 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 408

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N ITF+SLL  CSH GLVEEGL  F SM   + V P  +HY+C++DLLGRAGRL EA + 
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEF 468

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I  M  E +   W + LGACRIH + ++ ++AA+ L++ +P+N G  VLLSN+YAN  +W
Sbjct: 469 INRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQW 528

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           +DV  +R  M    +KK+PG++W++V  K H F   D +HP+   IY  L TL ++++ A
Sbjct: 529 EDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAA 588

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+P T+    D+D+ +K   L+ HSE++A+AF LI+ P G  I + KNLRVC DCHS I
Sbjct: 589 GYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAI 648

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S +T R IIVRD +RFHHF  G+CSC DYW
Sbjct: 649 KFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 170/361 (47%), Gaps = 59/361 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA ++  G      + N L+ +Y+    L  A  LF+ M +R+ VSW+ M+ G S+ 
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           + F     TF     CG     +     IRAC     I MG+ +H + LK G+  + FV 
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------------------- 231
           + L DMY+KC  + DA ++F++MP +D V+WT MI                         
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 232 -------------GANK----------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                        GA K                F  D+ +G A+ DMY+K G ++SA  +
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 263 FDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F    + +NV+S++ +I  Y    Q +K L +F  +    + PN  TF SL+ AC++   
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 322 VEEGLRLFSS-MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           +E+G +L +  M  +F   P V   + +VD+ G+ G L++A++  + +  +  E  W +L
Sbjct: 325 LEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSL 381

Query: 381 L 381
           +
Sbjct: 382 V 382



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 55/262 (20%)

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           M  D+  L  VI+     K +  G+ +H +++ +G     F+   LV+MY+KC  +D A 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 214 QLFDQMPTRDLVTWTVMIGA----NKFLLDV-------ILG--------TAVIDMYAKCG 254
           +LFD MP R+LV+WT MI      +KF   +       I G        ++ I   A  G
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 255 SIDSARE-----------------------------------IFDRMRQKNVISWSAMIA 279
           SI+  ++                                   +F+ M  K+ +SW+AMI 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y   G+ ++AL  F  M+   V  ++    S L AC      + G  + SS+       
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFE 239

Query: 340 PDVKHYTCMVDLLGRAGRLDEA 361
            D+     + D+  +AG ++ A
Sbjct: 240 SDIFVGNALTDMYSKAGDMESA 261


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 316/575 (54%), Gaps = 56/575 (9%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F  +L +C  +  +     V  +    G   ++ V + +L +YA   A+ DA  +F
Sbjct: 102 DSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVF 161

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M++RD V+WS MV GF      +   E +    R G++ D   +  V++AC    D  
Sbjct: 162 DRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDAR 221

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV------ 229
           MG  +H  +L+  + +D  +  +LVDMYAK  + D AR++F+ MP R+ V+W+       
Sbjct: 222 MGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLA 281

Query: 230 --------------------------MIGA---------------------NKFLLDVIL 242
                                     ++GA                         LD ++
Sbjct: 282 QYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMV 341

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTAVIDMY+KCGS+ SA+ +FD++  +++ISW+ MIA  G HG+G+ AL LF  M  + V
Sbjct: 342 GTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEV 401

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+  TF SLL A SH+GLVEEG   F+ M +++ + P  KH  C+VDLL R+G ++EA 
Sbjct: 402 RPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEAN 461

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            L+ S+  +    +  ALL  C  +  ++L E  A+ +LE QP + G   L+SN+YA A 
Sbjct: 462 GLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAK 521

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
            W  V ++R LM     KK PG + IE+   +H F + D +HPQ  +I +M++ L  ++ 
Sbjct: 522 NWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMR 581

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GYIP T F  HD++E VK   L  HSE+LA AFGL+ T  GT + ++KNLRVCGDCH 
Sbjct: 582 KMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHD 641

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK++S I  R I+VRDA RFHHF+ GACSC DYW
Sbjct: 642 AIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 165/386 (42%), Gaps = 61/386 (15%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQ-IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           DP+     L SC  +  + ++HA  IV+     + I+++ L   YA    L  A +    
Sbjct: 2   DPRRLRRLLSSCAALRTLTRLHALLIVSSSASCHHILSSCLATAYARAGDLAAAESTLAT 61

Query: 118 MKERDSV--SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
                S   +W+ ++   S+ A        FR       + DS T    + AC    D+ 
Sbjct: 62  APTSPSSIPAWNALLAAHSRGASPHEALRVFRALPPAA-RPDSTTFTLALSACARLGDLA 120

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--- 232
            G ++ D    +G   D FVC++++++YAKC  +DDA ++FD+M  RD VTW+ M+    
Sbjct: 121 TGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFV 180

Query: 233 ---------------------ANKFLL-----------DVILGTAV-------------- 246
                                A++ ++           D  +G +V              
Sbjct: 181 NAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVV 240

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                +DMYAK G  D AR +F+ M  +N +SWSA+I+    +G   +AL LF MM  S 
Sbjct: 241 ISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSG 300

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + PN    V  L ACS  GL++ G  +   +     +  D    T ++D+  + G L  A
Sbjct: 301 LHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLEL--DRMVGTAVIDMYSKCGSLSSA 358

Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
             L + + V +D   W  ++  C  H
Sbjct: 359 QMLFDKV-VSRDLISWNVMIACCGAH 383


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 330/569 (57%), Gaps = 52/569 (9%)

Query: 61  KFFISSLLS-CRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHA 113
           ++ +SS++S C  +  +R   Q+H+  +  G  ++  V+  L+ +YA   + +A+  A+ 
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANK 313

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           +F  M + D +SW+ ++ G+ +     N     F E +   ++ +  T   ++++C    
Sbjct: 314 VFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASIS 373

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV------- 225
           D   GR +H  V+KS       V  ALV MYA+   +++AR++F+Q+  R ++       
Sbjct: 374 DHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGR 433

Query: 226 ------------------TWTVMIGANK-------------------FLLDVILGTAVID 248
                             T+  +I A                     F  D  +  +++ 
Sbjct: 434 DFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVS 493

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY++CG ++ A   F+ ++ +NVISW++MI+    HG  ++AL LF  M+ + V PN +T
Sbjct: 494 MYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVT 553

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           ++++L ACSH GLV EG   F SM  D  + P ++HY CMVDLL R+G + EAL+ I  M
Sbjct: 554 YIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEM 613

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            ++ D  +W  LLGACR H N+++ E+ AK+++E +P++P  YVLLSN+YA+AG W +VA
Sbjct: 614 PLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVA 673

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           +IR  M    L K  G +W+EVEN  H+F  GD++HP++++IY  L TL  +++  GY+P
Sbjct: 674 RIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVP 733

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           DT+  LHD+ +E+K   L  HSEK+A+AFGLI T     IRI KNLRVC DCHS IK++S
Sbjct: 734 DTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMS 793

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
             TRR II+RD+NRFH  + G CSC +YW
Sbjct: 794 KATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 62/303 (20%)

Query: 77  RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKE-RDSVSWSVMVGGFS 134
           R +H +++ G  L  + +VAN LL +Y+   A+  A  +F+GM+  RD VSW+ M    +
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL-KSGL-DID 192
           +            E +  G+  ++YTL     AC   +   +   +   ++ K GL   D
Sbjct: 128 RNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTD 187

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVI- 241
             V +AL+DM A+   +  AR++FD +  + +V WT++I           A +  LD + 
Sbjct: 188 VAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE 247

Query: 242 -------------------LGT------------------------AVIDMYAKCG---S 255
                              LG+                         ++DMYAK     +
Sbjct: 248 DGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQA 307

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           +D A ++F+RM + +VISW+A+I+ Y   G Q  K + LF  ML+  + PN IT+ S+L 
Sbjct: 308 MDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILK 367

Query: 315 ACS 317
           +C+
Sbjct: 368 SCA 370



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 150/323 (46%), Gaps = 51/323 (15%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           T++ V + L+ + A +  L  A  +F+G+ E+  V W++++  + +        E F +F
Sbjct: 186 TDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDF 245

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV- 208
           +  G + D YT+  +I AC +   + +G  +H + L+ GL  D  V   LVDMYAK  + 
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIG 305

Query: 209 --IDDARQLFDQMPTRDLVTWTVMIGA--------NKF--LLDVILGTAV-------IDM 249
             +D A ++F++MP  D+++WT +I          NK   L   +L  ++         +
Sbjct: 306 QAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSI 365

Query: 250 YAKCGSI---DSAREIFDRMRQKNVIS----WSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
              C SI   DS R++   + + N  S     +A+++ Y   G  ++A  +F  +    +
Sbjct: 366 LKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSM 425

Query: 303 LP-----------NRI----------TFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRP 340
           +P           +RI          TF SL+ A +  G++ +G +L + S+   F    
Sbjct: 426 IPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDR 485

Query: 341 DVKHYTCMVDLLGRAGRLDEALK 363
            V +   +V +  R G L++A +
Sbjct: 486 FVSN--SLVSMYSRCGYLEDACR 506



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 124/274 (45%), Gaps = 71/274 (25%)

Query: 173 DIVMGRLIHDIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQM-PTRDLVTWT-- 228
           D+ +GR +H  +L+  L D D  V  +L+ +Y++C  +  AR +FD M   RD+V+WT  
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 229 --------------VMIG--------ANKFLL---------------------------- 238
                         ++IG         N + L                            
Sbjct: 123 ASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               DV +G+A+IDM A+ G + SAR++FD + +K V+ W+ +I+ Y      ++A++LF
Sbjct: 183 LWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF 242

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVD 350
              L     P+R T  S++ AC+  G V  GL+L S      A+R  +    C    +VD
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHS-----LALRMGLASDACVSCGLVD 297

Query: 351 LLGRAG---RLDEALKLIESMSVEKDEGLWGALL 381
           +  ++     +D A K+ E M  + D   W AL+
Sbjct: 298 MYAKSNIGQAMDYANKVFERMP-KNDVISWTALI 330


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 319/573 (55%), Gaps = 58/573 (10%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S++ +C ++  I   +Q+H   +  G  + L V + L  +Y+   A+ DA  +F  M 
Sbjct: 44  FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 103

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D VSW+ M+ G+SK+ +F      F++ I   + +D + L   + AC   K    GR 
Sbjct: 104 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 163

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD-QMPTRDLVTWTVMIGA----- 233
           +H  V+K G + D FV  AL DMY+K   ++ A  +F      R++V++T +I       
Sbjct: 164 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 223

Query: 234 -------------------NKFLL------------------------------DVILGT 244
                              N+F                                D  + +
Sbjct: 224 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 283

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            ++DMY KCG ++ A + FD +     I+W+++++ +G HG GK A+ +F  M+   V P
Sbjct: 284 ILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKP 343

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N ITF+SLL  CSH GLVEEGL  F SM   + V P  +HY+C++DLLGRAGRL EA + 
Sbjct: 344 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEF 403

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I  M  E +   W + LGACRIH + ++ ++AA+ L++ +P+N G  VLLSN+YAN  +W
Sbjct: 404 INRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQW 463

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           +DV  +R  M    +KK+PG++W++V  K H F   D +HP+   IY  L TL ++++ A
Sbjct: 464 EDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAA 523

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+P T+    D+D+ +K   L+ HSE++A+AF LI+ P G  I + KNLRVC DCHS I
Sbjct: 524 GYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAI 583

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S +T R IIVRD +RFHHF  G+CSC DYW
Sbjct: 584 KFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 616



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 150/320 (46%), Gaps = 59/320 (18%)

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M +R+ VSW+ M+ G S+ + F     TF     CG     +     IRAC     I MG
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
           + +H + LK G+  + FV + L DMY+KC  + DA ++F++MP +D V+WT MI      
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 232 --------------------------------GANK----------------FLLDVILG 243
                                           GA K                F  D+ +G
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            A+ DMY+K G ++SA  +F    + +NV+S++ +I  Y    Q +K L +F  +    +
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSS-MWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            PN  TF SL+ AC++   +E+G +L +  M  +F   P V   + +VD+ G+ G L++A
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEQA 298

Query: 362 LKLIESMSVEKDEGLWGALL 381
           ++  + +  +  E  W +L+
Sbjct: 299 IQAFDEIG-DPTEIAWNSLV 317


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/614 (35%), Positives = 325/614 (52%), Gaps = 90/614 (14%)

Query: 54  FTRSV--DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA- 107
           FT  +  DP  F   L SC    ++F  +QVH+ I+  G   +  ++N LL  Y+     
Sbjct: 54  FTSEIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQF 113

Query: 108 ------------------------------LTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
                                         L  A  LF+ M ER+  +W+ M+ G ++  
Sbjct: 114 KSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFE 173

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                   F+E    G   D +TL  V+R C   + ++ G+ +H  +LK G ++   V +
Sbjct: 174 FNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGS 233

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTR----------------------------------- 222
           +L  MY K   + D  +L   MP R                                   
Sbjct: 234 SLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRP 293

Query: 223 DLVTWTVMIGANKFLLDVILG-------------------TAVIDMYAKCGSIDSAREIF 263
           D +T+  ++ A   L  +  G                   +++I MY++ G ++ + + F
Sbjct: 294 DKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAF 353

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
                 +V+ WS+MIAAYG+HG+G++AL+LF  M   ++  N +TF+SLLYACSH+GL E
Sbjct: 354 VDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKE 413

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +G   F  M   + ++P ++HYTC+VDLLGRAGRL+EA  +I SM V+ D  +W  LL A
Sbjct: 414 KGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAA 473

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           C++HK  ++AE  ++ +++  P +   YVLLSN++A+A  W +V++IR  M  R ++K P
Sbjct: 474 CKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEP 533

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +W+E++N +HQFS+GD +HPQ  EI   L  L  +L+  GY+P+    LHD+D E K 
Sbjct: 534 GISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKE 593

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
            NL  HSEK AIAF L+ T E   IR+MKNLRVC DCH+ IK +S I  R IIVRDA+RF
Sbjct: 594 YNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRF 653

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC +YW
Sbjct: 654 HHFKDGECSCGNYW 667


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/531 (41%), Positives = 295/531 (55%), Gaps = 64/531 (12%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIV--ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           N+   + +HA ++      ++ V     LL +YA    L  A  LFNG+ ++  VSW+ M
Sbjct: 240 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 299

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + G         C  + R                 +   R   D    R           
Sbjct: 300 IAG---------CIRSNR-----------------LEEARALFDSTQNR----------- 322

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQM------PTR----------------DLVTW 227
             D  +  A++  YA+   ID A  LFDQM      PT+                DL  W
Sbjct: 323 --DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKW 380

Query: 228 T-VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
               I   +  +D IL TA++DMYAKCG I++A  +F     +++  W+A+I  +  HG 
Sbjct: 381 VHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGY 440

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           G++ALD+F  M    V PN ITF+ LL+ACSH GLV EG +LF  M   F + P ++HY 
Sbjct: 441 GEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYG 500

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           CMVDLLGRAG LDEA ++I+SM ++ +  +WGAL+ ACR+HKN  L E+AA  LLE +P+
Sbjct: 501 CMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPE 560

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           N G+ VL+SN+YA A RW D A +R  M    +KK PG + IEV   +H+F +GD +HPQ
Sbjct: 561 NCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQ 620

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
              I  ML  +  KL  AGY+PDT+  L ++DEE K   L  HSEKLA+AFGLI+T   T
Sbjct: 621 IRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPST 680

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IRI+KNLRVC DCH+  K +S I  RVIIVRD NRFHHF  G CSC DYW
Sbjct: 681 PIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 169/346 (48%), Gaps = 23/346 (6%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H  ++  G   ++ V N L+ +Y     +  A  +F+ M ERD VSWS M+   S+ 
Sbjct: 144 KEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRN 203

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV- 195
            +F    E  RE     ++     +  ++    D  ++ MG+ +H  V+++  +    V 
Sbjct: 204 KEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVP 263

Query: 196 -CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
              AL+DMYAKC  +  ARQLF+ +  + +V+WT MI                    +  
Sbjct: 264 TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG----------------CIRSN 307

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ++ AR +FD  + ++V+ W+AM++AY       +A +LF  M +S V P ++T VSLL 
Sbjct: 308 RLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLS 367

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL-IESMSVEKD 373
            C+  G ++ G +   S  D   V  D    T +VD+  + G ++ A +L IE++S  +D
Sbjct: 368 LCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAIS--RD 424

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             +W A++    +H   + A +   + +ERQ   P     +  ++A
Sbjct: 425 ICMWNAIITGFAMHGYGEEA-LDIFAEMERQGVKPNDITFIGLLHA 469



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 58/360 (16%)

Query: 30  LEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL 89
           L+ H H     NP  P+Q  P         P     S L      Q +Q+HA I+     
Sbjct: 26  LQHHPHSTLKFNP-TPLQTPP-------TSPSQHDLSTLE-----QTKQIHAHII----- 67

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
                  K  + +AL   L D     +G+    S  W+ ++  ++K     N    + + 
Sbjct: 68  -------KTHFHHALQIPLND---FPSGLSP--SAQWNFVITSYTKRNQPRNALNVYAQL 115

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
            +   ++D++  P V++AC       +G+ IH  VLK GLD D FV  AL+ MY +C  +
Sbjct: 116 RKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACV 175

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI-FDRMRQ 268
           + AR +FD+M  RD+V+W+ MI +       +      DM     +++  RE+ F ++R 
Sbjct: 176 EYARLVFDKMMERDVVSWSTMIRS-------LSRNKEFDM-----ALELIREMNFMQVRP 223

Query: 269 KNV--ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV---LPNRITFVSLLYACSHTGLVE 323
             V  +S   + A       G KA+  + +  S+     +P     + +   C H GL  
Sbjct: 224 SEVAMVSMVNLFADTANMRMG-KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLAR 282

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +   LF+ +      +  V  +T M+    R+ RL+EA  L +S +  +D  +W A+L A
Sbjct: 283 Q---LFNGL-----TQKTVVSWTAMIAGCIRSNRLEEARALFDS-TQNRDVMIWTAMLSA 333


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 310/561 (55%), Gaps = 60/561 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H   V  G     +V N ++ +Y+    + +A  +F  M  R+ +SW+ M+ G++  
Sbjct: 93  RQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVA 152

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQF 194
                    F++    G  LD +T    ++AC D   I  G  IH  ++  G    ++  
Sbjct: 153 GFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTA 212

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------------------- 231
           V  AL+D+Y KC  +  AR++F  +  + +++WT +I                       
Sbjct: 213 VAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESS 272

Query: 232 -GANKFLLDVILG------------------------------TAVIDMYAKCGSIDSAR 260
              + F+L  ++G                               +++DMY KCG I+ A 
Sbjct: 273 IQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAE 332

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F  M  +NVISW+ MI  YG HG GK+A+ LF  M      P+ +T++++L  CSH+G
Sbjct: 333 RLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSG 392

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           LVE+G   FS +     ++  V+HY CMVDLLGRAGRL EA  L++SM +E + G+W  L
Sbjct: 393 LVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTL 452

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L ACR+H +++L +     LL    +NP +YV++SN+YA+AG W++  +IR+L+  ++LK
Sbjct: 453 LSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLK 512

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVDE 499
           K  G +W+E++ ++H F  GD THP +E+I+ +L  +  ++ E  GY+    + LHDV+E
Sbjct: 513 KEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEE 572

Query: 500 EVKVGNLYSHSEKLAIAFGLI--ATPEGTH-IRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           E K+ NL  HSEKLAI   L+     EG   IR+ KNLRVCGDCH FIK +S I R V +
Sbjct: 573 ESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFV 632

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDANRFH FE G CSCRDYW
Sbjct: 633 VRDANRFHRFEDGLCSCRDYW 653



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 149/338 (44%), Gaps = 65/338 (19%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L+++N L+ +Y     L  A  +F+ M +R+ VSW+ ++ G  +  + +     F +  
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G++ + +T    ++AC     + +GR IHDI +K+G D+   V  +++DMY+KC  I+
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRIN 125

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKF-------------------LLDVILGTAVIDMYA 251
           +A  +F+ MP R+L++W  MI                         LD    T+ +   +
Sbjct: 126 EAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACS 185

Query: 252 KCGSIDSAREI-------------------------------------FDRMRQKNVISW 274
             G+I    +I                                     F  + +K+VISW
Sbjct: 186 DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISW 245

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +A+I  Y   G   ++++LF  +  S +  +     S++   +   LV++G ++ +    
Sbjct: 246 TALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHA---- 301

Query: 335 DFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            FA++     D+     ++D+  + G ++EA +L   M
Sbjct: 302 -FAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEM 338



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D++L   +I MY KCG +  A ++FDRM ++NV+SW+A++  +  +G   ++L LF 
Sbjct: 3   FGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFS 62

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----MVDL 351
            M  S V PN  TF + L AC     ++ G ++      D  V+            ++D+
Sbjct: 63  KMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQI-----HDICVKTGFDMVNVVGNSIIDM 117

Query: 352 LGRAGRLDEALKLIESMSV 370
             + GR++EA  + E M V
Sbjct: 118 YSKCGRINEAACMFEVMPV 136


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 314/557 (56%), Gaps = 57/557 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGGFS 134
           R VHAQ+   G   ++ V N L+ +YA  + L  A  +F G+   ER  VSW+ +V  ++
Sbjct: 139 RFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +  + +   E F +  +  ++ D   L  V+ A    +D+  GR IH  V+K GL+ +  
Sbjct: 199 QNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPD 258

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-------------------------------- 222
           +  +L  MYAKC  +  A+ LFD+M +                                 
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKD 318

Query: 223 ---DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAR 260
              D ++ T  I A                   + +  DV + +A+IDM+AKCGS++ AR
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FDR   ++V+ WSAMI  YG HGQ ++A+ L+  M    V PN +TF+ LL AC+H+G
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           +V EG   F+ M  D  + P  +HY C++DLLGRAG LD+A ++I+ M V+    +WGAL
Sbjct: 439 MVREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGAL 497

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L AC+ H++V+L + AA+ L    P N GHYV LSN+YA A  W  VA++R  M  + L 
Sbjct: 498 LSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLN 557

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G +W+EV  ++  F VGD +HP+ EEI R +  +  +L+  G++ + +  LHD+++E
Sbjct: 558 KDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDE 617

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
                L SHSE++ IA+GLI+TP+GT +RI KNLR C +CH+  K +S +  R I+VRD 
Sbjct: 618 EAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDT 677

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF+ G CSC DYW
Sbjct: 678 NRFHHFKDGVCSCGDYW 694



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 190/409 (46%), Gaps = 59/409 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F+ S + S  +  Q+RQ+HA+++  G   +  +  KL++  + +  +T A  +F+ +   
Sbjct: 23  FYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRP 82

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
               W+ ++ G+S+   F +    + +     +  DS+T P +++AC     + MGR +H
Sbjct: 83  QVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVH 142

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGA------ 233
             V + G + D FV   L+ +YAKC+ +  AR +F+   +P R +V+WT ++ A      
Sbjct: 143 AQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202

Query: 234 ---------------------------NKF--LLDVILG----TAVIDM----------- 249
                                      N F  L D+  G     +V+ M           
Sbjct: 203 PVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLIS 262

Query: 250 ----YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
               YAKCG + +A+ +FD+M+  N+I W+AMI+ Y  +G  K A+DLF  M++  V P+
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPD 322

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            I+  S + AC+  G +E+  R           R DV   + ++D+  + G ++ A  + 
Sbjct: 323 TISITSAISACAQVGSLEQA-RWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVF 381

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           +  ++++D  +W A++    +H     A ++    +ER   +P     L
Sbjct: 382 DR-TLDRDVVVWSAMIVGYGLHGQAREA-ISLYRAMERDGVHPNDVTFL 428


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/568 (36%), Positives = 312/568 (54%), Gaps = 57/568 (10%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C    QI    Q+H+  +  G  +++ V+  L+ +Y+ +  L  A  +   +++RD 
Sbjct: 353 LRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDV 412

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+ G+ +         TF+E   CG+  D+  L     AC   K +  G  IH  
Sbjct: 413 VSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHAR 472

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
           V  SG   D  +   LV++YA+C   ++A  LF ++  +D +TW  +I            
Sbjct: 473 VYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQA 532

Query: 234 --------------NKF-----------LLDVILG-------------------TAVIDM 249
                         N F           L D+  G                    A+I +
Sbjct: 533 LMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISL 592

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y KCGSI+ A+ IF  M  +N +SW+ +I +   HG+G +ALDLF  M    + PN +TF
Sbjct: 593 YGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTF 652

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           + +L ACSH GLVEEGL  F SM + + + P   HY C+VD+LGRAG+LD A + ++ M 
Sbjct: 653 IGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMP 712

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           +  +  +W  LL AC++HKN+++ E+AAK LLE +P +   YVLLSN YA  G+W +  +
Sbjct: 713 ITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 772

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R +M  R ++K PG +WIEV+N +H F VGD  HP S++IY+ L  L+++L   GY  +
Sbjct: 773 VRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQE 832

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
                H+ ++E K    + HSEKLA+AFGL+  P    +R++KNLRVC DCHS++K  S 
Sbjct: 833 NPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSE 892

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +TRR I++RD  RFHHF  G+CSC DYW
Sbjct: 893 VTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 60/362 (16%)

Query: 34  GHEQNPMNPRVPMQMG---PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT 90
           GH +  +     MQ+    PDC    S+     +++  S  ++ + +Q+H+ ++  G   
Sbjct: 224 GHGECALQIFDEMQLSGLRPDCVTVASL-----LAACASVGDLQKGKQLHSYLLKAGMSF 278

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           + I    LL +Y     +  AH +FN     + V W++M+  + +++D    FE F +  
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+  + +T P ++R C     I +G  IH + +K+G + D +V   L+DMY+K   +D
Sbjct: 339 ATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLD 398

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR++ + +  RD+V+WT M                                        
Sbjct: 399 KARKILEMLEKRDVVSWTSM---------------------------------------- 418

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
                  IA Y  H   ++AL  F  M    V P+ I   S   AC+    + +GL++ +
Sbjct: 419 -------IAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHA 471

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL---GACRIH 387
            ++       D+  +  +V+L  R GR +EA  L   +   KDE  W  L+   G  R++
Sbjct: 472 RVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIE-HKDEITWNGLISGFGQSRLY 529

Query: 388 KN 389
           K 
Sbjct: 530 KQ 531



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 192/449 (42%), Gaps = 74/449 (16%)

Query: 39  PMNPRVPMQM-GPDCQFTRSVDPKFFISSLLSCRNIFQ----IRQVHAQIVAGGTLTNLI 93
           P NP   + +        R++       +L +CR        + ++HA  V  G   + +
Sbjct: 20  PDNPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRL 79

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           + N L+ +YA +  +  A  +F  +  RD VSW  M+ G+++       F  + +     
Sbjct: 80  IGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTA 139

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY---------- 203
           +    Y L  V+ AC   K    GR+IH  V K     + FV  AL+ +Y          
Sbjct: 140 VIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAE 199

Query: 204 ---------------------AKCKVIDDARQLFDQMPTR----DLVTWTVMIGA----- 233
                                A+C   + A Q+FD+M       D VT   ++ A     
Sbjct: 200 RVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVG 259

Query: 234 --------NKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                   + +LL      D I   +++D+Y KCG I++A +IF+   + NV+ W+ M+ 
Sbjct: 260 DLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAV 338
           AYG      K+ ++F  M ++ + PN+ T+  +L  C+ TG +E G ++ S S+ + F  
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGF-- 377

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
             D+     ++D+  + G LD+A K++E M  ++D   W +++     H   D  E A  
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILE-MLEKRDVVSWTSMIAGYVQH---DFCEEALA 433

Query: 399 SLLERQ-----PQNPGHYVLLSNVYANAG 422
           +  E Q     P N G   L S   A AG
Sbjct: 434 TFKEMQDCGVWPDNIG---LASAASACAG 459



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           IS+L +  +I Q +QVH + V  G  +   VAN L+ +Y    ++ DA  +F+ M  R+ 
Sbjct: 555 ISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE 614

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHD 182
           VSW+ ++   S+    +   + F +  + G++ +  T   V+ AC     +  G      
Sbjct: 615 VSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKS 674

Query: 183 IVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLD 239
           +    GL+   D + C  +VD+  +   +D AR+  D+MP T + + W  ++ A K   +
Sbjct: 675 MSNVYGLNPIPDHYAC--VVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKN 732

Query: 240 VILG 243
           + +G
Sbjct: 733 IEIG 736


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 319/570 (55%), Gaps = 60/570 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I S  S + +  +R +H + +  G  TN  V   L+      K + DA +LF+ M    S
Sbjct: 311 IKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQS 370

Query: 124 V-SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           V SW+ M+ G+ +  D       F    R G++ + +T   ++      +  V    IH 
Sbjct: 371 VVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTV----QHAVFISEIHA 426

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
            V+K+  +    V  AL+D + K   I DA ++F+ + T+D++ W+ M+           
Sbjct: 427 EVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEE 486

Query: 234 ---------------NKFLLDVILG-------------------------------TAVI 247
                          N+F    I+                                ++++
Sbjct: 487 AAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLV 546

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            +YAK G+I+SA EIF R ++++++SW++MI+ Y  HGQ KKAL++F  M    +  + I
Sbjct: 547 TLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAI 606

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+ ++ AC+H GLV +G   F+ M +D  + P ++HY+CM+DL  RAG L +A+ +I  
Sbjct: 607 TFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIING 666

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M       +W  +L A R+H+N++L ++AA+ ++  +PQ+   YVLLSN+YA AG W + 
Sbjct: 667 MPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEK 726

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
             +R LM +RR+KK PG++WIEV+NK + F  GD +HP S+ IY  L  L+ +L   GY 
Sbjct: 727 VNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQ 786

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           PDTN+  HD+++E K   L  HSE+LAIAFGLIAT     ++I+KNLRVCGDCHSFIK V
Sbjct: 787 PDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLV 846

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S + +R I+VRD+NRFHHF+GG CSC DYW
Sbjct: 847 SLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 176/386 (45%), Gaps = 65/386 (16%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA +V  G  T  +V N L+ + +    L DA  +F+ M+ +DSVSW+ M+ G     
Sbjct: 224 QIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVING 283

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
             +  FETF      G +    T   VI++C   K++ + R++H   LKSGL  +Q V  
Sbjct: 284 QDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLT 343

Query: 198 ALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA----------------------- 233
           AL+    KCK IDDA  LF  M   + +V+WT MI                         
Sbjct: 344 ALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVK 403

Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
            N F    IL                          GTA++D + K G+I  A ++F+ +
Sbjct: 404 PNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELI 463

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH-TGLVEEG 325
             K+VI+WSAM+A Y   G+ ++A  +F  +    + PN  TF S++ AC+  T  VE+G
Sbjct: 464 ETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQG 523

Query: 326 LRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +  +     +A++  + +  C    +V L  + G ++ A ++ +    E+D   W +++
Sbjct: 524 KQFHA-----YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMI 577

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQN 407
                H     A+ A +   E Q +N
Sbjct: 578 SGYAQHGQ---AKKALEVFEEMQKRN 600



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 166/377 (44%), Gaps = 33/377 (8%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            QVH Q V  G + +L V N L+ +Y     + D   +F+ M +RD VSW+ ++ G+S  
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWN 181

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                 +E F      G + D YT+  VI A  ++  + +G  IH +V+K G + ++ VC
Sbjct: 182 RFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVC 241

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
            +L+ M +K  ++ DAR +FD M  +D V+W  MI  +     VI G  +          
Sbjct: 242 NSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGH-----VINGQDL---------- 286

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM----LSSRVLPNRITFVSL 312
             A E F+ M+        A  A+        K L L  ++    L S +  N+    +L
Sbjct: 287 -EAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTAL 345

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---S 369
           + A +    +++   LFS M     V+  V  +T M+    + G  D+A+ L   M    
Sbjct: 346 MVALTKCKEIDDAFSLFSLM---HGVQSVVS-WTAMISGYLQNGDTDQAVNLFSLMRREG 401

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           V+ +   +  +L    +   V ++E+ A+ +     ++      L + +   G   D  K
Sbjct: 402 VKPNHFTYSTIL---TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVK 458

Query: 430 IRDLMTRRRLKKIPGWT 446
           + +L+     K +  W+
Sbjct: 459 VFELI---ETKDVIAWS 472



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 143/357 (40%), Gaps = 58/357 (16%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+    RD    + ++  +S+          F    R G+  DSYT+  V+  C  
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-- 228
             +  +G  +H   +K GL     V  +LVDMY K   + D R++FD+M  RD+V+W   
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 229 --------------------------------------------VMIGANKFLLDVILG- 243
                                                       V IG     L V LG 
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 244 -------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                   ++I M +K G +  AR +FD M  K+ +SW++MIA +  +GQ  +A + F  
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGL-RLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
           M  +   P   TF S++ +C+   L E GL R+         +  +    T ++  L + 
Sbjct: 295 MQLAGAKPTHATFASVIKSCA--SLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
             +D+A  L   M   +    W A++     + + D A +   SL+ R+   P H+ 
Sbjct: 353 KEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA-VNLFSLMRREGVKPNHFT 408


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 317/561 (56%), Gaps = 61/561 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK-ERDSVSWSVMVGGFSK 135
           +++H   V  G + +++V   +L +Y   + +  A  +F+ M   ++ V+WS MVG +  
Sbjct: 240 KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYV- 298

Query: 136 VADFI-NCFETFREFIRCG---MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           V DF+    E F + +      + L + TL  VIR C +  D+  G  +H   +KSG  +
Sbjct: 299 VCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL 358

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFL--- 237
           D  V   L+ MYAKC +I+ A + F++M  RD V++T +I           G   FL   
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQ 418

Query: 238 ----------------------------------------LDVILGTAVIDMYAKCGSID 257
                                                    D ++  A+IDMYAKCG ID
Sbjct: 419 LSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKID 478

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           +AR++FDRM ++ ++SW+ MI AYG HG G +AL LF  M S  + P+ +TF+ L+ ACS
Sbjct: 479 TARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS 538

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H+GLV EG   F++M  DF + P ++HY CMVDLL RAG   E    IE M +E D  +W
Sbjct: 539 HSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVW 598

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           GALL ACR++KNV+L E  +K + +  P++ G++VLLSN+Y+  GRW D A++R     +
Sbjct: 599 GALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQ 658

Query: 438 RLKKIPGWTWIEVENKIHQF-SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             +K PG +WIE+   +H F   G  +HPQ  +I   L  L  +++  GY  ++++   D
Sbjct: 659 GFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQD 718

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+EE K   L  HSEKLAIAFG+++     HI + KNLRVCGDCH+ IK +S +T+R I 
Sbjct: 719 VEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDIT 778

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA+RFHHF+ G C+C D+W
Sbjct: 779 VRDASRFHHFKDGICNCGDFW 799



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 168/379 (44%), Gaps = 80/379 (21%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  I      +N+ V+  L+  YA    L DA  +F+ M +RD V+W+ M+ GFS  
Sbjct: 139 REIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLH 198

Query: 137 ADFINCFETFREFIRCGMQL------DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
                   ++ E  R  +Q+      +S T+  V+ A      +  G+ IH   ++ G  
Sbjct: 199 EG------SYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFV 252

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGAN--------------K 235
            D  V   ++D+Y KC+ ID AR++FD M   ++ VTW+ M+GA               +
Sbjct: 253 GDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQ 312

Query: 236 FLL---DVILGTAV----------------------------------------IDMYAK 252
            L+   DVI+ +AV                                        + MYAK
Sbjct: 313 LLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAK 372

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG I+ A   F+ M  ++ +S++A+I+ Y  +G  ++ L +F  M  S + P + T  S+
Sbjct: 373 CGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASV 432

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAV----RPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           L AC+H      GL  + S    +A+      D      ++D+  + G++D A K+ + M
Sbjct: 433 LPACAHLA----GLH-YGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRM 487

Query: 369 SVEKDEGLWGALLGACRIH 387
             ++    W  ++ A  IH
Sbjct: 488 H-KRGIVSWNTMIIAYGIH 505



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 125/287 (43%), Gaps = 72/287 (25%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLK-------SGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           ++ +C   K +  G+LIH  +LK       + L         LVD+Y  C  +  AR +F
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74

Query: 217 DQMPTR--DLVTWTVMIGA------------------------NKFLL------------ 238
           D+MP R  ++V W ++I A                        N+F              
Sbjct: 75  DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134

Query: 239 ------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                             +V + TA++D YAKCG +D A+E+FD+M +++V++W++MI+ 
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR- 339
           +  H      +    + + + V PN  T V +L A +    +  G  +       F VR 
Sbjct: 195 FSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHG-----FCVRR 249

Query: 340 ---PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
               DV   T ++D+ G+   +D A ++ + M + K+E  W A++GA
Sbjct: 250 GFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 4/146 (2%)

Query: 246 VIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           ++D+Y  C  +  AR +FD+M  R KNV+ W+ +I AY ++G  ++A+DL+  ML   + 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PNR TF  +L ACS      EG  +   +     +  +V   T +VD   + G LD+A +
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDI-KRLRLESNVYVSTALVDFYAKCGCLDDAKE 175

Query: 364 LIESMSVEKDEGLWGALLGACRIHKN 389
           + + M  ++D   W +++    +H+ 
Sbjct: 176 VFDKMH-KRDVVAWNSMISGFSLHEG 200


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/434 (44%), Positives = 274/434 (63%), Gaps = 54/434 (12%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------------- 230
           +L++ + +   +D AR+LF QMP +++V+WT M                           
Sbjct: 244 SLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRP 303

Query: 231 --------------IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                         IGA             N F L+  +GTA++DMYAKCG+I SA  +F
Sbjct: 304 NDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVF 363

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
              + K++++WS MI  +  HG   +AL  F  M S+ + P+ + F+++L ACSH+G V+
Sbjct: 364 VETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVD 423

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F SM  D+++ P +KHYT +VDLLGRAGRLDEAL  I+SM +  D  +WGAL  A
Sbjct: 424 QGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 483

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR HKN+++AE+ A+ LL+ +P++PG YV LSNVYA  GRW+DV ++R LM  R ++K P
Sbjct: 484 CRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDP 543

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           GW++IEVE ++H F  GD  H ++EEI   L  ++   +  GY+P+T + LH+++EE K 
Sbjct: 544 GWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKE 603

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L SHSEKLA+AFGLI+T  G+ IRI+KNLRVCGDCHS +K+ S ++RR II+RD  RF
Sbjct: 604 DALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRF 663

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 664 HHFKDGTCSCGDYW 677



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 193/417 (46%), Gaps = 58/417 (13%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FI  + +   + Q+ Q+HAQI      +N  V  +L+      K+L  A ++F      +
Sbjct: 43  FIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPN 102

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
              ++ ++ G ++ + F      F   +R  ++ D  TLPFV+++     D+ +GR +H 
Sbjct: 103 LFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHG 162

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD----LVTWTVMIGANKFLL 238
            V+K GL+ D FV  +LVDMY K   +    QLFD+ P R+    ++ W V+I     + 
Sbjct: 163 GVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVG 222

Query: 239 DVILG---------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           D+                   ++I+ + + G +D ARE+F +M +KNV+SW+ MI  +  
Sbjct: 223 DLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQ 282

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD-FAVRPDV 342
           +G  +KAL +F  ML   V PN +T VS L AC+  G ++ G R+ + +  + F +   +
Sbjct: 283 NGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGI 342

Query: 343 KHYTCMVDLLGRAGRL-------------------------------DEALKL---IESM 368
              T +VD+  + G +                               D+AL+    ++S 
Sbjct: 343 G--TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSA 400

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGR 423
            +  DE ++ A+L AC    NVD      +S+       P   HY L+ ++   AGR
Sbjct: 401 GINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGR 457



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 74/175 (42%), Gaps = 5/175 (2%)

Query: 64  ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S+LL+C  I  ++   ++H  + + G   N  +   L+ +YA    +  A  +F   K 
Sbjct: 309 VSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKG 368

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RL 179
           +D ++WSVM+ G++    F    + F +    G+  D      ++ AC    ++  G   
Sbjct: 369 KDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNF 428

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
              + L   ++        +VD+  +   +D+A      MP   D V W  +  A
Sbjct: 429 FESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCA 483


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/543 (37%), Positives = 316/543 (58%), Gaps = 56/543 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    L+  YA    +  A  +F+ +  +D VSW+ M+ G+++  +     E F+E +
Sbjct: 153 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 212

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+ AC     I +GR +H  +   G   +  +  AL+D+Y KC  ++
Sbjct: 213 KTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 272

Query: 211 -------------------------------DARQLFDQM----PTRDLVTWTVMIGANK 235
                                          +A  LF +M     + + VT   ++ A  
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 236 FLLDVILG---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            L  + +G                     T++IDMYAKCG I++A+++FD +  +++ SW
Sbjct: 333 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 392

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   A D+F  M  + + P+ ITFV LL ACSH+G+++ G  +F SM +
Sbjct: 393 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 452

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG +G   EA ++I +M +E D  +W +LL AC++H NV+L E
Sbjct: 453 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 512

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+NPG YVLLSN+YA AGRW +VAKIR L+  + +KK+PG + IE+++ +
Sbjct: 513 SYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 572

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F +GD  HP++ EIY ML  +   LE AG++PDT+  L +++EE K G L  HSEKLA
Sbjct: 573 HEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 632

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+T  GT + I+KNLRVC +CH   K +S I +R II RD  RFHHF  G CSC 
Sbjct: 633 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 692

Query: 575 DYW 577
           DYW
Sbjct: 693 DYW 695



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 182/363 (50%), Gaps = 29/363 (7%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKERDSVSWSVMVG 131
            +R +HAQ++  G        +KL+    L      L  A ++F  ++E + + W+ M  
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           G +  +D ++    +   I  G+  + YT PF++++C   K    G+ IH  VLK G D+
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDL 121

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D +V  +L+ MY +   ++DAR++FDQ   RD+V++                TA+I  YA
Sbjct: 122 DLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY----------------TALITGYA 165

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
             G I SA+++FD +  K+V+SW+AMI+ Y   G  K+AL+LF  M+ + V P+  T VS
Sbjct: 166 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 225

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           ++ AC+ +  +E G R   S  DD     ++K    ++DL  + G ++ A  L E +S  
Sbjct: 226 VVSACAQSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSY- 283

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA-------GRW 424
           KD   W  L+G    H N+    +     + R  ++P    +LS + A A       GRW
Sbjct: 284 KDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 342

Query: 425 QDV 427
             V
Sbjct: 343 IHV 345


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 322/610 (52%), Gaps = 104/610 (17%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   + SSL +C  +  +   +Q+H Q++      +  VA+ ++ +YA      +A  +F
Sbjct: 290 DSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVF 349

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + +++R+SVSW+V++GGF +   F    E F +     M +D + L  +I  C +  DI 
Sbjct: 350 SSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDIC 409

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA----------------------- 212
           +G  +H + LKSG      V  +L+ MYAKC  + +A                       
Sbjct: 410 LGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYS 469

Query: 213 --------RQLFDQMPTRDLVTWTVM---------------------------------- 230
                   R+ FD M TR+++TW  M                                  
Sbjct: 470 QVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYV 529

Query: 231 --------IGANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
                   IGANK              +LD  +  AVI MY+KCG I  AR+ FD + +K
Sbjct: 530 TLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRK 589

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +++SW+AMI  Y  HG GK+A+++F  +L+    P+ I++V++L  CSH+GLVEEG   F
Sbjct: 590 DLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYF 649

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
             M  D  + P ++H++CMVDLLGRAG L EA  LI+ M ++    +WGALL AC+ H N
Sbjct: 650 DMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGN 709

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIE 449
            DLAE+AAK L +      G Y+LL+ +YA+AG+  D A++R LM  + +KK PG++W+E
Sbjct: 710 NDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWME 769

Query: 450 VENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI--PDTNFELHDVDEEVKVGNLY 507
           V N++H F   D +HPQ   I   L  L EK+   GY+       E+H            
Sbjct: 770 VNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTESPRSEIH------------ 817

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLA+AFG+++ P    I IMKNLR+C DCH+ IK +S +T R  ++RD  RFHHF+
Sbjct: 818 -HSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFK 876

Query: 568 GGACSCRDYW 577
           GG+CSC DYW
Sbjct: 877 GGSCSCMDYW 886



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 58/312 (18%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            +I  N +L  YA    +  A  +F  M ERD VSW++++   SK        +   +  
Sbjct: 224 TIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMH 283

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G++ DS T    + AC     +  G+ +H  V+++   ID +V +A+V++YAKC    
Sbjct: 284 GKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFK 343

Query: 211 DARQLFDQMPTRDLVTWTVMIGA------------------------NKFLL-------- 238
           +A+++F  +  R+ V+WTV+IG                         ++F L        
Sbjct: 344 EAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCC 403

Query: 239 ---DVILGT-------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
              D+ LG+                   ++I MYAKCG++ +A  IF+ M +++++SW+ 
Sbjct: 404 NTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTG 463

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MI AY   G   KA + F  M S+R   N IT+ ++L A    G  E+GL+++S M  + 
Sbjct: 464 MITAYSQVGNIAKAREFFDDM-STR---NVITWNAMLGAYIQHGAEEDGLKMYSDMLTEK 519

Query: 337 AVRPDVKHYTCM 348
            V PD   Y  +
Sbjct: 520 DVIPDWVTYVTL 531



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 140/299 (46%), Gaps = 23/299 (7%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           T  N+I  N ++  YA   +L+DA  LF  M  RD  SW+ ++ G+ +   F+N  + F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 148 EFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
              + G  L +++T   V+++C       +   +  ++ K     D  V  ALVDM  +C
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
             +D A + F ++    ++    M+                  YAK   +D A EIF  M
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVG----------------YAKSHGVDHALEIFKSM 251

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
            +++V+SW+ +I+A    G+ ++ALD+   M    V P+  T+ S L AC+    +E G 
Sbjct: 252 PERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGK 311

Query: 327 RLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +L   +  +    P +  Y  + MV+L  + G   EA ++  S+  +++   W  L+G 
Sbjct: 312 QLHVQVIRNL---PHIDPYVASAMVELYAKCGCFKEAKRVFSSLR-DRNSVSWTVLIGG 366



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 19/208 (9%)

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF- 216
           +  L   +R+C  R  +   R +H  ++  GL    F+   L+  Y  C  + DAR L  
Sbjct: 25  TQALADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLR 84

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
           D++   +++T  +M+                  YAK GS+  A E+F RM  ++V SW+ 
Sbjct: 85  DEITEPNVITHNIMMNG----------------YAKLGSLSDAVELFGRMPTRDVASWNT 128

Query: 277 MIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           +++ Y   GQ   ALD+F  M  +   LPN  TF  ++ +C   G  E  L+L   +   
Sbjct: 129 IMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLL-GLLSK 187

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           F  + D    T +VD+L R G +D A K
Sbjct: 188 FDSQDDPDVQTALVDMLVRCGAMDFASK 215


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/561 (39%), Positives = 319/561 (56%), Gaps = 55/561 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R+  +  Q+H  +V  G     +VAN L+  Y+  +   D+   F    ++ S +WS ++
Sbjct: 29  RSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSII 88

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             F++        E  ++ +   ++ D + LP   ++C       +GR +H + +K+G D
Sbjct: 89  SCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYD 148

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------- 230
            D FV ++LVDMYAKC  I  AR++FD+MP R++VTW+ M                    
Sbjct: 149 ADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEA 208

Query: 231 -----------------IGANKFLLDV---ILG--------------TAVIDMYAKCGSI 256
                            + AN  LL++   I G              ++++ +Y+KCG  
Sbjct: 209 LFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVP 268

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A ++F+ +  KN+  W+AM+ AY  H   +K ++LF  M  S + PN ITF+++L AC
Sbjct: 269 EGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNAC 328

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLV+EG   F  M +   + P  KHY  +VD+LGRAGRL EAL++I +M ++  E +
Sbjct: 329 SHAGLVDEGRYYFDQMKES-RIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESV 387

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL +C +HKN +LA  AA  + E  P + G ++ LSN YA  GR++D AK R L+  
Sbjct: 388 WGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRD 447

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R  KK  G +W+E  NK+H F+ G+  H +S+EIY  L  L E++E AGYI DT++ L +
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLRE 507

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VD + K   +  HSE+LAIAFGLI  P    IR+MKNLRVCGDCH+ IK +S  TRRVII
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVII 567

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFH FE G CSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 316/574 (55%), Gaps = 58/574 (10%)

Query: 62  FFISSLL-SCRNI--FQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F +SS+L +C     F + RQ+H  ++     ++  +   L+ +YA +  L DA  +F+ 
Sbjct: 304 FMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDW 363

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  RD + W+ ++ G S        F  F    + G+ ++  TL  V+++    +     
Sbjct: 364 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASAT 423

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD-------------------------- 211
           R +H +  K G   D  V   L+D Y KC  + D                          
Sbjct: 424 RQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQC 483

Query: 212 -----ARQLFDQMPTR----DLVTWTVMIGA-------------------NKFLLDVILG 243
                A +LF +M  +    D    + ++ A                    +F+ D   G
Sbjct: 484 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG 543

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A++  YAKCGSI+ A   F  + ++ V+SWSAMI     HG GK+AL+LF  M+   + 
Sbjct: 544 NALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 603

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN IT  S+L AC+H GLV+E  R F+SM + F +    +HY+CM+DLLGRAG+LD+A++
Sbjct: 604 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAME 663

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           L+ SM  + +  +WGALLGA R+HK+ +L ++AA+ L   +P+  G +VLL+N YA++G 
Sbjct: 664 LVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGM 723

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W +VAK+R LM    +KK P  +W+EV++K+H F VGD +HP ++EIY  L  L + +  
Sbjct: 724 WNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSK 783

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           AGYIP+ + +LHD+D   K   L  HSE+LA+AF L++TP G  IR+ KNLR+C DCH  
Sbjct: 784 AGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMA 843

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            K +S I  R II+RD NRFHHF  G CSC DYW
Sbjct: 844 FKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 187/439 (42%), Gaps = 65/439 (14%)

Query: 61  KFFISSLLSCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GM 118
           +F +  +L C    Q+  QVHA  +A G  +++ VAN L+ +Y     + DA  +F+   
Sbjct: 103 EFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAG 162

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            ER++VSW+ ++  + K     +  + F E +  G+Q   +    V+ AC   ++I  GR
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 222

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
            +H +V++ G + D F   ALVDMY K   +D A  +F++MP  D+V+W  +I       
Sbjct: 223 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 282

Query: 234 -------------------NKFLLDVIL------------------------------GT 244
                              N F+L  IL                              G 
Sbjct: 283 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 342

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            ++DMYAK   +D A ++FD M  +++I W+A+I+   + G+  +A  +F  +    +  
Sbjct: 343 GLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGV 402

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           NR T  ++L + +         R   ++ +      D      ++D   +   L +A+++
Sbjct: 403 NRTTLAAVLKSTASLE-AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRV 461

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE--RQPQNPGHYVLLS--NVYAN 420
            E  S     G   A+          D  E A K  +E  R+   P  +VL S  N  A+
Sbjct: 462 FEECS----SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 517

Query: 421 AGRWQDVAKIRDLMTRRRL 439
              ++   ++   + +R+ 
Sbjct: 518 LSAYEQGKQVHAHLIKRQF 536



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I  Y+KC     AR +FD +     +SWS+++ AY  +G  + A+  F  M +  V  N
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 306 RITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
                 +L       L   G ++ + +M   F    DV     +V + G  G +D+A ++
Sbjct: 103 EFALPVVLKCVPDAQL---GAQVHAMAMATGFG--SDVFVANALVAMYGGFGFMDDARRV 157

Query: 365 IESMSVEKDEGLWGALLGA 383
            +    E++   W  L+ A
Sbjct: 158 FDEAGSERNAVSWNGLMSA 176


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 321/578 (55%), Gaps = 70/578 (12%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S +  C N+ ++R   Q+H  +V  G + +  +   L+  Y+   A+ DA  LF   K
Sbjct: 302 FASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLF---K 358

Query: 120 ER----DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           E     + VSW+ M+ GF +          F E  R G++ + +T   ++ A      ++
Sbjct: 359 ETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTAL----PVI 414

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
               +H  V+K+  +    V  AL+D Y K   +D+A ++F  +  +D+V W+ M+    
Sbjct: 415 SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYA 474

Query: 234 ----------------------NKFLLDVILG---------------------------- 243
                                 N+F    IL                             
Sbjct: 475 QAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSL 534

Query: 244 ---TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
              +A++ MYAK G I+SA E+F R R+K+++SW++MI+ Y  HGQ  KALD+F  M   
Sbjct: 535 CVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKR 594

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
           +V  + +TF+ +  AC+H GLVEEG + F  M  D  + P  +H +CMVDL  RAG+L++
Sbjct: 595 KVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEK 654

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A+K+I++M       +W  +L ACR+HK  +L  +AA+ ++   P++   YVLLSN+YA 
Sbjct: 655 AMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAE 714

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           +G WQ+ AK+R LM  R +KK PG++WIEV+NK + F  GD +HP  ++IY  L  LS +
Sbjct: 715 SGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTR 774

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           L+  GY PDT++ L D+D+E K   L  HSE+LAIAFGLIATP+G+ + I+KNLRVCGDC
Sbjct: 775 LKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDC 834

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEG-GACSCRDYW 577
           H  IK ++ I  R I+VRD+NRFHHF   G CSC D+W
Sbjct: 835 HVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 163/393 (41%), Gaps = 66/393 (16%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           + M  DC    SV     +S+ L C  +F  RQ+H Q +  G L ++ V   L+  Y   
Sbjct: 91  LGMEMDCSIFSSV---LKVSATL-CDELFG-RQLHCQCIKFGFLDDVSVGTSLVDTYMKG 145

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
               D   +F+ MKER+ V+W+ ++ G+++ +        F      G Q +S+T    +
Sbjct: 146 SNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAAL 205

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
               +      G  +H +V+K+GLD    V  +L+++Y KC  +  AR LFD+   + +V
Sbjct: 206 GVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVV 265

Query: 226 TWTVMI---GANKFLLDVI----------------------------------------- 241
           TW  MI    AN   L+ +                                         
Sbjct: 266 TWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSV 325

Query: 242 ----------LGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKA 290
                     + TA++  Y+KC ++  A  +F       NV+SW+AMI+ +  +   ++A
Sbjct: 326 VKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEA 385

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + LF  M    V PN  T+  +L A       E   ++  + ++  +        T ++D
Sbjct: 386 VGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG-----TALLD 440

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              + G++DEA K+   +   KD   W A+L  
Sbjct: 441 AYVKLGKVDEAAKVFSGID-NKDIVAWSAMLAG 472



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 111/262 (42%), Gaps = 54/262 (20%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           AH LF+   +RD  S++ ++ GFS+          F      GM++D      V++    
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D + GR +H   +K G   D  V  +LVD Y K     D R +FD+M  R++VTWT +
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 231 IGA------------------------NKFLLDVILG----------------------- 243
           I                          N F     LG                       
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 244 -------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                   ++I++Y KCG++  AR +FD+   K+V++W++MI+ Y  +G   +AL +F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 297 MLSSRVLPNRITFVSLLYACSH 318
           M  + V  +  +F S++  C++
Sbjct: 290 MRLNHVRLSESSFASIIKLCAN 311



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 26/240 (10%)

Query: 58  VDP-KFFISSLL-----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           V P +F  SS+L     +  ++ Q +Q H   +     ++L V++ LL +YA    +  A
Sbjct: 494 VKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESA 553

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F   +E+D VSW+ M+ G+++    +   + F+E  +  +++DS T   V  AC   
Sbjct: 554 EEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHA 613

Query: 172 KDIVMGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTV 229
             +  G    DI+++   +   +   + +VD+Y++   ++ A ++ D MP     T W  
Sbjct: 614 GLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRT 673

Query: 230 MIGANKFLLDVILG-------TAVI-----------DMYAKCGSIDSAREIFDRMRQKNV 271
           ++ A +      LG        A+I           +MYA+ G      ++   M ++NV
Sbjct: 674 ILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 733


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/483 (41%), Positives = 288/483 (59%), Gaps = 58/483 (12%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+Q D +T PF++++      + +GR +H  +L+ GL ID FV  +L+ MY+   ++D A
Sbjct: 59  GVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMA 118

Query: 213 RQLFDQMPTRDLVTWTV----------------------MIGANK--------------- 235
           R LF  MP R++++W+                       M+G N                
Sbjct: 119 RNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAAC 178

Query: 236 --------------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISW 274
                                 +DV+LGTA+IDMYAKCGS++ A  +F  +   K+V++W
Sbjct: 179 GRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAW 238

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           SAMI+    HG  ++ + LF  M++  V PN +TF+++  AC H GLV EG      M +
Sbjct: 239 SAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTE 298

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+++ P ++HY CMVDL GRAGR+ EA  +++SM +E D  +WGALL   R+H +++  E
Sbjct: 299 DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCE 358

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
           +A K L+E +P N G YVLLSNVYA  GRW+DV  +RDLM    +KK+PG + IEV   +
Sbjct: 359 LALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVL 418

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F VGD +HP++ +I+ ML  + E+L++ GY+ +T   L D+DEE K   L  HSEKLA
Sbjct: 419 HEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLA 478

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           +A+G + T  GT IRI+KNLR+C DCH  IK +S +  R IIVRD NRFHHF  G CSCR
Sbjct: 479 LAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCR 538

Query: 575 DYW 577
           DYW
Sbjct: 539 DYW 541


>gi|294464140|gb|ADE77588.1| unknown [Picea sitchensis]
          Length = 312

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/312 (58%), Positives = 227/312 (72%)

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  KNV+SW+AMI  YG HG G+ AL LF  M    V PN ITF+S+L ACSH GLV+EG
Sbjct: 1   MSNKNVVSWNAMIVGYGMHGHGEDALVLFTQMQQRGVKPNEITFISVLSACSHAGLVDEG 60

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            + ++ M  D+A+ P V+HY CMVDLLGRAG L+EA   IE M +E    +WGA LG+CR
Sbjct: 61  WKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCR 120

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           IH N++L E  A+ LL   P N G+YVLLSN+YA AGRW DVAK+R +M  + +KK PG 
Sbjct: 121 IHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKEKDVKKSPGC 180

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           + IEV NK+H F VGD +HPQ+E IY ML TL+ ++E  GY+P T+F LHDV+EE+K   
Sbjct: 181 SLIEVNNKLHSFVVGDISHPQTEAIYAMLETLARQMEAVGYVPCTDFVLHDVEEEIKENM 240

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHH 565
           L++HSEKLAIAFGLI+T  GT IRI KNLRVCGDCHS  K +S I +R II+RD NRFHH
Sbjct: 241 LFAHSEKLAIAFGLISTRSGTSIRITKNLRVCGDCHSATKFISKIVKREIIMRDLNRFHH 300

Query: 566 FEGGACSCRDYW 577
           F+ G CSC DYW
Sbjct: 301 FKDGLCSCGDYW 312


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/641 (34%), Positives = 326/641 (50%), Gaps = 124/641 (19%)

Query: 61  KFFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYA------------- 103
           +F ++++LS   + Q     R+VH+ +V  G  + + VAN +L +Y              
Sbjct: 58  QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 117

Query: 104 -----------------LHKALTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFET 145
                             H    D A +LF  M +R  VSW+ M+ G+++        + 
Sbjct: 118 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 177

Query: 146 FREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           F   +    M  D +T+  V+ AC +  ++ +G+ +H  +L++ +  +  V  AL+  YA
Sbjct: 178 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 237

Query: 205 KCKVIDDARQLFDQ---------------------------------MPTRDLVTWTVMI 231
           K   +++AR++ DQ                                 M  RD+V WT MI
Sbjct: 238 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 297

Query: 232 ------------------------GANKFLLDVILG------------------------ 243
                                     N + L  +L                         
Sbjct: 298 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 357

Query: 244 ------TAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                  A+I MYA+ GS   AR +FD++  +K  I+W++MI A   HGQG++A+ LF  
Sbjct: 358 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 417

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML + V P+RIT+V +L ACSH G V EG R +  + ++  + P++ HY CMVDLL RAG
Sbjct: 418 MLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAG 477

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
              EA + I  M VE D   WG+LL ACR+HKN +LAE+AA+ LL   P N G Y  ++N
Sbjct: 478 LFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIAN 537

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           VY+  GRW D A+I      + ++K  G++W  + +KIH F   D  HPQ + +Y M   
Sbjct: 538 VYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAAR 597

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           + E+++ AG++PD    LHDVD+E+K   L  HSEKLAIAFGLI+TPE T +R+MKNLRV
Sbjct: 598 MWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRV 657

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ IK +S +T R IIVRDA RFHHF  G CSC+DYW
Sbjct: 658 CNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 142/278 (51%), Gaps = 27/278 (9%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           ++A    L DA  +F  M ERD+VSW+VMV G ++   F    +T  +    G     +T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  V+ +C   +   +GR +H  V+K GL     V  ++++MY KC   + A  +F++MP
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
            R + +W  M+  N  L                G +D A  +F+ M  ++++SW+AMIA 
Sbjct: 121 VRSVSSWNAMVSLNTHL----------------GRMDLAESLFESMPDRSIVSWNAMIAG 164

Query: 281 YGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           Y  +G   KAL LF  ML  S + P+  T  S+L AC++ G V  G ++ +     + +R
Sbjct: 165 YNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHA-----YILR 219

Query: 340 PDVKHYTCMVDLL----GRAGRLDEALKLIESMSVEKD 373
            ++ + + + + L     ++G ++ A ++++  S+E D
Sbjct: 220 TEMAYNSQVTNALISTYAKSGSVENARRIMDQ-SMETD 256


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/553 (39%), Positives = 323/553 (58%), Gaps = 49/553 (8%)

Query: 27  AIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAG 86
           A++L  HG E   M  R+     P  +FT +   K  ++S      + + R++HA I+  
Sbjct: 145 ALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRH 204

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G    + +   L+ +YA    +++A  +FN M  ++ VSWS M+  ++K        E F
Sbjct: 205 GYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELF 264

Query: 147 REFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           RE +     L  +S T+  V++AC     +  GRLIH  +L+ GLD              
Sbjct: 265 RELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLD-------------- 310

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                           +L VI  +A++ MYA+CG ++  + +FD
Sbjct: 311 -------------------------------SILPVI--SALVTMYARCGKLELGQRVFD 337

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           +M +++V+SW+++I++YG HG GKKA+ +F  M  + V P+ I+FVS+L ACSH GLV+E
Sbjct: 338 QMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDE 397

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G  LF+SM     + P V+HY CMVDLLGRA RL+EA K+IE+M +E    +WG+LLG+C
Sbjct: 398 GKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSC 457

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           RIH NV+LAE A+  L + +P N G+YVLL+++YA AG W  V +++ L+  R L+K+PG
Sbjct: 458 RIHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPG 517

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            +WIEV+ KI+ F   D  +P+ E+++ +LV LS +L+  GY+P T   L+D+    K  
Sbjct: 518 RSWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKER 577

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            +  HSEKLA+AFGLI + +G  IRI K+LR+C DCHSF K +S    + I+VRD NRFH
Sbjct: 578 IVLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFH 637

Query: 565 HFEGGACSCRDYW 577
           HF  G CSC DYW
Sbjct: 638 HFRDGVCSCGDYW 650



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 97/372 (26%)

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           +T   +I +C  +  ++  + +H  +L++G D D F+   L++MY+    ID+AR++FD+
Sbjct: 71  HTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDK 130

Query: 219 MPTRDLVTWTVM------------------------IGANKFLLDVILGTAV-------- 246
              R +  +  +                        I +++F    +L   V        
Sbjct: 131 TRNRTIYVYNALFRALSLAGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSL 190

Query: 247 --------------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                     +DMYAK G + +A  +F++M  KNV+SWSAMIA 
Sbjct: 191 LNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIAC 250

Query: 281 YGYHGQGKKALDLF-PMMLSSRVL-PNRITFVSLLYACSHTGLVEEG------------- 325
           Y  +G+  +AL+LF  +ML ++ L PN +T VS+L AC+    +E+G             
Sbjct: 251 YAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLD 310

Query: 326 ------------------LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
                             L L   ++D    R DV  +  ++   G  G   +A+ + E 
Sbjct: 311 SILPVISALVTMYARCGKLELGQRVFDQMDKR-DVVSWNSLISSYGVHGFGKKAIGIFEE 369

Query: 368 MS---VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAG 422
           M+   VE     + ++LGAC     VD  +M   S+       P   HY  + ++   A 
Sbjct: 370 MTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRAN 429

Query: 423 RWQDVAKIRDLM 434
           R ++ AKI + M
Sbjct: 430 RLEEAAKIIENM 441


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 310/568 (54%), Gaps = 68/568 (11%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYA------LHKALTDAHAL--------FNGMKERDS 123
            +HA  +  G   +   AN LL +Y        H    D  A+        F+ M E+D 
Sbjct: 79  SLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDV 138

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ +V G ++           RE  R G + DS+TL  V+    +  D+  G  +H  
Sbjct: 139 VSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGF 198

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL------------------- 224
             ++G   D FV ++L+DMYA C   D + ++FD +P RD                    
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 225 ----------------VTWTVMIGANKFLLDVILG-------------------TAVIDM 249
                           VT++ +I A   L  ++LG                   +++IDM
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDM 318

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y KCG++  AR IFDR++  +++SW+AMI  +  HG  ++AL LF  M    + PN ITF
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITF 378

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           +++L ACSH GLV++G + F+SM D + + P ++H+  + D LGR G+L+EA   I  M 
Sbjct: 379 LAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMK 438

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           ++    +W  LL AC++HKN  LAE  AK + + +P++ G +++LSN Y+++GRW + A 
Sbjct: 439 IKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAH 498

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R  M ++ ++K P  +WIEV+NK H F   D +HP  E I   L   SE++   GY+P+
Sbjct: 499 LRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPN 558

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
           T+    D++EE K   L  HSEKLAI FG+I+TP GT IR+MKNLRVC DCH+  K +S 
Sbjct: 559 TDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISK 618

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I  R I++RDANRFHHF+ G CSC D+W
Sbjct: 619 IVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 165/424 (38%), Gaps = 111/424 (26%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK------------ 207
           +LP  +++C       +G  +H + L+SG   D+F   AL+++Y K              
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 208 --VIDDARQLFDQMPTRDLVTWTVMI------------------------GANKFLLDVI 241
             V++  R++FD+MP +D+V+W  ++                          + F L  +
Sbjct: 120 AVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSV 179

Query: 242 L------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           L                              G+++IDMYA C   D + ++FD +  ++ 
Sbjct: 180 LPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDA 239

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF-- 329
           I W++M+A    +G   +AL LF  ML S + P  +TF SL+ AC +   +  G +L   
Sbjct: 240 ILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAY 299

Query: 330 -------------SSMWD---------------DFAVRPDVKHYTCMVDLLGRAGRLDEA 361
                        SS+ D               D    PD+  +T M+      G   EA
Sbjct: 300 VIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREA 359

Query: 362 LKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSN 416
           L L + M   +++ +   + A+L AC     VD       S+ +     P   H+  L++
Sbjct: 360 LVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALAD 419

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
                G+ ++       M  +    +  W+ +    K+H+ +V       +EE+ + +  
Sbjct: 420 TLGRPGKLEEAYNFISGMKIKPTASV--WSTLLRACKVHKNTV------LAEEVAKKIFD 471

Query: 477 LSEK 480
           L  +
Sbjct: 472 LEPR 475



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 17/210 (8%)

Query: 60  PKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           P  F S + +C N+  +   +Q+HA ++ GG   N+ +++ L+ +Y     ++ A  +F+
Sbjct: 274 PVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFD 333

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            ++  D VSW+ M+ G +           F       ++ +  T   V+ AC     +  
Sbjct: 334 RIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDK 393

Query: 177 G-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGAN 234
           G +  + +    G+       AAL D   +   +++A      M  +   + W+ ++ A 
Sbjct: 394 GWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRAC 453

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
           K   + +L   V            A++IFD
Sbjct: 454 KVHKNTVLAEEV------------AKKIFD 471


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 319/583 (54%), Gaps = 58/583 (9%)

Query: 53   QFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
            Q  + ++   F S+L +C N   + + + VHA I+  G    LIV N L+ +Y     + 
Sbjct: 1142 QMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMM 1201

Query: 110  DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            +A  +   M + D V+W+ ++GG ++  +     + ++     G+  +  T+  V+ AC 
Sbjct: 1202 EAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261

Query: 170  DRKDIVM-GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
               D++  G  IH  ++ +G + D +V  +L+ MYAKC  ++ +  +FD +  +  +TW 
Sbjct: 1262 APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWN 1321

Query: 229  VM----------------------IGAN-------------------------------- 234
             M                      +G N                                
Sbjct: 1322 AMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKL 1381

Query: 235  KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
             F  D+ +  A +DMY KCG +    ++  +   ++ +SW+ +I+A+  HG  +KA + F
Sbjct: 1382 GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETF 1441

Query: 295  PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
              ML     P+ +TFVSLL AC+H GLV+EGL  + SM  +F V P ++H  C++DLLGR
Sbjct: 1442 HEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGR 1501

Query: 355  AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            +GRL  A   I+ M V  ++  W +LL ACRIH N++LA   A+ LLE  P +   YVL 
Sbjct: 1502 SGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLY 1561

Query: 415  SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
            SNV A +G+W+DV  +R  M    +KK P  +W+++++K+H F +G+  HPQ+  I   L
Sbjct: 1562 SNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKL 1621

Query: 475  VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
              L +  + AGY+PDT+F LHD+DEE K  NL++HSE+LA+AFGLI TPE + +RI KNL
Sbjct: 1622 GELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNL 1681

Query: 535  RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            RVCGDCHS  K VS I  R I++RD  RFHHF GG CSC DYW
Sbjct: 1682 RVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 221/431 (51%), Gaps = 55/431 (12%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QV   I  G  + NL V + L+  ++    + DA  LF  M ERD VSW+ M+GG++   
Sbjct: 152 QVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQG 211

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
              + F  FR  +R G+  D YTL  V+RA  +   +++   IH I+ + G      V  
Sbjct: 212 FADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTG 271

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------------IG 232
            L++ YAK   +  A+ L   M  +DL + T +                         IG
Sbjct: 272 LLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIG 331

Query: 233 ANKFLL------------------------------DVILGTAVIDMYAKCGSIDSAREI 262
            +  +L                              DV +G A+IDMYAK G I+ A+  
Sbjct: 332 MDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRA 391

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M +KNVISW+++I+ Y  HG G  A+ L+  M S    PN +TF+SLL+ACSHTGL 
Sbjct: 392 FDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLT 451

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EG   F++M + + ++P  +HY+CMVDL  R G L+EA  L+  + ++ +  LWGA+LG
Sbjct: 452 AEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILG 511

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           A  I+  + L + AA +L   QP+N  +YV+L+++Y+ AG W D  KIR LM  R  KK 
Sbjct: 512 ASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKN 571

Query: 443 PGWTWIEVENK 453
            G+++ +   K
Sbjct: 572 AGYSFFQATKK 582



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 184/418 (44%), Gaps = 60/418 (14%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            R +H  +V  G  +N+ + N LL +Y+      DA  +F  M ERD +SW+ M+  + + 
Sbjct: 1068 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 1127

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               ++  +   E ++ G  ++  T    + AC + + ++  +++H +++ +G      V 
Sbjct: 1128 GKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVG 1187

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
             ALV MY K  ++ +A+++   MP  D VTW  +IG                        
Sbjct: 1188 NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP 1247

Query: 233  ANKFLLDVILG-------------------------------TAVIDMYAKCGSIDSARE 261
            AN   +  +LG                                ++I MYAKCG ++S+  
Sbjct: 1248 ANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNY 1307

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            IFD +  K+ I+W+AM+AA  +HG G++AL +F  M +  V  ++ +F   L A ++  +
Sbjct: 1308 IFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAV 1367

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +EEG +L   +        D+      +D+ G+ G + + LK++    + +    W  L+
Sbjct: 1368 LEEGQQL-HGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PINRSRLSWNILI 1425

Query: 382  GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA--NAGRWQDVAKIRDLMTRR 437
             A   H     A      +L+  P+ P H   +S + A  + G   +     D MTR 
Sbjct: 1426 SAFARHGCFQKARETFHEMLKLGPK-PDHVTFVSLLSACNHGGLVDEGLAYYDSMTRE 1482



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 183/424 (43%), Gaps = 69/424 (16%)

Query: 58  VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +DP  ++  L  C +    +Q   +H  ++  G  ++L +  KL+  Y     +  A  +
Sbjct: 28  LDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNV 87

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+GM ER  VSW+ MV G+S+   F   F  F +   CG++ + +T    +RAC   + +
Sbjct: 88  FDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCL 147

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
            MG  +   + K     + FV +ALVD ++KC  ++DA  LF  M  RD+V+W  MIG  
Sbjct: 148 DMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGY 207

Query: 234 -------NKFLL--DVILGTAVIDMY---------------------------------- 250
                  + F +   ++ G  V D Y                                  
Sbjct: 208 AVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYD 267

Query: 251 ----------AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG-QGKKALDLFPMMLS 299
                     AK GS+ SA+++   M +K++ S +A+I  Y + G     ALDLF  M  
Sbjct: 268 IVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQ 327

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRA 355
             +  + +   S+L  C++      G ++ +     FA++     DV     ++D+  ++
Sbjct: 328 MNIGMDDVILCSMLNICANLASFALGTQIHA-----FALKYQPSYDVAMGNALIDMYAKS 382

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G +++A +  + M  EK+   W +L+     H    +A    K  +E +   P     LS
Sbjct: 383 GEIEDAKRAFDEME-EKNVISWTSLISGYAKHGYGHMAVSLYKK-MESKGFKPNDVTFLS 440

Query: 416 NVYA 419
            ++A
Sbjct: 441 LLFA 444



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 165/366 (45%), Gaps = 58/366 (15%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            + +HA  + G     +   N L+ +Y+    +  A  +F+ M+ R+  SWS M+ G+ +V
Sbjct: 764  KALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRV 823

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFV 195
              +      F +    G++ + + +  +I AC R       G  +H  V+K+G+  D +V
Sbjct: 824  GLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYV 883

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIG---------------------- 232
              ALV  Y    ++ +A++LF++MP  ++V+WT +M+G                      
Sbjct: 884  GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 943

Query: 233  ---ANKF---------LLDVILG-------------------TAVIDMYAKCGSIDSARE 261
                N F         L D +LG                    ++I M++   S++ A  
Sbjct: 944  SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 1003

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +FD M + ++ISW+AMI+AY +HG  +++L  F  M       N  T  SLL  CS    
Sbjct: 1004 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 1063

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            ++ G R    +     +  +V     ++ L   AGR ++A  + ++M+ E+D   W +++
Sbjct: 1064 LKWG-RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMM 1121

Query: 382  GACRIH 387
             AC + 
Sbjct: 1122 -ACYVQ 1126



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 155/359 (43%), Gaps = 65/359 (18%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK-- 135
            QV   I+  G   ++ VAN L+ +++   ++ +A  +F+ M E D +SW+ M+  ++   
Sbjct: 968  QVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHG 1027

Query: 136  -VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               + + CF   R       + +S TL  ++  C    ++  GR IH +V+K GLD +  
Sbjct: 1028 LCRESLRCFHWMRHLHN---ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVC 1084

Query: 195  VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
            +C  L+ +Y++    +DA  +F  M  RDL++W                           
Sbjct: 1085 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISW--------------------------- 1117

Query: 255  SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                                ++M+A Y   G+    L +   +L    + N +TF S L 
Sbjct: 1118 --------------------NSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALA 1157

Query: 315  ACSHTG-LVEEGL---RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            ACS+   L+E  +    +  + + DF +  +      +V + G+ G + EA K++++M  
Sbjct: 1158 ACSNPECLIESKIVHALIIVAGFHDFLIVGNA-----LVTMYGKLGMMMEAKKVLQTMP- 1211

Query: 371  EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
            + D   W AL+G    ++  + A  A K  L R+   P +Y+ + +V        D+ K
Sbjct: 1212 QPDRVTWNALIGGHAENEEPNEAVKAYK--LIREKGIPANYITMVSVLGACSAPDDLLK 1268



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 13/160 (8%)

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
           ++  QM  + L  + ++   N   L +     +I+MY+K G+I+ AR +FD MR +N  S
Sbjct: 756 EITSQMAGKALHAFCIVGSVN---LGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS 812

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG-LVEEGLRLFSSM 332
           WS M++ Y   G  ++A+ LF  M    V PN     SL+ ACS +G + +EG ++    
Sbjct: 813 WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG-- 870

Query: 333 WDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESM 368
              F V+     DV   T +V   G  G +  A KL E M
Sbjct: 871 ---FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 907



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 121/295 (41%), Gaps = 66/295 (22%)

Query: 150  IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
            IRC   L++   P  ++   +    + G+ +H   +   +++  F    L++MY+K   I
Sbjct: 741  IRC---LNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNI 795

Query: 210  DDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLL------- 238
            + AR +FD+M  R+  +W+ M+                          N F++       
Sbjct: 796  EHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITAC 855

Query: 239  ------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                                    DV +GTA++  Y   G + +A+++F+ M   NV+SW
Sbjct: 856  SRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSW 915

Query: 275  SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
            ++++  Y   G   + L+++  M    V  N+ TF ++  +C   GL+E+ +  +  +  
Sbjct: 916  TSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGH 972

Query: 335  --DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
               +     V     ++ +      ++EA  + + M+ E D   W A++ A   H
Sbjct: 973  IIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHH 1026


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/641 (34%), Positives = 326/641 (50%), Gaps = 124/641 (19%)

Query: 61  KFFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYA------------- 103
           +F ++++LS   + Q     R+VH+ +V  G  + + VAN +L +Y              
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFE 223

Query: 104 -----------------LHKALTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFET 145
                             H    D A +LF  M +R  VSW+ M+ G+++        + 
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 146 FREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           F   +    M  D +T+  V+ AC +  ++ +G+ +H  +L++ +  +  V  AL+  YA
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 205 KCKVIDDARQLFDQ---------------------------------MPTRDLVTWTVMI 231
           K   +++AR++ DQ                                 M  RD+V WT MI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 232 ------------------------GANKFLLDVILG------------------------ 243
                                     N + L  +L                         
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 244 ------TAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                  A+I MYA+ GS   AR +FD++  +K  I+W++MI A   HGQG++A+ LF  
Sbjct: 464 QSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML + V P+RIT+V +L ACSH G V EG R +  + ++  + P++ HY CMVDLL RAG
Sbjct: 524 MLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAG 583

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
              EA + I  M VE D   WG+LL ACR+HKN +LAE+AA+ LL   P N G Y  ++N
Sbjct: 584 LFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIAN 643

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           VY+  GRW D A+I      + ++K  G++W  + +KIH F   D  HPQ + +Y M   
Sbjct: 644 VYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAAR 703

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           + E+++ AG++PD    LHDVD+E+K   L  HSEKLAIAFGLI+TPE T +R+MKNLRV
Sbjct: 704 MWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRV 763

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ IK +S +T R IIVRDA RFHHF  G CSC+DYW
Sbjct: 764 CNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N LL ++A    L DA  +F  M ERD+VSW+VMV G ++   F    +T  +  
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G     +TL  V+ +C   +   +GR +H  V+K GL     V  ++++MY KC   +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            A  +F++MP R + +W  M+  N  L                G +D A  +F+ M  ++
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHL----------------GRMDLAESLFESMPDRS 260

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++SW+AMIA Y  +G   KAL LF  ML  S + P+  T  S+L AC++ G V  G ++ 
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 330 SSMWDDFAVRPDVKHYTCMVDLL----GRAGRLDEALKLIESMSVEKD 373
           +     + +R ++ + + + + L     ++G ++ A ++++  S+E D
Sbjct: 321 A-----YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQ-SMETD 362



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 36/252 (14%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDARQLFDQM 219
           +++ C+   +   GR IH   +K+GL    ++C  L+  Y +       + DAR+LFD++
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 220 P--TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           P   R++ TW                 +++ M+AK G +  AR +F  M +++ +SW+ M
Sbjct: 92  PLARRNVFTW----------------NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVM 135

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +      G+  +A+     M +    P + T  ++L +C+ T     G ++ S     F 
Sbjct: 136 VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHS-----FV 190

Query: 338 VRPD----VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           V+      V     ++++ G+ G  + A  + E M V +    W A++        +DLA
Sbjct: 191 VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV-RSVSSWNAMVSLNTHLGRMDLA 249

Query: 394 EMAAKSLLERQP 405
           E    SL E  P
Sbjct: 250 E----SLFESMP 257


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/489 (40%), Positives = 283/489 (57%), Gaps = 47/489 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + +++V   +L  Y     +  A  +F  M  ++ V+W+ M+ G+ +     +  + F+ 
Sbjct: 226 MKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKT 285

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            I   ++ +  +L  V+  C +   + +GR +H +V KS L  D   C            
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC------------ 333

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                              T++I MY KCG +DSA ++F  M +
Sbjct: 334 -----------------------------------TSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+VISW+AMI+ Y  HG G+KAL LF  M +  + P+ ITFV+++ AC+H G V+ G++ 
Sbjct: 359 KDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQY 418

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F SM  +F +     HYTC++DLLGRAGRLDEA+ LI+ M  +    ++G LLGACRIHK
Sbjct: 419 FKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHK 478

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N+DLAE AA++LL   P +   YV L+N+YA   +W  VAK+R +M    + KIPG++WI
Sbjct: 479 NLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWI 538

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
           E+++  H+F   D  HP+   I++ L  L  K++LAGY+PD  F LHDV+EE K   L  
Sbjct: 539 EIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLW 598

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSEKLAIAFGL+ T  GT IR+ KNLRVCGDCH  IK +SAI +R IIVRD  RFHHF  
Sbjct: 599 HSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRN 658

Query: 569 GACSCRDYW 577
           G CSC DYW
Sbjct: 659 GFCSCGDYW 667



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 28/317 (8%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           T ++++  NK +  +     L  A  +F  M  R +V+W+ M+ G++KVA  +   E   
Sbjct: 69  TASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVK--EAHE 126

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL--IHDIVLKSGLDIDQFVCAALVDMYAK 205
            F +   + DS +   ++  C  R   V   L   + + +K   DI  +    L+  +A+
Sbjct: 127 LFDKIP-EPDSVSYNIML-VCYLRSYGVEAALAFFNKMPVK---DIASW--NTLISGFAQ 179

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMY 250
              +  A  LF  MP ++ V+W+ MI                 N  +  V++ TA++  Y
Sbjct: 180 NGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGY 239

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            K G ++ A  IF RM  KN+++W++MIA Y  + + +  L +F  M+ SRV PN ++  
Sbjct: 240 MKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L  CS+   +  G R    +     +  D    T ++ +  + G LD A KL   M  
Sbjct: 300 SVLLGCSNLSALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP- 357

Query: 371 EKDEGLWGALLGACRIH 387
            KD   W A++     H
Sbjct: 358 RKDVISWNAMISGYAQH 374



 Score = 52.0 bits (123), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY-GYHGQGKKALDLFPMM 297
           DV+     I  + +   ++SAR +F++M  +  ++W+ M++ Y    G+ K+A +LF  +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                 P+ +++  +L     +  VE  L  F+ M     V+ D+  +  ++    + G+
Sbjct: 132 PE----PDSVSYNIMLVCYLRSYGVEAALAFFNKM----PVK-DIASWNTLISGFAQNGQ 182

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
           + +A  L   M  EK+   W A++     H +++ AE   K++
Sbjct: 183 MQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAAEELYKNV 224


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 308/555 (55%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H  +V    + N+ V N  L  Y+ H  + +   LFN M E D VS++V++  ++ V
Sbjct: 261 QQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWV 320

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  + F+E         ++  P ++       D+ MGR +H  V+ S  D D  V 
Sbjct: 321 GKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVS 380

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTR---------------------------------- 222
            +LVDMYAKC   ++A ++F ++ +R                                  
Sbjct: 381 NSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVS 440

Query: 223 -DLVTWTVMIGANKFLLDVILGT------------------AVIDMYAKCGSIDSAREIF 263
            D  T+  ++ A+  L  ++LG                   A++DMYA C SI  A + F
Sbjct: 441 ADQATFACVLKASANLASILLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTF 500

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           + M ++NV++W+A+++AY  +G GK  L  F  M+ S   P+ ++F+ +L ACSH  LVE
Sbjct: 501 EEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVE 560

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EGL+ F+ M   + + P  +HYT MVD L R+GR DEA KL+  M  E DE +W ++L +
Sbjct: 561 EGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNS 620

Query: 384 CRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           CRIHKN  LA  AA  L   +  ++   YV +SN++A AG+W  V K++  M  R ++K+
Sbjct: 621 CRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKL 680

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           P ++W+E+++K+H FS  D  HPQ  EI R +  L+E++E  GY PD +    +VD+E K
Sbjct: 681 PAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESK 740

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
           + +L  HSE+LAIAF LI TPEG+ I +MKNLR C DCH+ IK +S I  R I VRD+NR
Sbjct: 741 IDSLKYHSERLAIAFALINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNR 800

Query: 563 FHHFEGGACSCRDYW 577
           FHHF  G+CSC DYW
Sbjct: 801 FHHFRDGSCSCGDYW 815



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 166/381 (43%), Gaps = 66/381 (17%)

Query: 63  FISSLLSCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +I+ L  C ++    ++ Q HAQIV  G   N  V N LL  Y     L  A  LF  M 
Sbjct: 143 YITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMC 202

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             DSVS++VM+ G++         E F E    G +   +T   VI A     D   G+ 
Sbjct: 203 GWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQ 262

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL-- 237
           IH  V+K+    + FV  A +D Y+K   +++ R+LF++MP  D V++ V+I A  ++  
Sbjct: 263 IHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGK 322

Query: 238 ---------------------------------LDVILG-------------------TA 245
                                            LD+ +G                    +
Sbjct: 323 VKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNS 382

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++DMYAKCG  + A  IF R+  ++ + W+AMI+A    G  +  L LF  M  + V  +
Sbjct: 383 LVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSAD 442

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP---DVKHYTCMVDLLGRAGRLDEAL 362
           + TF  +L A ++   +  G +L S +     +R    +V     ++D+      + +A+
Sbjct: 443 QATFACVLKASANLASILLGKQLHSCV-----IRSGFMNVYSGCALLDMYANCASIKDAI 497

Query: 363 KLIESMSVEKDEGLWGALLGA 383
           K  E MS E++   W ALL A
Sbjct: 498 KTFEEMS-ERNVVTWNALLSA 517



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 164/378 (43%), Gaps = 62/378 (16%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMK 119
            F I  L     + Q RQ+  Q+    + + ++I++      Y     LT A  +F+   
Sbjct: 47  NFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISG-----YVKSGNLTVARRIFDDTD 101

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER  V+W+ M+G +SK   F + F+ F E  R G Q D  T   ++  C D +       
Sbjct: 102 ERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQ 161

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GA 233
            H  ++K G  ++  VC  L+D Y K   +D AR+LF +M   D V++ VMI      G 
Sbjct: 162 AHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGL 221

Query: 234 NK------------------------------------------------FLLDVILGTA 245
           N+                                                F+ +V +G A
Sbjct: 222 NEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNA 281

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
            +D Y+K   ++  R++F+ M + + +S++ +I AY + G+ K+++DLF  +  +     
Sbjct: 282 FLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRK 341

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
              F ++L   + +  ++ G +L + +    A  PD +    +VD+  + G+ +EA ++ 
Sbjct: 342 NFPFPTMLSIAASSLDLQMGRQLHAQVVVSMA-DPDFRVSNSLVDMYAKCGKFEEADRIF 400

Query: 366 ESMSVEKDEGLWGALLGA 383
             +S  +    W A++ A
Sbjct: 401 LRLS-SRSTVPWTAMISA 417



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 25/239 (10%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           S D   F   L +  N+  I   +Q+H+ ++  G + N+     LL +YA   ++ DA  
Sbjct: 440 SADQATFACVLKASANLASILLGKQLHSCVIRSGFM-NVYSGCALLDMYANCASIKDAIK 498

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
            F  M ER+ V+W+ ++  +++  D     ++F E I  G Q DS +   ++ AC   + 
Sbjct: 499 TFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRL 558

Query: 174 IVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI 231
           +  G +  +D+     L   +    A+VD   +    D+A +L  QMP   D + WT ++
Sbjct: 559 VEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVL 618

Query: 232 GA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
            +                    K L D      + +++A+ G  DS  ++   MR + V
Sbjct: 619 NSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGV 677


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 314/574 (54%), Gaps = 58/574 (10%)

Query: 62  FFISSLLSC---RNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F +SS+L        F + RQ+H  ++     ++  +   L+ +YA +  L DA  +F+ 
Sbjct: 211 FMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDW 270

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  RD + W+ ++ G S        F  F    + G+ ++  TL  V+++    +     
Sbjct: 271 MSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASAT 330

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD-------------------------- 211
           R +H +  K G   D  V   L+D Y KC  + D                          
Sbjct: 331 RQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQC 390

Query: 212 -----ARQLFDQMPTR----DLVTWTVMIGA-------------------NKFLLDVILG 243
                A +LF +M  +    D    + ++ A                    +F+ D   G
Sbjct: 391 DHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG 450

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A++  YAKCGSI+ A   F  + ++ V+SWSAMI     HG GK+AL+LF  M+   + 
Sbjct: 451 NALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGIN 510

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN IT  S+L AC+H GLV+E  R F+SM + F +    +HY+CM+DLLGRAG+LD+A++
Sbjct: 511 PNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAME 570

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           L+ SM  + +  +WGALLGA R+HK+ +L ++AA+ L   +P+  G +VLL+N YA++G 
Sbjct: 571 LVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGM 630

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W +VAK+R LM    +KK P  +W+EV++K+H F VGD +HP ++EIY  L  L + +  
Sbjct: 631 WNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSK 690

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           AGYIP+ + +LHD+D   K   L  HSE+LA+AF L++TP G  IR+ KNLR+C DCH  
Sbjct: 691 AGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMA 750

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            K +S I  R II+RD NRFHHF  G CSC DYW
Sbjct: 751 FKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 187/439 (42%), Gaps = 65/439 (14%)

Query: 61  KFFISSLLSCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GM 118
           +F +  +L C    Q+  QVHA  +A G  +++ VAN L+ +Y     + DA  +F+   
Sbjct: 10  EFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAG 69

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            ER++VSW+ ++  + K     +  + F E +  G+Q   +    V+ AC   ++I  GR
Sbjct: 70  SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 129

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
            +H +V++ G + D F   ALVDMY K   +D A  +F++MP  D+V+W  +I       
Sbjct: 130 QVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNG 189

Query: 234 -------------------NKFLLDVIL------------------------------GT 244
                              N F+L  IL                              G 
Sbjct: 190 HDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGV 249

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            ++DMYAK   +D A ++FD M  +++I W+A+I+   + G+  +A  +F  +    +  
Sbjct: 250 GLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGV 309

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           NR T  ++L + +         R   ++ +      D      ++D   +   L +A+++
Sbjct: 310 NRTTLAAVLKSTASLE-AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRV 368

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE--RQPQNPGHYVLLS--NVYAN 420
            E  S     G   A+          D  E A K  +E  R+   P  +VL S  N  A+
Sbjct: 369 FEECS----SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACAS 424

Query: 421 AGRWQDVAKIRDLMTRRRL 439
              ++   ++   + +R+ 
Sbjct: 425 LSAYEQGKQVHAHLIKRQF 443


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/567 (36%), Positives = 339/567 (59%), Gaps = 61/567 (10%)

Query: 72  NIFQIRQVHA-QIVAGGTLTNLIVANKLL-YIYALHKA--LTDAHALFNGMKERDSV-SW 126
           ++ ++RQ+HA  I  G ++++  +   L+ Y+ +L     ++ AH +F+ +++  +V  W
Sbjct: 29  SLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 127 SVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           + ++ G++++ + ++    +RE    G ++ D++T PF+++A     D+ +G  IH +V+
Sbjct: 89  NTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVVI 148

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT------------------- 226
           +SG     +V  +L+ +YA C  +  A ++FD+MP +DLV                    
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 227 -WTVM---------------------IGA-------NKFLLDVIL------GTAVIDMYA 251
            +T M                     IGA       + +++ V L         ++D+YA
Sbjct: 209 LYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFV 310
           +CG ++ A+ +FD M  KN +SW+++I     +G GK+A++LF  M S   +LP  ITFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFV 328

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +LYACSH G+V+EG   F  M +++ + P ++H+ CMVDLL RAG++ +A + I  M +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPM 388

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           + +  +W  LLGAC +H + DLAE+A   +L+ +P + G YVLLSN+YA+  RW DV KI
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M R  ++K+PG + +EV N++H+F +GD +HPQ++ IY  L  ++++L L GY+P  
Sbjct: 449 RKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQI 508

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +    DV+EE K   L  HSEK+AIAF LI+TPE   IR++KNL+VC DCH  IK VS +
Sbjct: 509 SNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKV 568

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             R I+VRD +RFHHF+ G+CSC+DYW
Sbjct: 569 YNREIVVRDRSRFHHFKNGSCSCQDYW 595


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/603 (37%), Positives = 316/603 (52%), Gaps = 122/603 (20%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH   V  G + ++ V N L+ +YA    + DA+ +F  M+ +D V+W+ MV G+S+ 
Sbjct: 251 RQVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQN 310

Query: 137 ADF-----------------------------------INCFETFREFIRCGMQLDSYTL 161
             F                                       + FR+   C  + +  TL
Sbjct: 311 GRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTL 370

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGL------DIDQF-VCAALVDMYAKCKVIDDARQ 214
             ++ AC     ++ G+  H   +K  L      D D   V  AL+DMYAKCK ++ AR 
Sbjct: 371 MSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARA 430

Query: 215 LFDQM--PTRDLVTWTVMIGA--------------------------NKFLLDVIL---- 242
           +FD++    RD+VTWTVMIG                           N F +  +L    
Sbjct: 431 MFDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACA 490

Query: 243 ----------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                                          +IDMY+K G +D+A+ +FD M ++N +SW
Sbjct: 491 RLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSW 550

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           ++++  YG HG+ + A  +F  M    ++ + ITF+ +LYACSH+G+             
Sbjct: 551 TSLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM------------- 597

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           DF V P V+HY CMVDLLGRAGRL EA++LI  M +E    +W ALL ACRIH N +LAE
Sbjct: 598 DFGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAE 657

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
            AAK LLE +  N G Y LLSN+YANA RW+DVA+I  LM R  +KKIPGW+W++    +
Sbjct: 658 FAAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGM 717

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
             F VGD TH QS++IY  L  L ++++        NF LHDVD+E K   L  HSEKLA
Sbjct: 718 ETFYVGDRTHLQSQKIYETLADLIKRIK-------ANFSLHDVDDEEKGDQLSEHSEKLA 770

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           +A+ ++  P G  IRI KNLR+CGD HS I ++S I    II+RD++RFH F+ G+CSC+
Sbjct: 771 LAYAILTLPPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCK 830

Query: 575 DYW 577
            YW
Sbjct: 831 GYW 833



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 162/337 (48%), Gaps = 43/337 (12%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFS 134
            +H  ++  G  +N+ V N ++ +Y   KA+  A  +F+ +  R   DSV+W+ +V  +S
Sbjct: 147 SIHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYS 206

Query: 135 KVADFINCFETFREF-IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                      FRE  +  G+  D+  +  ++  C      + GR +H   ++SGL  D 
Sbjct: 207 HCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDV 266

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           FV  ALVDMYAKC  ++DA ++F++M  +D+VTW  M+                  Y++ 
Sbjct: 267 FVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTG----------------YSQN 310

Query: 254 GSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           G  + A  +F +MR++    +V++WS++I+ Y   G G +A+D+F  M   R  PN +T 
Sbjct: 311 GRFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTL 370

Query: 310 VSLLYACSHTGLVEEG--LRLFSSMW----------DDFAVRPDVKHYTCMVDLLGRAGR 357
           +SLL AC+  G +  G     +S  +          DD AV         ++D+  +   
Sbjct: 371 MSLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAV------INALIDMYAKCKS 424

Query: 358 LDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLA 393
           L+ A  + + +   ++D   W  ++G    H + + A
Sbjct: 425 LEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDANHA 461



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 63/351 (17%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIV-ANKLLYIYALHKALTDAHALF--NGMKERDSVSW 126
           C+ + Q + +H Q +  G L N       L+Y Y    ++T+A  L   N      SV W
Sbjct: 34  CKTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYW 93

Query: 127 -SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
            + ++               FR         D YT PFV +AC +  +  +G  IH  V+
Sbjct: 94  WNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVI 153

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---DLVTWT--VMIGANKFLLDV 240
           + G + + FVC A++ MY KCK +  AR++FD++  R   D VTW   V + ++ F+ +V
Sbjct: 154 RLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNV 213

Query: 241 ILG---------------TAVIDMYAKCG------------------------------- 254
            +                  V+++   CG                               
Sbjct: 214 AVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALV 273

Query: 255 -------SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
                   ++ A ++F+RMR K+V++W+AM+  Y  +G+ + AL LF  M   ++  + +
Sbjct: 274 DMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVV 333

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           T+ S++   +  G   E + +F  M      RP+V     ++      G L
Sbjct: 334 TWSSVISGYAQRGFGCEAMDVFRQMC-GCRCRPNVVTLMSLLSACASVGAL 383


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 332/592 (56%), Gaps = 61/592 (10%)

Query: 45  PMQMGPDCQFTRSVDPK--FFISSLLSC--RNIFQI-RQVHAQIVAGGTLTNLIVANKLL 99
           P++M  D Q ++ V P    F+  L +C   ++  I +Q+H Q    G  +N+ V N L+
Sbjct: 69  PIRMYMDMQISQ-VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLV 127

Query: 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159
            +YA    ++ A  +F+ + +R  VSW+ ++ G+ +  D +     F+E  +C ++ D  
Sbjct: 128 SMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWI 187

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
            L  V+ A  + +D+  G+ IH +V K GL+ +  +  +L  MYAK  +++ AR  F++M
Sbjct: 188 ALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRM 247

Query: 220 PT--------------------------RDLVTWTV------------------------ 229
                                       R+++T  +                        
Sbjct: 248 EKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR 307

Query: 230 ----MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                I  +++  D  + T +IDMYAKCGSI  AR +FDR+  K+V+ WS MI  YG HG
Sbjct: 308 WLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHG 367

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
            G++A+ L+  M  + V PN  TF+ LL AC ++GLV+EG  LF  M  D  + P  +HY
Sbjct: 368 HGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHY 426

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           +C+VDLLGRAG L++A   I SM ++    +WGALL AC+IH+ V L E+AA+ L    P
Sbjct: 427 SCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDP 486

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N GHYV LSN+YA+A  W  VA +R +MT++ L K  G + IE+   +  F VGD +HP
Sbjct: 487 YNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHP 546

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
           +S+EI+  L  L ++L+ AGY+P     LHD++ E     L  HSE+LA+A+G+I+T  G
Sbjct: 547 KSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPG 606

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T +RI KNLR C +CHS IK +S +  R II+RDA RFHHF+ G CSC D+W
Sbjct: 607 TTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 146/367 (39%), Gaps = 56/367 (15%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            + QV+ Q++  G      +  K +        +  AH  F  + E D + W+ ++ G++
Sbjct: 2   HLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYT 61

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +          + +     +  + +T  +V++AC       +G+ IH    K G   + F
Sbjct: 62  QKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVF 121

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKF------- 236
           V  +LV MYAK   I  AR +FD++  R +V+WT +I             N F       
Sbjct: 122 VQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN 181

Query: 237 -LLDVILGTAVIDMYAKCGSIDSAREI--------------------------------- 262
              D I   +V+  Y     +   + I                                 
Sbjct: 182 VKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVAR 241

Query: 263 --FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             F+RM + N+I W+AMI+ Y  +G G++A+ LF  M++  +  + IT  S + A +  G
Sbjct: 242 FFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVG 301

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +E   R           R D    T ++D+  + G +  A  + + ++ +KD  LW  +
Sbjct: 302 SLELA-RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA-DKDVVLWSVM 359

Query: 381 LGACRIH 387
           +    +H
Sbjct: 360 IMGYGLH 366


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 311/558 (55%), Gaps = 59/558 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   +    + ++ VAN LL  Y+ H  +  A  LF+ M E D VS+++++ G++  
Sbjct: 264 QQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWN 323

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             +   F+ F+     G   D    PF  ++       ++ MGR  H   + +    +  
Sbjct: 324 GQYEKSFDLFKRL--QGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQ 381

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW--------------------------- 227
           V  ALVDMYAKC+  +DA ++F  +  R+ V W                           
Sbjct: 382 VGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNREN 441

Query: 228 ----------TVMIGAN-----------------KFLLDVILGTAVIDMYAKCGSIDSAR 260
                     T+   AN                   L  V  G+ ++DMYA CGS+  A 
Sbjct: 442 VHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAI 501

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           E+F  M  +N++ W+A+I+AY  +G  +     F  M+ S + P+ ++F+S+L ACSH G
Sbjct: 502 EVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRG 561

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           LVE+ L  F+SM   + + P  KHY  M+D+L R+GR +EA  LI  M  E DE +W ++
Sbjct: 562 LVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSV 621

Query: 381 LGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           L +CRIHKN DLA+ AA  L +    ++   YV +SN+YA AG+W++ AK++  M  R +
Sbjct: 622 LNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGV 681

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK+  ++W+E+++++H F+  D THPQ+E+I R + +L E ++  GY PDT+  L +VDE
Sbjct: 682 KKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDE 741

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E+K+ +L  HSE+LAIAF LI TPEG+ I IMKNLR C DCH+ IK +S I  R I VRD
Sbjct: 742 EMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRD 801

Query: 560 ANRFHHFEGGACSCRDYW 577
           ++RFHHF  G+CSC DYW
Sbjct: 802 SSRFHHFRDGSCSCGDYW 819



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 107/494 (21%), Positives = 199/494 (40%), Gaps = 106/494 (21%)

Query: 39  PMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98
           P++ R+ ++ G D + +R     F +  L+    I + RQ+  ++       N    N +
Sbjct: 32  PVDARI-VKTGFDPEISRF---NFKLKDLVRANQIAKARQLFDEM----PYRNTSSVNMM 83

Query: 99  LYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS 158
           +  Y   + L  A  LF  M  R+ VSW++M+GG+S+       F  + E  R G++ D 
Sbjct: 84  VSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDH 143

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
            T   ++    D   +     IH  +++ G      V  +LVD Y K   +D A QLF +
Sbjct: 144 ITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSE 203

Query: 219 MPTRDLVTWTV-----------------------------------MIGAN--------- 234
           MPT+D V++ V                                   M+G +         
Sbjct: 204 MPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFG 263

Query: 235 ----------KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                      ++ D+ +  A++D Y+K   ID A+ +FD M + + +S++ +I  Y ++
Sbjct: 264 QQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWN 323

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-----------SHTGLV----------- 322
           GQ +K+ DLF  +  +        F ++L              +H   V           
Sbjct: 324 GQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVG 383

Query: 323 -------------EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
                        E+  R+F+++    A R  V  +T ++ +  + G  +EALK+ + M+
Sbjct: 384 NALVDMYAKCEKFEDANRIFANL----AYRNSVP-WTAIISIYVQKGFHEEALKMFKEMN 438

Query: 370 VEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY-VLLSNVYANAGRWQ 425
            E    D+  + + L A     +V L +    S++     +      +L ++YAN G  +
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMK 498

Query: 426 DVAKIRDLMTRRRL 439
           D  ++   M  R +
Sbjct: 499 DAIEVFKEMPDRNI 512


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/516 (38%), Positives = 303/516 (58%), Gaps = 46/516 (8%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F  S++L+ +      ++HAQ +    + +  V   LL  Y     + +A  +F  ++E+
Sbjct: 11  FTYSTILTAQPGVSPFEMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEK 70

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D V+WS M+ G++++ D       F +  +  ++ + YT   +I AC             
Sbjct: 71  DIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACA------------ 118

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
                                 A    ++  +QL           W++    ++F   + 
Sbjct: 119 ----------------------APTAGVEQGKQLH---------AWSI---KSRFNNALC 144

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           + +A++ MY+K G I+SA E+F R R+++++SW+++I+ Y  HG G+KAL++F  M    
Sbjct: 145 VSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQN 204

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  + +TF+ ++ AC+HTGL  EG R F  M  D  + P ++HY+CMVDL GRAG L +A
Sbjct: 205 LEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKA 264

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           +++I  M       +W  LL A  IH+N+++ ++AA  L+  QPQNP  YVLL+N+YA+ 
Sbjct: 265 MEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASV 324

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           G W++ AK+R LM  +++KK+ G++WIEV+NK + F  GD +HP S +IY  L  LS +L
Sbjct: 325 GNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQL 384

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           + AGY PDT++   DVDEE K   L  HSE+LAIAFGLI TP GT ++I+KNLRVCGDCH
Sbjct: 385 KGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCH 444

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S IK +S +  R I+VRD+NRFHHF+GG CSC DYW
Sbjct: 445 SVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 320/583 (54%), Gaps = 58/583 (9%)

Query: 53  QFTRSVDPKFFISSLL---SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           +++  V   F +SS+L   S    F + RQ+H  ++     ++  +   L+ +YA +  L
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            DA  +F+ M  RD +  + ++ G S           F E  + G+ ++  TL  V+++ 
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD----------------- 211
              +     R +H + +K G   D  V   L+D Y KC  + D                 
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 212 --------------ARQLFDQMPTR----DLVTWTVMIGA-------------------N 234
                         A +LF +M  +    D    + ++ A                    
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           +F+ D   G A++  YAKCGSI+ A   F  + ++ V+SWSAMI     HG GK+AL+LF
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+   + PN IT  S+L AC+H GLV+E  R F+SM + F +    +HY+CM+DLLGR
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG+LD+A++L+ SM  + +  +WGALLGA R+HK+ +L ++AA+ L   +P+  G +VLL
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           +N YA+AG W +VAK+R LM    +KK P  +WIEV++K+H F VGD +HP ++EIY  L
Sbjct: 715 ANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
           V L + +  AG++P+ + +LHD+D   K   L  HSE+LA+AF L++TP G  IR+ KNL
Sbjct: 775 VELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNL 834

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+C DCH   K +S I  R II+RD NRFHHF  G CSC DYW
Sbjct: 835 RICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 172/415 (41%), Gaps = 88/415 (21%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KERDSVSWSVMVGGFSKV 136
           QVHA  +A G  +++ VAN L+ +Y     + DA  +FN    ER++VSW+ ++  + K 
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +  + F E +  G+Q   +    V+ AC   ++I  GR +H +V++ G D D F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            ALVDMY K   +D A  +F++MP  D+V+W  +I                         
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            N F L  IL                              G  ++DMYAK   +D AR++
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS----- 317
           FD M  +++I  +A+I+   + G+  +AL LF  +    +  NR T  ++L + +     
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAA 420

Query: 318 ------HTGLVEEGL--------RLFSSMWD-----------DFAVRPDVKHYTCMVDLL 352
                 H   V+ G          L  S W            +     D+   T M+  L
Sbjct: 421 STTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITAL 480

Query: 353 GRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
            +    + A+KL   M    +E D  +  +LL AC      +  +     L++RQ
Sbjct: 481 SQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 69/412 (16%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +++    RNI   RQVHA +V  G   ++  AN L+ +Y     +  A  +F  M + D 
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ ++ G           E   +    G+  + +TL  +++AC       +GR IH  
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------ 231
           ++K+  D D ++   LVDMYAK   +DDAR++FD M  RDL+    +I            
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388

Query: 232 ------------GANK------------------------------FLLDVILGTAVIDM 249
                       G N+                              F+ D  +   +ID 
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDS 448

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y KC  +  A  +F+     ++I+ ++MI A      G+ A+ LF  ML   + P+    
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 310 VSLLYACSHTGLVEEGLRLFSS------MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            SLL AC+     E+G ++ +       M D FA    V  Y        + G +++A  
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA-------KCGSIEDAEL 561

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
              S+  E+    W A++G    H +   A      +++ +  NP H  + S
Sbjct: 562 AFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTS 611



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 155/364 (42%), Gaps = 66/364 (18%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            +HA ++  G+L +    N L+  Y+  +    A  +F+ + +   VSWS +V  +S   
Sbjct: 25  HLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
              +  + F      G+  + + LP V++   D +   +G  +H + + +G   D FV  
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVFVAN 139

Query: 198 ALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGA---NKFLLDVI--LG-------- 243
           ALV MY     +DDAR++F++  + R+ V+W  ++ A   N    D I   G        
Sbjct: 140 ALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQ 199

Query: 244 ------TAVIDMYAKCGSIDSAREI----------------------------------- 262
                 + V++      +I++ R++                                   
Sbjct: 200 PTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVI 259

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F++M   +V+SW+A+I+    +G   +A++L   M  S ++PN  T  S+L ACS  G  
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 323 EEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           + G ++   M        D   Y    +VD+  +   LD+A K+ + M   +D  L  AL
Sbjct: 320 DLGRQIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNAL 375

Query: 381 LGAC 384
           +  C
Sbjct: 376 ISGC 379


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 332/592 (56%), Gaps = 61/592 (10%)

Query: 45  PMQMGPDCQFTRSVDPK--FFISSLLSC--RNIFQI-RQVHAQIVAGGTLTNLIVANKLL 99
           P++M  D Q ++ V P    F+  L +C   ++  I +Q+H Q    G  +N+ V N L+
Sbjct: 84  PIRMYMDMQISQ-VHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLV 142

Query: 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159
            +YA    ++ A  +F+ + +R  VSW+ ++ G+ +  D +     F+E  +C ++ D  
Sbjct: 143 SMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWI 202

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
            L  V+ A  + +D+  G+ IH +V K GL+ +  +  +L  MYAK  +++ AR  F++M
Sbjct: 203 ALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRM 262

Query: 220 PT--------------------------RDLVTWTV------------------------ 229
                                       R+++T  +                        
Sbjct: 263 EKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELAR 322

Query: 230 ----MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                I  +++  D  + T +IDMYAKCGSI  AR +FDR+  K+V+ WS MI  YG HG
Sbjct: 323 WLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHG 382

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
            G++A+ L+  M  + V PN  TF+ LL AC ++GLV+EG  LF  M  D  + P  +HY
Sbjct: 383 HGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHY 441

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           +C+VDLLGRAG L++A   I SM ++    +WGALL AC+IH+ V L E+AA+ L    P
Sbjct: 442 SCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDP 501

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N GHYV LSN+YA+A  W  VA +R +MT++ L K  G + IE+   +  F VGD +HP
Sbjct: 502 YNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHP 561

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
           +S+EI+  L  L ++L+ AGY+P     LHD++ E     L  HSE+LA+A+G+I+T  G
Sbjct: 562 KSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPG 621

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T +RI KNLR C +CHS IK +S +  R II+RDA RFHHF+ G CSC D+W
Sbjct: 622 TTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 57/382 (14%)

Query: 60  PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           P F+ SS +    +  + QV+ Q++  G      +  K +        +  AH  F  + 
Sbjct: 3   PAFWGSSWMFML-LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVS 61

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           E D + W+ ++ G+++          + +     +  + +T  +V++AC       +G+ 
Sbjct: 62  EPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQ 121

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           IH    K G   + FV  +LV MYAK   I  AR +FD++  R +V+WT +I        
Sbjct: 122 IHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGD 181

Query: 234 -----NKF--------LLDVILGTAVIDMYAKCGSIDSAREI------------------ 262
                N F          D I   +V+  Y     +   + I                  
Sbjct: 182 PMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVIS 241

Query: 263 -----------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
                            F+RM + N+I W+AMI+ Y  +G G++A+ LF  M++  +  +
Sbjct: 242 LTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVD 301

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            IT  S + A +  G +E   R           R D    T ++D+  + G +  A  + 
Sbjct: 302 SITMRSAVLASAQVGSLELA-RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVF 360

Query: 366 ESMSVEKDEGLWGALLGACRIH 387
           + ++ +KD  LW  ++    +H
Sbjct: 361 DRVA-DKDVVLWSVMIMGYGLH 381


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/569 (35%), Positives = 320/569 (56%), Gaps = 55/569 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FI++    +N+   R+VHA + +     +  + N L+++Y    ++ +A  +F+ M+ +D
Sbjct: 57  FITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKD 116

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            VSW+ ++ G+++              ++   + + +T   +++A     D  +GR IH 
Sbjct: 117 MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHA 176

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD------------------- 223
           + +K     D +V +AL+DMYA+C ++D A  +FD++ +++                   
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGET 236

Query: 224 -LVTWTVMI----GANKFLLDVIL------------------------------GTAVID 248
            L+T+  M+     A  F    +                               G  ++D
Sbjct: 237 ALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLD 296

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAK GS+  AR++FDR+  K++++W+ M+ A+  +G GK+A+  F  M  S +  N++T
Sbjct: 297 MYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVT 356

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +L ACSH GLV+EG R F  M  ++ + P++ H+  +V LLGRAG L+ AL  I  M
Sbjct: 357 FLCILTACSHGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKM 415

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +E    +WGALL ACR+HKN  + + AA  + E  P + G  VLL N+YA+ G+W   A
Sbjct: 416 PIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAA 475

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           ++R +M    +KK P  +W+E+EN +H F   D THP++EEIY+M   +S+K+   GY+P
Sbjct: 476 RVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKEGYVP 535

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           D ++ L  VD++ +  NL  HSEKLA+AF LI  P G  IRIMKN+R+CGDCHS  K++S
Sbjct: 536 DMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAFKYIS 595

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  R I+VRD NRFHHF  G+CSC DYW
Sbjct: 596 KVFGREIVVRDTNRFHHFSNGSCSCADYW 624


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/496 (41%), Positives = 291/496 (58%), Gaps = 47/496 (9%)

Query: 82  QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
           ++  G  + +L+  N +++ YA+   +  A  +F+G ++RD+ SWS M+  ++K      
Sbjct: 44  KVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKE 103

Query: 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201
             E +RE     +  D  TL  V+ AC D   + +G  +H  V  + +++D  +  AL+D
Sbjct: 104 ALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALID 163

Query: 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
           MYAKC  I+ A+++FD+MP +D+ TW+ M          I+G A                
Sbjct: 164 MYAKCGDIESAQRVFDRMPEKDVQTWSSM----------IIGLA---------------- 197

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
                                 HG G ++L LF  M+S  + PN +TFV +L AC+H GL
Sbjct: 198 ---------------------NHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGL 236

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V EG + F SM +   + P V+HY CMVDLLGR+G ++EA +LI SM+ E D  +W ALL
Sbjct: 237 VSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACRIHKNV++AE A   L    P   GHYVLLSN+YA A  W+ VA++R  + R  +++
Sbjct: 297 GACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQR 356

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           IPG + IE + KIH+F  GD  HP+S+EIYR+L  + ++L+ AGY P T   L D+DE+ 
Sbjct: 357 IPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQS 416

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K  +L  HSEKLAIAF L+ TP  + IRI KNLR C DCHS +K +S +  R +IVRD N
Sbjct: 417 KERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRN 476

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC+DYW
Sbjct: 477 RFHHFSEGQCSCKDYW 492



 Score = 47.0 bits (110), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 24/216 (11%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           +VH  + +     +L +   L+ +YA    +  A  +F+ M E+D  +WS M+ G +   
Sbjct: 141 EVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG 200

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQF 194
                   F + I  GM+ +  T   V+ AC     +  G +    +    G++  ++ +
Sbjct: 201 LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHY 260

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI------ 247
            C  +VD+  +   +++ARQL   M    D + W  ++GA +   +V +    +      
Sbjct: 261 GC--MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVL 318

Query: 248 ------------DMYAKCGSIDSAREIFDRMRQKNV 271
                       ++YA+  S +   E+   +R+ N+
Sbjct: 319 DPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNI 354


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 311/586 (53%), Gaps = 85/586 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H  ++  G   N+ V   L+ +Y L   L  A  +F+   + D ++W++++  ++KV
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F      F       +   + TL  V+ AC   KD+  G+ +H  V    ++ +  + 
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 278

Query: 197 AALVDMYAKCKV-------------------------------IDDARQLFDQMPTRD-- 223
            A++DMYA C                                 ID AR  FD+MP +D  
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 338

Query: 224 ---------------------------------------LVTWTVMIGA----------- 233
                                                  ++T    +GA           
Sbjct: 339 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 398

Query: 234 --NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
             NK   D+ +  A+IDMY KCG +D A  IF  M Q++  +W+AMI     +G G+KAL
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
           D+F  ML + +LP+ IT++ +L AC+HTGLV++G + F  M     + P++ HY C+VDL
Sbjct: 459 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           L RAGRL EA ++IE+M ++ +  +WGALL  CR+++  D+AEM  K +LE +P N   Y
Sbjct: 519 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 578

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           VLL N+YA   RW D+ ++R +M  + +KK PG + IE+  ++H+F  GD +HPQ++ I 
Sbjct: 579 VLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNID 638

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  +++ L+LAGY PD +    D+ EE K  +++ HSEKLAIAFGLI +P G  IRI 
Sbjct: 639 AKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIT 698

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+C DCH+  K VS +  R +IVRD  RFHHF+ G CSC+DYW
Sbjct: 699 KNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/437 (27%), Positives = 190/437 (43%), Gaps = 93/437 (21%)

Query: 35  HEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNL 92
           H ++   P+    +       +S  P     IS L +C ++ Q++QVH Q +  G   N 
Sbjct: 12  HHRHVKKPKQMTTIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANP 71

Query: 93  IVANKLLYIYALHKA--LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC-FETFREF 149
           ++ N+++     H+      A  LF+ + E +   W+ M+ G+S++ DF       + E 
Sbjct: 72  VLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRL-DFPQLGVSLYLEM 130

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           +R G++ D YT PF+ +       +  GR +H  VLK GL  + FV  ALV MY  C  +
Sbjct: 131 LRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQL 190

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA----NKF----------------------------- 236
           D AR +FD  P  D++TW ++I A     KF                             
Sbjct: 191 DTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSAC 250

Query: 237 --LLDVILGTAV-------------------IDMYAKCGSIDS----------------- 258
             L D+  G  V                   IDMYA CG +DS                 
Sbjct: 251 SKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWT 310

Query: 259 --------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
                         AR  FD+M +K+ +SW+AMI  Y    + K+AL+LF  M ++ V P
Sbjct: 311 TIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKP 370

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           +  T VS+L AC+H G +E G     +  D   ++ D+     ++D+  + G +D+A  +
Sbjct: 371 DEFTMVSVLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESI 429

Query: 365 IESMSVEKDEGLWGALL 381
              MS ++D+  W A++
Sbjct: 430 FREMS-QRDKFTWTAMI 445


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 319/592 (53%), Gaps = 91/592 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++HA+IVA G  ++L+VA  L+ +Y    +  +A  +F+ MK+RD VSW+VM+G + + 
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            DF    E +++    G +    T   ++ AC   K +  GRL+H  +L+ GLD +  V 
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 197 AALVDMYAKCKVIDDA----------------------------------RQLFDQMPTR 222
            ALV+MYAKC  +++A                                  R++FD++ +R
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 223 DLVTWTV--------------------MIGA----------------------------- 233
           D + W                      M GA                             
Sbjct: 407 DTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKAL 466

Query: 234 ------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                 ++   +V++   +I+MYA+CGS++ A  +F   ++K V+SW+AM+AA+  +G+ 
Sbjct: 467 HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRY 526

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
            +ALDLF  M    V P+ +T+ S+L+ C+H G +E+G R F+ M +   + P   H+  
Sbjct: 527 AEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAA 586

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVDLLGR+GRL +A +L+ESM  E D   W   L ACRIH  ++L E AA+ + E  P +
Sbjct: 587 MVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSS 646

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
              Y+ +SN+YA  G W+ VA +R  M  R LKK+PG ++IEV+ K+H+FS G   HP++
Sbjct: 647 TAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRT 706

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT-PEGT 526
           +EI   L  L   +  AGY+PDT   LHDV E  K   L  HSEK+AIAFGL+++   G 
Sbjct: 707 DEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGE 766

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG-GACSCRDYW 577
            IR++KNLRVC DCH+  K ++ I  R II+RD NRFH F   G CSC DYW
Sbjct: 767 PIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 188/415 (45%), Gaps = 92/415 (22%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
            D   F+S L +C ++ Q R++H ++   G  +   +AN L+ +YA   ++ DA  +F  
Sbjct: 108 TDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQS 167

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           ++ RD  SW+ ++   S+  D+      F+E ++C M+ +S T   VI      + +  G
Sbjct: 168 LQTRDETSWNAVILAHSQSGDWSGALRIFKE-MKCDMKPNSTTYINVISGFSTPEVLPEG 226

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
           R IH  ++ +G D D  V  AL++MY KC    +AR++FD+M  RD+V+W VMIG     
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 234 --------------------NKFLLDVILG------------------------------ 243
                                K     ILG                              
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK--------------- 288
           TA+++MYAKCGS++ AR++F+ M+ ++ ++WS +I AY  +G GK               
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR 406

Query: 289 -------------------KALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRL 328
                               A+ +F  M  +  L P+ +TF+++L AC+  G + E ++ 
Sbjct: 407 DTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKA 465

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             +   +  +  +V     ++++  R G L+EA +L  + + EK    W A++ A
Sbjct: 466 LHAQISESELESNVVVTNTLINMYARCGSLEEAERLF-AAAKEKTVVSWTAMVAA 519



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 19/173 (10%)

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAAYGYHGQGK 288
           I  ++F  D ++G A+I MY KC S+  AR +F+ M  RQ+NV+SW+AMIAAY  +G   
Sbjct: 33  IRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHST 92

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE-GLRLFSSMWDDFAVRPDVKHYTC 347
           +AL L+  M    +  + +TFVS+L ACS      E   R+F S  D F    +      
Sbjct: 93  EALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLANA----- 147

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL----------GACRIHKNV 390
           +V +  R G + +A ++ +S+   +DE  W A++          GA RI K +
Sbjct: 148 LVTMYARFGSVGDAKRMFQSLQT-RDETSWNAVILAHSQSGDWSGALRIFKEM 199



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 128/293 (43%), Gaps = 58/293 (19%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           Q D+ T   V+ +C    D+  GR +H+ +  S  + D  V  AL+ MY KC  + DAR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 215 LFDQMP--TRDLVTWTVMI------------------------GANKFLLDVILG----- 243
           +F+ M    R++V+W  MI                        G +      +LG     
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 244 ----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                  A++ MYA+ GS+  A+ +F  ++ ++  SW+A+I A+
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
              G    AL +F  M    + PN  T+++++   S   ++ EG ++ + +  +     D
Sbjct: 184 SQSGDWSGALRIFKEM-KCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDSD 241

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           +   T ++++ G+ G   EA ++ + M  ++D   W  ++G C + +N D  E
Sbjct: 242 LVVATALINMYGKCGSSHEAREVFDKMK-KRDMVSWNVMIG-CYV-QNGDFHE 291


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 311/586 (53%), Gaps = 85/586 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H  ++  G   N+ V   L+ +Y L   L  A  +F+   + D ++W++++  ++KV
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F      F       +   + TL  V+ AC   KD+  G+ +H  V    ++ +  + 
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 257

Query: 197 AALVDMYAKCKV-------------------------------IDDARQLFDQMPTRD-- 223
            A++DMYA C                                 ID AR  FD+MP +D  
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 317

Query: 224 ---------------------------------------LVTWTVMIGA----------- 233
                                                  ++T    +GA           
Sbjct: 318 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 377

Query: 234 --NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
             NK   D+ +  A+IDMY KCG +D A  IF  M Q++  +W+AMI     +G G+KAL
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
           D+F  ML + +LP+ IT++ +L AC+HTGLV++G + F  M     + P++ HY C+VDL
Sbjct: 438 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           L RAGRL EA ++IE+M ++ +  +WGALL  CR+++  D+AEM  K +LE +P N   Y
Sbjct: 498 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 557

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           VLL N+YA   RW D+ ++R +M  + +KK PG + IE+  ++H+F  GD +HPQ++ I 
Sbjct: 558 VLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNID 617

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  +++ L+LAGY PD +    D+ EE K  +++ HSEKLAIAFGLI +P G  IRI 
Sbjct: 618 AKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIT 677

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+C DCH+  K VS +  R +IVRD  RFHHF+ G CSC+DYW
Sbjct: 678 KNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 181/407 (44%), Gaps = 91/407 (22%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKE 120
            IS L +C ++ Q++QVH Q +  G   N ++ N+++     H+      A  LF+ + E
Sbjct: 21  LISLLETCESMDQLQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPE 80

Query: 121 RDSVSWSVMVGGFSKVADFINC-FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +   W+ M+ G+S++ DF       + E +R G++ D YT PF+ +       +  GR 
Sbjct: 81  PNLFIWNTMIRGYSRL-DFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQ 139

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----NK 235
           +H  VLK GL  + FV  ALV MY  C  +D AR +FD  P  D++TW ++I A     K
Sbjct: 140 LHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK 199

Query: 236 F-------------------------------LLDVILGTAV------------------ 246
           F                               L D+  G  V                  
Sbjct: 200 FEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENA 259

Query: 247 -IDMYAKCGSIDS-------------------------------AREIFDRMRQKNVISW 274
            IDMYA CG +DS                               AR  FD+M +K+ +SW
Sbjct: 260 MIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSW 319

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  Y    + K+AL+LF  M ++ V P+  T VS+L AC+H G +E G     +  D
Sbjct: 320 TAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELG-EWIRTYID 378

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
              ++ D+     ++D+  + G +D+A  +   MS ++D+  W A++
Sbjct: 379 RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QRDKFTWTAMI 424


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/583 (36%), Positives = 320/583 (54%), Gaps = 58/583 (9%)

Query: 53  QFTRSVDPKFFISSLL---SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           +++  V   F +SS+L   S    F + RQ+H  ++     ++  +   L+ +YA +  L
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            DA  +F+ M  RD +  + ++ G S           F E  + G+ ++  TL  V+++ 
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD----------------- 211
              +     R +H + +K G   D  V   L+D Y KC  + D                 
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 212 --------------ARQLFDQMPTR----DLVTWTVMIGA-------------------N 234
                         A +LF +M  +    D    + ++ A                    
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           +F+ D   G A++  YAKCGSI+ A   F  + ++ V+SWSAMI     HG GK+AL+LF
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+   + PN IT  S+L AC+H GLV+E  R F+SM + F +    +HY+CM+DLLGR
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG+LD+A++L+ SM  + +  +WGALLGA R+HK+ +L ++AA+ L   +P+  G +VLL
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           +N YA+AG W +VAK+R LM    +KK P  +WIEV++K+H F VGD +HP ++EIY  L
Sbjct: 715 ANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
           V L + +  AG++P+ + +LHD+D   K   L  HSE+LA+AF L++TP G  IR+ KNL
Sbjct: 775 VELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNL 834

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+C DCH   K +S I  R II+RD NRFHHF  G CSC DYW
Sbjct: 835 RICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 172/415 (41%), Gaps = 88/415 (21%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KERDSVSWSVMVGGFSKV 136
           QVHA  +A G  +++ VAN L+ +Y     + DA  +FN    ER++VSW+ ++  + K 
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +  + F E +  G+Q   +    V+ AC   ++I  GR +H +V++ G D D F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            ALVDMY K   +D A  +F++MP  D+V+W  +I                         
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            N F L  IL                              G  ++DMYAK   +D AR++
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS----- 317
           FD M  +++I  +A+I+   + G+  +AL LF  +    +  NR T  ++L + +     
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAA 420

Query: 318 ------HTGLVEEGL--------RLFSSMWD-----------DFAVRPDVKHYTCMVDLL 352
                 H   V+ G          L  S W            +     D+   T M+  L
Sbjct: 421 STTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITAL 480

Query: 353 GRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
            +    + A+KL   M    +E D  +  +LL AC      +  +     L++RQ
Sbjct: 481 SQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQ 535



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 168/412 (40%), Gaps = 69/412 (16%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +++    RNI   RQVHA +V  G   ++  AN L+ +Y     +  A  +F  M + D 
Sbjct: 209 VNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDV 268

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ ++ G           E   +    G+  + +TL  +++AC       +GR IH  
Sbjct: 269 VSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGF 328

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------ 231
           ++K+  D D ++   LVDMYAK   +DDAR++FD M  RDL+    +I            
Sbjct: 329 MIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEA 388

Query: 232 ------------GANK------------------------------FLLDVILGTAVIDM 249
                       G N+                              F+ D  +   +ID 
Sbjct: 389 LSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDS 448

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y KC  +  A  +F+     ++I+ ++MI A      G+ A+ LF  ML   + P+    
Sbjct: 449 YWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVL 508

Query: 310 VSLLYACSHTGLVEEGLRLFSS------MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            SLL AC+     E+G ++ +       M D FA    V  Y        + G +++A  
Sbjct: 509 SSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYA-------KCGSIEDAEL 561

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
              S+  E+    W A++G    H +   A      +++ +  NP H  + S
Sbjct: 562 AFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFGRMVD-EGINPNHITMTS 611



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 154/364 (42%), Gaps = 66/364 (18%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            +HA ++  G+L +    N L+  Y+  +    A   F+ + +   VSWS +V  +S   
Sbjct: 25  HLHASLLKSGSLASF--RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNG 82

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
              +  + F      G+  + + LP V++   D +   +G  +H + + +G   D FV  
Sbjct: 83  LPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVFVAN 139

Query: 198 ALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGA---NKFLLDVI--LG-------- 243
           ALV MY     +DDAR++F++  + R+ V+W  ++ A   N    D I   G        
Sbjct: 140 ALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQ 199

Query: 244 ------TAVIDMYAKCGSIDSAREI----------------------------------- 262
                 + V++      +I++ R++                                   
Sbjct: 200 PTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVI 259

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F++M   +V+SW+A+I+    +G   +A++L   M  S ++PN  T  S+L ACS  G  
Sbjct: 260 FEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAF 319

Query: 323 EEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           + G ++   M        D   Y    +VD+  +   LD+A K+ + M   +D  L  AL
Sbjct: 320 DLGRQIHGFM---IKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWM-FHRDLILCNAL 375

Query: 381 LGAC 384
           +  C
Sbjct: 376 ISGC 379


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/558 (37%), Positives = 320/558 (57%), Gaps = 55/558 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           +++Q HA +V  G   +  +  KLL +     ++     LF  + + DS  ++ ++   S
Sbjct: 25  RLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASS 84

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                ++    +R  +   +   +YT   VI+AC D   + +G ++H  V  SG   + F
Sbjct: 85  NFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSF 144

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-------------------------------- 222
           V AALV  YAK      AR++FD+MP R                                
Sbjct: 145 VQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESG 204

Query: 223 ---DLVTWTVMIGANKFL-------------------LDVILGTAVIDMYAKCGSIDSAR 260
              D  T+  ++ A   L                   ++V+L T++++M+++CG +  AR
Sbjct: 205 GEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRAR 264

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M + NV+SW+AMI+ YG HG G +A+++F  M +  V+PNR+T+V++L AC+H G
Sbjct: 265 AVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAG 324

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGLWGA 379
           L+ EG  +F+SM  ++ V P V+H+ CMVD+ GR G L+EA + +  +S E+    +W A
Sbjct: 325 LINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTA 384

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +LGAC++HKN DL    A++L+  +P+NPGHYVLLSN+YA AGR   V  +R++M +R L
Sbjct: 385 MLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGL 444

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK  G++ I+VEN+ + FS+GD +HP++ EIY  L  L  + + AGY P     +H+++E
Sbjct: 445 KKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPESAMHELEE 504

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E +   L  HSEKLA+AFGL+ T  G  +RI+KNLR+C DCHS IK +S +  R IIVRD
Sbjct: 505 EEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMNREIIVRD 564

Query: 560 ANRFHHFEGGACSCRDYW 577
             RFHHF  G+CSC DYW
Sbjct: 565 KLRFHHFREGSCSCSDYW 582


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 332/575 (57%), Gaps = 58/575 (10%)

Query: 61  KFFISSLLS-CRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALH---KALTDAHA 113
           ++ +SS+LS C  +   R   Q+H+  +  G  ++  V+  L+ +YA     ++L +A  
Sbjct: 255 QYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNARE 314

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           +FN M + + ++W+ ++ G+ +     N     F + +  G++ +  T   +++AC +  
Sbjct: 315 VFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLG 374

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT---- 228
           D   GR IH   +KS L     V  ALV MYA+   I++AR  FDQ+  +++V+++    
Sbjct: 375 DQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLD 434

Query: 229 ---------------VMIGANKFLL------------------------------DVILG 243
                          + +G + F                                D  +G
Sbjct: 435 GDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIG 494

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            +++ MY++CG +  A ++FD M   NVISW++MI+    HG   +AL+LF  M+++ V 
Sbjct: 495 NSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVK 554

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN +T++++L ACSH GLV+EG   F  M     + P ++HY CMVDLLGR+G +++AL 
Sbjct: 555 PNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALD 614

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
            I  M  + D  +W  LLGAC+ H N+D+ E+AA  +++ +PQ+P  YVLLSN+YA AG 
Sbjct: 615 FINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGL 674

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W  VA+IR LM  + L K  G +W+ V+N IH+F  GD++HPQ+EEIY  L TL  ++++
Sbjct: 675 WDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKV 734

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH-IRIMKNLRVCGDCHS 542
            GY+PDT+  LHD+ +E+K   L  HSEK+A+AFGLI+    T  IRI KNLRVC DCHS
Sbjct: 735 MGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHS 794

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +K+VS  T R II+RD+NRFH  + G CSC +YW
Sbjct: 795 ALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 162/353 (45%), Gaps = 73/353 (20%)

Query: 77  RQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGG 132
           R +   ++  G+L  T+ +VAN LL +Y+   A+  A ++F+GM    RD VSW+ M   
Sbjct: 67  RALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI-VMGRLIHDIVLKSGL-D 190
            S+          F E +  G+  +++TL    +AC   +   + G  +  +V K G   
Sbjct: 127 LSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWG 186

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDV 240
            D  V  AL+DM+AK   +   R++FD +  R +V WT++I           A +  LD+
Sbjct: 187 TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDM 246

Query: 241 I--------------------LGT------------------------AVIDMYAKC--- 253
           +                    LG+                         ++DMYAK    
Sbjct: 247 LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNG 306

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITFVSL 312
            S+ +ARE+F+RM + NV++W+A+++ Y   G Q  + + LF  ML+  + PN IT+ S+
Sbjct: 307 QSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSM 366

Query: 313 LYACSHTGLVEEGLRLFS----SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           L AC++ G  + G ++ +    S   D  V  +      +V +   +G ++EA
Sbjct: 367 LKACANLGDQDSGRQIHTHCVKSNLADLNVVGNA-----LVSMYAESGSIEEA 414



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 111/247 (44%), Gaps = 69/247 (27%)

Query: 173 DIVMGRLIHDIVLKSG--LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT--RDLVTWT 228
           DI +GR +   +L++G  L+ D  V  +L+ +Y+KC  +  AR +FD MP   RDLV+WT
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 229 VMI------GA------------------NKFLL-------------------------- 238
            M       GA                  N F L                          
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFK 181

Query: 239 ------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                 DV +G A+IDM+AK G + + R +FD + ++ V+ W+ +I  Y   G   +A++
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVE 241

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC----M 348
           LF  ML +   P++ T  S+L AC+  G    G +L S      A+R  ++  +C    +
Sbjct: 242 LFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHS-----LALRLGLESDSCVSCGL 296

Query: 349 VDLLGRA 355
           VD+  ++
Sbjct: 297 VDMYAKS 303


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/558 (37%), Positives = 320/558 (57%), Gaps = 55/558 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           +++Q HA +V  G   +  +  KLL +     ++     LF  + + DS  ++ ++   S
Sbjct: 25  RLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASS 84

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K    ++    +R  +   +   +YT   VI+AC D   + +G L+H  V  SG   D F
Sbjct: 85  KFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSF 144

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-------------------------------- 222
           V AAL+  YAK      AR++FD+MP R                                
Sbjct: 145 VQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESR 204

Query: 223 ---DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAR 260
              D  T+  ++ A                   +   ++V+L T++++M+++CG +  AR
Sbjct: 205 VEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRAR 264

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F  M + NV+ W+AMI+ YG HG G +A+++F  M +  V+PN +TFV++L AC+H G
Sbjct: 265 AVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAG 324

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGA 379
           L++EG  +F+SM  ++ V P V+H+ CMVD+ GR G L+EA + ++ + S E    +W A
Sbjct: 325 LIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTA 384

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +LGAC++HKN DL    A++L+  +P+NPGHYVLLSN+YA AGR   V  +R++M +R L
Sbjct: 385 MLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGL 444

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK  G++ I+V+N+ + FS+GD +HP++ EIY  L  L  + + AGY P     +H+++ 
Sbjct: 445 KKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEG 504

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E +   L  HSEKLA+AFGL+ T +G  +RI+KNLR+C DCHS IK +SA+  R IIVRD
Sbjct: 505 EEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRD 564

Query: 560 ANRFHHFEGGACSCRDYW 577
             RFHHF  G+CSC DYW
Sbjct: 565 KLRFHHFREGSCSCSDYW 582



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 28/264 (10%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLT 90
           G+EQN +            +     D   F+S L +C  +  +     +H  IV  G   
Sbjct: 183 GYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITM 242

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++A  L+ +++    +  A A+F  M E + V W+ M+ G+      +   E F    
Sbjct: 243 NVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMK 302

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGR-LIHDIVLKSGL--DIDQFVCAALVDMYAKCK 207
             G+  +S T   V+ AC     I  GR +   +  + G+   ++  VC  +VDM+ +  
Sbjct: 303 ARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVC--MVDMFGRGG 360

Query: 208 VIDDARQLFDQMPTRDLV--TWTVMIGANKFLLDVILGTAVID----------------- 248
           ++++A Q    + + +LV   WT M+GA K   +  LG  V +                 
Sbjct: 361 LLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLS 420

Query: 249 -MYAKCGSIDSAREIFDRMRQKNV 271
            MYA  G +D    + + M Q+ +
Sbjct: 421 NMYALAGRMDRVESVRNVMIQRGL 444


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/517 (39%), Positives = 301/517 (58%), Gaps = 48/517 (9%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F  S++L+        Q+HAQ++        IV   LL  Y+      +A ++F  + ++
Sbjct: 409 FTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQK 468

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLI 180
           D VSWS M+  +++  D       F +    G++ + +T+  VI AC      + +GR  
Sbjct: 469 DVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQF 528

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H I +K                  +C    DA                           +
Sbjct: 529 HAISIKH-----------------RCH---DA---------------------------L 541

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + +A++ MYA+ GSI+SA+ IF+R   ++++SW++M++ Y  HG  +KALD+F  M + 
Sbjct: 542 CVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAE 601

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            +  + +TF+S++  C+H GLVEEG R F SM  D+ + P ++HY CMVDL  RAG+LDE
Sbjct: 602 GIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDE 661

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A+ LIE MS      +W  LLGAC++HKNV+L ++AA+ LL  +P +   YVLLSN+Y+ 
Sbjct: 662 AMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSA 721

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           AG+W++  ++R LM  +++KK  G +WI+++NK+H F   D +HP SE+IY  L  ++ K
Sbjct: 722 AGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTK 781

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           L+  GY PDT+F LH+V EE K   L  HSE+LA+AFGLIATP G  + I KNLRVCGDC
Sbjct: 782 LKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDC 841

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+ IK VS I  R I++RD +RFHHF  G CSC D+W
Sbjct: 842 HTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 137/294 (46%), Gaps = 27/294 (9%)

Query: 77  RQVHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +Q+H   +  G    ++ V   L+ +Y    ++ D   +F  M +R+ V+W+ ++ G+ +
Sbjct: 123 KQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQ 182

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                +  E F      G+  +S T   V+     +  + +GR +H   +K G     FV
Sbjct: 183 DGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFV 242

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG------------------ANKF 236
           C +L++MYAKC ++++AR +F  M TRD+V+W T+M G                  ++  
Sbjct: 243 CNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSIT 302

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW----SAMIAAYGYHGQGKKALD 292
           +L       VI + A    +  AR++   + ++   S+    +A++ AY   GQ   ALD
Sbjct: 303 MLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALD 362

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           +F +M  S+   N +++ +++  C   G V     LFS M +D     D  + T
Sbjct: 363 IFLLMSGSQ---NVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYST 413



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 141/308 (45%), Gaps = 59/308 (19%)

Query: 143 FETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI-DQFVCAALV 200
            + F +  RC G ++    L  V++ C    D V+G+ +H + ++ G D  D  V  +LV
Sbjct: 87  LDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLV 146

Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---------------------------- 232
           DMY K   + D R++F+ MP R++VTWT ++                             
Sbjct: 147 DMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSV 206

Query: 233 ---------ANKFLLD-----------------VILGTAVIDMYAKCGSIDSAREIFDRM 266
                    A++ ++D                 V +  ++++MYAKCG ++ AR +F  M
Sbjct: 207 TFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGM 266

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
             ++++SW+ ++A    +G   +AL LF    SS  +  + T+ +++  C++   +    
Sbjct: 267 ETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLAR 326

Query: 327 RLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           +L SS+    F    +V   T ++D   +AG+L  AL +   MS  ++   W A++  C 
Sbjct: 327 QLHSSVLKRGFHSYGNV--MTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCI 384

Query: 386 IHKNVDLA 393
            + +V LA
Sbjct: 385 QNGDVPLA 392



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 101/240 (42%), Gaps = 48/240 (20%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+VHAQ V  G  + + V N L+ +YA    + +A  +F GM+ RD VSW+ ++ G    
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLN 284

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +   + F +                      R  I M              + Q   
Sbjct: 285 GHDLEALQLFHD---------------------SRSSITM--------------LTQSTY 309

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
           A ++ + A  K +  ARQL   +  R   ++  ++            TA++D Y+K G +
Sbjct: 310 ATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM------------TALMDAYSKAGQL 357

Query: 257 DSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
            +A +IF  M   +NV+SW+AMI     +G    A  LF  M    V PN  T+ ++L A
Sbjct: 358 GNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/641 (34%), Positives = 325/641 (50%), Gaps = 124/641 (19%)

Query: 61  KFFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYA------------- 103
           +F ++++LS   + Q     R+VH+ +V  G  + + VAN +L +Y              
Sbjct: 164 QFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFE 223

Query: 104 -----------------LHKALTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFET 145
                             H    D A +LF  M  R  VSW+ M+ G+++        + 
Sbjct: 224 RMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKL 283

Query: 146 FREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           F   +    M  D +T+  V+ AC +  ++ +G+ +H  +L++ +  +  V  AL+  YA
Sbjct: 284 FSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYA 343

Query: 205 KCKVIDDARQLFDQ---------------------------------MPTRDLVTWTVMI 231
           K   +++AR++ DQ                                 M  RD+V WT MI
Sbjct: 344 KSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMI 403

Query: 232 ------------------------GANKFLLDVILG------------------------ 243
                                     N + L  +L                         
Sbjct: 404 VGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLE 463

Query: 244 ------TAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                  A+I MYA+ GS   AR +FD++  +K  I+W++MI A   HGQG++A+ LF  
Sbjct: 464 RSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEE 523

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML + V P+RIT+V +L ACSH G V EG R +  + ++  + P++ HY CMVDLL RAG
Sbjct: 524 MLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAG 583

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
              EA + I  M VE D   WG+LL ACR+HKN +LAE+AA+ LL   P N G Y  ++N
Sbjct: 584 LFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIAN 643

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           VY+  GRW D A+I      + ++K  G++W  + +KIH F   D  HPQ + +Y M   
Sbjct: 644 VYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAAR 703

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           + E+++ AG++PD    LHDVD+E+K   L  HSEKLAIAFGLI+TPE T +R+MKNLRV
Sbjct: 704 MWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRV 763

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+ IK +S +T R IIVRDA RFHHF  G CSC+DYW
Sbjct: 764 CNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 27/288 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N LL ++A    L DA  +F  M ERD+VSW+VMV G ++   F    +T  +  
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G     +TL  V+ +C   +   +GR +H  V+K GL     V  ++++MY KC   +
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            A  +F++MP R + +W  M+  N  L                G +D A  +F+ M  ++
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHL----------------GRMDLAESLFESMPGRS 260

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++SW+AMIA Y  +G   KAL LF  ML  S + P+  T  S+L AC++ G V  G ++ 
Sbjct: 261 IVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVH 320

Query: 330 SSMWDDFAVRPDVKHYTCMVDLL----GRAGRLDEALKLIESMSVEKD 373
           +     + +R ++ + + + + L     ++G ++ A ++++  S+E D
Sbjct: 321 A-----YILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQ-SMETD 362



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 36/252 (14%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDARQLFDQM 219
           +++ C+   +   GR IH   +K+GL    ++C  L+  Y +       + DAR+LFD++
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 220 P--TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           P   R++ TW                 +++ M+AK G +  AR +F  M +++ +SW+ M
Sbjct: 92  PLARRNVFTW----------------NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVM 135

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +      G+  +A+     M +    P + T  ++L +C+ T     G ++ S     F 
Sbjct: 136 VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHS-----FV 190

Query: 338 VRPD----VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           V+      V     ++++ G+ G  + A  + E M V +    W A++        +DLA
Sbjct: 191 VKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPV-RSVSSWNAMVSLNTHLGRMDLA 249

Query: 394 EMAAKSLLERQP 405
           E    SL E  P
Sbjct: 250 E----SLFESMP 257


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/567 (36%), Positives = 315/567 (55%), Gaps = 66/567 (11%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +QVH  +   G     +V N ++ +Y+    + +A  +FN +  R+ +SW+ M+ G++
Sbjct: 22  QGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYT 81

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI--D 192
              +       FRE    G   D YT    ++AC        G  IH  +++ G      
Sbjct: 82  NERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQ 141

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------- 233
             V  ALVD+Y KC+ + +AR++FD++  + +++W+ +I                     
Sbjct: 142 SAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRE 201

Query: 234 -----NKFLLDVILG-------------------------------TAVIDMYAKCGSID 257
                + F+L  I+G                                +V+DMY KCG   
Sbjct: 202 SRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTV 261

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A  +F  M ++NV+SW+ MI  YG HG G KA++LF  M  + + P+ +T++++L ACS
Sbjct: 262 EADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACS 321

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H+GL++EG + FS +  +  ++P V+HY CMVDLLGR GRL EA  LIE M ++ + G+W
Sbjct: 322 HSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIW 381

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LL  CR+H +V++ +   + LL R+  NP +YV++SN+YA+AG W++  KIR+ + R+
Sbjct: 382 QTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRK 441

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHD 496
            LKK  G +W+E++ +IH F  GD  HP  EEI+ +L  + +++ E  GY+   NF LHD
Sbjct: 442 GLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSINFSLHD 501

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTH------IRIMKNLRVCGDCHSFIKHVSAI 550
           V+EE K+ +L  HSEKLAI  GL+    G        IRI KNLRVCGDCH+FIK +S +
Sbjct: 502 VEEESKMESLRVHSEKLAI--GLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKV 559

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
            +   +VRDANRFH FE G CSC DYW
Sbjct: 560 LKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 49/226 (21%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           +S  L  ++  C  R+ +  G+ +H +V K G D+   V  +++DMY+KC ++ +A ++F
Sbjct: 3   ESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVF 62

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
           + +P R++++W  M                                              
Sbjct: 63  NTLPVRNVISWNAM---------------------------------------------- 76

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW-DD 335
            IA Y     G++AL+LF  M     +P+  T+ S L ACS      EG+++ +++    
Sbjct: 77  -IAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHG 135

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           F           +VDL  +  R+ EA K+ + +  EK    W  L+
Sbjct: 136 FPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIE-EKSVMSWSTLI 180



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 29/258 (11%)

Query: 41  NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIF----QIRQVHA-QIVAGGTLTNLIVA 95
           N +  M +  + + +R     F +SS++     F    Q +Q+HA  I     L  + VA
Sbjct: 188 NLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVA 247

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L +Y       +A ALF  M ER+ VSW+VM+ G+ K        E F E    G++
Sbjct: 248 NSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIE 307

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVL---KSGLDIDQFVCAALVDMYAKCKVIDDA 212
            DS T   V+ AC     I  G+    I+    K    ++ + C  +VD+  +   + +A
Sbjct: 308 PDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYAC--MVDLLGRGGRLKEA 365

Query: 213 RQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTA------------------VIDMYAKC 253
           + L ++MP + ++  W  ++   +   DV +G                    V +MYA  
Sbjct: 366 KNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHA 425

Query: 254 GSIDSAREIFDRMRQKNV 271
           G    + +I + +++K +
Sbjct: 426 GYWKESEKIRETLKRKGL 443


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/645 (34%), Positives = 342/645 (53%), Gaps = 99/645 (15%)

Query: 22  SSTTAAIAL-----EPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI 76
           +STT A +L      P  H  +  NP+            +S+D K  IS L   R+I Q+
Sbjct: 16  ASTTFAASLPFSGPSPKPHPNSNSNPKS----------LKSLDQKQIISLLQRSRHINQV 65

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             +HAQ++  G   +  +  +LL   +   A+  A  +F      +   ++ ++ GF   
Sbjct: 66  LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 125

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +++   + +   +   +  D+Y +  +++AC  +  +  GR +H   LK G   ++ V 
Sbjct: 126 GNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVR 185

Query: 197 AALVDMYAKCKVIDDARQL------------------------------FDQMPTRDLVT 226
             ++++Y KC  + DAR++                              F ++  +D V 
Sbjct: 186 LRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC 245

Query: 227 WTVMIGA------------------------NKFL------------------------- 237
           WT MI                          N+F                          
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305

Query: 238 -----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                L++ +G A+I+MY++CGSID A+ +FD M+ ++VI+++ MI+    +G+ ++A++
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF +M+  R+ P  +TFV +L ACSH GLV+ G  +F SM  D+ V P ++HY CMVDLL
Sbjct: 366 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLL 425

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GR GRL+EA  LI +M +  D  + G LL AC++HKN++L E  AK L +R   + G YV
Sbjct: 426 GRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYV 485

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLS+VYA++G+W++ A++R  M    ++K PG + IEV N+IH+F +GD  HPQ E IY 
Sbjct: 486 LLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYE 545

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  L+  L L GY P+    L D+++  K   L  HSE+LAI +GLI+T   T IR+MK
Sbjct: 546 KLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMK 605

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCHS IK ++ ITRR I+VRD NRFH+FE GACSC DYW
Sbjct: 606 NLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 321/577 (55%), Gaps = 63/577 (10%)

Query: 60  PKFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           P+  +S+LL    SC +I   R++HA++       +  + ++L+  Y       DA  LF
Sbjct: 38  PEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLF 97

Query: 116 NGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           + M  +D VSW+ ++ GFS+     +  F T +      ++ +  T+  +I AC    D 
Sbjct: 98  DDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMK--FEMSVKPNEVTILSMISACNGALD- 154

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---- 230
             G+ IH   +K G  ++  V  +L++MY K   +  A +LF+ +P  + V+W  +    
Sbjct: 155 -AGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQ 213

Query: 231 -------------------------------------IGANK-------------FLLDV 240
                                                +G  K             F   +
Sbjct: 214 VTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKI 273

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + TA++D YAK G + ++  +F  +   + ++W+AM+A Y  HG G++A+ LF  M + 
Sbjct: 274 TIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANK 333

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+ +TF  LL ACSH+GLV EG   F+ M + + + P V HY+CMVDLLGR G L++
Sbjct: 334 GLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLND 393

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A ++I++M +E + G+WGALLGACR+H N++L +  A+ L+  +P +P +Y++LSN+Y+ 
Sbjct: 394 AYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSA 453

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           +  W+D AK+R L+  R LK+ PG++ IE  NK H F VGD +HP++E+IY  L  L  K
Sbjct: 454 SRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGK 513

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +  AGY   T + L DV+EEVK   +  HSEKLAIAFGL+ + EG  + I KNLR+CGDC
Sbjct: 514 IRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDC 573

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           HS  K +S I +R II+RD  RFHHF  G CSC DYW
Sbjct: 574 HSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 325/574 (56%), Gaps = 64/574 (11%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I++ +  ++I  ++++   +V  G   +  + N++L ++     + DA  LF+ M  R+
Sbjct: 138 LINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARN 197

Query: 123 SVSWSVMVGGFSKVADFINCFETF----REFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
           +VSW  ++ G+    +++  F  F     EF  CG +    T   +IRA    + I  GR
Sbjct: 198 AVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPR----TFATMIRASAGLEIIFPGR 253

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV------------- 225
            +H   +K+GL  D FV  AL+DMY+KC  ++DA  +FD+MP + +V             
Sbjct: 254 QLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHG 313

Query: 226 ----------------------TWTVMIGA-------------------NKFLLDVILGT 244
                                 T++++I                     N F LDV+  T
Sbjct: 314 YSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANT 373

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           A++D Y+K G +D AR +FDRM  +N+ISW+A+IA YG HG G++A+D+F  ML   ++P
Sbjct: 374 ALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMP 433

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N +TF+++L ACS +GL E G  +F SM  D  V+P   H+ CM++LLGR G LDEA  L
Sbjct: 434 NHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYAL 493

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I     +    +W ALL ACR+H N++L + AA+ L   +P+   +Y++L N+Y ++G+ 
Sbjct: 494 IRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKL 553

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           ++ A +   + R+ L+ +P  +WIEV N+ H F  GD  H Q E++   +  L   +   
Sbjct: 554 KEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKL 613

Query: 485 GYIP-DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           GY+P + NF L DVDE  +   +Y HSEKLAIA+GL+ T E T ++I+++ R+C DCHS 
Sbjct: 614 GYVPEEQNFMLPDVDENEEKIRMY-HSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSV 672

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IK ++ IT+R I++RDA+RFHHF  G+CSC DYW
Sbjct: 673 IKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 159/360 (44%), Gaps = 65/360 (18%)

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K  D +  FE F   +  G  +   T   +I AC   K I   + + + ++ +G + DQ+
Sbjct: 111 KYRDALEMFEIFE--LEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQY 168

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------NKFLLDVIL---- 242
           +   ++ M+ KC ++ DA +LFD+MP R+ V+W  +I            F L +++    
Sbjct: 169 MRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEF 228

Query: 243 ----------------GTAVI-----------------DMYAKC---------GSIDSAR 260
                           G  +I                 D++  C         GS++ A 
Sbjct: 229 YDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAH 288

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M  K ++ W+++IA Y  HG  ++ALDL+  M  S V  +  TF  ++  CS   
Sbjct: 289 CVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLA 348

Query: 321 LVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            V    ++ +S+  + F +  DV   T +VD   + G++D+A  + + MS  ++   W A
Sbjct: 349 SVARAKQVHASLVRNGFGL--DVVANTALVDFYSKWGKVDDARHVFDRMSC-RNIISWNA 405

Query: 380 LLGACRIHKNVDLA-EMAAKSLLERQPQNPGHYVLLSNVYAN--AGRWQDVAKIRDLMTR 436
           L+     H + + A +M  K L  R+   P H   L+ + A   +G ++   +I   MTR
Sbjct: 406 LIAGYGNHGHGEEAIDMFEKML--REGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTR 463


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/489 (40%), Positives = 282/489 (57%), Gaps = 47/489 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + +++V   +L  Y     +  A  +F  M  ++ V+W+ M+ G+ +     +  + F+ 
Sbjct: 226 MKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKT 285

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            I   ++ +  +L  V+  C +   + +GR +H +V KS L  D   C            
Sbjct: 286 MIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC------------ 333

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                              T++I MY KCG +DSA ++F  M +
Sbjct: 334 -----------------------------------TSLISMYCKCGDLDSAWKLFLEMPR 358

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           K+VI+W+AMI+ Y  HG G+KAL LF  M +  + P+ ITFV+++ AC+H G V+ G++ 
Sbjct: 359 KDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQY 418

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F SM  +F +     HYTC++DLLGRAGRLDEA+ LI+ M       ++G LLGACRIHK
Sbjct: 419 FKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHK 478

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N+DLAE AA++LL   P +   YV L+N+YA   +W  VAK+R +M    + KIPG++WI
Sbjct: 479 NLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWI 538

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
           E+++  H+F   D  HP+   I++ L  L  K++LAGY+PD  F LHDV+EE K   L  
Sbjct: 539 EIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLW 598

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSEKLAIAFGL+ T  GT IR+ KNLRVCGDCH  IK +SAI +R IIVRD  RFHHF  
Sbjct: 599 HSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRN 658

Query: 569 GACSCRDYW 577
           G CSC DYW
Sbjct: 659 GFCSCGDYW 667



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 28/317 (8%)

Query: 88  TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           T ++++  NK +  +     L  A  +F  M  R +V+W+ M+ G++KVA  +   E   
Sbjct: 69  TASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVK--EAHE 126

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL--IHDIVLKSGLDIDQFVCAALVDMYAK 205
            F +   + DS +   ++  C  R   V   L   + + +K   DI  +    L+  +A+
Sbjct: 127 LFDKIP-EPDSVSYNIML-VCYLRSYGVKAALAFFNKMPVK---DIASW--NTLISGFAQ 179

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMY 250
              +  A  LF  MP ++ V+W+ MI                 N  +  V++ TA++  Y
Sbjct: 180 NGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGY 239

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            K G ++ A  IF RM  KN+++W++MIA Y  + + +  L +F  M+ SRV PN ++  
Sbjct: 240 MKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLS 299

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L  CS+   +  G R    +     +  D    T ++ +  + G LD A KL   M  
Sbjct: 300 SVLLGCSNLSALPLG-RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP- 357

Query: 371 EKDEGLWGALLGACRIH 387
            KD   W A++     H
Sbjct: 358 RKDVITWNAMISGYAQH 374



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY-GYHGQGKKALDLFPMM 297
           DV+     I  + +   ++SAR +F++M  +  ++W+ M++ Y    G+ K+A +LF  +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                 P+ +++  +L     +  V+  L  F+ M     V+ D+  +  ++    + G+
Sbjct: 132 PE----PDSVSYNIMLVCYLRSYGVKAALAFFNKM----PVK-DIASWNTLISGFAQNGQ 182

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
           + +A  L   M  EK+   W A++     H +++ AE   K++
Sbjct: 183 MQKAFDLFSVMP-EKNGVSWSAMISGYVEHGDLEAAEELYKNV 224


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 330/603 (54%), Gaps = 87/603 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA-------- 113
           F + S    +   + +Q+H Q++  G   +L V   L+ +Y  +  L DA+         
Sbjct: 69  FLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHR 128

Query: 114 -----------------------LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
                                  LF+ +  +D VSW+ M+ G+++   +    E F E +
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T   V+ AC     I +GR +H  V   G D +  +  AL+D+Y+KC  ++
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 211 -------------------------------DARQLFDQM----PTRDLVTWTVMIGANK 235
                                          +A  LF +M     T + VT   ++ A  
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 236 FLLDVILG---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            L  + +G                     T++IDMYAKCG I++A ++F+ M  K++ SW
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 368

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   + DLF  M    + P+ ITFV LL ACSH+G+++ G  +F SM  
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 428

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG +G   EA ++I +M +E D  +W +LL AC++H NV+LAE
Sbjct: 429 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAE 488

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+NP  Y+LLSN+YA+AGRW+DVA+IR L+  + +KK+PG + IEV++ +
Sbjct: 489 SFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVV 548

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
            +F VGD  HPQ+ EIY ML  +   LE AG++PDT+  L +++EE K G L  HSEKLA
Sbjct: 549 FEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 608

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+T  GT + I+KNLRVC +CH   K +S I +R I+ RD  RFHHF  G CSC 
Sbjct: 609 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCN 668

Query: 575 DYW 577
           DYW
Sbjct: 669 DYW 671



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 169/325 (52%), Gaps = 26/325 (8%)

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            L  A ++F  ++E + + W+ M+ G +  +D ++    +   +  G+  +SYT PF+++
Sbjct: 13  GLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLK 72

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           +C   K    G+ IH  VLK G D+D +V  +L+ MY +   ++DA ++FD+   RD+V+
Sbjct: 73  SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           +T                A+I  YA  G I SA+++FD +  K+V+SW+AMI+ Y   G 
Sbjct: 133 YT----------------ALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGC 176

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            K+AL+LF  M+   V P+  T+V++L AC+H+G +E G R   S  DD     ++K   
Sbjct: 177 YKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELG-RQVHSWVDDHGFDSNLKIVN 235

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            ++DL  + G ++ A  L + +S  KD   W  L+G    H N+    +     + R  +
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSY-KDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGE 293

Query: 407 NPGHYVLLSNVYANA-------GRW 424
            P    +LS + A A       GRW
Sbjct: 294 TPNDVTMLSVLPACAHLGAIDIGRW 318


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 321/577 (55%), Gaps = 63/577 (10%)

Query: 60  PKFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           P+  +S+LL    SC +I   R++HA++       +  + ++L+  Y       DA  LF
Sbjct: 38  PEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLF 97

Query: 116 NGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           + M  +D VSW+ ++ GFS+     +  F T +      ++ +  T+  +I AC    D 
Sbjct: 98  DDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMK--FEMSVKPNEVTILSMISACSGALD- 154

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---- 230
             G+ IH   +K G  ++  V  +L++MY K   +  A +LF+ +P  + V+W  +    
Sbjct: 155 -AGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQ 213

Query: 231 -------------------------------------IGANK-------------FLLDV 240
                                                +G  K             F   +
Sbjct: 214 VTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKI 273

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            + TA++D YAK G + ++  +F  +   + ++W+AM+A Y  HG G++A+ LF  M + 
Sbjct: 274 TIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANK 333

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+ +TF  LL ACSH+GLV EG   F+ M + + + P V HY+CMVDLLGR G L++
Sbjct: 334 GLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLND 393

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A ++I++M +E + G+WGALLGACR+H N++L +  A+ L+  +P +P +Y++LSN+Y+ 
Sbjct: 394 AYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSA 453

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           +  W+D AK+R L+  R LK+ PG++ IE  NK H F VGD +HP++E+IY  L  L  K
Sbjct: 454 SRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGK 513

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +  AGY   T + L DV+EEVK   +  HSEKLAIAFGL+ + EG  + I KNLR+CGDC
Sbjct: 514 IRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDC 573

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           HS  K +S I +R II+RD  RFHHF  G CSC DYW
Sbjct: 574 HSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/510 (40%), Positives = 294/510 (57%), Gaps = 62/510 (12%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           ++ + N +L  Y     + +A  +F+GM  RD VSW+ M+ G++                
Sbjct: 115 DVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAV--------------- 159

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
                               R D+ M R I D       D D F  ++++  YAK +   
Sbjct: 160 --------------------RGDVGMAREIFD----GTRDRDAFSWSSMISAYAKGRCSK 195

Query: 211 DARQLFDQMPTR----DLVTWTVMIGA-------------------NKFLLDVILGTAVI 247
           +A +L+ +M       D ++   ++ A                   N+  +D+ LGTA++
Sbjct: 196 EALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALV 255

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG I+++ ++F  M  K+V++WS+MI     HG G  AL LF  M+S  + PN I
Sbjct: 256 DMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEI 315

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+ +L AC+H GLV +G + FSSM D   V P ++HY CMVDLLGRAG ++EA++LI S
Sbjct: 316 TFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRS 375

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M+ + D  +W  LLGACRIHKNV++AE A   L    P   GHYVLLSN+YA A  W+ V
Sbjct: 376 MTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGV 435

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           A++R  + R  ++++PG + IE EN +H+F  GD +HP+ EEIY+ML  + ++L  AGY 
Sbjct: 436 AEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYR 495

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P T+  L D+DE+ K   L  HSEKLAIAFGL+ TP  + +RI KNLR C DCHS IK +
Sbjct: 496 PMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLI 555

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S    R +IVRD NRFHHF  G CSC+DYW
Sbjct: 556 SLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 41/220 (18%), Positives = 95/220 (43%), Gaps = 32/220 (14%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           +VH  + +     ++ +   L+ +YA    + ++  +F+ M  +D ++WS M+ G +   
Sbjct: 234 EVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHG 293

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL-------IHDIVLKSGLD 190
              +    F E I  G+Q +  T   V+ AC     +  G+        +H +V +    
Sbjct: 294 LGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPR---- 349

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI-- 247
           ++ + C  +VD+  +   +++A +L   M  + D + W  ++GA +   +V +    +  
Sbjct: 350 MEHYGC--MVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAK 407

Query: 248 ----------------DMYAKCGSIDSAREIFDRMRQKNV 271
                           ++YA+  S +   E+   +R++N+
Sbjct: 408 LKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENI 447


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 316/543 (58%), Gaps = 56/543 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    L+  YA    +  A  +F+ +  +D VSW+ M+ G+++  +     E F+E +
Sbjct: 168 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 227

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+ AC     I +GR +H  +   G   +  +  AL+D+Y KC  ++
Sbjct: 228 KTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 211 -------------------------------DARQLFDQM----PTRDLVTWTVMIGANK 235
                                          +A  LF +M     + + VT   ++ A  
Sbjct: 288 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 347

Query: 236 FLLDVILG---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            L  + +G                     T++IDMYAKCG I++A+++FD +  +++ SW
Sbjct: 348 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 407

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   A D+F  M  + + P+ ITFV LL ACSH+G+++ G  +F SM +
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 467

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG +G   EA ++I +M +E D  +W +LL AC+++ NV+L E
Sbjct: 468 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGE 527

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+NPG YVLLSN+YA AGRW +VAKIR L+  + +KK+PG + IE+++ +
Sbjct: 528 SYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F +GD  HP++ EIY ML  +   LE AG++PDT+  L +++EE K G L  HSEKLA
Sbjct: 588 HEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 647

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+T  GT + I+KNLRVC +CH   K +S I +R II RD  RFHHF  G CSC 
Sbjct: 648 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 707

Query: 575 DYW 577
           DYW
Sbjct: 708 DYW 710



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/374 (30%), Positives = 189/374 (50%), Gaps = 29/374 (7%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKE 120
           +S L +C+ +  +R +HAQ++  G        +KL+    L      L  A ++F  ++E
Sbjct: 6   LSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQE 65

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            + + W+ M  G +  +D ++    +   I  G+  + YT PF++++C   K    G+ I
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H  VLK G D+D +V  +L+ MY +   ++DAR++FDQ   RD+V++             
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY------------- 172

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
              TA+I  YA  G I SA+++FD +  K+V+SW+AMI+ Y   G  K+AL+LF  M+ +
Sbjct: 173 ---TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 229

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T VS++ AC+ +  +E G R   S  DD     ++K    ++DL  + G ++ 
Sbjct: 230 NVRPDESTMVSVVSACAQSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  L E +S  KD   W  L+G    H N+    +     + R  ++P    +LS + A 
Sbjct: 289 ACGLFEGLSY-KDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPAC 346

Query: 421 A-------GRWQDV 427
           A       GRW  V
Sbjct: 347 AHLGAIEIGRWIHV 360


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/547 (37%), Positives = 313/547 (57%), Gaps = 58/547 (10%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALF-NGMKERD--SVSWSVMVGGFSKVADFINCFET 145
           L N  +  KL+ ++++ + + +A  +F +G ++ D     W  M  G+S+          
Sbjct: 106 LNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLL 165

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           + E +    QL ++     ++AC D  D+  GR +H  VLK+  D DQ V  AL+ +Y++
Sbjct: 166 YYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSE 225

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMI---------------------------------- 231
               D+A ++FD MP R++V+W  +I                                  
Sbjct: 226 DGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTI 285

Query: 232 ----------GANKFLLDVILGT----------AVIDMYAKCGSIDSAREIFDRMRQKNV 271
                     G+ K +  VI+ +          +++DMYAKCG++D  R +F+ M+ K++
Sbjct: 286 LPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDL 345

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            SW+ +I  Y  +G+  +A++ F  M+ S   P+ ITF++LL  CSH GL ++G RLF  
Sbjct: 346 TSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEM 405

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M  D+ + P V+HY C+VD+LGRAGR+ EAL+++++M  +    +WG+LL +CR+H NV 
Sbjct: 406 MKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVP 465

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE  AK L E +P N G+YV+LSN+YANAG W+ V  +R+ M +R + K  G +W++++
Sbjct: 466 LAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIK 525

Query: 452 NKIHQFSVGDSTH-PQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +KIH F  G S     S E  ++   L E +E  GY+PDT   LHDV EE++   +  HS
Sbjct: 526 SKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHS 585

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LA  F LI T  G  IRI KNLRVC DCHS++K +S +T RVI++RD NRFHHF+ G 
Sbjct: 586 ERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGV 645

Query: 571 CSCRDYW 577
           CSC+DYW
Sbjct: 646 CSCKDYW 652


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 316/545 (57%), Gaps = 58/545 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVS---WSVMVGGFSKVADFINCFETFR 147
           N  + +KL+ ++++ + L  A  +F+ + +   ++   W+ M  G+S+     +    + 
Sbjct: 173 NPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYV 232

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
           + +   ++  ++++   ++AC D KD+ +GR IH  ++K    +DQ V   L+ +Y +  
Sbjct: 233 DMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESG 292

Query: 208 VIDDARQLFDQMPTRDLVTWTV------------------------MIGANKFLLDVILG 243
           + DDAR++FD M  R++VTW                          MIG +   L  IL 
Sbjct: 293 LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 352

Query: 244 ------------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                          +++DMY KCG ++ +R +FD M  K++ S
Sbjct: 353 ACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS 412

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+ M+  Y  +G  ++ ++LF  M+ S V P+ ITFV+LL  CS TGL E GL LF  M 
Sbjct: 413 WNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMK 472

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            +F V P ++HY C+VD+LGRAG++ EA+K+IE+M  +    +WG+LL +CR+H NV + 
Sbjct: 473 TEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVG 532

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E+AAK L   +P NPG+YV++SN+YA+A  W +V KIR++M +R +KK  G +W++V++K
Sbjct: 533 EIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDK 592

Query: 454 IHQFSVGDSTHPQSEEIYRMLVT-LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
           I  F  G     ++ + Y+ + T L E +E +GY P+T+  LHDVDEE K   +  HSE+
Sbjct: 593 IQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSER 652

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LA  + LI T EG  IRI KNLRVC DCHS++K VS +TRRVI++RD  RFHHF  G CS
Sbjct: 653 LATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICS 712

Query: 573 CRDYW 577
           C+DYW
Sbjct: 713 CKDYW 717


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 297/501 (59%), Gaps = 45/501 (8%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH+ I   G  +NL + N L+  Y+    +  A  LF G+  +D +SW++++GG++ +
Sbjct: 215 RQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHL 274

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +      F+E +R G   +  T+  ++ AC     I +GR IH  + K          
Sbjct: 275 NLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDK---------- 324

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
                   + K + +A  L                            T++IDMY+KCG I
Sbjct: 325 --------RLKGVTNASSL---------------------------RTSLIDMYSKCGDI 349

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           ++A ++F+ M  K++ +W+AMI  +  HG+   A D+F  M  + + P+ ITFV LL AC
Sbjct: 350 EAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSAC 409

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH G+++ G  +F SM  ++ + P ++HY CM+DLLG +G   EA ++I +M++E D  +
Sbjct: 410 SHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVI 469

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W +LL AC++H NV+L E  A++L + +P NPG YVLLSN+YA AGRW +VA+IR L+  
Sbjct: 470 WCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLND 529

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + +KK+PG + IE+++ +H+F +GD  HP++ EIY ML  +   L+ AG++PDT+  L +
Sbjct: 530 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQE 589

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++EE K G L  HSEKLAIAFGLI+T   T + I+KNLRVC +CH   K +S I +R II
Sbjct: 590 MEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREII 649

Query: 557 VRDANRFHHFEGGACSCRDYW 577
            RD  RFHHF  G CSC DYW
Sbjct: 650 ARDRTRFHHFRDGVCSCNDYW 670



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 167/329 (50%), Gaps = 26/329 (7%)

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
           + L  A ++F  ++E + + W+ M  G +   D ++  + +   I  G+  +SYT PF++
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           ++C   K    G  IH  VLK G ++D +V  +L+ MY + + ++DA ++FD+   RD+V
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           ++                TA++  YA  G I+SAR +FD +  K+V+SW+AMI+ Y   G
Sbjct: 131 SY----------------TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETG 174

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
             K+AL+LF  M+ + V P+  T V+++ A + +G +E G R   S   D     ++K  
Sbjct: 175 NYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELG-RQVHSWIADHGFGSNLKIV 233

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
             ++D   + G ++ A  L   +S  KD   W  L+G    H N+    +     + R  
Sbjct: 234 NALIDFYSKCGEMETACGLFLGLSY-KDVISWNILIGG-YTHLNLYKEALLLFQEMLRSG 291

Query: 406 QNPGHYVLLSNVYANA-------GRWQDV 427
           ++P    +LS ++A A       GRW  V
Sbjct: 292 ESPNDVTMLSILHACAHLGAIDIGRWIHV 320


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/580 (35%), Positives = 322/580 (55%), Gaps = 58/580 (10%)

Query: 56  RSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           R  +   F S+L +C +     + + +HA ++  G   N+IV N L+ +YA    + +A 
Sbjct: 329 RGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAK 388

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F  M +RD V+W+ ++GG +   +     + F+     G+ ++  T+  V+ AC    
Sbjct: 389 KVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPN 448

Query: 173 DIV-MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV-- 229
           D++  G  IH  ++ +G   D++V  +L+ MYAKC  ++ +  +FD++ +++   W    
Sbjct: 449 DLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMM 508

Query: 230 --------MIGANKFLLDV----------------------------------------- 240
                   M  A KFLL++                                         
Sbjct: 509 AANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCD 568

Query: 241 ---ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
               + +A +DMY KCG ID    I  R   ++ +SW+ + +++  HG  +KA + F  M
Sbjct: 569 SNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEM 628

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           ++  V P+ +TFVSLL ACSH G+VEEGL  + SM  +F +   + H  C++DLLGR+GR
Sbjct: 629 INLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGR 688

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
             EA   I+ M V   + +W +LL AC+ H N++L   A ++LL+  P +   YVL SN+
Sbjct: 689 FAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNI 748

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
            A  G+W+DV KIR  M   ++KK P  +W++++NK+  F +GD +HPQ+ EIY  L  L
Sbjct: 749 CATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEEL 808

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
            + ++ AGYIPD ++ L D DEE K  NL++HSE+LA+A+GLI++PEG+ ++I KNLRVC
Sbjct: 809 KKMIKEAGYIPDISYALQDTDEEQKEHNLWNHSERLALAYGLISSPEGSTLKIFKNLRVC 868

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GDCHS  K  S I  R I++RD  RFH F GG CSC DYW
Sbjct: 869 GDCHSVYKFASGILGRKIVLRDPYRFHQFSGGQCSCTDYW 908



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 167/395 (42%), Gaps = 60/395 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVH  IV  G L+++ V   L+++Y  +    DA  +F  M  ++ VSW+ ++  +    
Sbjct: 51  QVHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYG 110

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
           +       +R     GM  +  T+  VI  C   ++ ++G  +   V+K GL+ +  V  
Sbjct: 111 EPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVAN 170

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------ 233
           +L+ M+     +++A  +F  M   D ++W  MI A                        
Sbjct: 171 SLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEI 230

Query: 234 NKFLLDVILG------------------------------TAVIDMYAKCGSIDSAREIF 263
           N   L  +L                                 +I MY+  G  + A  +F
Sbjct: 231 NSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVF 290

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             M +K++ISW++M+A Y   G    AL L   M   R   N +TF S L ACS      
Sbjct: 291 QGMVEKDMISWNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFAT 350

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           EG ++  ++     +  +V     +V L  ++G + EA K+ ++M  ++D   W AL+G 
Sbjct: 351 EG-KILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALIGG 408

Query: 384 CRIHKNVDLAEMAAKSL-LERQPQNPGHYVLLSNV 417
              H + +  + A K+  L R+   P +Y+ +SNV
Sbjct: 409 ---HADSEEPDEALKAFKLMREEGVPINYITISNV 440



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 140/318 (44%), Gaps = 55/318 (17%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           IS+ +S  N     QV   ++  G  TN+ VAN L+ ++    ++ +A  +F+GM E D+
Sbjct: 138 ISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDT 197

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SW+ M+  + +          F    R   +++S TL  ++  C    ++  GR IH +
Sbjct: 198 ISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSL 257

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------ 231
           VLK G + +      L+ MY+     +DA  +F  M  +D+++W  M+            
Sbjct: 258 VLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDA 317

Query: 232 ------------GANKFLL------------------------------DVILGTAVIDM 249
                       GAN                                  +VI+G A++ +
Sbjct: 318 LKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTL 377

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           YAK G +  A+++F  M +++ ++W+A+I  +    +  +AL  F +M    V  N IT 
Sbjct: 378 YAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITI 437

Query: 310 VSLLYAC-SHTGLVEEGL 326
            ++L AC +   L+E G+
Sbjct: 438 SNVLGACLAPNDLLEHGM 455



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 161/358 (44%), Gaps = 68/358 (18%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S  N+   R +H+ ++  G  +N+  +N L+ +Y+      DA  +F GM E+D +SW+ 
Sbjct: 244 SVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNS 303

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+  +++  + ++  +            +  T    + AC D +    G+++H +V+  G
Sbjct: 304 MMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVG 363

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------- 233
           L  +  V  ALV +YAK  ++ +A+++F  MP RD VTW  +IG                
Sbjct: 364 LHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFK 423

Query: 234 ---------NKFLLDVILG-------------------------------TAVIDMYAKC 253
                    N   +  +LG                                ++I MYAKC
Sbjct: 424 LMREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKC 483

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++S+  IFDR+  KN  +W+AM+AA  +HG  ++AL     M  + V  +  +F   L
Sbjct: 484 GDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECL 543

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVR------PDVKHYTCMVDLLGRAGRLDEALKLI 365
            A +   ++EEG +L        AV+      P V   T  +D+ G+ G +D+ L++I
Sbjct: 544 AAAAKLAILEEGQQLHG-----LAVKLGCDSNPFVASAT--MDMYGKCGEIDDVLRII 594


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/553 (36%), Positives = 321/553 (58%), Gaps = 55/553 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  ++  G   + +  N L+ +YA    L  A  +F+  K +DSV+W+ ++ G+++   
Sbjct: 344 VHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGY 403

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           +    E+F+  ++   + DS T   ++       DI  GR IH  V+K G + +  +  +
Sbjct: 404 YKEGLESFK-MMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNS 462

Query: 199 LVDMYAKCKVIDD-------------------------------ARQLFDQMPTRDLV-- 225
           L+D+YAKC  +DD                                 Q+ ++M T  L+  
Sbjct: 463 LLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPD 522

Query: 226 TWTVM---------------------IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
             TV+                     I  + F  +V +G A+I+MY+KCGS+++  ++F 
Sbjct: 523 EATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFK 582

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            M++K+V++W+A+I+A+G +G+GKKAL  F  M  S VLP+ + F++ ++ACSH+G+V+E
Sbjct: 583 YMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKE 642

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           GLR F  M  D+ + P ++HY C+VDLL R+G L +A + I SM ++ D  LWGALL AC
Sbjct: 643 GLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSAC 702

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           R   N ++A+  +K +LE    + G+YVL+SN+YA  G+W  V  +R+ M  + LKK PG
Sbjct: 703 RARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPG 762

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            +WIE++ +++ F  GD +  Q +++  +L  L   +   GY+ D  F LHDV+E+ K  
Sbjct: 763 SSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRD 822

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L  HSE+LAIAFGL+ T  G+ + +MKNLRVCGDCH+  K+++ I +R I+VRDANRFH
Sbjct: 823 MLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFH 882

Query: 565 HFEGGACSCRDYW 577
            F+ GACSC D+W
Sbjct: 883 RFKDGACSCGDHW 895



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 163/367 (44%), Gaps = 58/367 (15%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F S + SC  I  +     VH   +  G  ++L + N L+ +Y+    L +A  +F
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  RDSVSW+ ++ G+     + +  + + +F   GM  D +T+  V+ AC     + 
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVK 239

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---- 231
            G  +H ++ K G+  D  +   L+ MY K + + +AR++F +M  +D VTW  MI    
Sbjct: 240 EGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA 299

Query: 232 ------GANKFLLDVILG------------------------------------------ 243
                  + K  +D+I G                                          
Sbjct: 300 QLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVA 359

Query: 244 -TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
              +IDMYAKCG + +A+E+FD  + K+ ++W+++I  Y   G  K+ L+ F MM   R 
Sbjct: 360 CNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERK 419

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +TFV LL   S    + +G  +   +   F    ++     ++D+  + G +D+ L
Sbjct: 420 -PDSVTFVLLLSIFSQLADINQGRGIHCDVI-KFGFEAELIIGNSLLDVYAKCGEMDDLL 477

Query: 363 KLIESMS 369
           K+   MS
Sbjct: 478 KVFSYMS 484



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 183/422 (43%), Gaps = 63/422 (14%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P  +F RS      + +L S +N  Q+R VH+ I+  G   ++I + KL+  YA  K   
Sbjct: 16  PSQEFLRSS----LLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPI 71

Query: 110 DAHALFNGMKERDSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            + ++F  +   ++V  W+ ++   +    F      + E     +Q D++T P VI +C
Sbjct: 72  SSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSC 131

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
               D+ +G ++H+  ++ G + D ++  AL+DMY++   +D+AR +F++M  RD V+W 
Sbjct: 132 ARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWN 191

Query: 229 VMIG---ANKFLLD---------------------------------------------- 239
            +I    +N F  D                                              
Sbjct: 192 SLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKI 251

Query: 240 -----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                VI+G  ++ MY K   +  AR +F +M  K+ ++W+ MI  Y   G+ + ++ LF
Sbjct: 252 GIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+   V P+ ++  S + AC  +G ++ G +             D      ++D+  +
Sbjct: 312 MDMIDGFV-PDMLSITSTIRACGQSGDLQVG-KFVHKYLIGSGFECDTVACNILIDMYAK 369

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
            G L  A ++ ++    KD   W +L+ G  +     +  E      +ER+P +    +L
Sbjct: 370 CGDLLAAQEVFDTTKC-KDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLL 428

Query: 414 LS 415
           LS
Sbjct: 429 LS 430



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 22/228 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           + SLL+ R   Q +++H  I   G  +N+ + N L+ +Y+   +L +   +F  MKE+D 
Sbjct: 532 MCSLLAVRR--QGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDV 589

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHD 182
           V+W+ ++  F    +     + F++    G+  DS      I AC     +  G R    
Sbjct: 590 VTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDR 649

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA-------- 233
           +     L+      A +VD+ A+  ++  A +    MP + D   W  ++ A        
Sbjct: 650 MKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTN 709

Query: 234 -----NKFLL-----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                +K +L     D      V ++YA  G  D  + + + M+ K +
Sbjct: 710 IAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGL 757


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 308/604 (50%), Gaps = 85/604 (14%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           D   F     +CR I  +RQ+HA     G   +    N LL  YA    L  A  LF G+
Sbjct: 44  DASLFSHIFRACRAIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLFEGI 103

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFI---------------------------- 150
            +R+ +SW++++GG  K  D  +  E F +                              
Sbjct: 104 SKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFL 163

Query: 151 ---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
              R GM  D + L  V R C    D+V GR +H  V++SG+D D  V  +L  MY +C 
Sbjct: 164 AMRREGMHPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCG 223

Query: 208 VIDDARQLFDQMPT-----------------------------------RDLVTWTVMIG 232
            + +   +   +P+                                    D+VT+   I 
Sbjct: 224 CLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAIS 283

Query: 233 ANKFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
               L  +  G                   T+++ MY++CG +  +  ++D     ++  
Sbjct: 284 CCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFL 343

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
            SAMI+A G+HGQG KA++LF  M++    PN +TF++LLYACSH+GL +EGL  F  M 
Sbjct: 344 LSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMT 403

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             +  +P VKHY C+VDLLGR+G LDEA  LI SM V  D  +W  LL AC+  KN D+A
Sbjct: 404 KTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMA 463

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E  A+ ++E  P++   YVLLSN+ A + RW DV ++R +M  + ++K PG +W+E + +
Sbjct: 464 ERIAERVIESDPRDSAPYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQ 523

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +HQF  GD +HP+  EI   L  +  K+   GY PD     HD+++E K  +L  HSEKL
Sbjct: 524 VHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKL 583

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAF  +  PEG  IR+MKNLRVC DCH  IK +S +T R I+VRD +RFHHF  G CSC
Sbjct: 584 AIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSC 643

Query: 574 RDYW 577
            DYW
Sbjct: 644 GDYW 647


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/598 (36%), Positives = 323/598 (54%), Gaps = 55/598 (9%)

Query: 35  HEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIV 94
           H  N   PR    +    Q  ++ +   F ++L +C N+  ++ VHA ++  G   NLI+
Sbjct: 337 HVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKIVHAFVILLGLHHNLII 396

Query: 95  ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGM 154
            N L+ +Y    ++  A  +   M +RD V+W+ ++GG +   +     E F      G+
Sbjct: 397 GNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGV 456

Query: 155 QLDSYTLPFVIRACRDRKDIV-MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
            ++  T+  ++ A     D++  G  IH  ++ +G +++ FV ++L+ MYA+C  ++ + 
Sbjct: 457 PVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSN 516

Query: 214 QLFDQMPTRDLVTWTVMIGAN------------------------KFLLDV---ILGT-- 244
            +FD +  ++  TW  ++ AN                        +F   V   I+G   
Sbjct: 517 YIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLT 576

Query: 245 -------------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                    A +DMY KCG ID    I  + R ++  SW+ +I+
Sbjct: 577 LLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILIS 636

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           A   HG  ++A + F  ML   + P+ +TFVSLL ACSH GLV+EGL  FSSM   F V 
Sbjct: 637 ALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVP 696

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
             ++H  C++DLLGRAG+L EA   I  M V   + +W +LL AC+IH N++LA  AA  
Sbjct: 697 TGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADR 756

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           L E    +   YVL SNV A+  RW+DV  +R  M    +KK P  +W++++N++  F +
Sbjct: 757 LFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGM 816

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           GD  HPQ+ EIY  L  L + +  AGY+PDT++ L D DEE K  NL++HSE++A+AFGL
Sbjct: 817 GDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGL 876

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I + EG+ +RI KNLRVCGDCHS  K VS I  R II+RDA RFHHF  G CSC DYW
Sbjct: 877 INSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 168/394 (42%), Gaps = 61/394 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVHA ++  G   ++ V   LL+ Y     + +   +F  ++E + VSW+ ++ G++   
Sbjct: 80  QVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNG 139

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                   +R   R G+  +   +  VIR+C    D ++G  +   V+KSGLD    V  
Sbjct: 140 CVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVAN 199

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN----------KFLLDVILGTAVI 247
           +L+ M+  C  I++A  +FD M  RD ++W  +I A+          ++   +    A  
Sbjct: 200 SLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKT 259

Query: 248 D------MYAKCGSIDSAR-------EIFDRMRQKNVISWSAMIAAYGYHGQGK------ 288
           D      +   CGS  + R        +     + NV   +++++ Y   G+ +      
Sbjct: 260 DYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVF 319

Query: 289 -------------------------KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
                                    +AL+L   ML +R   N +TF + L AC +     
Sbjct: 320 HKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNL---- 375

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           E L++  +      +  ++     +V + G+ G +  A ++ + M  ++DE  W AL+G 
Sbjct: 376 ETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP-DRDEVTWNALIGG 434

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
              +K  + A + A +LL R+   P +Y+ + N+
Sbjct: 435 HADNKEPN-AAIEAFNLL-REEGVPVNYITIVNL 466



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 155/363 (42%), Gaps = 58/363 (15%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y+   ++  A  +F+ M ER+  SW+ ++ GF +V  +    + F   +  G++  SY 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 161 LPFVIRACRDRKDIVMGRL-IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
              ++ AC     +  G   +H  V+K GL  D FV  +L+  Y     + +   +F ++
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 220 PTRDLVTWT-VMIG----------------------------------ANKFLLDVILG- 243
              ++V+WT +M+G                                  +   L+D +LG 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 244 ------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                              ++I M+  C SI+ A  +FD M++++ ISW+++I A  ++G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
             +K+L+ F  M  +    + IT  +LL  C     +  G R    M     +  +V   
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWG-RGLHGMVVKSGLESNVCVC 299

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-EMAAKSLLERQ 404
             ++ +  +AG+ ++A  +   M  E+D   W +++ +   + N   A E+  + L  R+
Sbjct: 300 NSLLSMYSQAGKSEDAEFVFHKMR-ERDLISWNSMMASHVDNGNYPRALELLIEMLQTRK 358

Query: 405 PQN 407
             N
Sbjct: 359 ATN 361



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 144/340 (42%), Gaps = 36/340 (10%)

Query: 53  QFTRSVDPKFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           ++T +      IS+LL    S +N+   R +H  +V  G  +N+ V N LL +Y+     
Sbjct: 253 RYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKS 312

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            DA  +F+ M+ERD +SW+ M+       ++    E   E ++     +  T    + AC
Sbjct: 313 EDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSAC 372

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
            + + +   +++H  V+  GL  +  +  ALV MY K   +  A+++   MP RD VTW 
Sbjct: 373 YNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWN 429

Query: 229 VMIGAN-------------KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-------- 267
            +IG +               L +  +    I +     +  S  ++ D           
Sbjct: 430 ALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVV 489

Query: 268 ---QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
              +      S++I  Y   G    +  +F ++ +     N  T+ ++L A +H G  EE
Sbjct: 490 AGFELETFVQSSLITMYAQCGDLNTSNYIFDVLAN----KNSSTWNAILSANAHYGPGEE 545

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            L+L   M +D  +  D   ++    ++G    LDE  +L
Sbjct: 546 ALKLIIKMRND-GIHLDQFSFSVAHAIIGNLTLLDEGQQL 584


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/601 (34%), Positives = 319/601 (53%), Gaps = 86/601 (14%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FI S  + +++   +Q+H  +V  G  ++  + N L+ +Y+       A A++  M++++
Sbjct: 50  FIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKN 109

Query: 123 SVSWSVMVGGFSKVADFINC------------------------FE-------TFREFIR 151
            +S ++++ G+ +  D +N                         FE        FRE   
Sbjct: 110 YMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHG 169

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
            G   D YTL  V       + + +G+ IH   +K GL++D  V ++L  MY +   + D
Sbjct: 170 LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229

Query: 212 ARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGTA-- 245
              +   MP R+LV W  +I                          NK     +L +   
Sbjct: 230 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 289

Query: 246 ----------------------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                       +I MY+KCG +  A + F     ++ + WS+M
Sbjct: 290 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 349

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           I+AYG+HGQG +A++LF  M     +  N + F++LLYACSH+GL ++GL LF  M + +
Sbjct: 350 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 409

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
             +P +KHYTC+VDLLGRAG LD+A  +I SM ++ D  +W  LL AC IHKN ++A+  
Sbjct: 410 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 469

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
            K +L+  P +   YVLL+NV+A+A RW+DV+++R  M  + +KK  G +W E + ++HQ
Sbjct: 470 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 529

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           F +GD +  +S+EIY  L  L+ +++L GY PDT   LHD+DEE K  +L  HSEKLA+A
Sbjct: 530 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 589

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           F L+  PEG  IRI+KNLRVC DCH   K++S I  R I +RD +RFHHF  G CSC DY
Sbjct: 590 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 649

Query: 577 W 577
           W
Sbjct: 650 W 650



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 19/241 (7%)

Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
           N  E F+ F        S   PF I++C  R+ +  G+ +H +++ SG   D+F+C  L+
Sbjct: 28  NLREAFQRFRLNIFTNTSLFTPF-IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLM 86

Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
            MY+K      A  ++ +M  ++ ++  ++I                  Y + G + +AR
Sbjct: 87  SMYSKLGDFPSAVAVYGRMRKKNYMSSNILING----------------YVRAGDLVNAR 130

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++FD M  + + +W+AMIA        ++ L LF  M      P+  T  S+    +   
Sbjct: 131 KVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLR 190

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            V  G ++       + +  D+   + +  +  R G+L +   +I SM V ++   W  L
Sbjct: 191 SVSIGQQIHGYTI-KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPV-RNLVAWNTL 248

Query: 381 L 381
           +
Sbjct: 249 I 249


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/545 (37%), Positives = 316/545 (57%), Gaps = 58/545 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVS---WSVMVGGFSKVADFINCFETFR 147
           N  + +KL+ ++++ + L  A  +F+ + +   ++   W+ M  G+S+     +    + 
Sbjct: 166 NPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYV 225

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
           + +   ++  ++++   ++AC D KD+ +GR IH  ++K    +DQ V   L+ +Y +  
Sbjct: 226 DMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESG 285

Query: 208 VIDDARQLFDQMPTRDLVTWTV------------------------MIGANKFLLDVILG 243
           + DDAR++FD M  R++VTW                          MIG +   L  IL 
Sbjct: 286 LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 345

Query: 244 ------------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                          +++DMY KCG ++ +R +FD M  K++ S
Sbjct: 346 ACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS 405

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+ M+  Y  +G  ++ ++LF  M+ S V P+ ITFV+LL  CS TGL E GL LF  M 
Sbjct: 406 WNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMK 465

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            +F V P ++HY C+VD+LGRAG++ EA+K+IE+M  +    +WG+LL +CR+H NV + 
Sbjct: 466 TEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVG 525

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E+AAK L   +P NPG+YV++SN+YA+A  W +V KIR++M +R +KK  G +W++V++K
Sbjct: 526 EIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDK 585

Query: 454 IHQFSVGDSTHPQSEEIYRMLVT-LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
           I  F  G     ++ + Y+ + T L E +E +GY P+T+  LHDVDEE K   +  HSE+
Sbjct: 586 IQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSER 645

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LA  + LI T EG  IRI KNLRVC DCHS++K VS +TRRVI++RD  RFHHF  G CS
Sbjct: 646 LATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICS 705

Query: 573 CRDYW 577
           C+DYW
Sbjct: 706 CKDYW 710


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 326/600 (54%), Gaps = 92/600 (15%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLL-YIYALHKALTDAHA--LFNGMKERDSVSW 126
           C ++ Q ++VHAQI       +  V  KLL  + AL      ++   LF+ +   +  +W
Sbjct: 18  CSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAW 77

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH-DIVL 185
           + ++  ++           +    +  +   S+T   +  AC   +   +G  +H   +L
Sbjct: 78  TALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLL 137

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----------------------- 222
             G   D +V  A++DMY KC  +  AR +FD+MP R                       
Sbjct: 138 LGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARD 197

Query: 223 --------DLVTWTVMI-----------------------------------------GA 233
                   D+VTWT M+                                         GA
Sbjct: 198 LFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGA 257

Query: 234 NKFLL---------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           +K+                 +V++G+A+IDMY+KCG+++ A ++F  MR++NV S+S+MI
Sbjct: 258 SKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMI 317

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
             +  HG+ + A+ LF  ML + V PN +TFV +L ACSH GLV++G +LF+SM   + V
Sbjct: 318 VGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGV 377

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P  + Y CM DLL RAG L++AL+L+E+M +E D  +WGALLGA  +H N D+AE+A+K
Sbjct: 378 APTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASK 437

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK-IHQF 457
            L E +P N G+Y+LLSN YA+AGRW DV+K+R L+  + LKK PGW+W+E +N  IH+F
Sbjct: 438 RLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKF 497

Query: 458 SVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
             GD +HP+  EI + L  L E+L+  GY P+ +   + +++  K   L +HSEKLA+AF
Sbjct: 498 VAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAF 557

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GL++T  G+ I+IMKNLR+C DCH  +   S +T R I+VRD  RFHHF  GACSC ++W
Sbjct: 558 GLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 295/542 (54%), Gaps = 55/542 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N + +N L+  Y     L  A  +F+ M +R   +W+ M+ G  +          FRE  
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G   D YTL  V       + + +G+ IH   +K GL++D  V ++L  MY +   + 
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 211 DARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGTA- 245
           D   +   MP R+LV W  +I                          NK     +L +  
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 246 -----------------------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                        +I MY+KCG +  A + F     ++ + WS+
Sbjct: 204 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 263

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           MI+AYG+HGQG +A+ LF  M     +  N + F++LLYACSH+GL ++GL LF  M + 
Sbjct: 264 MISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           +  +P +KHYTC+VDLLGRAG LD+A  +I+SM ++ D  +W  LL AC IHKN ++A+ 
Sbjct: 324 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQK 383

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
             K +LE  P +   YVLL+NV+A+A RW+DV+++R  M  + +KK  G +W E + ++H
Sbjct: 384 VFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 443

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           QF +GD +  +S+EIY  L  L+ +++L GY PDT   LHD+DEE K  +L  HSEKLA+
Sbjct: 444 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 503

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AF L+  PEG  IRI+KNLRVC DCH   K++S I  R I +RD +RFHHF  G CSC D
Sbjct: 504 AFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGD 563

Query: 576 YW 577
           YW
Sbjct: 564 YW 565



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           + MY+K G + SA  +++RMR+KN +S + +I  Y   G    A  +F  M      P+R
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEM------PDR 54

Query: 307 --ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
              T+ +++         EEGL LF  M       PD   YT      G AG
Sbjct: 55  KLTTWNAMIAGLIQFEYNEEGLSLFREM-HGLGFSPD--EYTLGSVFSGSAG 103


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 316/585 (54%), Gaps = 84/585 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----------------- 119
           +Q+H Q++  G  + L+V + LL +Y+    ++DA  +F G+                  
Sbjct: 156 KQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLAC 215

Query: 120 -------------ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
                        E+DSVSWS M+ G ++        E FRE    G+++D Y    V+ 
Sbjct: 216 GMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLP 275

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           AC     I  GR IH  ++++ L    +V +AL+DMY KCK +  A+ +FD+M  +++V+
Sbjct: 276 ACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 335

Query: 227 WTVMI----------GANKFLLDV----------ILGTAV-------------------- 246
           WT M+           A K  LD+           LG A+                    
Sbjct: 336 WTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAI 395

Query: 247 --------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                         + +Y KCG ID +  +F+ M  ++ +SW+AM++AY   G+  +A+ 
Sbjct: 396 TAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQ 455

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  M+   + P+ +T   ++ ACS  GLVE+G R F  M +++ + P   HY+CM+DL 
Sbjct: 456 LFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLF 515

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
            R+GR++EA+  I  M    D   W  LL ACR   N+++ + AA+SL+E  P +P  Y 
Sbjct: 516 SRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 575

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLS++YA+ G+W  VA++R  M  + ++K PG +WI+ + K+H FS  D + P S++IY 
Sbjct: 576 LLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYA 635

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  L +K+   GY PDT+F  HDV+E VK+  L  HSE+LAIAFGLI  P G  IR+ K
Sbjct: 636 KLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGK 695

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH+  KH+S++T R I+VRDA RFH F+ G CSC D+W
Sbjct: 696 NLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 169/390 (43%), Gaps = 68/390 (17%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK---VADFINCFETF- 146
           NL   N LL  Y+    L++    F  + +RD V+W+V++ G+S    V   +  + T  
Sbjct: 68  NLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 127

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           ++F      L   TL  +++       + +G+ IH  V+K G +    V + L+DMY+K 
Sbjct: 128 KDF---SSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV 184

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
             I DA+++F  +  R+ V +  ++G    LL              CG I+ A ++F R 
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGG---LL-------------ACGMIEDALQLF-RG 227

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
            +K+ +SWSAMI     +G  K+A++ F  M    +  ++  F S+L AC   G + +G 
Sbjct: 228 MEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGR 287

Query: 327 RLF---------------SSMWD---------------DFAVRPDVKHYTCMVDLLGRAG 356
           ++                S++ D               D   + +V  +T MV   G+ G
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 347

Query: 357 RLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HY 411
           R  EA+K+   M    ++ D    G  + AC      +++ +   S    +    G  HY
Sbjct: 348 RAGEAVKIFLDMQRSGIDPDHYTLGQAISAC-----ANISSLEEGSQFHGKAITAGLIHY 402

Query: 412 VLLSN----VYANAGRWQDVAKIRDLMTRR 437
           + +SN    +Y   G   D  ++ + M  R
Sbjct: 403 ITVSNSLVTLYGKCGDIDDSTRLFNEMNVR 432



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 97/237 (40%), Gaps = 53/237 (22%)

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
           ++IH  ++++    + F+   +V  YA  +    AR++FD +P  +L +W      N  L
Sbjct: 23  KMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSW------NNLL 76

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
           L           Y+K G +      F+++  ++ ++W+ +I  Y   G    A+  +  M
Sbjct: 77  L----------AYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 126

Query: 298 L---SSRVLPNRITFVSLLYACSHTGLVEEGLRL--------FSS----------MWDDF 336
           +   SS +   R+T +++L   S  G V  G ++        F S          M+   
Sbjct: 127 MKDFSSNL--TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV 184

Query: 337 AVRPDVKH------------YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
               D K             Y  ++  L   G +++AL+L   M  EKD   W A++
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM--EKDSVSWSAMI 239


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/546 (38%), Positives = 317/546 (58%), Gaps = 71/546 (13%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    +L  Y     +T+A ALF+ M +R+ VSW+ M+ G+++  + +N      E +
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGE-VNLARKLFEVM 231

Query: 151 RCGMQLDSYTLPFV--IRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
               ++ S+T   V  I+A    D  ++      H +            C A++  + + 
Sbjct: 232 PERNEV-SWTAMLVGYIQAGHVEDAAELFNAMPEHPVA----------ACNAMMVGFGQR 280

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLL------------------------- 238
            ++D A+ +F++M  RD  TW+ MI A   N+FL+                         
Sbjct: 281 GMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISIL 340

Query: 239 --------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                     DV   +A+I MY KCG++D A+ +F     K+++
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
            W++MI  Y  HG G++AL +F  M  + + P+ IT++  L ACS+TG V+EG  +F+SM
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
             + ++RP  +HY+CMVDLLGR+G ++EA  LI++M VE D  +WGAL+GACR+H+N ++
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE+AAK LLE +P N G YVLLS++Y + GRW+D +K+R  ++ R L K PG +WIE + 
Sbjct: 521 AEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDK 580

Query: 453 KIHQFSVGDS-THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           ++H F+ GD   HP+   I R+L  L   L  +GY  D +F LHD+DEE K  +L  HSE
Sbjct: 581 RVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSE 640

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           + A+A+GL+  PEG  IR+MKNLRVCGDCHS IK ++ IT R I++RDANRFHHF+ G C
Sbjct: 641 RQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFC 700

Query: 572 SCRDYW 577
           SCRDYW
Sbjct: 701 SCRDYW 706



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 66/305 (21%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK-----------------VAD 138
           N LL  Y  ++    A  LF  M  RD  S++ ++ G S                     
Sbjct: 52  NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPS 111

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
            ++     R ++R G+  D+  L    +   +R  +      + ++L   LD  +     
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRL---FQQMPERNHVS-----YTVLLGGLLDAGR----- 158

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
                     +++AR+LFD+MP RD+V WT M+                  Y + G I  
Sbjct: 159 ----------VNEARRLFDEMPDRDVVAWTAMLSG----------------YCQAGRITE 192

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR +FD M ++NV+SW+AMI+ Y  +G+   A  LF +M       N +++ ++L     
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQ 248

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G VE+   LF++M +       V     M+   G+ G +D A  + E M  E+D+G W 
Sbjct: 249 AGHVEDAAELFNAMPEH-----PVAACNAMMVGFGQRGMVDAAKTVFEKMR-ERDDGTWS 302

Query: 379 ALLGA 383
           A++ A
Sbjct: 303 AMIKA 307



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 150/323 (46%), Gaps = 47/323 (14%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETF- 146
           +++    LL  Y  H  L DA  LF  M ER+ VS++V++GG     +V +    F+   
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170

Query: 147 -REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            R+ +     L  Y        C+  + I   R + D + K  +        A++  YA+
Sbjct: 171 DRDVVAWTAMLSGY--------CQAGR-ITEARALFDEMPKRNV----VSWTAMISGYAQ 217

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLL----DVILGTAVIDMY 250
              ++ AR+LF+ MP R+ V+WT M+            A  F       V    A++  +
Sbjct: 218 NGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGF 277

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            + G +D+A+ +F++MR+++  +WSAMI AY  +    +AL  F  ML   V PN  + +
Sbjct: 278 GQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVI 337

Query: 311 SLLYACSHTGLVEEGLRLFSSM------WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           S+L  C+   +++ G  + ++M       D FAV       + ++ +  + G LD+A ++
Sbjct: 338 SILTVCAALAVLDYGREVHAAMLRCSFDMDVFAV-------SALITMYIKCGNLDKAKRV 390

Query: 365 IESMSVEKDEGLWGALLGACRIH 387
             +    KD  +W +++     H
Sbjct: 391 FHTFE-PKDIVMWNSMITGYAQH 412



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 29/238 (12%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           AL+  Y + ++ D A  LF +MP+RDL ++  +I         +      D  A   SI 
Sbjct: 53  ALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTL-----PDAAAALASIP 107

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
                       +V+S+++++  Y  HG    A+ LF  M       N +++  LL    
Sbjct: 108 FP---------PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLL 154

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V E  RLF  M D      DV  +T M+    +AGR+ EA  L + M  +++   W
Sbjct: 155 DAGRVNEARRLFDEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVVSW 208

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            A++     +  V+L    A+ L E  P+ N   +  +   Y  AG  +D A++ + M
Sbjct: 209 TAMISGYAQNGEVNL----ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 46/227 (20%)

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A I   A+ G+I+ AR  F+ M  +   S++A++A Y  +     AL LF  M S  + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 304 -----------------------------PNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
                                        P+ ++F SLL      GL+ + +RLF  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 335 DFAVRPDVKH--YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVD 391
                P+  H  YT ++  L  AGR++EA +L + M  ++D   W A+L G C+  +  +
Sbjct: 139 -----PERNHVSYTVLLGGLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGRITE 192

Query: 392 LAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
                A++L +  P+ N   +  + + YA  G      K+ ++M  R
Sbjct: 193 -----ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER 234



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 56  RSVDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           R V P +   IS L  C  +  +   R+VHA ++      ++   + L+ +Y     L  
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+  + +D V W+ M+ G+++          F +    GM  D  T    + AC  
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 171 RKDIVMGRLI-HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
              +  GR I + + + S +       + +VD+  +  ++++A  L   MP   D V W 
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 229 VMIGA 233
            ++GA
Sbjct: 507 ALMGA 511


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 310/555 (55%), Gaps = 54/555 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            + +HA  V     T   V   LL +YA    + DA   F  +   D + WS+M+  +++ 
Sbjct: 652  KGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQC 711

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  FE F   +R  +  + ++L  V++AC +   + +G+ IH+  +K G + + FV 
Sbjct: 712  NQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVG 771

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIGANK-------------------- 235
             AL+D+YAKC  ++ + ++F  +   + V+W T+++G +K                    
Sbjct: 772  NALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVP 831

Query: 236  ---------------------------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                                             F  D I+  ++ID YAKCG I  AREI
Sbjct: 832  STQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREI 891

Query: 263  FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
            F+ +++ +++SW+A+I+ Y  HGQ   A +LF MM  + +  N ITFV+LL  C  TGLV
Sbjct: 892  FETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLV 951

Query: 323  EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
             +GL LF SM  D  + P ++HYTC+V LLGRAGRL++AL  I  +       +W ALL 
Sbjct: 952  SQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLS 1011

Query: 383  ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            +C +HKNV+L   +A+ +LE +PQ+   YVLLSN+Y+ AG    VA  R  M    ++K 
Sbjct: 1012 SCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKE 1071

Query: 443  PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            PG +W+E++ ++H FSVG   HP    I  ML  L+ K    GY+PDT+  LHD++EE K
Sbjct: 1072 PGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQK 1131

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
            V  L+ HSE+LA+A+GL+ TP G  IRIMKNLR C DCH+  K +S I ++ IIVRD NR
Sbjct: 1132 VRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINR 1191

Query: 563  FHHFEGGACSCRDYW 577
            FHHFE G CSC DYW
Sbjct: 1192 FHHFEEGTCSCGDYW 1206



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 170/370 (45%), Gaps = 56/370 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VHA     G   N  V + L+  Y++   ++DA  +F+G+  +D+V+W+ MV  +S+   
Sbjct: 553 VHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDC 612

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
             N  + F +      +L+ + L  V+RA      +V+G+ IH   +K+  D ++ V  A
Sbjct: 613 PENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGA 672

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------------- 232
           L+DMYAKC  I+DAR  F+ +   D++ W++MI                           
Sbjct: 673 LLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPN 732

Query: 233 -----------ANKFLLD-----------------VILGTAVIDMYAKCGSIDSAREIFD 264
                      AN  LLD                 + +G A+ID+YAKC  ++S+ EIF 
Sbjct: 733 EFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFS 792

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            +R  N +SW+ +I  Y   G G+ AL +F  M ++ V   ++T+ S+L AC+ T  +  
Sbjct: 793 SLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINH 852

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
            +     + +      D      ++D   + G + +A ++ E++  E D   W A++   
Sbjct: 853 -VGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLK-ECDLVSWNAIISGY 910

Query: 385 RIHKNVDLAE 394
            +H    +A+
Sbjct: 911 AVHGQAAMAQ 920



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 167/367 (45%), Gaps = 70/367 (19%)

Query: 77  RQVHAQIVAGGTLT--NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VH  +V  G L   +L  AN LL +Y        AH +F+G+ ER+ VS+  +V G +
Sbjct: 448 RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHA 507

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              +F      F+     G +++ + L  V++       + +   +H    K G D + F
Sbjct: 508 LRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAF 567

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
           V +AL+D Y+ C V+ DAR++FD +  +D V WT M+                       
Sbjct: 568 VGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAV 627

Query: 234 ---NKFLL-----------DVILGT-------------------AVIDMYAKCGSIDSAR 260
              N F L            V+LG                    A++DMYAKCG+I+ AR
Sbjct: 628 SKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDAR 687

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             F+ +   +VI WS MI+ Y    Q ++A +LF  M+ S V PN  +  S+L AC++  
Sbjct: 688 LAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMP 747

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYT------CMVDLLGRAGRLDEALKLIESMSVEKDE 374
           L++ G ++      + A++  + H +       ++DL  +   ++ +L++  S+  + +E
Sbjct: 748 LLDLGKQI-----HNHAIK--IGHESELFVGNALIDLYAKCSDMESSLEIFSSLR-DVNE 799

Query: 375 GLWGALL 381
             W  ++
Sbjct: 800 VSWNTII 806



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 66/286 (23%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG--LDIDQFVCAALVDMYAKCKVIDDAR 213
           +DSY    +++ C  R D   GR +H  V++SG    +D F    L++MY K      A 
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 214 QLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL------- 242
           ++FD +P R++V++  ++                          N+F+L  +L       
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 243 -----------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                  G+A+ID Y+ CG +  AR +FD +  K+ ++W+AM++
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 280 AYGYHGQGKKALDLFPMM--LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS--SMWDD 335
            Y  +   +  L +F  M    S++ P  +T V     C  + ++ +G+   S  +++D 
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
                +   Y  ++D+  + G +++A +L   M    D  LW  ++
Sbjct: 666 -----ERHVYGALLDMYAKCGNIEDA-RLAFEMVTNDDVILWSLMI 705


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/538 (39%), Positives = 299/538 (55%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   LL +YA    + DA   F  +   D +  S M+  +++       FE F   +R  
Sbjct: 300 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 359

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           +  + Y+L  V++AC +   +  G+ IH+  +K G + D FV  AL+D YAKC  +D + 
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419

Query: 214 QLFDQMPTRDLVTW-TVMIGANK------------------------------------- 235
           ++F  +   + V+W T+++G ++                                     
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479

Query: 236 ----------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                           F  D ++G ++ID YAKCG I  A ++F  + ++++ISW+A+I+
Sbjct: 480 SIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIIS 539

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y  HGQ   AL+LF  M  S V  N ITFV+LL  CS TGLV  GL LF SM  D  ++
Sbjct: 540 GYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIK 599

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HYTC+V LLGRAGRL++AL+ I  +       +W ALL +C IHKNV L   +A+ 
Sbjct: 600 PSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEK 659

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           +LE +PQ+   YVLLSN+YA AG    VA +R  M    ++K+PG +W+E++ +IH FSV
Sbjct: 660 ILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 719

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           G   HP    I  ML  L+ K    GYIPD N  LHDVD+E K   L+ HSE+LA+A+GL
Sbjct: 720 GSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGL 779

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + TP G  IRI+KNLR C DCH+    +S I +R IIVRD NRFHHFE G CSC DYW
Sbjct: 780 VMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 177/387 (45%), Gaps = 57/387 (14%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N  V + L+  Y+L   ++DA  +FNG+  +D+V W+ MV  +S+     N F  F +  
Sbjct: 196 NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMR 255

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G + + + L  V++A      +V+G+ IH   +K+  D +  V  AL+DMYAKC  I 
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIK 315

Query: 211 DARQLFDQMPTRDLVTWTVMIG------------------------ANKFLLDVIL---- 242
           DAR  F+ +P  D++  + MI                          N++ L  +L    
Sbjct: 316 DARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACT 375

Query: 243 --------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                     G A++D YAKC  +DS+ +IF  +R  N +SW+ 
Sbjct: 376 NMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNT 435

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++  +   G G++AL +F  M ++++   ++T+ S+L AC+ T  +    ++  S+ +  
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSI-EKS 494

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAEM 395
               D      ++D   + G + +ALK+ + + +E+D   W A++    +H +  D  E+
Sbjct: 495 TFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALHGQAADALEL 553

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAG 422
             +        N   +V L +V ++ G
Sbjct: 554 FDRMNKSNVESNDITFVALLSVCSSTG 580



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 153/361 (42%), Gaps = 58/361 (16%)

Query: 77  RQVHAQIVAGGTLT--NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VH  +V  G +   +L  AN LL +Y     L  A  LF+ M ER+ VS+  +V   +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +  DF      FR     G +++ + L  +++         +   +H    K G D + F
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF 198

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
           V + L+D Y+ C ++ DA  +F+ +  +D V WT M+                       
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSG 258

Query: 234 ---NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAR 260
              N F L  +L                              G A++DMYAKCG I  AR
Sbjct: 259 CKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDAR 318

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             F+ +   +VI  S MI+ Y    Q ++A +LF  ++ S VLPN  +  S+L AC++  
Sbjct: 319 LAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMV 378

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            ++ G ++ +          D+     ++D   +   +D +LK+  S+  + +E  W  +
Sbjct: 379 QLDFGKQIHNHAI-KIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR-DANEVSWNTI 436

Query: 381 L 381
           +
Sbjct: 437 V 437



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 90/216 (41%), Gaps = 56/216 (25%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDAR 213
           +DS+     ++ C  R D   GR +H  V++ G    +D F    L++MY K   +  AR
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 214 QLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL------- 242
           +LFD+MP R++V++  ++ A                        N+F+L  +L       
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 243 -----------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                  G+ +ID Y+ C  +  A  +F+ + +K+ + W+AM++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
            Y  +   + A  +F  M  S   PN     S+L A
Sbjct: 237 CYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKA 272


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/593 (34%), Positives = 326/593 (54%), Gaps = 86/593 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R + + ++VH  I   G +  +++ N++L +YA   +L DA  +F+ M ERD  SW+VMV
Sbjct: 101 RALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMV 160

Query: 131 GGFSKVA---DFINCFETFRE--------FIRCGMQLDSYTLPFVIRACRDR-------- 171
            G+++V    +  N F+   E         +   ++ D      V+ +   R        
Sbjct: 161 NGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNI 220

Query: 172 -------------KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
                        K I  G+ IH  ++++GLD D+ + ++L+DMY KC  ID+AR +FD+
Sbjct: 221 FTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDK 280

Query: 219 MPTRDLVTWTVMIG------------------------ANKFLLDVILG----------- 243
           +  +D+V+WT MI                          N++    +L            
Sbjct: 281 IIDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELG 340

Query: 244 -------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                              +++IDMY KCG+I+SAR + D   + +++S +++I  Y  +
Sbjct: 341 RQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQN 400

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G+  +AL  F ++L S   P+ +TFV++L AC+H GLVE+GL  F S+ +   +     H
Sbjct: 401 GKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDH 460

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           YTC+VDLL R+GR ++   ++  M ++  + LW ++LG C  + N+DLAE AA+ L + +
Sbjct: 461 YTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIE 520

Query: 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTH 464
           P+NP  YV ++N+YA AG+W++  K+R  M    + K PG +W E++ K H F   D++H
Sbjct: 521 PENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSH 580

Query: 465 PQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPE 524
           P   +I   L  L +K++  GY+P T+  LHDV++E K  NL  HSEKLA+AF +++T E
Sbjct: 581 PMYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEE 640

Query: 525 GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GT I++ KNLR C DCHS IK +S IT+R I +RD+ RFH FE G CSCRDYW
Sbjct: 641 GTAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 109/219 (49%), Gaps = 19/219 (8%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +I+ C   + +  G+ +H+ +  SG      +   ++ MYAKC  + DAR++FD+MP RD
Sbjct: 93  LIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERD 152

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           + +W VM+                  YA+ G ++ AR +FD M +++  SW+AM+  Y  
Sbjct: 153 VCSWNVMVNG----------------YAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVK 196

Query: 284 HGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
             Q ++AL L+ +M       PN  T  S + A +    +  G  +   +     +  D 
Sbjct: 197 KDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRA-GLDSDE 255

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             ++ ++D+ G+ G +DEA  + + + ++KD   W +++
Sbjct: 256 VLWSSLMDMYGKCGCIDEARNIFDKI-IDKDVVSWTSMI 293


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 301/557 (54%), Gaps = 56/557 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA  V  G + ++ V      +Y   +   DA  LF+ + ER+  +W+  +      
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 187

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E F EF R     +S T    + AC D   + +G  +H +VL+SG D D  VC
Sbjct: 188 GRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVC 247

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
             L+D Y KCK I  +  +F +M T++ V+W  ++ A                       
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 307

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            + F++  +L                              G+A++DMY KCG I+ + + 
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 367

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTG 320
           FD M +KN+++ +++I  Y + GQ   AL LF  M        PN +TFVSLL ACS  G
Sbjct: 368 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE G+++F SM   + + P  +HY+C+VD+LGRAG ++ A + I+ M ++    +WGAL
Sbjct: 428 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
             ACR+H    L  +AA++L +  P++ G++VLLSN +A AGRW +   +R+ +    +K
Sbjct: 488 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 547

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++WI V+N++H F   D +H  ++EI   L  L  ++E AGY PD    L+D++EE
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 607

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   +  HSEKLA+AFGL++ P    IRI KNLR+CGDCHSF K VS   +R IIVRD 
Sbjct: 608 EKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 667

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFH F+ G CSC+DYW
Sbjct: 668 NRFHRFKDGICSCKDYW 684



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 176/422 (41%), Gaps = 72/422 (17%)

Query: 77  RQVHAQIVAG-GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R VHA+IV    +     +AN L+ +Y+       A  +      R+ VSW+ ++ G ++
Sbjct: 26  RVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQ 85

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
              F      F E  R G+  + +T P   +A    +  V G+ IH + +K G  +D FV
Sbjct: 86  NGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFV 145

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVILGTAVIDM 249
             +  DMY K ++ DDAR+LFD++P R+L TW   I      G  +  ++  +    ID 
Sbjct: 146 GCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG 205

Query: 250 YAK----CGSIDSA-----------------REIFD-----------------RMRQKNV 271
           +      C  +++                  R  FD                 ++R   +
Sbjct: 206 HPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEI 265

Query: 272 I----------SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           I          SW +++AAY  + + +KA  L+       V  +     S+L AC+    
Sbjct: 266 IFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAG 325

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           +E G  + +      AV+  V+      + +VD+ G+ G ++++ +  + M  EK+    
Sbjct: 326 LELGRSIHAH-----AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTR 379

Query: 378 GALLGACRIHKNVDLA-----EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
            +L+G       VD+A     EMA +        N   +V L +  + AG  ++  KI D
Sbjct: 380 NSLIGGYAHQGQVDMALALFEEMAPRGC--GPTPNYMTFVSLLSACSRAGAVENGMKIFD 437

Query: 433 LM 434
            M
Sbjct: 438 SM 439


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/546 (38%), Positives = 316/546 (57%), Gaps = 71/546 (13%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    +L  Y     +T+A ALF+ M +R+ VSW+ M+ G+++  + +N      E +
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGE-VNLARKLFEVM 231

Query: 151 RCGMQLDSYTLPFV--IRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
               ++ S+T   V  I+A    D  ++      H +            C A++  + + 
Sbjct: 232 PERNEV-SWTAMLVGYIQAGHVEDAAELFNAMPEHPVA----------ACNAMMVGFGQR 280

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLL------------------------- 238
            ++D A+ +F++M  RD  TW+ MI A   N+FL+                         
Sbjct: 281 GMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISIL 340

Query: 239 --------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                     DV   +A+I MY KCG++D A+ +F     K+++
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
            W++MI  Y  HG G++AL +F  M  + + P+ IT++  L ACS+TG V+EG  +F+SM
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
             + ++RP  +HY+CMVDLLGR+G ++EA  LI++M VE D  +WGAL+GACR+H+N ++
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE AAK LLE +P N G YVLLS++Y + GRW+D +K+R  ++ R L K PG +WIE + 
Sbjct: 521 AEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDK 580

Query: 453 KIHQFSVGDS-THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           ++H F+ GD   HP+   I R+L  L   L  +GY  D +F LHD+DEE K  +L  HSE
Sbjct: 581 RVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSE 640

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           + A+A+GL+  PEG  IR+MKNLRVCGDCHS IK ++ IT R II+RDANRFHHF+ G C
Sbjct: 641 RQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFC 700

Query: 572 SCRDYW 577
           SCRDYW
Sbjct: 701 SCRDYW 706



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 66/305 (21%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK-----------------VAD 138
           N LL  Y  ++    A  LF  M  RD  S++ ++ G S                     
Sbjct: 52  NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPS 111

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
            ++     R ++R G+  D+  L    +   +R  +      + ++L   LD  +     
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRL---FQQMPERNHVS-----YTVLLGGLLDAGR----- 158

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
                     +++AR+LFD+MP RD+V WT M+                  Y + G I  
Sbjct: 159 ----------VNEARRLFDEMPDRDVVAWTAMLSG----------------YCQAGRITE 192

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR +FD M ++NV+SW+AMI+ Y  +G+   A  LF +M       N +++ ++L     
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQ 248

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G VE+   LF++M +       V     M+   G+ G +D A  + E M  E+D+G W 
Sbjct: 249 AGHVEDAAELFNAMPEH-----PVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWS 302

Query: 379 ALLGA 383
           A++ A
Sbjct: 303 AMIKA 307



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 35/311 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETF- 146
           +++    LL  Y  H  L DA  LF  M ER+ VS++V++GG     +V +    F+   
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170

Query: 147 -REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            R+ +     L  Y        C+  + I   R + D + K  +        A++  YA+
Sbjct: 171 DRDVVAWTAMLSGY--------CQAGR-ITEARALFDEMPKRNV----VSWTAMISGYAQ 217

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLL----DVILGTAVIDMY 250
              ++ AR+LF+ MP R+ V+WT M+            A  F       V    A++  +
Sbjct: 218 NGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGF 277

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            + G +D+A+ +F++M +++  +WSAMI AY  +    +AL  F  ML   V PN  + +
Sbjct: 278 GQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVI 337

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L  C+   +++ G  + ++M    +   DV   + ++ +  + G LD+A ++  +   
Sbjct: 338 SILTVCAALAVLDYGREVHAAML-RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFE- 395

Query: 371 EKDEGLWGALL 381
            KD  +W +++
Sbjct: 396 PKDIVMWNSMI 406



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 29/238 (12%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           AL+  Y + ++ D A  LF +MP+RDL ++  +I         +      D  A   SI 
Sbjct: 53  ALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTL-----PDAAAALASIP 107

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
                       +V+S+++++  Y  HG    A+ LF  M       N +++  LL    
Sbjct: 108 F---------PPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLL 154

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V E  RLF  M D      DV  +T M+    +AGR+ EA  L + M  +++   W
Sbjct: 155 DAGRVNEARRLFDEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVVSW 208

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            A++     +  V+L    A+ L E  P+ N   +  +   Y  AG  +D A++ + M
Sbjct: 209 TAMISGYAQNGEVNL----ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 46/227 (20%)

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A I   A+ G+I+ AR  F+ M  +   S++A++A Y  +     AL LF  M S  + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 304 -----------------------------PNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
                                        P+ ++F SLL      GL+ + +RLF  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 335 DFAVRPDVKH--YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVD 391
                P+  H  YT ++  L  AGR++EA +L + M  ++D   W A+L G C+  +  +
Sbjct: 139 -----PERNHVSYTVLLGGLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGRITE 192

Query: 392 LAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
                A++L +  P+ N   +  + + YA  G      K+ ++M  R
Sbjct: 193 -----ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER 234



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 56  RSVDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           R V P +   IS L  C  +  +   R+VHA ++      ++   + L+ +Y     L  
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+  + +D V W+ M+ G+++          F +    GM  D  T    + AC  
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 171 RKDIVMGR-LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
              +  GR + + + + S +       + +VD+  +  ++++A  L   MP   D V W 
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 229 VMIGA 233
            ++GA
Sbjct: 507 ALMGA 511


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 315/557 (56%), Gaps = 55/557 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           ++++H   +    + N +VAN  +  YA   +L+ A  +F+G++ +   SW+ ++GG ++
Sbjct: 164 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 223

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D     +   +    G+  DS+T+  ++ AC   K + +G+ +H  ++++ L+ D FV
Sbjct: 224 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 283

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG---------------------- 232
             +++ +Y  C  +   + LFD M  + LV+W TV+ G                      
Sbjct: 284 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 343

Query: 233 -----------------------------ANKFLL--DVILGTAVIDMYAKCGSIDSARE 261
                                        A K LL  D  +  ++IDMYAK GSI  + +
Sbjct: 344 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 403

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+ +++K+  SW+AMI  YG HG  K+A+ LF  M  +   P+ +TF+ +L AC+H+GL
Sbjct: 404 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 463

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGAL 380
           + EGLR    M   F ++P++KHY C++D+LGRAG+LD+AL+++ E MS E D G+W +L
Sbjct: 464 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 523

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L +CRIH+N+++ E  A  L E +P+ P +YVLLSN+YA  G+W+DV K+R  M    L+
Sbjct: 524 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 583

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G +WIE+  K+  F VG+      EEI  +   L  K+   GY PDT    HD+ EE
Sbjct: 584 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEE 643

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K+  L  HSEKLA+ +GLI T EGT IR+ KNLR+C DCH+  K +S +  R I+VRD 
Sbjct: 644 EKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 703

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF+ G CSC DYW
Sbjct: 704 KRFHHFKNGVCSCGDYW 720



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 158/407 (38%), Gaps = 63/407 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R I   + VH   V       L++ N L+ +Y+    +T+A  +F     ++ VSW+ MV
Sbjct: 56  REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 115

Query: 131 GGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           GGFS   D    F+  R+ +  G  ++ D  T+   +  C     +   + +H   LK  
Sbjct: 116 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 175

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN------KFLLDVIL 242
              ++ V  A V  YAKC  +  A+++F  + ++ + +W  +IG +      +  LD  L
Sbjct: 176 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 235

Query: 243 ----------GTAVIDMYAKCGSIDSAR-------------------------------- 260
                        V  + + C  + S R                                
Sbjct: 236 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 295

Query: 261 ------EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                  +FD M  K+++SW+ +I  Y  +G   +AL +F  M+   +    I+ + +  
Sbjct: 296 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 355

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACS    +  G    +       +  D      ++D+  + G + ++ K+   +  EK  
Sbjct: 356 ACSLLPSLRLGREAHAYALKHL-LEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 413

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNVYA 419
             W A++    IH    LA+ A K    ++R   NP     L  + A
Sbjct: 414 ASWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 457



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 6/118 (5%)

Query: 121 RDSVSWSVMV-----GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           R+ VSW+ M+      GFS+   F+   E   E        D  TL  V+  C   ++I 
Sbjct: 1   RNFVSWNSMIRVFSDNGFSE-ESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIG 59

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           +G+ +H   +K  LD +  +  AL+DMY+KC  I +A+ +F     +++V+W  M+G 
Sbjct: 60  LGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGG 117


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/546 (38%), Positives = 316/546 (57%), Gaps = 71/546 (13%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    +L  Y     +T+A ALF+ M +R+ VSW+ M+ G+++  + +N      E +
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGE-VNLARKLFEVM 231

Query: 151 RCGMQLDSYTLPFV--IRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
               ++ S+T   V  I+A    D  ++      H +            C A++  + + 
Sbjct: 232 PERNEV-SWTAMLVGYIQAGHVEDAAELFNAMPEHPVA----------ACNAMMVGFGQR 280

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLL------------------------- 238
            ++D A+ +F++M  RD  TW+ MI A   N+FL+                         
Sbjct: 281 GMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISIL 340

Query: 239 --------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                     DV   +A+I MY KCG++D A+ +F     K+++
Sbjct: 341 TVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIV 400

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
            W++MI  Y  HG G++AL +F  M  + + P+ IT++  L ACS+TG V+EG  +F+SM
Sbjct: 401 MWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSM 460

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
             + ++RP  +HY+CMVDLLGR+G ++EA  LI++M VE D  +WGAL+GACR+H+N ++
Sbjct: 461 TVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEI 520

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE AAK LLE +P N G YVLLS++Y + GRW+D +K+R  ++ R L K PG +WIE + 
Sbjct: 521 AEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDK 580

Query: 453 KIHQFSVGDS-THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           ++H F+ GD   HP+   I R+L  L   L  +GY  D +F LHD+DEE K  +L  HSE
Sbjct: 581 RVHLFTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSE 640

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           + A+A+GL+  PEG  IR+MKNLRVCGDCHS IK ++ IT R II+RDANRFHHF+ G C
Sbjct: 641 RQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFC 700

Query: 572 SCRDYW 577
           SCRDYW
Sbjct: 701 SCRDYW 706



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 66/305 (21%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK-----------------VAD 138
           N LL  Y  ++    A  LF  M  RD  S++ ++ G S                     
Sbjct: 52  NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPS 111

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
            ++     R ++R G+  D+  L    +   +R  +      + ++L   LD  +     
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRL---FQQMPERNHVS-----YTVLLGGLLDAGR----- 158

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
                     +++AR+LFD+MP RD+V WT M+                  Y + G I  
Sbjct: 159 ----------VNEARRLFDEMPDRDVVAWTAMLSG----------------YCQAGRITE 192

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR +FD M ++NV+SW+AMI+ Y  +G+   A  LF +M       N +++ ++L     
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQ 248

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G VE+   LF++M +       V     M+   G+ G +D A  + E M  E+D+G W 
Sbjct: 249 AGHVEDAAELFNAMPEH-----PVAACNAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWS 302

Query: 379 ALLGA 383
           A++ A
Sbjct: 303 AMIKA 307



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 147/311 (47%), Gaps = 35/311 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETF- 146
           +++    LL  Y  H  L DA  LF  M ER+ VS++V++GG     +V +    F+   
Sbjct: 111 SVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMP 170

Query: 147 -REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            R+ +     L  Y        C+  + I   R + D + K  +        A++  YA+
Sbjct: 171 DRDVVAWTAMLSGY--------CQAGR-ITEARALFDEMPKRNV----VSWTAMISGYAQ 217

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLL----DVILGTAVIDMY 250
              ++ AR+LF+ MP R+ V+WT M+            A  F       V    A++  +
Sbjct: 218 NGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGF 277

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            + G +D+A+ +F++M +++  +WSAMI AY  +    +AL  F  ML   V PN  + +
Sbjct: 278 GQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVI 337

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L  C+   +++ G  + ++M    +   DV   + ++ +  + G LD+A ++  +   
Sbjct: 338 SILTVCAALAVLDYGREVHAAML-RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFE- 395

Query: 371 EKDEGLWGALL 381
            KD  +W +++
Sbjct: 396 PKDIVMWNSMI 406



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 104/238 (43%), Gaps = 29/238 (12%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           AL+  Y + ++ D A  LF +MP+RDL ++  +I         +      D  A   SI 
Sbjct: 53  ALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLRRQTL-----PDAAAALASIP 107

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
                       +V+S+++++  Y  HG    A+ LF  M       N +++  LL    
Sbjct: 108 FP---------PSVVSFTSLLRGYVRHGLLADAIRLFQQMPER----NHVSYTVLLGGLL 154

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V E  RLF  M D      DV  +T M+    +AGR+ EA  L + M  +++   W
Sbjct: 155 DAGRVNEARRLFDEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMP-KRNVVSW 208

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            A++     +  V+L    A+ L E  P+ N   +  +   Y  AG  +D A++ + M
Sbjct: 209 TAMISGYAQNGEVNL----ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAM 262



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 46/227 (20%)

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            A I   A+ G+I+ AR  F+ M  +   S++A++A Y  +     AL LF  M S  + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 304 -----------------------------PNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
                                        P+ ++F SLL      GL+ + +RLF  M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM-- 138

Query: 335 DFAVRPDVKH--YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVD 391
                P+  H  YT ++  L  AGR++EA +L + M  ++D   W A+L G C+  +  +
Sbjct: 139 -----PERNHVSYTVLLGGLLDAGRVNEARRLFDEMP-DRDVVAWTAMLSGYCQAGRITE 192

Query: 392 LAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
                A++L +  P+ N   +  + + YA  G      K+ ++M  R
Sbjct: 193 -----ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER 234



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 80/185 (43%), Gaps = 7/185 (3%)

Query: 56  RSVDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           R V P +   IS L  C  +  +   R+VHA ++      ++   + L+ +Y     L  
Sbjct: 327 RGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDK 386

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+  + +D V W+ M+ G+++          F +    GM  D  T    + AC  
Sbjct: 387 AKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSY 446

Query: 171 RKDIVMGR-LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
              +  GR + + + + S +       + +VD+  +  ++++A  L   MP   D V W 
Sbjct: 447 TGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWG 506

Query: 229 VMIGA 233
            ++GA
Sbjct: 507 ALMGA 511


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/555 (36%), Positives = 300/555 (54%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +  H   +  G +T+ +  N L+ +Y        A  +F+ M  R  VSW+ M+ G++  
Sbjct: 77  KSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHS 136

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            + +   + F    R G  +  +TL   I AC  +  I   + +H I LK  LD + FV 
Sbjct: 137 GEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVG 196

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            A++D+YAKC +I DA  +F++MP R LVTW+ +                          
Sbjct: 197 TAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVE 256

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
             +F L  IL                                +++D+YA+CG I+ A  +
Sbjct: 257 LTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYAL 316

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M  KNV+ W+AMIA++  H    +A+ LF  M    + PN +T++S+L  CSH GLV
Sbjct: 317 FAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLV 376

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E+G   FS +  D  V P+V HY+CMVD+LGR+G+ DEA +L+  M  E    +WG+LLG
Sbjct: 377 EKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLG 436

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           +CR + N+ LA +AA+ L + +P N G++VLLSNVYA +G W++V   R  +     KK 
Sbjct: 437 SCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKE 496

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G +WIE + K+H F VG+  HP+  +IY  L  +  ++           +LHDV  E K
Sbjct: 497 MGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQK 556

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSEKLA++FGLI+ P    I I KNLR+CGDCHSF+K  + IT R++IVRD NR
Sbjct: 557 EELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNR 616

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G+CSC D+W
Sbjct: 617 FHHFKDGSCSCGDFW 631



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 75/322 (23%)

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           ++ C  RK +++G+  H + +  GL  D   C  L+++Y KC   D AR +FD M  R +
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 225 VTWTVMIG---------------------------------------------------- 232
           V+W  MI                                                     
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 233 ANKFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
           A K  LD    +GTA++D+YAKC  I  A  +F++M ++ +++WS++ A Y  +G  ++A
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEA 243

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-----DFAVRPDVKHY 345
           L LF       V     T  ++L AC+   L  EG++L + +       +F V       
Sbjct: 244 LHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAAS---- 299

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
             +VD+  R G++++A  L   M   K+  +W A++ +   H +       A  L E+  
Sbjct: 300 --LVDVYARCGQIEKAYALFAYME-HKNVVIWNAMIASFSRHAH----SWEAMILFEKMQ 352

Query: 406 Q-----NPGHYVLLSNVYANAG 422
           Q     N   Y+ + +V ++AG
Sbjct: 353 QLGIFPNEVTYLSVLSVCSHAG 374


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 324/574 (56%), Gaps = 63/574 (10%)

Query: 67  LLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +LSC     + Q   +H  ++  G+  +  +A KL+ +Y+   ++ +A  +F+  ++R  
Sbjct: 85  ILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTI 144

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM----GRL 179
             W+ +    +         + +R   R G+  D +T  +V++AC   +  V     GR 
Sbjct: 145 YVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGRE 204

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM-------------------- 219
           IH  +L+ G +    +   L+DMYA+   + +A ++FDQM                    
Sbjct: 205 IHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGK 264

Query: 220 PTRDLVTWTVMIGANKFLL----------------------------------DVILG-- 243
           P   L  +  M+  N+ LL                                  D IL   
Sbjct: 265 PLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVV 324

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           +A++ +YA+CG+++    +F+RM +++V+SW+++I++YG HG G+KA+ +F  M+   + 
Sbjct: 325 SALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLS 384

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ I+FVS+L ACSH GLVEEG  LF SM     + P V+HY CMVDLLGRA RLDEA K
Sbjct: 385 PSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAK 444

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           +I+ M +E    +WG+LLG+CRIH NV+LAE A   L E +P N G+YVLL+++YA A  
Sbjct: 445 IIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKM 504

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W +V +++ L+  R L+K+PG + IE+  KI+ F   D  +PQ E+++ +L+ LS +++ 
Sbjct: 505 WNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKE 564

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            GY+PDT   L+D+D E K   +  HSEKLA+AFGLI + +G  IRI KNLR+C DCHS 
Sbjct: 565 KGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSV 624

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            K +S    R I+VRD NRFH F+ G CSC DYW
Sbjct: 625 TKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 131/289 (45%), Gaps = 62/289 (21%)

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           +T   +I +C  +  +  G  +H  ++  G D D F+   L++MY++   ID+AR++FD+
Sbjct: 79  HTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDK 138

Query: 219 MPTRDLVTWTVM------------------------IGANKFLLDVILGTAV-------- 246
              R +  W  +                        + +++F    +L   V        
Sbjct: 139 TRKRTIYVWNALFRALTLAGYGREVLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSL 198

Query: 247 --------------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                     +DMYA+ G + +A  +FD+M  KNV+SWSAMIA 
Sbjct: 199 LLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIAC 258

Query: 281 YGYHGQGKKALDLF-PMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           Y  +G+  +AL+LF  MML ++ +LPN +T VS+L AC+    +E+G +L         +
Sbjct: 259 YSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQG-KLMHGYILRRGL 317

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
              +   + +V +  R G L+   ++ E M  ++D   W +L+ +  IH
Sbjct: 318 DSILPVVSALVTVYARCGNLELGHRVFERME-KRDVVSWNSLISSYGIH 365


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/557 (36%), Positives = 315/557 (56%), Gaps = 55/557 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           ++++H   +    + N +VAN  +  YA   +L+ A  +F+G++ +   SW+ ++GG ++
Sbjct: 414 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D     +   +    G+  DS+T+  ++ AC   K + +G+ +H  ++++ L+ D FV
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 533

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG---------------------- 232
             +++ +Y  C  +   + LFD M  + LV+W TV+ G                      
Sbjct: 534 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593

Query: 233 -----------------------------ANKFLL--DVILGTAVIDMYAKCGSIDSARE 261
                                        A K LL  D  +  ++IDMYAK GSI  + +
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 653

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+ +++K+  SW+AMI  YG HG  K+A+ LF  M  +   P+ +TF+ +L AC+H+GL
Sbjct: 654 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 713

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGAL 380
           + EGLR    M   F ++P++KHY C++D+LGRAG+LD+AL+++ E MS E D G+W +L
Sbjct: 714 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L +CRIH+N+++ E  A  L E +P+ P +YVLLSN+YA  G+W+DV K+R  M    L+
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G +WIE+  K+  F VG+      EEI  +   L  K+   GY PDT    HD+ EE
Sbjct: 834 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEE 893

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K+  L  HSEKLA+ +GLI T EGT IR+ KNLR+C DCH+  K +S +  R I+VRD 
Sbjct: 894 EKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 953

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF+ G CSC DYW
Sbjct: 954 KRFHHFKNGVCSCGDYW 970



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 68/377 (18%)

Query: 71  RNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           ++I   R++H Q+V+G T    + ++  +++ +YA+  +  D+  +F+ ++ ++   W+ 
Sbjct: 98  KDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNA 156

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           ++  +S+   +    ETF E I     L D +T P VI+AC    D+ +G  +H +V+K+
Sbjct: 157 VISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT 216

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------- 231
           GL  D FV  ALV  Y     + DA QLFD MP R+LV+W  MI                
Sbjct: 217 GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLL 276

Query: 232 -------GANKFLLDV-----------------------------------ILGTAVIDM 249
                  G   F+ DV                                   +L  A++DM
Sbjct: 277 GEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM 336

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNRI 307
           Y+KCG I +A+ IF     KNV+SW+ M+  +   G      D+   ML+    V  + +
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396

Query: 308 TFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           T ++ +  C H   +     L   S+  +F     V +    V    + G L  A ++  
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN--AFVASYAKCGSLSYAQRVFH 454

Query: 367 SMSVEKDEGLWGALLGA 383
            +   K    W AL+G 
Sbjct: 455 GIR-SKTVNSWNALIGG 470



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 158/407 (38%), Gaps = 63/407 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R I   + VH   V       L++ N L+ +Y+    +T+A  +F     ++ VSW+ MV
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365

Query: 131 GGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           GGFS   D    F+  R+ +  G  ++ D  T+   +  C     +   + +H   LK  
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 425

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN------KFLLDVIL 242
              ++ V  A V  YAKC  +  A+++F  + ++ + +W  +IG +      +  LD  L
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485

Query: 243 ----------GTAVIDMYAKCGSIDSAR-------------------------------- 260
                        V  + + C  + S R                                
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545

Query: 261 ------EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                  +FD M  K+++SW+ +I  Y  +G   +AL +F  M+   +    I+ + +  
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACS    +  G    +       +  D      ++D+  + G + ++ K+   +  EK  
Sbjct: 606 ACSLLPSLRLGREAHAYALKHL-LEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 663

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNVYA 419
             W A++    IH    LA+ A K    ++R   NP     L  + A
Sbjct: 664 ASWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 127/321 (39%), Gaps = 70/321 (21%)

Query: 130 VGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +  F +  D    F T +EF+           L    L  +++A   RKDI MGR IH +
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 184 VLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDV 240
           V  S  L  D  +C  ++ MYA C   DD+R +FD + +++L  W  +I   +   L D 
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169

Query: 241 ILGT-----------------------------------------------------AVI 247
           +L T                                                     A++
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALV 229

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR----VL 303
             Y   G +  A ++FD M ++N++SW++MI  +  +G  +++  L   M+        +
Sbjct: 230 SFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFM 289

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           P+  T V++L  C+     E GL      W     +  ++     ++D+  + G +  A 
Sbjct: 290 PDVATLVTVLPVCARER--EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA- 346

Query: 363 KLIESMSVEKDEGLWGALLGA 383
           ++I  M+  K+   W  ++G 
Sbjct: 347 QMIFKMNNNKNVVSWNTMVGG 367


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 301/557 (54%), Gaps = 56/557 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA  V  G + ++ V      +Y   +   DA  LF+ + ER+  +W+  +      
Sbjct: 78  KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 137

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E F EF R     +S T    + AC D   + +G  +H +VL+SG D D  VC
Sbjct: 138 GRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVC 197

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
             L+D Y KCK I  +  +F +M T++ V+W  ++ A                       
Sbjct: 198 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 257

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
            + F++  +L                              G+A++DMY KCG I+ + + 
Sbjct: 258 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 317

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTG 320
           FD M +KN+++ +++I  Y + GQ   AL LF  M        PN +TFVSLL ACS  G
Sbjct: 318 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 377

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE G+++F SM   + + P  +HY+C+VD+LGRAG ++ A + I+ M ++    +WGAL
Sbjct: 378 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 437

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
             ACR+H    L  +AA++L +  P++ G++VLLSN +A AGRW +   +R+ +    +K
Sbjct: 438 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 497

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++WI V+N++H F   D +H  ++EI   L  L  ++E AGY PD    L+D++EE
Sbjct: 498 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 557

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   +  HSEKLA+AFGL++ P    IRI KNLR+CGDCHSF K VS   +R IIVRD 
Sbjct: 558 EKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 617

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFH F+ G CSC+DYW
Sbjct: 618 NRFHRFKDGICSCKDYW 634



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 71/377 (18%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R+ VSW+ ++ G ++   F      F E  R G+  + +T P   +A    +  V G+ I
Sbjct: 21  RNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI 80

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GAN 234
           H + +K G  +D FV  +  DMY K ++ DDAR+LFD++P R+L TW   I      G  
Sbjct: 81  HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRP 140

Query: 235 KFLLDVILGTAVIDMYAK----CGSIDSA-----------------REIFD--------- 264
           +  ++  +    ID +      C  +++                  R  FD         
Sbjct: 141 REAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGL 200

Query: 265 --------RMRQKNVI----------SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
                   ++R   +I          SW +++AAY  + + +KA  L+       V  + 
Sbjct: 201 IDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSD 260

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEAL 362
               S+L AC+    +E G  + +      AV+  V+      + +VD+ G+ G ++++ 
Sbjct: 261 FMISSVLSACAGMAGLELGRSIHAH-----AVKACVERTIFVGSALVDMYGKCGCIEDSE 315

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLA-----EMAAKSLLERQPQNPGHYVLLSNV 417
           +  + M  EK+     +L+G       VD+A     EMA +        N   +V L + 
Sbjct: 316 QAFDEMP-EKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGC--GPTPNYMTFVSLLSA 372

Query: 418 YANAGRWQDVAKIRDLM 434
            + AG  ++  KI D M
Sbjct: 373 CSRAGAVENGMKIFDSM 389



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY+K    +SAR +      +NV+SW+++I+    +G    AL  F  M    V+PN  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 309 F 309
           F
Sbjct: 61  F 61


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/618 (34%), Positives = 328/618 (53%), Gaps = 94/618 (15%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDA 111
           F  ++      + L +C N+ Q  ++ +Q++  G +++   A++LL          L  +
Sbjct: 23  FKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYS 82

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +F+ ++  +   W+ M+  + +          ++  ++  +  D+YT P V++AC  R
Sbjct: 83  LQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVR 142

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD-------------- 217
                G+ IHD VLK G D D +V   L++MYA C  + DAR+LFD              
Sbjct: 143 LLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSIL 202

Query: 218 --------------------QMPTRDLVTWTVMI-------------------GANKFLL 238
                               +M  +D+V+W+ +I                    AN   L
Sbjct: 203 AGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 262

Query: 239 DVILGTAVI---------------------------------------DMYAKCGSIDSA 259
           D ++  +V+                                       DMY KCG +++A
Sbjct: 263 DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENA 322

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
            E+F+ M +K V SW+A+I     +G  +++LD+F  M ++ V+PN ITF+ +L AC H 
Sbjct: 323 LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHM 382

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GLV+EG   F+SM +   + P+VKHY CMVDLLGRAG L+EA KLIESM +  D   WGA
Sbjct: 383 GLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGA 442

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LLGAC+ H + ++ E   + L+E QP + G +VLLSN++A+ G W+DV ++R +M ++ +
Sbjct: 443 LLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGV 502

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
            K PG + IE    +H+F  GD THP   ++  ML  ++++L++ GY PDTN    D+DE
Sbjct: 503 VKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDE 562

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E K   L+ HSEKLAIAFGL+     T IRIMKNLR+C DCH+  K +S    R I+VRD
Sbjct: 563 EEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRD 622

Query: 560 ANRFHHFEGGACSCRDYW 577
            +RFH+F+ GACSC DYW
Sbjct: 623 RHRFHYFKEGACSCMDYW 640


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/541 (38%), Positives = 304/541 (56%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++ N ++      K + +A  LF  M +RDS++W+ MV GF++        E FR   
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMR 264

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D YT   ++ AC     +  G+ IH  ++++  D + FV +ALVDMY+KC+ I 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIK 324

Query: 211 DARQLFDQMPTRDLVTWTVMI--------------------------------------- 231
            A  +F +M  +++++WT +I                                       
Sbjct: 325 LAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCA 384

Query: 232 -------GANKFLLDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                  GA    L ++ G         A++ +Y KCGSI+ A  +FD M   + +SW+A
Sbjct: 385 NLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 444

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +++ Y   G+ K+ +DLF  ML+  V P+ +TF+ +L ACS  G VE+G   F SM  D 
Sbjct: 445 LVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDH 504

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  R+G+L EA + I+ M +  D   WG LL ACR+  ++++ + A
Sbjct: 505 GIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWA 564

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A++LLE  PQNP  YVLL +++A  G+W +VA++R  M  R++KK PG +WI+ +NK+H 
Sbjct: 565 AENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHI 624

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D +HP S+ IY  L  L+ K+   GY PD +  LHDV +  KV  +  HSEKLAIA
Sbjct: 625 FSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIA 684

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI  P+   IRI+KNLRVC DCH+  K +S IT R I+VRDA RFH F  G CSC D+
Sbjct: 685 FGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDF 744

Query: 577 W 577
           W
Sbjct: 745 W 745



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 167/406 (41%), Gaps = 102/406 (25%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL   A  + L+D  ALF  M +RD VS++ ++ GFS           +   +
Sbjct: 71  NLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALL 130

Query: 151 RC--GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK--- 205
           +    ++    T+  ++ A     D  +G+  H  +L+ G   + FV + LVDMYAK   
Sbjct: 131 QADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSL 190

Query: 206 ----------------------------CKVIDDARQLFDQMPTRDLVTWTVMI------ 231
                                       CK++++AR+LF+ M  RD +TWT M+      
Sbjct: 191 VGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQN 250

Query: 232 GANKFLLDVI----LGTAVIDMY------AKCGSIDS----------------------- 258
           G     L++          ID Y        CG++ +                       
Sbjct: 251 GLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVG 310

Query: 259 ---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                          A  +F RM  KN+ISW+A+I  YG +G  ++A+ +F  M    + 
Sbjct: 311 SALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGID 370

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLD 359
           P+  T  S++ +C++   +EEG +         A+   + HY      +V L G+ G ++
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHC-----LALVSGLMHYITVSNALVTLYGKCGSIE 425

Query: 360 EALKLIESMSVEKDEGLWGALLGA----CRIHKNVDLAE-MAAKSL 400
           +A +L + MS   D+  W AL+       R  + +DL E M AK +
Sbjct: 426 DAHRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEKMLAKGV 470



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 49/215 (22%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           L+  Y K      AR++FD MP  +L T+      N  L  +     + DM A       
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTY------NALLSTLAHARLLSDMEA------- 93

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS--SRVLPNRITFVSLLYAC 316
              +F  M Q++++S++A+IA +   G   +A+ ++  +L   S V P+RIT  +++ A 
Sbjct: 94  ---LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAA 150

Query: 317 SHTGLVEEG-------LRL-----------FSSMWDDFAVRPDVKH------------YT 346
           S  G    G       LRL              M+   ++  D K             Y 
Sbjct: 151 SALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYN 210

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            M+  L R   ++EA +L E M+ ++D   W  ++
Sbjct: 211 TMITGLLRCKMVEEARRLFEVMT-DRDSITWTTMV 244


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/560 (38%), Positives = 312/560 (55%), Gaps = 61/560 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS-- 134
           R++H+++   G     I  N L+ +YA    L +A A+FNG+ ER  VSWS M+G ++  
Sbjct: 5   RRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALH 64

Query: 135 -KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG--LDI 191
            +  + +  F   R   R  ++ ++ T   V  AC   +D+  GR IH + + SG     
Sbjct: 65  GRGQEALLLFHRMRNDGR--VEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSS 122

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQM-------------------------------- 219
           +  +  AL++MY +C  +++AR++FD M                                
Sbjct: 123 NAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMN 182

Query: 220 ----PTRDLVTWTVM------------------IGANKFLLDVILGTAVIDMYAKCGSID 257
               P   +   +V+                  + A+ F   V+  TA++DMYAKCGS++
Sbjct: 183 LEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            + ++F  M  +N +SW+AMIAA   HGQG +AL+LF  M    ++ +  TF+ +L ACS
Sbjct: 243 CSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACS 302

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GL++E L  F SM +D+A+ P   HY   +D +GRAGRL +A +LI SM    +   W
Sbjct: 303 HAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTW 362

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LL ACRIH   + A   A+ L +  P++   Y LL NVYA  GR+ D  ++R  MT R
Sbjct: 363 KTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDR 422

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            LKK+PG ++IEV+NK+H+F  GD  HP  +EI   L  L  ++  AGY+P+T   LH V
Sbjct: 423 GLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAV 482

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +EE K   +  HSEKLAIAFGLIATP GT + I+KNLRVC DCH+  K ++ I RR I+V
Sbjct: 483 NEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVV 542

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD +RFHHFE G CSC+DYW
Sbjct: 543 RDTHRFHHFEDGQCSCKDYW 562



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 109/274 (39%), Gaps = 59/274 (21%)

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           GR IH  +   G          LV MYAKC  +D+AR +F+ +  R +V+W+ MIGA   
Sbjct: 4   GRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYAL 63

Query: 234 -----NKFLL------------DVILGTAVIDMYAKCGSIDSAREI-------------- 262
                   LL            + +  T V +       ++  REI              
Sbjct: 64  HGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSN 123

Query: 263 -----------------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                                  FD M   +  SW++MI A   + +  +AL+LF  M  
Sbjct: 124 AILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNL 183

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             + P  +T  S+L AC+ +G ++ G ++ S + D       V   T ++D+  + G L+
Sbjct: 184 EGIPPTSVTLASVLNACACSGALKVGKQIHSRL-DASGFHSSVLAQTALLDMYAKCGSLE 242

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            + K+  +M   ++   W A++ A   H   D A
Sbjct: 243 CSSKVFTAMET-RNSVSWTAMIAALAQHGQGDEA 275


>gi|225432322|ref|XP_002276230.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Vitis vinifera]
          Length = 606

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/574 (37%), Positives = 316/574 (55%), Gaps = 59/574 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I  L  C +I  +   H  ++  G L +    N L+  Y   +   DA  LF  M+E +
Sbjct: 33  LIQRLQDCNDITSVSFSHTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEEMREPN 92

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            +S++ ++ GF KV    +    F + +   +  +++T   V+ AC    D+  G+ IH 
Sbjct: 93  VISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTGQKIHS 152

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
            V   G+  +  VC++L+DMY KC  +DDAR++FD M  R++V+WT MI A         
Sbjct: 153 HVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQNALGEC 212

Query: 234 ----------------NKFLL------------------------------DVILGTAVI 247
                           N F+L                              + ++ +A++
Sbjct: 213 ALQLFREFNGLPLSSPNHFMLASVINACASLGRLVSGKVAHAAVIRRGHESNDVVASALV 272

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG I  + ++F R+   +VI +++MI     +G GK +LD+F  ML  R+ PN +
Sbjct: 273 DMYAKCGCIGYSDKVFRRIPDPSVIPYTSMIVGAAKYGLGKFSLDIFKEMLDRRIKPNDV 332

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TFV +L+ACSH+GLV++GL    SM     V PD KHYTC+VD+LGR GRLDEA +L +S
Sbjct: 333 TFVGVLHACSHSGLVDDGLEYLHSMHKKHGVVPDTKHYTCVVDMLGRTGRLDEAHQLAKS 392

Query: 368 MSVEKDEG--LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           + VE D+G  LWG LL A R++  VD+A  A+K L+E   Q    YV +SN YA AG+W+
Sbjct: 393 IQVEPDQGALLWGTLLSASRLYGRVDIAVEASKWLIESNQQVAAAYVTMSNTYAMAGKWE 452

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD-STHPQSEEIYRMLVTLSEKLELA 484
           +V  IR  M    + K PG +W+E+ +  + F  GD S   +  E+  +L  L  +++  
Sbjct: 453 NVHSIRYEMKHYGVYKEPGCSWVEIRDSAYVFYAGDVSLCARGSEVASLLRELERRMKER 512

Query: 485 GYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           GY+  +   +  DV+EE K   +  HSE+LA+AFGLI+ P+G  IR+MKNLR+C DCH  
Sbjct: 513 GYVGGSRGLVSIDVEEEAKEEIVGLHSERLALAFGLISIPKGVTIRVMKNLRMCRDCHEA 572

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            K +S I  R  +VRD NRFHHFE G+C+CRD+W
Sbjct: 573 FKLISEIVERDFVVRDVNRFHHFENGSCTCRDFW 606



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 61/225 (27%)

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           +T   +I+  +D  DI      H  VLKSG   D F    L++ Y + +  +DA QLF++
Sbjct: 28  HTKTQLIQRLQDCNDITSVSFSHTNVLKSGFLNDTFTTNHLINSYVRIRRTNDASQLFEE 87

Query: 219 MPTRDLVTWTVMIGA------------------------NKFLL---------------- 238
           M   +++++T ++                          N F                  
Sbjct: 88  MREPNVISFTSLMAGFIKVGRPKSALLIFCKMLESWVLPNAFTFATVVNACSMLADLRTG 147

Query: 239 --------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                         ++++ +++IDMY KC ++D AR +FD M  +NV+SW++MI AYG +
Sbjct: 148 QKIHSHVEMFGVQCNLVVCSSLIDMYGKCNNVDDARRVFDGMDYRNVVSWTSMITAYGQN 207

Query: 285 GQGKKALDLF----PMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
             G+ AL LF     + LSS   PN     S++ AC+  G +  G
Sbjct: 208 ALGECALQLFREFNGLPLSS---PNHFMLASVINACASLGRLVSG 249


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 299/555 (53%), Gaps = 67/555 (12%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+H Q++  G   N+ V++ L+ +YA H  L  A  +F  +KE D VSW+ M+ G+++ 
Sbjct: 458 EQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQH 517

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F      F+E    G++ D+      I AC   + +  GR IH     SG   D  + 
Sbjct: 518 DKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIG 577

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------------NKFLLD 239
            ALV +YA+C  + +A   FDQ+  +D V+W  ++                   NK  L+
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLE 637

Query: 240 V---ILGTAV----------------------------------IDMYAKCGSIDSAREI 262
           +     G+AV                                  I +YAKCG+ID     
Sbjct: 638 INSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD---- 693

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
                    ISW++MI  Y  HG G +AL LF  M    VLPN +TFV +L ACSH GLV
Sbjct: 694 ---------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLV 744

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG+  F SM +   + P  +HY C+VDLLGR+G L  A + +E M ++ D  +W  LL 
Sbjct: 745 DEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLS 804

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC +HKN+D+ E AA  LLE +P++   YVL+SN+YA +G+W    + R +M  R +KK 
Sbjct: 805 ACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKE 864

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +W+EV+N +H F  GD  HP+++ IY  L  L  +    GY+P  N  L D +   K
Sbjct: 865 PGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQK 924

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
                 HSE+LAIAFGL++    T + + KNLRVC DCH++IKHVS IT RVIIVRD+ R
Sbjct: 925 DPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYR 984

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G+CSC+DYW
Sbjct: 985 FHHFKVGSCSCKDYW 999



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 51/351 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H  ++  G  +   V N L+ +Y+    L+ A  +F+ M +RD VS++ ++ G ++ 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQ 330

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    F++      + D  T+  ++ AC     +  G+  H   +K+G+  D  V 
Sbjct: 331 GYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVE 390

Query: 197 AALVDMYAKCKVIDDAR----------------QLFDQMPTRDLV----------TWTVM 230
            +L+D+Y KC  I  A                 Q+F QM    +V               
Sbjct: 391 GSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTT 450

Query: 231 IGANK-------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           +GA               F  +V + + +IDMYAK G +D A +IF R+++ +V+SW+AM
Sbjct: 451 LGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAM 510

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL-----FSSM 332
           IA Y  H +  +AL+LF  M    +  + I F S + AC+    +++G ++      S  
Sbjct: 511 IAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGY 570

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            DD ++         +V L  R G++ EA    + +   KD   W +L+  
Sbjct: 571 SDDLSIG------NALVSLYARCGKVREAYAAFDQI-YAKDNVSWNSLVSG 614



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 151/351 (43%), Gaps = 55/351 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           + Q+HA+ +  G  ++  + N L+ +Y  +  L+ A  +F  +K RDSVSW  M+ G S+
Sbjct: 183 VEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQ 242

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                N +E     + C +         V+ AC   +    G+ +H +VLK G   + +V
Sbjct: 243 -----NGYEEEAMLLFCQI---------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYV 288

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------NKFLL---------- 238
           C ALV +Y++   +  A Q+F  M  RD V++  +I         N+ L           
Sbjct: 289 CNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQ 348

Query: 239 --DVILGTAVIDMYAKCGSIDSARE-----IFDRMRQKNVISWSAM-------------- 277
             D +   +++   A  G++ + ++     I   M    V+  S +              
Sbjct: 349 KPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHE 408

Query: 278 -IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
               YG      K+  +F  M    ++PN+ T+ S+L  C+  G  + G ++ + +    
Sbjct: 409 FFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT- 467

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             + +V   + ++D+  + G+LD ALK+   +  E D   W A++     H
Sbjct: 468 GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMIAGYTQH 517


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 320/588 (54%), Gaps = 87/588 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H  I+  G      ++N L+ +Y     + DA  LFN +  RD +SW+ ++   ++ 
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQA 82

Query: 137 ADFINCFETFRE-FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                    F   F + G+Q D Y    +++AC     +  G+ +H   + S +  D  V
Sbjct: 83  NLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVV 142

Query: 196 CAALVDMYAKCKVID-------------------------------DARQLFDQMPTRDL 224
            ++LVDMYAKC + D                               DA QLF +MP ++L
Sbjct: 143 KSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL 202

Query: 225 VTWTVMIGA-------------------------NKFLLDVILG---------------- 243
           ++WT +I                           + F+L  I+G                
Sbjct: 203 LSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHC 262

Query: 244 --------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                          A++DMYAKC  + +A++IF RM Q++++SW+++I     HG  ++
Sbjct: 263 LVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEE 322

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL L+  MLS+ + PN +TFV L+YACSH GLV +G   F+SM  D+ + P ++HYTC++
Sbjct: 323 ALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLL 382

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLL R+G L+EA  LI++M  + DE  W ALL AC  H+N  +    A  LL  +P++P 
Sbjct: 383 DLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLLSLKPEDPS 442

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            Y+LLSN+YA+A  W+ V+K+R LM    +KK PG++ I +  +   F  G+++HP  EE
Sbjct: 443 TYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEE 502

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           I+ +L  L  +++  GYIPDT+  LHD++++ K   L+ HSE+LA+A+GL+    G  + 
Sbjct: 503 IFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLH 562

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLRVCGDCH+ +K +S I +R I+VRDANR+HHF+ G CSC ++W
Sbjct: 563 IVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNFW 610



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 17/223 (7%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L + ++AC   +   +G+ +H  ++K+G+D  + +   L++MY KC +I DA  LF+Q+P
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
            RD ++W  ++ AN       L    + M+      D          Q +   ++ ++ A
Sbjct: 66  HRDPISWASILTANN---QANLPHLTLSMFPAMFKQDGL--------QPDHYVFACLVKA 114

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
               G  K+   +    + S V  + +   SL+   +  GL + G  +F S+    ++  
Sbjct: 115 CAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSIS- 173

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
               +T M+    ++GR  +A++L + M V K+   W AL+  
Sbjct: 174 ----WTAMISGYAQSGRKLDAIQLFQKMPV-KNLLSWTALISG 211


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/613 (34%), Positives = 338/613 (55%), Gaps = 97/613 (15%)

Query: 60  PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI------YALHKA---LTD 110
           PK  ++ L SC +   ++ +H  ++    ++++ VA++LL +         HK    L  
Sbjct: 14  PK--LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGY 71

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A+ +F+ ++  +   ++V++  FS  A+    F  + + ++  +  D+ T PF+I+A  +
Sbjct: 72  AYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTE 131

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA-------------------------- 204
            + +V+G   H  +++ G   D +V  +LV MYA                          
Sbjct: 132 MECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSM 191

Query: 205 -----KCKVIDDARQLFDQMPTRDLVTWTVMI---------------------------- 231
                KC +++DAR++FD+MP R+L TW++MI                            
Sbjct: 192 VAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANE 251

Query: 232 -------------GANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDR 265
                        GA +F              +++ILGTA++DMY +CG I+ A  +F+ 
Sbjct: 252 TVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEE 311

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           +  K+ +SWS++I     HG   KA+  F  M+     P  IT  ++L ACSH GLV++G
Sbjct: 312 LPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKG 371

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           L ++ +M  D+ + P ++HY C+VD+LGRAG+L EA   I  M V+ +  + GALLGAC+
Sbjct: 372 LEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACK 431

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           I+KN ++AE     L+E +P++ G+YVLLSN+YA AG+W+ +  +RD+M  + +KK PGW
Sbjct: 432 IYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGW 491

Query: 446 TWIEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
           + IE++ KI++FS+G D  HP+  +I R+   +  K+ L GY  +T     DVDEE K  
Sbjct: 492 SLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDVDEEEKET 551

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            ++ HSEKLAIA+G++ T  GT IRI+KNLRVC DCH+  K +S +  R  IVRD NRFH
Sbjct: 552 AIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIVRDRNRFH 611

Query: 565 HFEGGACSCRDYW 577
           HF  G CSCRDYW
Sbjct: 612 HFRNGLCSCRDYW 624


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 324/606 (53%), Gaps = 68/606 (11%)

Query: 33  HGHEQNPMNPRVPMQMGPDCQFTRSVDPKFF-ISSLLSCRNIFQI------RQVHAQIVA 85
           HGH+Q+ +   + M+       +  + P  F +SS+L              RQ+H  ++ 
Sbjct: 281 HGHDQHALELLLQMK-------SSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIK 333

Query: 86  GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFET 145
               ++  +   L+ +YA +  L DA  +F  +  +D + W+ ++ G S           
Sbjct: 334 ACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSL 393

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           F    + G  ++  TL  V+++    + I     +H +  K G   D  V   L+D Y K
Sbjct: 394 FCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWK 453

Query: 206 CKVI-------------------------------DDARQLFDQMPTR----DLVTWTVM 230
           C  +                               +DA +LF +M  +    D    + +
Sbjct: 454 CNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSL 513

Query: 231 IGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           + A                    KF+ DV  G A++  YAKCGSI+ A   F  +  K V
Sbjct: 514 LNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGV 573

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           +SWSAMI     HG GK+ALD+F  M+  R+ PN IT  S+L AC+H GLV+E    FSS
Sbjct: 574 VSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSS 633

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M + F +    +HY+CM+DLLGRAG+LD+A++L+ SM  E +  +WGALL A R+H++ +
Sbjct: 634 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPE 693

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           L ++AA+ L   +P+  G +VLL+N YA+AG W +VAK+R LM   ++KK P  +W+E++
Sbjct: 694 LGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELK 753

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           +++H F VGD +HP++ +IY  L  L + +  AGY+P+   +LHDVD+  K   L  HSE
Sbjct: 754 DRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSE 813

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           +LA+AF LI+TP G  IR+ KNLR+C DCH   K +S I  R II+RD NRFHHF  GAC
Sbjct: 814 RLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGAC 873

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 874 SCGDYW 879



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 169/397 (42%), Gaps = 90/397 (22%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GMKERDSVSWSVMVGGFSKV 136
           QVHA  V+ G   ++ VAN L+ +Y     + +A  +F+   ++R++VSW+ M+  F K 
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +  E F E +  G++ + +    V+ AC   +D+  GR +H +V+++G D D F  
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTA 240

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            ALVDMY+K   I  A  +F ++P  D+V+W   I                         
Sbjct: 241 NALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 234 -NKFLLDVIL--------------------------------GTAVIDMYAKCGSIDSAR 260
            N F L  IL                                G A++DMYAK G +D AR
Sbjct: 301 PNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDAR 360

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++F+ + +K+++ W+A+I+   + G   ++L LF  M       NR T  ++L + +   
Sbjct: 361 KVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLE 420

Query: 321 LVEEGLR-------------------LFSSMWDDFAVR-----------PDVKHYTCMVD 350
            + +  +                   L  S W    +R            ++  +T M+ 
Sbjct: 421 AISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMIT 480

Query: 351 LLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
            L +    ++A+KL   M    +E D  +  +LL AC
Sbjct: 481 ALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 157/385 (40%), Gaps = 64/385 (16%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            S+ P   ++   + +++F    +HA ++  G L      N LL  Y+  +    A  +F
Sbjct: 5   ESISP--LLTRYAATQSLFLGAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLPGSARRVF 60

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           +   +   VSWS +V  +S  A        FR     G++ + + LP V++   D     
Sbjct: 61  DETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAG--- 117

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA- 233
           +G  +H + + +GL  D FV  ALV MY     +D+AR++FD+    R+ V+W  M+ A 
Sbjct: 118 LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAF 177

Query: 234 -----------------------NKFLLDVIL---------------------------- 242
                                  N+F    ++                            
Sbjct: 178 VKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 243 --GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
               A++DMY+K G I  A  +F ++ + +V+SW+A I+    HG  + AL+L   M SS
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 301 RVLPNRITFVSLL-YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            ++PN  T  S+L              R             D      +VD+  + G LD
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 360 EALKLIESMSVEKDEGLWGALLGAC 384
           +A K+ E +   KD  LW AL+  C
Sbjct: 358 DARKVFEWIP-RKDLLLWNALISGC 381


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/536 (37%), Positives = 296/536 (55%), Gaps = 54/536 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N L+  Y  +  L  A  LF+ M  R+  +W+ MV G +           F    R GMQ
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D Y L  + R C   +D+V GR +H  V++SGLD D  V ++L  MY +C  + D    
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 216 FDQMPTRDLVTWTVMI----------GANKFL---------------------------- 237
              +P+ ++V+    I          GA +F                             
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 183

Query: 238 --------LDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                   L +  G        T+++ MY++CG +  +  +       +++  SAMI+AY
Sbjct: 184 AQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY 243

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
           G+HG G+KA+ LF  M+++   PN +TF++LLYACSH+GL +EG+  F  M   + ++P 
Sbjct: 244 GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPS 303

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           VKHYTC+VDLLGR+G L+EA  LI SM V+ D  +W  LL AC+  K  D+AE  A+ ++
Sbjct: 304 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E  P +   YVLLSN+ A + RW+DV+K+R+ M  + ++K PG +W+E++ +IHQF  GD
Sbjct: 364 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 423

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
            +H +  EI   L  +  ++   GY PD +   HD+++E K  +L  HSEKLAIAF  ++
Sbjct: 424 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 483

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            PEG  IR+MKNLRVC DCH  IK +S +  R I+VRD +RFHHF+ G CSC DYW
Sbjct: 484 LPEGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 324/582 (55%), Gaps = 75/582 (12%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P     R  D    I+  +  R + + RQVHA++VA G    L +A +L+ +YA   AL 
Sbjct: 28  PGAGAARFHDYDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALE 87

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           DA  + +GM ER+ VSW+ M+ G+S+       +E F   +R G+               
Sbjct: 88  DARNVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIH-------------- 133

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
                   + +H   +K+  ++  FV ++L+DMYAK + I +AR++FD +P RD+V++T 
Sbjct: 134 ------QVKQVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTA 187

Query: 230 MI------GANKFLLDVI------------------------------------------ 241
           ++      G ++  LD+                                           
Sbjct: 188 ILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRE 247

Query: 242 ------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                 L  ++IDMY+KCG +  +R +FD M +++V+SW+AM+  YG HG   + + LF 
Sbjct: 248 LPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFR 307

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M    V P+ +T +++L   SH GLV+EGL +F  +  + +   + +HY C++DLLGR+
Sbjct: 308 SM-CDEVKPDSVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRS 366

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G+L +AL LIE M  +    +WG+LLGACR+H NV + E  A+ LL+ +P+N G+YV+LS
Sbjct: 367 GQLQKALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILS 426

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA AG W+DV ++R LM ++ + K PG +W+ ++  IH F   +  HP+ E+I   + 
Sbjct: 427 NIYAAAGMWKDVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIK 486

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            +   ++ AG++PD +  LHDVD+E K   L  HSEKLAI FGL++TP    I++MKNLR
Sbjct: 487 EIYVAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLR 546

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +C DCH+F K VS +  R I +RD NRFH    GAC+C DYW
Sbjct: 547 ICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 588


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 316/576 (54%), Gaps = 60/576 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQ--VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +P   IS   S R + QI+   + + I     +  LI             +++ A  LF 
Sbjct: 31  NPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAKLI---NFCTESPTESSMSYARHLFE 87

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M E D V ++ M  G+S+  + +  F  F E +  G+  D+YT P +++AC   K +  
Sbjct: 88  AMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE 147

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM----------------- 219
           GR +H + +K GLD + +VC  L++MY +C+ +D AR +FD++                 
Sbjct: 148 GRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYAR 207

Query: 220 ---PTRDLVTWTVMIGA----------------------------------NKFLLDVIL 242
              P   L  +  M G                                   + F   V +
Sbjct: 208 RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKV 267

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            TA+IDM+AKCGS+D A  IF++MR K+  +WSAMI AY  HG+ +K++ +F  M S  V
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENV 327

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ ITF+ LL ACSHTG VEEG + FS M   F + P +KHY  MVDLL RAG L++A 
Sbjct: 328 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAY 387

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + I+ + +     LW  LL AC  H N+DLAE  ++ + E    + G YV+LSN+YA   
Sbjct: 388 EFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNK 447

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W+ V  +R +M  R+  K+PG + IEV N +H+F  GD     + +++R L  + ++L+
Sbjct: 448 KWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELK 507

Query: 483 LAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           L+GY+PDT+  +H +++++ K   L  HSEKLAI FGL+ TP GT IR++KNLRVC DCH
Sbjct: 508 LSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCH 567

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  K +S I  R +++RD  RFHHFE G CSC D+W
Sbjct: 568 NAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/576 (35%), Positives = 316/576 (54%), Gaps = 59/576 (10%)

Query: 61  KFFISSLL-SCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +F I+S+L +C ++ +     RQVH   +  G + +  V+  L+ +Y+    + +A  LF
Sbjct: 398 QFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF 457

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           +     D  SW+ M+ GF+   ++      F      G + D  T     +A      + 
Sbjct: 458 HNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQ 517

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV---------- 225
            G+ IH +V+K     D FV + ++DMY KC  +  AR++F+Q+P+ D V          
Sbjct: 518 QGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCV 577

Query: 226 -------------------------TWTVMIGANKFL-------------------LDVI 241
                                    T+  ++ A   L                    D  
Sbjct: 578 ENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPF 637

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           + T+++DMYAKCG+I+ A  +F RM  ++V  W+AMI     HG  ++AL+ F  M S  
Sbjct: 638 VMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRG 697

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V P+R+TF+ +L ACSH+GL  +  + F SM   + V P+++HY+C+VD L RAG + EA
Sbjct: 698 VTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEA 757

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            K++ SM  E    ++  LL ACR+  + +  E  A+ L    P +   YVLLSN+YA A
Sbjct: 758 EKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAA 817

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            +W++    R++M R  +KK PG++WI+++NK+H F  GD +H +++ IY  +  + +++
Sbjct: 818 NQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRI 877

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY+PDT F L D++EE K   L  HSEKLAIA+GL+ TP  T +R++KNLRVCGDCH
Sbjct: 878 KEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCH 937

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + IK++S + +R I++RDANRFHHF  G CSC DYW
Sbjct: 938 NAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 159/350 (45%), Gaps = 51/350 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN--GMKERDSVSWSVMVGGFS 134
           ++ HA IV  G   +  V N L+ +YA   +L  A  LF+     +RD V+++ ++  ++
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYA 92

Query: 135 KVADFIN------CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
              +  +       F  FR   +  M    +TL  + + C           +    +K G
Sbjct: 93  HTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIG 152

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248
           L  D FV  ALV++YAK + I +AR LFD+MP RD+V W VM+ A    +++  G  V+ 
Sbjct: 153 LQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKA---YVEMGAGDEVLG 209

Query: 249 MYAK---------CGSIDS------AREIFDRMRQK---------------NVISWSAMI 278
           +++          C S+ +       + +F+R  ++               +V  W+  +
Sbjct: 210 LFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTL 269

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM----WD 334
           ++Y   G+G +A+D F  M+ SRV  + +T++ +L   +    +E G ++  ++    WD
Sbjct: 270 SSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWD 329

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
            F     V      +++  +AG ++ A ++   M  E D   W  ++  C
Sbjct: 330 QF-----VSVANSAINMYVKAGSVNYARRMFGQMK-EVDLISWNTVISGC 373



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 176/418 (42%), Gaps = 38/418 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H  +V  G    + VAN  + +Y    ++  A  +F  MKE D +SW+ ++ G ++ 
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARS 376

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHDIVLKSGLDIDQFV 195
                    F + +R G+  D +T+  V+RAC    +   +GR +H   LK+G+ +D FV
Sbjct: 377 GLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFV 436

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
             AL+D+Y+K   +++A  LF      DL +W  M+           G  V D Y +   
Sbjct: 437 STALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMH----------GFTVSDNYREALR 486

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           + S   + +R  + + I+++    A G   + ++   +  +++  R   +      +L  
Sbjct: 487 LFSL--MHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDM 544

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEK 372
               G ++   ++F+ +       PD   +T ++      G  ++AL     M    V+ 
Sbjct: 545 YLKCGEMKSARKVFNQI-----PSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQP 599

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIR 431
           DE  +  L+ AC +   ++  +    ++++     +P     L ++YA  G  +D     
Sbjct: 600 DEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDA---Y 656

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
            L  R   + +  W         +   VG + H  +EE       +  +    G  PD
Sbjct: 657 GLFRRMNTRSVALW---------NAMIVGLAQHGNAEEALNFFNEMKSR----GVTPD 701



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 52/342 (15%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   ++ VA  L+ IYA  + + +A  LF+ M  RD V W+VM+  + ++         F
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLF 211

Query: 147 REFIRCGMQLDSYTLPFVIRACRDR----KDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
             F R G++ D  ++  ++     +    +++   R     +     D D  V    +  
Sbjct: 212 SAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSS 271

Query: 203 YAKC----KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG--------------- 243
           Y +     + +D  R +       D +T+ V++     L  + LG               
Sbjct: 272 YLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQF 331

Query: 244 ----TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                + I+MY K GS++ AR +F +M++ ++ISW+ +I+     G  + +L LF  +L 
Sbjct: 332 VSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLR 391

Query: 300 SRVLPNRITFVSLLYACS------------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           S +LP++ T  S+L ACS            HT  ++ G+ L     D F         T 
Sbjct: 392 SGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVL-----DSFVS-------TA 439

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
           ++D+  + G+++EA  L  +     D   W A++    +  N
Sbjct: 440 LIDVYSKGGKMEEAELLFHNQD-GFDLASWNAMMHGFTVSDN 480



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 92/228 (40%), Gaps = 57/228 (25%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-- 221
           ++R      D+++G+  H +++ SGL+ D++V   L+ MYAKC  +  AR+LFD  P   
Sbjct: 19  ILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSD 78

Query: 222 RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
           RDLVT+  ++ A                YA  G +    +  +                 
Sbjct: 79  RDLVTYNAILAA----------------YAHTGELHDVEKTHE----------------- 105

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG--LVEEGLRLFSS----MWDD 335
                   A  +F ++  S +L  R T   L   C   G     E L+ ++      WD 
Sbjct: 106 --------AFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDV 157

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           F           +V++  +  R+ EA  L + M V +D  LW  ++ A
Sbjct: 158 FVA-------GALVNIYAKFQRIREARVLFDRMPV-RDVVLWNVMMKA 197


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/596 (36%), Positives = 313/596 (52%), Gaps = 91/596 (15%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +F+  ++H       TL +  V    + +YA    +  A  +F+ M  RD V+W+ M+  
Sbjct: 127 LFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIER 186

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           + +       F+ F E     +  D   L  ++ AC    ++   R I++ ++++ + +D
Sbjct: 187 YCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMD 246

Query: 193 QFVCAALVDMYA-------------------------------KCKVIDDARQLFDQMPT 221
             +  ALV MYA                               KC  +DDA+ +FDQ   
Sbjct: 247 THLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEK 306

Query: 222 RDLVTWTVMIG-------------------------------------ANKFLLD----- 239
           +DLV WT MI                                      AN  +LD     
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366

Query: 240 ------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                       + +  A+I+MYAKCG +D+ R++F++M ++NV+SWS+MI A   HG+ 
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEA 426

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
             AL LF  M    V PN +TFV +LY CSH+GLVEEG ++F+SM D++ + P ++HY C
Sbjct: 427 SDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGC 486

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVDL GRA  L EAL++IESM V  +  +WG+L+ ACRIH  ++L + AAK +LE +P +
Sbjct: 487 MVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            G  VL+SN+YA   RW+DV  IR +M  + + K  G + I+   K H+F +GD  H QS
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQS 606

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
            EIY  L  +  KL+LAGY+PD    L DV+EE K   +  HSEKLA+ FGL+   +   
Sbjct: 607 NEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEE 666

Query: 528 ------IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
                 IRI+KNLRVC DCH F K VS +  R IIVRD  RFH ++ G CSCRDYW
Sbjct: 667 KDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 191/465 (41%), Gaps = 101/465 (21%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL--FNGMKER 121
           +  L  C+++  I+Q+HA I+   T+ N  + + L  +     ++  ++AL  F+ +   
Sbjct: 16  LEKLSFCKSLNHIKQLHAHILR--TVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSP 73

Query: 122 -DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            +S+ ++  +   S+ ++       ++     G +LD ++   +++A      +  G  +
Sbjct: 74  PESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMEL 133

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
           H +  K     D FV    +DMYA C  I+ AR +FD+M  RD+VTW  MI         
Sbjct: 134 HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193

Query: 232 ---------------------------------------GANKFLL--DVILGT----AV 246
                                                     +FL+  DV + T    A+
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253

Query: 247 IDMYAKCGSIDSARE-------------------------------IFDRMRQKNVISWS 275
           + MYA  G +D ARE                               IFD+  +K+++ W+
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MI+AY      ++AL +F  M  S + P+ ++  S++ AC++ G++++   + S +  +
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
             +  ++     ++++  + G LD    + E M   ++   W +++ A  +H        
Sbjct: 374 -GLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGEAS---- 427

Query: 396 AAKSLLERQPQ---NPGHYVLLSNVY--ANAGRWQDVAKIRDLMT 435
            A SL  R  Q    P     +  +Y  +++G  ++  KI   MT
Sbjct: 428 DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMT 472


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/519 (39%), Positives = 295/519 (56%), Gaps = 63/519 (12%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  M E+D VSW+ ++ G ++   +       RE     ++ DS+TL  V+    +  D
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVD 254

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-KVIDDAR------------------- 213
           I  G+ IH   ++ GLD D +V ++L+DMYAKC +V D  R                   
Sbjct: 255 ISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAG 314

Query: 214 ----QLFDQ-----------------------MPTRDLVTWTVMIGA--------NKFLL 238
                LFD+                       MP    +T T+ +G         N F  
Sbjct: 315 CVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT-TLHLGKQLHGYITRNGFDE 373

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           ++ + ++++DMYAKCG+I +A++IFDRMR ++++SW+AMI     HGQ   A++LF  M 
Sbjct: 374 NIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQME 433

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           +  +        ++L ACSH GLV+E  + F+SM  DF + P V+HY  + DLLGRAGRL
Sbjct: 434 TEGI-------KAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRL 486

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA   I  M +     +W  LL ACR+HKN+D+AE  A  +LE  P N G Y+LL+N+Y
Sbjct: 487 EEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNNTGAYILLANIY 546

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           + A RW++ AK R  M R  ++K P  +WIEV+NK++ F  GD +HP  E+I   +  L 
Sbjct: 547 SAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESHPCYEKIREAMEVLV 606

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E +E  GY+PDT+   HDV+EE K   + SHSE+LAI FG+I TP G  IR+ KNLRVC 
Sbjct: 607 ELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGMTIRVTKNLRVCT 666

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+  K +S I  R I+VRD +RFHHF+ G CSC DYW
Sbjct: 667 DCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 151/331 (45%), Gaps = 32/331 (9%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           K  + + LS ++  Q +Q+HAQ++     +   ++  L  IY+    L D+  LFN +  
Sbjct: 10  KALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLS-IYSHINLLHDSLRLFNTIHF 68

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
             +++W  ++  ++          +F   +  G+  D    P V+++C    D+ +G  +
Sbjct: 69  PPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESL 128

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDD-------ARQLFDQMPTRDLVTWTVMIGA 233
           H  +++ GLD D +   AL++MY+K + +++       A ++FD+M  R     TV + +
Sbjct: 129 HGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS 188

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                                  DS R+IF+ M +K+++SW+ +IA    +G  ++ L +
Sbjct: 189 E----------------------DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
              M  + + P+  T  S+L   +    +  G  +         +  D+   + ++D+  
Sbjct: 227 IREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQ-GLDADIYVASSLIDMYA 285

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           +  R+ ++ ++  ++  E+D   W +++  C
Sbjct: 286 KCTRVADSCRVF-TLLTERDGISWNSIIAGC 315


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 319/596 (53%), Gaps = 91/596 (15%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +F+  ++H       TL++  V   L+ +YA    +  A  +F+ M +RD V+W+ M+  
Sbjct: 130 LFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIER 189

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           + +       F+ F E     +  D   L  ++ AC    ++   R I+D ++++ + +D
Sbjct: 190 YCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMD 249

Query: 193 QFVCAALVDMYA-------------------------------KCKVIDDARQLFDQMPT 221
             +  ALV MYA                               K   +DDAR +FDQ   
Sbjct: 250 THLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEM 309

Query: 222 RDLVTWTVMIGANK-------------------------FLLDVI-----LGT------- 244
           +DLV WT MI A                            +L VI     LGT       
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV 369

Query: 245 -----------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                            A+I+MYAKCG +D+AR++F++M  +NV+SWS+MI A+  HG+ 
Sbjct: 370 HRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEA 429

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
             +L LF  M    V PN +TFV +LY CSH+GLVEEG ++F+SM D++ + P ++HY C
Sbjct: 430 SDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGC 489

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVDL GRA  L EAL++IESM +  +  +WG+L+ ACR+H  ++L E+AAK +L+ +P +
Sbjct: 490 MVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDH 549

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            G  VL+SN+YA   RW  V  IR +M ++++ K  G + I++  K H+F +GD  H QS
Sbjct: 550 DGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQS 609

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
            EIY  L  +  KL+LAGY+PD    L DV+EE K   +  HSEKLA+ FGL+   +   
Sbjct: 610 NEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEE 669

Query: 528 ------IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
                 IRI+KNLRVC DCH+F K VS +    IIVRD  RFH ++ G CSCRDYW
Sbjct: 670 KGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 147/336 (43%), Gaps = 34/336 (10%)

Query: 60  PKFFISS-------LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           P F +S+       L  C+++  I+Q+HA I+       L      L   +    L+ A 
Sbjct: 8   PSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYAL 67

Query: 113 ALFNGMKE-RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
            LF+ +    +S+ ++ ++   S+  +       ++     G + D  + P +++A    
Sbjct: 68  NLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKV 127

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             +  G  +H    K     D FV   L+DMYA C  I+ AR +FD+M  RD+VTW  M 
Sbjct: 128 SALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTM- 186

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS----WSAMIAAYGYHGQG 287
                          I+ Y + G +D A ++F+ M+  NV+        +++A G  G  
Sbjct: 187 ---------------IERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNM 231

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           +    ++  ++ + V  +     +L+   +  G ++  +  F  M    +VR ++   T 
Sbjct: 232 RYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKM----SVR-NLFVSTA 286

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           MV    +AGRLD+A ++I   +  KD   W  ++ A
Sbjct: 287 MVSGYSKAGRLDDA-RVIFDQTEMKDLVCWTTMISA 321



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 14/188 (7%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           IS+ ++   + + + VH      G  + L + N L+ +YA    L  A  +F  M  R+ 
Sbjct: 354 ISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNV 413

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI--- 180
           VSWS M+  F+   +  +    F +  +  ++ +  T   V+  C     +  G+ I   
Sbjct: 414 VSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFAS 473

Query: 181 ----HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANK 235
               ++I  K    I+ + C  +VD++ +  ++ +A ++ + MP   ++V W  ++ A +
Sbjct: 474 MTDEYNITPK----IEHYGC--MVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACR 527

Query: 236 FLLDVILG 243
              ++ LG
Sbjct: 528 VHGELELG 535


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 296/542 (54%), Gaps = 55/542 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N + +N L+  Y     L +A  +F+ M +R   +W+ M+ G  +          FRE  
Sbjct: 22  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 81

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G   D YTL  V       + + +G+ IH   +K GL++D  V ++L  MY +   + 
Sbjct: 82  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 141

Query: 211 DARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGTA- 245
           D   +   MP R+LV W  +I                          NK     +L +  
Sbjct: 142 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 201

Query: 246 -----------------------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                        +I MY+KCG +  A + F     ++ + WS+
Sbjct: 202 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 261

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           MI+AYG+HGQG +A++LF  M     +  N + F++LLYACSH+GL ++GL LF  M + 
Sbjct: 262 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 321

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           +  +P +KHYTC+VDLLGRAG LD+A  +I SM ++ D  +W  LL AC IHKN ++A+ 
Sbjct: 322 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQR 381

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
             K +L+  P +   YVLL+NV+A+A RW+DV+++R  M  + +KK  G +W E + ++H
Sbjct: 382 VFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 441

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           QF +GD +  +S+EIY  L  L+ +++L GY PDT   LHD+DEE K  +L  HSEKLA+
Sbjct: 442 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 501

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AF L+  PEG  IRI+KNLRVC DCH   K++S I  R I +RD +RFHHF  G CSC D
Sbjct: 502 AFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGD 561

Query: 576 YW 577
           YW
Sbjct: 562 YW 563


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/486 (42%), Positives = 284/486 (58%), Gaps = 51/486 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-- 153
           N L+  Y     +  A  LF  M+ R+ VSW+ M+ G+++          F E ++ G  
Sbjct: 251 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 310

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           M+ +  T+  V+ AC     +  GR IHD     GL ++  V                  
Sbjct: 311 MKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSV------------------ 352

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV 271
                                         TA+  MYAKC S+  AR  FD + Q  KN+
Sbjct: 353 -----------------------------QTALAGMYAKCYSLVEARCCFDMIAQNGKNL 383

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           I+W+ MI AY  HG G +A+ +F  ML + V P+ +TF+ LL  CSH+GL++ GL  F+ 
Sbjct: 384 IAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFND 443

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M    +V P V+HY C+VDLLGRAGRL EA +LI  M ++    +WGALL ACR H+N++
Sbjct: 444 MGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLE 503

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           +AE+AA+ L   +P N G+YVLLSN+YA AG W++V K+R L+  + +KK PG +WIE+ 
Sbjct: 504 IAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEIN 563

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            K H F   D +HPQ++EIY+ L  L EK+++AGYIPDT+F LHD+ EE K  NL +HSE
Sbjct: 564 GKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSE 623

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLAIAFGL+ T  G  +R+ KNLR+CGDCH+  K +S I  R IIVRD NRFH F+ G+C
Sbjct: 624 KLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSC 683

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 684 SCGDYW 689



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 148/271 (54%), Gaps = 22/271 (8%)

Query: 64  ISSLLSCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           I   L+  N  ++ +Q HAQIV  G   N  +A K++ +YA    L  A  +F+ +    
Sbjct: 83  IFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPS 142

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIR---CGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           S+ ++ ++  +++             + R    G+  D++TLPFV+++C D   + MGR 
Sbjct: 143 SLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRC 202

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           +H   L+ GL+ D +V A+L+DMY KC VI DAR+LFD+M  RD+ +W  +I        
Sbjct: 203 VHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAG------ 256

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML- 298
                     Y K G I  A ++F+RM  +N++SW+AMI+ Y  +G  ++AL LF  ML 
Sbjct: 257 ----------YMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQ 306

Query: 299 -SSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
             S + PN +T VS+L AC+ +  +E G R+
Sbjct: 307 DGSEMKPNWVTIVSVLPACAQSAALERGRRI 337



 Score = 42.4 bits (98), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGGFS 134
           R++H      G   N  V   L  +YA   +L +A   F+ + +  ++ ++W+ M+  ++
Sbjct: 335 RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 394

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-------RLIHDIVLKS 187
                +     F   +R G+Q D+ T   ++  C     I  G         IH +  + 
Sbjct: 395 SHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPR- 453

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
              ++ + C  +VD+  +   + +A++L  QMP +     W  ++ A
Sbjct: 454 ---VEHYAC--VVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAA 495


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 311/546 (56%), Gaps = 71/546 (13%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    +L  Y     +T+A ALF+ M +R+ VSW+ M+ G+++    I   + F   +
Sbjct: 173 DVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFE--V 230

Query: 151 RCGMQLDSYTLPFV--IRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
                  S+T   V  I+A    D +D+      H +            C A++  + + 
Sbjct: 231 MPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVA----------ACNAMMVGFGQH 280

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLL------------------------- 238
            ++D A+ +F++M  RD  TW+ MI     N+FL+                         
Sbjct: 281 GMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISIL 340

Query: 239 --------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
                                     DV   +A+I MY KCG++D A+ +F+    K+V+
Sbjct: 341 TVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVV 400

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
            W++MI  Y  HG G++AL +F  +  +R+ P+ IT++ +L ACS+TG V+EG  +F+SM
Sbjct: 401 MWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSM 460

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
             + ++R    HY+CMVDLLGRAG +DEAL LI +M VE D  +WGAL+GACR+HKN ++
Sbjct: 461 GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEI 520

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE+AAK LLE +P + G YVLLS++Y + GRW+D + +R  ++ R L K PG +WIE   
Sbjct: 521 AEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNK 580

Query: 453 KIHQFSVGDS-THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            +H F+ GD  +HP+   I  ML  L   L  +GY  D +F LHDVDEE K  +L  HSE
Sbjct: 581 MVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSE 640

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           + A+A+GL+  P G  IR+MKNLRVCGDCHS IK ++ IT R II+RDANRFHHF+ G C
Sbjct: 641 RQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLC 700

Query: 572 SCRDYW 577
           SCRDYW
Sbjct: 701 SCRDYW 706



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 25/199 (12%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFL-----LDVIL 242
           +L+  Y +  ++ DA +LF QMP R+ VT+TV++G          A K        DV+ 
Sbjct: 117 SLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVA 176

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            TA++  Y + G I  AR +FD M ++NV+SW+AMI+ Y  +G+   A  LF +M     
Sbjct: 177 RTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR-- 234

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             N +++ ++L      G VE+   LF++M D       V     M+   G+ G +D A 
Sbjct: 235 --NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDH-----PVAACNAMMVGFGQHGMVDAAK 287

Query: 363 KLIESMSVEKDEGLWGALL 381
            + E M   +D+G W A++
Sbjct: 288 AMFERMCA-RDDGTWSAMI 305



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 25/301 (8%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
             LL  Y  H  L DA  LF+ M ER+ V+++V++GGF          + F E     + 
Sbjct: 116 TSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVV 175

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
             +  L    +A R    I   R + D + K  +        A++  YA+   +  AR+L
Sbjct: 176 ARTAMLSGYCQAGR----ITEARALFDEMPKRNV----VSWTAMISGYAQNGKVILARKL 227

Query: 216 FDQMPTRDLVTWTVMI------GANKFLLD---------VILGTAVIDMYAKCGSIDSAR 260
           F+ MP R+ V+WT M+      G  +   D         V    A++  + + G +D+A+
Sbjct: 228 FEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAK 287

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+RM  ++  +WSAMI  Y  +    +AL  F  ML   + PN  +F+S+L  C+   
Sbjct: 288 AMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALA 347

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
             + G  L ++M    +   DV   + ++ +  + G LD+A K + +M   KD  +W ++
Sbjct: 348 TADYGRELHAAML-RCSFDTDVFAVSALITMYIKCGNLDKA-KRVFNMFEPKDVVMWNSM 405

Query: 381 L 381
           +
Sbjct: 406 I 406



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 33/232 (14%)

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           I+ AR  FD MP R   ++  +I                  Y +    D+A  +F RM  
Sbjct: 33  IEGARAAFDAMPLRTTASYNALIAG----------------YFRNHLPDAALGLFHRMPS 76

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +++ S++A+IA  G   +     D    + S  + P+ ++F SLL      GL+ + +RL
Sbjct: 77  RDLGSYNALIA--GLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRL 134

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLG--RAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           F  M       P+  H T  V L G   AGR++EA KL + M  +        L G C+ 
Sbjct: 135 FHQM-------PERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQA 187

Query: 387 HKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            +  +     A++L +  P+ N   +  + + YA  G+     K+ ++M  R
Sbjct: 188 GRITE-----ARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDR 234



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 56  RSVDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           R + P +  FIS L  C  +      R++HA ++     T++   + L+ +Y     L  
Sbjct: 327 RGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDK 386

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +FN  + +D V W+ M+ G+++          F +     M  D  T   V+ AC  
Sbjct: 387 AKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSY 446

Query: 171 RKDIVMGR-LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
              +  GR + + + + S + +     + +VD+  +  ++D+A  L + MP   D + W 
Sbjct: 447 TGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWG 506

Query: 229 VMIGA 233
            ++GA
Sbjct: 507 ALMGA 511



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 29/238 (12%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           AL+  Y +  + D A  LF +MP+RDL ++  +I         +               D
Sbjct: 53  ALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLRRHTL--------------PD 98

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           +A  +       +V+S+++++  Y  HG    A+ LF  M       N +T+  LL    
Sbjct: 99  AAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPER----NHVTYTVLLGGFL 154

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G V E  +LF  M D      DV   T M+    +AGR+ EA  L + M  +++   W
Sbjct: 155 DAGRVNEARKLFDEMPDK-----DVVARTAMLSGYCQAGRITEARALFDEMP-KRNVVSW 208

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            A++     +  V L    A+ L E  P +N   +  +   Y  AG  +D   + + M
Sbjct: 209 TAMISGYAQNGKVIL----ARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAM 262


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/542 (37%), Positives = 296/542 (54%), Gaps = 55/542 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N + +N L+  Y     L +A  +F+ M +R   +W+ M+ G  +          FRE  
Sbjct: 24  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 83

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G   D YTL  V       + + +G+ IH   +K GL++D  V ++L  MY +   + 
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 211 DARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGTA- 245
           D   +   MP R+LV W  +I                          NK     +L +  
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 246 -----------------------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                        +I MY+KCG +  A + F     ++ + WS+
Sbjct: 204 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 263

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           MI+AYG+HGQG +A++LF  M     +  N + F++LLYACSH+GL ++GL LF  M + 
Sbjct: 264 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           +  +P +KHYTC+VDLLGRAG LD+A  +I SM ++ D  +W  LL AC IHKN ++A+ 
Sbjct: 324 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQR 383

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
             K +L+  P +   YVLL+NV+A+A RW+DV+++R  M  + +KK  G +W E + ++H
Sbjct: 384 VFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 443

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           QF +GD +  +S+EIY  L  L+ +++L GY PDT   LHD+DEE K  +L  HSEKLA+
Sbjct: 444 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 503

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AF L+  PEG  IRI+KNLRVC DCH   K++S I  R I +RD +RFHHF  G CSC D
Sbjct: 504 AFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGD 563

Query: 576 YW 577
           YW
Sbjct: 564 YW 565


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/588 (35%), Positives = 318/588 (54%), Gaps = 87/588 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HAQIV  G      + N LL  Y     L DAH LF+ M +RD VSW+ ++  +++ 
Sbjct: 22  KKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQA 81

Query: 137 ADFINCFETFRE-FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                    F   F    +Q D +    +++AC     + +G+ +H   + S    D  V
Sbjct: 82  KLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVV 141

Query: 196 CAALVDMYAKCKVIDDARQLFDQM-------------------------------PTRDL 224
            ++LVDMYAKC +   AR +FD +                               P R+L
Sbjct: 142 KSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNL 201

Query: 225 VTWTVMI---------------------------------------------GANKFLLD 239
            +WT +I                                             G  K +  
Sbjct: 202 YSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHG 261

Query: 240 VILGT----------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           +++G+          A++DMYAKC  I +AR +F+RM  ++V+SW+++I     HG+ K+
Sbjct: 262 LVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKE 321

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           ALDL+  M+ + + PN +TFV L+YACSH GLV +G +LF +M +D+ + P ++ +TC +
Sbjct: 322 ALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFL 381

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLL R+G L+EA  LI++M  + DE  W ALL AC+ H N ++    A  LL      P 
Sbjct: 382 DLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPS 441

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            YVLLSNVYA AG+W+ ++++R LMT   +K+ PG++ I++  +   F  G++ HP  +E
Sbjct: 442 TYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDE 501

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           I+ +L  L  ++   GYIPDT++ LHD++E+ K   L+ HSE+ A+A+GL+    GT IR
Sbjct: 502 IFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIR 561

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLR+CGDCH+F+K  S+I  + IIVRDA R+HHF+ G CSC D+W
Sbjct: 562 IVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 59/223 (26%)

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           ++ C   +  +  + IH  ++KSGL+  Q +   L+D Y KC ++ DA  LFD+MP RD 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 225 VTWTVMIGA--------------------------------------------------N 234
           V+W  ++ A                                                   
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 235 KFLLDVILGTAVI-----DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           +F+L   +   V+     DMYAKCG    AR +FD +  K  +SW+AM++ Y   G   +
Sbjct: 129 RFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDE 188

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           A++LF   L + V  N  ++ +L+     +G   +G  +F  M
Sbjct: 189 AMELF---LRTPV-RNLYSWTALISGLVQSGYCIDGCYMFIEM 227


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/503 (39%), Positives = 291/503 (57%), Gaps = 49/503 (9%)

Query: 77  RQVHAQIVAGGT-LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R +HAQIV       + +V N LL +Y       +   +F  M +R+ VSW+ ++ GF+ 
Sbjct: 195 RAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAG 254

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                     FR   R GM     TL  ++  C     +  G+ IH  +LKS  + D   
Sbjct: 255 QGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNAD--- 311

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
                                                       V L  +++DMYAKCG 
Sbjct: 312 --------------------------------------------VPLLNSLMDMYAKCGE 327

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           I    ++FDRM  K++ SW+ M+A +  +GQ  +AL LF  M+   + PN ITFV+LL  
Sbjct: 328 IGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSG 387

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH+GL  EG RLFS++  DF V+P ++HY C+VD+LGR+G+ DEAL + E++ +     
Sbjct: 388 CSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGS 447

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +WG+LL +CR++ NV LAE+ A+ L E +P NPG+YV+LSN+YANAG W+DV ++R++M 
Sbjct: 448 IWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMA 507

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ-SEEIYRMLVTLSEKLELAGYIPDTNFEL 494
              +KK  G +WI++++KIH F  G S+  + S E  ++   LS  ++  GY+P+T   L
Sbjct: 508 LTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVL 567

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HD++EE+K   +  HSE+LA  F LI T  G  IRI KNLRVC DCHS++K VS +TRR+
Sbjct: 568 HDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRL 627

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I++RD NRFHHFE G+CSC+DYW
Sbjct: 628 IVLRDTNRFHHFENGSCSCKDYW 650



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIF--DRMRQKNVISWSAMIAAYGYHGQGKKAL 291
           N+ L +  L T +I +Y+ CG ++ AR +F  D  +      W AM   Y  +G   +AL
Sbjct: 101 NRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVAMAIGYSRNGFSHEAL 160

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            L+  MLS  V P    F   L ACS       G  + + +        D      ++ L
Sbjct: 161 LLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGL 220

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
               G  DE LK+ E M  +++   W  L+  
Sbjct: 221 YVEIGCFDEVLKVFEEMP-QRNVVSWNTLIAG 251


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/530 (39%), Positives = 311/530 (58%), Gaps = 49/530 (9%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P  +FT +   K  + S LS   + + +++HA I+  G   ++ V   LL +YA    ++
Sbjct: 172 PSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVS 231

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI--RCGMQLDSYTLPFVIRA 167
            A ++F  M +++ VSWS M+  ++K    +   E F+  +   C    +  T+  V++A
Sbjct: 232 YASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQA 291

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C     +  G+L+H  VL+ GLD                            +P       
Sbjct: 292 CASLAALEHGKLVHAYVLRRGLD--------------------------STLP------- 318

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                        +L T +I MY +CG I + + +FD M++++VISW+++I+ YG HG G
Sbjct: 319 -------------VLNT-LITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLG 364

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           KKA+ +F  M++  V P+ ITF+++L ACSH GLVEE   LF SM + + + P ++HY C
Sbjct: 365 KKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYAC 424

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MVD+LGRA RLDEA++LI++M  +    +WG+LLG+CRIH NV+LAE A+  L E +P+N
Sbjct: 425 MVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKN 484

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
            G+YVLLS++YA +  W DV ++R  +  R L+KIP  +WIEV+ KI+     +  +PQ 
Sbjct: 485 AGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQI 544

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           EE+   L+TL  +++  GY+P TN   +D+DEE K   +  HS KLA+AFGLI T +G  
Sbjct: 545 EELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEI 604

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IRI  NLR+C DCH+F+K VS  T R I++RD NRFH F+ G CSC DYW
Sbjct: 605 IRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 147/366 (40%), Gaps = 95/366 (25%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           T   +I +C ++  +  G  +H  ++ SGLD D ++   L++MY     +D A ++FD+ 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 220 PTRDLVTWTVM------------------------IGANKFLLDVILG------------ 243
             + +  W  +                        I +N+F    +L             
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 244 ----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                 T ++D+YA+ G +  A  +F  M  KN++SWSAMIA Y
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 282 GYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEG-------------- 325
             +    KAL+LF +M+  +   +PN IT VS+L AC+    +E G              
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDS 315

Query: 326 ----LRLFSSMWD------------DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM- 368
               L    +M+             D+  + DV  +  ++ + G  G   +A+++ E+M 
Sbjct: 316 TLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMI 375

Query: 369 --SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRW 424
              V      +  +L AC     V+ A++  +S+L +   +P   HY  + ++   A R 
Sbjct: 376 NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRL 435

Query: 425 QDVAKI 430
            +  ++
Sbjct: 436 DEAIEL 441


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/504 (39%), Positives = 296/504 (58%), Gaps = 51/504 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH+ I   G  +NL + N L+ +Y+    L  A  LF G+  +D +SW+ ++GG++ +
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH---DIVLKSGLDIDQ 193
             +      F+E +R G + +  T+  ++ AC     I +GR IH   D  LKS  +   
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
                                                           L T++IDMYAKC
Sbjct: 406 ------------------------------------------------LRTSLIDMYAKC 417

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G I++A ++F+ +  K++ SW+AMI  +  HG+   A D+F  M    + P+ ITFV LL
Sbjct: 418 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLL 477

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            ACS +G+++ G  +F +M  D+ + P ++HY CM+DLLG +G   EA ++I +M +E D
Sbjct: 478 SACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPD 537

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +W +LL AC+I  NV+L E  A++L++ +P+NPG YVLLSN+YA AGRW +VAKIR L
Sbjct: 538 GVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRAL 597

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           +  + +KK+PG + IE+++ +H+F +GD  HP++ EIY ML  +   LE AG++PDT+  
Sbjct: 598 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEV 657

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           L +++EE K G L  HSEKLAIAFGLI+T  GT + I+KNLRVC +CH   K +S I +R
Sbjct: 658 LQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKR 717

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            II RD  RFHHF  G CSC DYW
Sbjct: 718 EIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 201/401 (50%), Gaps = 36/401 (8%)

Query: 44  VPMQMGPDCQFTRSVDPKF-------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN 96
           VP    P      S DP +        +S L +C+ +  +R +HAQ++  G        +
Sbjct: 10  VPSSSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALS 69

Query: 97  KLLYIYALHK---ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           KLL +  +      L  A ++F  ++E + + W+ M  G +  +D ++  + +   I  G
Sbjct: 70  KLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLG 129

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           +  +SYT PF++++C   K    G+ IH  VLK G D+D FV  +L+ +Y +   ++DAR
Sbjct: 130 LLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDAR 189

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
           ++FD+ P RD+V++                TA+I  YA  G I+SA+++FD +  K+V+S
Sbjct: 190 KVFDRSPHRDVVSY----------------TALIKGYASRGYIESAQKLFDEIPVKDVVS 233

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI+ Y   G  K+AL+LF  M+ + + P+  T V+++ AC+ +G +E G R   S  
Sbjct: 234 WNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELG-RQVHSWI 292

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           DD     ++K    ++DL  + G L+ A  L E + + KD   W  L+G    H N+   
Sbjct: 293 DDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGL-LYKDVISWNTLIGG-YTHMNLYKE 350

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANA-------GRWQDV 427
            +     + R  + P    +LS + A A       GRW  V
Sbjct: 351 ALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHV 391


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 314/560 (56%), Gaps = 54/560 (9%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
           N+   ++VHA  +  G  +N+ + N L+ +YA    +      F  M E+D +SW+ ++ 
Sbjct: 364 NLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIA 423

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC------------------RDRKD 173
           G+++    +     FR+    GM +D   +  V+RAC                  RD  D
Sbjct: 424 GYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD 483

Query: 174 IVMGRLIHDI------------VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF----- 216
           I++   I ++              +S    D     +++       +  +A +LF     
Sbjct: 484 IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQ 543

Query: 217 -----DQMPTRDLVTWTVMIGANK-------------FLLDVILGTAVIDMYAKCGSIDS 258
                D +     ++ T  + + K             F L+  + ++++DMYA CG++++
Sbjct: 544 TNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVEN 603

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           +R++F  ++Q+++I W++MI A G HG G +A+ LF  M    V+P+ ITF++LLYACSH
Sbjct: 604 SRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSH 663

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           +GL+ EG R F  M   + + P  +HY CMVDLL R+  L+EA + + SM ++    +W 
Sbjct: 664 SGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWC 723

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALLGAC IH N +L E+AAK LL+   +N G Y L+SN++A  GRW DV ++R  M    
Sbjct: 724 ALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNG 783

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDV 497
           LKK PG +WIEV+NKIH F   D +HPQ+++IY  L   ++ L +  GYI  T F  H+V
Sbjct: 784 LKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNV 843

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
            EE K   LY HSE+LA+ +GL+ TP+GT IRI KNLR+C DCH+F K  S +++R ++V
Sbjct: 844 SEEEKTQMLYRHSERLALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVV 903

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RDANRFHHFE G CSC D+W
Sbjct: 904 RDANRFHHFERGLCSCGDFW 923



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 174/395 (44%), Gaps = 58/395 (14%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H   +      ++ VAN L+ +YA    + DA  +F  M  RD VSW+ ++ G  +   
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNEL 329

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           + +    FR+      + D  ++  +I A     +++ G+ +H   +++GLD +  +   
Sbjct: 330 YRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNT 389

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI-------------- 241
           L+DMYAKC  +      F+ M  +DL++WT +I     N+  L+ I              
Sbjct: 390 LIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVD 449

Query: 242 ------------------------------------LGTAVIDMYAKCGSIDSAREIFDR 265
                                               L  A++++Y + G  D AR  F+ 
Sbjct: 450 PMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFES 509

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           +R K+++SW++MI    ++G   +AL+LF  +  + + P+ I  +S L A ++   +++G
Sbjct: 510 IRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKG 569

Query: 326 LRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
             +   +    F +   +   + +VD+    G ++ + K+  S+  ++D  LW +++ A 
Sbjct: 570 KEIHGFLIRKGFFLEGPIA--SSLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINAN 626

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
            +H   + A    K + +     P H   L+ +YA
Sbjct: 627 GMHGCGNEAIALFKKMTDENVI-PDHITFLALLYA 660



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 175/427 (40%), Gaps = 69/427 (16%)

Query: 57  SVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           ++D   F S L +C  + + R   ++H   V  G    + V N L+ +Y     L  A  
Sbjct: 142 AIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARV 201

Query: 114 LFNG--MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
           LF+G  M++ D+VSW+ ++         +     FR     G+  ++YT    ++   D 
Sbjct: 202 LFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDP 261

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             + +G  IH   LKS    D +V  AL+ MYAKC  ++DA ++F  M  RD V+W  ++
Sbjct: 262 SFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLL 321

Query: 232 GA---NKFLLDVI----------------------------------------------- 241
                N+   D +                                               
Sbjct: 322 SGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLD 381

Query: 242 ----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
               +G  +IDMYAKC  +      F+ M +K++ISW+ +IA Y  +    +A++LF  +
Sbjct: 382 SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKV 441

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR---PDVKHYTCMVDLLGR 354
               +  + +   S+L ACS  GL     R F      +  +    D+     +V++ G 
Sbjct: 442 QVKGMDVDPMMIGSVLRACS--GLKS---RNFIREIHGYVFKRDLADIMLQNAIVNVYGE 496

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            G  D A +  ES+   KD   W +++  C +H  + +  +     L++    P    ++
Sbjct: 497 VGHRDYARRAFESIR-SKDIVSWTSMITCC-VHNGLPVEALELFYSLKQTNIQPDSIAII 554

Query: 415 SNVYANA 421
           S + A A
Sbjct: 555 SALSATA 561



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 135/311 (43%), Gaps = 57/311 (18%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q +Q+HA+++   +  +  +A KLL++Y    +L DA  +F+ M ER   +W+ M+G F 
Sbjct: 64  QGQQLHARLLK--SHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFV 121

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               ++   E ++E    G+ +D+ T P V++AC    +  +G  IH + +K G     F
Sbjct: 122 SSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVF 181

Query: 195 VCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           VC AL+ MY KC  +  AR LFD   M   D V+W  +I                     
Sbjct: 182 VCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSII--------------------- 220

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
                                     +A+   G+  +AL LF  M    V  N  TFV+ 
Sbjct: 221 --------------------------SAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAA 254

Query: 313 LYACSHTGLVEEGLRLFSSMW--DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           L        V+ G+ +  +    + FA   DV     ++ +  + GR+++A ++  SM +
Sbjct: 255 LQGVEDPSFVKLGMGIHGAALKSNHFA---DVYVANALIAMYAKCGRMEDAERVFASM-L 310

Query: 371 EKDEGLWGALL 381
            +D   W  LL
Sbjct: 311 CRDYVSWNTLL 321



 Score = 46.6 bits (109), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    IS+L +  N+  ++   ++H  ++  G      +A+ L+ +YA    + ++  +F
Sbjct: 549 DSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMF 608

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + +K+RD + W+ M+               F++     +  D  T   ++ AC     +V
Sbjct: 609 HSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMV 668

Query: 176 MGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIG 232
            G+   +I +K G  ++ +    A +VD+ ++   +++A Q    MP +     W  ++G
Sbjct: 669 EGKRFFEI-MKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLG 727

Query: 233 A 233
           A
Sbjct: 728 A 728


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/607 (36%), Positives = 326/607 (53%), Gaps = 83/607 (13%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQ----IRQVHAQIVAGGTLTNLIVANKLLYIYA-LHKA 107
            F  S D   F  SLL    +F+     + +HA ++  G   +L  AN L+ +Y+  H  
Sbjct: 69  SFGISPDRHLF-PSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPH 127

Query: 108 LTDAH---------------------ALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           L+  H                      LF+ M  RD VSW+ ++ G ++   +       
Sbjct: 128 LSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMV 187

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           +E  +  ++ DS+TL  ++    +  ++  G+ IH   ++ G D D F+ ++L+DMYAKC
Sbjct: 188 KEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKC 247

Query: 207 KVIDDARQLFDQMPTRDL-----------------------------------VTWTVMI 231
             ++ +   F  +  RD                                    V+++ +I
Sbjct: 248 TQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVI 307

Query: 232 GANKFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDR--MRQKN 270
            A   L  + LG                   ++++DMYAKCG+I  AR IF++  M  ++
Sbjct: 308 PACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRD 367

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           ++SW+A+I     HG    A+ LF  ML   V P  + F+++L ACSH GLV+EG + F+
Sbjct: 368 MVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFN 427

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  DF V P ++HY  + DLLGRAGRL+EA   I +M  E    +W  LL ACR HKN+
Sbjct: 428 SMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNI 487

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +LAE     +L   P N G +V++SN+Y+ A RW+D AK+R  M +  LKK P  +WIEV
Sbjct: 488 ELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEV 547

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            NK+H F  GD +HP  ++I   L  L E++E  GY+ DTN  LHDVDEE K   L +HS
Sbjct: 548 GNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHS 607

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LAIAFG+I+T  GT IR++KN+RVC DCH+ IK ++ I  R IIVRD +RFHHF+ G+
Sbjct: 608 ERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGS 667

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 668 CSCGDYW 674



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 141/346 (40%), Gaps = 86/346 (24%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           S++W  ++  ++      +   +F      G+  D +  P ++RA    K   + + +H 
Sbjct: 41  SLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKV----------------------IDDARQLFDQMP 220
            V++ G   D +   AL++MY+K                         ID  R+LFD+MP
Sbjct: 101 AVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMP 160

Query: 221 TRDLVTWTVMIGAN------------------------KFLLDVIL-------------- 242
            RD+V+W  +I  N                         F L  IL              
Sbjct: 161 VRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKE 220

Query: 243 ----------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                           G+++IDMYAKC  ++ +   F  +  ++ ISW+++IA    +G+
Sbjct: 221 IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGR 280

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM----WDDFAVRPDV 342
             + L  F  ML  +V P +++F S++ AC+H   +  G +L + +    +DD       
Sbjct: 281 FDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIA-- 338

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSV-EKDEGLWGALLGACRIH 387
              + ++D+  + G +  A  +   + + ++D   W A++  C +H
Sbjct: 339 ---SSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 303/529 (57%), Gaps = 50/529 (9%)

Query: 52  CQFTR-SVDPKFFI-SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           CQ +R  V P  F  S++L+ +    + Q+HAQI+         VA  LL  Y     + 
Sbjct: 397 CQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVV 456

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           ++  +F  +  +D V+WS M+ G ++  D     E F + ++ G++ + YT   VI AC 
Sbjct: 457 ESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516

Query: 170 DRKDIV-MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
                V  G+ IH   +KSG               A C                      
Sbjct: 517 SSAATVEHGKQIHATAVKSG------------KSNALC---------------------- 542

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                        + +A++ MY+K G+I+SA ++F R  +++++SW++MI  YG HG  K
Sbjct: 543 -------------VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAK 589

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           KAL++F +M +  +  + +TF+ +L AC+H GLVEEG + F+ M  D+ +   ++HY+CM
Sbjct: 590 KALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCM 649

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDL  RAG  D+A+ +I  M       +W  LL ACR+H+N++L ++AA+ L+  QP + 
Sbjct: 650 VDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDA 709

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             YVLLSN++A AG W++ A +R LM  R++KK  G +WIE++N+I  F  GD +HP S+
Sbjct: 710 VGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSD 769

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
            +Y  L  LS KL+  GY PDTN+  HDV+EE K   L  HSE+LAIA+GLIA P G  I
Sbjct: 770 LVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPI 829

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +I KNLR+CGDCH+ I+ +S I  R +IVRD+NRFHHF+GG CSC  YW
Sbjct: 830 QIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 62/372 (16%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVHA IV  G      V N L+ +Y   + + DA A+F+ M  RDSV+W++M+GG++ + 
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            ++  F+ F      G++L        ++ C  ++++   + +H  V+K+G +  Q +  
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 198 ALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA----------------------- 233
           AL+  Y+KC  +D+A +LF       ++VTWT MIG                        
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVR 405

Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
            N F    +L                           TA++D Y K G++  +  +F  +
Sbjct: 406 PNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSI 465

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-GLVEEG 325
             K++++WSAM+         +KA+++F  ++   V PN  TF S++ ACS +   VE G
Sbjct: 466 PAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHG 525

Query: 326 LRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            ++ ++     AV+    +  C    ++ +  + G ++ A K+      E+D   W +++
Sbjct: 526 KQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMI 579

Query: 382 GACRIHKNVDLA 393
                H +   A
Sbjct: 580 TGYGQHGDAKKA 591



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 164/398 (41%), Gaps = 62/398 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH Q +  G L ++ V   L+ +Y   +   D   +F+ M  ++ VSW+ ++ G+++ 
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                      +    G+  + +T   V+ A  D   I  G  +H +++K+G +   FVC
Sbjct: 184 GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC 243

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---ANKFLLD------------VI 241
            AL+ MY K +++ DA  +FD M  RD VTW +MIG   A  F L+            V 
Sbjct: 244 NALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVK 303

Query: 242 LGTAVIDMYAK---------------CGSIDSAREIFDRMRQKNVISWS----------- 275
           L   V     K               CG + +  E    +R   ++++S           
Sbjct: 304 LSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 276 --------------AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
                         AMI  +  +   +KA+DLF  M    V PN  T+ ++L     + L
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL 423

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +   ++  + ++     P V   T ++D   + G + E+ ++  S+   KD   W A+L
Sbjct: 424 SQLHAQIIKAYYEKV---PSVA--TALLDAYVKTGNVVESARVFYSIPA-KDIVAWSAML 477

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
                 ++ + A M     L ++   P  Y   S + A
Sbjct: 478 TGLAQTRDSEKA-MEVFIQLVKEGVKPNEYTFSSVINA 514



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 142/367 (38%), Gaps = 78/367 (21%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           AH LF+    +D   ++ ++  FS+          F++    G+ +D  TL   ++ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D V+GR +H   LKSG   D  V  +LVDMY K +  +D R +FD+M  +++V+WT +
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 231 ------------------------IGANKFLLDVILG----------------------- 243
                                   +  N F    +LG                       
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 244 -------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                   A+I MY K   +  A  +FD M  ++ ++W+ MI  Y   G   +   +F  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 297 MLSSRVLPNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           M  + V  +R  F + L  CS           H G+V+ G         +FA   D++  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY--------EFA--QDIR-- 344

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           T ++    +   +DEA KL        +   W A++G   +  N +   +     + R+ 
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGF-VQNNNNEKAVDLFCQMSREG 403

Query: 406 QNPGHYV 412
             P H+ 
Sbjct: 404 VRPNHFT 410


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/538 (39%), Positives = 298/538 (55%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   L+ +++  + +  A  LF  +++ D VS++ ++ GFS   +     + FRE +  G
Sbjct: 241 VLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSG 300

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
            ++ S T+  +I        + +   I    +KSG  +   V  AL  +Y++   ID AR
Sbjct: 301 QRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLAR 360

Query: 214 QLFD-------------------------------QMPTRDL----VTWTVMIGANKFL- 237
           QLFD                               +M T +     VT T ++ A   L 
Sbjct: 361 QLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420

Query: 238 ------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                              ++ + TA+IDMYAKCG+I  A ++FD   +KN ++W+ MI 
Sbjct: 421 ALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIF 480

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            YG HG G +AL LF  ML     P+ +TF+S+LYACSH GLV EG  +F +M + + + 
Sbjct: 481 GYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIE 540

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P  +HY CMVD+LGRAG+L++AL+ I  M VE    +WG LLGAC IHK+ +LA +A++ 
Sbjct: 541 PLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASER 600

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           L E  P N G+YVLLSN+Y+    +   A +R+ + +R L K PG T IEV    H F  
Sbjct: 601 LFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVC 660

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           GD +H Q+  IY  L  L+ K+   GY  +T   LHDV+EE K      HSEKLAIAFGL
Sbjct: 661 GDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGL 720

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I T  GT IRI+KNLRVC DCH+  K +S IT RVI+VRDANRFHHF+ G CSC DYW
Sbjct: 721 ITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 181/395 (45%), Gaps = 57/395 (14%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA  V  G  +NL VA+ L+ +Y     +  A  +F+ M +RD+V W+ M+ G  +   
Sbjct: 125 LHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCC 184

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           + +  + F++ +  G++LDS T+  V+ A  + +++ +G  I  + LK G   D +V   
Sbjct: 185 YDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTG 244

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVIL------ 242
           L+ +++KC+ +D AR LF  +   DLV++  +I           A K+  ++++      
Sbjct: 245 LISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVS 304

Query: 243 --------------------------------------GTAVIDMYAKCGSIDSAREIFD 264
                                                  TA+  +Y++   ID AR++FD
Sbjct: 305 SSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFD 364

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
              +K V +W+AMI+ Y   G  + A+ LF  M+++   PN +T  S+L AC+  G +  
Sbjct: 365 ESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSF 424

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G +    +     +  ++   T ++D+  + G + EA +L + ++ EK+   W  ++   
Sbjct: 425 G-KSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMIFGY 482

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
            +H   D A      +L    Q P     LS +YA
Sbjct: 483 GLHGYGDEALKLFNEMLHLGFQ-PSSVTFLSVLYA 516



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 148/381 (38%), Gaps = 72/381 (18%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            + + HAQ++  G   +L    KL        A   A ALF  + + D   ++V++ GFS
Sbjct: 23  HLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFS 82

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              D  +            +  D++T  F I A  D     +G  +H   +  G D + F
Sbjct: 83  FSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDN---LGMCLHAHAVVDGFDSNLF 139

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---------------------- 232
           V +ALVD+Y K   +  AR++FD+MP RD V W  MI                       
Sbjct: 140 VASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQG 199

Query: 233 -------------ANKFLLDVILGTAVIDMYAKCG------------SIDSAREIFDRMR 267
                        A   + +V +G  +  +  K G            S+ S  E  D  R
Sbjct: 200 VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTAR 259

Query: 268 -------QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS--- 317
                  + +++S++A+I+ +  +G+ + A+  F  +L S    +  T V L+   S   
Sbjct: 260 LLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFG 319

Query: 318 --HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
             H     +G  + S       ++P V   T +  +  R   +D A +L +  S EK   
Sbjct: 320 HLHLACCIQGFCVKSGT----ILQPSVS--TALTTIYSRLNEIDLARQLFDESS-EKTVA 372

Query: 376 LWGALLGACRIHKNVDLAEMA 396
            W A++     +    L EMA
Sbjct: 373 AWNAMISG---YAQSGLTEMA 390



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 5/180 (2%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +P    S L +C  +  +   + VH  I +     N+ V+  L+ +YA    +++A  LF
Sbjct: 405 NPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLF 464

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           +   E+++V+W+ M+ G+          + F E +  G Q  S T   V+ AC     + 
Sbjct: 465 DLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVR 524

Query: 176 MG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
            G  + H +V K  ++      A +VD+  +   ++ A +   +MP       W  ++GA
Sbjct: 525 EGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGA 584


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/532 (39%), Positives = 296/532 (55%), Gaps = 54/532 (10%)

Query: 53  QFTRSVDPKFFISSLLSCRNIF---QIRQ----VHAQIVAGGTLTNLIVANKLLYIYALH 105
           Q  RS D K    +L S  N F   ++ Q    VH  I+  G     +V N L+ +YA  
Sbjct: 30  QKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQ 89

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             L  A  +F+ M ++D VSW+ +V G+S    +    + F +    G+  D   +  V+
Sbjct: 90  GKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVL 149

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
            AC +   +  G+ IH  ++KSGL+    V  +LV MYAKC  I DA + FD MPTRD++
Sbjct: 150 SACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVI 209

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           +WT                                               A+I  Y  +G
Sbjct: 210 SWT-----------------------------------------------ALIVGYAQNG 222

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           +GK +L  +  M+++   P+ ITF+ LL+ACSH GL+  G   F +M   + ++P  +HY
Sbjct: 223 RGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHY 282

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            CM+DLLGR+G+L EA  L+  M V  D  +W ALL ACR+HK ++L EMAAK+L E +P
Sbjct: 283 ACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEP 342

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N   YV+LSN+Y+ AG+W+D A+IR LM  R + K PG++WIE  +K+  F   D  HP
Sbjct: 343 MNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHP 402

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
              EIY  +  +   ++ AGY+PD +F LHD D+EVK   L  HSEKLA+AFGL+  P+G
Sbjct: 403 LRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQG 462

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             IRI KNLRVCGDCH+ +K+ S +  R II+RD+N FHHF  G CSC DYW
Sbjct: 463 APIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/503 (41%), Positives = 300/503 (59%), Gaps = 52/503 (10%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +HA +   G      VAN ++  YA      L  A  LF+ M +RD VSW+ M+  +++ 
Sbjct: 214 IHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQN 272

Query: 137 ADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                    + + +  G  ++ ++ TL  V+ AC     I  G+ IH+ V++ GL+ + +
Sbjct: 273 GLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVY 332

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V                                               GT+V+DMY+KCG
Sbjct: 333 V-----------------------------------------------GTSVVDMYSKCG 345

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ++ A + F +++ KN++SWSAMIA YG HG G++AL +F  M  S + PN ITF+++L 
Sbjct: 346 KVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLA 405

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH GL+ EG   +++M  +F + P V+HY CMVDLLGRAG LDEA  LI+ M V+ D 
Sbjct: 406 ACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDA 465

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            LWGALL ACRI+KNV+LA++ A+ L E    N G+YVLLSN+YA AG W++V ++R L+
Sbjct: 466 ALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLV 525

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             R ++K PG++ +E++ K H F VGD +HPQ +EIY  L  L E++  AGY+P+T   L
Sbjct: 526 KTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVL 585

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HD+D E +   L  HSEKLA+AF L+ + +G+ I ++KNLRVC DCH+ IK ++ +T R 
Sbjct: 586 HDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGRE 645

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           II+RD  RFHHF+ G CSC DYW
Sbjct: 646 IIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 93/176 (52%), Gaps = 10/176 (5%)

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTA--VIDMYAKCGSID--SAREIFDRMRQKNVIS 273
           ++P R  +T  +    +K  LD   G A  +ID YAK G  D  +AR++FD M  ++V+S
Sbjct: 204 RVPDRG-ITGGIHALVSKIGLDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVS 261

Query: 274 WSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           W+ MIA Y  +G   +AL L+  ML     V  N +T  ++L AC+H G ++ G R+ + 
Sbjct: 262 WNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQ 321

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           +     +  +V   T +VD+  + G+++ A K  + +   K+   W A++    +H
Sbjct: 322 VV-RMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIK-GKNILSWSAMIAGYGMH 375



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 7/182 (3%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           LL+C +   I   +++H Q+V  G   N+ V   ++ +Y+    +  A   F  +K ++ 
Sbjct: 303 LLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNI 362

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +SWS M+ G+            F +  + G++ +  T   V+ AC     +  GR  ++ 
Sbjct: 363 LSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYN- 421

Query: 184 VLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDV 240
            +K+   I+  V     +VD+  +   +D+A  L  +M  + D   W  ++ A +   +V
Sbjct: 422 TMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIYKNV 481

Query: 241 IL 242
            L
Sbjct: 482 EL 483


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 315/559 (56%), Gaps = 63/559 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS-- 134
           RQVH  +VA  T +N+ V N LL  Y+    L +   LF+ M ERD+VS++VM+ G++  
Sbjct: 261 RQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWN 319

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           + A  +     FRE     +  D   LP+  ++        I +G+ IH  ++  GL  +
Sbjct: 320 RCASIV--LRLFREMQ--SLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSE 375

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV----------------------- 229
             V  AL+DMY+KC ++D A+  F     +  V+WT                        
Sbjct: 376 DLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRR 435

Query: 230 ---------------------MIGANKFLLDVIL----------GTAVIDMYAKCGSIDS 258
                                MIG  + L   ++          G+A++DMY KCG +D 
Sbjct: 436 AGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDE 495

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A + FD M ++N ISW+A+I+AY ++GQ K A+ +F  ML     P+ +TF+S+L ACSH
Sbjct: 496 ALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSH 555

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GL EE ++ F  M  ++ + P  +HY+C++D LGR GR D+  +++  M  E D  +W 
Sbjct: 556 NGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWS 615

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ++L +CR H N DLA +AA+ L      +   YV+LSN++A AG+W+D A ++ +M  R 
Sbjct: 616 SILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRG 675

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
           L+K  G++W+EV++K++ FS  D T+P   EI   L  L ++++  GY PDT+  L  VD
Sbjct: 676 LRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVD 735

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           +++K+ +L  HSE+LAIAF LI TP GT IR+MKNL  C DCHS IK +S I  R IIVR
Sbjct: 736 DDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVR 795

Query: 559 DANRFHHFEGGACSCRDYW 577
           D++RFHHF+ G CSC DYW
Sbjct: 796 DSSRFHHFKDGFCSCGDYW 814



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 157/394 (39%), Gaps = 84/394 (21%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
              + SL+S   + Q R +  Q+       N    N++L  Y+    L+ AH LF     
Sbjct: 38  NLLLHSLISSGRLAQARALFDQMP---HRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPP 94

Query: 121 --RDSVSWSVMVGGFSKV--ADFINCFETFREFIRCGMQLDSYTLPFVIR---ACRDRKD 173
             RD+V+W+VM+G F+    A   +    FR+ +R G+  D  T+  V+    A      
Sbjct: 95  HLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAA 154

Query: 174 IVMGRLIHDIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-- 230
            ++   +H   LK GL   +  VC  L+D Y K  ++  AR++F +MP RD VT+  M  
Sbjct: 155 AIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMM 214

Query: 231 ----------------------IGANKFLLDVILGTA----------------------- 245
                                 + A +F    +L  A                       
Sbjct: 215 GCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSSN 274

Query: 246 ------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                 ++D Y+KC  +D  +++F  M +++ +S++ MIA Y ++      L LF  M S
Sbjct: 275 VFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQS 334

Query: 300 SRVLPNRITFVSLLY---ACSHTGL---VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
                  + + SLL    +  H G+   +   L L     +D            ++D+  
Sbjct: 335 LSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVG-------NALIDMYS 387

Query: 354 RAGRLDEALKLIESMSVEKDEGL---WGALLGAC 384
           + G LD A    ++  + K++     W A++  C
Sbjct: 388 KCGMLDAA----KTNFINKNDKTGVSWTAMITGC 417


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/555 (37%), Positives = 319/555 (57%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           +Q+H+ ++  G +++  V+  L+ +Y    + +++  A  +F  M   + +SW+ ++ G+
Sbjct: 269 QQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGY 328

Query: 134 SKVA-DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            +      N  E   E +   ++ +  T   +++AC +  D   GR IH  V+K+ +   
Sbjct: 329 VQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNV 388

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT--------------WTVMI-----GA 233
             V  ALV MYA+   +++AR+ FDQ+  R+L++              W+  I     G 
Sbjct: 389 NVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGETGRSNASWSSQIESMDVGV 448

Query: 234 NKFLLDVILGTA------------------------------VIDMYAKCGSIDSAREIF 263
           + F    +L  A                              ++ MY++CG +D A   F
Sbjct: 449 STFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAF 508

Query: 264 DRMRQK-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           D M    NVISW+++I+A   HG  ++AL LF  M+ S V PN +T++++L ACSH GLV
Sbjct: 509 DEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLV 568

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG   F SM  D  + P ++HY CMVDLL R+G + EAL+ I  M  + D  +W  LLG
Sbjct: 569 KEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLG 628

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR ++N+++ E+AA+ +++ +PQ+P  YVLLSN+YA+ G W +VA+IR LM  R L K 
Sbjct: 629 ACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKE 688

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G +W+ V N IH+F  GD++HP+++EIY  L  L  +++  GY+PDT+  LHD+ +++K
Sbjct: 689 TGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLK 748

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSEK+A+AFGLI T     IRI KNLRVC DCHS IK++S  T R II+RD+NR
Sbjct: 749 EQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNR 808

Query: 563 FHHFEGGACSCRDYW 577
           FH  + G CSC +YW
Sbjct: 809 FHRMKDGKCSCGEYW 823



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 129/282 (45%), Gaps = 50/282 (17%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           T++ V   L+ ++A +  L  A  +FNG+ ER  V W++M+  + +        E F   
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM 240

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV- 208
           +  G + D YT+  ++ AC ++    +G+ +H +VL+ GL  D  V   LVDMY K ++ 
Sbjct: 241 LEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQME 300

Query: 209 --IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
             ++ AR++F +MPT ++++W                TA+I  Y +CG            
Sbjct: 301 QSMECARKVFKRMPTHNVMSW----------------TALISGYVQCG------------ 332

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
                             GQ   A++L   ML+  + PN +T+ SLL AC++    + G 
Sbjct: 333 ------------------GQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGR 374

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           ++ + +        +V     +V +   +G ++EA K  + +
Sbjct: 375 QIHARVMKTSIGNVNVVG-NALVSMYAESGCMEEARKAFDQL 415



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 58/213 (27%)

Query: 176 MGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVM--- 230
           +GR +H  +L +  LD D  V  +L+ MY+KC  +  AR++FD M   RDLV+WT M   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 231 ---------------------IGANKFLL------------------------------- 238
                                +  N F L                               
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWG 180

Query: 239 -DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            DV +G A+IDM+A+ G + +AR++F+ + ++ V+ W+ MI  Y   G   KA++LF  M
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM 240

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           L     P+  T  S++ AC+  G    G +L S
Sbjct: 241 LEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHS 273



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%)

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGK 288
           ++G      D ++  +++ MY+KCG + +AR +FD MR  ++++SW+AM      +G  +
Sbjct: 69  LLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQ 128

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYAC------SHTGLVEEGLRLFSSMWDDFAVRPDV 342
           +AL L   ML S + PN  T  +  +AC        +G    G  + +  W       DV
Sbjct: 129 EALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWG-----TDV 183

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
                ++D+  R G L  A K+   + VE+   +W
Sbjct: 184 SVGCALIDMFARNGDLVAARKVFNGL-VERTVVVW 217



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 107/245 (43%), Gaps = 34/245 (13%)

Query: 62  FFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F  +SLLS      +    +Q+HA  +  G  ++  ++N L+ +Y+    L DA   F+ 
Sbjct: 451 FTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDE 510

Query: 118 MKE-RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           M++  + +SW+ ++   +K          F + I  G++ +  T   V+ AC     +  
Sbjct: 511 MEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKE 570

Query: 177 GRLIHDIVLKSGLDI---DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIG 232
           G+     + K    I   + + C  +VD+ A+  ++ +A +  ++MP + D + W  ++G
Sbjct: 571 GKEYFRSMQKDHRLIPRMEHYAC--MVDLLARSGLVQEALEFINEMPCKADALVWKTLLG 628

Query: 233 ANKFLLDVILGTA----VID--------------MYAKCGSIDSAREIFDRMRQKNV--- 271
           A +   ++ +G      VID              +YA  G  D    I   MR +N+   
Sbjct: 629 ACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKE 688

Query: 272 --ISW 274
             +SW
Sbjct: 689 TGLSW 693


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 325/606 (53%), Gaps = 91/606 (15%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA--LFNGMKE 120
            IS L  C N+ QI+Q+H  ++  G   +  +  KL+          D +A  +   ++ 
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R+   W+ ++ G++    F      +    +  +   S+T   +++AC   KD+ +GR  
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM--------------------- 219
           H    +       +V   ++DMY KC+ ID AR++FD+M                     
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231

Query: 220 ----------PTRDLVTWTVM--------------------------------------- 230
                     PT+D+V WT M                                       
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 291

Query: 231 --IGANKFLL---------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
             +GA+K+                  V++G+A+IDMY+KCG+++ A  +F  M  KNV +
Sbjct: 292 AQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFT 351

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           +S+MI     HG+ ++AL LF  M++ + + PN +TFV  L ACSH+GLV++G ++F SM
Sbjct: 352 YSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSM 411

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
           +  F V+P   HYTCMVDLLGR GRL EAL+LI++MSVE   G+WGALLGACRIH N ++
Sbjct: 412 YQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEI 471

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE+AA+ L E +P   G+Y+LLSNVYA+AG W  V ++R L+  + LKK P  +W+  +N
Sbjct: 472 AEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKN 531

Query: 453 -KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            ++H+F  G+  HP S +I   L  L E+L + GY PD +   +DV +  K   L  H+E
Sbjct: 532 GQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTE 591

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLA+AF L+ T   + I IMKNLR+C DCH F++  S +T +VII+RD  RFHHF  G C
Sbjct: 592 KLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDC 651

Query: 572 SCRDYW 577
           SC D+W
Sbjct: 652 SCGDFW 657


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/508 (42%), Positives = 296/508 (58%), Gaps = 28/508 (5%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VH+ I       +L ++N +L +Y    ++ DA  LF+ M E+D VSW+ M+ G++K+
Sbjct: 257 RWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKI 316

Query: 137 ADFINCFETF-----REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            ++      F     ++       + +Y        C   K+ +   L H++ L      
Sbjct: 317 GEYDAAQGIFDAMPNQDIAAWNALISAY------EQCGKPKEAL--ELFHELQLSKTAKP 368

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAVIDMY 250
           D+     LV   + C           Q+   DL  W  V I      L+  L T++IDMY
Sbjct: 369 DE---VTLVSTLSACA----------QLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMY 415

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            KCG +  A  +F  + +K+V  WSAMIA    HG GK A+ LF  M   +V PN +TF 
Sbjct: 416 CKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFT 475

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           ++L ACSH GLVEEG   F+ M   + V P VKHY CMVD+LGRAG L+EA++LIE M +
Sbjct: 476 NILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPM 535

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
                +WGALLGAC IH+NV LAE A   L+E +P N G YVLLSN+YA AG+W  V+ +
Sbjct: 536 APAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGL 595

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R LM    LKK PG + IEV+  +H+F VGD++HP +++IY  L  +  +LE  GY+P+ 
Sbjct: 596 RKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNK 655

Query: 491 NFELHDVDEE-VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
           +  L  V+EE VK   L+ HSEKLAIAFGLI+T +   IRI+KNLRVCGDCHS  K VS 
Sbjct: 656 SHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSK 715

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  R I++RD  RFHHF  G CSC DYW
Sbjct: 716 LYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 169/343 (49%), Gaps = 21/343 (6%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           +   PD  F       F I +      +F  +  H  ++     +++ + N L++ YA  
Sbjct: 127 LHQSPD--FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC 184

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             L   + +F  +  RD VSW+ M+  F +        E F+E     ++ +  T+  V+
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
            AC  + D   GR +H  + ++ +     +  A++DMY KC  ++DA++LFD+MP +D+V
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIV 304

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           +WT M+                  YAK G  D+A+ IFD M  +++ +W+A+I+AY   G
Sbjct: 305 SWTTMLVG----------------YAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCG 348

Query: 286 QGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           + K+AL+LF  + LS    P+ +T VS L AC+  G ++ G  +   +     ++ +   
Sbjct: 349 KPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ-GMKLNCHL 407

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            T ++D+  + G L +AL +  S+   KD  +W A++    +H
Sbjct: 408 TTSLIDMYCKCGDLQKALMVFHSVE-RKDVFVWSAMIAGLAMH 449



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 45/335 (13%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKER 121
           +S +  C    Q++Q+HAQ++  G   +   A++L+   AL    +L  A  +F+ +   
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ----LDSYTLPFVIRACRDRKDIVMG 177
           +  +W+ ++  ++  +   N  ++   F+R   Q     D +T PF+I+A  + +++  G
Sbjct: 99  NLYTWNTLIRAYASSS---NPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTG 155

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
           +  H +V+K  L  D F+  +L+  YAKC  +    ++F  +P RD+V+W  MI A    
Sbjct: 156 KAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITA---- 211

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQGKKALDL 293
                       + + G  + A E+F  M  +NV    I+   +++A       KK+   
Sbjct: 212 ------------FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSAC-----AKKSDFE 254

Query: 294 FPMMLSSRVLPNRITFV-----SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           F   + S +  NRI        ++L   +  G VE+  RLF  M +      D+  +T M
Sbjct: 255 FGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEK-----DIVSWTTM 309

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +    + G  D A  + ++M   +D   W AL+ A
Sbjct: 310 LVGYAKIGEYDAAQGIFDAMP-NQDIAAWNALISA 343


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 322/606 (53%), Gaps = 91/606 (15%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA--LFNGMKE 120
            IS L  C N+ QI+Q+H  ++  G   +  +  KL+          D +   +   ++ 
Sbjct: 53  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQF 112

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R+   W+ ++ G++    F      +    +  +   S+T   +++AC    D+ +GR  
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM--------------------- 219
           H    +       +V   ++DMY KC  I  AR++FD+M                     
Sbjct: 173 HAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNM 232

Query: 220 ----------PTRDLVTWTVM--------------------------------------- 230
                     PT+D+V WT M                                       
Sbjct: 233 ESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 292

Query: 231 --IGANKFLL---------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
             +GA+K+                  V++G+A+IDMY+KCG+++ A  +F  M  KNV S
Sbjct: 293 AQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFS 352

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           +S+MI     HG+ ++ALDLF  M++   + PN +TFV  L ACSH+GLV++G ++F+SM
Sbjct: 353 YSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASM 412

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
           +  F V P   HYTCMVDLLGRAGRL EAL+LI++MSVE   G+WGALLGACRIH N D+
Sbjct: 413 YQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDI 472

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
           AE+AA+ L E +P   G+Y+LLSNVY++AG W  V  +R L+  + LKK P  +W+  +N
Sbjct: 473 AEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKN 532

Query: 453 -KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            ++H+F  G+  HP S++I   L  L E+L   GY PD +   +DV +  K   L  H+E
Sbjct: 533 GQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTE 592

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLA+AF L+ T     I+IMKNLR+C DCH F++  S +T RVII+RD  RFHHF  GAC
Sbjct: 593 KLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGAC 652

Query: 572 SCRDYW 577
           SC D+W
Sbjct: 653 SCGDFW 658


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 313/571 (54%), Gaps = 59/571 (10%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F  +L +C  +  +     V  +  A G   ++ V + LL++Y+   A+ +A  +F+GM 
Sbjct: 110 FTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMP 169

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D V+WS MV GF      +     +      G+  D   +  VI+AC    +  +G  
Sbjct: 170 RKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGAS 229

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H  +L+  + +D     +LV MYAK   +D A Q+F  MP R+ VTW+ +I        
Sbjct: 230 VHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGR 289

Query: 234 ------------------------------------------NKFLL-----DVILGTAV 246
                                                     + F+L       ILGTAV
Sbjct: 290 AVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQCILGTAV 349

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +DMY+KCGS++SAR++F+++  ++++ W+A+IA  G HG G  AL LF  +  + + P+ 
Sbjct: 350 LDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDH 409

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            TF SLL A SH+GLVEEG   F  M  +F + P  KHY C+VDLL R+G ++EA  ++ 
Sbjct: 410 ATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLA 469

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           SM  E    +W  LL  C  +K ++L E  AK +LE +P++ G   L+SN+YA A +W  
Sbjct: 470 SMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDK 529

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           V +IR LM     KK+PG++ IEV+   H F + D +HPQ  EI +M+  L+ ++   GY
Sbjct: 530 VREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGY 589

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           +P T F  HD+DE+     L  HSE+LAIAFGL+ T  GT + I+KNLRVCGDCH  IK+
Sbjct: 590 VPRTEFVYHDLDEDQL---LSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKY 646

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S I  R I+VRDA RFHHF+ GACSC DYW
Sbjct: 647 ISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 126/321 (39%), Gaps = 68/321 (21%)

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W+ ++   S+          FR  +    + +S T    + AC    D+     +     
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRA-LPSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
            +G   D FVC+AL+ +Y++C  +++A ++FD MP +D V W+ M+        V  G  
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGF-----VTAGRP 189

Query: 246 V--IDMYAK-------------------CGSIDSAR-------EIFDRMRQKNVISWSAM 277
           V  + MY++                   C S  +AR        +     + +V++ +++
Sbjct: 190 VEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSL 249

Query: 278 IAAY-------------------------------GYHGQGKKALDLFPMMLSSRVLPNR 306
           ++ Y                                 +G+  +ALDLF  + +  + P  
Sbjct: 250 VSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCS 309

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
              VS L AC+  G ++ G  +   +      +  +   T ++D+  + G L+ A KL  
Sbjct: 310 WALVSALLACASVGFLKLGKSIHGFILRRLEWQCILG--TAVLDMYSKCGSLESARKLFN 367

Query: 367 SMSVEKDEGLWGALLGACRIH 387
            +S  +D  LW A++  C  H
Sbjct: 368 KLS-SRDLVLWNAIIACCGTH 387


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/550 (37%), Positives = 308/550 (56%), Gaps = 63/550 (11%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           ++  ++ +L+  YA   AL  A  +F+    ++   W+ M+   +             + 
Sbjct: 282 SDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADM 341

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMG-----RLIHDIVLKSGLDIDQFVCAALVDMYA 204
            R G+ +DSY+    ++AC       +      R +H   ++ G  +   V   L+D YA
Sbjct: 342 GRLGVPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYA 401

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVM---------------------------------- 230
           K  ++  A ++F  MP R+LV+W+ M                                  
Sbjct: 402 KLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITI 461

Query: 231 ------------IGANKFLLDVILG----------TAVIDMYAKCGSIDSAREIFDRM-R 267
                       +G  K L   IL            A++ MY KCG +++ R IF+ + R
Sbjct: 462 VSVLHACAGVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGR 521

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
           ++NV+SW+++I+ YG HG G+++L +F  M+   + PN ITFVS+L ACSH GLVE+G +
Sbjct: 522 RRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKK 581

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           LF SM + + V P  +HY CMVDLLGRAGRLDEA++LI+SM ++    +WG+LLGACRIH
Sbjct: 582 LFESMVE-YNVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIH 640

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
            +V+ AEMA   L + +P+N G+YVLL+++YA A     V  +++L+    L+K+PG +W
Sbjct: 641 GHVEYAEMACSHLFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSW 700

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           IEV+ K++ F   D+ +PQ EE+  ++     +++  GY+PDT   L+D++EE K   L 
Sbjct: 701 IEVKKKLYSFVSVDNKNPQVEELQALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILL 760

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLA+AFGLI T  G  IRI KNLR+C DCHS  K +S  T R I+VRD NRFHHF 
Sbjct: 761 GHSEKLAVAFGLIKTGSGEAIRITKNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFR 820

Query: 568 GGACSCRDYW 577
            G CSCRDYW
Sbjct: 821 NGVCSCRDYW 830



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D  L T +I+ YA   ++ +AR++FD    KN+  W+AM+ A      G++AL    
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLA 339

Query: 296 MMLSSRVLPNRITFVSLLYAC 316
            M    V  +  ++   L AC
Sbjct: 340 DMGRLGVPVDSYSYAHGLKAC 360


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/555 (36%), Positives = 312/555 (56%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  + +G       ++N L+ +Y    +L +A  +F+ M+ ++  SW++++ GF + 
Sbjct: 61  RRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQS 120

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +   + F    + G   D   L   I +C   K +  GR IH      G+D D    
Sbjct: 121 GRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTA 180

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------ANKFLL----------- 238
            A+++MY KC  I +A  +F +MP +++++W+ MI        A++ LL           
Sbjct: 181 NAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGME 240

Query: 239 ------------------------------------DVILGTAVIDMYAKCGSIDSAREI 262
                                                +++G  +++MY KCGS D AR++
Sbjct: 241 LDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDV 300

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M +KNV+SW+AM+AAYG +G+ ++AL LF  M    V PN ITFV++LY CSH+G  
Sbjct: 301 FDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKF 360

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++ +  F  M  DF + P   H+ C++D+LGR+G+L+EA +LI++M V  D  LW +LL 
Sbjct: 361 KDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLC 420

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC  HK+ D A  AA+   +R+P+    Y++LSN+YA   +W + AK+R  M +  ++K 
Sbjct: 421 ACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQ 480

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G +WIE++ ++H+F  GDS HP    I++ L  L  ++ + GY PD    +H ++EE K
Sbjct: 481 AGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEK 540

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L+ HSEKLA+AFG+ +TP  T + I+KNLRVC DCHS IK +S +  R I VRD+NR
Sbjct: 541 DEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNR 600

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC DYW
Sbjct: 601 FHHFDRGECSCGDYW 615



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 131/281 (46%), Gaps = 64/281 (22%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  +IR C   K +  GR IH  +    LD  +F+   LVDMY KC  + +A+++FD M 
Sbjct: 44  LEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQ 103

Query: 221 TRDLVTWTVMI--------------------------------------GANKFL----- 237
            +++ +WT+++                                      GA K L     
Sbjct: 104 HKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE 163

Query: 238 -----------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                       D++   A+I+MY KCGSI  A  +F RM +KNVISWS MIAA+  +  
Sbjct: 164 IHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNEL 223

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG----LRLFSSMWDDFAVRPDV 342
             +AL  F +M    +  +RIT+VS+L A +  G +E G    +R+  +  D   V  + 
Sbjct: 224 ADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNT 283

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
                +V++ G+ G  D+A  + +SM VEK+   W A+L A
Sbjct: 284 -----LVNMYGKCGSPDDARDVFDSM-VEKNVVSWNAMLAA 318


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/589 (36%), Positives = 324/589 (55%), Gaps = 61/589 (10%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIY 102
           MQM  D +    V+    ++ L +C  I Q+R   ++H   +  G   + +VAN  +  Y
Sbjct: 226 MQMQEDIE----VNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAY 281

Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
           A    L  A  +F  M+ +   SW+ ++GG ++  D       + +    G+  D +T+ 
Sbjct: 282 AKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIG 341

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM--- 219
            ++ A    K +  G+ +H  VL+ GL+ID F+  +L+ +Y  C     AR LFD M   
Sbjct: 342 SLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEK 401

Query: 220 -----------------PTRDLVTWTVMIG------------------------------ 232
                            P   L+ +  ++                               
Sbjct: 402 SSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETH 461

Query: 233 --ANKFLL--DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
             A K LL  DV +  + IDMYAK G I  +R +FD ++ K++ SW+A+IAAYG HG G+
Sbjct: 462 CYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGE 521

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           ++++LF  M     +P+  TF+ +L  CSH GLVEEGL+ F+ M +   + P ++HY C+
Sbjct: 522 ESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACV 581

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           +D+LGRAGRLD+AL+L+  M  + D  +W +LL  CR    +++ ++ A+ LLE +P+N 
Sbjct: 582 MDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNV 641

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
            +YV LSN+YA +GRW DV ++R ++    L+K  G +WIE+  K+H F  GD+  PQS+
Sbjct: 642 ENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSK 701

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           E+      L +K+   GY P+T+  LHDVDEE K+  L  HSEKLAI FGL+ T +GT +
Sbjct: 702 EMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTL 761

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI KNLR+C DCH+  K +S +T R II+RD  RFHHF+ G CSC DYW
Sbjct: 762 RIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G L ++ V N L+ +Y     +  A  +F+ M  R+ VSW+ ++ GFS+   
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF 112

Query: 139 FINCFETFREFIRC--GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +CF+   E +    G+  D  TL  V+  C    D+ MG  IH + +K GL  D  V 
Sbjct: 113 SKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVN 172

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
            +LVDMY+KC  + +A+ LFD+   ++ V+W  MIG 
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGG 209



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 51/229 (22%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D++T P VI+AC    D  +G +IH +V+K GL                           
Sbjct: 30  DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGL--------------------------- 62

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                               LLDV +G A+I MY K G +D+A ++F  M  +N++SW++
Sbjct: 63  --------------------LLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNS 102

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +I+ +  +G  K   D+   M++    +LP+  T V++L  C+    V+ G+R+   +  
Sbjct: 103 IISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRI-HGLAV 161

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              +  DV+    +VD+  + G L EA  L +  +  K+   W  ++G 
Sbjct: 162 KLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNN-RKNAVSWNTMIGG 209



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 48/242 (19%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++H   V  G   ++ V N L+ +Y+    LT+A  LF+    +++VSW+ M+GG     
Sbjct: 155 RIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKG 214

Query: 138 DFINCFETFREF-IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                F  FRE  ++  ++++  T+  ++ AC +   +   + +H   ++ G   D+ V 
Sbjct: 215 YIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVA 274

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
              V  YAKC ++  A ++F  M T+ + +W  +IG                    C   
Sbjct: 275 NGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG-------------------CAQ- 314

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
                                      +G  +KAL+L+  M  S ++P+  T  SLL A 
Sbjct: 315 ---------------------------NGDPRKALNLYIQMTYSGLVPDWFTIGSLLLAS 347

Query: 317 SH 318
           +H
Sbjct: 348 AH 349


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/538 (39%), Positives = 298/538 (55%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   LL +YA    + DA   F  +   D +  S M+  +++       FE F   +R  
Sbjct: 281 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 340

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           +  + Y+L  V++AC +   +  G+ IH+  +K G + D FV  AL+D YAKC  +D + 
Sbjct: 341 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 400

Query: 214 QLFDQMPTRDLVTW-TVMIGANK------------------------------------- 235
           ++F  +   + V+W T+++G ++                                     
Sbjct: 401 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 460

Query: 236 ----------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                           F  D ++G ++ID YAKCG I  A ++F  + ++++ISW+A+I+
Sbjct: 461 SIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIIS 520

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y  HGQ   AL+LF  M  S V  N ITFV+LL  C  TGLV  GL LF SM  D  ++
Sbjct: 521 GYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIK 580

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HYTC+V LLGRAGRL++AL+ I  +       +W ALL +C IHKNV L   +A+ 
Sbjct: 581 PSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEK 640

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           +LE +PQ+   YVLLSN+YA AG    VA +R  M    ++K+PG +W+E++ +IH FSV
Sbjct: 641 ILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSV 700

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           G   HP    I  ML  L+ K    GYIPD N  LHDVD+E K   L+ HSE+LA+A+GL
Sbjct: 701 GSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGL 760

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + TP G  IRI+KNLR C DCH+    +S I +R IIVRD NRFHHFE G CSC DYW
Sbjct: 761 VMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 154/342 (45%), Gaps = 39/342 (11%)

Query: 77  RQVHAQIVAGGTLT--NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VH  +V  G +   +L  AN LL +Y     L  A  LF+ M ER+ VS+  +V   +
Sbjct: 79  RAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHA 138

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +  DF      FR     G +++ + L  +++         +   +H    K G D + F
Sbjct: 139 QRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAF 198

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------NKF-------LLD 239
           V + L+D Y+ C ++ DA  +F+ +  +D V WT M+          N F       LL 
Sbjct: 199 VGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLA 258

Query: 240 VI--------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
           +                     +G A++DMYAKCG I  AR  F+ +   +VI  S MI+
Sbjct: 259 ISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMIS 318

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y    Q ++A +LF  ++ S VLPN  +  S+L AC++   ++ G ++ +         
Sbjct: 319 RYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAI-KIGHE 377

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            D+     ++D   +   +D +LK+  S+  + +E  W  ++
Sbjct: 378 SDLFVGNALMDFYAKCNDMDSSLKIFSSLR-DANEVSWNTIV 418



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 56/182 (30%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDAR 213
           +DS+     ++ C  R D   GR +H  V++ G    +D F    L++MY K   +  AR
Sbjct: 57  VDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASAR 116

Query: 214 QLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL------- 242
           +LFD+MP R++V++  ++ A                        N+F+L  +L       
Sbjct: 117 RLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMD 176

Query: 243 -----------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                  G+ +ID Y+ C  +  A  +F+ + +K+ + W+AM++
Sbjct: 177 AAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVS 236

Query: 280 AY 281
            Y
Sbjct: 237 CY 238


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/539 (39%), Positives = 309/539 (57%), Gaps = 35/539 (6%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           ++LLSC           ++ A   + +++  N ++   +   A+ +A A+F  M  R+SV
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 192

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           SW+ MV GF+   D     E FR     G   D+     ++    D     +G ++  I 
Sbjct: 193 SWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMD-----IGNVVKAIE 244

Query: 185 LKSGLDIDQFVC-AALVDMYAKCKVIDDARQLFDQM-------PTRDLVTWTVMIGANKF 236
               + +   V   A+V  Y K    DDA +LF  M       P    ++ +V++G +  
Sbjct: 245 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS-SVLLGCSNL 303

Query: 237 LL------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                               ++ +GT+++ MY KCG + SA ++F  M  ++V++W+AMI
Sbjct: 304 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 363

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           + Y  HG GK+A++LF  M    V PN ITFV++L AC HTGL + G+R F  M + + +
Sbjct: 364 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGI 423

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P V HY+CMVDLL RAG+L+ A+ LI SM  E     +G LL ACR++KN++ AE+AA 
Sbjct: 424 EPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAG 483

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L+E+ PQ+ G YV L+N+YA A +W DV+++R  M    + K PG++WIE++  +H+F 
Sbjct: 484 KLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFR 543

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
             D  HPQ   I+  L  L+E+++  GY+PD +F LHDVDE +KV  L  HSEKLAI+FG
Sbjct: 544 SNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFG 603

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI+T  G  +RI KNLRVCGDCH+  K +S I  R II+RD  RFHHF GG CSC DYW
Sbjct: 604 LISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 31/210 (14%)

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           + DAR LFD++PT D V++  ++                  +   G  D AR +F  M  
Sbjct: 114 LADARHLFDRIPTPDAVSYNTLLSC----------------HFASGDADGARRLFASMPV 157

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL--YACSH-TGLVEEG 325
           ++V+SW+ M++     G  ++A  +F  M     + N +++ +++  +ACS      EE 
Sbjct: 158 RDVVSWNTMVSGLSKSGAVEEAKAVFLAM----PVRNSVSWNAMVSGFACSRDMSAAEEW 213

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            R       +   + D   +T MV      G + +A++  E+M V ++   W A++    
Sbjct: 214 FR-------NAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPV-RNLVSWNAVVAGYV 265

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
            + + D A    ++++      P    L S
Sbjct: 266 KNSHADDALRLFRTMVREANVQPNASTLSS 295


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 324/604 (53%), Gaps = 92/604 (15%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL--YIYALHKALTDAHALFNGMKERDS 123
           SL SC+++ QI+Q HA ++  G + + I ANKLL   I +   +L+ AH LF+ + + D 
Sbjct: 21  SLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDV 80

Query: 124 VSWSVMVGGFSKV-ADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
             ++ M+   + +     N    F   +R  G   + YT  FV +AC +   ++ G  I 
Sbjct: 81  FIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIR 140

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR---------------------------- 213
              +K GL+ + FV  A++ MYA   ++D+AR                            
Sbjct: 141 VHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIG 200

Query: 214 ---QLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGT-- 244
              ++FD+M  RD+V+WT +I                          N+F L   L    
Sbjct: 201 RAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACA 260

Query: 245 ----------------------------AVIDMYAKCGSIDSAREIF-DRMRQK-NVISW 274
                                       +++DMYAKCG ID A ++F D    K  V  W
Sbjct: 261 NLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPW 320

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  Y  HG+ K+A+DLF  M   +V PN++TFV+LL ACSH  LVEEG   F SM  
Sbjct: 321 NAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMAS 380

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
            + + P+++HY CMVDLLGR+G L EA + + +M +  D  +WGALLGACRIHK+++  +
Sbjct: 381 SYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQ 440

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
              K + E    + G +VLL+N+Y+ +G+W +   +R  +     KK PG + IE+    
Sbjct: 441 RIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVF 500

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV-DEEVKVGNLYSHSEKL 513
           HQF VGD +HPQ++++Y  L  ++ KL+ AGY+P+    L D+ DEE K   L  HSEKL
Sbjct: 501 HQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKL 560

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAFGLI TP GT IRI+KNLRVC DCH   K +S + +R IIVRD  R+HHF+ G CSC
Sbjct: 561 AIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSC 620

Query: 574 RDYW 577
           +DYW
Sbjct: 621 KDYW 624


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 305/522 (58%), Gaps = 48/522 (9%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D    ++ L +C     I   RQVH+ I   G   NL + N L+ +Y+    L  A  LF
Sbjct: 234 DESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLF 293

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
            G+  +D +SW+ ++GG++ +  +      F++ +R G + +  T+  ++ AC     I 
Sbjct: 294 QGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAID 353

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
           +GR IH  + K                  + K + +A  L                    
Sbjct: 354 IGRWIHVYIDK------------------RLKGVTNASSL-------------------- 375

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                   T++IDMYAKCG I++A+++FD M  +++ SW+AMI  +  HG+   A D+F 
Sbjct: 376 -------RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFS 428

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M  + + P+ ITFV LL ACSH+G+++ G  +F SM  D+ + P ++HY CM+DL G +
Sbjct: 429 RMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHS 488

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G   EA K+I +M +E D  +W +LL AC++H NV+L E  A++L++ +P+NPG YVLLS
Sbjct: 489 GLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLS 548

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA A RW +VAK R L+  + +KK+PG + IE+++ +H+F +GD  HP++ EIY ML 
Sbjct: 549 NIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLE 608

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            +   LE AG++PDT+  L +++EE K G L  HSEKLAIAFGLI+T  GT + I+KNLR
Sbjct: 609 EMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLR 668

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VC +CH   K +S I +R II RD  RFHHF  G CSC DYW
Sbjct: 669 VCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 186/371 (50%), Gaps = 29/371 (7%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKE 120
           +S L  C+ +  +R +HAQ++  G        +KLL    L      L  A ++F+ ++E
Sbjct: 6   LSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQE 65

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
              + W+ M  G +  +D ++  + +   +  G+  +SYT PF++++C        G+ +
Sbjct: 66  PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H  VLK G D+D ++  +L+ MY +   ++DA+++ D+   RD+V++T            
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYT------------ 173

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
               A+I  YA  G I+SA ++FD +  K+V+SW+A I+ Y   G  K+AL+LF  M+ +
Sbjct: 174 ----ALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T V++L AC+ +G +E G R   S  +D     ++K    ++DL  + G L+ 
Sbjct: 230 NVRPDESTMVTVLSACAQSGSIELG-RQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  L + +S  KD   W  L+G    H N+    +     + R  + P    +LS + A 
Sbjct: 289 ACGLFQGLS-NKDVISWNTLIGG-YTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSAC 346

Query: 421 A-------GRW 424
           A       GRW
Sbjct: 347 AHLGAIDIGRW 357


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/487 (40%), Positives = 286/487 (58%), Gaps = 48/487 (9%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           +I  N ++  +     ++ A  +F+ M++RD+ +W  M+  + +    +   + F +  +
Sbjct: 265 VIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQK 324

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
            G++    +L  ++  C     +  GR +H               A LV    +C+  DD
Sbjct: 325 QGVRPSFPSLISILSVCATLASLQYGRQVH---------------AHLV----RCQFDDD 365

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                                       V + + ++ MY KCG +  A+ +FDR   K++
Sbjct: 366 ----------------------------VYVASVLMTMYVKCGELVKAKLVFDRFSSKDI 397

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           I W+++I+ Y  HG G++AL +F  M SS  +PN++T +++L ACS+ G +EEGL +F S
Sbjct: 398 IMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFES 457

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   F V P V+HY+C VD+LGRAG++D+A++LIESM+++ D  +WGALLGAC+ H  +D
Sbjct: 458 MESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLD 517

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE+AAK L E +P N G YVLLS++ A+  +W DVA +R  M    + K PG +WIEV 
Sbjct: 518 LAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVG 577

Query: 452 NKIHQFSVGD-STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            K+H F+ G    HP+   I  ML      L  AGY PD +  LHDVDEE KV +L  HS
Sbjct: 578 KKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHS 637

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LA+A+GL+  PEG  IR+MKNLRVCGDCH+ IK +S +T R II+RDANRFHHF  G 
Sbjct: 638 ERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGE 697

Query: 571 CSCRDYW 577
           CSCRDYW
Sbjct: 698 CSCRDYW 704



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 71/338 (21%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK---VADFINCFETFREFIRC 152
           N ++  Y  +    +A  LF+ M ER+ VSW+ +V G+ K   + +  N FE   E    
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPE---- 107

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
              + S+T                                     A+V  Y +  ++ +A
Sbjct: 108 -RNVVSWT-------------------------------------AMVKGYMQEGMVGEA 129

Query: 213 RQLFDQMPTRDLVTWTVMIG----------ANKF-----LLDVILGTAVIDMYAKCGSID 257
             LF +MP R+ V+WTVM G          A K      + DV+  T +I    + G +D
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR IFD MR++NV++W+ MI  Y  + +   A  LF +M         +++ S+L   +
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYT 245

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
            +G +E+    F  M     ++P V     M+   G  G + +A ++ + M  ++D   W
Sbjct: 246 LSGRIEDAEEFFEVM----PMKP-VIACNAMIVGFGEVGEISKARRVFDLME-DRDNATW 299

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
             ++ A    K  +L  +   + +++Q   P    L+S
Sbjct: 300 RGMIKAYE-RKGFELEALDLFAQMQKQGVRPSFPSLIS 336



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 31/238 (13%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           ++V  Y    +  +ARQLFD+M  R++V+W  ++                  Y K   I 
Sbjct: 53  SIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSG----------------YIKNRMIV 96

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR +F+ M ++NV+SW+AM+  Y   G   +A  LF  M       N +++  +     
Sbjct: 97  EARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLI 152

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G +++  +L+     D     DV   T M+  L R GR+DEA  + + M  E++   W
Sbjct: 153 DDGRIDKARKLY-----DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR-ERNVVTW 206

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPG-HYVLLSNVYANAGRWQDVAKIRDLM 434
             ++   R +  VD+    A+ L E  P+     +  +   Y  +GR +D  +  ++M
Sbjct: 207 TTMITGYRQNNRVDV----ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 20/217 (9%)

Query: 29  ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCRNIFQI---RQVHAQI 83
           A E  G E   ++    MQ        + V P F   IS L  C  +  +   RQVHA +
Sbjct: 305 AYERKGFELEALDLFAQMQ-------KQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357

Query: 84  VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143
           V      ++ VA+ L+ +Y     L  A  +F+    +D + W+ ++ G++         
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEAL 417

Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL----DIDQFVCAAL 199
           + F E    G   +  TL  ++ AC     +  G  I +  ++S       ++ + C   
Sbjct: 418 KIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFE-SMESKFCVTPTVEHYSCT-- 474

Query: 200 VDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANK 235
           VDM  +   +D A +L + M  + D   W  ++GA K
Sbjct: 475 VDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACK 511


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/528 (39%), Positives = 302/528 (57%), Gaps = 54/528 (10%)

Query: 53  QFTRSVDPKF---FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           Q   + DP      +S   +  ++  +R   A+IV+     +++    +L   +    + 
Sbjct: 152 QHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVS----PDVVCVTAMLGALSAGGDVD 207

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  LF+GM +RD V+W+ M+ G+ +V         F E  + G+ +   TL  V+ AC 
Sbjct: 208 TARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACA 267

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
                 MG       L+ G+ +  +VC+                                
Sbjct: 268 Q-----MG------ALERGMWVHSYVCS-------------------------------- 284

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                   + V LGTA++DMY+KCG +  + E+F+ MR++N+ +W++ ++    +G G++
Sbjct: 285 ----RGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEE 340

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
            L+LF  M S+ + PN +TFV++L  CS  GLVEEG   F SM D   V P ++HY CMV
Sbjct: 341 CLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMV 400

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DL GRAGRLD+A+  I SM VE  EG+WGALL A RIH NVDL + A   L E + +N  
Sbjct: 401 DLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDA 460

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            +VLLSN+YA +  W+ V+K+R++M  + +KK+PG + IEV+ K+H+F VG  +HP+ ++
Sbjct: 461 AHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKD 520

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           I  ML  +S +L L GY  +T   L D++EE K G +  HSEKLA+AFGLI  PE T IR
Sbjct: 521 IQTMLAEMSHRLRLQGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIR 580

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLRVC DCH + K +S +  R I++RD NRFHHF+ GACSCRDYW
Sbjct: 581 IVKNLRVCKDCHDYTKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 316/573 (55%), Gaps = 58/573 (10%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S++ +C ++  I   +Q+H   +  G  + L V + L  +Y+   A+ DA  +F  M 
Sbjct: 109 FSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 168

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D VSW+ M+ G+SK+ +F      F++ I   + +D + L   + AC   K    GR 
Sbjct: 169 CKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRS 228

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD-QMPTRDLVTWTVMIGA----- 233
           +H  V+K G + D FV  AL DMY+K   ++ A  +F      R++V++T +I       
Sbjct: 229 VHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 234 -------------------NKFLL------------------------------DVILGT 244
                              N+F                                D  + +
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            ++DMY KCG ++ A + FD +     I+W+++++ +G HG GK A+  F  M+   V P
Sbjct: 349 ILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKP 408

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N ITF+SLL  CSH GLVEEGL  F SM   + V P  +HY+C++DLLGRAGRL EA + 
Sbjct: 409 NAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEF 468

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I  M  E +   W + LGACRIH + ++ ++AA+ L++ +P+N G  VLLSN+YAN  +W
Sbjct: 469 INRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQW 528

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           +DV  +R  M    +KK+PG++W++V  K H F   D +H +   IY  L  L ++++ A
Sbjct: 529 EDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAA 588

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+P T+    D+D+ +K   L+ HSE++A+AF LI+ P G  I + KNLRVC DCHS I
Sbjct: 589 GYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAI 648

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S +T R IIVRD +RFHHF  G+CSC DYW
Sbjct: 649 KFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 169/361 (46%), Gaps = 59/361 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA ++  G      + N L+ +Y+    L  A  LF+ M +R+ VSW+ M+ G S+ 
Sbjct: 25  KQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQN 84

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           + F     TF     CG     +     IRAC     I MG+ +H + LK G+  + FV 
Sbjct: 85  SKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVG 144

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------------------- 231
           + L DMY+KC  + DA ++F++MP +D V+WT MI                         
Sbjct: 145 SNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVT 204

Query: 232 -------------GANK----------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                        GA K                F  D+ +G A+ DMY+K G ++SA  +
Sbjct: 205 IDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNV 264

Query: 263 FDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F    + +NV+S++ +I  Y    Q +K L +F  +    + PN  TF SL+ AC++   
Sbjct: 265 FGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAA 324

Query: 322 VEEGLRLFSS-MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           +E+G +L +  M  +F   P V   + +VD+ G+ G L+ A++  + +  +  E  W +L
Sbjct: 325 LEQGTQLHAQVMKINFDEDPFVS--SILVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSL 381

Query: 381 L 381
           +
Sbjct: 382 V 382



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 55/262 (20%)

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           M  D+  L  VI+     K +  G+ +H +++ +G     F+   LV+MY+KC  +D A 
Sbjct: 1   MLRDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHAL 60

Query: 214 QLFDQMPTRDLVTWTVMIGA----NKFLLDV-------ILG--------TAVIDMYAKCG 254
           +LFD MP R+LV+WT MI      +KF   +       I G        ++ I   A  G
Sbjct: 61  KLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLG 120

Query: 255 SIDSARE-----------------------------------IFDRMRQKNVISWSAMIA 279
           SI+  ++                                   +F+ M  K+ +SW+AMI 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y   G+ ++AL  F  M+   V  ++    S L AC      + G  + SS+       
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVV-KLGFE 239

Query: 340 PDVKHYTCMVDLLGRAGRLDEA 361
            D+     + D+  +AG ++ A
Sbjct: 240 SDIFVGNALTDMYSKAGDMESA 261


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 302/529 (57%), Gaps = 50/529 (9%)

Query: 52  CQFTR-SVDPKFFI-SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           CQ +R  V P  F  S++L+ +    + Q+HAQI+         VA  LL  Y     + 
Sbjct: 397 CQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVV 456

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           ++  +F  +  +D V+WS M+ G ++  D     E F + ++ G++ + YT   VI AC 
Sbjct: 457 ESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516

Query: 170 DRKDIV-MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
                V  G+ IH   +KSG               A C                      
Sbjct: 517 SSAATVEHGKQIHATAVKSG------------KSNALC---------------------- 542

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                        + +A++ MY+K G+I+SA ++F R  +++++SW++MI  YG HG  K
Sbjct: 543 -------------VSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAK 589

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           KAL++F +M +  +  + +TF+ +L AC+H GLVEEG + F+ M  D+ +    +HY+CM
Sbjct: 590 KALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCM 649

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDL  RAG  D+A+ +I  M       +W  LL ACR+H+N++L ++AA+ L+  QP + 
Sbjct: 650 VDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDA 709

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             YVLLSN++A AG W++ A +R LM  R++KK  G +WIE++N+I  F  GD +HP S+
Sbjct: 710 VGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSD 769

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
            +Y  L  LS KL+  GY PDTN+  HDV+EE K   L  HSE+LAIA+GLIA P G  I
Sbjct: 770 LVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPI 829

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +I KNLR+CGDCH+ I+ +S I  R +IVRD+NRFHHF+GG CSC  YW
Sbjct: 830 QIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 62/372 (16%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVHA IV  G      V N L+ +Y   + + DA A+F+ M  RDSV+W++M+GG++ + 
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            ++  F+ F      G++L        ++ C  ++++   + +H  V+K+G +  Q +  
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 198 ALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVMIGA----------------------- 233
           AL+  Y+KC  +D+A +LF       ++VTWT MIG                        
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVR 405

Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
            N F    +L                           TA++D Y K G++  +  +F  +
Sbjct: 406 PNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSI 465

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-GLVEEG 325
             K++++WSAM+         +KA+++F  ++   V PN  TF S++ ACS +   VE G
Sbjct: 466 PAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHG 525

Query: 326 LRLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            ++ ++     AV+    +  C    ++ +  + G ++ A K+      E+D   W +++
Sbjct: 526 KQIHAT-----AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQE-ERDIVSWNSMI 579

Query: 382 GACRIHKNVDLA 393
                H +   A
Sbjct: 580 TGYGQHGDAKKA 591



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 164/398 (41%), Gaps = 62/398 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH Q +  G L ++ V   L+ +Y   +   D   +F+ M  ++ VSW+ ++ G+++ 
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                      +    G+  + +T   V+ A  D   I  G  +H +++K+G +   FVC
Sbjct: 184 GLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVC 243

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---ANKFLLD------------VI 241
            AL+ MY K +++ DA  +FD M  RD VTW +MIG   A  F L+            V 
Sbjct: 244 NALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVK 303

Query: 242 LGTAVIDMYAK---------------CGSIDSAREIFDRMRQKNVISWS----------- 275
           L   V     K               CG + +  E    +R   ++++S           
Sbjct: 304 LSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 276 --------------AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
                         AMI  +  +   KKA+DLF  M    V PN  T+ ++L     + L
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL 423

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +   ++  + ++     P V   T ++D   + G + E+ ++  S+   KD   W A+L
Sbjct: 424 SQLHAQIIKAYYEKV---PSVA--TALLDAYVKTGNVVESARVFYSIPA-KDIVAWSAML 477

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
                 ++ + A M     L ++   P  Y   S + A
Sbjct: 478 TGLAQTRDSEKA-MEVFIQLVKEGVKPNEYTFSSVINA 514



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 142/367 (38%), Gaps = 78/367 (21%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           AH LF+    +D   ++ ++  FS+          F++    G+ +D  TL   ++ C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D V+GR +H   LKSG   D  V  +LVDMY K +  +D R +FD+M  +++V+WT +
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 231 ------------------------IGANKFLLDVILG----------------------- 243
                                   +  N F    +LG                       
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 244 -------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                   A+I MY K   +  A  +FD M  ++ ++W+ MI  Y   G   +   +F  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 297 MLSSRVLPNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           M  + V  +R  F + L  CS           H G+V+ G         +FA   D++  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGY--------EFA--QDIR-- 344

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           T ++    +   +DEA KL        +   W A++G   +  N +   +     + R+ 
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGF-VQNNNNKKAVDLFCQMSREG 403

Query: 406 QNPGHYV 412
             P H+ 
Sbjct: 404 VRPNHFT 410


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 327/603 (54%), Gaps = 87/603 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA-------- 113
           F + S    + + + +Q+H  ++  G   ++ V   L+ +YA +  L DAH         
Sbjct: 70  FLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR 129

Query: 114 -----------------------LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
                                  LF+ +  +D VSW+ M+ G+ +  +F    E +++ +
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+ AC     I +GR +H  +   G   +  +   L+D+Y+KC  ++
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVE 249

Query: 211 DARQLFDQMPTR------------------------------------DLVTWTVM---- 230
            A  LF  +  +                                    D+   +V+    
Sbjct: 250 TACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309

Query: 231 -IGA-----------NKFLLDVI----LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            +GA           NK L  V     L T++IDMYAKCG I++A+++FD M  +++ SW
Sbjct: 310 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 369

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   A DLF  M  + + P+ ITFV LL ACSH+G+++ G  +F SM  
Sbjct: 370 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 429

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG  G   EA ++I +M +E D  +W +LL AC++H NV+L E
Sbjct: 430 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGE 489

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+NPG YVLLSN+YA AGRW  VAKIR L+  + +KK PG + IE+++ +
Sbjct: 490 SYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVV 549

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F +GD  HP++ EIYRML  +   +E  G++PDT+  L +++EE K G L  HSEKLA
Sbjct: 550 HEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 609

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+T  GT + I+KNLRVC +CH   K +S I +R II RD  R H  + G  SC 
Sbjct: 610 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCH 669

Query: 575 DYW 577
           DYW
Sbjct: 670 DYW 672



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 177/327 (54%), Gaps = 30/327 (9%)

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            L+ A ++F  ++E + + W+ M  G +  +D +   + +   I  G+  +SY+ PF+++
Sbjct: 14  GLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           +C   K ++ G+ IH  VLK G D+D +V  +L+ MYA+   ++DA ++FD+   R +V+
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           +                TA+I  YA  G I++AR++FD +  K+V+SW+AMI+ Y     
Sbjct: 134 Y----------------TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCN 177

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            K+AL+L+  M+ + V P+  T V+++ AC+ +G +E G +L S + +D     ++K   
Sbjct: 178 FKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWI-EDHGFGSNIKIVN 236

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE--RQ 404
            ++DL  + G ++ A  L + ++ +KD   W  L+G    H +++L + A     E  R 
Sbjct: 237 VLIDLYSKCGEVETACGLFQGLA-KKDVISWNTLIGG---HTHMNLYKEALLLFQEMLRS 292

Query: 405 PQNPGHYVLLSNVYANA-------GRW 424
            ++P    +LS + A A       GRW
Sbjct: 293 GESPNDVTMLSVLPACAHLGAIDIGRW 319


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 311/575 (54%), Gaps = 61/575 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F++ L +C+++      H+ +V  G   +    N L+  Y     +  A  LF+ M  R+
Sbjct: 30  FVAKLQTCKDLTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDEMPHRN 89

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            VSW+ ++ G+            F +     +  + +T   +I AC    ++ +GR IH 
Sbjct: 90  VVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVLPNEFTFATLINACSILANLEIGRRIHA 149

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
           +V  SGL  +   C++L+DMY KC  +D+AR +FD M TR++V+WT MI           
Sbjct: 150 LVEVSGLGSNLVACSSLIDMYGKCNHVDEARLIFDSMCTRNVVSWTSMITTYSQNAQGHH 209

Query: 234 ----------------NKFLL-------------------------------DVILGTAV 246
                           N F+L                               DVI  +A+
Sbjct: 210 ALQLFKEFNHSRLDKPNHFMLCSAVSACASLGSLGSGKITHGVVIRLGHEASDVI-ASAL 268

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +DMYAKCG ++ + +IF R++  +VI +++MI     +G G  +L LF  M+  R+ PN 
Sbjct: 269 VDMYAKCGCVNYSAKIFRRIQNPSVIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPND 328

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           ITFV +L+ACSH+GLV++GL L  SM   + V PD KHYTC+ D+LGR GR++EA +L +
Sbjct: 329 ITFVGVLHACSHSGLVDKGLELLDSMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAK 388

Query: 367 SMSVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           S+ VE D    LWG LL A R++  VD+A  A+  L+E   Q  G YV LSN YA AG W
Sbjct: 389 SVQVEGDGYAMLWGTLLSASRLYGRVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDW 448

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD-STHPQSEEIYRMLVTLSEKLEL 483
           ++   +R  M    + K PG +WIE++   + F  GD S + Q  EI  +L  L E+++ 
Sbjct: 449 ENAHNLRSEMKHTGVYKEPGSSWIEIKESTYLFHAGDISKYTQGREILSLLRELEERMKG 508

Query: 484 AGYIPDT-NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
            GY+  T      DV+EE K   +  HSEKLA+AFGLI TP+G  IRIMKNLR+C DCH 
Sbjct: 509 RGYVGGTKGLVFVDVEEEAKEEIVSMHSEKLALAFGLINTPKGVTIRIMKNLRMCRDCHG 568

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K +S I  R ++VRD NRFHHF+ G C+C D+W
Sbjct: 569 AFKLISDIVERELVVRDVNRFHHFKNGLCTCGDFW 603


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/577 (35%), Positives = 314/577 (54%), Gaps = 56/577 (9%)

Query: 56   RSVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
            + +D    +S L +C   R  F  R VH   V  G +    +AN LL +Y+        +
Sbjct: 514  QELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTN 573

Query: 113  ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
             +F  M +++ VSW+ M+  + +   F       +E +  G++ D + +   + A    +
Sbjct: 574  QIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDE 633

Query: 173  DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMI 231
             +  G+ +H   +++G++    V  AL++MY KC+ +++AR +FD++  +D+++W T++ 
Sbjct: 634  SLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIG 693

Query: 232  GANK----------------------------------------------------FLLD 239
            G ++                                                    FL D
Sbjct: 694  GYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLED 753

Query: 240  VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                 A++DMY KCG++  AR +FDR+ +KN+ISW+ MIA YG HG GK A+ LF  M  
Sbjct: 754  SYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRG 813

Query: 300  SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            S + P+  +F ++LYAC H+GL  EG R F +M  ++ + P +KHYTC+VDLL R G L 
Sbjct: 814  SGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLK 873

Query: 360  EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
            EAL+ IESM +E D  +W +LL  CRIHKNV LAE  A  + + +P+N G+YVLL+N+YA
Sbjct: 874  EALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYA 933

Query: 420  NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
             A RW+ V K+++ +  R L++  G++WIEV +K+H F   +  HP    I   L  ++ 
Sbjct: 934  EAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVAR 993

Query: 480  KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
            ++   G+ P   + L   D+ V    L  HS KLA+AFG++  PEG  IR+ KN +VC  
Sbjct: 994  RMRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSH 1053

Query: 540  CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
            CH   K +S +  R II+RD++RFH FEGG CSCR Y
Sbjct: 1054 CHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 65/304 (21%)

Query: 77  RQVHAQIVAGGTLTNL----------IVANKLLYIYALHKALTDAHALFNGMKERDSVS- 125
           + VH   V  G L  L           + +KL+++Y     +  A  +F+ M  + +V  
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHV 384

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W++++GG++KV +F      F +    G+  D + +  +++          G + H  ++
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV 444

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANK---- 235
           K G      VC AL+  YAK  +I DA  +F++MP +D ++W  +I      G N     
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIE 504

Query: 236 ---------------FLLDVI-----------------------------LGTAVIDMYA 251
                           LL V+                             L  A++DMY+
Sbjct: 505 LFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYS 564

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            C    S  +IF  M QKNV+SW+AMI +Y   G   K   L   M+   + P+     S
Sbjct: 565 NCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTS 624

Query: 312 LLYA 315
            L+A
Sbjct: 625 ALHA 628



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 140/328 (42%), Gaps = 62/328 (18%)

Query: 71  RNIFQIRQVHAQIVAGGTLTN----LIVANKLLYIYALHKALTDAHALFNGMKER--DSV 124
           R++   ++ HA I A           ++  +L+  Y     L +A  +F+GM  +  D  
Sbjct: 111 RSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVR 170

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            W+ ++  ++K  DF      FR+   CG+  D++ +  V++       +  G +IH ++
Sbjct: 171 VWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLL 230

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
            K GL     V  AL+ +Y++C  ++DA ++FD M  RD ++W  MIG            
Sbjct: 231 EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGG----------- 279

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
                   C S                          G+HG    A+DLF  M S     
Sbjct: 280 --------CFS-------------------------NGWHGT---AVDLFSKMWSQGTEI 303

Query: 305 NRITFVSLLYACSHT--GLVEEGLRLFSS----MWDDFAVRP---DVKHYTCMVDLLGRA 355
           + +T +S+L AC+    GL+ + +  +S     +W   +V+    D    + +V +  + 
Sbjct: 304 SSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKC 363

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGA 383
           G +  A ++ ++MS + +  +W  ++G 
Sbjct: 364 GDMASARRVFDAMSSKGNVHVWNLIMGG 391


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/630 (34%), Positives = 337/630 (53%), Gaps = 94/630 (14%)

Query: 32  PHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTN 91
           P  H  +  NP+            +S+D K  IS L   ++I Q+  +HAQ++  G   +
Sbjct: 31  PKPHPNSNSNPKS----------LKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQD 80

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
             +  +LL   +   A+  A  +F      +   ++ ++ GF    ++ +  + +   + 
Sbjct: 81  PFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLH 140

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
             +  D+Y +  +++AC  +  +  GR +H   LK GL  ++ V   ++++Y KC  + D
Sbjct: 141 DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 200

Query: 212 ARQL------------------------------FDQMPTRDLVTWTVMIGA-------- 233
           AR++                              F ++  +D V WT MI          
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMN 260

Query: 234 ----------------NKFL------------------------------LDVILGTAVI 247
                           N+F                               L++ +G A+I
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALI 320

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           +MY++CGSID A+ +FD M+ ++VI+++ MI+    +G+ ++A++LF +M+  R+ P  +
Sbjct: 321 NMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNV 380

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TFV +L ACSH GLV+ G ++F SM  D+ V P ++HY CMVDLLGR GRL+EA  LI +
Sbjct: 381 TFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRT 440

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M +  D  + G LL AC++HKN++L E  AK L +R   + G YVLLS+VYA++G+W++ 
Sbjct: 441 MKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEA 500

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           A++R  M    ++K PG + IEV N+IH+F +GD  HP+ E IY  L  L+  L L GY 
Sbjct: 501 AQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYH 560

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P+    L D+++  K   L  HSE+LAI +GLI+T   T IR+MKNLRVC DCHS IK +
Sbjct: 561 PEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLI 620

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + ITRR ++VRD NRFH+FE GACSC DYW
Sbjct: 621 AKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 314/576 (54%), Gaps = 60/576 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQ--VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +P   IS   S R + QI+   + + I     +  LI             +++ A  LF 
Sbjct: 31  NPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAKLI---NFCTESPTESSMSYARHLFE 87

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M E D V ++ M  G+S+  + +  F  F E +  G+  D+YT P +++AC   K +  
Sbjct: 88  AMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE 147

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM----------------- 219
           GR +H + +K GLD + +VC  L++MY +C+ +D AR +FD++                 
Sbjct: 148 GRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYAR 207

Query: 220 ---PTRDLVTWTVMIGA----------------------------------NKFLLDVIL 242
              P   L  +  M G                                   + F   V +
Sbjct: 208 RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKV 267

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            TA+IDM+AKCGS+D A  IF++MR K+  +WSAMI AY  HG+ +K++ +F  M S  V
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENV 327

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ ITF+ LL ACSHTG VEEG + FS M   F + P +KHY  MVDLL  AG L++A 
Sbjct: 328 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAY 387

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + I+ + +     LW  LL AC  H N+DLAE  ++ + E    + G YV+LSN+YA   
Sbjct: 388 EFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNK 447

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W+ V  +R +M  R+  K+PG + IEV N +H+F  GD     + +++R L  + ++L+
Sbjct: 448 KWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELK 507

Query: 483 LAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           L+GY+PDT+  +H +++++ K   L  HSEKLAI FGL+ TP GT IR++KNLRVC DCH
Sbjct: 508 LSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCH 567

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  K +S I  R ++ RD  RFHHFE G CSC D+W
Sbjct: 568 NAAKLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/540 (39%), Positives = 310/540 (57%), Gaps = 29/540 (5%)

Query: 64  ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S L +C  +  I+   Q+H +IVA     ++ V N L  +YA   AL  A  LF+ M  
Sbjct: 159 VSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVN 218

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP----------FVIRACR- 169
           ++ VSW+ M+ G+ +      C + F E    G+  D  T+           ++  AC+ 
Sbjct: 219 KNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKT 278

Query: 170 ----DRKDIVMGRLIHDIVLKSGLDIDQFVCAALV-------DMYAKCKVIDDARQLFDQ 218
                 KD V    +     ++G + D  +    +       D +    V+    +L   
Sbjct: 279 FREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASL 338

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
              + +    V+ G +    D+++ +A++DMY+KCG    A  +F RM  +NVISW++MI
Sbjct: 339 CQGQAVHGKAVIFGVDH---DLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMI 395

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
             Y  +G+  +AL L+  ML   + P+ ITFV +L AC H GLVE G   F S+     +
Sbjct: 396 LGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGM 455

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P   HY+CM++LLGRAG +D+A+ LI+SM+ E +  +W  LL  CRI+ +V+  EMAA+
Sbjct: 456 NPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAAR 515

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L E  P N G Y++LSN+YA  GRW+DVA +R LM   ++KK   ++WIE++N++H+F 
Sbjct: 516 HLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFV 575

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
             D TH ++E+IY  L  L +KL+ +G+ PDTN  LHDV EE K  ++  HSEKLA+AF 
Sbjct: 576 AEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFW 635

Query: 519 LIATPEG-THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI  P G T IRIMKN+RVCGDCH F+K VS I RR II+RD NRFHHF  G CSC+D W
Sbjct: 636 LIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 186/424 (43%), Gaps = 57/424 (13%)

Query: 40  MNPRVPMQMGPDCQFTR-SVDPKFFISSLLSC---RNIFQIRQVHAQI-VAGGTLTNLIV 94
           M P   ++   D  ++R + + + +   LL C    ++ Q +++   + +     T+  +
Sbjct: 1   MKPTPRLREAIDALYSRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFL 60

Query: 95  ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE------ 148
            N+LL++YA    L+DA  LF+ M  RD  SW+ M+  +SK  +  +    F +      
Sbjct: 61  QNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDA 120

Query: 149 ----------------------FIRC---GMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
                                 F+R    G +   YT   V+ AC    DI  G+ IH  
Sbjct: 121 VSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGR 180

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------- 232
           ++ + L    FV  AL +MYAKC  +D AR LFD+M  +++V+W  MI            
Sbjct: 181 IVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETC 240

Query: 233 --------ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                   ++  + D +  + ++  Y +CG ID A + F  +++K+ + W+ M+     +
Sbjct: 241 TKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQN 300

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G+ + AL LF  ML   V P+  T  S++ +C+    + +G  +       F V  D+  
Sbjct: 301 GKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAV-IFGVDHDLLV 359

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER- 403
            + +VD+  + G   +A  + + M           +LG  +  K+++   +  + L E  
Sbjct: 360 SSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENL 419

Query: 404 QPQN 407
           +P N
Sbjct: 420 KPDN 423


>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 591

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/505 (38%), Positives = 305/505 (60%), Gaps = 52/505 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---S 134
           Q+H +I + G L++ ++   L+ +Y+  +  TDA  +F+ + +RD+VSW+V++  +    
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPQRDTVSWNVLISCYLRNK 193

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +  D +  F+  +  +   ++ D+ T    ++AC +   +  G+ +HD + ++GL     
Sbjct: 194 RTRDVLVLFDKMKNDVDRCVKPDNVTCLLALQACANLGALDFGKQVHDFIDENGLS---- 249

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
                                                GA      + L   ++ MY++CG
Sbjct: 250 -------------------------------------GA------LNLSNTLVSMYSRCG 266

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           S+D A E+F+RMR++NV+SW+AMI+    +G GK+A++ F  ML   + P   T   LL 
Sbjct: 267 SMDKAYEVFNRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLS 326

Query: 315 ACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
           ACSH+GLV+EG+  F  M   +F ++P++ HY C+VDLLGRA  LD+A  LI+SM ++ D
Sbjct: 327 ACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMKPD 386

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +W  LLGACR+H NV+L E     L+E + +  G YVLL N Y++ G+W+ V ++R L
Sbjct: 387 STIWRTLLGACRVHGNVELGERVIAHLIEFKAEEAGDYVLLLNTYSSVGKWEKVTELRSL 446

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M ++R++  PG + IE++  +H+F V D +HP+ EEIY+ML  ++++L++AGY+ +   E
Sbjct: 447 MKKKRIQTNPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSE 506

Query: 494 LHDVDEEVKVG-NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
           LH++D E + G  L  HSEKLAIAFG++ TP  T IR+ KNLR C DCH+F K VS +  
Sbjct: 507 LHNLDSEEEKGYALRYHSEKLAIAFGILVTPPETTIRVTKNLRTCVDCHNFAKFVSDVYD 566

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           RV+IVRD +RFHHF+GG+CSC D+W
Sbjct: 567 RVVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/486 (42%), Positives = 284/486 (58%), Gaps = 51/486 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-- 153
           N L+  Y     +  A  LF  M+ R+ VSW+ M+ G+++          F E ++ G  
Sbjct: 177 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 236

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           M+ +  T+  V+ AC     +  GR IHD     GL ++  V                  
Sbjct: 237 MKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSV------------------ 278

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV 271
                                         TA+  MYAKC S+  AR  FD + Q  KN+
Sbjct: 279 -----------------------------QTALAGMYAKCYSLVEARCCFDMIAQNGKNL 309

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           I+W+ MI AY  HG G +A+ +F  ML + V P+ +TF+ LL  CSH+GL++ GL  F+ 
Sbjct: 310 IAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFND 369

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M    +V P V+HY C+VDLLGRAGRL EA +LI  M ++    +WGALL ACR H+N++
Sbjct: 370 MGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLE 429

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           +AE+AA+ L   +P N G+YVLLSN+YA AG W++V K+R L+  + +KK PG +WIE+ 
Sbjct: 430 IAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEIN 489

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
            K H F   D +HPQ++EIY+ L  L EK+++AGYIPDT+F LHD+ EE K  NL +HSE
Sbjct: 490 GKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSE 549

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLAIAFGL+ T  G  +R+ KNLR+CGDCH+  K +S I  R IIVRD NRFH F+ G+C
Sbjct: 550 KLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSC 609

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 610 SCGDYW 615



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 18/178 (10%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+  D++TLPFV+++C D   + MGR +H   L+ GL+ D +V A+L+DMY KC VI DA
Sbjct: 102 GLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDA 161

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
           R+LFD+M  RD+ +W  +I                  Y K G I  A ++F+RM  +N++
Sbjct: 162 RKLFDKMIVRDMASWNALIAG----------------YMKEGEIGVAEDLFERMEHRNIV 205

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           SW+AMI+ Y  +G  ++AL LF  ML   S + PN +T VS+L AC+ +  +E G R+
Sbjct: 206 SWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRI 263



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGGFS 134
           R++H      G   N  V   L  +YA   +L +A   F+ + +  ++ ++W+ M+  ++
Sbjct: 261 RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 320

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-------RLIHDIVLKS 187
                +     F   +R G+Q D+ T   ++  C     I  G         IH +  + 
Sbjct: 321 SHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPR- 379

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
              ++ + C  +VD+  +   + +A++L  QMP +     W  ++ A
Sbjct: 380 ---VEHYAC--VVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAA 421


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/501 (39%), Positives = 296/501 (59%), Gaps = 45/501 (8%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQVH+ I   G  +NL + N L+ +Y+    +  A  LF G+  +D +SW+ M+GG++ +
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +      F+E +R G   +  T+  ++ AC     I  GR IH  + K          
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDK---------- 364

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
                   + K + +A  L                            T++IDMYAKCG I
Sbjct: 365 --------RIKGVTNASSL---------------------------RTSLIDMYAKCGDI 389

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           ++A ++F+ M  + + + +AMI  +  HG+   A D+F  M  + + P+ ITFV LL AC
Sbjct: 390 EAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSAC 449

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH+G+++ G R+F SM  ++ + P ++HY CM+DLLG  G   EA ++I +M++E D  +
Sbjct: 450 SHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVI 509

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W +LL AC++H NV+L E  A+ L++ +P+NPG YVLLSN+YA AGRW +VA IR L+  
Sbjct: 510 WCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLND 569

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + +KK+PG + IE+++ +H+F +GD  HP++ EIY ML  +   LE AG++PDT+  L +
Sbjct: 570 KGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQE 629

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++EE K G L  HSEKLAIAFGLI+T  GT + I+KNLRVC +CH   K +S I +R II
Sbjct: 630 MEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREII 689

Query: 557 VRDANRFHHFEGGACSCRDYW 577
            RD  RFHHF  G CSC DYW
Sbjct: 690 ARDRTRFHHFRDGVCSCNDYW 710



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 190/374 (50%), Gaps = 29/374 (7%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKE 120
           +S L +C+ +  +R +HAQ++  G        ++LL    L      L  A ++F  ++E
Sbjct: 6   LSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQE 65

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            + + W+ M  G +  +D ++  + +   I  G+  +SYT PF++++C   K    G+ I
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQI 125

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H  VLK G ++D +V  +L+ MY K     DA ++FD    RD+V++             
Sbjct: 126 HGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSY------------- 172

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
              TA+I  YA  G I+SA+++FD +  K+V+SW+A+I+ Y   G  K+ALDLF  M+ +
Sbjct: 173 ---TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT 229

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T V+++ AC+ +G ++ G R   S  DD  +  ++K    ++DL  + G ++ 
Sbjct: 230 NVKPDESTMVTVVSACAQSGSIQLG-RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVET 288

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  L + +S  KD   W  ++G    H N+    +     + R  +NP    +LS + A 
Sbjct: 289 ACGLFQGLS-NKDVISWNTMIGG-YTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPAC 346

Query: 421 A-------GRWQDV 427
           A       GRW  V
Sbjct: 347 AQLGAIDFGRWIHV 360


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/506 (39%), Positives = 301/506 (59%), Gaps = 22/506 (4%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   V  G + N+ V + L+ +YA   ++  A  +F+ M  RD VSW+ ++  +   
Sbjct: 253 RAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTN 312

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRAC----RDRKDIVMGRLIHDIVLKSG-LDI 191
            ++      F +    G++ D  T   VI  C    +  K + M R + ++  K   + I
Sbjct: 313 REYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITI 372

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
             F+ A        C +++  R +  ++       W  +IG      D+   TA++ MYA
Sbjct: 373 SSFLPA--------CSILESLR-MGKEVHCYVFRHW--LIG------DLTTMTALVYMYA 415

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KCG ++ +R +FD + +K+V++W+ MI A   HG G++ L LF  ML S + PN +TF  
Sbjct: 416 KCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTG 475

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +L  CSH+ LVEEGL++F+SM  D  V PD  HY CMVD+  RAGRL EA + I+ M +E
Sbjct: 476 VLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPME 535

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
                WGALLGACR++KNV+LA+++A  L E +P NPG+YV L N+   A  W + ++ R
Sbjct: 536 PTASAWGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEAR 595

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
            LM  R + K PG +W++V +++H F VGD  + +S++IY  L  L EK++ AGY PDT+
Sbjct: 596 ILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTD 655

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
           + L D+D+E K  +L SHSEKLA+AFG++     + IR+ KNLR+CGDCH+ IK+VS + 
Sbjct: 656 YVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVV 715

Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
              IIVRD+ RFHHF  G CSC+D W
Sbjct: 716 GVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 155/325 (47%), Gaps = 34/325 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           ++++VH   +  G +++  + N L++ Y   K +  A  +F+ +  +D VSW+ M     
Sbjct: 150 RVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMS---- 205

Query: 135 KVADFINC------FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
             + ++NC         F E    G++ +S TL  ++ AC + KD+  GR IH   ++ G
Sbjct: 206 --SCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHG 263

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248
           +  + FVC+ALV +YA+C  +  AR +FD MP RD+V+W                  V+ 
Sbjct: 264 MIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSW----------------NGVLT 307

Query: 249 MYAKCGSIDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            Y      D    +F +M  K V     +W+A+I     +GQ +KA+++   M +    P
Sbjct: 308 AYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKP 367

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N+IT  S L ACS    +  G  +   ++  + +  D+   T +V +  + G L+ +  +
Sbjct: 368 NQITISSFLPACSILESLRMGKEVHCYVFRHWLI-GDLTTMTALVYMYAKCGDLNLSRNV 426

Query: 365 IESMSVEKDEGLWGALLGACRIHKN 389
            + M   KD   W  ++ A  +H N
Sbjct: 427 FD-MICRKDVVAWNTMIIANAMHGN 450



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 55/285 (19%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+ + + D  + S ++  F+           +      G++  +     V +AC  
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGA 144

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D    + +HD  ++ G+  D F+  AL+  Y KCK ++ AR++FD +  +D+V+WT M
Sbjct: 145 SGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSM 204

Query: 231 ------------------------IGANKFLLDVILG----------------------- 243
                                   +  N   L  IL                        
Sbjct: 205 SSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGM 264

Query: 244 -------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                  +A++ +YA+C S+  AR +FD M  ++V+SW+ ++ AY  + +  K L LF  
Sbjct: 265 IENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQ 324

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
           M S  V  +  T+ +++  C   G  E+ + +   M  +   +P+
Sbjct: 325 MSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKM-QNLGFKPN 368


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/539 (39%), Positives = 309/539 (57%), Gaps = 35/539 (6%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           ++LLSC           ++ A   + +++  N ++   +   A+ +A A+F  M  R+SV
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 143

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           SW+ MV GF+   D     E FR     G   D+     ++    D     +G ++  I 
Sbjct: 144 SWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMD-----IGNVVKAIE 195

Query: 185 LKSGLDIDQFVC-AALVDMYAKCKVIDDARQLFDQM-------PTRDLVTWTVMIGANKF 236
               + +   V   A+V  Y K    DDA +LF  M       P    ++ +V++G +  
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLS-SVLLGCSNL 254

Query: 237 LL------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                               ++ +GT+++ MY KCG + SA ++F  M  ++V++W+AMI
Sbjct: 255 SALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMI 314

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           + Y  HG GK+A++LF  M    V PN ITFV++L AC HTGL + G+R F  M + + +
Sbjct: 315 SGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGI 374

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P V HY+CMVDLL RAG+L+ A+ LI SM  E     +G LL ACR++KN++ AE+AA 
Sbjct: 375 EPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAG 434

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L+E+ PQ+ G YV L+N+YA A +W DV+++R  M    + K PG++WIE++  +H+F 
Sbjct: 435 KLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFR 494

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
             D  HPQ   I+  L  L+E+++  GY+PD +F LHDVDE +KV  L  HSEKLAI+FG
Sbjct: 495 SNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFG 554

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI+T  G  +RI KNLRVCGDCH+  K +S I  R II+RD  RFHHF GG CSC DYW
Sbjct: 555 LISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 31/210 (14%)

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           + DAR LFD++PT D V++  ++                  +   G  D AR +F  M  
Sbjct: 65  LADARHLFDRIPTPDAVSYNTLLSC----------------HFASGDADGARRLFASMPV 108

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL--YACSH-TGLVEEG 325
           ++V+SW+ M++     G  ++A  +F  M     + N +++ +++  +ACS      EE 
Sbjct: 109 RDVVSWNTMVSGLSKSGAVEEAKAVFLAM----PVRNSVSWNAMVSGFACSRDMSAAEEW 164

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            R       +   + D   +T MV      G + +A++  E+M V ++   W A++    
Sbjct: 165 FR-------NAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPV-RNLVSWNAVVAGYV 216

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
            + + D A    ++++      P    L S
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSS 246


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 309/557 (55%), Gaps = 54/557 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           ++ ++H  I   G      + N L+ +Y   ++  DA  +F+ ++  + +SW+ M+G + 
Sbjct: 380 ELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYV 439

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +     +  + FR   + G+Q D      ++ AC         +L+H  V +SGL     
Sbjct: 440 QCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPL 499

Query: 195 VCAALVDMYAKCKVID---------DARQL---------------------------FDQ 218
           V  +LV+MYAK   +D         D +Q+                            + 
Sbjct: 500 VQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEA 559

Query: 219 MPTRDLVTWTV--------------MIGANKFLL----DVILGTAVIDMYAKCGSIDSAR 260
           +P   +   +V              MI +N        DVI+  A+ +MY+KCGS+++AR
Sbjct: 560 IPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENAR 619

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            IFD M  ++ +SW+ M+ AY  HG+ ++ L L   M    V  N ITFVS+L +CSH G
Sbjct: 620 RIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAG 679

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           L+ EG + F S+  D  +    +HY C+VDLLGRAG+L EA K I  M +E     W +L
Sbjct: 680 LIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASL 739

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           LGACR+ K++D  ++AA  LLE  P N    V+LSN+Y+  G W++ AK+R  M  RR+K
Sbjct: 740 LGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVK 799

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K+PG + I+V+NK+H+F V D++HP++ EIY  +  L   +  AGY+PDT   LHDVDEE
Sbjct: 800 KVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEE 859

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLAIAFGLI+TPE + + I KNLRVC DCH+  K +S IT R I+VRD 
Sbjct: 860 QKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDN 919

Query: 561 NRFHHFEGGACSCRDYW 577
           +RFHHF  G+CSC+DYW
Sbjct: 920 HRFHHFRDGSCSCKDYW 936



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 181/396 (45%), Gaps = 60/396 (15%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y+   +L DA A F  ++ R+ VSW+VM+  +S    F      F   +  G+  ++ T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  V+ +C   +++  G L+H + L+ G   +  V  AL++MY KC  + DA+ +F++M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 221 TRDLVTWTVMIGA---------------------------------------------NK 235
            +++VTW  M+G                                               K
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 236 FL----------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           F+          LDV + TA+++ Y KCGS+  AR++FD M  ++V +W++MI+AY    
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           +  +A  +F  M       +R+TF+S+L AC +   ++ G  +  S+  + +   D+   
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESI-SETSFELDLFVG 299

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           T ++ +  R    ++A ++   M  + +   W A++ A   H +   A +    +++++ 
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHGHCGEA-LRYFRMMQQEG 357

Query: 406 QNPGHYVLLS--NVYANAGRWQDVAKIRDLMTRRRL 439
             P     +S  N +      +++++I  L+T   L
Sbjct: 358 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 167/389 (42%), Gaps = 65/389 (16%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F+S L +C N   +   + V   I       +L V   L+ +YA  ++  DA  +F
Sbjct: 260 DRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVF 319

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREF---IRCGMQLDSYTLPFVIRACRDRK 172
             MK+ + ++WS ++  F   AD  +C E  R F    + G+  +  T   ++       
Sbjct: 320 GRMKQTNLITWSAIITAF---ADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPS 376

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
            +     IH ++ + GLD    +  ALV++Y +C+  DDAR +FDQ+   +L++W  MIG
Sbjct: 377 GLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIG 436

Query: 233 ------------------------ANKFLLDVILGTAVI--------------------- 247
                                    ++     ILG   I                     
Sbjct: 437 IYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGG 496

Query: 248 ---------DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                    +MYAK G +D A  I   M ++ + +W+ +I  Y  HG+ ++AL+ +  + 
Sbjct: 497 SPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQ 556

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              +  +++TF+S+L AC+ +  + EG ++  S   +  +  DV     + ++  + G +
Sbjct: 557 LEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSM 615

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIH 387
           + A ++ +SM + +    W  +L A   H
Sbjct: 616 ENARRIFDSMPI-RSAVSWNGMLQAYAQH 643



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 196/481 (40%), Gaps = 105/481 (21%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            ++ L SC +  ++R    VHA  +  G   N +VA  LL +Y     L DA ++F  M 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 120 ERDSVSWSVMVGGFS------KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           E++ V+W+ M+G +S      K+A      E F   +  G++ +  T   V+ +  D   
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLA-----VELFTRMLLEGVKANVITFLNVLNSVVDPDA 175

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           +  G+ IH  V +S   +D FV  ALV+ Y KC  + DAR++FD MP R + TW  MI A
Sbjct: 176 LRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISA 235

Query: 234 --------NKFLL-----------DVILGTAVIDMYAKCGSIDSAREIFDRMRQK----N 270
                     F +           D +   +++D      ++   + + + + +     +
Sbjct: 236 YSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELD 295

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSR----------------------------- 301
           +   +A+I  Y      + A  +F  M  +                              
Sbjct: 296 LFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ 355

Query: 302 --VLPNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWD-------------- 334
             +LPNR+TF+SLL   +           H  + E GL   ++M +              
Sbjct: 356 EGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDD 415

Query: 335 -----DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRI 386
                D    P++  +  M+ +  +  R D+AL+L  +M    ++ D   +  +LGAC I
Sbjct: 416 ARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTI 475

Query: 387 HKNVDLAEMAAKSLLERQ-PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
             +    ++  + + E     +P     L N+YA AG   DVA++  ++     ++I  W
Sbjct: 476 GSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGEL-DVAEV--ILQEMDEQQITAW 532

Query: 446 T 446
            
Sbjct: 533 N 533


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/555 (36%), Positives = 300/555 (54%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+H   +  G  +++ V+  L+ +Y+ +  L  A  +   ++ +D VSW+ M+ G+ + 
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  ETF++    G+  D+  L   I AC   K +  G+ IH  V  SG   D  + 
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------------- 230
            ALV++YA+C    +A  LF+ +  +D +TW  M                          
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544

Query: 231 ---------IGANKFLLDVILG-------------------TAVIDMYAKCGSIDSAREI 262
                    I A+  L D+  G                    A+I +Y KCGSI+ A+  
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQ 604

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M ++N +SW+ +I +   HG G +ALDLF  M    + PN +TF+ +L ACSH GLV
Sbjct: 605 FFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 664

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEGL  F SM  +  + P   HY C+VD+LGRAG+LD A K +E M V  +  +W  LL 
Sbjct: 665 EEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLS 724

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+HKN+++ E+AAK LLE +P +   YVLLSN YA  G+W     +R +M  R ++K 
Sbjct: 725 ACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKE 784

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV+N +H F VGD  HP + +IY+ L  L ++L   GYI    F  H+ ++E K
Sbjct: 785 PGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQK 844

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               + HSEKLA+AFGL++ P    +R++KNLRVC DCH+++K  S +  R I++RD  R
Sbjct: 845 DPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYR 904

Query: 563 FHHFEGGACSCRDYW 577
           FHHF  G CSC D+W
Sbjct: 905 FHHFNNGNCSCGDFW 919



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/392 (20%), Positives = 179/392 (45%), Gaps = 61/392 (15%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           PDC    S+     +++  S  ++ + +Q+H+ ++  G   + I+   LL +Y     + 
Sbjct: 242 PDCVTIASL-----LAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIV 296

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           +A  +F      + V W++M+  + +++D    F+ F + +  G++ + +T P ++R C 
Sbjct: 297 EALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCT 356

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
              +I +G  IH + +K+G + D +V   L+DMY+K   +D AR++ + +  +D+V+WT 
Sbjct: 357 YAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTS 416

Query: 230 MIGA---NKFLLDVILGTAVIDMY-------------AKCGSIDSARE------------ 261
           MI     ++F  + +     + ++             + C  I + R+            
Sbjct: 417 MIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSG 476

Query: 262 --------------------------IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                                     +F+ +  K+ I+W+ M++ +   G  ++AL++F 
Sbjct: 477 YSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFI 536

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M  + V  N  TFVS + A ++   +++G ++ +++        + +    ++ L G+ 
Sbjct: 537 KMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKC 595

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           G +++A      MS E++   W  ++ +C  H
Sbjct: 596 GSIEDAKMQFFEMS-ERNHVSWNTIITSCSQH 626



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 179/422 (42%), Gaps = 45/422 (10%)

Query: 51  DCQFTRSVDPKFFISSLLSCRNIFQ----IRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106
            C+   SVD   F  +L  CR   +    +  +HA+ +  G   + I  N L+ +YA   
Sbjct: 35  QCRGLGSVD---FACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKG 91

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            +  A  +F  +  RD+VSW  M+ G+++          + +    G+    Y L  V+ 
Sbjct: 92  LVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLS 151

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           AC        GRL+H  V K G   +  V  AL+ +Y +   +  A ++F +MP  D VT
Sbjct: 152 ACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVT 211

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNVISWSAMIAAYG 282
           +  +                I  +A+CG+ +SA EIF+ MR      + ++ ++++AA  
Sbjct: 212 FNTL----------------ISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
             G   K   L   +L + + P+ I   SLL      G++ E L +F S       R +V
Sbjct: 256 SIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKS-----GDRTNV 310

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAE----M 395
             +  M+   G+   L ++  L   M    V  +E  +  LL  C     ++L E    +
Sbjct: 311 VLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLL 370

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           + K+  E      G   +L ++Y+  G W D  K R ++     K +  WT +      H
Sbjct: 371 SIKTGFESDMYVSG---VLIDMYSKYG-WLD--KARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 456 QF 457
           +F
Sbjct: 425 EF 426



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 125/305 (40%), Gaps = 56/305 (18%)

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR-KDIVM 176
           M  R + S +  + GF    D       F   +R    L S      +R CR   K   +
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
             +IH   +  GL  D+     L+D+YAK  ++  AR++F+Q+  RD V+W  M+     
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 234 ---------------------NKFLLDVIL------------------------------ 242
                                  ++L  +L                              
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G A+I +Y + GS+  A  +F  M   + ++++ +I+ +   G G+ AL++F  M  S  
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +T  SLL AC+  G + +G +L S +     + PD      ++DL  + G + EAL
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGVIVEAL 299

Query: 363 KLIES 367
           ++ +S
Sbjct: 300 EIFKS 304



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 92/189 (48%), Gaps = 11/189 (5%)

Query: 63  FISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F+SS+ +  N   I Q +Q+HA ++  G  +   VAN L+ +Y    ++ DA   F  M 
Sbjct: 550 FVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMS 609

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+ VSW+ ++   S+    +   + F +  + G++ +  T   V+ AC     +V   L
Sbjct: 610 ERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAAC-SHVGLVEEGL 668

Query: 180 IHDIVLKSGLDI----DQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGAN 234
            +   + S   I    D + C  +VD+  +   +D AR+  ++MP + + + W  ++ A 
Sbjct: 669 GYFKSMSSEHGIHPRPDHYAC--VVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSAC 726

Query: 235 KFLLDVILG 243
           +   ++ +G
Sbjct: 727 RVHKNIEIG 735


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/528 (39%), Positives = 287/528 (54%), Gaps = 52/528 (9%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           P   F+ SV+     +    C  + + RQV  Q+     + +L+  N +L  Y     + 
Sbjct: 324 PSLDFSLSVNNAL-ATLYWKCGKVDEARQVFNQM----PVKDLVSWNAILSGYVNAGRID 378

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           +A + F  M ER+ ++W+VM+ G ++        + F      G +   Y     I AC 
Sbjct: 379 EAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACA 438

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
               ++ GR +H  +++ G D                                       
Sbjct: 439 WLAALMHGRQLHAQLVRLGFDSS------------------------------------- 461

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                     +  G A+I MYAKCG +++A  +F  M   + +SW+AMIAA G HG G +
Sbjct: 462 ----------LSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQ 511

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL+LF +ML   +LP+RITF+++L  CSH GLVEEG R F SM   + + P   HY  M+
Sbjct: 512 ALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMI 571

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLL RAG+  EA  +IE+M VE    +W ALL  CRIH N+DL   AA+ L E  PQ+ G
Sbjct: 572 DLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDG 631

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            YVLLSN+YA  GRW DVAK+R LM  + +KK PG +WIEVENK+H F V D  HP+ + 
Sbjct: 632 TYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQA 691

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           +Y  L  L  K+   GYIPDT F LHD++ E K   L +HSEKLA+ FGL+  P G  +R
Sbjct: 692 VYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVR 751

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + KNLR+CGDCH+  K +S +  R I+VRD  RFHHF+ G CSC +YW
Sbjct: 752 VFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 168/383 (43%), Gaps = 81/383 (21%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---------------- 120
           R VHA ++A G      + N+L+ +Y     L  AH LF+ +++                
Sbjct: 35  RTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSA 94

Query: 121 -----------------RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
                            RD+V ++ M+ G+S   D     E FR+ +R G + D++T   
Sbjct: 95  GNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTS 154

Query: 164 VIRA----CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---------ID 210
           V+ A      D K     + IH  V+KSG      V  AL+ ++ KC           + 
Sbjct: 155 VLGALALIVEDEKQC---QQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMA 211

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR+LFD+M  RD ++WT MI                  Y + G +D+AR+  D M +K 
Sbjct: 212 AARKLFDEMTERDELSWTTMIAG----------------YVRNGELDAARQFLDGMTEKL 255

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V++W+AMI+ Y +HG   +AL++F  M    +  +  T+ S+L AC++ G    G ++ +
Sbjct: 256 VVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHA 315

Query: 331 SMWD-------DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            +         DF++  +      +  L  + G++DEA ++   M V KD   W A+L  
Sbjct: 316 YILRTEPRPSLDFSLSVN----NALATLYWKCGKVDEARQVFNQMPV-KDLVSWNAILSG 370

Query: 384 CRIHKNVDLAEMAAKSLLERQPQ 406
                 +D     AKS  E  P+
Sbjct: 371 YVNAGRID----EAKSFFEEMPE 389



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 62/291 (21%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
           + R +H  ++ SG     ++   L+D+Y K   +  A  LFD++   D+V  T +I A  
Sbjct: 33  IARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAA-- 90

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIF--DRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                         ++  G+ + AREIF    +  ++ + ++AMI  Y ++  G  A++L
Sbjct: 91  --------------HSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIEL 136

Query: 294 FPMMLSSRVLPNRITFVSLLYACS------------HTGLVEEGLRLFSS---------- 331
           F  +L +   P+  TF S+L A +            H  +V+ G    +S          
Sbjct: 137 FRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFV 196

Query: 332 -------------------MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
                              ++D+   R ++  +T M+    R G LD A + ++ M+ EK
Sbjct: 197 KCASSPLVSSSSLMAAARKLFDEMTERDELS-WTTMIAGYVRNGELDAARQFLDGMT-EK 254

Query: 373 DEGLWGALLGACRIHK-NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
               W A++     H   ++  EM  K  L     +   Y  + +  ANAG
Sbjct: 255 LVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAG 305


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 324/597 (54%), Gaps = 94/597 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R + + ++VH  I   G +  +++ N+LL +YA   +L DA  +F+ M  RD  SW+VMV
Sbjct: 99  RALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMV 158

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI--------------------RACRD 170
            G+++V       + F E      + DSY+   ++                    R    
Sbjct: 159 NGYAEVGLLEEARKLFDEMT----EKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS 214

Query: 171 RKDIVM----------------GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           R +I                  G+ IH  ++++GLD D+ + ++L+DMY KC  ID+AR 
Sbjct: 215 RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARN 274

Query: 215 LFDQMPTRDLVTWTVM--------------------IGA----NKFLLDVILG------- 243
           +FD++  +D+V+WT M                    +G+    N++    +L        
Sbjct: 275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTT 334

Query: 244 -----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                  ++++DMY KCG+I+SA+ + D   + +++SW+++I  
Sbjct: 335 EELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGG 394

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
              +GQ  +AL  F ++L S   P+ +TFV++L AC+H GLVE+GL  F S+ +   +  
Sbjct: 395 CAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSH 454

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
              HYTC+VDLL R+GR ++   +I  M ++  + LW ++LG C  + N+DLAE AA+ L
Sbjct: 455 TSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQEL 514

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
            + +P+NP  YV ++N+YA AG+W++  K+R  M    + K PG +W E++ K H F   
Sbjct: 515 FKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAA 574

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D++HP   +I   L  L +K++  GY+P T+  LHDV++E K  NL  HSEKLA+AF ++
Sbjct: 575 DTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAIL 634

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +T EGT I++ KNLR C DCH  IK +S IT+R I VRD+ RFH FE G CSC DYW
Sbjct: 635 STEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 23/221 (10%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +I+ C   + +  G+ +H+ +  SG      +   L+ MYAKC  + DAR++FD+MP RD
Sbjct: 91  LIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRD 150

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           L +W VM+                  YA+ G ++ AR++FD M +K+  SW+AM+  Y  
Sbjct: 151 LCSWNVMVNG----------------YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVK 194

Query: 284 HGQGKKALDLFPMML---SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
             Q ++AL L+ +M    +SR  PN  T    + A +    +  G  +   +     +  
Sbjct: 195 KDQPEEALVLYSLMQRVPNSR--PNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA-GLDS 251

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           D   ++ ++D+ G+ G +DEA  + + + VEKD   W +++
Sbjct: 252 DEVLWSSLMDMYGKCGCIDEARNIFDKI-VEKDVVSWTSMI 291


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 315/560 (56%), Gaps = 66/560 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMKERDSVSWSVMVGGF- 133
           +Q+H  +   G L    V   L+ +Y     + +A  LF  N    + +V ++ ++ G+ 
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYA 89

Query: 134 --SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
             S+V D +  F   RE    G++++  T+  +++ C    ++ +G  +H   +K GLD+
Sbjct: 90  LNSRVKDVVVLFCEMREL---GVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDM 146

Query: 192 DQFVCAALVDMYAKCKVIDDAR-------------------------------QLFDQMP 220
           D  V   L+ MY K   ID  R                               +L+ +M 
Sbjct: 147 DSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEME 206

Query: 221 TRD----------LVTWTVMIGANK-------------FLLDVILGTAVIDMYAKCGSID 257
           ++           +++    +GA               F  +  L  A+++MYA+CG++ 
Sbjct: 207 SKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLK 266

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR+IFD M  K+V+SW+A+I  YG HGQG+ A+ LF  M+   + P+   FVS+L ACS
Sbjct: 267 KARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACS 326

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GL  +GL  F  M   + +RP  +HY+CMVDLLGRAGRL+EA +LIESM V  D  LW
Sbjct: 327 HAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALW 386

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           GALLGAC+IH+NV+LAE+A + ++E +P N G+YVLLSNVY  AG  + + ++R LM +R
Sbjct: 387 GALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKR 446

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
           +LKK PG +++E + ++H F  GD  HPQ+ EIY+    L+E   L   +       H+ 
Sbjct: 447 KLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYK---KLNELENLVKDLDGCKKNDHER 503

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
            EE  + ++  HSEKLA+AF L+ T + T I I+KNLR+CGDCH FIK VS I  R  +V
Sbjct: 504 REEY-LNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVV 562

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RDA RFHHF+ G CSC++YW
Sbjct: 563 RDATRFHHFKNGFCSCKEYW 582



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 135/300 (45%), Gaps = 58/300 (19%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           +R G   +++T PF I++C      + G+ +H  V K+G  ++ FV  +L+ MY KC +I
Sbjct: 2   LRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLI 61

Query: 210 DDARQLFDQMPT-------------------------------RDL---VTWTVMIG--- 232
           D+AR+LFD+ P                                R+L   +    M+G   
Sbjct: 62  DNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQ 121

Query: 233 -----------------ANKFLLDV--ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                              KF LD+   +G  ++ MY K G ID  R++FD M +K +I+
Sbjct: 122 PCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLIT 181

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI  Y  +G     L+L+  M S    P+ +T V +L +C+H G +  G  +   M 
Sbjct: 182 WNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKM- 240

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           + F    +      +V++  R G L +A  + + M V K    W A++G   +H   ++A
Sbjct: 241 EGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPV-KSVVSWTAIIGGYGMHGQGEVA 299


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/573 (36%), Positives = 322/573 (56%), Gaps = 64/573 (11%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMK 119
           F + S  S       +Q+H  +  GG  T   V   L+ +Y     + DA  +F  N   
Sbjct: 58  FILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS 117

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            + SV ++ ++ G++  +   +    FR     G+ +DS T+  ++  C   + + +GR 
Sbjct: 118 SQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR-------------------------- 213
           +H   +K GLD +  V  + + MY KC  ++  R                          
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237

Query: 214 -----QLFDQMPTR----------DLVTWTVMIGA-------------NKFLLDVILGTA 245
                +L++QM +            +++    +GA             N F+ +V +  A
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNA 297

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
            I MYA+CG++  AR +FD M  K+++SW+AMI  YG HG G+  L LF  M+   + P+
Sbjct: 298 SISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
              FV +L ACSH+GL ++GL LF +M  ++ + P  +HY+C+VDLLGRAGRLDEA++ I
Sbjct: 358 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 417

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           ESM VE D  +WGALLGAC+IHKNVD+AE+A   ++E +P N G+YVL+SN+Y+++   +
Sbjct: 418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQE 477

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL-SEKLELA 484
            + +IR +M  R  +K PG++++E + ++H F  GD +H Q+EE++RML  L +  +ELA
Sbjct: 478 GIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA 537

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           G     N +  D  EEV       HSE+LAIAFG++ +  GT I ++KNLRVC DCH F+
Sbjct: 538 G-----NMDC-DRGEEVS-STTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFL 590

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K VS I  R  +VRDA+RFH+F+ G CSC+DYW
Sbjct: 591 KQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 167/379 (44%), Gaps = 60/379 (15%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           S  W+V +   +  + F      +R  +R G   D+++ PF++++C      V G+ +H 
Sbjct: 18  STPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 77

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP--TRDLVTWTVMIG---ANKFL 237
            V K G + + FV  AL+ MY KC ++ DAR++F++ P  ++  V +  +I    AN  +
Sbjct: 78  HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137

Query: 238 LD------------------VILGTAVI-----------DMYAKC--GSIDS-------- 258
            D                   +LG   +            ++ +C  G +DS        
Sbjct: 138 TDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSF 197

Query: 259 ------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
                        R +FD M  K +I+W+A+I+ Y  +G     L+L+  M SS V P+ 
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            T VS+L +C+H G  + G  +   + +     P+V      + +  R G L +A  + +
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEV-GKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFD 316

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH-YVLLSNVYANAGRWQ 425
            M V K    W A++G   +H   ++  M    +++R  +  G  +V++ +  +++G   
Sbjct: 317 IMPV-KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 375

Query: 426 DVAKIRDLMTRRRLKKIPG 444
              ++   M +R  K  PG
Sbjct: 376 KGLELFRAM-KREYKLEPG 393


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/476 (40%), Positives = 288/476 (60%), Gaps = 55/476 (11%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D  T+  ++ AC    ++  G+L+H    + GLD +  V  A++DMY KC  I+ A+++F
Sbjct: 10  DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69

Query: 217 DQMPTRDLVTWTVMIGA------------------------------------------- 233
           +++  +D+++WT M+                                             
Sbjct: 70  NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALD 129

Query: 234 ---------NKFLL--DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                    +KF +  D++L TA++DMYAKCGSID A ++F RMR +NV +W+AMI    
Sbjct: 130 QGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLA 189

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            HG G+ A+ LF  M   +++P+ +TF++LL ACSH GLV+EGL +F +M + F + P +
Sbjct: 190 MHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRM 249

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY C+VDLL RA ++D+AL  IE+M ++ +  LW  LLGACR   + DLAE   + ++E
Sbjct: 250 EHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIE 309

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            +P + G YV+LSN+YA   +W    K+R  M  + ++K PG +WIE+   IHQF  GD 
Sbjct: 310 LEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDR 369

Query: 463 THPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
           +H Q+E+IY M+  ++ ++ L  G++P T   L D++EE K  +L+ HSEKLAIA GLI+
Sbjct: 370 SHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLIS 429

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           TP G+ IRI+KNLRVC DCHSF+K  S +  R I+ RD +RFHHF+ G+CSC D+W
Sbjct: 430 TPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/558 (35%), Positives = 305/558 (54%), Gaps = 55/558 (9%)

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           F  +Q+HA  +  G + +  V      +Y+      +A  LF+ M  R+   W+  +   
Sbjct: 75  FAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNA 134

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                     + F EF R G + D  T    + AC D + + +GR +H +V++SG + D 
Sbjct: 135 VLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDV 194

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK-----------FLL---- 238
            V   ++D+Y KCK ++ A  +F+ M  R+ V+W  M+ A +           FL+    
Sbjct: 195 SVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKE 254

Query: 239 ---------------------------------------DVILGTAVIDMYAKCGSIDSA 259
                                                  D+ +G+A++DMY KCGSI+  
Sbjct: 255 GIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDC 314

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
            ++F  M ++N++SW+AMI+ Y + G    A+ LF  M  S  + N +T + +L ACS  
Sbjct: 315 EQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEM-QSEAVANYVTLICVLSACSRG 373

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           G V+ G  +F SM D + + P  +HY C+ D+LGRAG ++ A + ++ M +     +WGA
Sbjct: 374 GAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGA 433

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LL ACR++   +L ++AA +L +  P++ G++VLLSN++A AGRW +   +R  M    +
Sbjct: 434 LLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGI 493

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK  G +W+  +NK+H F   D++H ++ EI  MLV L  +++ AGY+PDTN+ L+D++E
Sbjct: 494 KKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEE 553

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E K+  +  HSEK+A+AFGLIA P G  IRI KNLR+CGDCHS  K +S I  R IIVRD
Sbjct: 554 EEKMTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRD 613

Query: 560 ANRFHHFEGGACSCRDYW 577
            NRFH F    CSCRD+W
Sbjct: 614 NNRFHRFRDSQCSCRDFW 631



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 157/390 (40%), Gaps = 61/390 (15%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  L      R  V+W+ ++ G  +   F +    F +  R  ++ + +T P   +A   
Sbjct: 11  AQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTA 70

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
                 G+ IH I LK G   D+FV  +  DMY+K  +  +A++LFD+MP R++  W   
Sbjct: 71  LCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAY 130

Query: 231 I-----------GANKFL--------------------------LD-------------- 239
           I             +KF+                          LD              
Sbjct: 131 ISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGF 190

Query: 240 ---VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
              V +   +ID+Y KC  ++ A  +F+ M ++N +SW  M+AA   + + +KA  +F M
Sbjct: 191 EGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLM 250

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
                +        S++ A +    +E G R   ++     V  D+   + +VD+ G+ G
Sbjct: 251 GRKEGIELTDYMVSSVISAYAGISGLEFG-RSVHALAVKACVEGDIFVGSALVDMYGKCG 309

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            +++  ++   M  E++   W A++       +VD   MA     E Q +   +YV L  
Sbjct: 310 SIEDCEQVFHEMP-ERNLVSWNAMISGYAHQGDVD---MAMTLFEEMQSEAVANYVTLIC 365

Query: 417 VYANAGRWQDVAKIRDLMT--RRRLKKIPG 444
           V +   R   V    ++    R R +  PG
Sbjct: 366 VLSACSRGGAVKLGNEIFESMRDRYRIEPG 395


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 312/574 (54%), Gaps = 92/574 (16%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I    ++  YA  K L  A   F+ M ER  VSW+ M+ G+++          F E +
Sbjct: 193 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMV 252

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI- 209
             G++ D  T   VI AC  R D  +   +   + +  + ++ FV  AL+DMYAKC  I 
Sbjct: 253 NAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIG 312

Query: 210 -------------------------------DDARQLFDQMPTRDLVTWTV--------- 229
                                          D AR+LF+ MP R++VTW           
Sbjct: 313 AARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNG 372

Query: 230 -----------MIGANKFLLDVILGTAVID------------------------------ 248
                      MI A K   D +   +VI                               
Sbjct: 373 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 432

Query: 249 -----MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                MY++CGS++ A+ +F  M  ++V+S++ +I+ +  HG G +A++L   M    + 
Sbjct: 433 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIE 492

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+R+TF+ +L ACSH GL+EEG ++F S+ D     P + HY CMVDLLGR G L++A +
Sbjct: 493 PDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKR 547

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
            +E M +E   G++G+LL A RIHK V+L E+AA  L E +P N G+++LLSN+YA+AGR
Sbjct: 548 TMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGR 607

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W+DV +IR+ M +  +KK  GW+W+E   K+H+F V D +H +S++IY++L+ L +K+  
Sbjct: 608 WKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMRE 667

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
           AGYI D +  L DV+EE K   + +HSEKLAI + L+ +  G  IR++KNLRVC DCH+ 
Sbjct: 668 AGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTA 727

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IK +S +  RVIIVRD NRFH F  G CSC+DYW
Sbjct: 728 IKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 168/352 (47%), Gaps = 28/352 (7%)

Query: 72  NIFQIRQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           N   +RQ+HAQI+       N  VA  + +   L       H LFN     +   ++ M+
Sbjct: 13  NFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSML 72

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             +S + D       F     CG++ D++  P +I++  +      G   H  VLK G  
Sbjct: 73  RFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNG-----GIGFHAHVLKLGHG 127

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMP--TRDLVTWTVMI---------GANKFLLD 239
            D FV  A++DMYA+   I  AR++FD++P   R +  W  M+         G  ++L D
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 240 ------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                 VI  TA++  YAK   +++AR  FD M +++V+SW+AM++ Y  +G  ++ L L
Sbjct: 188 VMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRL 247

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M+++ + P+  T+V+++ ACS  G       L  ++     ++ +    T ++D+  
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQK-QIQLNCFVRTALLDMYA 306

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           + G +  A ++ + +   ++   W A++ A     N+D    +A+ L    P
Sbjct: 307 KCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLD----SARELFNTMP 354


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/477 (42%), Positives = 284/477 (59%), Gaps = 48/477 (10%)

Query: 102 YALHKALTDAHALFNGMK-ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           Y   K +  A A+F  M   ++ V+W+ M+ G+ + +   +  + FR  +  G++ +S  
Sbjct: 227 YMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L   +  C +   + +GR IH IV KS L                C              
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTL----------------CN------------- 317

Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                             DV   T++I MY KCG +  A ++F+ M++K+V++W+AMI+ 
Sbjct: 318 ------------------DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 359

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           Y  HG   KAL LF  M+ +++ P+ ITFV++L AC+H GLV  G+  F SM  D+ V P
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
              HYTCMVDLLGRAG+L+EALKLI SM       ++G LLGACR+HKNV+LAE AA+ L
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKL 479

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           L+   QN   YV L+N+YA+  RW+DVA++R  M    + K+PG++WIE+ NK+H F   
Sbjct: 480 LQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSS 539

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D  HP+ + I++ L  L +K++LAGY P+  F LH+V+EE K   L  HSEKLA+AFG I
Sbjct: 540 DRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCI 599

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             P+G+ I++ KNLR+CGDCH  IK +S I +R IIVRD  RFHHF+ G+CSC DYW
Sbjct: 600 KLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 133/314 (42%), Gaps = 28/314 (8%)

Query: 82  QIVAGGTLTNLIVANKLLY-IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFI 140
           ++  G    N I  N LL  I      + +AH LF+ + E D+ S+++M+  + +  +  
Sbjct: 82  RVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-- 139

Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
             FE  + F       D+ +   +I     R ++   R +      S ++ ++    A++
Sbjct: 140 --FEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL----FYSMMEKNEVSWNAMI 193

Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
             Y +C  ++ A   F   P R +V WT MI                  Y K   ++ A 
Sbjct: 194 SGYIECGDLEKASHFFKVAPVRGVVAWTAMITG----------------YMKAKKVELAE 237

Query: 261 EIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
            +F  M   KN+++W+AMI+ Y  + + +  L LF  ML   + PN     S L  CS  
Sbjct: 238 AMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL 297

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
             ++ G R    +     +  DV   T ++ +  + G L +A KL E M  +KD   W A
Sbjct: 298 SALQLG-RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNA 355

Query: 380 LLGACRIHKNVDLA 393
           ++     H N D A
Sbjct: 356 MISGYAQHGNADKA 369



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 38/255 (14%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D F    ++  Y +    + A+  FD+MP +D  +W  MI                  YA
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITG----------------YA 166

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR--ITF 309
           + G ++ ARE+F  M +KN +SW+AMI+ Y   G  +KA   F      +V P R  + +
Sbjct: 167 RRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFF------KVAPVRGVVAW 220

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            +++        VE    L  +M+ D  V  ++  +  M+       R ++ LKL  +M 
Sbjct: 221 TAMITGYMKAKKVE----LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML 276

Query: 370 VE----KDEGLWGALLGACRIHK---NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            E       GL  ALLG   +        + ++ +KS L     +      L ++Y   G
Sbjct: 277 EEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL---CNDVTALTSLISMYCKCG 333

Query: 423 RWQDVAKIRDLMTRR 437
              D  K+ ++M ++
Sbjct: 334 ELGDAWKLFEVMKKK 348



 Score = 38.9 bits (89), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 17/142 (11%)

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--- 302
           +I    + G ID A  +F  MR KN I+W++++           + D   MM + ++   
Sbjct: 67  IIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGI--------SKDPSRMMEAHQLFDE 118

Query: 303 LPNRITF-VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +P   TF  +++ +C    +  E  + F   +D    + D   +  M+    R G +++A
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSF---FDRMPFK-DAASWNTMITGYARRGEMEKA 174

Query: 362 LKLIESMSVEKDEGLWGALLGA 383
            +L  SM +EK+E  W A++  
Sbjct: 175 RELFYSM-MEKNEVSWNAMISG 195


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 311/570 (54%), Gaps = 55/570 (9%)

Query: 63   FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            F ++L +C N+ +++ VHA ++      NLI+ N L+ +Y     + +A  +   M ERD
Sbjct: 556  FTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERD 615

Query: 123  SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM-GRLIH 181
             V+W+ ++GG +   D     + F    R G+  +  T+  ++  C     ++  G  IH
Sbjct: 616  VVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIH 675

Query: 182  DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
              ++ +G ++D +V ++L+ MYA+C  ++ +  +FD +  ++  TW  +  A        
Sbjct: 676  AHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGE 735

Query: 234  ----------------NKFLLDVILGT------------------------------AVI 247
                            ++F   V L T                              A +
Sbjct: 736  EALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATM 795

Query: 248  DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            DMY KCG ID    I    + ++  SW+ +I+A   HG  ++A + F  ML   + P+ +
Sbjct: 796  DMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHV 855

Query: 308  TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            TFVSLL ACSH GLV+EGL  FSSM  +F V   ++H  C++DLLGR+GRL EA   I+ 
Sbjct: 856  TFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDK 915

Query: 368  MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
            M V  +E +W +LL AC++H N++L   AA  L E    +   YVL SNV A+  RW DV
Sbjct: 916  MPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDV 975

Query: 428  AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
              +R  M  + LKK P  +WI+++NK+  F +GD  HPQS +IY  L  L +     G++
Sbjct: 976  ENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHM 1035

Query: 488  PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
            PDT++ L D DEE K  NL++HSE++A+AFGLI + EG+ +RI KNLRVCGDCHS  K V
Sbjct: 1036 PDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKLV 1095

Query: 548  SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            S I  R I+VRD+ RFHHF GG CSC DYW
Sbjct: 1096 SKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 163/359 (45%), Gaps = 55/359 (15%)

Query: 78  QVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           Q+   ++  G  T+ + VAN L+ ++  + ++ +A  +FN M+ERD++SW+ ++   +  
Sbjct: 371 QILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHN 430

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F      F    R   + D  T+  ++ AC   + +  GR +H ++ KSGL+ +  VC
Sbjct: 431 GRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVC 490

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            +L+ MYA+    +DA  +F  MP RDL++W  M+ +                       
Sbjct: 491 NSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKA 550

Query: 234 ----------------------NKFLL------DVILGTAVIDMYAKCGSIDSAREIFDR 265
                                 + F++      ++I+G  ++ MY K G +D A+++   
Sbjct: 551 MNYVTFTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKI 610

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-SHTGLVEE 324
           M +++V++W+A+I  +         +  F +M    +L N IT V+LL  C S   L++ 
Sbjct: 611 MPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKH 670

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           G+ + + +        D    + ++ +  + G L+ +  + + ++  K+   W A+  A
Sbjct: 671 GMPIHAHIVVA-GFELDTYVQSSLITMYAQCGDLNTSSYIFDVLA-NKNSSTWNAIFSA 727



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 178/422 (42%), Gaps = 68/422 (16%)

Query: 56  RSVDPK---FFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           R   PK     IS+LL    S +++   R +H  I   G  +N+ V N LL +YA   + 
Sbjct: 444 RRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSS 503

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            DA  +F+ M  RD +SW+ M+    +   + +      E ++    ++  T    + AC
Sbjct: 504 EDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC 563

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
            + + +   +++H  V+   +  +  +   LV MY K  ++D+A+++   MP RD+VTW 
Sbjct: 564 YNLEKL---KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWN 620

Query: 229 VMIG------------------------ANKFLLDVILGT-------------------- 244
            +IG                        +N   +  +LGT                    
Sbjct: 621 ALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVV 680

Query: 245 -----------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                      ++I MYA+CG ++++  IFD +  KN  +W+A+ +A  ++G G++AL  
Sbjct: 681 AGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKF 740

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
              M +  V  ++ +F   L    +  +++EG +L S +        D       +D+ G
Sbjct: 741 IARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWII-KLGFELDEYVLNATMDMYG 799

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           + G +D+  +++    +      W  L+ A   H     A  A   +L+   + P H   
Sbjct: 800 KCGEIDDVFRILPIPKIRSKRS-WNILISALARHGFFRQATEAFHEMLDLGLK-PDHVTF 857

Query: 414 LS 415
           +S
Sbjct: 858 VS 859



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 162/383 (42%), Gaps = 61/383 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H  +V  G ++N+ V   LL+ Y  H ++++A+ LF  ++E + VSW+ ++  ++  
Sbjct: 269 RQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADN 328

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF-V 195
                    +R     G+     T+  VIR C    D  MG  I   V+KSGLD     V
Sbjct: 329 GHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSV 388

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--GANKFLLDVILG---------- 243
             +L+ M+     +++A ++F+ M  RD ++W  +I   A+    +  LG          
Sbjct: 389 ANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP 448

Query: 244 ----TAVIDMYAKCGSIDSARE-------IFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                 +  +   CGS    +        I     + NV   +++++ Y   G  + A  
Sbjct: 449 KTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAEL 508

Query: 293 LFPM-------------------------------MLSSRVLPNRITFVSLLYACSHTGL 321
           +F                                 ML +R   N +TF + L AC +   
Sbjct: 509 VFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNL-- 566

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             E L++  +    FAV  ++     +V + G+ G +DEA K+ + M  E+D   W AL+
Sbjct: 567 --EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMP-ERDVVTWNALI 623

Query: 382 GACRIHKNVDLAEMAAKSLLERQ 404
           G     K+ + A + A +L+ R+
Sbjct: 624 GGHADDKDPN-ATIQAFNLMRRE 645



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 158/364 (43%), Gaps = 60/364 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +HA  V      N    N L+ +Y+   ++  A  +F+ M +R+  SW+ M+ GF +V
Sbjct: 167 KALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRV 226

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM--GRLIHDIVLKSGLDIDQF 194
             +    + F      G+   SY +  ++ AC DR   +    R IH  V+K GL  + F
Sbjct: 227 GWYHKAMQFFCHMFENGVTPSSYVIASMVTAC-DRSGCMTEGARQIHGYVVKCGLMSNVF 285

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDV-------- 240
           V  +L+  Y     + +A +LF+++   ++V+WT ++      G  K +L++        
Sbjct: 286 VGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNG 345

Query: 241 --------------------------ILG---------------TAVIDMYAKCGSIDSA 259
                                     ILG                ++I M+    S++ A
Sbjct: 346 LICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEA 405

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             +F+ M++++ ISW+++I A  ++G+ +++L  F  M  +    + IT  +LL AC   
Sbjct: 406 SRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSA 465

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
             ++ G R    +     +  +V     ++ +  +AG  ++A  +  +M   +D   W +
Sbjct: 466 QHLKWG-RGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPA-RDLISWNS 523

Query: 380 LLGA 383
           ++ +
Sbjct: 524 MMAS 527



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/313 (17%), Positives = 116/313 (37%), Gaps = 58/313 (18%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--- 232
           +G+ +H + +K  +  + F    LV+MY+K   I  A+ +FD+M  R+  +W  MI    
Sbjct: 165 VGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFV 224

Query: 233 -------ANKFLLDVILGTAVIDMY--------------------------AKCG----- 254
                  A +F   +         Y                           KCG     
Sbjct: 225 RVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNV 284

Query: 255 --------------SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                         S+  A ++F+ + + N++SW++++  Y  +G  K+ L+++  +  +
Sbjct: 285 FVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHN 344

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            ++    T  +++  C   G    G ++   +         V     ++ + G    ++E
Sbjct: 345 GLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEE 404

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A ++  +M  E+D   W +++ A     N    E        R+      Y+ +S +   
Sbjct: 405 ASRVFNNMQ-ERDTISWNSIITASA--HNGRFEESLGHFFWMRRTHPKTDYITISALLPA 461

Query: 421 AGRWQDVAKIRDL 433
            G  Q +   R L
Sbjct: 462 CGSAQHLKWGRGL 474


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/603 (34%), Positives = 329/603 (54%), Gaps = 69/603 (11%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANK 97
           PR  ++   D   +     KF +SS+ S      N+   +Q+H+  +  G + +  V   
Sbjct: 250 PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECS 307

Query: 98  LLYIYALHKA---LTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCG 153
           L+ +YA   A   + D   +F+ M++   +SW+ ++ G+ K  +        F E I  G
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367

Query: 154 -MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
            ++ + +T     +AC +  D  +G+ +     K GL  +  V  +++ M+ K   ++DA
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427

Query: 213 RQLFDQMPTRDLVTWTVMI------------------------GANKFLLDVILG----- 243
           ++ F+ +  ++LV++   +                        G + F    +L      
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 244 -------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                                     A+I MY+KCGSID+A  +F+ M  +NVISW++MI
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
             +  HG   + L+ F  M+   V PN +T+V++L ACSH GLV EG R F+SM++D  +
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
           +P ++HY CMVDLL RAG L +A + I +M  + D  +W   LGACR+H N +L ++AA+
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            +LE  P  P  Y+ LSN+YA AG+W++  ++R  M  R L K  G +WIEV +KIH+F 
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN----LYSHSEKLA 514
           VGD+ HP + +IY  L  L  +++  GY+PDT+  LH ++EE         LY HSEK+A
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           +AFGLI+T +   +R+ KNLRVCGDCH+ +K++S ++ R I++RD NRFHHF+ G CSC 
Sbjct: 788 VAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCN 847

Query: 575 DYW 577
           DYW
Sbjct: 848 DYW 850



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 191/415 (46%), Gaps = 69/415 (16%)

Query: 56  RSVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           R +D   F S L SC   R+    + VHA+++      + ++ N L+ +Y+       A 
Sbjct: 58  RPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE 117

Query: 113 ALFNGMK---ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            +F  M+   +RD VSWS M+  +      ++  + F EF+  G+  + Y    VIRAC 
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS 177

Query: 170 DRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCK-VIDDARQLFDQMPTRDLVTW 227
           +   + +GR+    ++K+G  + D  V  +L+DM+ K +   ++A ++FD+M   ++VTW
Sbjct: 178 NSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237

Query: 228 TVMIG----------ANKFLLDVILG---------------------------------- 243
           T+MI           A +F LD++L                                   
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIR 297

Query: 244 --------TAVIDMYAKC---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ-GKKAL 291
                    +++DMYAKC   GS+D  R++FDRM   +V+SW+A+I  Y  +     +A+
Sbjct: 298 SGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAI 357

Query: 292 DLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           +LF  M++   V PN  TF S   AC +      G ++    +    +  +      ++ 
Sbjct: 358 NLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVIS 416

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQ 404
           +  ++ R+++A +  ES+S EK+   +   L G CR + N + A      + ER+
Sbjct: 417 MFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCR-NLNFEQAFKLLSEITERE 469


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 318/560 (56%), Gaps = 60/560 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKERDSVSWSVMVGG 132
           + +QVHAQ++      N   A+ L+   AL    ++  A ++F  + +  +  ++ M+ G
Sbjct: 3   EFKQVHAQVL---KWENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRG 59

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           +  V +  N    + E +  G++ D++T P + +AC   + I  G  IH  + K GL+ D
Sbjct: 60  YVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGD 119

Query: 193 QFVCAALVDMYAK-------CKVID------------------------DARQLFDQMPT 221
            FV  +L++MY K       C V +                        +   +F +M  
Sbjct: 120 LFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSR 179

Query: 222 R-----------DLVTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSID 257
                        +++    +GA             N   ++VI+ T++IDMY KCG I+
Sbjct: 180 EGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIE 239

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
               +F RM +KN +S+S MI     HG+G +AL +F  ML   + P+ + ++ +L AC+
Sbjct: 240 KGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACN 299

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GLV+EGL+ F+ M  +  + P ++HY C+V L+GRAG L++AL+ I SM ++ +E +W
Sbjct: 300 HAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVW 359

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LL AC+ H N+++ E+AAKSL E    NPG YV+LSN+YA A RW+DVAKIR  M R+
Sbjct: 360 RGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARK 419

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
              + PG++ ++VE KI++F   D +HPQ + +Y M+  +  +L+  GY PDT+  L DV
Sbjct: 420 GFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDV 479

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           DEE K   L +HS+KLA+AF LI T +G  IRI +NLR+C DCH++ K +S I +R I V
Sbjct: 480 DEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITV 539

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD NRFHHF+ G CSCRDYW
Sbjct: 540 RDRNRFHHFKDGTCSCRDYW 559


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/568 (36%), Positives = 309/568 (54%), Gaps = 57/568 (10%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C +  +I    Q+H+  +  G  +++ V+  L+ +Y+ +  L  A  + + ++E+D 
Sbjct: 352 LRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDV 411

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+ G+ +        ETF+E   CG+  D+  L   I AC   K +  G  IH  
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHAR 471

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------- 232
           V  SG   D  +   LV +YA+C +  +A   F+ +  ++ +TW  +I            
Sbjct: 472 VYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEA 531

Query: 233 ------------------------ANKFLLDVILG-------------------TAVIDM 249
                                   A+  L D+  G                    A+I +
Sbjct: 532 LKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISL 591

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y KCGSI+ A+  F  M ++N +SW+ +I     HG+G +ALDLF  M    + P+ +TF
Sbjct: 592 YGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTF 651

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           V +L ACSH GLVEEGL  F SM ++  + P   HY C+VD+LGRAG+LD A + +E M 
Sbjct: 652 VGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMP 711

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           +  D  +W  LL AC++HKN+++ E AAK LLE +P +   YVLLSN YA  G+W    +
Sbjct: 712 IPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQ 771

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           IR +M  R ++K PG +WIEV+N +H F VGD  HP +++IY  L  L+++L   GY  +
Sbjct: 772 IRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQE 831

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
                H+ ++E K    + HSEKLA+AFGL++ P    +R++KNLRVC DCH+++K  S 
Sbjct: 832 NYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSG 891

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  R I++RD  RFHHF  G+CSC DYW
Sbjct: 892 VMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 182/407 (44%), Gaps = 63/407 (15%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSC---RNIFQI-RQVHAQIVAGGTL 89
           G+ QN +     +++  +   +  V   + +SS+LS      +FQ+ R +H Q+   G  
Sbjct: 117 GYAQNGLGEEA-VRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFF 175

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           +   V N L+ +Y   ++   A  +F  M   DSV+++ ++ G ++          F E 
Sbjct: 176 SETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEM 235

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
              G+  DS T+  ++ AC    D+  G+ +H  +LK+G+ +D  +  +L+D+Y K   I
Sbjct: 236 QLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDI 295

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGT- 244
           ++A Q+FD     ++V W +M+ A                        NKF    +L T 
Sbjct: 296 EEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTC 355

Query: 245 -----------------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                         +IDMY+K G +D A+ I D + +K+V+SW+
Sbjct: 356 THTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWT 415

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           +MIA Y  H   K+AL+ F  M +  + P+ I   S + AC+    V +G ++ + ++  
Sbjct: 416 SMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVS 475

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL-WGALL 381
                DV  +  +V L  R G   EA    E  ++E  EG+ W  L+
Sbjct: 476 -GYSADVSIWNGLVYLYARCGISKEAFSSFE--AIEHKEGITWNGLI 519



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 187/423 (44%), Gaps = 71/423 (16%)

Query: 63  FISSLLSCRNIFQ----IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           F  +L +CR   +    + ++HA+ +  G     I+ N L+ +YA    +  A  +F  +
Sbjct: 44  FACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEEL 103

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
             RD+VSW  ++ G+++          +RE  R G+    Y L  ++ AC   +   +GR
Sbjct: 104 SVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGR 163

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
           LIH  V K G   + FV  AL+ +Y +C+    A ++F  M   D VT+  +I       
Sbjct: 164 LIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCG 223

Query: 234 -------------------------------------------NKFLL------DVILGT 244
                                                      + +LL      D I+  
Sbjct: 224 HGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEG 283

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           +++D+Y K G I+ A +IFD   + NV+ W+ M+ AYG      K+ D+F  ML++ V P
Sbjct: 284 SLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRP 343

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N+ T+  +L  C+HTG +  G ++ S    +   + D+     ++D+  + G LD+A ++
Sbjct: 344 NKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN-GFQSDMYVSGVLIDMYSKYGWLDKAQRI 402

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-----PQNPGHYVLLSNVYA 419
           ++ M  EKD   W +++     H   +  + A ++  E Q     P N G   L S + A
Sbjct: 403 LD-MIEEKDVVSWTSMIAGYVQH---EFCKEALETFKEMQACGIWPDNIG---LASAISA 455

Query: 420 NAG 422
            AG
Sbjct: 456 CAG 458


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/588 (35%), Positives = 316/588 (53%), Gaps = 88/588 (14%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++H+QI+  G   + +++N LL +Y     +  A  LF+ M  RD VSW+ ++   +K  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 138 DFINCFETFRE-FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                       F   G+Q D +    ++RAC     + +G+ +H   + S    D+ V 
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVK 143

Query: 197 AALVDMYAKCKVIDDARQLFD-------------------------------QMPTRDLV 225
           ++L+DMY KC   DDAR +FD                               Q P R+L 
Sbjct: 144 SSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 226 TWTVMIG--------------------------------------ANKFLLDV------- 240
           +WT +I                                       AN  LL++       
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 241 ----------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                      +  A++DMYAKC  I +A++IF RM +K+VISW+++I     HG+ ++A
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEA 323

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L L+  M+ SR+ PN +TFV LLYACSH GLV  G  LF SM  D+++ P ++HYTC++D
Sbjct: 324 LTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLD 383

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LL R+G LDEA  L++ +  + DE  W +LL AC  H N+++    A  +L+ +P++P  
Sbjct: 384 LLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPST 443

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST-HPQSEE 469
           Y+LLSNVYA A  W  V+K+R LM+   ++K PG++ I+       F  G+S  HP   E
Sbjct: 444 YILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNE 503

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           I  +L  L  ++   GY+P+T+F L+D++++ K   L+ HSE+LA+A+GL+    GT IR
Sbjct: 504 ICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIR 563

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLR+CGDCH+ +K +S I +R I+VRDA R+HHF+ G CSC D+W
Sbjct: 564 IVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 64/221 (28%)

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           ++ C  R+       +H  ++K+G D    +   L+D+Y KC +I  A QLFD+MP RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 225 VTWTVMIGAN-------------------------------------------------- 234
           V+W  ++ A+                                                  
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 235 KFLL-----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           +F+L     D ++ +++IDMY KCG  D AR +FD +  KN +SW++MI+ Y   G+  +
Sbjct: 130 RFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           A+DLF   L + V  N  ++ +L+     +GL++ G  ++S
Sbjct: 190 AMDLF---LQAPV-RNLFSWTALI-----SGLIQSGHGIYS 221


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/556 (35%), Positives = 317/556 (57%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +HA+++      +  + ++L+  Y    +  DA  LF+ M  +DS+SW+ +V GFS++
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRI 130

Query: 137 ADFINCFETFREF-IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            D  NC   F         + +  TL  VI AC   K    G  +H   +K G++++  V
Sbjct: 131 GDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKV 190

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKF-------- 236
             A ++MY K   +D A +LF  +P +++V+W  M+             N F        
Sbjct: 191 VNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGL 250

Query: 237 ---------------------LLDVILG--------------TAVIDMYAKCGSIDSARE 261
                                L++ I G              T ++++Y+K G ++ + +
Sbjct: 251 FPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHK 310

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  + + + ++ +AM+A Y  HG GK+A++ F   +   + P+ +TF  LL ACSH+GL
Sbjct: 311 VFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGL 370

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V +G   F  M D + V+P + HY+CMVDLLGR G L++A +LI+SM +E + G+WGALL
Sbjct: 371 VMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALL 430

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+++N++L + AA++L+   P +P +Y++LSN+Y+ AG W D +K+R LM  +   +
Sbjct: 431 GACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIR 490

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G ++IE  NKIH+F V D +HP S++I+R L  +  K++  G++ +T   LHDVDEEV
Sbjct: 491 NAGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEV 550

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   +  HSEK+A+AFGL+ +     + I+KNLR+C DCH+  K VS I +R II+RD+ 
Sbjct: 551 KTDMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSK 610

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 611 RFHHFSDGLCSCADYW 626



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 6/172 (3%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +  +H  I   G   N+ +A  LL +Y+    L  +H +F  + + D V+ + M+ G++ 
Sbjct: 273 VEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALTAMLAGYAM 332

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV---LKSGLDID 192
                   E F+  +R GM+ D  T   ++ AC     ++ G+    I+    +    +D
Sbjct: 333 HGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIMSDFYRVQPQLD 392

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILG 243
            + C  +VD+  +C +++DA +L   MP   +   W  ++GA +   ++ LG
Sbjct: 393 HYSC--MVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGACRVYRNINLG 442


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/517 (39%), Positives = 309/517 (59%), Gaps = 20/517 (3%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +S+    RN+   RQV + I       NL +AN +L +Y    ++ DA  LF+ M+E+D+
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI-HD 182
           V+W+ M+ G++   D+    E  RE +    Q D      +I A           ++ H+
Sbjct: 299 VTWTTMLDGYAISEDY----EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHE 354

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVI 241
           + L+  + ++Q     LV   + C           Q+   +L  W    I  +   ++  
Sbjct: 355 LQLQKNMKLNQIT---LVSTLSACA----------QVGALELGRWIHSYIKKHGIRMNFH 401

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           + +A+I MY+KCG ++ +RE+F+ + +++V  WSAMI     HG G +A+D+F  M  + 
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN +TF ++  ACSHTGLV+E   LF  M  ++ + P+ KHY C+VD+LGR+G L++A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           +K IE+M +     +WGALLGAC+IH N++LAEMA   LLE +P+N G +VLLSN+YA  
Sbjct: 522 VKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKL 581

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           G+W++V+++R  M    LKK PG + IE++  IH+F  GD+ HP SE++Y  L  + EKL
Sbjct: 582 GKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKL 641

Query: 482 ELAGYIPDTNFELHDV-DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +  GY P+ +  L  + +EE+K  +L  HSEKLAI +GLI+T     IR++KNLRVCGDC
Sbjct: 642 KSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDC 701

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           HS  K +S +  R IIVRD  RFHHF  G CSC D+W
Sbjct: 702 HSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 169/327 (51%), Gaps = 19/327 (5%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F I +     ++   + +H   V     +++ VAN L++ Y     L  A  +F  +KE+
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D VSW+ M+ GF +        E F++     ++    T+  V+ AC   +++  GR + 
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
             + ++ ++++  +  A++DMY KC  I+DA++LFD M  +D VTWT M           
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM----------- 304

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSS 300
                +D YA     ++ARE+ + M QK++++W+A+I+AY  +G+  +AL +F  + L  
Sbjct: 305 -----LDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            +  N+IT VS L AC+  G +E G R   S      +R +    + ++ +  + G L++
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEK 418

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIH 387
           + ++  S+  ++D  +W A++G   +H
Sbjct: 419 SREVFNSVE-KRDVFVWSAMIGGLAMH 444



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 165/368 (44%), Gaps = 57/368 (15%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101
           PR P    P+ Q T + +    IS +  C ++ Q++Q H  ++  GT ++   A+KL  +
Sbjct: 13  PRHPNFSNPN-QPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAM 71

Query: 102 YALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDS 158
            AL    +L  A  +F+ + + +S +W+ ++  ++   D +     F + +       + 
Sbjct: 72  AALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNK 131

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           YT PF+I+A  +   + +G+ +H + +KS +  D FV  +L+  Y  C  +D A ++F  
Sbjct: 132 YTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 191

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           +  +D+V+W  MI                  + + GS D A E+F +M  ++V +     
Sbjct: 192 IKEKDVVSWNSMING----------------FVQKGSPDKALELFKKMESEDVKA----- 230

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
                                     + +T V +L AC+    +E G R   S  ++  V
Sbjct: 231 --------------------------SHVTMVGVLSACAKIRNLEFG-RQVCSYIEENRV 263

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
             ++     M+D+  + G +++A +L ++M  EKD   W  +L    I ++ +    AA+
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE----AAR 318

Query: 399 SLLERQPQ 406
            +L   PQ
Sbjct: 319 EVLNSMPQ 326


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 314/576 (54%), Gaps = 56/576 (9%)

Query: 58  VDPKFFISSLLSCRNI---FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D    +S L +C  +   F  R VH   V  G ++   +AN LL +Y+        + +
Sbjct: 295 LDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKI 354

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M +++ VSW+ M+  +++   +      F+E    G + D + +   + A    + +
Sbjct: 355 FRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELL 414

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-- 232
             G+ +H   +++G++    V  AL++MY KC  +++A+ +FD + ++D+++W  +IG  
Sbjct: 415 KHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGY 474

Query: 233 -----ANK----------------------------------------------FLLDVI 241
                AN+                                              +L D  
Sbjct: 475 SRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDF 534

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  A+IDMY KCG++  AR +FDR+  KN+ISW+ M+A YG HG+G+ A+ LF  M  S 
Sbjct: 535 VANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSG 594

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+  +F ++LYACSH+GL +EG R F +M  +  + P +KHYTCMVDLL   G L EA
Sbjct: 595 IAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEA 654

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            + I+SM +E D  +W +LL  CRIH+NV LAE  A+ + E +P+N G+YVLL+N+YA A
Sbjct: 655 YEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEA 714

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            RW+ V K+++ +  R L++  G +WIE + K+H F   +  HPQ   I   L  +++++
Sbjct: 715 ERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRM 774

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  G+ P   + L   D  V    L  HS KLA+AFG++   EG  IR+ KN RVC  CH
Sbjct: 775 QEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCH 834

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
              K +S +  R II+RD+NRFHHFE G CSCR YW
Sbjct: 835 EAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 178/466 (38%), Gaps = 94/466 (20%)

Query: 62  FFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           + IS +L C     +I     VH  +   G  +   V N L+  YA      DA  +F+G
Sbjct: 197 YTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDG 256

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  RD +SW+ M+ G +    +    E F      G +LDS TL  V+ AC +   + +G
Sbjct: 257 MPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLG 316

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
           R++H   +K+G      +   L+DMY+ C       ++F  M  +++V+WT MI      
Sbjct: 317 RVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRA 376

Query: 232 -------------GANKFLLDVILGTAVIDMYA--------------------------- 251
                        G      D+   T+ +  +A                           
Sbjct: 377 GLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVT 436

Query: 252 --------KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                   KCG+++ A+ IFD +  K++ISW+ +I  Y  +    +A  LF  ML  ++ 
Sbjct: 437 NALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML-LQLR 495

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFS------SMWDDFAVRPDVKHY------------ 345
           PN +T   +L A +    +E G  + +       + DDF     +  Y            
Sbjct: 496 PNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRL 555

Query: 346 ------------TCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACRIHKNV 390
                       T MV   G  GR  +A+ L E M V     D   + A+L AC      
Sbjct: 556 FDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLR 615

Query: 391 DLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRWQDVAKIRDLM 434
           D       ++ +     P   HY  + ++  N G  ++  +  D M
Sbjct: 616 DEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSM 661



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 145/350 (41%), Gaps = 65/350 (18%)

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVS-WSVMVGGFSKVADFINCFETFREFIR 151
           ++  KL+ +Y     L +A  +F+ M +   V  W+ ++ G++K  D       FR+   
Sbjct: 130 VLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHC 189

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
           CG++ D+YT+  V++       I  G ++H ++ K G      V  AL+  YAK     D
Sbjct: 190 CGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKD 249

Query: 212 ARQLFDQMPTRDLVTWTVMIGA-------------------------NKFLLDVI----- 241
           A  +FD MP RD+++W  MI                           +  LL V+     
Sbjct: 250 AILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAE 309

Query: 242 ------------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                                   L   ++DMY+ C    S  +IF  M QKNV+SW+AM
Sbjct: 310 LHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAM 369

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I +Y   G   K   LF  M      P+     S L+A +   L++ G  +       +A
Sbjct: 370 ITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHG-----YA 424

Query: 338 VRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +R  ++        ++++  + G ++EA KLI    V KD   W  L+G 
Sbjct: 425 IRNGMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTLIGG 473



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 69/304 (22%), Positives = 113/304 (37%), Gaps = 88/304 (28%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD---IDQFVCAALVDMYAKCKVIDDA 212
           +D  +   V++ C + + +  G+  H +V  S L    +D  +   LV MY KC  +++A
Sbjct: 89  VDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENA 148

Query: 213 RQLFDQMP-TRDLVTWTVMIGAN----------------------------KFLLDVILG 243
           R++FD+MP   D+  WT ++                                 +L  I G
Sbjct: 149 RRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAG 208

Query: 244 TAVID--------------------------MYAKCGSIDSAREIFDRMRQKNVISWSAM 277
              I+                           YAK      A  +FD M  ++VISW++M
Sbjct: 209 LGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSM 268

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC--------------------- 316
           I+    +G   KA++LF  M       +  T +S+L AC                     
Sbjct: 269 ISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGF 328

Query: 317 -SHTGLVEEGLRLFSSMWD--------DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            S T L    L ++S+  D           V+ +V  +T M+    RAG  D+   L + 
Sbjct: 329 ISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQE 388

Query: 368 MSVE 371
           M +E
Sbjct: 389 MGLE 392



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 3/148 (2%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPM 296
           +D +LG  ++ MY KCG +++AR +FD M Q  +V  W+A+++ Y   G  ++ + LF  
Sbjct: 127 MDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRK 186

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    V P+  T   +L   +  G +E+G  +   + +             ++    ++ 
Sbjct: 187 MHCCGVRPDAYTISCVLKCIAGLGSIEDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSN 245

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGAC 384
           R  +A+ + + M   +D   W +++  C
Sbjct: 246 RTKDAILVFDGMP-HRDVISWNSMISGC 272


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 303/546 (55%), Gaps = 69/546 (12%)

Query: 54  FTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           ++ +      + + + C  I +   +H  ++  G  TN  + N L+ +Y+    +  +  
Sbjct: 316 YSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKR 375

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-------GMQLDSYTLPF--- 163
           +F+ M++RD VSW+ ++  +       +      E  R        G   D   +PF   
Sbjct: 376 IFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPN 435

Query: 164 ------VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
                 V+  C     +  G+ IH   ++                               
Sbjct: 436 SITLMTVLPGCASLSALAKGKEIHAYAIR------------------------------- 464

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                           N     V +G+A++DMYAKCG ++ AR +FD+M  +NVI+W+ +
Sbjct: 465 ----------------NLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVI 508

Query: 278 IAAYGYHGQGKKALDLFPMMLS-----SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           I AYG HG+GK++L+LF  M++       V P  +TF++L  +CSH+G+V+EGL LF  M
Sbjct: 509 IMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKM 568

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE-GLWGALLGACRIHKNVD 391
            ++  + P   HY C+VDL+GRAG+++EA  L+ +M    D+ G W +LLGACRI+ N++
Sbjct: 569 KNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIE 628

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           + E+AA++LL+ QP    HYVLLSN+Y++AG W     +R  M    +KK PG +WIE  
Sbjct: 629 IGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYG 688

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           +++H+F  GD +HPQSE+++  L TLSE+L+  GY+PDT   LHD+DEE K   L  HSE
Sbjct: 689 DEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSE 748

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLAIAFG++ TP GT IR+ KNLRVC DCH+  K +S I  R II+RDA RFHHF+ G C
Sbjct: 749 KLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTC 808

Query: 572 SCRDYW 577
           SC DYW
Sbjct: 809 SCGDYW 814



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 132/308 (42%), Gaps = 61/308 (19%)

Query: 64  ISSLLSCRNIFQIRQVHAQIV--AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           + ++   + ++  +Q+HA +     G+ +++ + N L+ +Y     L DA+ +F+ + ER
Sbjct: 17  LKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITER 76

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC---RDRKDIVMGR 178
           D VSW+ ++    +  ++    + FR  +  G +  S+TL  +  AC   R R  + +G+
Sbjct: 77  DQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGK 136

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----N 234
            IH    + G     F   AL+ MYAK   +DDA+ L      RDLVTW  MI +     
Sbjct: 137 QIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNE 195

Query: 235 KFL------------------------------LDVILGTAVIDMYA------------- 251
           +F+                              LD++     I  YA             
Sbjct: 196 RFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVG 255

Query: 252 --------KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                    CG ++S R +FD +  + +  W+AMIA Y      +KAL LF  M ++  L
Sbjct: 256 SALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGL 315

Query: 304 PNRITFVS 311
            +  T +S
Sbjct: 316 YSNATTMS 323



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/416 (22%), Positives = 166/416 (39%), Gaps = 97/416 (23%)

Query: 59  DPKFF--ISSLLSCRNI------FQIRQVHAQIVAGG---TLTNLIVANKLLYIYALHKA 107
           +P  F  +S  L+C N+      +  +Q+H      G   T +N    N L+ +YA    
Sbjct: 110 EPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSN----NALMAMYAKLGR 165

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L DA +L    ++RD V+W+ M+  FS+   F+      R  +  G++ D  T   V+ A
Sbjct: 166 LDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPA 225

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           C     +  G+ IH   L++   I+  FV +ALVDMY  C  ++  R +FD +  R +  
Sbjct: 226 CSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGL 285

Query: 227 WTVMI--------------------GANKFLLDVILGTAVIDMYAKC------------- 253
           W  MI                     A     +    ++++  Y +C             
Sbjct: 286 WNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYV 345

Query: 254 ----------------------GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                                 G I +++ IFD M  ++++SW+ +I +Y   G+   AL
Sbjct: 346 IKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDAL 405

Query: 292 DLFPMMLSSR----------------VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            L   M                      PN IT +++L  C+    + +G  + +     
Sbjct: 406 LLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHA----- 460

Query: 336 FAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           +A+R      V   + +VD+  + G L+ A ++ + M + ++   W  ++ A  +H
Sbjct: 461 YAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI-RNVITWNVIIMAYGMH 515



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 74/152 (48%), Gaps = 16/152 (10%)

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V +   +++MY KCG +  A ++FDR+ +++ +SW+++I+A     + + A+  F +ML 
Sbjct: 47  VTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLM 106

Query: 300 SRVLPNRITFVSLLYACSH--------TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
               P+  T VS+  ACS+         G    G       W  F+          ++ +
Sbjct: 107 EGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFS-------NNALMAM 159

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             + GRLD+A  L+  +  ++D   W +++ +
Sbjct: 160 YAKLGRLDDAKSLL-VLFEDRDLVTWNSMISS 190


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 320/598 (53%), Gaps = 61/598 (10%)

Query: 41  NPRVPMQMGPDCQF--TRSVDPKFFISSLL-SCRNIFQIR---QVHAQIVAGGTLTNLIV 94
           N R    +   CQ      +  +F +SS+L +C ++  I+   QVH  +V  G    L V
Sbjct: 154 NSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFV 213

Query: 95  ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGM 154
            + L  +Y+    L+DA   F  M  +D+V W+ M+ GF K  DF      + + +   +
Sbjct: 214 GSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDV 273

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
            +D + L   + AC   K    G+ +H  +LK G + + F+  AL DMY+K   +  A  
Sbjct: 274 FIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASN 333

Query: 215 LF----------------------DQM----------------PTRDLVTWTVMIGANK- 235
           +F                      DQ+                P     T  +   AN+ 
Sbjct: 334 VFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQA 393

Query: 236 ----------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                           F  D  + + ++DMY KCG  D + ++FD +   + I+W+ ++ 
Sbjct: 394 KLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVG 453

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +  HG G+ A++ F  M+   + PN +TFV+LL  CSH G+VE+GL  FSSM   + V 
Sbjct: 454 VFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVV 513

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P  +HY+C++DLLGRAG+L EA   I +M  E +   W + LGAC+IH +++ A+ AA  
Sbjct: 514 PKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADK 573

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           L++ +P+N G +VLLSN+YA   +W+DV  +R ++    + K+PG++W+++ NK H F V
Sbjct: 574 LMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGV 633

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
            D +HPQ +EIY  L  L ++++  GY+P T   L D+D+ +K   L+ HSE++A+AF L
Sbjct: 634 EDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAVAFSL 693

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  P G  I + KNLRVC DCHS +K +S +T R IIVRD +RFHHF  G+CSC DYW
Sbjct: 694 LTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 158/366 (43%), Gaps = 57/366 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA ++ GG L N  ++N  L +Y+    L     LF+ M +R+ VSW+ ++ GF+  
Sbjct: 95  KQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHN 154

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           + F     +F +    G     + L  V++AC     I  G  +H +V+K G   + FV 
Sbjct: 155 SRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVG 214

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVILGTAV 246
           + L DMY+KC  + DA + F++MP +D V WT MI           A    + ++     
Sbjct: 215 SNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVF 274

Query: 247 IDMYAKCGSIDSAR----------------------EIF-------------DRMRQKNV 271
           ID +  C ++ +                        E F             D +   NV
Sbjct: 275 IDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNV 334

Query: 272 ----------ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
                     +S +A+I  Y    Q +KAL  F  +    + PN  TF SL+ AC++   
Sbjct: 335 FQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAK 394

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E G +L   +   F  + D    + +VD+ G+ G  D +++L + +    DE  W  L+
Sbjct: 395 LEHGSQLHGQVV-KFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NPDEIAWNTLV 452

Query: 382 GACRIH 387
           G    H
Sbjct: 453 GVFSQH 458



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 100/230 (43%), Gaps = 55/230 (23%)

Query: 143 FETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201
           F   +     G +L D+ T+  +I+     K++  G+ +H ++++ G   + F+    ++
Sbjct: 59  FSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLN 118

Query: 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ANKFL 237
           +Y+KC  +D   +LFD+M  R++V+WT +I                         A +F 
Sbjct: 119 LYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFA 178

Query: 238 LDVIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMR 267
           L  +L                              G+ + DMY+KCG +  A + F+ M 
Sbjct: 179 LSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMP 238

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            K+ + W++MI  +  +G  KKAL  +  M++  V  ++    S L ACS
Sbjct: 239 CKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACS 288



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 91/191 (47%), Gaps = 16/191 (8%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D    A L+  YA+ K ++  +QL              M+     L +  L    +++Y+
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLH------------AMLIRGGCLPNTFLSNHFLNLYS 121

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KCG +D   ++FD+M Q+N++SW+++I  + ++ + ++AL  F  M     +  +    S
Sbjct: 122 KCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSS 181

Query: 312 LLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           +L AC+  G ++ G ++   +    F     V   + + D+  + G L +A K  E M  
Sbjct: 182 VLQACTSLGAIQFGTQVHCLVVKCGFGCELFVG--SNLTDMYSKCGELSDACKAFEEMPC 239

Query: 371 EKDEGLWGALL 381
            KD  LW +++
Sbjct: 240 -KDAVLWTSMI 249


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/556 (37%), Positives = 294/556 (52%), Gaps = 89/556 (16%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACR 169
           A +LF  M +R  VSW+ ++ G+++          F   +    M  D +T+  V+ AC 
Sbjct: 247 ALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACA 306

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR---------------- 213
           +   + +G+ +H  +L+S +     V  AL+ MYAK   +++AR                
Sbjct: 307 NLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISF 366

Query: 214 -----------------QLFDQMPTRDLVTWTVM-IG----------------------- 232
                            ++FD M  RD+V WT M +G                       
Sbjct: 367 TALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPE 426

Query: 233 ANKFLLDVILG------------------------------TAVIDMYAKCGSIDSAREI 262
            N + +  +L                                +++ MYA+ GS+  AR +
Sbjct: 427 PNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRV 486

Query: 263 FDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           FDR+  +K  ++W++MI A   HG G+ A+ LF  ML   V P+RITFV +L AC+H G 
Sbjct: 487 FDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGF 546

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+EG R F  + D   + P++ HY CMVDLL RAG   EA + I+ M VE D   WG+LL
Sbjct: 547 VDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLL 606

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACR+HKN DLAE+AA+ LL   P N G Y  LSNVY+  GRW D AKI      + +KK
Sbjct: 607 SACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKK 666

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G++W  + N++H F   D  HPQ + +YR    + + ++ AG++PD    LHDVD+E+
Sbjct: 667 ETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDEL 726

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLAIAFGL++TPE T +RIMKNLRVC DCH+ IK +S +  R II+RDA 
Sbjct: 727 KEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDAT 786

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC+DYW
Sbjct: 787 RFHHFKDGFCSCKDYW 802



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 17/236 (7%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N LL +YA    L DA A+F  M ERD VSW+VMV G ++V  F    + F + +
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+    +TL  V+ +C   +   +GR +H  V+K GL     V  ++++MY KC   +
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR +F++MP R + +W  M+  +  L                G +D A  +F+ M  + 
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHL----------------GRMDLALSLFENMPDRT 258

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEG 325
           ++SW+A+IA Y  +G   KAL  F  MLS S + P+  T  S+L AC++ G+V  G
Sbjct: 259 IVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIG 314


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 298/541 (55%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            +++ N L+      K + DA  LF  M +RDS++W+ MV G ++    +   + FR   
Sbjct: 211 TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMR 270

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D YT   ++ AC     +  G+ IH  + ++  + + FV +ALVDMY+KC+ I 
Sbjct: 271 AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIR 330

Query: 211 DARQLFDQMPTRDLVTWTVMI--------------------------------------- 231
            A  +F +M  R++++WT MI                                       
Sbjct: 331 LAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390

Query: 232 -------GANKFLLDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                  GA    L ++ G         A++ +Y KCGSI+ A  +FD M   + +SW+A
Sbjct: 391 NLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 450

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++  Y   G+ K+ +DLF  ML++ + P+ +TF+ +L ACS  GLVE+G   F SM  D 
Sbjct: 451 LVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDH 510

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  R+GR  EA + I+ M    D   W  LL +CR+  N+++ + A
Sbjct: 511 GIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWA 570

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A++LLE  PQNP  YVLL +++A  G+W +VA +R  M  R++KK PG +WI+ +NK+H 
Sbjct: 571 AENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHI 630

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D +HP S  IY  L  L+ K+   GY PD +  LHDV +  KV  +  HSEKLAIA
Sbjct: 631 FSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIA 690

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI  P+   IRI+KNLRVC DCH+  K +S IT R I+VRDA RFH F  G CSC D+
Sbjct: 691 FGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDF 750

Query: 577 W 577
           W
Sbjct: 751 W 751



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 158/382 (41%), Gaps = 98/382 (25%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL   A  + + D   LF  M ERD+VS++ ++ GFS         + +R  +
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 151 RC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK---- 205
           R   ++    TL  +I       D  +G  +H  VL+ G     FV + LVDMYAK    
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 206 ---------------------------CKVIDDARQLFDQMPTRDLVTWTVM-------- 230
                                      CK+I+DA+ LF  M  RD +TWT M        
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNG 257

Query: 231 ----------------IGANKFLLDVIL------------------------------GT 244
                           +G +++    IL                              G+
Sbjct: 258 LQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGS 317

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           A++DMY+KC SI  A  +F RM  +N+ISW+AMI  YG +   ++A+  F  M    + P
Sbjct: 318 ALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKP 377

Query: 305 NRITFVSLLYACSHTGLVEEG-----LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           +  T  S++ +C++   +EEG     L L S +     V         +V L G+ G ++
Sbjct: 378 DDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS------NALVTLYGKCGSIE 431

Query: 360 EALKLIESMSVEKDEGLWGALL 381
           +A +L + MS   D+  W AL+
Sbjct: 432 DAHRLFDEMSFH-DQVSWTALV 452



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 18/149 (12%)

Query: 171 RKDIVMGRLIHDIVLKSGLDID-QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
           R  + +   +H ++LK+ L     F+   L+  YAK   +  AR++FD+MP  +L T   
Sbjct: 25  RTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNA 84

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           ++ A      +     V DM            +F  M +++ +S++A+I  +   G   +
Sbjct: 85  LLSA------LAHSRLVPDM----------ERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 290 ALDLFPMML-SSRVLPNRITFVSLLYACS 317
           ++ L+  +L    V P RIT  +++   S
Sbjct: 129 SVQLYRALLREESVRPTRITLSAMIMVAS 157


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 307/560 (54%), Gaps = 64/560 (11%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H   V  G    L V N L+ +Y     L +A  +F+GM+ RD V+W+ ++ G  +   
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA- 197
                + F+     G+  D  TL  +  A     D    + +H  V++ G D+D  +   
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310

Query: 198 -------------------------------ALVDMYAKCKVIDDARQLFDQMPTRD--- 223
                                           L+  Y +  + ++A + +  M   +   
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK 370

Query: 224 ------------------------LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
                                   +   ++ IG N   +DV +GT +ID+YAKCG +  A
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLN---VDVYVGTCLIDLYAKCGKLAEA 427

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             +F++M +++   W+A+I+  G HG G +AL LF  M    + P+ +TFVSLL ACSH 
Sbjct: 428 MLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHA 487

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GLV++G   F  M   + + P  KHY CM D+LGRAG+LDEA   I++M ++ D  +WGA
Sbjct: 488 GLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGA 547

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LLGACRIH NV++ ++A+++L E  P+N G+YVL+SN+YA  G+W  V ++R L+ R+ L
Sbjct: 548 LLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNL 607

Query: 440 KKIPGWTWIEVENKIHQFSVGDST--HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
           +K PGW+ IEV+  ++ F  G+ T  HPQ EEI   L +L  K+   GY+ D +F L DV
Sbjct: 608 QKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDV 667

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +++ K   L +HSE+LAIAFG+I TP  T + I KNLRVCGDCH+  K++S IT R IIV
Sbjct: 668 EDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIV 727

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD+NRFHHF+ G CSC D+W
Sbjct: 728 RDSNRFHHFKDGHCSCGDFW 747



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 186/421 (44%), Gaps = 60/421 (14%)

Query: 52  CQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTD 110
           C +    D   F S + +  +     Q+HA  +  G +  ++  +  L++ Y     +++
Sbjct: 62  CAYPFRPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISE 121

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A+ +F+ M ERD  +W+ M+ G  + A        F   +  G+  D+ T+  V+  C  
Sbjct: 122 AYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVL 181

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             D V+  ++H   +K GLD + FVC AL+D+Y K  ++++A+ +F  M  RDLVTW  +
Sbjct: 182 LGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSI 241

Query: 231 I------GANKFLL-------------DVILGTAVIDMYAKCGSIDSAREI--------- 262
           I      G     L             DV+   ++    A+ G   SA+ +         
Sbjct: 242 ISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGW 301

Query: 263 ---------------------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                                      FD M  ++ +SW+ +I  Y  +G   +A++ + 
Sbjct: 302 DVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYG 361

Query: 296 MMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
            M     L   + TFVS+L A SH G +++G+R+  ++     +  DV   TC++DL  +
Sbjct: 362 HMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMH-ALSIKIGLNVDVYVGTCLIDLYAK 420

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            G+L EA+ L E M   +  G W A++    +H +   A +   S ++++   P H   +
Sbjct: 421 CGKLAEAMLLFEKMP-RRSTGPWNAIISGLGVHGHGAEA-LTLFSRMQQEGIKPDHVTFV 478

Query: 415 S 415
           S
Sbjct: 479 S 479


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/572 (37%), Positives = 304/572 (53%), Gaps = 85/572 (14%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I +N ++ ++     + +A  LFN MK++D VSWS ++  + +   +      F+E  
Sbjct: 222 NVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMN 281

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD-------------------- 190
             G+ +D   +  V+ AC     ++ G+L+H +V+K G++                    
Sbjct: 282 ANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVV 341

Query: 191 -----------IDQFVCAALVDMYAKCKVIDDARQLFDQMP------------------- 220
                      +DQ    +++  Y KC  I+ AR LFD MP                   
Sbjct: 342 TAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDR 401

Query: 221 -TRDLVTWTVM----------------------------------IGANKFLLDVILGTA 245
            T  LV +  M                                  I  N   +++ILGT 
Sbjct: 402 FTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTT 461

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I+MY K G ++ A E+F  + +K V +W+A+I     +G   K+L  F  M    V PN
Sbjct: 462 LINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPN 521

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            ITFV++L AC H GLV+EG R F+SM  +  + P++KHY CMVDLLGRAG L EA +LI
Sbjct: 522 EITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELI 581

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           ESM +  D   WGALLGAC+ + + +  E   + L+E  P + G  VLLSN+YA+ G W 
Sbjct: 582 ESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWV 641

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           DV ++R +M +  + K PG + IE   ++H+F  GD THPQ+E I  ML  +++KL+L G
Sbjct: 642 DVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEG 701

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y PDT     D+DEE K   L+ HSEKLAIAFGLIA    T IRI+KNLR+C DCH+  K
Sbjct: 702 YAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAK 761

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S    R I+VRD +RFHHF+ G+CSC DYW
Sbjct: 762 LISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 48/366 (13%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKERD 122
           + L  C+NI Q  Q+ +Q++  G   +   A++LL          +  ++ +F+ ++  +
Sbjct: 31  THLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPN 90

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
               + M+ G+ +          ++  +   +  D+YT P + ++C  R     G+ I D
Sbjct: 91  GFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQD 150

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL----- 237
            VLK G D D ++   L++MYA C  + DAR++FD     D+V+W  M+     +     
Sbjct: 151 HVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEE 210

Query: 238 ----------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                      +VI   ++I ++ K G+++ A ++F+ M+QK+++SWSA+I+ Y  +   
Sbjct: 211 AKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMY 270

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSH-----TGLVEEGL---------------- 326
           ++AL LF  M ++ ++ + +  +S+L ACS      TG +  GL                
Sbjct: 271 EEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNAL 330

Query: 327 -RLFSSMWDDFAVRPDVKHYTC--------MVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             ++SS  +    +       C        M+    + G +++A  L +SM  +KD   W
Sbjct: 331 IHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMP-DKDNVSW 389

Query: 378 GALLGA 383
            A++  
Sbjct: 390 SAMISG 395


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/467 (42%), Positives = 272/467 (58%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF  M  R  V+W+ M+ G+ +     +    FR  +  G++ ++ +L  V+  C +
Sbjct: 216 AERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSN 275

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H           Q VC        KC +  D                   
Sbjct: 276 LSALQLGKQVH-----------QLVC--------KCPLSSDTTA---------------- 300

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                       GT+++ MY+KCG +  A E+F ++ +K+V+ W+AMI+ Y  HG GKKA
Sbjct: 301 ------------GTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKA 348

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M    + P+ ITFV++L AC+H GLV+ G++ F++M  DF +    +HY CMVD
Sbjct: 349 LRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVD 408

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRAG+L EA+ LI+SM  +    ++G LLGACRIHKN++LAE AAK+LLE  P     
Sbjct: 409 LLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATG 468

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YV L+NVYA   RW  VA IR  M    + KIPG++WIE+ + +H F   D  HP+   I
Sbjct: 469 YVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASI 528

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  L  L +K++LAGY+PD  F LHDV EE+K   L  HSEKLAIAFGL+  P G  IR+
Sbjct: 529 HEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRV 588

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLRVCGDCHS  K++S I  R IIVRD  RFHHF+ G CSCRDYW
Sbjct: 589 FKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 140/314 (44%), Gaps = 26/314 (8%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            N+I +NKL+  Y     +  A  +F  MK + +V+W+ ++  F+K       FE  R+ 
Sbjct: 39  NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGH---FEYARQL 95

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKV 208
                Q ++ +   ++        +   R   D + LK     D      ++   A+  +
Sbjct: 96  FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK-----DVASWNTMISALAQVGL 150

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLD---------------VILGTAVIDMYAKC 253
           + +AR+LF  MP ++ V+W+ M+       D               VI  TA+I  Y K 
Sbjct: 151 MGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKF 210

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ A  +F  M  + +++W+AMIA Y  +G+ +  L LF  ML + V PN ++  S+L
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVL 270

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
             CS+   ++ G ++   +     +  D    T +V +  + G L +A +L   +   KD
Sbjct: 271 LGCSNLSALQLGKQV-HQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKD 328

Query: 374 EGLWGALLGACRIH 387
              W A++     H
Sbjct: 329 VVCWNAMISGYAQH 342



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 25/196 (12%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           L+  Y +C  ID A ++F+ M  +  VTW  ++ A                  K G  + 
Sbjct: 47  LIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAA---------------FAKKPGHFEY 91

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR++F+++ Q N +S++ M+A + +H     A   F  M     L +  ++ +++ A + 
Sbjct: 92  ARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSM----PLKDVASWNTMISALAQ 147

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            GL+ E  RLFS+M +   V      ++ MV      G LD A++   +  + +    W 
Sbjct: 148 VGLMGEARRLFSAMPEKNCVS-----WSAMVSGYVACGDLDAAVECFYAAPM-RSVITWT 201

Query: 379 ALLGACRIHKNVDLAE 394
           A++        V+LAE
Sbjct: 202 AMITGYMKFGRVELAE 217


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/588 (35%), Positives = 316/588 (53%), Gaps = 88/588 (14%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++H+QI+  G   + +++N LL +Y     +  A  LF+ M  RD VSW+ ++   +K  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 138 DFINCFETFRE-FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                       F   G+Q D +    ++RAC     + +G+ +H   + S    D+ V 
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVK 143

Query: 197 AALVDMYAKCKVIDDARQLFD-------------------------------QMPTRDLV 225
           ++L+DMY KC   D+AR +FD                               Q P R+L 
Sbjct: 144 SSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLF 203

Query: 226 TWTVMIG--------------------------------------ANKFLLDV------- 240
           +WT +I                                       AN  LL++       
Sbjct: 204 SWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGL 263

Query: 241 ----------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                      +  A++DMYAKC  I +A++IF RM +K+VISW+++I     HG+ ++A
Sbjct: 264 VIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEA 323

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L L+  M+ SR+ PN +TFV LLYACSH GLV  G  LF SM  D+++ P ++HYTC++D
Sbjct: 324 LTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLD 383

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LL R+G LDEA  L++ +  + DE  W +LL AC  H N+++    A  +L+ +P++P  
Sbjct: 384 LLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPST 443

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST-HPQSEE 469
           Y+LLSNVYA A  W  V+K+R LM+   ++K PG++ I+       F  G+S  HP   E
Sbjct: 444 YILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNE 503

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           I  +L  L  ++   GY+P+T+F L+D++++ K   L+ HSE+LA+A+GL+    GT IR
Sbjct: 504 ICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIR 563

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLR+CGDCH+ +K +S I +R I+VRDA R+HHF+ G CSC D+W
Sbjct: 564 IVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 64/221 (28%)

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           ++ C  R+       +H  ++K+G D    +   L+D+Y KC +I  A QLFD+MP RD 
Sbjct: 10  LQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDH 69

Query: 225 VTWTVMIGAN-------------------------------------------------- 234
           V+W  ++ A+                                                  
Sbjct: 70  VSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 235 KFLL-----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           +F+L     D ++ +++IDMY KCG  D AR +FD +  KN +SW++MI+ Y   G+  +
Sbjct: 130 RFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           A+DLF   L + V  N  ++ +L+     +GL++ G  ++S
Sbjct: 190 AMDLF---LQAPV-RNLFSWTALI-----SGLIQSGHGIYS 221


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/575 (36%), Positives = 317/575 (55%), Gaps = 63/575 (10%)

Query: 65  SSLLS----CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD---AHALFNG 117
           SS+LS    C ++ +++Q+ A  +      N  V  KL+     +  +     AH +F+ 
Sbjct: 36  SSILSLIPKCTSLRELKQIQAYTIKTHQ-NNPTVLTKLINFCTSNPTIASMDHAHRMFDK 94

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           + + D V ++ M  G+++  D +       + +  G+  D YT   +++AC   K +  G
Sbjct: 95  IPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEEG 154

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV-------- 229
           + +H + +K G+  + +VC  L++MY  C  +D AR++FD++    +V +          
Sbjct: 155 KQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARN 214

Query: 230 ---------------------------------MIGA-------------NKFLLDVILG 243
                                            ++GA             N F   V + 
Sbjct: 215 SRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVN 274

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           TA+IDMYAKCGS+D A  +F  M +++  +WSAMI AY  HG G +A+ +   M  ++V 
Sbjct: 275 TALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQ 334

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ ITF+ +LYACSHTGLVEEG   F SM  ++ + P +KHY CM+DLLGRAGRL+EA K
Sbjct: 335 PDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACK 394

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
            I+ + ++    LW  LL +C  H NV++A++  + + E    + G YV+LSN+ A  GR
Sbjct: 395 FIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGR 454

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W DV  +R +M  +   K+PG + IEV N +H+F  GD  H  S  ++  L  L ++L+L
Sbjct: 455 WDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKL 514

Query: 484 AGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
           AGY+PDT+   + D+++E K   L  HSEKLAI +GL+ TP GT IR++KNLRVC DCH+
Sbjct: 515 AGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHN 574

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K +S I  R II+RD  RFHHF+ G CSC DYW
Sbjct: 575 AAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/555 (38%), Positives = 296/555 (53%), Gaps = 54/555 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             Q+H+QI+      N  V + L+ +YA    L  A  +      +D VSW+ M+ G+++ 
Sbjct: 493  EQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 552

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    TFR+ +  G++ D   L   + AC   + +  G+ IH     SG   D    
Sbjct: 553  NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 612

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI--------- 241
             ALV +Y+KC  I++A   F+Q    D + W  ++      G N+  L V          
Sbjct: 613  NALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGID 672

Query: 242  -----LGTAV----------------------------------IDMYAKCGSIDSAREI 262
                  G+AV                                  I MYAKCGSI  A++ 
Sbjct: 673  SNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQ 732

Query: 263  FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
            F  +  KN +SW+AMI AY  HG G +ALD F  M+ S V PN +T V +L ACSH GLV
Sbjct: 733  FLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 792

Query: 323  EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            ++G+  F SM  ++ + P  +HY C+VD+L RAG L  A   I  M +E D  +W  LL 
Sbjct: 793  DKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLS 852

Query: 383  ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            AC +HKN+++ E AA  LLE +P++   YVLLSN+YA   +W      R  M  + +KK 
Sbjct: 853  ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKE 912

Query: 443  PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            PG +WIEV+N IH F VGD  HP ++EI+     L+++    GY+ D    L ++ +E K
Sbjct: 913  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQK 972

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               ++ HSEKLAI+FGL++ P    I +MKNLRVC DCH +IK VS ++ R IIVRDA R
Sbjct: 973  DPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYR 1032

Query: 563  FHHFEGGACSCRDYW 577
            FHHFEGGACSC+DYW
Sbjct: 1033 FHHFEGGACSCKDYW 1047



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 168/386 (43%), Gaps = 59/386 (15%)

Query: 59  DPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D     S +++C +   +F  +Q+HA     G  +N  +   LL +YA    +  A   F
Sbjct: 371 DSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYF 430

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
              +  + V W+VM+  +  + D  N F  FR+     +  + YT P +++ C    D+ 
Sbjct: 431 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 490

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GAN 234
           +G  IH  ++K+   ++ +VC+ L+DMYAK   +D A  +  +   +D+V+WT MI G  
Sbjct: 491 LGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 550

Query: 235 KFLLD-------------------VILGTAV----------------------------- 246
           ++  D                   V L  AV                             
Sbjct: 551 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 610

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                + +Y+KCG+I+ A   F++    + I+W+A+++ +   G  ++AL +F  M    
Sbjct: 611 FQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREG 670

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  N  TF S + A S T  +++G ++ + +        + +    ++ +  + G + +A
Sbjct: 671 IDSNNFTFGSAVKAASETANMKQGKQVHAVI-TKTGYDSETEVCNAIISMYAKCGSISDA 729

Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
            K    +S+ K+E  W A++ A   H
Sbjct: 730 KKQFLELSM-KNEVSWNAMINAYSKH 754



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 127/308 (41%), Gaps = 49/308 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           + Q+HA+I+  G   + IV N L+ +Y+ +  +  A  +F+G+  +D  SW  M+ G SK
Sbjct: 189 VEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSK 248

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
               +     F +    G+    Y    V+ AC+  + + +G  +H +VLK G   D +V
Sbjct: 249 NECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 308

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           C ALV +Y     +  A  +F  M  RD VT+  +I                   ++CG 
Sbjct: 309 CNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLING----------------LSQCG- 351

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
                                    YG     +KA++LF  M    + P+  T  SL+ A
Sbjct: 352 -------------------------YG-----EKAMELFKRMQLDGLEPDSNTLASLVVA 381

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CS  G +  G +L +          + K    +++L  +   ++ AL       VE +  
Sbjct: 382 CSSDGTLFSGQQLHAYT-TKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVE-NVV 439

Query: 376 LWGALLGA 383
           LW  +L A
Sbjct: 440 LWNVMLVA 447



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 138/347 (39%), Gaps = 96/347 (27%)

Query: 133 FSKVADFINCFETFRE-----FIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLK 186
           F+ ++  I+  E+F+E        CG++ +  TL +++  C +    +  GR +H  +LK
Sbjct: 37  FTAISVSISEDESFQENGIDSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 96

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------- 231
            G D +  +   L+D Y     +D A ++FD+MP R + TW  MI               
Sbjct: 97  LGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCL 156

Query: 232 -------------GANKFLLDVILGTAV---------------------------IDMYA 251
                        G    +L+   G +V                           ID+Y+
Sbjct: 157 FGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYS 216

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           + G +D AR +FD +  K+  SW AMI+    +    +A+ LF  M    ++P    F S
Sbjct: 217 RNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSS 276

Query: 312 LLYACSHTGLVEEGLRL--------FSS-----------------------MWDDFAVRP 340
           +L AC     +E G +L        FSS                       ++ + + R 
Sbjct: 277 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQR- 335

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           D   Y  +++ L + G  ++A++L + M    +E D     +L+ AC
Sbjct: 336 DAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVAC 382


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/550 (37%), Positives = 317/550 (57%), Gaps = 56/550 (10%)

Query: 83  IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142
           +V G  +++  VA  ++ +YA    + DA  +F+ + ++D V ++ ++ G+++       
Sbjct: 128 VVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDGEA 187

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
            E F + +   ++ + YTL  V+ +C +  D+V G+LIH +V+KSGL+       +L+ M
Sbjct: 188 LEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTM 247

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMI------------------------GANKFLL 238
           Y+KC +++D+ ++F+ +     VTWT  I                          N F  
Sbjct: 248 YSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTF 307

Query: 239 DVIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQ 268
             IL                                A+I +Y KCG+++ AR +F+ + +
Sbjct: 308 SSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTE 367

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
            +V+S + MI AY  +G G +AL+LF  M      PN +TF+S+L AC++ GLVEEG ++
Sbjct: 368 LDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQI 427

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           FS + ++ ++     HYTCM+DLLGRA R +EA  LIE      D   W  LL AC+IH 
Sbjct: 428 FSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEE-GKNPDVIQWRTLLNACKIHG 486

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
            V++AE   K +L++ P++ G ++LL+N+YA+AG+W +V +++      RLKK P  +W+
Sbjct: 487 EVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWV 546

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
           +++ ++H F  GD +HP++ EI  ML  L EK+   GY PDT F L D++EE K+  LY 
Sbjct: 547 DIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYY 606

Query: 509 HSEKLAIAFGLIAT-PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
           HSEKLAIAF L  T  + T IRI KNLRVCGDCHS+IK VS +T R II RDA RFHHF+
Sbjct: 607 HSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDAKRFHHFK 666

Query: 568 GGACSCRDYW 577
           GG CSC+DYW
Sbjct: 667 GGICSCKDYW 676



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 161/362 (44%), Gaps = 57/362 (15%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I+   + +++  ++ +H  I+  G+L +    +KL+  Y     +T+A  LF+ M  R 
Sbjct: 7   LIAQFTNKKSLTTLKSLHTHILKSGSLFSFF-GHKLIDGYIKCSVITEARKLFDEMPNRH 65

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            V+W+ M+             E +   +  G+  D+YT   + +A  +      G+  H 
Sbjct: 66  IVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHG 125

Query: 183 IVLKSGLDI-DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GANKFLLD- 239
           + +  G ++ D FV   +VDMYAK   + DAR +FD++  +D+V +T +I G N+  LD 
Sbjct: 126 LAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLDG 185

Query: 240 --------------------------------------VILGTAV--------------I 247
                                                 +I G  V              +
Sbjct: 186 EALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLL 245

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            MY+KC  ++ + ++F+ +   + ++W++ I     +G+ + AL +F  M+   + PN  
Sbjct: 246 TMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHF 305

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF S+L+ACS   ++E G ++  ++     V  +      ++ L G+ G +++A  + ES
Sbjct: 306 TFSSILHACSSLAMLEAGEQI-HAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFES 364

Query: 368 MS 369
           ++
Sbjct: 365 LT 366



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 80/147 (54%), Gaps = 15/147 (10%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            G  +ID Y KC  I  AR++FD M  +++++W++MI+++   G+ K+A++L+  ML   
Sbjct: 37  FGHKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEG 96

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLR-------LFSSMWDDFAVRPDVKHYTCMVDLLGR 354
           VLP+  TF ++  A S  G+  EG +       L   + D F         T +VD+  +
Sbjct: 97  VLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVA-------TGIVDMYAK 149

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALL 381
            G++ +A + +    ++KD  L+ AL+
Sbjct: 150 FGKMKDA-RFVFDRVLDKDVVLFTALI 175



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 107/249 (42%), Gaps = 33/249 (13%)

Query: 57  SVDPKFF-ISSLL-SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
           S+ P  F  SS+L +C ++  +    Q+HA  V  G   N  V   L+++Y     +  A
Sbjct: 299 SISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKA 358

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
            ++F  + E D VS + M+  +++        E F    + G + +  T   ++ AC + 
Sbjct: 359 RSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNA 418

Query: 172 KDIVMGRLIHDIVLKS---GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
             +  G  I  ++  +    L  D + C  ++D+  + K  ++A  L ++    D++ W 
Sbjct: 419 GLVEEGCQIFSLIRNNHSIELTRDHYTC--MIDLLGRAKRFEEAAMLIEEGKNPDVIQWR 476

Query: 229 VMIGANKFLLDVIL----------------GTAVI--DMYAKCGSIDSAREIFD-----R 265
            ++ A K   +V +                GT ++  ++YA  G  D+  E+       R
Sbjct: 477 TLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLR 536

Query: 266 MRQKNVISW 274
           +++   +SW
Sbjct: 537 LKKTPAMSW 545


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/531 (36%), Positives = 301/531 (56%), Gaps = 55/531 (10%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y    A++DA  +F+ M  RD VSW+ ++ G+++            + +R   + + +T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
              +++A        +G  +H + +K   D D +V +AL+DMYA+C+ +D A  +FD++ 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 221 TRDLVTWTVMI------------------------GANKFL------------------- 237
           +++ V+W  +I                        GA  F                    
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 238 -----------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                      L   +G  ++ MYAK GS+  AR++FDRM ++++++W+ M+ A   +G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           GK+A+  F  +    +  N+ITF+S+L ACSH GLV+EG   F  M  D+ V+P++ HY 
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQPEIDHYV 299

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
             VDLLGRAG L EAL  +  M +E    +WGALLGACR+HKN  + + AA  + E  P 
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 359

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           + G  VLL N+YA+ G+W D A++R +M    +KK P  +W+++EN +H F   D THP+
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 419

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
           S +IYRM   ++ +++ AGY+P+T   L  ++E+ +   L  HSEK+A+AF LI  P G 
Sbjct: 420 SGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGA 479

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IRIMKN+R+CGDCHS  K+VS + +R I+VRD NRFHHF  G+CSC DYW
Sbjct: 480 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/611 (34%), Positives = 340/611 (55%), Gaps = 95/611 (15%)

Query: 60  PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI----YALHKA---LTDAH 112
           PK  ++ L SC +   ++ +H  ++    ++++ VA++LL +       +K    L  A+
Sbjct: 14  PK--LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+ ++  +   +++++  FS  A+    F  + + ++  +  D+ T PF+I+A  + +
Sbjct: 72  GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEME 131

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA---------------------------- 204
            +++G   H  +++ G   D +V  +LV MYA                            
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191

Query: 205 ---KCKVIDDARQLFDQMPTRDLVTWTVMI------------------------------ 231
              KC ++++AR++FD+MP R+L TW++MI                              
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251

Query: 232 -----------GANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267
                      GA +F              +++ILGTA++DM+ +CG I+ A  +F+ + 
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLP 311

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
           + + +SWS++I     HG   KA+  F  M+S   +P  +TF ++L ACSH GLVE+GL 
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           ++ +M  D  + P ++HY C+VD+LGRAG+L EA   I  M V+ +  + GALLGAC+I+
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIY 431

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
           KN ++AE     L++ +P++ G+YVLLSN+YA AG+W  +  +RD+M  + +KK PGW+ 
Sbjct: 432 KNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSL 491

Query: 448 IEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
           IE++ KI++F++G D  HP+  +I R    +  K+ L GY  +T     DVDEE K  ++
Sbjct: 492 IEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSI 551

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
           + HSEKLAIA+G++ T  GT IRI+KNLRVC DCH+  K +S +  R +IVRD NRFHHF
Sbjct: 552 HMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHF 611

Query: 567 EGGACSCRDYW 577
             G CSCRDYW
Sbjct: 612 RNGVCSCRDYW 622


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/579 (35%), Positives = 316/579 (54%), Gaps = 58/579 (10%)

Query: 53   QFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
            Q  + ++   F S+L +C N   + + + VHA I+  G    LIV N L+ +Y     + 
Sbjct: 492  QMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMM 551

Query: 110  DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            +A  +   M + D V+W+ ++GG ++  +     + ++     G+  +  T+  V+ AC 
Sbjct: 552  EAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611

Query: 170  DRKDIVM-GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
               D++  G  IH  ++ +G + D +V  +L+ MYAKC  ++ +  +FD +  +  +TW 
Sbjct: 612  APDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWN 671

Query: 229  VM----------------------IGAN-------------------------------- 234
             M                      +G N                                
Sbjct: 672  AMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKL 731

Query: 235  KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
             F  D+ +  A +DMY KCG +    ++  +   ++ +SW+ +I+A+  HG  +KA + F
Sbjct: 732  GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETF 791

Query: 295  PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
              ML     P+ +TFVSLL AC+H GLV+EGL  + SM  +F V P ++H  C++DLLGR
Sbjct: 792  HEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGR 851

Query: 355  AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            +GRL  A   I+ M V  ++  W +LL ACRIH N++LA   A+ LLE  P +   YVL 
Sbjct: 852  SGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLY 911

Query: 415  SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
            SNV A +G+W+DV  +R  M    +KK P  +W+++++K+H F +G+  HPQ+  I   L
Sbjct: 912  SNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKL 971

Query: 475  VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
              L +  + AGY+PDT+F LHD+DEE K  NL++HSE+LA+AFGLI TPE + +RI KNL
Sbjct: 972  GELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNL 1031

Query: 535  RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
            RVCGDCHS  K VS I  R I++RD  RFHHF GG CSC
Sbjct: 1032 RVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 184/418 (44%), Gaps = 60/418 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H  +V  G  +N+ + N LL +Y+      DA  +F  M ERD +SW+ M+  + + 
Sbjct: 418 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 477

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              ++  +   E ++ G  ++  T    + AC + + ++  +++H +++ +G      V 
Sbjct: 478 GKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVG 537

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
            ALV MY K  ++ +A+++   MP  D VTW  +IG                        
Sbjct: 538 NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIP 597

Query: 233 ANKFLLDVILG-------------------------------TAVIDMYAKCGSIDSARE 261
           AN   +  +LG                                ++I MYAKCG ++S+  
Sbjct: 598 ANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNY 657

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           IFD +  K+ I+W+AM+AA  +HG G++AL +F  M +  V  ++ +F   L A ++  +
Sbjct: 658 IFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAV 717

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +EEG +L   +        D+      +D+ G+ G + + LK++    + +    W  L+
Sbjct: 718 LEEGQQLH-GLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKML-PQPINRSRLSWNILI 775

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA--NAGRWQDVAKIRDLMTRR 437
            A   H     A      +L+  P+ P H   +S + A  + G   +     D MTR 
Sbjct: 776 SAFARHGCFQKARETFHEMLKLGPK-PDHVTFVSLLSACNHGGLVDEGLAYYDSMTRE 832



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 165/366 (45%), Gaps = 58/366 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +HA  + G     +   N L+ +Y+    +  A  +F+ M+ R+  SWS M+ G+ +V
Sbjct: 114 KALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRV 173

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             +      F +    G++ + + +  +I AC R       G  +H  V+K+G+  D +V
Sbjct: 174 GLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYV 233

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIG---------------------- 232
             ALV  Y    ++ +A++LF++MP  ++V+WT +M+G                      
Sbjct: 234 GTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGV 293

Query: 233 ---ANKF---------LLDVILG-------------------TAVIDMYAKCGSIDSARE 261
               N F         L D +LG                    ++I M++   S++ A  
Sbjct: 294 SGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACY 353

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M + ++ISW+AMI+AY +HG  +++L  F  M       N  T  SLL  CS    
Sbjct: 354 VFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDN 413

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++ G R    +     +  +V     ++ L   AGR ++A  + ++M+ E+D   W +++
Sbjct: 414 LKWG-RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMM 471

Query: 382 GACRIH 387
            AC + 
Sbjct: 472 -ACYVQ 476



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 158/369 (42%), Gaps = 65/369 (17%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK-- 135
           QV   I+  G   ++ VAN L+ +++   ++ +A  +F+ M E D +SW+ M+  ++   
Sbjct: 318 QVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHG 377

Query: 136 -VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              + + CF   R       + +S TL  ++  C    ++  GR IH +V+K GLD +  
Sbjct: 378 LCRESLRCFHWMRHLHN---ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVC 434

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------N 234
           +C  L+ +Y++    +DA  +F  M  RDL++W  M+                       
Sbjct: 435 ICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG 494

Query: 235 KFLLDVILGTAV----------------------------------IDMYAKCGSIDSAR 260
           K +  V   +A+                                  + MY K G +  A+
Sbjct: 495 KVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAK 554

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT- 319
           ++   M Q + ++W+A+I  +  + +  +A+  + ++    +  N IT VS+L ACS   
Sbjct: 555 KVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD 614

Query: 320 GLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            L++ G+ + + +    F     VK+   ++ +  + G L+ +  + + +   K    W 
Sbjct: 615 DLLKHGMPIHAHIVLTGFESDDYVKN--SLITMYAKCGDLNSSNYIFDGLG-NKSPITWN 671

Query: 379 ALLGACRIH 387
           A++ A   H
Sbjct: 672 AMVAANAHH 680



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 5/156 (3%)

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
           ++  QM  + L  + ++   N   L +     +I+MY+K G+I+ AR +FD MR +N  S
Sbjct: 106 EITSQMAGKALHAFCIVGSVN---LGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS 162

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG-LVEEGLRLFSSM 332
           WS M++ Y   G  ++A+ LF  M    V PN     SL+ ACS +G + +EG ++   +
Sbjct: 163 WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFV 222

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
                +  DV   T +V   G  G +  A KL E M
Sbjct: 223 VKT-GILGDVYVGTALVHFYGSIGLVYNAQKLFEEM 257



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/295 (20%), Positives = 121/295 (41%), Gaps = 66/295 (22%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           IRC   L++   P  ++   +    + G+ +H   +   +++  F    L++MY+K   I
Sbjct: 91  IRC---LNAVNFP--LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNI 145

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA------------------------NKFLL------- 238
           + AR +FD+M  R+  +W+ M+                          N F++       
Sbjct: 146 EHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITAC 205

Query: 239 ------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                                   DV +GTA++  Y   G + +A+++F+ M   NV+SW
Sbjct: 206 SRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSW 265

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           ++++  Y   G   + L+++  M    V  N+ TF ++  +C   GL+E+ +  +  +  
Sbjct: 266 TSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLEDQVLGYQVLGH 322

Query: 335 --DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
              +     V     ++ +      ++EA  + + M+ E D   W A++ A   H
Sbjct: 323 IIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHH 376


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/543 (36%), Positives = 303/543 (55%), Gaps = 55/543 (10%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            N +VAN  +  YA   +L+ AH +F  ++ +   SW+ ++GG+S+ +D     + + + 
Sbjct: 426 NNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQM 485

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
              G+  D +T+  ++ AC   K + +G+ +H +++++ L+ D FV  +L+ +Y  C  +
Sbjct: 486 KSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGEL 545

Query: 210 DDARQLFDQMPTRDLVTWTVMI-----------------------------------GAN 234
             A  LFD M  + LV+W  M+                                   GA 
Sbjct: 546 STAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGAC 605

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  + LG                    +VIDMYAK GS+  + ++F+ +++++V SW+
Sbjct: 606 SLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWN 665

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           AM+  YG HG+ K+A+ LF  M  +   P+ +TF+ +L AC+H+GLV EGL     M   
Sbjct: 666 AMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTL 725

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKL-IESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           F + P +KHY C++D+L RAG+LDEALK+  E MS E   G+W  LL +CRIHKN+++ E
Sbjct: 726 FGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGE 785

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A  L   +P+ P +YVLLSN+YA +G+W +V K+R  M    L+K  G +WIE+  K+
Sbjct: 786 KIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKV 845

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
             F  G+S+    EEI  +   L  ++   GY PDT+   HD+ EE K   L  HSEKLA
Sbjct: 846 FSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLA 905

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           I +GLI T EGT +R+ KNLR+C DCH+  K +S +  R I+VRD  RFHHF+ G CSC 
Sbjct: 906 ITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCG 965

Query: 575 DYW 577
           DYW
Sbjct: 966 DYW 968



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 112/517 (21%), Positives = 192/517 (37%), Gaps = 121/517 (23%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R I   + VH   +       ++V N L+ +Y+    + DA  +F     ++ VSW+ MV
Sbjct: 303 REIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMV 362

Query: 131 GGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           GGFS   D    F+  R+ +  G  ++ D  T+   +  C +   +   + +H   LK  
Sbjct: 363 GGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQE 422

Query: 189 -LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------NKFLLDVI 241
            +  ++ V  A V  YAKC  +  A ++F  + ++ + +W  +IG        +  LD  
Sbjct: 423 FVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAY 482

Query: 242 LGT----------AVIDMYAKCGSIDS--------------------------------- 258
                         V  + + C  I S                                 
Sbjct: 483 FQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHC 542

Query: 259 -----AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
                A  +FD M  K ++SW+ M+  Y  +G  ++AL LF  M+   V P  I+ +S+ 
Sbjct: 543 GELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVF 602

Query: 314 YACS-----------------------------------HTGLVEEGLRLFSSMWDDFAV 338
            ACS                                     G V E  ++F+ + +    
Sbjct: 603 GACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKER--- 659

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACR----IHKNVD 391
              V  +  MV   G  GR  EA+KL E M       DE  +  +L AC     +H+ + 
Sbjct: 660 --SVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLT 717

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG---WTWI 448
             +   K+L    P    HY  + ++   AG+  +  KI        + + PG   W ++
Sbjct: 718 YLDQ-MKTLFGMNP-TLKHYACVIDMLVRAGKLDEALKI----ATEEMSEEPGVGIWNFL 771

Query: 449 EVENKIHQ-FSVGDS-------THPQSEEIYRMLVTL 477
               +IH+   +G+        + P+  E Y +L  L
Sbjct: 772 LSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNL 808



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 77  RQVHAQIVAGGTLTNL-IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R++H  +     L+N  ++  +++ +Y++  +  D+ ++F+ +++++   W+ ++  +S+
Sbjct: 101 RKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSR 160

Query: 136 VADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              + N  E F + I   G+  D++T P V++AC    ++ +G  +H +V+K+ L  D F
Sbjct: 161 NELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVF 220

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
           V  ALV  Y     + DA ++F  MP R+LV+W  MI
Sbjct: 221 VSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMI 257



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 113/245 (46%), Gaps = 35/245 (14%)

Query: 69  SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +C  + +++    VH  +V    + ++ V+N L+  Y  + +++DA  +F  M ER+ VS
Sbjct: 193 ACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVS 252

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQL----DSYTLPFVIRACRDRKDIVMGRLIH 181
           W+ M+  FS       CF    + +    ++    D  TL  V+  C   ++I +G+ +H
Sbjct: 253 WNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVH 312

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
            + +K  LD +  V  AL+DMY+KC  I+DA+ +F     +++V+W  M+G         
Sbjct: 313 GLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGG-------- 364

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG-YHGQGKKALDLFPMMLSS 300
                   ++  G I    + FD +RQ        M+A  G         L+  P+    
Sbjct: 365 --------FSAAGDI---HKTFDLLRQ--------MLAGGGDLRADEVTILNAVPVCFEE 405

Query: 301 RVLPN 305
            VLPN
Sbjct: 406 SVLPN 410



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 6/157 (3%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D +L T VI MY+ CGS D +R +FD +R+KN+  W+A+I++Y  +      L++F  M+
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 299 S-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           + S +LP+  TF  ++ AC+    V+ GL +   +     V  DV     +V   G  G 
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE-DVFVSNALVSFYGTNGS 234

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           + +AL++ + M  E++   W +++   R+  +  L+E
Sbjct: 235 VSDALRVFKIMP-ERNLVSWNSMI---RVFSDNGLSE 267



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 120/291 (41%), Gaps = 66/291 (22%)

Query: 166 RACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           +A   RKDI +GR IH +V +S  L  D  +C  ++ MY+ C   DD+R +FD +  ++L
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 225 VTWTVMIGA---NKFLLDVI---------------------------------LGTAV-- 246
             W  +I +   N+   +V+                                 +G AV  
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG 208

Query: 247 -----------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                            +  Y   GS+  A  +F  M ++N++SW++MI  +  +G  ++
Sbjct: 209 LVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEE 268

Query: 290 ALDLFPMMLSS----RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
              L   M+         P+  T  ++L  C+    +  G +    +    ++  +V   
Sbjct: 269 CFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVG-KGVHGLAMKLSLDKEVVVN 327

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG----ACRIHKNVDL 392
             ++D+  + G +++A ++I  ++  K+   W  ++G    A  IHK  DL
Sbjct: 328 NALMDMYSKCGCINDA-QVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDL 377



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 104/245 (42%), Gaps = 28/245 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+ H   +      N  +A  ++ +YA + ++ ++  +FNG+KER   SW+ MV G+   
Sbjct: 615 REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIH 674

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS--GLDIDQF 194
                  + F E  R G   D  T   V+ AC +   +V   L +   +K+  G++    
Sbjct: 675 GRAKEAIKLFEEMQRTGHCPDELTFLGVLTAC-NHSGLVHEGLTYLDQMKTLFGMNPTLK 733

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRD--LVTWTVMIGANKFLLDVILGTAVI----- 247
             A ++DM  +   +D+A ++  +  + +  +  W  ++ + +   ++ +G  +      
Sbjct: 734 HYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFV 793

Query: 248 -------------DMYAKCGSIDSAREIFDRMRQKNV-----ISWSAMIAAYGYHGQGKK 289
                        ++YA  G  D  R++  RM++ ++      SW  +         G+ 
Sbjct: 794 SEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGES 853

Query: 290 ALDLF 294
           +LD F
Sbjct: 854 SLDGF 858


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 307/569 (53%), Gaps = 85/569 (14%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           + + L+ +YA    + DA  LF+ M  RD V+W++M+ G+S+ A + +  + + E    G
Sbjct: 153 IQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSG 212

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK------ 207
            + D+  L  V+ AC    ++  G+ IH  +  +G  +   +  +LV+MYA C       
Sbjct: 213 TEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAR 272

Query: 208 -------------------------VIDDARQLFDQMPTRDLVTWTVM------------ 230
                                    ++ DAR +FD+M  +DLV W+ M            
Sbjct: 273 EVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLE 332

Query: 231 -----------------------------IGA-------------NKFLLDVILGTAVID 248
                                        +GA             N F   + +  A+ID
Sbjct: 333 ALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALID 392

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAKCG++  ARE+F+ M +KNVISWS+MI A+  HG    A+ LF  M    + PN +T
Sbjct: 393 MYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVT 452

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +LYACSH GLVEEG + FSSM ++  + P  +HY CMVDL  RA  L +A++LIE+M
Sbjct: 453 FIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETM 512

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
               +  +WG+L+ AC+ H  ++L E AA  LLE +P + G  V+LSN+YA   RW DV 
Sbjct: 513 PFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVG 572

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
            +R LM  + + K    + IEV N++H F + D  H QS+EIY+ L  +  +L+L GY P
Sbjct: 573 LVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTP 632

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
            T+  L D++EE K   +  HSEKLA+ +GLI   + + IRI+KNLR+C DCHSF+K VS
Sbjct: 633 STSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVS 692

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            + R  I++RD  RFHHF GG CSCRDYW
Sbjct: 693 KVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 96/444 (21%), Positives = 176/444 (39%), Gaps = 94/444 (21%)

Query: 67  LLSCRNIFQIRQVHAQIV-----AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           L SC+ +  ++Q+HAQI+         L   +V            AL  A +LF+ +   
Sbjct: 19  LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNP 78

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            +   + ++  FS+     N    +    R G  LD ++ P +++A      + +G  IH
Sbjct: 79  PTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEIH 138

Query: 182 DIVLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------- 233
            +  K G    D F+ +AL+ MYA C  I DAR LFD+M  RD+VTW +MI         
Sbjct: 139 GLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHY 198

Query: 234 ------------NKFLLDVILGTAVIDMYAKCGSIDSAR--------------------- 260
                       +    D I+   V+   A  G++   +                     
Sbjct: 199 DHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSL 258

Query: 261 --------------EIFDRMRQKNVISWSAMIAAYGYHG--------------------- 285
                         E++D++  K+++  +AM++ Y   G                     
Sbjct: 259 VNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWS 318

Query: 286 ----------QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
                     Q  +AL LF  M   R++P++IT +S++ AC++ G + +  +   +  D 
Sbjct: 319 AMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQA-KWIHTYADK 377

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
                 +     ++D+  + G L +A ++ E+M   K+   W +++ A  +H + D A +
Sbjct: 378 NGFGRTLPINNALIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGDADSA-I 435

Query: 396 AAKSLLERQPQNPGHYVLLSNVYA 419
           A    ++ Q   P     +  +YA
Sbjct: 436 ALFHRMKEQNIEPNGVTFIGVLYA 459


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/578 (35%), Positives = 314/578 (54%), Gaps = 63/578 (10%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F +SL +C  +  +    Q+H   V  G     +V N  + +Y+    +  A  +FN M 
Sbjct: 108 FSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMP 167

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            R+ VSW+ M+ G +   +       F+     G   D +T    ++AC     I  G  
Sbjct: 168 FRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQ 227

Query: 180 IHDIVLKSG--LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW---------- 227
           IH  ++  G  + I   + +A+VD+YAKC  + +A+++FD++  ++L++W          
Sbjct: 228 IHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQE 287

Query: 228 -------------------------TVMIGANKFL-------------------LDVILG 243
                                    ++M+G    L                   LD+ + 
Sbjct: 288 GNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVA 347

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            ++IDMY KCG  + A  +F  M+ +NV+SW+ MI  YG HG G+KA+ LF  M    + 
Sbjct: 348 NSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIE 407

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            + + +++LL ACSH+GL+ E    FS + ++  ++P+++HY CMVD+LGRAG+L EA  
Sbjct: 408 LDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKN 467

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           LIE+M ++ +EG+W  LL ACR+H N+++     + L      NP +YV++SN+YA AG 
Sbjct: 468 LIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGY 527

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-E 482
           W++  ++R L+  + LKK  G +W+E+  +IH F  GD THP +E+I+ ML  +  ++ E
Sbjct: 528 WKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKE 587

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA---TPEGTHIRIMKNLRVCGD 539
             GY     F LHDV+EE K  NL  HSEKLAI   L+      +G  IR+ KNLRVCGD
Sbjct: 588 EVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCGD 647

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CH FIK +S I ++V +VRDANRFH FE G CSC DYW
Sbjct: 648 CHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 121/276 (43%), Gaps = 56/276 (20%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  ++R C        G  +H   +  G   D  +   L+DMY KC  +D A  +FD+M 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 221 TRDLVTWTVM------------------------IGANKFLLDV---------------- 240
            R++V+WT +                        +  N+F                    
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 241 --------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                         ++G A IDMY+KCG I  A ++F++M  +N++SW+AMIA + + G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHY 345
           G+K+L LF  M     +P+  TF S L AC   G +  G ++ +S+    F +       
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA 246

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           + +VDL  + G L EA K+ + +  +K+   W AL+
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFDRIE-QKNLISWSALI 281



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D+I+   +IDMY KC  +D A  +FDRM ++NV+SW+A++  Y   G  K +L L  
Sbjct: 35  FGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLC 94

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGR 354
            M  S V PN  TF + L AC   G+VE G+++    +   F     V + T  +D+  +
Sbjct: 95  EMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNAT--IDMYSK 152

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
            GR+  A ++   M   ++   W A++ A   H+      +     ++ Q + P  +   
Sbjct: 153 CGRIGMAEQVFNKMPF-RNLVSWNAMI-AGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFT 210

Query: 415 SNVYA 419
           S + A
Sbjct: 211 STLKA 215


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/542 (40%), Positives = 297/542 (54%), Gaps = 60/542 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR--- 147
           +L V+N L+ +YA    L DA  LF GM +R+ VSW+ +V   +         E  R   
Sbjct: 106 SLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKK--EALRFLV 163

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
           E  R G+  +SYT   V+ AC     +     +H  ++K GLD D FV ++L+D Y K  
Sbjct: 164 EMRRDGVAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLG 220

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIG------------------------AN--------- 234
            +D  R +FD+M T DLV W  +I                         AN         
Sbjct: 221 DLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLR 280

Query: 235 -------------------KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                              K+  D+IL  A++DMY KCG +  A  +F RM  ++VISWS
Sbjct: 281 ACTGMVMLEVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWS 340

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MI+    +G+  +AL +F +M +    PN IT V +L+ACSH GLVE+G   F SM   
Sbjct: 341 TMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKL 400

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F ++P+ +H  CMVDLLGRAG+LDEA+K I  M  E D  +W  LLGACR+HKN  LA  
Sbjct: 401 FGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASY 460

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           AA  +L+ +P++ G  +LLSN+YA+  +W +  K    M  + +KK PG +WIE+   +H
Sbjct: 461 AATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVH 520

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F  G+ +HP S+ I + L  L  + +  GY+P T F L D+  E K   L  HSEKLAI
Sbjct: 521 VFIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAI 580

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           AFG + + EG  +RIMKNLR+CGDCH+F K VS    + II+RD  RFHHF+ G CSC D
Sbjct: 581 AFGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGD 640

Query: 576 YW 577
           YW
Sbjct: 641 YW 642



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 125/324 (38%), Gaps = 96/324 (29%)

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV------LKSGLDID 192
           F        +    G++ D  +L  +I+ C     +  GR IH  V              
Sbjct: 47  FTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGS 106

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---------------------- 230
            FV  +LV MYAK  ++DDA +LF  MP R++V+WT +                      
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMR 166

Query: 231 ---IGANKFLLDVILG---------------------------TAVIDMYAKCGSIDSAR 260
              + AN +    +LG                           +++ID Y K G +DS R
Sbjct: 167 RDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGR 226

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M   +++ W+++IA +   G G  A++LF  M  S  L N+ T  S+L AC+   
Sbjct: 227 GVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMV 286

Query: 321 LVEEGLR---------------------------------LFSSMWDDFAVRPDVKHYTC 347
           ++E G +                                 LFS M D      DV  ++ 
Sbjct: 287 MLEVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDR-----DVISWST 341

Query: 348 MVDLLGRAGRLDEALKLIESMSVE 371
           M+  L + GR  EALK+ + M  E
Sbjct: 342 MISGLAQNGRSVEALKVFDLMKAE 365



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
             S L +C  +  +   RQVHA ++      +LI+ N LL +Y     L DA ALF+ M 
Sbjct: 275 LTSVLRACTGMVMLEVGRQVHAHVLKYDR--DLILHNALLDMYCKCGCLLDADALFSRMH 332

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-R 178
           +RD +SWS M+ G ++    +   + F      G   ++ T+  V+ AC     +  G  
Sbjct: 333 DRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWH 392

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFL 237
               +    G+  ++  C  +VD+  +   +D+A +   +M    D V W  ++GA +  
Sbjct: 393 YFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMH 452

Query: 238 LDVILGT 244
            +  L +
Sbjct: 453 KNATLAS 459


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/568 (38%), Positives = 314/568 (55%), Gaps = 54/568 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           + + L  +N    + VH  ++      +L V   LL +Y       DA   F  M + D 
Sbjct: 154 LKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDV 213

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           + WS M+  F++        E F +  R  +  + +T   V++A  D + + + + IH  
Sbjct: 214 IPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGH 273

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDD-------------------------------A 212
            LK+GL  D FV  AL+  YAKC  I+                                A
Sbjct: 274 ALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERA 333

Query: 213 RQLFDQMPTRDL----VTWTVMIGANKFLL-------------------DVILGTAVIDM 249
             LF  M    +    VT++ ++ A   L                    DV +G A+IDM
Sbjct: 334 LSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDM 393

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           YAKCGSI  AR +FD +  ++ +SW+A+I  Y  HG G +A+ +F +M  ++  P+ +TF
Sbjct: 394 YAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTF 453

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           V +L ACS+TG ++EG + F+SM  D+ + P ++HYTCMV L+GR+G LD+A+K IE + 
Sbjct: 454 VGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIP 513

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
            E    +W ALLGAC IH +V+L  ++A+ +LE +P++   +VLLSN+YA A RW +VA 
Sbjct: 514 FEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAY 573

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R  M R+ +KK PG +WIE +  +H F+V D++H   + I  ML  L+ K   AGY P 
Sbjct: 574 VRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQ 633

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
            N  L DV+++ K   L+ HSE+LA+AFGL+  P G  IRI+KNLR+C DCHS IK +S 
Sbjct: 634 LNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISK 693

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I  R IIVRD NRFHHFE G+CSC DYW
Sbjct: 694 IVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 166/365 (45%), Gaps = 56/365 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R VH  ++  G  +N  +   L+  Y++   ++ A  +F+ +  +D VSW+ M+  +++ 
Sbjct: 66  RIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAEN 125

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    E F +    G + +++T   V++AC   ++   G+ +H  VLK+  + D +V 
Sbjct: 126 DCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVG 185

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ 232
             L+++Y +C   DDA + F  MP  D++ W+ MI                         
Sbjct: 186 VGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVI 245

Query: 233 ANKFLL------------------------------DVILGTAVIDMYAKCGSIDSAREI 262
            N+F                                DV +  A++  YAKCG I+ + E+
Sbjct: 246 PNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMEL 305

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ +  +N +SW+ +I +Y   G G++AL LF  ML  +V    +T+ S+L AC+    +
Sbjct: 306 FEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAAL 365

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E GL++   +        DV     ++D+  + G + +A  + + + + +D+  W A++ 
Sbjct: 366 ELGLQV-HCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDL-RDKVSWNAIIC 423

Query: 383 ACRIH 387
              +H
Sbjct: 424 GYSMH 428



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 178/420 (42%), Gaps = 104/420 (24%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M ER++VS+  ++ G+++   FI  FE F      G +L+ +    V++     + 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
             +GR++H  VLK G   + F+  AL+D Y+    +  AR++FD++ ++D+V+WT MI +
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 234 ------------------------NKFLL------------------------------D 239
                                   N F                                D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           + +G  ++++Y +CG  D A   F  M + +VI WS MI+ +   GQ +KAL++F  M  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 300 SRVLPNRITFVSLLYAC-----------------------------------SHTGLVEE 324
           + V+PN+ TF S+L A                                    +  G +E+
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALL 381
            + LF ++ D    R DV   T +V  + + G  + AL L  +M    V+  E  + ++L
Sbjct: 302 SMELFEALSD----RNDVSWNTIIVSYV-QLGDGERALSLFSNMLRYQVQATEVTYSSIL 356

Query: 382 GACRIHKNVDLAE----MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            AC     ++L      + AK++     Q+      L ++YA  G  +D   + D++  R
Sbjct: 357 RACATLAALELGLQVHCLTAKTIY---GQDVAVGNALIDMYAKCGSIKDARFMFDMLDLR 413


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 302/550 (54%), Gaps = 59/550 (10%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTN-LIVANKLLYIYALHKALTDAHAL 114
           D   +   L  C  + ++ Q   VHA +V    L N L++ N ++ +YA    L DA  +
Sbjct: 86  DYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRM 145

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M  +D V+W+ ++ GFS+     +    F + +R G+Q + +TL  +++A      +
Sbjct: 146 FDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGL 205

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---- 230
             G  +H   LK G     +V +ALVDMYA+C  +D A+  FD MPT+  V+W  +    
Sbjct: 206 DPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGH 265

Query: 231 -------------------------------------IGA-------------NKFLLDV 240
                                                IGA             +   L  
Sbjct: 266 ARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIA 325

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +G  ++DMYAK GSID A+ +FDR+ + +V+SW+ M+     HG GK+ LD F  ML  
Sbjct: 326 FIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRI 385

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + PN I+F+ +L ACSH+GL++EGL  F  M   + V PDV HY   VDLLGR G LD 
Sbjct: 386 GIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVPHYVTFVDLLGRVGLLDR 444

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A + I  M +E    +WGALLGACR+HKN++L   AA+   E  P + G  +LLSN+YA+
Sbjct: 445 AERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYAS 504

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           AGRW+DVAK+R +M    +KK P  +W+E+EN +H F   D THPQ +EI      +S K
Sbjct: 505 AGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGK 564

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           ++  GY+PDT+  L  VD++ +   L  HSEKLA+AF L+ TP G+ IRI KN+RVCGDC
Sbjct: 565 IKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDC 624

Query: 541 HSFIKHVSAI 550
           H+ IK VS I
Sbjct: 625 HAAIKFVSKI 634


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 313/560 (55%), Gaps = 63/560 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH  ++    + N+ V N LL  Y+ H  + +   LF  M E D +S++V++  ++  
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWN 320

Query: 137 ADFINCFETFR--EFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDID 192
             F   F+ FR  +F R     D    PF  ++       ++ MGR IH   +  G + +
Sbjct: 321 GQFKESFDLFRKLQFTR----FDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFE 376

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQM------PTRDLVTWTVMIGANK----------- 235
             V  ALVDMYAKC    +A+++FD +      P   +++  V  G ++           
Sbjct: 377 SRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRR 436

Query: 236 -------------------------------------FLLDVILGTAVIDMYAKCGSIDS 258
                                                F+ +V  G+A++D YAKCG +  
Sbjct: 437 TGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A + F  M ++N +SW+A+I+AY  +G     L+ F  M+ S   P+ ++F+S+L ACSH
Sbjct: 497 AIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSH 556

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G VEE L  F+SM   + V P  +HYT MVD+L R GR DEA KL+  M  E  E +W 
Sbjct: 557 CGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWS 616

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           ++L +CRIHKN +LA+ AA  L   +  ++   Y+ +SN+YA AG+W +VAK++  M  R
Sbjct: 617 SVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDR 676

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            ++K+P ++W+E++++ H FS  D +HP+ ++I R +  LS+++E  GY PDT   LHDV
Sbjct: 677 GVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDV 736

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           DE +K+ +L  HSE+ AIAF L+ TP+G+ I +MKNLR C DCH+ IK +S I  R IIV
Sbjct: 737 DEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIV 796

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD++RFHHF+ G CSC DYW
Sbjct: 797 RDSSRFHHFKDGVCSCGDYW 816



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 168/378 (44%), Gaps = 58/378 (15%)

Query: 68  LSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           L  +N+  I Q+H  ++  G   NL+V N L+  Y     L  A  LF  M  +D+V+++
Sbjct: 153 LETKNV--IVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFN 210

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            ++ G+S         E F E    G++   +T   ++ A     D   G+ +H  VLK+
Sbjct: 211 SLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKT 270

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------- 233
               + FV  AL+D Y+K   +D+  +LF +MP  D +++ V+I +              
Sbjct: 271 NFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLF 330

Query: 234 ----------NKFLLDVILGTA------------------------------VIDMYAKC 253
                      +F    +L  A                              ++DMYAKC
Sbjct: 331 RKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKC 390

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
                A++IFD +  K+ + W+AMI+AY   G+ ++ +++F  M  + V  ++ TF S+L
Sbjct: 391 NGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASIL 450

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            AC++   +  G +L S +        +V   + ++D   + G + +A+K    M  E++
Sbjct: 451 RACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERN 508

Query: 374 EGLWGALLGACRIHKNVD 391
              W AL+ A   + NVD
Sbjct: 509 SVSWNALISAYAQNGNVD 526



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 185/457 (40%), Gaps = 105/457 (22%)

Query: 69  SCRNIFQIRQ-------VHA-QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +CR+ FQ+         VHA Q+       N I  N ++  +     L+ A  LF+GM E
Sbjct: 43  TCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVE 102

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R +VSW++++GG+ +       F  + +  R G++ D  TL  ++    + +   +   I
Sbjct: 103 RTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQI 162

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GAN 234
           H  V+K G + +  VC +LVD Y K   +  A QLF  M  +D VT+  ++      G N
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 235 K------------------------------------------------FLLDVILGTAV 246
           +                                                F+ +V +G A+
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNAL 282

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +D Y+K   +D   ++F  M + + IS++ +I +Y ++GQ K++ DLF  +  +R    +
Sbjct: 283 LDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQ 342

Query: 307 ITFVSLLYACSHT--------------------------GLVE-----EGLRLFSSMWDD 335
             F +LL   + +                           LV+      G +    ++D+
Sbjct: 343 FPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDN 402

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDL 392
            A +  V  +T M+    + G+ +E + +   M    V  D+  + ++L AC    ++ L
Sbjct: 403 IACKSTVP-WTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISL 461

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
                 SLL R          +SNVY+ +      AK
Sbjct: 462 GRQ-LHSLLIRSG-------FMSNVYSGSALLDTYAK 490


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 313/572 (54%), Gaps = 71/572 (12%)

Query: 12  SISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR 71
           S++  LR F+SS    +AL  H     P          PD   T +  P      L +C 
Sbjct: 92  SLNTVLRIFASSARPRVALALHRRHLAP----------PD---THTYPPL-----LQACA 133

Query: 72  NIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSW 126
            +  +R    +HA+    G ++ + V N L+++Y        AH +F+ +   ER+ VSW
Sbjct: 134 RLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSW 193

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + ++ GF+           FRE +      D +T+  V+ AC +   + +GR +H  V K
Sbjct: 194 NSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAK 253

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
            GL                   + +A                              G A+
Sbjct: 254 VGL-------------------VGNAHA----------------------------GNAL 266

Query: 247 IDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ID+YAKCG +D AR++F  M   + V+SW+++I     +G G  AL LF MM   +++P 
Sbjct: 267 IDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPT 326

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            IT V +LYACSH GLV++G R F  M  ++ + P ++H  CMVDLLGRAGR++EA   I
Sbjct: 327 EITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYI 386

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            +M +E +  +W  LLGAC +HK +++ E A   L+E  P + G YVLLSN+YA  GRW 
Sbjct: 387 TTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWA 446

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           DV  +R  M    ++K PG + +E+ N +++F +GD +HP++++IY ML  ++E+L   G
Sbjct: 447 DVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQG 506

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           YIP T+  L D+++E K   L  HSE+LAIAF L+ +  GT IRI+KNLRVCGDCH  IK
Sbjct: 507 YIPHTSNVLADIEDEEKESALNYHSERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIK 566

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S +  R IIVRD +RFHHF+GGACSC+DYW
Sbjct: 567 LISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/493 (42%), Positives = 294/493 (59%), Gaps = 18/493 (3%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   NLI++N +L +Y    +L DA  LF+ M+E+D VSW+ M+ G++KV D+      F
Sbjct: 262 GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVF 321

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
               R  +   +  +    +  + ++ + + R   ++ L      ++   A+ +   A C
Sbjct: 322 DVMPREDITAWNALISSYQQNGKPKEALAIFR---ELQLNKNTKPNEVTLASTL---AAC 375

Query: 207 KVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDR 265
                      Q+   DL  W  V I      L+  + T++IDMY+KCG ++ A E+F  
Sbjct: 376 A----------QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYS 425

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           + +++V  WSAMIA    HG G+ A+DLF  M  ++V PN +TF +LL ACSH+GLV+EG
Sbjct: 426 VERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEG 485

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
              F+ M   + V P  KHY CMVD+LGRAG L+EA++LIE M +     +WGALLGACR
Sbjct: 486 RLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACR 545

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           I+ NV+LAEMA   LLE    N G YVLLSN+YA AG+W  V+++R  M    L+K PG 
Sbjct: 546 IYGNVELAEMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGC 605

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE-VKVG 504
           + IEV   IH+F VGD++HP S EIY  L  +  +++  GY+ D +  L  V+EE +K  
Sbjct: 606 SSIEVNGIIHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEH 665

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L  HSEKLAIA+GLI       IRI+KNLRVCGDCHS  K +S +  R I++RD  RFH
Sbjct: 666 ALNLHSEKLAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFH 725

Query: 565 HFEGGACSCRDYW 577
           HF GG CSC DYW
Sbjct: 726 HFSGGNCSCMDYW 738



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 178/336 (52%), Gaps = 19/336 (5%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           +F  S    F I +     ++   + +H  ++     ++L ++N L++ Y+    L  A+
Sbjct: 127 RFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAY 186

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+ + E+D VSW+ M+ GF +        + F+       + +  T+  V+ AC  R 
Sbjct: 187 LVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRI 246

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
           D+  GR   D + ++G+DI+  +  A++DMY KC  ++DAR+LFD+M  +D+V+WT M  
Sbjct: 247 DLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTM-- 304

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                         ID YAK G  D+AR +FD M ++++ +W+A+I++Y  +G+ K+AL 
Sbjct: 305 --------------IDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALA 350

Query: 293 LF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
           +F  + L+    PN +T  S L AC+  G ++ G  +   +     ++ +    T ++D+
Sbjct: 351 IFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ-GIKLNFHITTSLIDM 409

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             + G L++AL++  S+   +D  +W A++    +H
Sbjct: 410 YSKCGHLEKALEVFYSVE-RRDVFVWSAMIAGLAMH 444



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 154/361 (42%), Gaps = 33/361 (9%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFNGMKERDSVSWS 127
           C N   ++Q+HA ++  G   +   A KL    AL    +L  A  +F+ +   +  +W+
Sbjct: 40  CANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWN 99

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
            ++  F+     I     F + +    +  +SYT PFVI+A  +   ++ G+ IH +V+K
Sbjct: 100 TLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMK 159

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
           +    D F+  +L+  Y+    +D A  +F ++  +D+V+W  MI               
Sbjct: 160 ASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISG------------- 206

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL------FPMMLSS 300
              + + GS + A ++F RM+ +N  +    +   G      K +DL         +  +
Sbjct: 207 ---FVQGGSPEEALQLFKRMKMEN--ARPNRVTMVGVLSACAKRIDLEFGRWACDYIERN 261

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            +  N I   ++L      G +E+  RLF  M +      D+  +T M+D   + G  D 
Sbjct: 262 GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK-----DIVSWTTMIDGYAKVGDYDA 316

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A ++ + M  E D   W AL+ + + +     A    + L   +   P    L S + A 
Sbjct: 317 ARRVFDVMPRE-DITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAAC 375

Query: 421 A 421
           A
Sbjct: 376 A 376



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 142/343 (41%), Gaps = 74/343 (21%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-----IDDARQ 214
           T+P +I  C ++K +   + +H  +L++GL  D     +   ++  C +     +D A +
Sbjct: 32  TVPILIDKCANKKHL---KQLHAHMLRTGLFFDP---PSATKLFTACALSSPSSLDYACK 85

Query: 215 LFDQMPTRDLVTWTVMIGA-------------------------NKFLLDVILGTA---- 245
           +FDQ+P  +L TW  +I A                         N +    ++  A    
Sbjct: 86  VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145

Query: 246 --------------------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                     +I  Y+  G +DSA  +F ++ +K+++SW++MI+
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS 205

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            +   G  ++AL LF  M      PNR+T V +L AC+    +E G R      +   + 
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG-RWACDYIERNGID 264

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
            ++     M+D+  + G L++A +L + M  EKD   W  ++       + D    AA+ 
Sbjct: 265 INLILSNAMLDMYVKCGSLEDARRLFDKME-EKDIVSWTTMIDGYAKVGDYD----AARR 319

Query: 400 LLERQPQN--PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           + +  P+        L+S+   N    + +A  R+L   +  K
Sbjct: 320 VFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTK 362



 Score = 45.1 bits (105), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 105/264 (39%), Gaps = 38/264 (14%)

Query: 35  HEQNPMNPRVPMQMGPDCQFTRSVDPK--FFISSLLSCRNIFQIR---QVHAQIVAGGTL 89
           ++QN   P+  + +  + Q  ++  P      S+L +C  +  +     +H  I   G  
Sbjct: 339 YQQNG-KPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIK 397

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            N  +   L+ +Y+    L  A  +F  ++ RD   WS M+ G +         + F + 
Sbjct: 398 LNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKM 457

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRL-------IHDIVLKSGLDIDQFVCAALVDM 202
               ++ ++ T   ++ AC     +  GRL       ++ +V  S      + C  +VD+
Sbjct: 458 QETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGS----KHYAC--MVDI 511

Query: 203 YAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLDVIL----------------GTA 245
             +   +++A +L ++MP       W  ++GA +   +V L                G  
Sbjct: 512 LGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAY 571

Query: 246 VI--DMYAKCGSIDSAREIFDRMR 267
           V+  ++YAK G  D    +   M+
Sbjct: 572 VLLSNIYAKAGKWDCVSRLRQHMK 595


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/538 (39%), Positives = 297/538 (55%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   L+ +Y+    +  A  LF  +   D ++++ M+ GF+         + FRE +  G
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
            ++ S T+  +I        + +   IH   +KSG+ ++  V  A   +Y K   ID AR
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365

Query: 214 QLFDQMP-----------------------------------TRDLVTWTVMIGANKFLL 238
            LFD+ P                                   T + VT T ++ A   L 
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425

Query: 239 DVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
            +  G                   TA++DMYAKCG+I  A ++FD M +KN ++W+ MI 
Sbjct: 426 SLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIF 485

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            YG HG G +AL L+  ML     P+ +TF+S+LYACSH GLV EG  +F +M + + + 
Sbjct: 486 GYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIE 545

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HY CMVD+LGR+G+L++AL+ I+ M VE    +WG LLGAC IHK+ D+A +A++ 
Sbjct: 546 PLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASER 605

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           L E  P + G+YVLLSN+Y+    +   A IR ++ +R+L K PG T IEV    H F  
Sbjct: 606 LFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVS 665

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           GD +H  + +IY  L  L+ K+   GY  +T   LHDV+EE K   +  HSEKLAIAFGL
Sbjct: 666 GDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGL 725

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I T  G  IRI+KNLRVC DCH+  K +S IT RVI+VRDANRFHHF+ G CSC DYW
Sbjct: 726 ITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 187/417 (44%), Gaps = 57/417 (13%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           S D   +  ++ +C N   +  +HA  +  G  +N+ V + L+ +Y     +  A  +F+
Sbjct: 108 SPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFD 167

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           GM ERD+V W+ M+ G  K   F +  + FRE +  G+++DS T+  V+ A  + +++ +
Sbjct: 168 GMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKV 227

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---A 233
           G  I  + LK G     +V   L+ +Y+KC  ++ AR LF ++   DL+ +  MI    A
Sbjct: 228 GMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTA 287

Query: 234 N-------KFLLDVILG---------TAVIDMYAKCGSIDSA------------------ 259
           N       K   +++             +I +++  G +  A                  
Sbjct: 288 NGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTV 347

Query: 260 ----REIFDRMRQ-------------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
                 I++++ +             K V++W+AMI+ Y  +G  + A+ LF  M+ +  
Sbjct: 348 STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEF 407

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN +T  ++L AC+  G +  G +    +     + P++   T +VD+  + G + EA 
Sbjct: 408 TPNAVTITTILSACAQLGSLSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAW 466

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +L +SMS EK+   W  ++    +H     A      +L     NP     LS +YA
Sbjct: 467 QLFDSMS-EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLG-YNPSAVTFLSVLYA 521



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 182/456 (39%), Gaps = 98/456 (21%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            + Q HAQ +  G   +L    KL        A   A ALF  + + D   ++V+V GFS
Sbjct: 27  HLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFS 86

Query: 135 ---KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
                +  I+ +   R      +  D++T  F + AC + K ++   L+H   +  G   
Sbjct: 87  LNDSPSSSISLYTHLRR--NTNLSPDNFTYAFAVAACSNDKHLM---LLHAHSIIDGYGS 141

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT----------------------- 228
           + FV +ALVD+Y K   +  AR++FD MP RD V W                        
Sbjct: 142 NVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMV 201

Query: 229 -------------------------VMIGANKFLLDVILG------TAVIDMYAKCGSID 257
                                    V +G     L +  G      T +I +Y+KCG ++
Sbjct: 202 ADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVN 261

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS----------RVLPNRI 307
           +AR +F R+ + ++I+++AMI+ +  +G  + ++ LF  +L S           ++P   
Sbjct: 262 TARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHS 321

Query: 308 TFVSLLYACS-HTGLVEEGLRL-------FSSMWD------------DFAVRPDVKHYTC 347
            F  L  ACS H   V+ G+ L       F+++++            D +    V  +  
Sbjct: 322 PFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNA 381

Query: 348 MVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           M+    + G  + A+ L + M       +      +L AC    ++   +     L++ +
Sbjct: 382 MISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKW-VHHLIKSE 440

Query: 405 PQNPGHYV--LLSNVYANAGRWQDVAKIRDLMTRRR 438
              P  YV   L ++YA  G   +  ++ D M+ + 
Sbjct: 441 NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKN 476


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/515 (40%), Positives = 301/515 (58%), Gaps = 42/515 (8%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS---KVADFINCFETF- 146
           N+I    ++  Y  +K +  A  LF  M E+  VSW+ M+ G++   ++ D    FE   
Sbjct: 202 NVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMP 261

Query: 147 -REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            +  I C           +I A  +  +IV  R + D +     D D      ++  Y +
Sbjct: 262 MKPVIACNA---------MIVALGEVGEIVKARRVFDQME----DRDNATWRGMIKAYER 308

Query: 206 CKVIDDARQLFDQM------PTRDLVTWTVMIGAN-----------------KFLLDVIL 242
                +A +LF QM      P+   +   + + A                  +F  DV +
Sbjct: 309 KGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYV 368

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            + ++ MY KCG +  A+ +FDR   K++I W+++I+ Y  HG G++AL +F  M  S  
Sbjct: 369 ASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGT 428

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           +PN++T +++L ACS+ G +EEGL +F SM   F V P V+HY+C VD+LGRAG++D+A+
Sbjct: 429 MPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAM 488

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           +LI SM+++ D  +WGALLGAC+ H  +DLAE+AAK L E +P+N G Y+LLS++ A+  
Sbjct: 489 ELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRS 548

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD-STHPQSEEIYRMLVTLSEKL 481
           +W DVA++R  M  + + K PG +WIEV  K+H F+ G    HP+   I  ML      L
Sbjct: 549 KWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLL 608

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
             AGY PD +  LHDVDEE KV +L  HSE+LA+A+GL+  PEG  IR+MKNLRVCGDCH
Sbjct: 609 REAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCH 668

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           + IK +S +T R II+RDANRFHHF  G CSCRDY
Sbjct: 669 AAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 142/325 (43%), Gaps = 66/325 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N++  N L+  Y  ++ + +A  +F  M ER+ VSW+ MV G                ++
Sbjct: 78  NIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKG----------------YV 121

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           + GM +++  L + +    +    VM                      L+D       ID
Sbjct: 122 QEGMVVEAELLFWRMPERNEVSWTVM-------------------FGGLID----GGRID 158

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           DAR+L+D MP +D+V  T MIG                   + G +D AREIFD MR++N
Sbjct: 159 DARKLYDMMPGKDVVASTNMIGG----------------LCREGRVDEAREIFDEMRERN 202

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VI+W+ MI  YG + +   A  LF +M         +++ S+L   + +G +E+    F 
Sbjct: 203 VITWTTMITGYGQNKRVDVARKLFEVMPEK----TEVSWTSMLLGYTLSGRIEDAEEFFE 258

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M     ++P V     M+  LG  G + +A ++ + M  ++D   W  ++ A    K  
Sbjct: 259 VM----PMKP-VIACNAMIVALGEVGEIVKARRVFDQME-DRDNATWRGMIKAYE-RKGF 311

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLS 415
           +L  +   + ++RQ   P    L+S
Sbjct: 312 ELEALELFAQMQRQGVRPSFPSLIS 336



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/238 (25%), Positives = 110/238 (46%), Gaps = 31/238 (13%)

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           ++V  Y    +  +ARQ+FD+MP R++V+W  ++                  Y K   I+
Sbjct: 53  SIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSG----------------YIKNRMIE 96

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR +F+ M ++NV+SW+AM+  Y   G   +A  LF  M       N +++  +     
Sbjct: 97  EARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPER----NEVSWTVMFGGLI 152

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G +++  +L+     D     DV   T M+  L R GR+DEA ++ + M  E++   W
Sbjct: 153 DGGRIDDARKLY-----DMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMR-ERNVITW 206

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPG-HYVLLSNVYANAGRWQDVAKIRDLM 434
             ++     +K VD+    A+ L E  P+     +  +   Y  +GR +D  +  ++M
Sbjct: 207 TTMITGYGQNKRVDV----ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 13/190 (6%)

Query: 56  RSVDPKF--FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
           + V P F   IS L  C  +  +   RQVHA +V      ++ VA+ L+ +Y     L  
Sbjct: 325 QGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVK 384

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+    +D + W+ ++ G++         + F E    G   +  TL  ++ AC  
Sbjct: 385 AKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSY 444

Query: 171 RKDIVMGRLIHDIVLKSGL----DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLV 225
              +  G  I +  ++S       ++ + C   VDM  +   +D A +L + M  + D  
Sbjct: 445 GGKLEEGLEIFE-SMESKFCVTPTVEHYSCT--VDMLGRAGKVDKAMELINSMTIKPDAT 501

Query: 226 TWTVMIGANK 235
            W  ++GA K
Sbjct: 502 VWGALLGACK 511



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 26/205 (12%)

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I   ++ G I+ AR+ FD +R K + SW+++++ Y  +G  ++A  +F  M       N 
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPER----NI 79

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           +++  L+       ++EE   +F  M +      +V  +T MV    + G + EA  L  
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEIMPER-----NVVSWTAMVKGYVQEGMVVEAELLFW 134

Query: 367 SMSVEKDEGLW----GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS-NVYANA 421
            M  E++E  W    G L+   RI     L +M            PG  V+ S N+    
Sbjct: 135 RMP-ERNEVSWTVMFGGLIDGGRIDDARKLYDMM-----------PGKDVVASTNMIGGL 182

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWT 446
            R   V + R++    R + +  WT
Sbjct: 183 CREGRVDEAREIFDEMRERNVITWT 207


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 313/560 (55%), Gaps = 63/560 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH  ++    + N+ V N LL  Y+ H  + +   LF  M E D +S++V++  ++  
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWN 320

Query: 137 ADFINCFETFR--EFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDID 192
             F   F+ FR  +F R     D    PF  ++       ++ MGR IH   +  G + +
Sbjct: 321 GQFKESFDLFRKLQFTR----FDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFE 376

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQM------PTRDLVTWTVMIGANK----------- 235
             V  ALVDMYAKC    +A+++FD +      P   +++  V  G ++           
Sbjct: 377 SRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRR 436

Query: 236 -------------------------------------FLLDVILGTAVIDMYAKCGSIDS 258
                                                F+ +V  G+A++D YAKCG +  
Sbjct: 437 TGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTD 496

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A + F  M ++N +SW+A+I+AY  +G     L+ F  M+ S   P+ ++F+S+L ACSH
Sbjct: 497 AIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSH 556

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
            G VEE L  F+SM   + V P  +HYT MVD+L R GR DEA KL+  M  E  E +W 
Sbjct: 557 CGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWS 616

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
           ++L +CRIHKN +LA+ AA  L   +  ++   Y+ +SN+YA AG+W +VAK++  M  R
Sbjct: 617 SVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDR 676

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            ++K+P ++W+E++++ H FS  D +HP+ ++I R +  LS+++E  GY PDT   LHDV
Sbjct: 677 GVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDV 736

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           DE +K+ +L  HSE+ AIAF L+ TP+G+ I +MKNLR C DCH+ IK +S I  R IIV
Sbjct: 737 DEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACTDCHAAIKVISQIVEREIIV 796

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD++RFHHF+ G CSC DYW
Sbjct: 797 RDSSRFHHFKDGVCSCGDYW 816



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 168/378 (44%), Gaps = 58/378 (15%)

Query: 68  LSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           L  +N+  I Q+H  ++  G   NL+V N L+  Y     L  A  LF  M  +D+V+++
Sbjct: 153 LETKNV--IVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFN 210

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            ++ G+S         E F E    G++   +T   ++ A     D   G+ +H  VLK+
Sbjct: 211 SLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKT 270

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------- 233
               + FV  AL+D Y+K   +D+  +LF +MP  D +++ V+I +              
Sbjct: 271 NFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLF 330

Query: 234 ----------NKFLLDVILGTA------------------------------VIDMYAKC 253
                      +F    +L  A                              ++DMYAKC
Sbjct: 331 RKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKC 390

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
                A++IFD +  K+ + W+AMI+AY   G+ ++ +++F  M  + V  ++ TF S+L
Sbjct: 391 NGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASIL 450

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            AC++   +  G +L S +        +V   + ++D   + G + +A+K    M  E++
Sbjct: 451 RACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP-ERN 508

Query: 374 EGLWGALLGACRIHKNVD 391
              W AL+ A   + NVD
Sbjct: 509 SVSWNALISAYAQNGNVD 526



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 185/457 (40%), Gaps = 105/457 (22%)

Query: 69  SCRNIFQIRQ-------VHA-QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +CR+ FQ+         VHA Q+       N I  N ++  +     L+ A  LF+GM E
Sbjct: 43  TCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVE 102

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R +VSW++++GG+ +       F  + +  R G++ D  TL  ++    + +   +   I
Sbjct: 103 RTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQI 162

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GAN 234
           H  V+K G + +  VC +LVD Y K   +  A QLF  M  +D VT+  ++      G N
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 235 K------------------------------------------------FLLDVILGTAV 246
           +                                                F+ +V +G A+
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNAL 282

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +D Y+K   +D   ++F  M + + IS++ +I +Y ++GQ K++ DLF  +  +R    +
Sbjct: 283 LDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQ 342

Query: 307 ITFVSLLYACSHT--------------------------GLVE-----EGLRLFSSMWDD 335
             F +LL   + +                           LV+      G +    ++D+
Sbjct: 343 FPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDN 402

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDL 392
            A +  V  +T M+    + G+ +E + +   M    V  D+  + ++L AC    ++ L
Sbjct: 403 IACKSTVP-WTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISL 461

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
                 SLL R          +SNVY+ +      AK
Sbjct: 462 GRQ-LHSLLIRSG-------FMSNVYSGSALLDTYAK 490


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/590 (36%), Positives = 331/590 (56%), Gaps = 62/590 (10%)

Query: 44  VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQ-IVAGGTLTNLIVANKLLYIY 102
           VP  + PD +FT S   K F    L    + + ++ H Q +V G  ++N+ V + L+ +Y
Sbjct: 168 VPDGILPD-EFTFSSVFKAFSDLGL----VHEGQRAHGQSVVLGVGVSNVFVGSALVDMY 222

Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
           A    + DA  + + +  +D V ++ ++ G+S   +     + FR   + G++ + YTL 
Sbjct: 223 AKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLS 282

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            V+  C + +D+  GRLIH +++K+GL+       +L+ MY +C ++DD+ ++F Q    
Sbjct: 283 SVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINP 342

Query: 223 DLVTWT-VMIG-----------------------ANKFLLDVIL---------------- 242
           + VTWT V++G                        N F L  +L                
Sbjct: 343 NQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIH 402

Query: 243 --------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                         G A+ID Y KCGS + AR +F+ + + +V+S ++MI +Y  +G G 
Sbjct: 403 AIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGH 462

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL LF  M  + + PN +T++ +L AC++ GL+EEG  +FSS  +   +     HY CM
Sbjct: 463 EALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACM 522

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGRAGRL EA  LI  +++  D  +W  LL ACRIH +V++A+     +++  P++ 
Sbjct: 523 VDLLGRAGRLKEAEMLINQVNIS-DVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDG 581

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
           G +VLLSN+YA+ G W  V +++  M   RLKK P  +W++VE +IH F  GD +HP   
Sbjct: 582 GTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFR 641

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI-ATPEGTH 527
           +I   L  L EK++  GY+PDT F L D+DEE K+ +LY HSEKLA+AF L  +  + T 
Sbjct: 642 DIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTT 701

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IRI+KNLRVCGDCH+++K VS I  R II RD  RFHHF  G CSC DYW
Sbjct: 702 IRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 83/140 (59%), Gaps = 1/140 (0%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG  +ID Y KCGS+  AR++FD +  +++++W++MIA+Y  +G+ K+A+D++  M+   
Sbjct: 112 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 171

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +LP+  TF S+  A S  GLV EG R             +V   + +VD+  + G++ +A
Sbjct: 172 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA 231

Query: 362 LKLIESMSVEKDEGLWGALL 381
            +L+    V KD  L+ AL+
Sbjct: 232 -RLVSDQVVGKDVVLFTALI 250



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 156/354 (44%), Gaps = 53/354 (14%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            I   +  ++I  I ++ +  +  G   +L   NKL+  Y    ++  A  +F+ +  R 
Sbjct: 83  LIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFDEVPHRH 140

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI-VMGRLIH 181
            V+W+ M+  +                               IR  R ++ I +  R++ 
Sbjct: 141 IVAWNSMIASY-------------------------------IRNGRSKEAIDIYQRMVP 169

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
           D +L      D+F  +++   ++   ++ + ++   Q         +V++G    + +V 
Sbjct: 170 DGILP-----DEFTFSSVFKAFSDLGLVHEGQRAHGQ---------SVVLGVG--VSNVF 213

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +G+A++DMYAK G +  AR + D++  K+V+ ++A+I  Y +HG+  ++L +F  M    
Sbjct: 214 VGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKG 273

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  N  T  S+L  C +   +  G RL   +     +   V   T ++ +  R G +D++
Sbjct: 274 IEANEYTLSSVLVCCGNLEDLTSG-RLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDS 332

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           LK+ +   +  ++  W +++     +   ++A +  + +L R    P  + L S
Sbjct: 333 LKVFKQF-INPNQVTWTSVIVGLVQNGREEIALLKFRQML-RSSITPNSFTLSS 384


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/502 (38%), Positives = 290/502 (57%), Gaps = 14/502 (2%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   V  G   +  V   L+ +Y       +   +F+     D  S + ++ G S+ 
Sbjct: 177 QQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRN 236

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           A        F+EF+  G++L+  +   ++  C ++ KD+       ++  + G + +   
Sbjct: 237 AQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQ-GTEPNSVT 295

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
              ++  +A    +         M  R    + +  G   FL DV + +A++DMYAKCG 
Sbjct: 296 IPCVLPAFANVAAL---------MHGRSAHCFALRKG---FLHDVYVSSALVDMYAKCGR 343

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +  AR IFD M  +NV+SW+AMI  Y  +G+   A+ +F  ML  +  P+ +TF  LL A
Sbjct: 344 VKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAA 403

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+  GL EEG   F  M +++ V P ++HY CMV LLGRAG+LDEA  LI  M  E D  
Sbjct: 404 CTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAY 463

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           +WG+LLG+CR+H NVDLAE+AA+ L   +P+N G+YVLLSN+YA+   W  V ++R++M 
Sbjct: 464 IWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMK 523

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
              LKK  G +WIE++NK+H    GD +HP    I   +  L+ ++   G++P T+F LH
Sbjct: 524 DVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLH 583

Query: 496 DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           DV+E+ K   L  HSEKLA+A GLI+T  GT +R++KNLR+CGDCH  +K +S+   R I
Sbjct: 584 DVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREI 643

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
            VRD NRFHHF GG CSC D+W
Sbjct: 644 SVRDTNRFHHFSGGKCSCGDFW 665



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 61/368 (16%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           DP    ++  SC  +   R +HA     G   +  VA+ LL+ Y       +A ALF+GM
Sbjct: 19  DPHLLPTAFKSCPTLPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGM 78

Query: 119 K--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCG----------------------- 153
              +R  V WS +V   +   D    +    E  R G                       
Sbjct: 79  PRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRAR 138

Query: 154 --------------MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
                         ++ D+  +   + A  D   + +G+ +H   +K+G   D  V  AL
Sbjct: 139 DAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTAL 198

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
           +DMY KC    +  ++FD+    D+ +   +I        V            C ++   
Sbjct: 199 IDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQV------------CEALRLF 246

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           +E  DR  + NV+SW++++A    +G+  +A++ F  M +    PN +T   +L A ++ 
Sbjct: 247 KEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANV 306

Query: 320 GLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
             +  G          FA+R     DV   + +VD+  + GR+ +A  + ++M V ++  
Sbjct: 307 AALMHGRSAHC-----FALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTM-VSRNVV 360

Query: 376 LWGALLGA 383
            W A++G 
Sbjct: 361 SWNAMIGG 368


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 297/541 (54%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++ N ++      K + +A  LF  M +RD ++W+ MV GF++          FR   
Sbjct: 205 NVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMR 264

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D YT   ++ AC     +  G+ IH  ++++  D + FV +ALVDMY+KC+ I 
Sbjct: 265 FQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIK 324

Query: 211 DARQLFDQMPTRDLVTWTVMI--------------------------------------- 231
            A   F +M  +++++WT +I                                       
Sbjct: 325 PAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCA 384

Query: 232 -------GANKFLLDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                  GA    L ++ G         A++ +Y KCGSI+ A  +FD M   + +SW+A
Sbjct: 385 NLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTA 444

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++  Y   G+ K+ +DLF  ML+  V P+ +TF+ +L ACS  G VE+G   F SM  D 
Sbjct: 445 LVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDH 504

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  R+GRL EA + I+ M +  D   WG LL ACR+  ++++ + A
Sbjct: 505 GIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWA 564

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A++LLE  PQNP  YVLL +++A  G W  VA++R  M  R++KK PG +WI+ +NK+H 
Sbjct: 565 AENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHI 624

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D +HP S+ IY  L  L+ K+   GY PD +  LHDV +  KV  +  HSEKLAIA
Sbjct: 625 FSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIA 684

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGL+  P    IRI+KNLRVC DCH+  K +S IT R I+VRDA RFH F  G CSC D+
Sbjct: 685 FGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDF 744

Query: 577 W 577
           W
Sbjct: 745 W 745



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 175/383 (45%), Gaps = 58/383 (15%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL   A  + L D  +LF  M +RD+VS++ ++ GFS           +   +
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 151 RCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
           R G  +     T+  ++ A     D  +GR  H  +L+ G  ++ FV + LV MYAK  +
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           I DA+++FD+M  +++V +  MI            T ++    +C  ++ AR +F+ M  
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMI------------TGLL----RCKMVEEARRLFEVMTD 234

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           ++ I+W+ M+  +  +G   +AL+ F  M    +  ++ TF S+L AC     +E+G ++
Sbjct: 235 RDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQI 294

Query: 329 FS----SMWDDF---------------AVRP-----------DVKHYTCMVDLLGRAGRL 358
            +    + +DD                +++P           ++  +T ++   G+ G  
Sbjct: 295 HAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCS 354

Query: 359 DEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           +EA+++   M    ++ D+   G+++ +C    N+   E  A+           HY+ +S
Sbjct: 355 EEAVRVFSEMQRDGIDPDDFTLGSVISSC---ANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 416 N----VYANAGRWQDVAKIRDLM 434
           N    +Y   G  +D  ++ D M
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEM 434



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 18/124 (14%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           L+  Y K      AR++FD  P  +L T+                 A++   A    +D 
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTY----------------NALLSTLAHARLLDD 90

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYAC 316
              +F  M Q++ +S++A+IA +   G   +A+ L+  +L   S V P+RIT  +++ A 
Sbjct: 91  MDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAA 150

Query: 317 SHTG 320
           S  G
Sbjct: 151 SALG 154


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 313/575 (54%), Gaps = 69/575 (12%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI--------YALHKALTDAHALFNGMKER 121
           C  + ++ Q+HA I+  G   N ++  K            YA       +H         
Sbjct: 28  CNTLSKLTQIHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSY 87

Query: 122 DSVSWSVMVGGFSKVADF-INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           D+  ++ ++  +S+  D   N F  +R  +R G+  + +T PFV++ C     + +G+ +
Sbjct: 88  DAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCV 147

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDD----ARQLFDQMPTRDLVTWT------VM 230
           H  V+K G + D  V   L+ MY  C + +D    A ++FD  P  D VTW+      V 
Sbjct: 148 HGCVVKFGFEEDVHVLNTLIHMY--CCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVR 205

Query: 231 IGANKFLLD------------------------------------------------VIL 242
           +G +   +D                                                V L
Sbjct: 206 LGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVEL 265

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             A+IDM+AKCG++D A ++F +M  + ++SW+++IA    HG+G  A+ LF  M+ + +
Sbjct: 266 CNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGI 325

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ + F+ +L ACSH+GLV++G   F SM  +F++ P V+HY CMVDLL R G + EA 
Sbjct: 326 TPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAF 385

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + ++ M  E ++ +W  ++ AC     + L E  +K L++ +P +  +YVLLSN+YA   
Sbjct: 386 EFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLR 445

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           +W+   K+R++M  R +KK+PG T IEV N++++F  GD +H Q +EIY M+  +  +++
Sbjct: 446 QWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIK 505

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
            AGY+P T+  L D+DEE K   LY HSEKLAIAF L+ TP GT IRI+KNLRVC DCHS
Sbjct: 506 KAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHS 565

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K +S +  R I+VRD NRFHHF+ G CSCRD+W
Sbjct: 566 ATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/571 (35%), Positives = 323/571 (56%), Gaps = 58/571 (10%)

Query: 65  SSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           S L +C   R++   + ++  ++  G +    V N L+ +YA    +  A  +FN M+ +
Sbjct: 312 SVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECK 371

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D+VSW+ ++ G+ +  D +   + F+  +    Q D  T   +I       D+  G+ +H
Sbjct: 372 DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLH 431

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
              +KSG+ ID  V  AL+DMYAKC  + D+ ++F+ M T D VTW  +I A        
Sbjct: 432 SNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFA 491

Query: 234 -----------NKFLLDVI-----------------------------------LGTAVI 247
                      NK + D+                                    +G A+I
Sbjct: 492 TGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALI 551

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           +MY+KCG ++S+  +F+RM +++V++W+ MI AYG +G+G+KAL+ F  M  S ++P+ +
Sbjct: 552 EMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSV 611

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            F++L+YACSH+GLVE+GL  F  M   + + P ++HY C+VDLL R+ ++ +A + I++
Sbjct: 612 VFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQA 671

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M +E D  +W ++L ACR   +++ AE  ++ ++E  P +PG+ +L SN YA   +W  V
Sbjct: 672 MPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKV 731

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           + IR  +  + +KK PG++WIE+  K+H F  GD + PQSE I++ L  L   +   GYI
Sbjct: 732 SLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSLMAKEGYI 791

Query: 488 PDTNFELHDVDEEVKVGNLY-SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           PD+     +++EE +   L   HSE+LAIAFGL+ T  GT +++MKNLRVC DCH   K 
Sbjct: 792 PDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCSDCHEVTKL 851

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S I  R I+VRDANRFH F+ G CSC+D W
Sbjct: 852 ISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 208/451 (46%), Gaps = 61/451 (13%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           V   F   +L S  N+ ++R++HA +++ G   +   + KL+  Y+  +A   + ++F  
Sbjct: 5   VSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRR 64

Query: 118 MKERDSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           +    +V  W+ ++  FSK   F    E + +     +  D YT P VI+AC    D  M
Sbjct: 65  VSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEM 124

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           G L++  +L+ G + D +V  ALVDMY++  ++  ARQ+FD+MP RDLV+W  +I     
Sbjct: 125 GDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISG--- 181

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI----SWSAMIAAYG-----YHGQG 287
                        Y+  G  + A EI+  +R   ++    + S+++ A+        GQG
Sbjct: 182 -------------YSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQG 228

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
                L   + S  V+ N +  + L ++        +  R+F    D+  VR  V + T 
Sbjct: 229 LHGFTLKSGVNSVSVVNNGLLAMYLKFSRP-----TDARRVF----DEMVVRDSVTYNTM 279

Query: 348 MVDLLGRAGRLDEALKL-IESMSVEKDEGLW-GALLGACRIHKNVDLAE------MAAKS 399
           +   L +   ++E++K+ +E++   K + L   ++L AC   +++ LA+      + A  
Sbjct: 280 ICGYL-KLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGF 338

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI--------EVE 451
           +LE   +N     +L +VYA  G   D+   RD+      K    W  I        ++ 
Sbjct: 339 VLESTVKN-----ILIDVYAKCG---DMITARDVFNSMECKDTVSWNSIISGYIQSGDLM 390

Query: 452 NKIHQFSVGDSTHPQSEEI-YRMLVTLSEKL 481
             +  F +      Q++ I Y ML++LS +L
Sbjct: 391 EAMKLFKMMMIMEEQADHITYLMLISLSTRL 421


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/573 (36%), Positives = 327/573 (57%), Gaps = 58/573 (10%)

Query: 62  FFISSLLS-CRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHAL 114
           + +SS++S C  +  +R   Q+H+  +  G +++  V+  L+ +YA   + +++  A  +
Sbjct: 247 YSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKV 306

Query: 115 FNGMKERDSVSWSVMVGGF--SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           F  M   + +SW+ ++ G+  S V +  N    FRE +   ++ +  T   +++AC +  
Sbjct: 307 FKTMPRHNVMSWTALISGYVQSGVQEN-NVMALFREMLNESIRPNHITYSNLLKACANLS 365

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI- 231
           D   GR IH  VLK+ +     V  ALV MYA+   +++AR+ FDQ+   ++++ +  + 
Sbjct: 366 DQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVE 425

Query: 232 -----------------GANKFLLDVILGTA----------------------------- 245
                            G + F    +L  A                             
Sbjct: 426 TERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISN 485

Query: 246 -VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            ++ MYA+CG ++ A   FD M+  NVISW+++I+    HG  K+AL +F  M+ + V P
Sbjct: 486 SLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKP 545

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N +T++++L ACSH GLV+EG   F SM  D  + P ++HY C+VDLL R+G ++EA + 
Sbjct: 546 NDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQF 605

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I  M  + D  +W  LL ACR + N ++ E+AA  ++  +P++P  YVLLSN+YA+AG W
Sbjct: 606 INEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLW 665

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
            +VA+IR LM  + L K  G +W++V N IH+F  GD++HP + +IY  LVTL  +++  
Sbjct: 666 DEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDI 725

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+PDT+  LHD+ EE+K   L  HSEK+A+AFGLI T     +RI KNLRVC DCHS I
Sbjct: 726 GYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAI 785

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K++S  T R II+RD+NRFH  + G CSC +YW
Sbjct: 786 KYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 149/332 (44%), Gaps = 55/332 (16%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           T++ V   L+ ++A +  L  A  +F+G+ ER SV W++++  + +        E F   
Sbjct: 178 TDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHM 237

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV- 208
           +  G + D Y++  +I AC +   + +G+ +H + L+ GL  D  V   LVDMYAK K+ 
Sbjct: 238 LDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKME 297

Query: 209 --IDDARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVI--DM 249
             ++ AR++F  MP  ++++WT +I                  + L + I    +   ++
Sbjct: 298 RSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNL 357

Query: 250 YAKCGSI---DSAREIFDRMRQKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
              C ++   DS R+I   + + ++    +  +A+++ Y   G  ++A   F  +  + +
Sbjct: 358 LKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNI 417

Query: 303 LP-------------------------NRITFVSLLYACSHTGLVEEGLRLFS-SMWDDF 336
           L                          +  TF SLL A +  GL+ +G +L + SM   F
Sbjct: 418 LSMSPDVETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGF 477

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
             R D      +V +  R G L++A +  + M
Sbjct: 478 --RSDQGISNSLVSMYARCGYLEDACRAFDEM 507



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 58/216 (26%)

Query: 173 DIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQM-PTRDLVTWTVM 230
           D+ +GR +H  +L+S  LD D  V  +L+ MY+KC  ++ AR++FDQM   RDLV+WT M
Sbjct: 55  DLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAM 114

Query: 231 I------GA------------------NKFLL---------------------------- 238
                  GA                  N F L                            
Sbjct: 115 ASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTG 174

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               DV +G A+IDM+A+ G + +A+ +FD + ++  + W+ +I  Y   G   K ++LF
Sbjct: 175 FWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELF 234

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
             ML     P+  +  S++ AC+  G V  G +L S
Sbjct: 235 LHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHS 270



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 11/149 (7%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
           D ++  +++ MY+KCG++++AR +FD+M   ++++SW+AM +    +G  +++L L   M
Sbjct: 75  DAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEM 134

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR-----PDVKHYTCMVDLL 352
           L   + PN  T  +   AC      +E  RL   +   F ++      DV     ++D+ 
Sbjct: 135 LELGLRPNAFTLCAAARAC----FPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMF 190

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALL 381
            R G L  A ++ + + +E+   +W  L+
Sbjct: 191 ARNGDLVAAQRVFDGL-IERTSVVWTLLI 218


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/517 (39%), Positives = 307/517 (59%), Gaps = 20/517 (3%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +S+    R++   R+V + I       NL +AN +L +Y    ++ DA  LF+ M+E+D+
Sbjct: 241 LSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 300

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI-HD 182
           V+W+ M+ G++   D+    E  RE +    + D      +I A           L+ H+
Sbjct: 301 VTWTTMLDGYAISEDY----EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHE 356

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVI 241
           + L+  + ++Q     LV   + C           Q+   +L  W    I  N   ++  
Sbjct: 357 LQLQKNIKLNQIT---LVSTLSACA----------QVGALELGRWIHSYIKKNGIKMNFY 403

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           + +A+I MY+KCG ++ ARE+F+ + +++V  WSAMI     HG G +A+D+F  M  + 
Sbjct: 404 VTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEAN 463

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN +TF ++  ACSHTGLV+E   LF  M   + + P+ KHY C+VD+LGR+G L++A
Sbjct: 464 VKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKA 523

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           +K IE+M +     +WGALLGAC+IH N+ LAEMA   LLE +P+N G +VLLSN+YA +
Sbjct: 524 VKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVLLSNIYAKS 583

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           G+W +V+++R  M    LKK PG + IE++  IH+F  GD+ HP SE++Y  L  + EKL
Sbjct: 584 GKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKL 643

Query: 482 ELAGYIPDTNFELHDV-DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +  GY P+ +  L  + +EE+K  +L  HSEKLAI +GLI+T     IR++KNLR+CGDC
Sbjct: 644 KSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAIRVIKNLRMCGDC 703

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H+  K +S +  R IIVRD  RFHHF  G CSC D+W
Sbjct: 704 HAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 169/327 (51%), Gaps = 19/327 (5%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F I +     ++   + +H   +     +++ VAN L++ Y     L  A  +F  +KE+
Sbjct: 138 FLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 197

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D VSW+ M+ GF +        E F++     ++    T+  V+ AC   +D+  GR + 
Sbjct: 198 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVC 257

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
             + ++ ++++  +  A++DMY KC  I+DA++LFD M  +D VTWT M           
Sbjct: 258 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM----------- 306

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSS 300
                +D YA     ++ARE+ + M +K++++W+A+I+AY  +G+  +AL +F  + L  
Sbjct: 307 -----LDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQK 361

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            +  N+IT VS L AC+  G +E G R   S      ++ +    + ++ +  + G L++
Sbjct: 362 NIKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEK 420

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIH 387
           A ++  S+  ++D  +W A++G   +H
Sbjct: 421 AREVFNSVE-KRDVFVWSAMIGGLAMH 446



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 167/369 (45%), Gaps = 57/369 (15%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101
           PR P    P+   T +   +  IS +  C ++ Q++Q HA ++  G  ++   A+KL  I
Sbjct: 13  PRHPNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAI 72

Query: 102 YALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL--D 157
            AL    +L  A  +F+ + + +S +W+ ++  ++   D +     F + +    Q   +
Sbjct: 73  AALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPN 132

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
            YT PF+I+A  +   + +G+ +H + +KS +  D FV  +L+  Y  C  +D A ++F 
Sbjct: 133 KYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 192

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
            +  +D+V+W  MI                  + + GS D A E+F +M  ++V +    
Sbjct: 193 TIKEKDVVSWNSMING----------------FVQKGSPDKALELFKKMESEDVKA---- 232

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
                                      + +T V +L AC+    +E G R+ S + ++  
Sbjct: 233 ---------------------------SHVTMVGVLSACAKIRDLEFGRRVCSYI-EENR 264

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           V  ++     M+D+  + G +++A +L ++M  EKD   W  +L    I ++ +    AA
Sbjct: 265 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE----AA 319

Query: 398 KSLLERQPQ 406
           + +L   P+
Sbjct: 320 REVLNAMPK 328


>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
           [Vitis vinifera]
          Length = 603

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 323/587 (55%), Gaps = 73/587 (12%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFN 116
           + +  +S L  C ++ ++ ++HA I+  G   N  ++ KLL   A+    +L  A  +F+
Sbjct: 22  NARAILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFH 81

Query: 117 GMKERDSVSWSVMVGGFSKVAD--FINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKD 173
            +    + +W+ M+ GFS+      +     +   +     + D+YT  F+++AC + K+
Sbjct: 82  RIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKE 141

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF----------------- 216
               R +H  +++ G D D  +C  L+  YA   +I+ A ++F                 
Sbjct: 142 EGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISC 201

Query: 217 --------------DQMPTRD----------LVTWTVMIGA-------------NKFLLD 239
                         DQM   +          L++    +GA              + + +
Sbjct: 202 YCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVEN 261

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           + +G A+IDMYAKCGS+ SA  IF+ M +++V +W++MI  YG HG+G +A+  F  ML 
Sbjct: 262 IFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLM 321

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           + V PN ITF+ LL  CSH GLV+EG++ F  M  +F ++P +KHY CMVDL GRAG+L 
Sbjct: 322 AGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLK 381

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EAL++I S   + D  LW  LLG+C+IH+NV++ EMA ++L++      G  VLLS +YA
Sbjct: 382 EALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYA 441

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
            A   Q VA++R L+  R +K  PGW+WIEV +++H+F V D +HP S EIYR L  +  
Sbjct: 442 EAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIH 501

Query: 480 KLELAGY---------IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  L GY          P++N + +  +          HSEKLAIA+GL  TPEGT + I
Sbjct: 502 RASLVGYAMEESSLVAAPESNTQEYCWETSTSY-----HSEKLAIAYGLARTPEGTSLLI 556

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCH+F K VS    R IIVRD  RFHHF+GG CSC+++W
Sbjct: 557 VKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 603


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/561 (38%), Positives = 321/561 (57%), Gaps = 66/561 (11%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA ++  G+  +    + L+  YA       A  +F+ M    ++ ++ M+ G+S  +
Sbjct: 75  QLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNS 133

Query: 138 DFINCFETFREFIR-------CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             ++    FR+  R         + +++ TL  ++  C     + +G  +H   ++ G  
Sbjct: 134 KPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFV 193

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDV---- 240
            D  V  +LV MY KC  ++ AR++FD+M  RDL+TW  MI      G  + +L+V    
Sbjct: 194 TDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEM 253

Query: 241 --------------------------------------------ILGTAVIDMYAKCGSI 256
                                                        L  A+++MYA+CG++
Sbjct: 254 KLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNL 313

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             ARE+FDR  +K+V+SW+A+I  YG HG G+ AL+LF  M+ S V P++  FVS+L AC
Sbjct: 314 TRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSAC 373

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GL + GL  F  M   + ++P  +HY+C+VDLLGRAGRL+EA+ LI+SM V+ D  +
Sbjct: 374 SHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAV 433

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALLGAC+IHKN ++AE+A + ++E +P N G+YVLLSN+Y +A   + V+++R +M  
Sbjct: 434 WGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRE 493

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R+L+K PG++++E + K++ F  GD +HPQ+++IYRML  L     L   +   N +   
Sbjct: 494 RKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELE---SLVKEVHPPNEKCQG 550

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
             EE+ +G    HSEKLAIAF L+ T  GT I +MKNLRVC DCH FIK VS I  R  I
Sbjct: 551 RSEELLIGTGV-HSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFI 609

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA RFHHF  G CSC+DYW
Sbjct: 610 VRDATRFHHFRDGICSCKDYW 630



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 134/319 (42%), Gaps = 66/319 (20%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           + +W+  +   SK   +      +R  +R     +++T PF++++C      +    +H 
Sbjct: 19  TTAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHA 78

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF------ 236
            V+++G   D +  ++L++ YAKC +   AR++FD+MP    + +  MI    F      
Sbjct: 79  HVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLH 137

Query: 237 --------------------------LLDVILGTAV------------------------ 246
                                     LL ++ G +V                        
Sbjct: 138 AVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLA 197

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                + MY KCG ++ AR++FD M  +++I+W+AMI+ Y  +G  +  L+++  M  S 
Sbjct: 198 VANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSG 257

Query: 302 VLPNRITFVSLLYACSHTGLVEEG-LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
           V  + +T + ++ AC++ G    G           F   P +++   +V++  R G L  
Sbjct: 258 VSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCGNLTR 315

Query: 361 ALKLIESMSVEKDEGLWGA 379
           A ++ +  S EK    W A
Sbjct: 316 AREVFDR-SGEKSVVSWTA 333


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 302/527 (57%), Gaps = 53/527 (10%)

Query: 57  SVDPKFFISSLL--SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
            V+P  F   L+  +C  +  +   R+VH ++       ++ V   ++ +YA    + DA
Sbjct: 158 GVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDA 217

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
            A+F+G+  RD+V W+ M+  + +    +      R+    G+     TL   + A  D 
Sbjct: 218 RAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADA 277

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             +  GR +H    + G                                           
Sbjct: 278 AALPRGRELHGFGWRRG------------------------------------------- 294

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
               F L   L T+++DMYAK G +  AR +F+++ ++ ++SW+AMI  YG HG   +AL
Sbjct: 295 ----FGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEAL 350

Query: 292 DLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
            LF  M   ++V P+ ITFV +L AC+H G+VEE    F  M + ++++P V+HYTC++D
Sbjct: 351 ALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVID 410

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           +LG  GR +EA  LI+ MS+E D G+WGALL  C+IHKNV+L E+A + L+E +P++ G+
Sbjct: 411 VLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGN 470

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YV LSN+YA +G+W+  A++R LMT R LKKI   +WIE++ K H F VGD++HP+S+EI
Sbjct: 471 YVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEI 530

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y  L  L   +  AGY+PD     H+VD++ K   + SHSE+LAIAFGLI+TP GT + +
Sbjct: 531 YGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLV 590

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLRVC DCH  IK +S I +R II+RD NR+HHF  G CSC+DYW
Sbjct: 591 TKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 10/149 (6%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D +L T ++D+YA CG +  AR +FD M ++NV  W+ +I AY   G  + A+ L+  M+
Sbjct: 96  DTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMV 155

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEG----LRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
              V P+  T+  +L AC+    +E G     R+  + W       DV     +VD+  +
Sbjct: 156 EHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQ-----DVFVCAGVVDMYAK 210

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGA 383
            G +D+A  + + ++V +D  +W +++ A
Sbjct: 211 CGCVDDARAVFDGIAV-RDAVVWNSMIAA 238


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/505 (39%), Positives = 285/505 (56%), Gaps = 49/505 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDSVSWSVMVGG 132
           ++ ++H  I   G      ++N L+ +Y   +   L  A  +   M E+   +W+V++ G
Sbjct: 230 ELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLING 289

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           ++         ET++      + +D  T   V+ AC     +  G++IH   ++ GLD D
Sbjct: 290 YTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSD 349

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
                                                          VI+  A+ +MY+K
Sbjct: 350 -----------------------------------------------VIVKNALTNMYSK 362

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CGS+++AR IFD M  ++ +SW+ M+ AY  HG+ ++ L L   M    V  N ITFVS+
Sbjct: 363 CGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSV 422

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L +CSH GL+ EG + F S+  D  +    +HY C+VDLLGRAG+L EA K I  M  E 
Sbjct: 423 LSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEP 482

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           +   W +LLGACR+HK++D  ++AA+ LLE  P N    V+LSN+Y+  G W++ AK+R 
Sbjct: 483 EIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRR 542

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
            M  RR+KK+PG + I+V+NK+H+F V D++HP++ EIY  +  L   +  AGY+PDT  
Sbjct: 543 AMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKM 602

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            LHDVDEE K   L  HSEKLAIAFGLI+TPE + + I KNLRVC DCH+  K +S IT 
Sbjct: 603 VLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITG 662

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I+VRD +RFHHF  G+CSC+DYW
Sbjct: 663 REIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 134/291 (46%), Gaps = 58/291 (19%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ +  T   V+ +  D   +  G+ IH  V +S   +D FV  ALV+ Y KC  + DA
Sbjct: 5   GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64

Query: 213 RQLFDQMPTR-----------------------------------DLVTWTVMIGA---- 233
           R++FD MP R                                   D VT+  ++ A    
Sbjct: 65  RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124

Query: 234 ---------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                            F LD+ +GTA+I MYA+C S ++A ++F RM+QKN+I+WSA+I
Sbjct: 125 ENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAII 184

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
            A+  HG   +AL  F MM    +LPNR+TF+SLL   +    +EE  R+   +  +  +
Sbjct: 185 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIH-LLITEHGL 243

Query: 339 RPDVKHYTCMVDLLGR--AGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
                    +V++ GR   G LD A  +++ M  E+    W  L+    +H
Sbjct: 244 DDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLH 293



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 115/250 (46%), Gaps = 18/250 (7%)

Query: 58  VDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD   FIS L +C +   + + + +H+  V  G  +++IV N L  +Y+   ++ +A  +
Sbjct: 313 VDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRI 372

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M  R +VSW+ M+  +++  +     +  R+  + G++L+  T   V+ +C     I
Sbjct: 373 FDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLI 432

Query: 175 VMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIG 232
             G +  H +    G+++       LVD+  +   + +A +   +MP+  ++VTW  ++G
Sbjct: 433 AEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLG 492

Query: 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
           A +   D+  G              +AR++ + +   N  +   +   Y   G  K A  
Sbjct: 493 ACRVHKDLDRGKL------------AARKLLE-LDPGNSSASVVLSNIYSERGDWKNAAK 539

Query: 293 LFPMMLSSRV 302
           L   M S RV
Sbjct: 540 LRRAMASRRV 549


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/505 (39%), Positives = 288/505 (57%), Gaps = 20/505 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVH  +V  G   +  V   L+ +Y       +   +F+     D  S + +V G S+ 
Sbjct: 173 KQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRN 232

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRAC----RDRKDIVMGRLIHDIVLKSGLDID 192
           A        FREFI  G++L+  +   ++  C    RD + + + R +  I    G++ +
Sbjct: 233 AQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSI----GVEPN 288

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
                 ++  +A    +         M  R    +++  G   FL DV +G+A++DMYAK
Sbjct: 289 SVTIPCVLPAFANVAAL---------MHGRSAHCFSLRKG---FLHDVYVGSALVDMYAK 336

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG    AR IFD M  +NV+SW+AMI  Y  HG    A+ LF  M   +  P+ +TF  +
Sbjct: 337 CGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCV 396

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACS  GL EEG R F+ M     + P ++HY CMV LLGR+G+LDEA  LI  M  E 
Sbjct: 397 LGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEP 456

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           D  +WG+LLG+CR++ NV LAE+AA+ L + +P N G+YVLLSN+YA+   W  V ++RD
Sbjct: 457 DSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRD 516

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
            M    LKK  G +WIE++NK+H    GD++HP    I   L  L+ ++   G+ P  +F
Sbjct: 517 EMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDF 576

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            LHDV+E+ K   L  HSEKLA+A GLI+T  GT +R++KNLR+CGDCH  +K +S+  +
Sbjct: 577 VLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQ 636

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I VRD NRFHHF+ G CSC DYW
Sbjct: 637 REISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 158/370 (42%), Gaps = 57/370 (15%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           DP    S+L SC      R +HA  V  G   +  VA+ LL+ Y    A   A ++F+ M
Sbjct: 19  DPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRM 78

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFRE-------------------FIRCGMQLDSY 159
            E++ V WS ++ G+S   D    +    +                     R G  LD+ 
Sbjct: 79  PEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAV 138

Query: 160 T----------------LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           T                +   + A  D K++ +G+ +H  V+K+G  +D  V  AL+DMY
Sbjct: 139 TALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMY 198

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
            KC   D+  ++F +    D+ +   ++       +  +  A++            RE  
Sbjct: 199 GKCGRADEIVRVFHESSHMDVASCNALVAG--LSRNAQVSEALLLF----------REFI 246

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
            R  + NV+SW++++A    +G+  +A+DLF  M S  V PN +T   +L A ++   + 
Sbjct: 247 CRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALM 306

Query: 324 EGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            G          F++R     DV   + +VD+  + G+   A  + ++M   ++   W A
Sbjct: 307 HGRSAHC-----FSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMP-SRNVVSWNA 360

Query: 380 LLGACRIHKN 389
           ++G   +H +
Sbjct: 361 MIGGYAMHGD 370


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/610 (33%), Positives = 326/610 (53%), Gaps = 96/610 (15%)

Query: 62  FFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F ++ +L C     ++   R++H  I+  G   ++++ N +L +YA       A   F  
Sbjct: 127 FVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGA 186

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFRE----------------------------- 148
           M ++D+ SW++++    +  D +   + F E                             
Sbjct: 187 MAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRL 246

Query: 149 --FIRCGMQLDSYT--LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
              +R G+   +YT  + F +      +D  +GR +H  V+ + L+ D FV  +L+DMY 
Sbjct: 247 QQMVRAGVTFSNYTYSMVFALAGLLSSRD--LGRQLHGRVVVAVLEEDAFVGCSLMDMYC 304

Query: 205 KCKVIDDARQLFDQMP--TRD-LVTWTVMIG------------------------ANKFL 237
           KC  ++ A  +FD+    T D    W+ M+                         A +F+
Sbjct: 305 KCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFI 364

Query: 238 L------------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMR 267
           L                              D  L +A++DMY+K GS++ A  IF   +
Sbjct: 365 LTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQ 424

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
            KNV  W+ M+ +Y  HGQG+ AL++F  M + +++PN IT V++L ACSH+GLV +G  
Sbjct: 425 TKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYH 484

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            F+ M +++ + P+ +HY CMVDL GRAG LD+A   IE   +  +  +W  LL ACR+H
Sbjct: 485 YFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLH 544

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
           K+++ A++A++ L++ +  + G YVL+SN+YA   +W D  K+R  M  RR++K PG +W
Sbjct: 545 KHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSW 604

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           I ++N +H+F   D++HP+S EIY  L  L E+L+  GY   T+  +HD++EE +  +L 
Sbjct: 605 IHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLK 664

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLAIAFG+I+TP GT +RI KNLRVC DCH  IK ++  T R I+VRD  RFHHF+
Sbjct: 665 FHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFK 724

Query: 568 GGACSCRDYW 577
            G CSC D+W
Sbjct: 725 DGQCSCEDFW 734



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 164/357 (45%), Gaps = 44/357 (12%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H Q V G   ++ ++A          + L +AH +F+G   R   +W+ ++ G ++ 
Sbjct: 53  KAIHRQSVRGCVPSSSVIA----------RGLHNAHRVFDGTPTRSLPAWTSIISGCARE 102

Query: 137 ADFINCFETFREFI-RCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               +    F E +  CG    +++ L  V+R C    D+  GR IH  +L+SG+  D  
Sbjct: 103 GRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVV 162

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           +C A++DMYAKC     AR+ F  M  +D  +W ++I A   L D              G
Sbjct: 163 LCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRA--CLQD--------------G 206

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +  A ++FD    ++V SW+ +++    HG   +AL     M+ + V  +  T+ S+++
Sbjct: 207 DLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTY-SMVF 265

Query: 315 ACSHTGLVEE---GLRLFSSMWDDFAVRPDVKHYTC-MVDLLGRAGRLDEALKLIESMS- 369
           A +  GL+     G +L   +    AV  +     C ++D+  + G ++ AL + +  S 
Sbjct: 266 ALA--GLLSSRDLGRQLHGRVV--VAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSD 321

Query: 370 -VEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS--NVYANAG 422
             E  +  W  ++ G  +  +  +  E   + L E  P   G ++L S  +  ANAG
Sbjct: 322 FTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVP--AGQFILTSVASACANAG 376


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 312/592 (52%), Gaps = 89/592 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           + I  + Q+HA +   G   + I+  KL   YA    L  + ALF   +      W+ ++
Sbjct: 41  KTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAII 100

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            G +           + + +  G++ +++T   +++ C     I  G+ +H   +K G D
Sbjct: 101 HGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFD 156

Query: 191 IDQFVCAALVDMYAK---------------------------CKV----IDDARQLFDQM 219
            D +V   L+D+YA+                           C      +D AR LFD M
Sbjct: 157 SDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGM 216

Query: 220 PTRDLVTWTVM-----------------------------------------IGA----- 233
             RD V W VM                                         +GA     
Sbjct: 217 EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 276

Query: 234 --------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                   N    +V +GTA++DMY+KCGS++ AR +FD++  K+V++W++MI  Y  HG
Sbjct: 277 WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG 336

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
             ++AL LF  M    + P  ITF+ +L AC H+G V EG  +F+ M D++ + P ++HY
Sbjct: 337 FSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHY 396

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            CMV+LLGRAG +++A +L+++M++E D  LWG LLGACR+H  + L E   + L+++  
Sbjct: 397 GCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL 456

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N G Y+LLSN+YA  G W  VA++R +M    +KK PG + IEV NK+H+F  G   HP
Sbjct: 457 ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHP 516

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
           + +EIY ML  ++  L+  GY P T+  LHD+ E  K  +L  HSEKLAIAFGLI T  G
Sbjct: 517 KRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPG 576

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T I+I+KNLRVC DCH   K +S IT R I+VRD NRFHHF  G+CSC DYW
Sbjct: 577 TTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 307/589 (52%), Gaps = 88/589 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HAQI+  G   +  + N LL  Y     + DA  LF+ +  RD V+W+ ++   +  
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLS 82

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK--DIVMGRLIHDIVLKSGLDIDQF 194
                     R  +  G   D +    +++AC +     +  G+ +H     S    D  
Sbjct: 83  NRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDV 142

Query: 195 VCAALVDMYAKCKVIDDARQLFD-------------------------------QMPTRD 223
           V ++L+DMYAK  + D  R +FD                               Q P R+
Sbjct: 143 VKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRN 202

Query: 224 LVTWTVMI--------GANKFLLDV----------------------------------- 240
           L  WT +I        G + F L V                                   
Sbjct: 203 LFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMH 262

Query: 241 ------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                        +  A+IDMYAKC  + +A+ IF  M +K+V+SW+++I     HGQ +
Sbjct: 263 GVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAE 322

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL L+  M+ + V PN +TFV L++ACSH GLV +G  LF +M +D  + P ++HYTC+
Sbjct: 323 EALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCL 382

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           +DL  R+G LDEA  LI +M V  DE  W ALL +C+ H N  +A   A  LL  +P++P
Sbjct: 383 LDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDP 442

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
             Y+LLSN+YA AG W+DV+K+R LM     KK PG++ I++    H F  G+++HP  +
Sbjct: 443 SSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRD 502

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           EI  ++  L E++   GY PDT+  LHD+D++ K   L+ HSE+LA+A+GL+    GT I
Sbjct: 503 EIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVI 562

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RI+KNLRVCGDCH+ +K +SAIT R I VRDA R+HHF+ G CSC D+W
Sbjct: 563 RIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 58  VDPKFFISSLLSCRNI--FQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            DP    S + +C N+  +++ +Q+H  ++  G  + L ++N L+ +YA    L  A  +
Sbjct: 237 TDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYI 296

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M  +D VSW+ ++ G ++          + E +  G++ +  T   +I AC     +
Sbjct: 297 FCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLV 356

Query: 175 VMGR-LIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVM 230
             GR L   +V   G+   +  + C  L+D++++   +D+A  L   MP   D  TW  +
Sbjct: 357 SKGRTLFRTMVEDHGISPSLQHYTC--LLDLFSRSGHLDEAENLIRTMPVNPDEPTWAAL 414

Query: 231 IGANK 235
           + + K
Sbjct: 415 LSSCK 419



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 81/362 (22%)

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
           R+  ++ + +H  ++K+GL+  + +   L++ Y KC +I DA QLFD +P RD V W  +
Sbjct: 16  RQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASL 75

Query: 231 IGA-------------------NKFLLDVILGTAVID-------MYAKCGSIDSAREIFD 264
           + A                     F  D  +  +++        ++ K G    AR    
Sbjct: 76  LTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLS 135

Query: 265 RMRQKNVISWSA--MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
                +V+  S   M A +G    G+   D    +       N I++ +++   + +G  
Sbjct: 136 PFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSL-------NSISWTTMISGYARSGRK 188

Query: 323 EEGLRLF--SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE----KDEGL 376
            E  RLF  +   + FA       +T ++  L ++G   +A  L   M  E     D  +
Sbjct: 189 FEAFRLFRQTPYRNLFA-------WTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLV 241

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL---SNVYANAGRWQDVAKIRDL 433
             +++GAC           A  +L E   Q  G  + L   S ++ +       AK  DL
Sbjct: 242 LSSVVGAC-----------ANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDL 290

Query: 434 MTRRRL------KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           +  + +      K +  WT I          VG + H Q+EE     + L +++ LAG  
Sbjct: 291 VAAKYIFCEMCRKDVVSWTSI---------IVGTAQHGQAEEA----LALYDEMVLAGVK 337

Query: 488 PD 489
           P+
Sbjct: 338 PN 339


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/557 (35%), Positives = 312/557 (56%), Gaps = 56/557 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   + GG + ++ V      +Y       DA  +F+ M +R+  +W+  +    + 
Sbjct: 128 KQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQD 187

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              ++    F+EF+    + +S T    + AC D   + +GR +H  +++ G   D  V 
Sbjct: 188 RRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVA 247

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA---------------------- 233
             L+D Y KC  I  A  +F+++  R ++V+W  M+ A                      
Sbjct: 248 NGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVE 307

Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
              F++  +L                              G+A++DMY KCGSI++A ++
Sbjct: 308 PTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQV 367

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTG 320
           F  + ++N+++W+AMI  Y + G    AL LF  M   S  + P+ +T +S+L  CS  G
Sbjct: 368 FSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVG 427

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE G+++F SM  ++ + P  +H+ C+VDLLGR+G +D A + I++M+++    +WGAL
Sbjct: 428 AVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGAL 487

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           LGACR+H   +L ++AA+ L E    + G++V+LSN+ A+AGRW++   +R  M    +K
Sbjct: 488 LGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIK 547

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++WI V+N+IH F   DS+H ++ EI  ML  L   ++ AGY+PDTN  L D+++E
Sbjct: 548 KNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDE 607

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   ++ HSEK+A+AFGLIA P+G  IRI KNLR+CGDCHS IK +S I  R IIVRD 
Sbjct: 608 EKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDN 667

Query: 561 NRFHHFEGGACSCRDYW 577
           +RFH F+ G CSC+DYW
Sbjct: 668 HRFHRFKDGCCSCKDYW 684



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 159/373 (42%), Gaps = 59/373 (15%)

Query: 77  RQVHAQIVAGG-TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R +HA I+    T     ++N L+ +Y+    L  A  + +    R  V+W+ ++ G   
Sbjct: 26  RTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVH 85

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
              F+     F    R  +Q + +T P V +A    +  + G+ IH + LK G+  D FV
Sbjct: 86  NRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---ANKFLLDVIL---------- 242
             +  DMY K     DA  +FD+MP R+L TW   I     ++  LD I+          
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG 205

Query: 243 -----------------------------------------GTAVIDMYAKCGSIDSARE 261
                                                       +ID Y KCG I SA  
Sbjct: 206 EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEM 265

Query: 262 IFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           +F+R+  +KNV+SW +M+AA   + + ++A  +F +     V P      S+L AC+  G
Sbjct: 266 VFNRIGNRKNVVSWCSMLAALVQNHEEERACMVF-LQARKEVEPTDFMISSVLSACAELG 324

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +E G R   ++     V  ++   + +VD+ G+ G ++ A ++   +  E++   W A+
Sbjct: 325 GLELG-RSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELP-ERNLVTWNAM 382

Query: 381 LGACRIHKNVDLA 393
           +G      ++D+A
Sbjct: 383 IGGYAHQGDIDMA 395


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 319/595 (53%), Gaps = 88/595 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +N F  +++HAQI+  G   +      L+  Y     L DA  LF+ + ++D V+W+ ++
Sbjct: 22  KNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVL 81

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI--VMGRLIHDIVLKSG 188
              +        F      +  G+Q D +    +I+AC +   +   +G+ +H   L S 
Sbjct: 82  SACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSP 141

Query: 189 LDIDQFVCAALVDMYAKCKVID-------------------------------DARQLFD 217
              D  V ++LVDMYAK ++ D                               +A +LF 
Sbjct: 142 FFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFR 201

Query: 218 QMPTRDLVTWTVMIG-------------------------ANKFLLDVILG--------- 243
           + P ++L  WT +I                          A+  +L  ++G         
Sbjct: 202 ESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRE 261

Query: 244 ---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                                 A++DMYAKC  + +A+ IF  MR+K+V+SW+++I    
Sbjct: 262 LGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTA 321

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            HG  ++AL L+  M+ + V PN +TFV L+YACSH GLV +G  LF SM +DF +RP +
Sbjct: 322 QHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSL 381

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HYTC++DL  R+G LDEA  LI +M V+ DE  W ALL AC+ H N  +A   A  LL+
Sbjct: 382 QHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLD 441

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
            +P++P  Y+LLSN+YA AG W++V+ +R LM  + +KK+PG++ +++  +   F  G++
Sbjct: 442 LKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEA 501

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
           + P  +EI  ++  L  ++   GY+PDT+  L D+D++ K   L+ HSE+LA+A+GL+  
Sbjct: 502 SQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKA 561

Query: 523 PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             GT IRI+KNLRVCGDCH+ +K +SAIT R I VRD  R+HHF+ G CSC D+W
Sbjct: 562 VPGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 60/218 (27%)

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
           RK+  + + +H  ++KSGL+        L+D Y KC ++ DA +LFD +P +D V W  +
Sbjct: 21  RKNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATV 80

Query: 231 IGA---------------------------------------------------NKFLL- 238
           + A                                                    +FLL 
Sbjct: 81  LSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLS 140

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               D ++ ++++DMYAK    D  R +FD + + + ISW+AMI+ Y   G+  +AL+LF
Sbjct: 141 PFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELF 200

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
                     N   + +L+     +G   + L LF  M
Sbjct: 201 ----RESPFKNLYAWTALISGLVQSGNANDALYLFVEM 234



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 89/184 (48%), Gaps = 9/184 (4%)

Query: 59  DPKFFISSLLSCRN--IFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           DP    S + +C N  + ++ +QVH  ++  G  + L ++N L+ +YA    +  A  +F
Sbjct: 243 DPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIF 302

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M+ +D VSW+ ++ G ++          + + +  G++ +  T   +I AC     + 
Sbjct: 303 CEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVS 362

Query: 176 MGR-LIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI 231
            GR L   +V   G+   +  + C  L+D++++   +D+A  L   MP + D  TW  ++
Sbjct: 363 KGRALFKSMVEDFGIRPSLQHYTC--LLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALL 420

Query: 232 GANK 235
            A K
Sbjct: 421 SACK 424


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/624 (34%), Positives = 330/624 (52%), Gaps = 63/624 (10%)

Query: 17  LRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPK-----FFISSLLSCR 71
           LR+ S+S+     L     +Q     R+ ++        RSV P      +++    S  
Sbjct: 12  LRWVSTSSARFFPLTEKEEQQIDRLERLDLRDAVQLLEDRSVSPSAEVLAWYLRRCGSEA 71

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
            I + +++H  IV  G  ++  + N L+ +Y    +L  A ++F+    R+  SW++MV 
Sbjct: 72  AIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVA 131

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            F+    +++           G+  +S T   ++ A      +  GR +H  +   G   
Sbjct: 132 AFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLA 191

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLD--------- 239
           D FV   L++MYAKC+ + DA  +F+ + +R ++ WT ++ A   N F  D         
Sbjct: 192 DIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMT 251

Query: 240 -----------------------------------------VILGTAVIDMYAKCGSIDS 258
                                                    V +G A+I+MY KC S D 
Sbjct: 252 LDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARSEANVCVGNALINMYGKCASPDE 311

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-----VLPNRITFVSLL 313
           AR++FD M++K++I+W++MIA YG +G G +AL+++  M  SR     +  + ITF+ +L
Sbjct: 312 ARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVL 371

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
           +ACSH GLV++  +L+SSM  D+  +P      C++DLLGRAG LDEA + I SM    D
Sbjct: 372 FACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPD 431

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +W  LLGAC  H +V+ A  AA  ++  +P + G YV LSN+YA A RW D+A++R L
Sbjct: 432 HTIWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKL 491

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M +R + K+ G + IE+   +H+F  GD++HP+  EIY  L  +   +   GY+PD    
Sbjct: 492 MDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAV 551

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LH+   E K      HSE+LAIAFG+I++P GT +RIMKNLRVC DCHS  K +S  + R
Sbjct: 552 LHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGR 611

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            IIVRDANRFH F  G+CSC DYW
Sbjct: 612 KIIVRDANRFHEFRNGSCSCEDYW 635


>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 323/587 (55%), Gaps = 73/587 (12%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFN 116
           + +  +S L  C ++ ++ ++HA I+  G   N  ++ KLL   A+    +L  A  +F+
Sbjct: 4   NARAILSLLQGCNSMRKLHKIHAHILINGYQHNPSISEKLLNFCAVSVSGSLAYAQLVFH 63

Query: 117 GMKERDSVSWSVMVGGFSKVAD--FINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKD 173
            +    + +W+ M+ GFS+      +     +   +     + D+YT  F+++AC + K+
Sbjct: 64  RIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKE 123

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF----------------- 216
               R +H  +++ G D D  +C  L+  YA   +I+ A ++F                 
Sbjct: 124 EGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISC 183

Query: 217 --------------DQMPTRD----------LVTWTVMIGA-------------NKFLLD 239
                         DQM   +          L++    +GA              + + +
Sbjct: 184 YCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVEN 243

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           + +G A+IDMYAKCGS+ SA  IF+ M +++V +W++MI  YG HG+G +A+  F  ML 
Sbjct: 244 IFVGNALIDMYAKCGSLASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLM 303

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           + V PN ITF+ LL  CSH GLV+EG++ F  M  +F ++P +KHY CMVDL GRAG+L 
Sbjct: 304 AGVRPNSITFLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLK 363

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EAL++I S   + D  LW  LLG+C+IH+NV++ EMA ++L++      G  VLLS +YA
Sbjct: 364 EALEVIRSSPSQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLGAGDCVLLSGIYA 423

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
            A   Q VA++R L+  R +K  PGW+WIEV +++H+F V D +HP S EIYR L  +  
Sbjct: 424 EAKDLQGVARMRKLIQSRGIKTTPGWSWIEVGDQVHRFVVDDKSHPDSREIYRKLEEVIH 483

Query: 480 KLELAGY---------IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  L GY          P++N + +  +          HSEKLAIA+GL  TPEGT + I
Sbjct: 484 RASLVGYAMEESSLVAAPESNTQEYCWETSTSY-----HSEKLAIAYGLARTPEGTSLLI 538

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCH+F K VS    R IIVRD  RFHHF+GG CSC+++W
Sbjct: 539 VKNLRVCRDCHNFTKFVSMAFDREIIVRDRVRFHHFKGGHCSCKEFW 585


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/501 (39%), Positives = 294/501 (58%), Gaps = 14/501 (2%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H  +V  G   +  VA  L+ +Y       +   +F+     D  S + +V G S+ A
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                   FREF+  G++L+  +   ++  C ++ +D+    L  ++    G++ +    
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREM-QSEGIEPNSVTI 295

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
             ++  +A    +         M  R    +++  G   F  D+ +G+A++DMYAKCG +
Sbjct: 296 PCVLPAFANIAAL---------MHGRSAHCFSLRKG---FHHDIYVGSALVDMYAKCGRV 343

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             AR IF+ M  +NV+SW+AMI  Y  HG+ + A+ LF  M SS+  P+ +TF  +L AC
Sbjct: 344 RDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGAC 403

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           S  G  EEG   F+ M     + P ++HY CMV LLGRAG+LD+A  +I  M  E D  +
Sbjct: 404 SQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCI 463

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WG+LLG+CR+H NV LAE+AA++L + +P+N G+YVLLSN+YA+   W  V ++RD+M  
Sbjct: 464 WGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKT 523

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             LKK  G +WIE++NK+H    GDS+HP    I   L  L+ ++   G+ P T++ LHD
Sbjct: 524 VGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHD 583

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+E+ K   L  HSEKLA+A GLI+T  GT ++++KNLR+CGDCH  +K +S+  RR I 
Sbjct: 584 VEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIY 643

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF+ G CSC DYW
Sbjct: 644 VRDTNRFHHFKDGKCSCADYW 664



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 57/374 (15%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
           DP+   S+L SC  +   R +HA     G   +  VA+ LL+ Y    A  DA ++ +GM
Sbjct: 22  DPRLLPSALKSCSALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSVLDGM 81

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL---------------------- 156
             R  V WS ++   +   D    +         G++                       
Sbjct: 82  PHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAV 141

Query: 157 -------------DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
                        D+  +   + A  D  D+ +G  +H  V+K+G  +D  V  AL+DMY
Sbjct: 142 LALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMY 201

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
            KC   D+  ++FD+    D+ +   ++        V   +  + ++         RE  
Sbjct: 202 GKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQV---SEALRLF---------REFV 249

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
            R  + NV+SW++++A    +G+  +A+DLF  M S  + PN +T   +L A ++   + 
Sbjct: 250 GRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALM 309

Query: 324 EGLRLFSSMWDDFAVRPDVKH----YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            G          F++R    H     + +VD+  + GR+ +A  + E+M   ++   W A
Sbjct: 310 HGRSAHC-----FSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPY-RNVVSWNA 363

Query: 380 LLGACRIHKNVDLA 393
           ++G   +H   + A
Sbjct: 364 MIGGYAMHGEAENA 377



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R  H   +  G   ++ V + L+ +YA    + DA  +F  M  R+ VSW+ M+GG++  
Sbjct: 312 RSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMH 371

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR-LIHDIVLKSGLD--IDQ 193
            +  N    FR       + D  T   V+ AC        GR   +++  K G+   ++ 
Sbjct: 372 GEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEH 431

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVIL 242
           + C  +V +  +   +DDA  + +QMP   D   W  ++G+ +   +V+L
Sbjct: 432 YAC--MVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVL 479


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 328/603 (54%), Gaps = 87/603 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F + S    +   + +Q+H  ++  G   +L V   L+ +Y  +  L DAH +F+    R
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198

Query: 122 DSVS-------------------------------WSVMVGGFSKVADFINCFETFREFI 150
           D VS                               W+ M+ G+++  ++    E F++ +
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+ AC     I +GR +H  +   G   +  +  AL+D+Y+KC  ++
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318

Query: 211 -------------------------------DARQLFDQM----PTRDLVTWTVMIGANK 235
                                          +A  LF +M     T + VT   ++ A  
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378

Query: 236 FLLDVILG---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            L  + +G                     T++IDMYAKCG I++A ++F+ +  K++ SW
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   + DLF  M    + P+ ITFV LL ACSH+G+++ G  +F +M  
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG +G   EA ++I  M +E D  +W +LL AC++H NV+L E
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+NPG YVLLSN+YA+AGRW +VAK R L+  + +KK+PG + IE+++ +
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F +GD  HP++ EIY ML  +   LE AG++PDT+  L +++EE K G L  HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+T  GT + I+KNLRVC +CH   K +S I +R II RD  RFHHF  G CSC 
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738

Query: 575 DYW 577
           DYW
Sbjct: 739 DYW 741



 Score =  172 bits (435), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 201/402 (50%), Gaps = 38/402 (9%)

Query: 44  VPMQMGPDCQFTRSVDPKF-------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN 96
           VP    P      S DP +        +S L +C+ +  +R +HAQ++  G        +
Sbjct: 10  VPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALS 69

Query: 97  KLLYIYALH---KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           KL+    L    + L  A ++F  ++E + + W+ M  G +  +D ++  + +   I  G
Sbjct: 70  KLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLG 129

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           +  +SYT PFV+++C   K    G+ IH  VLK G D+D +V  +L+ MY +   ++DA 
Sbjct: 130 LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAH 189

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
           ++FD+ P RD+V++                TA+I  YA  G I++A+++FD +  K+V+S
Sbjct: 190 KVFDKSPHRDVVSY----------------TALIKGYASRGYIENAQKLFDEIPVKDVVS 233

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI+ Y   G  K+AL+LF  M+ + V P+  T V+++ AC+ +G +E G ++   +W
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV--HLW 291

Query: 334 -DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
            DD     ++K    ++DL  + G L+ A  L E +   KD   W  L+G    H N+  
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY-KDVISWNTLIGG-YTHMNLYK 349

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANA-------GRWQDV 427
             +     + R  + P    +LS + A A       GRW  V
Sbjct: 350 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/573 (36%), Positives = 314/573 (54%), Gaps = 59/573 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA---HALFNGMKE 120
           IS++ S  +  ++ Q+HA I+    +    V+ + L   AL   L DA      F  +  
Sbjct: 7   ISAIKSVSHKTRLLQIHAHIIRTTLIQYPTVSLQFLSRIALSGPLQDASYSQRFFGQLSH 66

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
                ++ M+   S           +R+  R G+  D  +  F +++C     +  G  +
Sbjct: 67  PLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPGGVQV 126

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----NKF 236
           H  + K G   D  +  A++D+Y+ C+   DA ++FD+MP RD V W VMI      N+ 
Sbjct: 127 HCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIRNNRT 186

Query: 237 -----LLDVILGTA---------------------------------------------- 245
                L DV+ G++                                              
Sbjct: 187 RDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDALNLCN 246

Query: 246 -VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            +I MY++CG +D A E+F  M  KNV+SWSAMI+    +G G++A++ F  ML   VLP
Sbjct: 247 SLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLP 306

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           +  TF  +L ACS++G+V+EG+  F  M  +F V P+V HY CMVDLLGRAG LD+A +L
Sbjct: 307 DDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQL 366

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I SM V+ D  +W  LLGACRIH +V L E     L+E + Q  G YVLL N+Y++AG W
Sbjct: 367 IMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLIELKAQEAGDYVLLLNIYSSAGHW 426

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           + VA++R LM  + ++  PG + IE++  +H+F V D +H ++ EIY  L  ++ +L +A
Sbjct: 427 EKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEFVVDDVSHSRNREIYETLDEINHQLRIA 486

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+ + + ELH +D++ K   L  HSEKLA+AFG++ATP GT +R+  NLRVC DCH+F+
Sbjct: 487 GYVVELSSELHKMDDKEKGYVLSHHSEKLAVAFGVLATPPGTILRVASNLRVCVDCHNFL 546

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K  S +  R +++RD NRFHHF GG CSC DYW
Sbjct: 547 KLFSGVYNRDVVLRDHNRFHHFRGGRCSCSDYW 579


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/585 (36%), Positives = 322/585 (55%), Gaps = 73/585 (12%)

Query: 1    MSKLKKHGFL--VSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSV 58
            +S+L  HG L    ++  LR  + S    +ALE H         R+ +   PD   T + 
Sbjct: 761  LSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALELHRR-------RLAL---PD---THTY 807

Query: 59   DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
             P      + +C  +  +R+   +HA+    G +T + V N L+++Y        AH +F
Sbjct: 808  PPL-----IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVF 862

Query: 116  NGM--KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
            + M  + R+ VSW+ M+  F+           F E +      D +T+  V+ AC +   
Sbjct: 863  DEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGA 922

Query: 174  IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
            + +GR +H  V K GL  +  V  AL                                  
Sbjct: 923  LALGRRVHVYVEKVGLVENSHVSNAL---------------------------------- 948

Query: 234  NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALD 292
                         ID+YAKCGS++ AR IF+ M   + V+SW+++I     +G GK+AL+
Sbjct: 949  -------------IDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 995

Query: 293  LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
            LF +M   +++P  IT V +LYACSH GLV++G R F  M +D+ + P ++H  CMVDLL
Sbjct: 996  LFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLL 1055

Query: 353  GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
            GRAGR++EA   I +M +E +  +W  LLG+C +HK ++L ++A + L+E  P + G YV
Sbjct: 1056 GRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYV 1115

Query: 413  LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
            LLSN+YA  G W DV  +R  M + R++K PG + +E+ N +++F +GD +HP+SE+IY 
Sbjct: 1116 LLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYE 1175

Query: 473  MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            ML  ++E+L   GYIP T+  L D++EE K   L  HSE+LAIAF L+ +  G  IRI+K
Sbjct: 1176 MLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIK 1235

Query: 533  NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            NLR+CGDCH     +S +  R IIVRD +RFHHF+GGACSC+DYW
Sbjct: 1236 NLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/529 (39%), Positives = 308/529 (58%), Gaps = 36/529 (6%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH Q+V  G  ++L V   L+ +YA    + DAH +F+ M  RD V W+ M+  + +   
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD----IVMGRLIHD-IVLKSGLDIDQ 193
            +     FR+    G   D  T   V  A     D    I   RL+ D +  ++G+  + 
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWN- 272

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDL----VTWTVMIGANKFL------------ 237
               +++  Y +     DA  LF+QM   +     VT  +M+ A  +L            
Sbjct: 273 ----SMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNF 328

Query: 238 -------LDVILGTAVIDMYAKCGSIDSAREIFD--RMRQKNVISWSAMIAAYGYHGQGK 288
                  +D  L  A++DMY KCG +D+A E+F+   + +++V SW+ +I+ YG HG GK
Sbjct: 329 VISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGK 388

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +AL+LF  M    V PN ITF S+L ACSH GL++EG + F+ M    +VRP++KHY CM
Sbjct: 389 EALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADM-TKLSVRPEMKHYACM 447

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VD+LGRAG L+EA +LI+ +     + +WGALL ACRIH N +L E+AA +L + +P++ 
Sbjct: 448 VDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHT 507

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
           G+YVL+SN+YA + +W++V  +R  M  R LKK   ++ IE   ++H F   D + P   
Sbjct: 508 GYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYR 567

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           E+YR + +L+ ++++ GY+PD +  LHDV+ E K   L  HSEKLA+AFG++   +G  I
Sbjct: 568 EVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPI 627

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++ KNLRVC DCH   K +S+I  R IIVRD NRFHHF+GG CSC DYW
Sbjct: 628 QVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 172/360 (47%), Gaps = 36/360 (10%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGM- 118
           F+   L  C ++  ++ +H+ +   G L  T   +A +L+ +Y+    L  A  LF+   
Sbjct: 27  FYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLA-RLIILYSKLGDLHSARTLFDHRH 85

Query: 119 -------KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171
                  +  +S   + M+  ++         + +    R G+ ++++T PFV++ C   
Sbjct: 86  HHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASE 145

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
              V G ++H  V+++G   D FV AALVDMYAKC  I DA ++FD+M  RD+V WT MI
Sbjct: 146 LGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMI 205

Query: 232 G-------------------ANKFLLDVILGTAVIDMYAKCG----SIDSAREIFDRMRQ 268
                                  FL D I   +V     + G    +I  AR +FDRM +
Sbjct: 206 TLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEE 265

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +N ISW++M++ Y  +G+   AL LF  M +S   PN +T + ++ ACS+ G    G +L
Sbjct: 266 RNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKL 325

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-EKDEGLWGALLGACRIH 387
            + +     +  D      ++D+  + G LD A+++  +  + E+D   W  L+    +H
Sbjct: 326 HNFVISS-KMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVH 384


>gi|115473599|ref|NP_001060398.1| Os07g0636900 [Oryza sativa Japonica Group]
 gi|113611934|dbj|BAF22312.1| Os07g0636900, partial [Oryza sativa Japonica Group]
          Length = 352

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/347 (52%), Positives = 242/347 (69%)

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
           + +N+  LD+ LGTA+IDMYAKCG I+SA+ +FDRM +K+V +WS+MI     HG G ++
Sbjct: 6   VESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHES 65

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M+S  + PN +TFV +L AC+H GLV EG + F SM +   + P V+HY CMVD
Sbjct: 66  LSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVD 125

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGR+G ++EA +LI SM+ E D  +W ALLGACRIHKNV++AE A   L    P   GH
Sbjct: 126 LLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGH 185

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLLSN+YA A  W+ VA++R  + R  +++IPG + IE + KIH+F  GD  HP+S+EI
Sbjct: 186 YVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEI 245

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           YR+L  + ++L+ AGY P T   L D+DE+ K  +L  HSEKLAIAF L+ TP  + IRI
Sbjct: 246 YRVLEEMMDRLKQAGYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRI 305

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLR C DCHS +K +S +  R +IVRD NRFHHF  G CSC+DYW
Sbjct: 306 TKNLRACEDCHSAMKLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 352



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 91/216 (42%), Gaps = 24/216 (11%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           +VH  + +     +L +   L+ +YA    +  A  +F+ M E+D  +WS M+ G +   
Sbjct: 1   EVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHG 60

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQF 194
                   F + I  GM+ +  T   V+ AC     +  G +    +    G++  ++ +
Sbjct: 61  LGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHY 120

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI------ 247
            C  +VD+  +   +++ARQL   M    D + W  ++GA +   +V +    +      
Sbjct: 121 GC--MVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVL 178

Query: 248 ------------DMYAKCGSIDSAREIFDRMRQKNV 271
                       ++YA+  S +   E+   +R+ N+
Sbjct: 179 DPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNI 214


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/541 (37%), Positives = 296/541 (54%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            +++ N L+      K + DA  LF  M +RDS++W+ MV G ++    +   + FR   
Sbjct: 211 TVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMR 270

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D YT   ++ AC        G+ IH  + ++  + + FV +ALVDMY+KC+ I 
Sbjct: 271 AEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIR 330

Query: 211 DARQLFDQMPTRDLVTWTVMI--------------------------------------- 231
            A  +F +M  R++++WT MI                                       
Sbjct: 331 LAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCA 390

Query: 232 -------GANKFLLDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                  GA    L ++ G         A++ +Y KCGSI+ A  +FD M   + +SW+A
Sbjct: 391 NLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 450

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++  Y   G+ K+ +DLF  ML + + P+ +TF+ +L ACS  GLVE+G   F SM  D 
Sbjct: 451 LVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDH 510

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  R+GR  EA + I+ M    D   W  LL +CR+  N+++ + A
Sbjct: 511 DIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWA 570

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A++LLE  PQNP  YVLL +++A  G+W +VA +R  M  R++KK PG +WI+ +NK+H 
Sbjct: 571 AENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHI 630

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D +HP S  IY  L  L+ K+   GY PD +  LHDV +  KV  +  HSEKLAIA
Sbjct: 631 FSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIA 690

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI  P+   IRI+KNLRVC DCH+  K +S IT R I+VRDA RFH F  G CSC D+
Sbjct: 691 FGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDF 750

Query: 577 W 577
           W
Sbjct: 751 W 751



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 17/239 (7%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL   A  + + D   LF  M ERD+VS++ ++ GFS         + +R  +
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALL 137

Query: 151 RC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           R   ++    TL  +I       D  +G  +H  VL+ G     FV + LVDMYAK  +I
Sbjct: 138 REESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI 197

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
            DAR++F +M  + +V +  +I            T ++    +C  I+ A+ +F  M  +
Sbjct: 198 RDARRVFQEMEAKTVVMYNTLI------------TGLL----RCKMIEDAKGLFQLMVDR 241

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           + I+W+ M+     +G   +ALD+F  M +  V  ++ TF S+L AC      EEG ++
Sbjct: 242 DSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQI 300



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 18/149 (12%)

Query: 171 RKDIVMGRLIHDIVLKSGLDID-QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
           R  + +   +H ++LK+ L     F+   L+  YAK   +  AR++FD+MP  +L T   
Sbjct: 25  RTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNA 84

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
           ++ A      +     V DM            +F  M +++ +S++A+I  +   G   +
Sbjct: 85  LLSA------LAHSRLVPDM----------ERLFASMPERDAVSYNALITGFSSTGSPAR 128

Query: 290 ALDLFPMML-SSRVLPNRITFVSLLYACS 317
           ++ L+  +L    V P RIT  +++   S
Sbjct: 129 SVQLYRALLREESVRPTRITLSAMIMVAS 157


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 327/605 (54%), Gaps = 97/605 (16%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWS 127
           C+    ++Q+HA  +  G + + + A +LL    L   + +  A   F+ +   +  SW+
Sbjct: 25  CKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWN 84

Query: 128 VMVGGFSKVAD----FINCFET---FREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRL 179
            ++   +   D     +N  E    F   +  G+ + + +T P V++AC     I  G+ 
Sbjct: 85  TIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQ 144

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA--------------------------- 212
           +H  V+K GL  D+FV + LV +Y  C  + DA                           
Sbjct: 145 LHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMG 204

Query: 213 -----RQLFDQMPTRDLVTWTVM------------------------------------- 230
                R+LFD MP + +V+W VM                                     
Sbjct: 205 DLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLP 264

Query: 231 ----IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-QKNVI 272
               +GA             N+  +D +LG+A+IDMY+KCGSID A ++F+ +R +KN I
Sbjct: 265 AVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPI 324

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           +WSA+I     HG+ + ALD F  M  + V P+ + ++ +L ACSH GLVEEG  ++  M
Sbjct: 325 TWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHM 384

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
            +   + P ++HY CMVDLLGRAG L+EA +LI +M V+ D+ +  ALLGAC++H N+++
Sbjct: 385 VNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEM 444

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
            E  AK L+   P + G YV LSN++A+ G W+ V K+R  M    ++K PG +WIE++ 
Sbjct: 445 GERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDG 504

Query: 453 KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
            IH+F V D +HP++E I+ ML  +S++L   GY P+T   L ++DE+ K   L+ HSEK
Sbjct: 505 VIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEK 564

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           +AIAFGLI+T   T ++I+KNLRVC DCHS IK VS I  R IIVRD  RFHHFE G+CS
Sbjct: 565 IAIAFGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCS 624

Query: 573 CRDYW 577
           C DYW
Sbjct: 625 CMDYW 629


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 300/537 (55%), Gaps = 55/537 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N LL +Y+    L  A A+F  M +R  VS++ M+ G+++        + F E    G+ 
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D YT+  V+  C   + +  G+ +H+ + ++ L  D FV  AL+DMYAKC  + +A  +
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454

Query: 216 FDQMPTRDLVTWTVMIGA--------------------NKFLLDVILGTAVIDMYAKCGS 255
           F +M  +D+++W  +IG                      +F  D      V+   A   +
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514

Query: 256 IDSAREI-----------------------------------FDRMRQKNVISWSAMIAA 280
            D  REI                                   FD +  K+++SW+ MIA 
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 574

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           YG HG GK+A+ LF  M  + +  + I+FVSLLYACSH+GLV+EG R F+ M  +  + P
Sbjct: 575 YGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 634

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            V+HY C+VD+L R G L +A + IE+M +  D  +WGALL  CRIH +V LAE  A+ +
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 694

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
            E +P+N G+YVL++N+YA A +W+ V ++R  + +R L+K PG +WIE++ +++ F  G
Sbjct: 695 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAG 754

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           DS++P++E I   L  +  ++   GY P T + L D +E  K   L  HSEKLA+A G+I
Sbjct: 755 DSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGII 814

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++  G  IR+ KNLRVCGDCH   K +S +TRR I++RD+NRFH F+ G CSCR +W
Sbjct: 815 SSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 177/383 (46%), Gaps = 59/383 (15%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +DP+   S L  C   +++   ++V   I   G + +  + +KL  +Y     L +A  +
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ +K   ++ W++++   +K  DF      F++ +  G+++DSYT   V ++    + +
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H  +LKSG      V  +LV  Y K + +D AR++FD+M  RD+++W  +I   
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 232 --------GANKFLLDVI------------------------LGTAV------------- 246
                   G + F+  ++                        LG AV             
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331

Query: 247 ------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                 +DMY+KCG +DSA+ +F  M  ++V+S+++MIA Y   G   +A+ LF  M   
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+  T  ++L  C+   L++EG R+   + ++  +  D+     ++D+  + G + E
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSMQE 450

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
           A  +   M V KD   W  ++G 
Sbjct: 451 AELVFSEMRV-KDIISWNTIIGG 472



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  I+  G  ++  VAN L+ +YA   AL  AH LF+ +  +D VSW+VM+ G+   
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV---LKSGLDIDQ 193
                    F +  + G++ D  +   ++ AC     +  G    +I+    K    ++ 
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 638

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVID 248
           + C  +VDM A+   +  A +  + MP   D   W  ++   +   DV L   V +
Sbjct: 639 YAC--IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 692


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/563 (38%), Positives = 317/563 (56%), Gaps = 67/563 (11%)

Query: 77  RQVHAQIVAGGTLTNLI--VANKLLYIYALHKA-LTDAHALFNGMKERDSVSWSVMVGGF 133
           +Q+HA +   G     I    +KLL +YAL    L+ A   F+ ++   +  W+ ++ GF
Sbjct: 21  KQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIRGF 80

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL----IHDIVLKSGL 189
            +  +  N F  ++  I    ++D+ T  FV++AC      V+ RL    IH  +++ G 
Sbjct: 81  IQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACAR----VLARLESIQIHTHIVRKGF 136

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQM--------------------PTRDLVTWTV 229
             D  +   L+D+YAK   ID A ++FD+M                    PT  L  +  
Sbjct: 137 IADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKR 196

Query: 230 M----------------------------------IGANKFLLDVILGTAVIDMYAKCGS 255
           M                                  I   +F ++  +   VIDMYAKCG 
Sbjct: 197 MEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGF 256

Query: 256 IDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           +D A  +F+ M  +K++++W+ MI A+  HG+G KAL+LF  M  S V P+ ++++++L 
Sbjct: 257 VDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLC 316

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC+H GLVEEG RLF+SM ++  V+P+VKHY  +VDLLGRAGRL EA  ++ SM    D 
Sbjct: 317 ACNHGGLVEEGFRLFNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDI 375

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            LW  LLGA R H+NV++AE  ++ L+E    + G +VLLSNVYA   RW DV ++R+ M
Sbjct: 376 VLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAM 435

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             R +KK+PG ++IE    IH+F   D +H    EIY  L  +  +++  GY+ +T+F L
Sbjct: 436 KNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVL 495

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HD+ EE K   L  HSEKLA+AFGLI+T EGT I+++KNLR+CGDCH  IK +S I  R 
Sbjct: 496 HDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDRE 555

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRD  RFH F+ G CSCRDYW
Sbjct: 556 IIVRDRVRFHRFKEGFCSCRDYW 578



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 87/197 (44%), Gaps = 5/197 (2%)

Query: 64  ISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK- 119
           + +L +C  +   ++   +H  I       N  V N ++ +YA    +  A+ +F  M  
Sbjct: 210 LGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKAYLVFESMSC 269

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D V+W+ M+  F+   +     E F +  + G+  D  +   V+ AC     +  G  
Sbjct: 270 RKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFR 329

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKFLL 238
           + + +   G+  +     ++VD+  +   + +A  + + MPT  D+V W  ++GA++   
Sbjct: 330 LFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHR 389

Query: 239 DVILGTAVIDMYAKCGS 255
           +V +   V     + GS
Sbjct: 390 NVEIAETVSRKLVEMGS 406


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 321/560 (57%), Gaps = 57/560 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANK--LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +++Q+HA  +  G        NK  +  + +L   ++ A  +FN ++  +  +W+ M+ G
Sbjct: 50  KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109

Query: 133 FSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           F++  +     E F +       L D++T PF+ +A     D+ +G  IH +V+++G D 
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT----------------------- 228
            +FV  +LV MY+    +  A Q+F+ M  RD V W                        
Sbjct: 170 LRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMG 229

Query: 229 ------------------VMIGA-------NKFLLDVIL------GTAVIDMYAKCGSID 257
                             V +GA       + +++ V L        A++D+Y+KCG+  
Sbjct: 230 SEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFR 289

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A+++FD M +++V+SW+++I     +G G +AL LF  +    + P+ ITFV +LYACS
Sbjct: 290 DAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS 349

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H G+++EG   F  M +++ + P ++H+ CMVDLL RAG++ +A   I +M V  +  +W
Sbjct: 350 HCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIW 409

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LLGAC IH +++L E+A   +   + ++ G +VLLSN+YA+  RW DV  +R +M  +
Sbjct: 410 RTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMK 469

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            +KK PG++ +E++N++++F +GD +HPQSEE Y ML  +++ L++ GY+P T   L D+
Sbjct: 470 GVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADI 529

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +EE K   L  H+EK+AIAF L+ TP GT IRIMKNLRVC DCH  IK +S +  R IIV
Sbjct: 530 EEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIV 589

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD +RFHHF+ G+CSC+DYW
Sbjct: 590 RDRSRFHHFKDGSCSCKDYW 609


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/560 (35%), Positives = 321/560 (57%), Gaps = 57/560 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANK--LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +++Q+HA  +  G        NK  +  + +L   ++ A  +FN ++  +  +W+ M+ G
Sbjct: 50  KLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRG 109

Query: 133 FSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           F++  +     E F +       L D++T PF+ +A     D+ +G  IH +V+++G D 
Sbjct: 110 FAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDS 169

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT----------------------- 228
            +FV  +LV MY+     + A Q+F+ M  RD V W                        
Sbjct: 170 LRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMG 229

Query: 229 ------------------VMIGA-------NKFLLDVIL------GTAVIDMYAKCGSID 257
                             V +GA       + +++ V L        A++D+Y+KCG+  
Sbjct: 230 SEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFR 289

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A+++FD M +++V+SW+++I     +G G +AL LF  +    + P+ ITFV +LYACS
Sbjct: 290 DAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS 349

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H G+++EG   F  M +++ + P ++H+ CMVDLL RAG++ +A   I +M V  +  +W
Sbjct: 350 HCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIW 409

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LLGAC IH +++L E+A   +   + ++ G +VLLSN+YA+  RW DV  +R +M  +
Sbjct: 410 RTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMK 469

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            +KK PG++ +E++N++++F +GD +HPQSEE Y ML  +++ L++ GY+P T   L D+
Sbjct: 470 GVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADI 529

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +EE K   L  H+EK+AIAF L+ TP GT IRIMKNLRVC DCH  IK +S +  R IIV
Sbjct: 530 EEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIV 589

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD +RFHHF+ G+CSC+DYW
Sbjct: 590 RDRSRFHHFKDGSCSCKDYW 609


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 305/572 (53%), Gaps = 93/572 (16%)

Query: 64  ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S L +C  +  +R   Q+H +I+      N+ V N L  +YA    +  A  LF+ M  
Sbjct: 159 VSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVI 218

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R+ V+W++M+ G+ K      C + F E     MQ+                        
Sbjct: 219 RNVVTWNLMISGYLKNRQPEKCIDLFHE-----MQV------------------------ 249

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM---------- 230
                 S L  DQ   ++++  Y +   ID+AR++F ++  +D V WT+M          
Sbjct: 250 ------SNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKE 303

Query: 231 ----------------------------------------IGANKFLL----DVILGTAV 246
                                                   +    FL+    D+++ +A+
Sbjct: 304 EDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSAL 363

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           +DMY KCG    A  IF  M+ +NV+SW++MI  Y  +GQ  +AL L+  ML   + P+ 
Sbjct: 364 VDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDS 423

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           +TFV +L AC H GLVEEG   F SM D   + P   HY CMV+L GR+G +D+A+ LI 
Sbjct: 424 VTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLIS 483

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           SMS E +  +W  +L  C +  ++   EMAA+ L+E  P N   Y++LSN+YA  GRW+D
Sbjct: 484 SMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKD 543

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           VA IR LM  + +KK   ++WIE++N++H+F   D THP ++ I+  L  L  KL+ AG+
Sbjct: 544 VASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAGF 603

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG-THIRIMKNLRVCGDCHSFIK 545
            P+TN  LHD  E+ K+ ++  HSEKLA+A+GLI  P G T IRI+KN+R C DCH F+K
Sbjct: 604 SPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCHIFMK 663

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            VS ITRR +I+RD+NRFHHF  G CSC+DYW
Sbjct: 664 FVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 148/312 (47%), Gaps = 31/312 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L +YA    + D   +F+ M  RDSVS++ ++ GF+           F    + G++
Sbjct: 93  NAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLK 152

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
              YT   V+ AC    D+  G+ IH  ++   L  + FVC AL D+YA+C  ID AR+L
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRL 212

Query: 216 FDQMPTRDLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSI 256
           FD+M  R++VTW +MI                     +    D +  ++V+  Y + G I
Sbjct: 213 FDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYI 272

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           D AR++F  +R+K+ + W+ MI     +G+ + AL LF  ML     P+  T  S++ +C
Sbjct: 273 DEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSC 332

Query: 317 S-----HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +     + G V  G      + DD  V       + +VD+  + G   +A  +  +M   
Sbjct: 333 AKLASLYHGQVVHGKAFLMGVNDDLLVS------SALVDMYCKCGVTRDAWTIFSTMQT- 385

Query: 372 KDEGLWGALLGA 383
           ++   W +++G 
Sbjct: 386 RNVVSWNSMIGG 397



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 107/235 (45%), Gaps = 59/235 (25%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------------------- 231
           D F   A++ +YAK  +++D R +FD MP+RD V++  +I                    
Sbjct: 88  DNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ 147

Query: 232 ---------------GANKFLLD-------------------VILGTAVIDMYAKCGSID 257
                           A   LLD                   V +  A+ D+YA+CG ID
Sbjct: 148 KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEID 207

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            AR +FDRM  +NV++W+ MI+ Y  + Q +K +DLF  M  S + P+++T  S+L A  
Sbjct: 208 QARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYI 267

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
             G ++E  ++F  + +      D   +T M+    + G+ ++AL L   M +E 
Sbjct: 268 QAGYIDEARKVFGEIRE-----KDEVCWTIMIVGCAQNGKEEDALLLFSEMLLEN 317



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 21/181 (11%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D F+   L+++YAK   I  AR+LFD+M  RD  +W  M+                 +YA
Sbjct: 57  DTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLS----------------LYA 100

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           K G ++  R IFD M  ++ +S++ +I+ +  +G+G  AL +F  M    + P   T VS
Sbjct: 101 KSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVS 160

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC--MVDLLGRAGRLDEALKLIESMS 369
           +L AC+    +  G ++   +            + C  + DL  R G +D+A +L + M 
Sbjct: 161 VLNACTQLLDLRRGKQIHGRI---IICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMV 217

Query: 370 V 370
           +
Sbjct: 218 I 218


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/551 (36%), Positives = 310/551 (56%), Gaps = 56/551 (10%)

Query: 68  LSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           L  RN  + + +  H +I+      ++ + N L+  Y+    +  A  +F+GM ER  VS
Sbjct: 62  LCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVS 121

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W+ M+G +++        + F E    G +   +T+  V+ AC    D +  + +H + +
Sbjct: 122 WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSV 181

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------ 233
           K+ +D++ +V  AL+D+YAKC +I DA Q+F+ M  +  VTW+ M+              
Sbjct: 182 KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALL 241

Query: 234 ------------NKFLL------------------------------DVILGTAVIDMYA 251
                       N+F L                              +V + ++ +DMYA
Sbjct: 242 LYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYA 301

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KCGS+  +  IF  +++KN+  W+ +I+ +  H + K+ + LF  M    + PN +TF S
Sbjct: 302 KCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSS 361

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           LL  C HTGLVEEG R F  M   + + P+V HY+CMVD+LGRAG L EA +LI+S+  +
Sbjct: 362 LLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD 421

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
               +WG+LL +CR++KN++LAE+AA+ L E +P+N G++VLLSN+YA   +W+++AK R
Sbjct: 422 PTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSR 481

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
            L+    +KK+ G +WI++++K+H FSVG+S HP+  EI   L  L  K    GY P   
Sbjct: 482 KLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVE 541

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
            ELHDV+   K   L  HSEKLA+ FGL+  PE + +RIMKNLR+C DCH F+K  S  T
Sbjct: 542 HELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMAT 601

Query: 552 RRVIIVRDANR 562
           RR IIVRD NR
Sbjct: 602 RRFIIVRDVNR 612



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 56/278 (20%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C     ++  +  H  +++  L+ D  +   L++ Y+KC  ++ ARQ+FD M  R 
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
           LV+W  MIG                         ++F +  +L                 
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 178

Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                        GTA++D+YAKCG I  A ++F+ M+ K+ ++WS+M+A Y  +   ++
Sbjct: 179 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 238

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL L+       +  N+ T  S++ ACS+   + EG ++ + +        +V   +  V
Sbjct: 239 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAV 297

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           D+  + G L E+  +I S   EK+  LW  ++     H
Sbjct: 298 DMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKH 334


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/573 (36%), Positives = 318/573 (55%), Gaps = 39/573 (6%)

Query: 44  VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
            P+   P  Q +   +    +  L  C N+ ++RQ+H Q++  G + + I A+KLL   A
Sbjct: 2   APILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61

Query: 104 LHKA--LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
              +  L  A  +F+ +   ++  W+ M+ G+S   +       +   +   +  ++YT 
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
           PF+++AC     +   + IH  ++K G   + +   +L+++Y+K   I  AR LFDQ+  
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 222 RD---------------------LVT---------------WT-VMIGANKFLLDVILGT 244
           RD                     LV+               W    I  ++  +D ILG 
Sbjct: 182 RDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGC 241

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            +IDMYAKCG ++ A E+F +M +K V  W+AMI+ Y  HG+G++AL+ F  M ++ V P
Sbjct: 242 VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 301

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N++TF  +L ACSH GLV E   LF SM      +P ++HY CMVDLLGRAG L EA +L
Sbjct: 302 NQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEEL 361

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           IE+M V+ +  +WGALL AC IH N++L +   K L++  P + G Y+ L++++A AG W
Sbjct: 362 IENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEW 421

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
              A++R  M  + + K+PG + I V    H+F  GD +HPQ +EI  ML  + E+L   
Sbjct: 422 NQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREE 481

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY P     L D++++ K   ++ HSEKLA+ FGLI+T  G  IRI+KNLRVC DCH+ I
Sbjct: 482 GYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVI 541

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K +S +  R I++RD  RFH F+ G C+C DYW
Sbjct: 542 KLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/555 (36%), Positives = 319/555 (57%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH  ++  G   +   +N L+ +YA    L  +  +F+GMK +DSVSW+ M+  + + 
Sbjct: 395 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 454

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    + F+  ++  ++ DS T   ++       D+ +G+ +H  + K G + +  V 
Sbjct: 455 GSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVS 513

Query: 197 AALVDMYAKC-------KVIDDAR------------------------QLFDQMPTR--- 222
             LVDMYAKC       KV ++ +                        ++  +M T    
Sbjct: 514 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 573

Query: 223 -DLVTWTVMIGANKFLL-------------------DVILGTAVIDMYAKCGSIDSAREI 262
            D+ T   ++     L                    DV +G  +I+MY+KCGS+ ++ ++
Sbjct: 574 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 633

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M+ K+V++W+A+I+A G +G+GKKA+  F  M ++ ++P+ + FV++++ACSH+GLV
Sbjct: 634 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 693

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEGL  F  M  D+ + P ++HY C+VDLL R+  LD+A   I SM ++ D  +WGALL 
Sbjct: 694 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 753

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+  + ++A+  ++ ++E  P + G+YVL+SNVYA  G+W  V  IR  +  R LKK 
Sbjct: 754 ACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKD 813

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +W+E++NK++ F  G     Q EE+ ++L  L+  +   GYI +  F LHD+DE+ K
Sbjct: 814 PGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEK 873

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSE+LAIAFGL+ T  GT +++MKNLRVC DCH+  K++S I +R ++VRDANR
Sbjct: 874 RDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANR 933

Query: 563 FHHFEGGACSCRDYW 577
           FH F+ GACSC DYW
Sbjct: 934 FHVFKDGACSCGDYW 948



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 178/391 (45%), Gaps = 59/391 (15%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F S + +C  +      + +H +++  G  ++L + N L+ +Y     L  A  +F
Sbjct: 173 DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVF 232

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  RD VSW+ ++ G++    +    E +  F   G+  DSYT+  V+RAC     + 
Sbjct: 233 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 292

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G +IH ++ K G+  D  V   L+ MY K   + D R++FD+M  RD V+W  MI    
Sbjct: 293 EGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 352

Query: 234 ----------------NKFLLDVILGTAV------------------------------- 246
                           N+F  D++  T++                               
Sbjct: 353 QVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 412

Query: 247 ----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
               I+MYAKCG++ +++E+F  M+ K+ +SW++MI  Y  +G   +A+ LF MM  + V
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-KTDV 471

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +T+V LL   +  G +  G  L   +        ++     +VD+  + G + ++L
Sbjct: 472 KPDSVTYVMLLSMSTQLGDLXLGKELHCDL-AKMGFNSNIVVSNTLVDMYAKCGEMGDSL 530

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           K+ E+M   +D   W  ++ +C   ++ +L 
Sbjct: 531 KVFENMKA-RDIITWNTIIASCVHSEDCNLG 560



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 188/421 (44%), Gaps = 65/421 (15%)

Query: 58  VDPKFFISSLL-SCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           V   + +SS+L +C  +  + +   +H  I   G   ++IV N LL +Y     L D   
Sbjct: 272 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M  RD+VSW+ M+ G+S+V  +    + F E +    + D  T+  +++AC    D
Sbjct: 332 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGD 390

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI------------------------ 209
           +  G+ +HD ++ SG + D      L++MYAKC  +                        
Sbjct: 391 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 450

Query: 210 -------DDARQLFDQMPTR---DLVTWTVMIGANKFLLDVILG---------------- 243
                  D+A +LF  M T    D VT+ +++  +  L D+ LG                
Sbjct: 451 YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNI 510

Query: 244 ---TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                ++DMYAKCG +  + ++F+ M+ +++I+W+ +IA+  +       L +   M + 
Sbjct: 511 VVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTE 570

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T +S+L  CS      +G  +   ++    +  DV     ++++  + G L  
Sbjct: 571 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF-KLGLESDVPVGNVLIEMYSKCGSLRN 629

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNVY 418
           + ++ + M   KD   W AL+ AC ++      + A ++  E +     P H   ++ ++
Sbjct: 630 SFQVFKLMKT-KDVVTWTALISACGMYGE---GKKAVRAFGEMEAAGIVPDHVAFVAIIF 685

Query: 419 A 419
           A
Sbjct: 686 A 686



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 176/406 (43%), Gaps = 59/406 (14%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV- 124
           +L S     Q+ ++H+ I+  G   ++I + KL+  YA  +  T + ++F      ++V 
Sbjct: 81  ALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVY 140

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            W+ ++   +    F      + E  R  +Q D+YT P VI AC    D  M + IHD V
Sbjct: 141 XWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 200

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFLL--- 238
           L  G   D ++  AL+DMY +   +D AR++F++MP RD+V+W  +I    AN +     
Sbjct: 201 LXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEAL 260

Query: 239 ----------------------------------DVILG--------------TAVIDMY 250
                                             D+I G                ++ MY
Sbjct: 261 EIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY 320

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            K   +   R IFD+M  ++ +SW+ MI  Y   G  ++++ LF M + ++  P+ +T  
Sbjct: 321 CKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF-MEMVNQFKPDLLTIT 379

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L AC H G +E G  +   M        D      ++++  + G L  + ++   M  
Sbjct: 380 SILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKC 438

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSL-LERQPQNPGHYVLLS 415
            KD   W +++     + + D A    K +  + +P +  + +LLS
Sbjct: 439 -KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLS 483


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 300/537 (55%), Gaps = 55/537 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N LL +Y+    L  A A+F  M +R  VS++ M+ G+++        + F E    G+ 
Sbjct: 184 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 243

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            D YT+  V+  C   + +  G+ +H+ + ++ L  D FV  AL+DMYAKC  + +A  +
Sbjct: 244 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 303

Query: 216 FDQMPTRDLVTWTVMIGA--------------------NKFLLDVILGTAVIDMYAKCGS 255
           F +M  +D+++W  +IG                      +F  D      V+   A   +
Sbjct: 304 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 363

Query: 256 IDSAREI-----------------------------------FDRMRQKNVISWSAMIAA 280
            D  REI                                   FD +  K+++SW+ MIA 
Sbjct: 364 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 423

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           YG HG GK+A+ LF  M  + +  + I+FVSLLYACSH+GLV+EG R F+ M  +  + P
Sbjct: 424 YGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 483

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            V+HY C+VD+L R G L +A + IE+M +  D  +WGALL  CRIH +V LAE  A+ +
Sbjct: 484 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 543

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
            E +P+N G+YVL++N+YA A +W+ V ++R  + +R L+K PG +WIE++ +++ F  G
Sbjct: 544 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAG 603

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           DS++P++E I   L  +  ++   GY P T + L D +E  K   L  HSEKLA+A G+I
Sbjct: 604 DSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGII 663

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++  G  IR+ KNLRVCGDCH   K +S +TRR I++RD+NRFH F+ G CSCR +W
Sbjct: 664 SSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 159/348 (45%), Gaps = 56/348 (16%)

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ +K   ++ W++++   +K  DF      F++ +  G+++DSYT   V ++    + +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H  +LKSG      V  +LV  Y K + +D AR++FD+M  RD+++W  +I   
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 232 --------GANKFLLDVI------------------------LGTAV------------- 246
                   G + F+  ++                        LG AV             
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 247 ------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                 +DMY+KCG +DSA+ +F  M  ++V+S+++MIA Y   G   +A+ LF  M   
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+  T  ++L  C+   L++EG R+   + ++  +  D+     ++D+  + G + E
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSMQE 299

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           A  +   M V KD   W  ++G    +   + A      LLE +  +P
Sbjct: 300 AELVFSEMRV-KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 346



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  I+  G  ++  VAN L+ +YA   AL  AH LF+ +  +D VSW+VM+ G+   
Sbjct: 368 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 427

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV---LKSGLDIDQ 193
                    F +  + G++ D  +   ++ AC     +  G    +I+    K    ++ 
Sbjct: 428 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 487

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVID 248
           + C  +VDM A+   +  A +  + MP   D   W  ++   +   DV L   V +
Sbjct: 488 YAC--IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 541


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 300/555 (54%), Gaps = 54/555 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             Q+H+QI+      N  V + L+ +YA    L  A  +      +D VSW+ M+ G+++ 
Sbjct: 510  EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    TFR+ +  G++ D   L   + AC   + +  G+ IH     SG   D    
Sbjct: 570  NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 629

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVIL-------- 242
             ALV +Y++C  I+++   F+Q    D + W  ++      G N+  L V +        
Sbjct: 630  NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 689

Query: 243  ------GTAV----------------------------------IDMYAKCGSIDSAREI 262
                  G+AV                                  I MYAKCGSI  A + 
Sbjct: 690  NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 749

Query: 263  FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
            F  +  KN +SW+A+I AY  HG G +ALD F  M+ S V PN +T V +L ACSH GLV
Sbjct: 750  FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 809

Query: 323  EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            ++G+  F SM  ++ + P  +HY C+VD+L RAG L  A + I+ M ++ D  +W  LL 
Sbjct: 810  DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869

Query: 383  ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            AC +HKN+++ E AA  LLE +P++   YVLLSN+YA + +W      R  M  + +KK 
Sbjct: 870  ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929

Query: 443  PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            PG +WIEV+N IH F VGD  HP ++EI+     L+++    GY+ D    L+++  E K
Sbjct: 930  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQK 989

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               ++ HSEKLAI+FGL++ P    I +MKNLRVC DCH++IK VS ++ R IIVRDA R
Sbjct: 990  DPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYR 1049

Query: 563  FHHFEGGACSCRDYW 577
            FHHFEGGACSC+DYW
Sbjct: 1050 FHHFEGGACSCKDYW 1064



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 166/386 (43%), Gaps = 59/386 (15%)

Query: 59  DPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D     S +++C     +F+ +Q+HA     G  +N  +   LL +YA    +  A   F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
              +  + V W+VM+  +  + D  N F  FR+     +  + YT P +++ C    D+ 
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GAN 234
           +G  IH  ++K+   ++ +VC+ L+DMYAK   +D A  +  +   +D+V+WT MI G  
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567

Query: 235 KFLLD-------------------VILGTAV----------------------------- 246
           ++  D                   V L  AV                             
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                + +Y++CG I+ +   F++    + I+W+A+++ +   G  ++AL +F  M    
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 687

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  N  TF S + A S T  +++G ++ + +        + +    ++ +  + G + +A
Sbjct: 688 IDNNNFTFGSAVKAASETANMKQGKQVHAVI-TKTGYDSETEVCNALISMYAKCGSISDA 746

Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
            K    +S  K+E  W A++ A   H
Sbjct: 747 EKQFLEVST-KNEVSWNAIINAYSKH 771



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 163/382 (42%), Gaps = 38/382 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           + Q+HA+I+  G   + +V N L+ +Y+ +  +  A  +F+G++ +D  SW  M+ G SK
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 265

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                     F +    G+    Y    V+ AC+  + + +G  +H +VLK G   D +V
Sbjct: 266 NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 325

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           C ALV +Y     +  A  +F  M  RD VT+  +I                   ++CG 
Sbjct: 326 CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING----------------LSQCGY 369

Query: 256 IDSAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            + A E+F RM     + +  + ++++ A    G   +   L           N     +
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE---ALKLIESM 368
           LL   +    +E  L        D+ +  +V++      +L   G LD+   + ++   M
Sbjct: 430 LLNLYAKCADIETAL--------DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 481

Query: 369 SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRW 424
            +E+   ++  + ++L  C    +++L E     +++   Q N     +L ++YA  G+ 
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL 541

Query: 425 QDVAKIRDLMTRRRLKKIPGWT 446
            D A   D++ R   K +  WT
Sbjct: 542 -DTA--WDILIRFAGKDVVSWT 560



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 96/349 (27%)

Query: 131 GGFSKVADFINCFETFRE-----FIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIV 184
             F+ ++ +I+  E+F+E         G++ +  TL +++  C +    +  GR +H  +
Sbjct: 52  ASFAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQI 111

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDVIL 242
           LK GLD +  +   L D Y     +  A ++FD+MP R + TW  MI   A++ L+  + 
Sbjct: 112 LKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVF 171

Query: 243 G-----------------------------------------------------TAVIDM 249
           G                                                       +ID+
Sbjct: 172 GLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDL 231

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y++ G +D AR +FD +R K+  SW AMI+    +    +A+ LF  M    ++P    F
Sbjct: 232 YSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAF 291

Query: 310 VSLLYACSHTGLVEEGLRL--------FSS-----------------------MWDDFAV 338
            S+L AC     +E G +L        FSS                       ++ + + 
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 351

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           R D   Y  +++ L + G  ++A++L + M    +E D     +L+ AC
Sbjct: 352 R-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 399


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/522 (39%), Positives = 298/522 (57%), Gaps = 23/522 (4%)

Query: 63  FISSLLSCRNI--FQI-RQVHAQIVAGGTLTN----LIVANKLLYIYALHKALTDAHALF 115
           + + + +C N+  FQ+ +QVHA I+      N    L V+N L+ +Y  +  + +A  +F
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  R+ ++W+ ++ G+          E  + F       +  TL  +I          
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRM----EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
            G  +   +   G +   F  A  +   +    +++ RQL  Q+         V +G   
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL---------VHLGYES 458

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
            L    +G A+I MYAKCG +++A  +F  M   +++SW++MIAA G HG G KA++LF 
Sbjct: 459 SL---SVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFD 515

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            ML   V P+RITF+++L ACSH GLVE+G   F+SM + + + P   HY  MVDL  RA
Sbjct: 516 QMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRA 575

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G    A  +I+SM  +    +W ALL  CRIH N+DL   AA+ L +  PQN G YVLLS
Sbjct: 576 GMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLS 635

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA+ GRW +VAK+R LM  + ++K P  +WIEVENK+H F V D  HP+   +YR L 
Sbjct: 636 NIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLE 695

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            L  +++  GYIPDT F LHD++ E K   L +HSEKLA+ FG++  P G  +R+ KN+R
Sbjct: 696 QLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIR 755

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +CGDCH+  K +S + RR IIVRD  RFHHF+ G CSCRDYW
Sbjct: 756 ICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 188/478 (39%), Gaps = 102/478 (21%)

Query: 62  FFISSLLSCRNIF-----QIRQVHAQIVAGGT-LTNLIVANKLLYIYALH--------KA 107
           F  +S+LS   +F     Q  Q+H  +V  G    +  V N LL +Y            A
Sbjct: 148 FTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSA 207

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE---------------FIRC 152
           +  A  LF+ M +RD ++W+ M+ G+ +  D     E F                 ++ C
Sbjct: 208 MVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 153 G----------------MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           G                +Q D  T   +I AC +     MG+ +H  +LK+ L+ +   C
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFC 327

Query: 197 ----AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
                AL+ +Y K   +D+AR++F  MP R+++TW                 A++  Y  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITW----------------NAILSGYVN 371

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
            G ++ A+  F+ M  KN+++ + MI+    +G G + L LF  M      P    F   
Sbjct: 372 AGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGA 431

Query: 313 LYACSHTGLVEEGLRLFS------------------SMWDD----------FAVRP--DV 342
           L ACS  G +E G +L +                  SM+            F   P  D+
Sbjct: 432 LTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDL 491

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
             +  M+  LG+ G   +A++L + M    V  D   +  +L AC     V+       S
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNS 551

Query: 400 LLERQPQNP--GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
           +LE     P   HY  + +++  AG +     + D M  +     P W  +    +IH
Sbjct: 552 MLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK--PGAPVWEALLAGCRIH 607



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 168/369 (45%), Gaps = 58/369 (15%)

Query: 63  FISSLLS--CR--NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG- 117
           F++ LL   C+  N+   RQ+  +I       + I    L+  Y     L     +FNG 
Sbjct: 50  FLNRLLEMYCKSSNLVYARQLFEEIPN----PDAIARTTLITAYCALGNLELGREIFNGT 105

Query: 118 -MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +  RDSV ++ M+ G++   D  +  E FR   R   + D +T   V+ A      + +
Sbjct: 106 PLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALV----LFV 161

Query: 177 GR-----LIHDIVLKSGLD-IDQFVCAALVDMYAK--------CKVIDDARQLFDQMPTR 222
           G       +H  V+K+G+  +   V  AL+ +Y K        C  +  AR+LFD+MP R
Sbjct: 162 GNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKR 221

Query: 223 DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
           D +TWT MI                  Y +   ++ ARE+F+ M +    +W+AMI+ Y 
Sbjct: 222 DELTWTTMITG----------------YVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           + G  ++AL L   M    +  + IT+ +++ AC++ G  + G ++ + +  +  + P+ 
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKN-ELNPN- 323

Query: 343 KHYTC------MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            H  C      ++ L  +  ++DEA K+  +M V ++   W A+L     + N    E  
Sbjct: 324 -HSFCLSVSNALITLYCKNNKVDEARKIFYAMPV-RNIITWNAILSG---YVNAGRME-E 377

Query: 397 AKSLLERQP 405
           AKS  E  P
Sbjct: 378 AKSFFEEMP 386



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 45/315 (14%)

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
           +D     + R +H  ++ SG          L++MY K   +  ARQLF+++P  D +  T
Sbjct: 24  QDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIART 83

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD--RMRQKNVISWSAMIAAYGYHGQ 286
            +I A                Y   G+++  REIF+   +  ++ + ++AMI  Y ++G 
Sbjct: 84  TLITA----------------YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGD 127

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYA----------CS--HTGLVEEGLRLFSSMWD 334
           G  AL+LF  M      P+  TF S+L A          C   H  +V+ G+   SS   
Sbjct: 128 GHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVL 187

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           +  +   VK  +   +L      +  A KL + M  ++DE  W  ++      +N DL  
Sbjct: 188 NALLSVYVKRAS---ELGISCSAMVSARKLFDEMP-KRDELTWTTMITG--YVRNDDLN- 240

Query: 395 MAAKSLLERQPQNPG-HYVLLSNVYANAGRWQDVA----KIRDLMTRRRLKKIPGWTWIE 449
             A+ + E   +N G  +  + + Y + G +Q+      K+R L    +   I   T I 
Sbjct: 241 -GAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGI--QFDDITYTTIIS 297

Query: 450 VENKIHQFSVGDSTH 464
               +  F +G   H
Sbjct: 298 ACANVGSFQMGKQVH 312


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/563 (36%), Positives = 315/563 (55%), Gaps = 56/563 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER--DSVSWSV 128
           + + + ++VH+ +V  G  ++ ++AN L+ +Y     + +A ++F+ ++E+  D +SW+ 
Sbjct: 38  KALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNG 97

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           ++G +++          F+     G+  +  TL   I AC        GR++H I +   
Sbjct: 98  IIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEEGRIVHAIAVDKR 157

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL------------------------ 224
           L+ D  V  +LV+M+ KCK +D AR +FD +P ++L                        
Sbjct: 158 LESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFR 217

Query: 225 -----------VTWTVMIGANKFL-------------------LDVILGTAVIDMYAKCG 254
                      VT+  +I A   L                   +DV LGTAV+  Y KCG
Sbjct: 218 FMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCG 277

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            +D+AR IFD + +KN ++WSA++AAY  +G   +A++L+  M+   +  N ITF+ LL+
Sbjct: 278 RLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLF 337

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH G   +G+  F SM  DF V P  +HY  ++DLLGR+G+L  +  LI SM  E D 
Sbjct: 338 ACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDS 397

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
             W ALLGACR+H +VD     A+ + E  P++ G Y+LLSN+Y++ GR  +  + R  M
Sbjct: 398 SAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAM 457

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             R + K PG + IEV++++H+F      HPQ   I+  +  L  +++ AGY+ D    L
Sbjct: 458 RLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVL 517

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            DV+EE K   L+ HSE+LAIAFGLI+TP GT + I+KNLRVC DCH+ +K +S +  R 
Sbjct: 518 RDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRK 577

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I+VRDA RFHHFE GACSC DYW
Sbjct: 578 IVVRDAIRFHHFENGACSCGDYW 600



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 130/285 (45%), Gaps = 60/285 (21%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           ++ +Y L  +++ C D K ++ G+ +H  ++K G   D+ +   L++MY KC  I +AR 
Sbjct: 23  EISTYVL--LLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARS 80

Query: 215 LFDQMPTR--DLVTWTVMIGA--------------NKFLLDVILGTAV--IDMYAKCGSI 256
           +FDQ+  +  D+++W  +IGA                  L+ ++   V  I+    C S+
Sbjct: 81  VFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASL 140

Query: 257 DS--------------------------------------AREIFDRMRQKNVISWSAMI 278
            S                                      AR +FD + +KN+++W+ M+
Sbjct: 141 PSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMV 200

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           A Y  + Q KKA+ +F  M    V P+ +TF++++ AC+      EG R+         +
Sbjct: 201 AVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEG-RMVHDDITASGI 259

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
             DV   T ++   G+ GRLD A  + +S+  +K+   W A+L A
Sbjct: 260 PMDVALGTAVMHFYGKCGRLDNARAIFDSLG-KKNTVTWSAILAA 303


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/514 (39%), Positives = 289/514 (56%), Gaps = 89/514 (17%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----- 207
           G+Q D +T PF++++      + +GR +H  +L+ GL ID FV  +L+ MY+ C      
Sbjct: 59  GVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFA 118

Query: 208 --------------------------VIDDARQLFDQMPTRDLVTWTV------------ 229
                                     ++D AR LF  MP R++++W+             
Sbjct: 119 RQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYK 178

Query: 230 ----------MIGANK-----------------------------------FLLDVILGT 244
                     M+G N                                      +DV+LGT
Sbjct: 179 EALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGT 238

Query: 245 AVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           A+IDMYAKCGS++ A  +F  +   K+V++WSAMI+    HG  ++ + LF  M++  V 
Sbjct: 239 ALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVR 298

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN +TF+++  AC H GLV EG      M +D+++ P ++HY CMVDL GRAGR+ EA  
Sbjct: 299 PNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWN 358

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           +++SM +E D  +WGALL   R+H +++  E+A K L+E +P N G YVLLSNVYA  GR
Sbjct: 359 VVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGR 418

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W+DV  +RDLM    +KK+PG + IEV   +H+F VGD +HP++ +I+ ML  + E+L++
Sbjct: 419 WEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKV 478

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            GY+ +T   L D+DEE K   L  HSEKLA+A+G + T  GT IRI+KNLR+C DCH  
Sbjct: 479 EGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVA 538

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IK +S +  R IIVRD NRFHHF  G CSCRDYW
Sbjct: 539 IKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/467 (41%), Positives = 271/467 (58%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A   F  M  ++ V+W+ M+ G+ +     N  + F+  +  G + +  +L  V+  C +
Sbjct: 180 AEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSN 239

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +G+ +H ++ KS                                     V+W   
Sbjct: 240 LSALKLGKQVHQLICKSP------------------------------------VSW--- 260

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                   ++  GT+++ MY KCG ++ A ++F  M QK+V++W+AMI+ Y  HG G+KA
Sbjct: 261 --------NITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKA 312

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M    + P+ ITFV++L AC+H G V+ G+  F+SM  D+ V     HYTC+VD
Sbjct: 313 LYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVD 372

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGR G+L EA+ LI+ M  +    ++G LLGACRIHKN++LAE AAK+LL   P++   
Sbjct: 373 LLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAG 432

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YV L+NVYA   RW  VA +R  M   ++ K PG++WIEV++ +H+F  GD  HP+   I
Sbjct: 433 YVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFI 492

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  L  L  K+ LAGY+PD  + LHDV EE K   L  HSEKLAIA+GLI  P GT IR+
Sbjct: 493 HEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRV 552

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLRVCGDCHS  K++SAI  RVIIVRD  RFHHF  G CSC DYW
Sbjct: 553 FKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 144/313 (46%), Gaps = 24/313 (7%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           +N+I +N+++  +     L  A  +F  M  + +V+W+ M+ G+S     I   +  R+ 
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKI---KVARQL 59

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
                + D ++   ++       D+   RL  D +       D      ++  +++  ++
Sbjct: 60  FDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVK----DTASWNTMISGFSQNGMM 115

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA---------NKFLLD------VILGTAVIDMYAKCG 254
           D AR+LF  MP R+ V+W  MI            K L +      V+  TA+I  + K G
Sbjct: 116 DQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFG 175

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            I+ A + F+ M  KN+++W+AMIA Y  + Q +  L LF  M+ S   PN  +  S+L 
Sbjct: 176 KIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLL 235

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            CS+   ++ G ++   +     V  ++   T ++ +  + G L++A KL   M  +KD 
Sbjct: 236 GCSNLSALKLGKQVHQLICKS-PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDV 293

Query: 375 GLWGALLGACRIH 387
             W A++     H
Sbjct: 294 VTWNAMISGYAQH 306



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 32/204 (15%)

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           I  ARQLFD++P  D+ ++ +M+                  Y     ++SAR  FD+M  
Sbjct: 53  IKVARQLFDRIPEPDIFSYNIMLAC----------------YLHNADVESARLFFDQMPV 96

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-LR 327
           K+  SW+ MI+ +  +G   +A +LF +M     + N +++ +++     +G VE G L 
Sbjct: 97  KDTASWNTMISGFSQNGMMDQARELFLVM----PVRNSVSWNAMI-----SGYVESGDLD 147

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA---- 383
           L   +++   VR  V  +T M+    + G+++ A K  E M + K+   W A++      
Sbjct: 148 LAKQLFEVAPVR-SVVAWTAMITGFMKFGKIELAEKYFEEMPM-KNLVTWNAMIAGYIEN 205

Query: 384 CRIHKNVDLAEMAAKSLLERQPQN 407
           C+    + L +   +S     P +
Sbjct: 206 CQAENGLKLFKRMVESGFRPNPSS 229



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY-GYHGQGKKALDLFPMM 297
           +VI    VI  + + G ++SA  +F+ M  K  ++W++M+A Y    G+ K A  LF   
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF--- 60

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
              R+    I   +++ AC       E  RLF   +D   V+ D   +  M+    + G 
Sbjct: 61  --DRIPEPDIFSYNIMLACYLHNADVESARLF---FDQMPVK-DTASWNTMISGFSQNGM 114

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
           +D+A +L   M V ++   W A++       ++DL    AK L E  P
Sbjct: 115 MDQARELFLVMPV-RNSVSWNAMISGYVESGDLDL----AKQLFEVAP 157


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/555 (36%), Positives = 319/555 (57%), Gaps = 55/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH  ++  G   +   +N L+ +YA    L  +  +F+GMK +DSVSW+ M+  + + 
Sbjct: 336 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 395

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F    + F+  ++  ++ DS T   ++       D+ +G+ +H  + K G + +  V 
Sbjct: 396 GSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVS 454

Query: 197 AALVDMYAKC-------KVIDDAR------------------------QLFDQMPTR--- 222
             LVDMYAKC       KV ++ +                        ++  +M T    
Sbjct: 455 NTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVT 514

Query: 223 -DLVTWTVMIGANKFLL-------------------DVILGTAVIDMYAKCGSIDSAREI 262
            D+ T   ++     L                    DV +G  +I+MY+KCGS+ ++ ++
Sbjct: 515 PDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQV 574

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M+ K+V++W+A+I+A G +G+GKKA+  F  M ++ ++P+ + FV++++ACSH+GLV
Sbjct: 575 FKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLV 634

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           EEGL  F  M  D+ + P ++HY C+VDLL R+  LD+A   I SM ++ D  +WGALL 
Sbjct: 635 EEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLS 694

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACR+  + ++AE  ++ ++E  P + G+YVL+SN+YA  G+W  V  IR  +  R LKK 
Sbjct: 695 ACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKD 754

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +W+E++NK++ F  G     Q EE+ ++L  L+  +   GYI +  F LHD+DE+ K
Sbjct: 755 PGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEK 814

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L  HSE+LAIAFGL+ T  GT +++MKNLRVC DCH+  K++S I +R ++VRDANR
Sbjct: 815 RDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANR 874

Query: 563 FHHFEGGACSCRDYW 577
           FH F+ GACSC DYW
Sbjct: 875 FHVFKDGACSCGDYW 889



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 178/391 (45%), Gaps = 59/391 (15%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F S + +C  +      + +H +++  G  ++L + N L+ +Y     L  A  +F
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  RD VSW+ ++ G++    +    E +  F   G+  DSYT+  V+RAC     + 
Sbjct: 174 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 233

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G +IH ++ K G+  D  V   L+ MY K   + D R++FD+M  RD V+W  MI    
Sbjct: 234 EGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 293

Query: 234 ----------------NKFLLDVILGTAV------------------------------- 246
                           N+F  D++  T++                               
Sbjct: 294 QVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTA 353

Query: 247 ----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
               I+MYAKCG++ +++E+F  M+ K+ +SW++MI  Y  +G   +A+ LF MM  + V
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMM-KTDV 412

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +T+V LL   +  G +  G  L   +        ++     +VD+  + G + ++L
Sbjct: 413 KPDSVTYVMLLSMSTQLGDLHLGKELHCDL-AKMGFNSNIVVSNTLVDMYAKCGEMGDSL 471

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           K+ E+M   +D   W  ++ +C   ++ +L 
Sbjct: 472 KVFENMKA-RDIITWNTIIASCVHSEDCNLG 501



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 188/421 (44%), Gaps = 65/421 (15%)

Query: 58  VDPKFFISSLL-SCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           V   + +SS+L +C  +  + +   +H  I   G   ++IV N LL +Y     L D   
Sbjct: 213 VPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M  RD+VSW+ M+ G+S+V  +    + F E +    + D  T+  +++AC    D
Sbjct: 273 IFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGD 331

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI------------------------ 209
           +  G+ +HD ++ SG + D      L++MYAKC  +                        
Sbjct: 332 LEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINV 391

Query: 210 -------DDARQLFDQMPTR---DLVTWTVMIGANKFLLDVILG---------------- 243
                  D+A +LF  M T    D VT+ +++  +  L D+ LG                
Sbjct: 392 YIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNI 451

Query: 244 ---TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                ++DMYAKCG +  + ++F+ M+ +++I+W+ +IA+  +       L +   M + 
Sbjct: 452 VVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTE 511

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T +S+L  CS      +G  +   ++    +  DV     ++++  + G L  
Sbjct: 512 GVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF-KLGLESDVPVGNVLIEMYSKCGSLRN 570

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNVY 418
           + ++ + M   KD   W AL+ AC ++      + A ++  E +     P H   ++ ++
Sbjct: 571 SFQVFKLMKT-KDVVTWTALISACGMYGE---GKKAVRAFGEMEAAGIVPDHVAFVAIIF 626

Query: 419 A 419
           A
Sbjct: 627 A 627



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 176/406 (43%), Gaps = 59/406 (14%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +L S     Q+ ++H+ I+  G   ++I + KL+  YA  +  T + ++F      ++V 
Sbjct: 22  ALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVY 81

Query: 126 -WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            W+ ++   +    F      + E  R  +Q D+YT P VI AC    D  M + IHD V
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 141

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFLL--- 238
           L  G   D ++  AL+DMY +   +D AR++F++MP RD+V+W  +I    AN +     
Sbjct: 142 LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEAL 201

Query: 239 ----------------------------------DVILG--------------TAVIDMY 250
                                             D+I G                ++ MY
Sbjct: 202 EIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMY 261

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            K   +   R IFD+M  ++ +SW+ MI  Y   G  ++++ LF M + ++  P+ +T  
Sbjct: 262 CKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF-MEMVNQFKPDLLTIT 320

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L AC H G +E G  +   M        D      ++++  + G L  + ++   M  
Sbjct: 321 SILQACGHLGDLEFGKYVHDYMITS-GYECDTTASNILINMYAKCGNLLASQEVFSGMKC 379

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSL-LERQPQNPGHYVLLS 415
            KD   W +++     + + D A    K +  + +P +  + +LLS
Sbjct: 380 -KDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLS 424


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/602 (33%), Positives = 326/602 (54%), Gaps = 59/602 (9%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPKFFI--SSLLSCRNIFQI--RQVHAQIVAGGTL 89
           G+ QN  NP    ++        ++ P  ++  +++ SC +   +  +Q H   +  G  
Sbjct: 97  GYMQNG-NPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLE 155

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
            +  V N L+ +Y+    +  A  +   +   D   ++++V G  +        +  +  
Sbjct: 156 FHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLI 215

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           I  G++ ++ T   + R C   KDI +G+ +H  +LKS +D D ++ ++++DMY KC  +
Sbjct: 216 ISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNV 275

Query: 210 DDARQLFDQMPTRDLVTWTVM------------------------IGANKFLL------- 238
              R  FD++ +R++V+WT +                        I  N++ +       
Sbjct: 276 LSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSA 335

Query: 239 -----------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                  +V++G A+I MY K G I +A+ +F  M   N+I+W+
Sbjct: 336 AGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWN 395

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           A+I  + +HG GK+AL +F  M+++   PN +TF+ ++ AC+H  LV+EG   F+ +   
Sbjct: 396 AIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQ 455

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           F + P ++HYTC+V LL R+GRLDEA   + S  +  D   W  LL AC +HK+ D    
Sbjct: 456 FRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRK 515

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            A+ LL+ +P++ G Y+LLSN++A   RW  V +IR LM  R +KK PG +W+E+ N  H
Sbjct: 516 IAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAH 575

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F+  D  HP++  IY  +  L  K+   GY+PD +  LHD+++E KV NL  HSEKLA+
Sbjct: 576 VFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAV 635

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
           A+GL+ TP G  I ++KNLR+C DCH+ IK +S +  RVI+VRDANRFHHF+ G CSC D
Sbjct: 636 AYGLMKTPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGD 695

Query: 576 YW 577
           YW
Sbjct: 696 YW 697



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 141/317 (44%), Gaps = 67/317 (21%)

Query: 59  DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTN-------LIVANKLLYIYALHKALTDA 111
           DP   +      +N+   R +HA +    T+TN       +   N L+ +Y     ++ A
Sbjct: 21  DPIKLLKVAADAKNLKFGRTIHAHL----TITNHNYRDSKVNQLNSLINLYVKCDEVSIA 76

Query: 112 HALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRD 170
             LF+ M  R+ VSWS ++ G+ +  + +  FE F++ + +  +  + Y +   I +C D
Sbjct: 77  RKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSC-D 135

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
            +  V G+  H   LKSGL+  Q+V  AL+ +Y+KC  +  A Q+   +P  D+  + ++
Sbjct: 136 SQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLV 195

Query: 231 IGA-----------------------------------NKFLLDVILG------------ 243
           +                                        L D+ LG            
Sbjct: 196 VNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDI 255

Query: 244 -------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                  +++IDMY KCG++ S R  FDR++ +NV+SW+++IAAY  +   ++AL+LF  
Sbjct: 256 DCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSK 315

Query: 297 MLSSRVLPNRITFVSLL 313
           M    + PN  T   L 
Sbjct: 316 MEIDCIPPNEYTMAVLF 332



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 102/238 (42%), Gaps = 35/238 (14%)

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRV 302
            ++I++Y KC  +  AR++FD M ++NV+SWSA++A Y  +G   +  +LF  M++   +
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 303 LPNRITFVSLLYACSHTGLVE----------EGL-----------RLFSSMWDDFAV--- 338
            PN     + + +C     VE           GL           +L+S   D  A    
Sbjct: 121 FPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQI 180

Query: 339 -----RPDVKHYTCMVDLLGRAGRLDEA---LKLIESMSVEKDEGLWGALLGACRIHKNV 390
                  D+  Y  +V+ L +   + EA   LKLI S  +E +   +  +   C   K++
Sbjct: 181 LYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDI 240

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
            L +     +L+       +  + S++    G+  +V   R    R + + +  WT I
Sbjct: 241 TLGKQVHAQMLKSDIDCDVY--IGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSI 296


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/508 (40%), Positives = 298/508 (58%), Gaps = 28/508 (5%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R V + I   G   +L + N +L +Y    ++ DA  LF+ M ERD  SW++M+ G++K+
Sbjct: 247 RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKM 306

Query: 137 ADFINCFETF-----REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            D+      F     +E     + + +Y         ++ K      + +++ L      
Sbjct: 307 GDYDAARLVFNAMPVKEIAAWNVLISAYE--------QNGKPKEALAIFNELQLSKIAKP 358

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAVIDMY 250
           D+     LV   + C           Q+   DL  W  V I     +L+  L ++++DMY
Sbjct: 359 DE---VTLVSTLSACA----------QLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMY 405

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           AKCGS++ A E+F  + +++V  WSAMIA  G HG+GK A+DLF  M  ++V PN +TF 
Sbjct: 406 AKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFT 465

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           ++L ACSH GLV+EG   F  M   + V P++KHY CMVD+LGRAG L+EA++LI  MS 
Sbjct: 466 NVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMST 525

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
                +WGALLGAC +H NV+L E+A+  LL+ +P+N G  VLLSN+YA  GRW+ V+++
Sbjct: 526 TPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSEL 585

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R LM    LKK PG + IE    +H+F VGD+THP S  IY  L  ++ KL+  GY P+ 
Sbjct: 586 RKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNK 645

Query: 491 NFELHDVDE-EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
           +  L  ++E ++K   L  HSEKLAIAFGL+       IR++KNLR+CGDCH+F K VS 
Sbjct: 646 SHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSR 705

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  R I++RD  RFHHF  G CSC DYW
Sbjct: 706 VYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 164/315 (52%), Gaps = 29/315 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH   +      +L + N L+  Y     L+ A  LF G+  +D VSW+ M+  F++   
Sbjct: 148 VHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNC 207

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
             +  E F +  R  +  +S T+  V+ AC  + D+  GR +   + + G+ +D  +C A
Sbjct: 208 PEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNA 267

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           ++DMY KC  +DDA++LFD+MP RD+ +WT+M                +D YAK G  D+
Sbjct: 268 MLDMYTKCGSVDDAQKLFDEMPERDVFSWTIM----------------LDGYAKMGDYDA 311

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACS 317
           AR +F+ M  K + +W+ +I+AY  +G+ K+AL +F  + LS    P+ +T VS L AC+
Sbjct: 312 ARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACA 371

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTC-----MVDLLGRAGRLDEALKLIESMSVEK 372
             G ++ G       W    ++ +     C     +VD+  + G L++AL++  S+  E+
Sbjct: 372 QLGAIDLG------GWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ER 424

Query: 373 DEGLWGALLGACRIH 387
           D  +W A++    +H
Sbjct: 425 DVYVWSAMIAGLGMH 439



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 167/382 (43%), Gaps = 57/382 (14%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKER 121
           +S++  C +  Q+++VHA+++  G   +   A+KL    AL     L  A  LF+ + + 
Sbjct: 29  LSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQP 88

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +  +W+ ++  ++  +D    F  F + + +C    + +T PFVI+A  + K   +G  +
Sbjct: 89  NLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAV 148

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H + +K    +D ++  +LV  Y  C  +  A +LF  +  +D+V+W  MI A       
Sbjct: 149 HGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISA------- 201

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                    +A+    + A E+F +M ++N                              
Sbjct: 202 ---------FAQGNCPEDALELFLKMEREN------------------------------ 222

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V+PN +T V +L AC+    +E G R   S  +   ++ D+     M+D+  + G +D+
Sbjct: 223 -VMPNSVTMVGVLSACAKKLDLEFG-RWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDD 280

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYA 419
           A KL + M  E+D   W  +L       + D    AA+ +    P +    + +L + Y 
Sbjct: 281 AQKLFDEMP-ERDVFSWTIMLDGYAKMGDYD----AARLVFNAMPVKEIAAWNVLISAYE 335

Query: 420 NAGRWQDVAKIRDLMTRRRLKK 441
             G+ ++   I + +   ++ K
Sbjct: 336 QNGKPKEALAIFNELQLSKIAK 357



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 109/259 (42%), Gaps = 26/259 (10%)

Query: 34  GHEQNPMNPRVPMQMGPDCQFTRSVDPK--FFISSLLSCRNIFQIR---QVHAQIVAGGT 88
            +EQN   P+  + +  + Q ++   P     +S+L +C  +  I     +H  I   G 
Sbjct: 333 AYEQNG-KPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI 391

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + N  + + L+ +YA   +L  A  +F  ++ERD   WS M+ G           + F E
Sbjct: 392 VLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFE 451

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRL-IHDIVLKSGLDIDQFVCAALVDMYAKCK 207
                ++ +S T   V+ AC     +  GR+  H++    G+  +    A +VD+  +  
Sbjct: 452 MQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAG 511

Query: 208 VIDDARQLFDQMPTRDLVT-WTVMIGANKFLLDVILGTAVID------------------ 248
            +++A +L ++M T    + W  ++GA    ++V LG    D                  
Sbjct: 512 FLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSN 571

Query: 249 MYAKCGSIDSAREIFDRMR 267
           +YAK G  +   E+   MR
Sbjct: 572 IYAKTGRWEKVSELRKLMR 590


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 295/511 (57%), Gaps = 59/511 (11%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF----- 133
           +H  +V  G   +  V N L+ +Y+    +  A  +F  M++RD V+W+ M+ G+     
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486

Query: 134 -SKVADFINCFETFREFI-----RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
                  ++  +     +     R  ++ +S TL  ++ +C     +  G+ IH   +K 
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK- 545

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247
                                                         N    DV +G+A++
Sbjct: 546 ----------------------------------------------NNLATDVAVGSALV 559

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG +  +R++FD++ QKNVI+W+ +I AYG HG G++A+DL  MM+   V PN +
Sbjct: 560 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+S+  ACSH+G+V+EGLR+F  M  D+ V P   HY C+VDLLGRAGR+ EA +L+  
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Query: 368 MSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           M  + ++ G W +LLGA RIH N+++ E+AA++L++ +P    HYVLL+N+Y++AG W  
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
             ++R  M  + ++K PG +WIE  +++H+F  GDS+HPQSE++   L TL E++   GY
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 799

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           +PDT+  LH+V+E+ K   L  HSEKLAIAFG++ T  GT IR+ KNLRVC DCH   K 
Sbjct: 800 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKF 859

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S I  R II+RD  RFH F+ G CSC DYW
Sbjct: 860 ISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 63/365 (17%)

Query: 77  RQVHAQIVA-GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +Q+HA +   G  + ++ VAN L+ +Y         + +F+ + ER+ VSW+ ++     
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 176

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRD---RKDIVMGRLIHDIVLKSGLDID 192
              +    E FR  +   ++  S+TL  V+ AC +    + ++MG+ +H   L+ G +++
Sbjct: 177 FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELN 235

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI-------- 241
            F+   LV MY K   +  ++ L      RDLVTW  ++ +   N+ LL+ +        
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 242 --------------------------------------------LGTAVIDMYAKCGSID 257
                                                       +G+A++DMY  C  + 
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYAC 316
           S R +FD M  + +  W+AMIA Y  +   K+AL LF  M  S+ +L N  T   ++ AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
             +G       +   +      R      T M D+  R G++D A+++   M  ++D   
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVT 473

Query: 377 WGALL 381
           W  ++
Sbjct: 474 WNTMI 478



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 84/424 (19%)

Query: 52  CQFTRSVDPKFF--ISSLLSCRNI------FQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
           C    +V+P  F  +S + +C N+         +QVHA  +  G L + I+ N L+ +Y 
Sbjct: 189 CMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYG 247

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
               L  +  L      RD V+W+ ++    +    +   E  RE +  G++ D +T+  
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
           V+ AC   + +  G+ +H   LK+G LD + FV +ALVDMY  CK +   R++FD M  R
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367

Query: 223 DLVTWTVMIGA------NKFLLDVILG--------------TAVIDMYAKCGSIDSAREI 262
            +  W  MI        +K  L + +G                V+    + G+      I
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 263 --------FDR---------------------------MRQKNVISWSAMIAAYGYHGQG 287
                    DR                           M  +++++W+ MI  Y +    
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 288 KKALDLFPMML---------SSRV--LPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDD 335
           + AL L   M          +SRV   PN IT +++L +C+    + +G  + + ++ ++
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN----VD 391
            A   DV   + +VD+  + G L  + K+ + +  +K+   W  ++ A  +H N    +D
Sbjct: 548 LAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAID 604

Query: 392 LAEM 395
           L  M
Sbjct: 605 LLRM 608



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 51/261 (19%)

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           T+ + I  G++ D+Y  P +++A  D +D+ +G+ IH  V K G  +D            
Sbjct: 84  TYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDS----------- 132

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                              V +   ++++Y KCG   +  ++FD
Sbjct: 133 -----------------------------------VTVANTLVNLYRKCGDFGAVYKVFD 157

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           R+ ++N +SW+++I++     + + AL+ F  ML   V P+  T VS++ ACS+  +  E
Sbjct: 158 RISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PE 216

Query: 325 GLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           GL +   +      + ++  +    +V + G+ G+L  +  L+ S    +D   W  +L 
Sbjct: 217 GLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLS 275

Query: 383 A-CRIHKNVDLAEMAAKSLLE 402
           + C+  + ++  E   + +LE
Sbjct: 276 SLCQNEQLLEALEYLREMVLE 296



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HA  +     T++ V + L+ +YA    L  +  +F+ + +++ ++W+V++  +   
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 596

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFV 195
            +     +  R  +  G++ +  T   V  AC     +  G R+ + +    G++     
Sbjct: 597 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 656

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLV---TWTVMIGANKFLLDVILG--------- 243
            A +VD+  +   I +A QL + MP RD      W+ ++GA++   ++ +G         
Sbjct: 657 YACVVDLLGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQ 715

Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                      + ++Y+  G  D A E+   M+++ V
Sbjct: 716 LEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 311/555 (56%), Gaps = 57/555 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA I     L +  VA  LL +YA   ++  A  +F+ M  R+ VSW+ M+ GF K 
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKN 279

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             +      FRE +  G   D  ++  V+ AC    ++  G+ +H  ++K GL    +V 
Sbjct: 280 KLYGRAIGVFREVLSLGP--DQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVK 337

Query: 197 AALVDMYAKCKVIDDARQL------------------------FDQMPTR---------- 222
            +LVDMY KC + +DA +L                        F+Q  T           
Sbjct: 338 NSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVE 397

Query: 223 -DLVTWTVMIGANKFLLDVILGT-------------------AVIDMYAKCGSIDSAREI 262
            D  +++ +  A+  +  +  GT                   +++ MY KCGS+  A ++
Sbjct: 398 PDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQV 457

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F   ++ NV+ W+AMI  +  HG   +A+ LF  ML+  V+P  ITFVS+L ACSHTG +
Sbjct: 458 FRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKI 517

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G + F+SM +   ++P ++HY CMVDLLGR GRL+EA + IESM  E D  +WGALLG
Sbjct: 518 DDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLG 577

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           AC  H NV++    A+ L + +P NPG+Y+LLSN+Y   G  ++  ++R LM    ++K 
Sbjct: 578 ACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKE 637

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G +WI+V+N+   F+  D +H +++EIY ML  L E ++  GY+ +T F  + V E  +
Sbjct: 638 SGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSV-EGSE 696

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
             +L+ HSEKLA+AFGL+  P G+ +RI KNLR CGDCH+ +K  S I +R IIVRD NR
Sbjct: 697 EQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINR 756

Query: 563 FHHFEGGACSCRDYW 577
           FH F  G+CSC DYW
Sbjct: 757 FHRFTNGSCSCMDYW 771



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 184/471 (39%), Gaps = 89/471 (18%)

Query: 53  QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           QF+   D K  +++    +++    Q+H+Q+V      +L   N LL +YA   ++    
Sbjct: 93  QFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTL 152

Query: 113 ALFNGMKERDS--VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
            LFN      +  V+W+ ++   S+          F      G+  + +T   ++ AC  
Sbjct: 153 LLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAH 212

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+ IH ++ K     D FV  AL+DMYAKC  +  A  +FD+MP R+LV+W  M
Sbjct: 213 AALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSM 272

Query: 231 I----------------------GANKFLLDVILG------------------------- 243
           I                      G ++  +  +L                          
Sbjct: 273 IVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVG 332

Query: 244 -----TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                 +++DMY KCG  + A ++F     ++V++W+ MI         ++A   F  M+
Sbjct: 333 LVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMI 392

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-------------------------SMW 333
              V P+  ++ SL +A +    + +G  + S                         SM 
Sbjct: 393 REGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSML 452

Query: 334 DDFAVRPDVKH-----YTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACR 385
           D + V  + K      +T M+ +  + G  +EA+KL E M    V  +   + ++L AC 
Sbjct: 453 DAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACS 512

Query: 386 IHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDVAKIRDLM 434
               +D       S+       PG  HY  + ++    GR ++  +  + M
Sbjct: 513 HTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESM 563


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 295/511 (57%), Gaps = 59/511 (11%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF----- 133
           +H  +V  G   +  V N L+ +Y+    +  A  +F  M++RD V+W+ M+ G+     
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486

Query: 134 -SKVADFINCFETFREFI-----RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
                  ++  +     +     R  ++ +S TL  ++ +C     +  G+ IH   +K 
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK- 545

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247
                                                         N    DV +G+A++
Sbjct: 546 ----------------------------------------------NNLATDVAVGSALV 559

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG +  +R++FD++ QKNVI+W+ +I AYG HG G++A+DL  MM+   V PN +
Sbjct: 560 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+S+  ACSH+G+V+EGLR+F  M  D+ V P   HY C+VDLLGRAGR+ EA +L+  
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679

Query: 368 MSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           M  + ++ G W +LLGA RIH N+++ E+AA++L++ +P    HYVLL+N+Y++AG W  
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
             ++R  M  + ++K PG +WIE  +++H+F  GDS+HPQSE++   L TL E++   GY
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 799

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           +PDT+  LH+V+E+ K   L  HSEKLAIAFG++ T  GT IR+ KNLRVC DCH   K 
Sbjct: 800 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKF 859

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S I  R II+RD  RFH F+ G CSC DYW
Sbjct: 860 ISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 63/365 (17%)

Query: 77  RQVHAQIVA-GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +Q+HA +   G  + ++ VAN L+ +Y         + +F+ + ER+ VSW+ ++     
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 176

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRD---RKDIVMGRLIHDIVLKSGLDID 192
              +    E FR  +   ++  S+TL  V+ AC +    + ++MG+ +H   L+ G +++
Sbjct: 177 FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELN 235

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI-------- 241
            F+   LV MY K   +  ++ L      RDLVTW  ++ +   N+ LL+ +        
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 242 --------------------------------------------LGTAVIDMYAKCGSID 257
                                                       +G+A++DMY  C  + 
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYAC 316
           S R +FD M  + +  W+AMIA Y  +   K+AL LF  M  S+ +L N  T   ++ AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
             +G       +   +      R      T M D+  R G++D A+++   M  ++D   
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVT 473

Query: 377 WGALL 381
           W  ++
Sbjct: 474 WNTMI 478



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 84/424 (19%)

Query: 52  CQFTRSVDPKFF--ISSLLSCRNI------FQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
           C    +V+P  F  +S + +C N+         +QVHA  +  G L + I+ N L+ +Y 
Sbjct: 189 CMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYG 247

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
               L  +  L      RD V+W+ ++    +    +   E  RE +  G++ D +T+  
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
           V+ AC   + +  G+ +H   LK+G LD + FV +ALVDMY  CK +   R++FD M  R
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367

Query: 223 DLVTWTVMIGA------NKFLLDVILG--------------TAVIDMYAKCGSIDSAREI 262
            +  W  MI        +K  L + +G                V+    + G+      I
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 263 --------FDR---------------------------MRQKNVISWSAMIAAYGYHGQG 287
                    DR                           M  +++++W+ MI  Y +    
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 288 KKALDLFPMML---------SSRVL--PNRITFVSLLYACSHTGLVEEGLRLFS-SMWDD 335
           + AL L   M          +SRV   PN IT +++L +C+    + +G  + + ++ ++
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN----VD 391
            A   DV   + +VD+  + G L  + K+ + +  +K+   W  ++ A  +H N    +D
Sbjct: 548 LAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAID 604

Query: 392 LAEM 395
           L  M
Sbjct: 605 LLRM 608



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 51/261 (19%)

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           T+ + I  G++ D+Y  P +++A  D +D+ +G+ IH  V K G  +D            
Sbjct: 84  TYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDS----------- 132

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                              V +   ++++Y KCG   +  ++FD
Sbjct: 133 -----------------------------------VTVANTLVNLYRKCGDFGAVYKVFD 157

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           R+ ++N +SW+++I++     + + AL+ F  ML   V P+  T VS++ ACS+  +  E
Sbjct: 158 RISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PE 216

Query: 325 GLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           GL +   +      + ++  +    +V + G+ G+L  +  L+ S    +D   W  +L 
Sbjct: 217 GLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLS 275

Query: 383 A-CRIHKNVDLAEMAAKSLLE 402
           + C+  + ++  E   + +LE
Sbjct: 276 SLCQNEQLLEALEYLREMVLE 296



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HA  +     T++ V + L+ +YA    L  +  +F+ + +++ ++W+V++  +   
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 596

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFV 195
            +     +  R  +  G++ +  T   V  AC     +  G R+ + +    G++     
Sbjct: 597 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 656

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLV---TWTVMIGANKFLLDVILG--------- 243
            A +VD+  +   I +A QL + MP RD      W+ ++GA++   ++ +G         
Sbjct: 657 YACVVDLLGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQ 715

Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                      + ++Y+  G  D A E+   M+++ V
Sbjct: 716 LEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 300/555 (54%), Gaps = 54/555 (9%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             Q+H+QI+      N  V + L+ +YA    L  A  +      +D VSW+ M+ G+++ 
Sbjct: 470  EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 529

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                    TFR+ +  G++ D   L   + AC   + +  G+ IH     SG   D    
Sbjct: 530  NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 589

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVIL-------- 242
             ALV +Y++C  I+++   F+Q    D + W  ++      G N+  L V +        
Sbjct: 590  NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 649

Query: 243  ------GTAV----------------------------------IDMYAKCGSIDSAREI 262
                  G+AV                                  I MYAKCGSI  A + 
Sbjct: 650  NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 709

Query: 263  FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
            F  +  KN +SW+A+I AY  HG G +ALD F  M+ S V PN +T V +L ACSH GLV
Sbjct: 710  FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 769

Query: 323  EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            ++G+  F SM  ++ + P  +HY C+VD+L RAG L  A + I+ M ++ D  +W  LL 
Sbjct: 770  DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 829

Query: 383  ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            AC +HKN+++ E AA  LLE +P++   YVLLSN+YA + +W      R  M  + +KK 
Sbjct: 830  ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 889

Query: 443  PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            PG +WIEV+N IH F VGD  HP ++EI+     L+++    GY+ D    L+++  E K
Sbjct: 890  PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQK 949

Query: 503  VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
               ++ HSEKLAI+FGL++ P    I +MKNLRVC DCH++IK VS ++ R IIVRDA R
Sbjct: 950  DPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYR 1009

Query: 563  FHHFEGGACSCRDYW 577
            FHHFEGGACSC+DYW
Sbjct: 1010 FHHFEGGACSCKDYW 1024



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 166/386 (43%), Gaps = 59/386 (15%)

Query: 59  DPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D     S +++C     +F+ +Q+HA     G  +N  +   LL +YA    +  A   F
Sbjct: 348 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 407

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
              +  + V W+VM+  +  + D  N F  FR+     +  + YT P +++ C    D+ 
Sbjct: 408 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 467

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GAN 234
           +G  IH  ++K+   ++ +VC+ L+DMYAK   +D A  +  +   +D+V+WT MI G  
Sbjct: 468 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 527

Query: 235 KFLLD-------------------VILGTAV----------------------------- 246
           ++  D                   V L  AV                             
Sbjct: 528 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 587

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                + +Y++CG I+ +   F++    + I+W+A+++ +   G  ++AL +F  M    
Sbjct: 588 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 647

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  N  TF S + A S T  +++G ++ + +        + +    ++ +  + G + +A
Sbjct: 648 IDNNNFTFGSAVKAASETANMKQGKQVHAVI-TKTGYDSETEVCNALISMYAKCGSISDA 706

Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
            K    +S  K+E  W A++ A   H
Sbjct: 707 EKQFLEVST-KNEVSWNAIINAYSKH 731



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 163/382 (42%), Gaps = 38/382 (9%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           + Q+HA+I+  G   + +V N L+ +Y+ +  +  A  +F+G++ +D  SW  M+ G SK
Sbjct: 166 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 225

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                     F +    G+    Y    V+ AC+  + + +G  +H +VLK G   D +V
Sbjct: 226 NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 285

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
           C ALV +Y     +  A  +F  M  RD VT+  +I                   ++CG 
Sbjct: 286 CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING----------------LSQCGY 329

Query: 256 IDSAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
            + A E+F RM     + +  + ++++ A    G   +   L           N     +
Sbjct: 330 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 389

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE---ALKLIESM 368
           LL   +    +E  L        D+ +  +V++      +L   G LD+   + ++   M
Sbjct: 390 LLNLYAKCADIETAL--------DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 441

Query: 369 SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRW 424
            +E+   ++  + ++L  C    +++L E     +++   Q N     +L ++YA  G+ 
Sbjct: 442 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL 501

Query: 425 QDVAKIRDLMTRRRLKKIPGWT 446
            D A   D++ R   K +  WT
Sbjct: 502 -DTA--WDILIRFAGKDVVSWT 520



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 139/347 (40%), Gaps = 96/347 (27%)

Query: 133 FSKVADFINCFETFRE-----FIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLK 186
           F+ ++ +I+  E+F+E         G++ +  TL +++  C +    +  GR +H  +LK
Sbjct: 14  FAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILK 73

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDVILG- 243
            GLD +  +   L D Y     +  A ++FD+MP R + TW  MI   A++ L+  + G 
Sbjct: 74  LGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGL 133

Query: 244 ----------------------------------------------------TAVIDMYA 251
                                                                 +ID+Y+
Sbjct: 134 FVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYS 193

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           + G +D AR +FD +R K+  SW AMI+    +    +A+ LF  M    ++P    F S
Sbjct: 194 RNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 253

Query: 312 LLYACSHTGLVEEGLRL--------FSS-----------------------MWDDFAVRP 340
           +L AC     +E G +L        FSS                       ++ + + R 
Sbjct: 254 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR- 312

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           D   Y  +++ L + G  ++A++L + M    +E D     +L+ AC
Sbjct: 313 DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 359


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/622 (34%), Positives = 328/622 (52%), Gaps = 67/622 (10%)

Query: 14  SAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNI 73
           +A L F  S  + + A E H   Q+  +P +P         +R       IS + SC   
Sbjct: 31  TASLPFLDSEESPSTASENHRRLQHQTHP-LPK--------SRDESENQLISLIKSCSKK 81

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDSVSWSVMVG 131
             + Q+HA I+    + N  ++ + L   AL  +  +  +  +F+ + +     ++VM+ 
Sbjct: 82  THLLQIHAHIIRTSLIQNHFISLQFLSRAALSPSRDMGYSSQVFSQIMKPSGSQYNVMIR 141

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            +S        F  +RE  R G+  +  +  FV+++C     ++ G  IH  +L+ G   
Sbjct: 142 AYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQS 201

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMP-------------------TRD--------- 223
           D  +   L+D+Y+ C   ++A ++FD++P                   TRD         
Sbjct: 202 DNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQ 261

Query: 224 ---------------LVTWTVMIGANKFLLDV-------------ILGTAVIDMYAKCGS 255
                          L+     +GA +F   V              L  ++I MY++CG 
Sbjct: 262 STADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGR 321

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           ++ A  IF RM ++NV+SWSAMI+ +  HG G++A++ F  M    V P+  T   +L A
Sbjct: 322 LEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSA 381

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH GLV++GL  F  M   F + P++ HY CMVDLLGRAG LD+A +LI SM ++ D  
Sbjct: 382 CSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQAYQLIMSMVIKPDST 441

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
           LW  LLGACRIH++  L E     L+E + Q  G YVLL N+Y++ G W  V  +R  M 
Sbjct: 442 LWRTLLGACRIHRHATLGERVIGHLIELKAQEAGDYVLLLNIYSSVGNWDKVTDLRKFMK 501

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
            + ++  PG + IE++ K+H+F V D  HP+++EIY ML  + ++L++AGY+ + + ELH
Sbjct: 502 EKGIQTSPGCSTIELKGKVHEFVVDDILHPRTDEIYEMLDEIGKQLKIAGYVAELSSELH 561

Query: 496 DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           ++  E K   L  HSEKLAIAFG++ATP GT IR+ KNLR+C DCH+F K +S    R +
Sbjct: 562 NLGAEEKGNRLSYHSEKLAIAFGVLATPPGTTIRVAKNLRICVDCHNFAKVLSGAYNREV 621

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           ++RD  RFHHF  G CSC  YW
Sbjct: 622 VIRDRTRFHHFREGQCSCNGYW 643


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/511 (38%), Positives = 295/511 (57%), Gaps = 59/511 (11%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF----- 133
           +H  +V  G   +  V N L+ +Y+    +  A  +F  M++RD V+W+ M+ G+     
Sbjct: 340 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 399

Query: 134 -SKVADFINCFETFREFI-----RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
                  ++  +     +     R  ++ +S TL  ++ +C     +  G+ IH   +K 
Sbjct: 400 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK- 458

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247
                                                         N    DV +G+A++
Sbjct: 459 ----------------------------------------------NNLATDVAVGSALV 472

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG +  +R++FD++ QKNVI+W+ +I AYG HG G++A+DL  MM+   V PN +
Sbjct: 473 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 532

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+S+  ACSH+G+V+EGLR+F  M  D+ V P   HY C+VDLLGRAGR+ EA +L+  
Sbjct: 533 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 592

Query: 368 MSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           M  + ++ G W +LLGA RIH N+++ E+AA++L++ +P    HYVLL+N+Y++AG W  
Sbjct: 593 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 652

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
             ++R  M  + ++K PG +WIE  +++H+F  GDS+HPQSE++   L TL E++   GY
Sbjct: 653 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 712

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           +PDT+  LH+V+E+ K   L  HSEKLAIAFG++ T  GT IR+ KNLRVC DCH   K 
Sbjct: 713 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKF 772

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S I  R II+RD  RFH F+ G CSC DYW
Sbjct: 773 ISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 63/365 (17%)

Query: 77  RQVHAQIVA-GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +Q+HA +   G  + ++ VAN L+ +Y         + +F+ + ER+ VSW+ ++     
Sbjct: 30  KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 89

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRD---RKDIVMGRLIHDIVLKSGLDID 192
              +    E FR  +   ++  S+TL  V+ AC +    + ++MG+ +H   L+ G +++
Sbjct: 90  FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELN 148

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI-------- 241
            F+   LV MY K   +  ++ L      RDLVTW  ++ +   N+ LL+ +        
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 242 --------------------------------------------LGTAVIDMYAKCGSID 257
                                                       +G+A++DMY  C  + 
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 268

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYAC 316
           S R +FD M  + +  W+AMIA Y  +   K+AL LF  M  S+ +L N  T   ++ AC
Sbjct: 269 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 328

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
             +G       +   +      R      T M D+  R G++D A+++   M  ++D   
Sbjct: 329 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVT 386

Query: 377 WGALL 381
           W  ++
Sbjct: 387 WNTMI 391



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 84/424 (19%)

Query: 52  CQFTRSVDPKFF--ISSLLSCRNI------FQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
           C    +V+P  F  +S + +C N+         +QVHA  +  G L + I+ N L+ +Y 
Sbjct: 102 CMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYG 160

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
               L  +  L      RD V+W+ ++    +    +   E  RE +  G++ D +T+  
Sbjct: 161 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 220

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
           V+ AC   + +  G+ +H   LK+G LD + FV +ALVDMY  CK +   R++FD M  R
Sbjct: 221 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 280

Query: 223 DLVTWTVMIGA------NKFLLDVILG--------------TAVIDMYAKCGSIDSAREI 262
            +  W  MI        +K  L + +G                V+    + G+      I
Sbjct: 281 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 340

Query: 263 --------FDRMR---------------------------QKNVISWSAMIAAYGYHGQG 287
                    DR R                            +++++W+ MI  Y +    
Sbjct: 341 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 400

Query: 288 KKALDLFPMML---------SSRV--LPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDD 335
           + AL L   M          +SRV   PN IT +++L +C+    + +G  + + ++ ++
Sbjct: 401 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 460

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN----VD 391
            A   DV   + +VD+  + G L  + K+ + +  +K+   W  ++ A  +H N    +D
Sbjct: 461 LAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAID 517

Query: 392 LAEM 395
           L  M
Sbjct: 518 LLRM 521



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 51/257 (19%)

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            I  G++ D+Y  P +++A  D +D+ +G+ IH  V K G  +D                
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDS--------------- 45

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                          V +   ++++Y KCG   +  ++FDR+ +
Sbjct: 46  -------------------------------VTVANTLVNLYRKCGDFGAVYKVFDRISE 74

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +N +SW+++I++     + + AL+ F  ML   V P+  T VS++ ACS+  +  EGL +
Sbjct: 75  RNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMM 133

Query: 329 FSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA-CR 385
              +      + ++  +    +V + G+ G+L  +  L+ S    +D   W  +L + C+
Sbjct: 134 GKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLSSLCQ 192

Query: 386 IHKNVDLAEMAAKSLLE 402
             + ++  E   + +LE
Sbjct: 193 NEQLLEALEYLREMVLE 209



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 97/217 (44%), Gaps = 23/217 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HA  +     T++ V + L+ +YA    L  +  +F+ + +++ ++W+V++  +   
Sbjct: 450 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 509

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFV 195
            +     +  R  +  G++ +  T   V  AC     +  G R+ + +    G++     
Sbjct: 510 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 569

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLV---TWTVMIGANKFLLDVILG--------- 243
            A +VD+  +   I +A QL + MP RD      W+ ++GA++   ++ +G         
Sbjct: 570 YACVVDLLGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQ 628

Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                      + ++Y+  G  D A E+   M+++ V
Sbjct: 629 LEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 665


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 313/598 (52%), Gaps = 76/598 (12%)

Query: 56  RSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIY---------- 102
           RS  P    ++L SC  +        +HA  +  G   +   AN LL +Y          
Sbjct: 46  RSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDS 105

Query: 103 ---------ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
                        A      +F+ M ERD VSW+ +V G ++           R+  R G
Sbjct: 106 TGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREG 165

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC------- 206
            + DS+TL  V+    +  D+  G  +H    ++G D D FV ++L+DMYA C       
Sbjct: 166 FRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSV 225

Query: 207 KVID------------------------DARQLFDQMPTRDL----VTWTVMIG------ 232
           KV D                        +A  +F +M    +    VT++ +I       
Sbjct: 226 KVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLA 285

Query: 233 -------------ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                           F  +V + +++IDMY KCG I  A  IFD+M   +V+SW+AMI 
Sbjct: 286 SLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIM 345

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y  HG  ++AL LF  M      PN ITF+++L ACSH GLV++G + F SM + + + 
Sbjct: 346 GYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIV 405

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++H+  + D LGRAG LDEA   I  M ++    +W  LL ACR+HKN  LAE  AK 
Sbjct: 406 PTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKK 465

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           ++E +P++ G +V+LSN+Y+ +GRW + A +R+ M ++ +KK P  +WIEV++K+H F  
Sbjct: 466 IMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVA 525

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
            D +HP  + I   L   SE++   G++P+T     D++EE K   L  HSEKLAI FG+
Sbjct: 526 HDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGI 585

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+TP GT IR+MKNLRVC DCH+  K +S +  R I+VRDANRFHHF+ G CSC D+W
Sbjct: 586 ISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 318/581 (54%), Gaps = 75/581 (12%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R +   + +HA IV  G +    +AN L+ +Y    A + A  +F+ M  RD ++W+ ++
Sbjct: 85  RTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVL 144

Query: 131 GGFSKVA-DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
              ++                  G++ D +    +++AC +   I  GR +H   + S  
Sbjct: 145 TALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEY 204

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQ------------------------------- 218
             D+ V ++LVDMYAKC +++ A+ +FD                                
Sbjct: 205 ANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 264

Query: 219 MPTRDLVTWTVMI--------GANKF------------LLDVIL---------------- 242
           +P ++L +WT +I        G   F            +LD ++                
Sbjct: 265 LPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIA 324

Query: 243 -----GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
                G A+IDMYAKC  + +A++IF RMR ++V+SW+++I     HGQ +KAL L+  M
Sbjct: 325 GRQVHGNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDM 384

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           +S  V PN +TFV L+YACSH G VE+G  LF SM  D+ +RP ++HYTC++DLLGR+G 
Sbjct: 385 VSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGL 444

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER-QPQNPGHYVLLSN 416
           LDEA  LI +M    DE  W ALL AC+      +    A  L+   + ++P  Y+LLSN
Sbjct: 445 LDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSN 504

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA+A  W  V++ R  +    ++K PG + +EV  +   F  G+++HP  E+I+R+L  
Sbjct: 505 IYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKK 564

Query: 477 LSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
           L E++ +  GY+PDT++ LHD+DE+ K   L+ HSE+ A+A+GL+    GT IRI+KNLR
Sbjct: 565 LEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLR 624

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           VCGDCH  +KH+S IT R IIVRDA R+HHF+GG CSC D+
Sbjct: 625 VCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 58  VDPKFFISSLLSCRNI---FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +DP    S + +C N+      RQVH               N L+ +YA    +  A  +
Sbjct: 304 LDPLVLSSIVGACANLAASIAGRQVHG--------------NALIDMYAKCSDVIAAKDI 349

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M+ RD VSW+ ++ G ++          + + +  G++ +  T   +I AC     +
Sbjct: 350 FSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFV 409

Query: 175 VMGR-LIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVM 230
             GR L   +    G+   +  + C  L+D+  +  ++D+A  L   MP   D  TW  +
Sbjct: 410 EKGRELFQSMTKDYGIRPSLQHYTC--LLDLLGRSGLLDEAENLIHTMPFPPDEPTWAAL 467

Query: 231 IGANK 235
           + A K
Sbjct: 468 LSACK 472


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/531 (39%), Positives = 298/531 (56%), Gaps = 55/531 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
            +++   LL +YA   +L  A  +F+ M  R+ V+WS ++GGF   +     F  F+  +
Sbjct: 157 GVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAML 216

Query: 151 RCGMQ-LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
             G+  L   ++   +RAC     + MG  +H ++ KSG+  D     +L+ MYAK  +I
Sbjct: 217 AQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 210 DDARQLFDQMPTR-----------------------------------DLVTWTVMIGAN 234
           D A  LFD+M  +                                   D  T   +I A 
Sbjct: 277 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  +  G                    A+IDMYAKCG ID +R++F+ M  ++++SW+
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN 396

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
            MIA YG HG GK+A  LF  M +    P+ +TF+ LL ACSH+GLV EG   F  M   
Sbjct: 397 TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHG 456

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           + + P ++HY CMVDLL R G LDEA + I+SM +  D  +W ALLGACR++KN+DL + 
Sbjct: 457 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            ++ + E  P+  G++VLLSN+Y+ AGR+ + A++R +   +  KK PG +WIE+   +H
Sbjct: 517 VSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLH 576

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
            F  GD +HPQS EIYR L  +   ++  GY PDT+F L D++EE K   L  HSEKLAI
Sbjct: 577 AFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAI 636

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
           A+G+++  E   I + KNLRVCGDCH+ IKH+S + RR IIVRDANRFHHF
Sbjct: 637 AYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 161/381 (42%), Gaps = 75/381 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H   +  G   +L V+  LL +Y     L DA  +F  M  RD V+W+ M+ G++  
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 137 ADFINCFETFREFIRCGMQL-----DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
             +          +   MQ+     ++ TL  ++     +  +  G  +H   +++ L  
Sbjct: 90  GMY---HHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHP 146

Query: 192 DQ----------FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           ++           +  AL+DMYAKC  +  AR++FD MP R+ VTW+ +IG         
Sbjct: 147 NRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMT 206

Query: 234 NKFLL-----------------------------------------------DVILGTAV 246
             FLL                                               D+  G ++
Sbjct: 207 QAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSL 266

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           + MYAK G ID A  +FD M  K+ +S+SA+++ Y  +G+ ++A  +F  M +  V P+ 
Sbjct: 267 LSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDA 326

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
            T VSL+ ACSH   ++ G     S+     +  +      ++D+  + GR+D + ++  
Sbjct: 327 ATMVSLIPACSHLAALQHGRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFN 385

Query: 367 SMSVEKDEGLWGALLGACRIH 387
            M   +D   W  ++    IH
Sbjct: 386 MMP-SRDIVSWNTMIAGYGIH 405



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 103/258 (39%), Gaps = 59/258 (22%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           ++YT PF ++AC    D   GR IH   + +GL  D FV  AL+DMY KC  + DA  +F
Sbjct: 9   NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
             MP RDLV W  M                                              
Sbjct: 69  ATMPARDLVAWNAM---------------------------------------------- 82

Query: 277 MIAAYGYHGQGKKAL-DLFPM-MLSSRVLPNRITFVSLLYACSHTGLVEEGLR------- 327
            +A Y +HG    A+  L  M M   R+ PN  T V+LL   +  G + +G         
Sbjct: 83  -LAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIR 141

Query: 328 --LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
             L  +      +   V   T ++D+  + G L  A ++ ++M   ++E  W AL+G   
Sbjct: 142 ACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA-RNEVTWSALIGGFV 200

Query: 386 IHKNVDLAEMAAKSLLER 403
           +   +  A +  K++L +
Sbjct: 201 LCSRMTQAFLLFKAMLAQ 218


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 317/560 (56%), Gaps = 57/560 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKERDSVSWSVMVGG 132
           + +Q HA+I+  G   +   A+ L+   AL    ++  A ++F  M E  S  ++ M+ G
Sbjct: 3   EFKQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRG 62

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
             K  +      T++E    G++ D++T P +++AC     +  G  +H  +LK GL+ D
Sbjct: 63  HVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLEND 122

Query: 193 QFVCAALVDMYAK-------CKVID------------------------DARQLFDQMPT 221
            FV  +L+ MY K       C V +                        D  +L   M  
Sbjct: 123 VFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSN 182

Query: 222 R-----------DLVTWTVMIGA-------NKFLL------DVILGTAVIDMYAKCGSID 257
                        +++    +GA       + FLL      +VI+ T++I+MY KCG + 
Sbjct: 183 EGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLY 242

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
               +F +M +KN +S+S MI+    HG G++ L +F  ML   + P+ I +V +L ACS
Sbjct: 243 KGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACS 302

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GLV+EGL+ F+ M  +  + P ++HY CMVDL+GRAG++DEAL+LI+SM +E ++ LW
Sbjct: 303 HAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLW 362

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
            +LL A ++H N+   E+AAK L +   Q    YV+LSN+YA A RW+DVA+ R  M  +
Sbjct: 363 RSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSK 422

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            L + PG++ +EV+ K+H+F   D+ HPQSE +Y ML  +  +L+  GY PDT   L DV
Sbjct: 423 GLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDV 482

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           DEE K   L  HS+KLAIA+ LI T +G+ +RI++NLR+C DCH++ K +S I  R I V
Sbjct: 483 DEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITV 542

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD +RFHHF+ GACSCRDYW
Sbjct: 543 RDRHRFHHFKDGACSCRDYW 562



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 9/185 (4%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            +    +S L +C ++  +   R VH  ++   +  N+IV   L+ +Y     L     L
Sbjct: 188 AEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCL 247

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M +++ +S+SVM+ G +           F E +  G++ D      V+ AC     +
Sbjct: 248 FQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLV 307

Query: 175 VMG-RLIHDIVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVM 230
             G +  + + L+ G++  I  + C  +VD+  +   ID+A +L   MP   + V W  +
Sbjct: 308 QEGLQCFNRMKLEHGIEPTIQHYGC--MVDLMGRAGKIDEALELIKSMPMEPNDVLWRSL 365

Query: 231 IGANK 235
           + A+K
Sbjct: 366 LSASK 370


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/565 (36%), Positives = 300/565 (53%), Gaps = 56/565 (9%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           S R+    +QVHA  V  G ++++ V      +Y+      +A  +F+ M ER+  +W+ 
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
            +        + +    F EF   G + +  T    + AC     + +GR +H  VL+SG
Sbjct: 180 YLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSG 239

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQM----------------------------- 219
            + D  V   L+D Y KC  +  +  +F  +                             
Sbjct: 240 FEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFL 299

Query: 220 --------PTRDLVTWTVMIGANKFLLDV-----------------ILGTAVIDMYAKCG 254
                   PT  +V+  +   A   +L+V                  +G+A++DMY KCG
Sbjct: 300 RARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCG 359

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSL 312
           SI+ A   FD M ++N+++W+AMI  Y + GQ   A+ LF  M   S RV PN +TFV +
Sbjct: 360 SIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCV 419

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACS  G V  G+ +F SM   + + P  +HY C+VDLLGRAG +++A + I+ M +  
Sbjct: 420 LSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRP 479

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
              +WGALLGA ++    +L ++AA +L E  P + G++VLLSN++A AGRW++   +R 
Sbjct: 480 TVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRK 539

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
            M    +KK  G +WI   N +H F   D++H ++ EI  ML  L  ++E AGYIPDT+F
Sbjct: 540 EMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSF 599

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            L D++EE K   ++ HSEK+A+AFGLI+ P G  IRI KNLR+CGDCHS IK +S I  
Sbjct: 600 ALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVG 659

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R IIVRD N FH F    CSCRDYW
Sbjct: 660 REIIVRDNNLFHRFRDNQCSCRDYW 684



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 53/281 (18%)

Query: 77  RQVHAQIVAGGTLTNLI---VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           R  HAQI+   TL N +   + N L+ +Y+       A  L +    R  V+W+ ++ G 
Sbjct: 26  RAAHAQIIK--TLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGS 83

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            +   F +    F    R  +Q + +T P   +A    +  ++G+ +H + +K+G   D 
Sbjct: 84  VQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDV 143

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           FV  +  DMY+K  + ++AR++FD+MP R++ TW      N +L + +L           
Sbjct: 144 FVGCSAFDMYSKAGLTEEARKMFDEMPERNIATW------NAYLSNSVLE---------- 187

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G  D A   F   R +    W                             PN ITF + L
Sbjct: 188 GRYDDALTAFIEFRHEG---WE----------------------------PNLITFCAFL 216

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
            AC+    +  G +L   +        DV     ++D  G+
Sbjct: 217 NACAGASYLRLGRQLHGFVLQS-GFEADVSVANGLIDFYGK 256



 Score = 43.5 bits (101), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +++MY+K    +SA+ +      ++V++W+A+IA    +G+   AL  F  M    + PN
Sbjct: 48  LVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPN 107

Query: 306 RITFVSLLYACS--HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
             TF     A     + LV + +   +      +   DV       D+  +AG  +EA K
Sbjct: 108 DFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS---DVFVGCSAFDMYSKAGLTEEARK 164

Query: 364 LIESMSVEKDEGLWGALL 381
           + + M  E++   W A L
Sbjct: 165 MFDEMP-ERNIATWNAYL 181


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/485 (39%), Positives = 287/485 (59%), Gaps = 47/485 (9%)

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
           +V N L+ +YA       A  +F  M ++D +SW+ +V G      +      F     C
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLF-----C 57

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
            M++                               G+  DQ V AA++   A+  V++  
Sbjct: 58  EMRI------------------------------MGIHPDQIVIAAVLSACAELTVLEFG 87

Query: 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
           +Q+        L +             + +  +++ MYAKCG I+ A ++FD M  ++VI
Sbjct: 88  KQVHANFLKSGLGS------------SLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVI 135

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           +W+A+I  Y  +G+G+++L+ +  M++S V P+ ITF+ LL+ACSH GLVE G   F SM
Sbjct: 136 TWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSM 195

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
            + + ++P  +HY CM+DLLGR+G+L EA +L+  M+V+ D  +W ALL ACR+H NV+L
Sbjct: 196 EEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVEL 255

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
            E AA +L E +P+N   YVLLSN+Y+ AG+W++ AK R LM  R + K PG +WIE+ +
Sbjct: 256 GERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSS 315

Query: 453 KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
           K+H+F   D +HP++ EIY  +  +   ++ AGY+PD NF LHD+DEE K   L  HSEK
Sbjct: 316 KVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEK 375

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
           LA+AFGL+  P G  IRI KNLR+CGDCH+ +K+VS +  R +I+RD+N FHHF  GACS
Sbjct: 376 LAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACS 435

Query: 573 CRDYW 577
           C DYW
Sbjct: 436 CSDYW 440



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 99/216 (45%), Gaps = 15/216 (6%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +QVHA  +  G  ++L V N L+ +YA    + DA+ +F+ M+ +D ++W+ ++ G+++ 
Sbjct: 88  KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQN 147

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR-LIHDIVLKSGLDIDQFV 195
                    + + I  G++ D  T   ++ AC     +  GR     +    G+      
Sbjct: 148 GRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEH 207

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
            A ++D+  +   + +A++L +QM  + D   W  ++ A +   +V LG           
Sbjct: 208 YACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGE---------- 257

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
              +A  +F+ +  KN + +  +   Y   G+ ++A
Sbjct: 258 --RAANNLFE-LEPKNAVPYVLLSNLYSAAGKWEEA 290


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 308/556 (55%), Gaps = 72/556 (12%)

Query: 54  FTRSVDPK-FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
            T  + P  F +SSLL    +   R VH+  +  G  ++L V+  L+  YA    +  A 
Sbjct: 113 LTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQ 172

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            LF+ M ER  VS++ M+  ++K                                     
Sbjct: 173 KLFDAMPERSLVSYTAMLTCYAK------------------------------------- 195

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVC-AALVDMYAKCKVIDDARQLF--------------- 216
               G L    VL  G+ +   VC   ++D YA+    ++A   F               
Sbjct: 196 ---HGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKV 252

Query: 217 --DQMPTRDLVTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
             +++    +++    +GA             N   ++V +GTA++DMY KCGS++ AR+
Sbjct: 253 RPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARK 312

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M  K+V++W++MI  YG HG   +AL LF  M    V P+ ITFV++L AC+H GL
Sbjct: 313 VFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGL 372

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V +G  +F SM D + + P V+HY CMV+LLGRAGR+ EA  L+ SM VE D  LWG LL
Sbjct: 373 VSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLL 432

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACRIH NV L E  A+ L+     + G YVLLSN+YA A  W  VAK+R +M    ++K
Sbjct: 433 WACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEK 492

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG + IEV+N++H+F  GD  HP+S++IY ML  ++  L+   Y P T+  LHD+ E+ 
Sbjct: 493 EPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQE 552

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K  +L  HSEKLA+AFGLI+T  G  I+I+KNLRVC DCH+ +K +S I+ R II+RD N
Sbjct: 553 KEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRN 612

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHFE G+CSCRDYW
Sbjct: 613 RFHHFENGSCSCRDYW 628



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 155/330 (46%), Gaps = 29/330 (8%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           ++   + Q+HA ++  G   + I+  KL   YA    L  +  LF+     +   W+ ++
Sbjct: 34  KSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHII 93

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
              +    F +    + + +   +Q +++TL  +++AC     +   R +H   +K GL 
Sbjct: 94  NAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLS 149

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250
              +V   LVD YA+   +  A++LFD MP R LV++T M+                  Y
Sbjct: 150 SHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTC----------------Y 193

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-------PMMLSSRVL 303
           AK G +  AR +F+ M  K+V+ W+ MI  Y  HG   +AL  F           + +V 
Sbjct: 194 AKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVR 253

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN IT V++L +C   G +E G +   S  ++  ++ +V+  T +VD+  + G L++A K
Sbjct: 254 PNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARK 312

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           + + M   KD   W +++    IH   D A
Sbjct: 313 VFDVME-GKDVVAWNSMIMGYGIHGFSDEA 341


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 302/552 (54%), Gaps = 53/552 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH   V  G ++   + N LL +Y+        + +F  M++++ VSW+ M+  +++   
Sbjct: 107 VHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGH 166

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F      F+E    G++ D + +   + A    + +  G+ +H   +++G++    V  A
Sbjct: 167 FDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANA 226

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------ANK---------------- 235
           L++MY KC  +++AR +FD +  +D ++W  +IG       AN+                
Sbjct: 227 LMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNA 286

Query: 236 ------------------------------FLLDVILGTAVIDMYAKCGSIDSAREIFDR 265
                                         +L D  +  A++DMY KCG++  AR +FD 
Sbjct: 287 VTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDM 346

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           +  KN+ISW+ MIA YG HG+G+ A+ LF  M  S + P+  +F ++LYACSH+GL +EG
Sbjct: 347 LTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEG 406

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            R F++M ++  + P +KHY CMVDLL   G L EA + IE+M +E D  +W +LL  CR
Sbjct: 407 WRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCR 466

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           IH+NV LAE  A+ + E +P+N G+YVLL+N+YA A RW+ V K+++ +  R L++  G 
Sbjct: 467 IHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGC 526

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           +WIEV  K H F   +  HPQ   I   L  ++ +++  G+ P   + L   D+ V    
Sbjct: 527 SWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEA 586

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHH 565
           L  HS KLA+AFG++   +G  IR+ KN RVC  CH   K +S +  R II+RD+NRFHH
Sbjct: 587 LCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHH 646

Query: 566 FEGGACSCRDYW 577
           FE G CSCR YW
Sbjct: 647 FEEGRCSCRGYW 658



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 156/393 (39%), Gaps = 88/393 (22%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  +V  G      V N L+  YA    + DA  +F+ M +RD +SW+ ++GG +    
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           +    E F      G +LDS TL  V+ AC       +G ++H   +++GL  +  +  A
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-------------------GANKFLLD 239
           L+DMY+ C       ++F  M  +++V+WT MI                   G      D
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 240 VILGTAVID-----------------------------------MYAKCGSIDSAREIFD 264
           V   T+ +D                                   MY KCG ++ AR IFD
Sbjct: 186 VFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFD 245

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            + +K+ ISW+ +I  Y       +A  LF  ML  ++ PN +T   +L A +    +E 
Sbjct: 246 HVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPAAASLSSLER 304

Query: 325 GLRLFS------SMWDDFAVRPDVKHY------------------------TCMVDLLGR 354
           G  + +       + D+F     V  Y                        T M+   G 
Sbjct: 305 GREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGM 364

Query: 355 AGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
            GR  +A+ L E M    ++ D G + A+L AC
Sbjct: 365 HGRGRDAIALFEQMKGSGIQPDAGSFSAILYAC 397



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 64/265 (24%)

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G ++H  ++K G      VC AL+  YAK   I+DA  +FD+MP RD+++W  +IG    
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 234 ----------------------NKFLLDVI-----------------------------L 242
                                 +  LL V+                             L
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G A++DMY+ C    S  +IF  M QKNV+SW+AMI +Y   G   K   LF  M    +
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRL 358
            P+     S L A +    ++ G  +       +A+R  ++        ++++  + G +
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHG-----YAIRNGIEEVLPVANALMEMYVKCGYM 237

Query: 359 DEALKLIESMSVEKDEGLWGALLGA 383
           +EA + I     +KD   W  L+G 
Sbjct: 238 EEA-RFIFDHVTKKDTISWNTLIGG 261



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 79/179 (44%), Gaps = 10/179 (5%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++HA  V  G L +  VAN L+ +Y    AL  A  LF+ +  ++ +SW++M+ G+   
Sbjct: 306 REMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMH 365

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRAC-----RDRKDIVMGRLIHDIVLKSGLDI 191
               +    F +    G+Q D+ +   ++ AC     RD        + ++  ++  L  
Sbjct: 366 GRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKL-- 423

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDM 249
             + C  +VD+      + +A +  + MP   D   W  ++   +   +V L   V +M
Sbjct: 424 KHYAC--MVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEM 480


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/597 (35%), Positives = 320/597 (53%), Gaps = 70/597 (11%)

Query: 40  MNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVAN 96
           M  + P  M PD           F S+L +C    +I Q R++ A+ VA G  ++ IV N
Sbjct: 151 MVSKSPEGMKPD--------AITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQN 202

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
            L+ +Y+   +L  A  +F+ +K RD ++W+ M+ G++K        E F+       + 
Sbjct: 203 ALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP 262

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQ- 214
           +  T   ++ AC + +D+  GR IH  V + G + D  +   L++MY KC   +++ARQ 
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQV 322

Query: 215 ------------------------------LFDQMPTRDLVTWTV--------------- 229
                                         +F QM   ++    +               
Sbjct: 323 FERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAK 382

Query: 230 --------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                   +I + +   DV+L  ++++MY +CGS+D    +F  +R K+++SWS +IAAY
Sbjct: 383 RQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAY 442

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG  +  L+ F  +L   +  + +T VS L ACSH G+++EG++ F SM  D  + PD
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPD 502

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
            +H+ CMVDLL RAGRL+ A  LI  M    D   W +LL  C++H +   A   A  L 
Sbjct: 503 YRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF 562

Query: 402 ERQPQNPGHYV-LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           E + ++    V LLSNVYA AGRW DV K R+   RR  +K PG ++IE+ + +H+F  G
Sbjct: 563 ELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAG 619

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D +HP+ E I   +  LS++++ AGY+PD    LH+V EE K   L  HSEKLAIA+GLI
Sbjct: 620 DKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLI 679

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +TP GT + I+KNLR C DCH+  K +S I  R I+VRD+ RFHHFE G+CSC+DYW
Sbjct: 680 STPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 182/393 (46%), Gaps = 68/393 (17%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHAL 114
           D   F+ ++  C +   ++Q   +HA I+    L  ++I+   L+ +YA  + L  A   
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKT 116

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC---GMQLDSYTLPFVIRACRDR 171
           F+ M ++  V+W+ ++ G+S+  D     + +++ +     GM+ D+ T    + AC   
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVV 176

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            DI  GR I    + SG   D  V  AL++MY+KC  ++ AR++FD++  RD++ W  MI
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236

Query: 232 G-----------------------------------ANKFLLDVILGTAV---------- 246
                                               A   L D+  G A+          
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYE 296

Query: 247 ---------IDMYAKC-GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                    ++MY KC  S++ AR++F+RMR ++VI+W+ +I AY  +GQ K ALD+F  
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    V PN IT  ++L AC+  G   +G +   ++      + DV     ++++  R G
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCG 415

Query: 357 RLDEALKLIESMSVEKDEGL--WGALLGACRIH 387
            LD+ + +  ++   +D+ L  W  L+ A   H
Sbjct: 416 SLDDTVGVFAAI---RDKSLVSWSTLIAAYAQH 445



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 168/342 (49%), Gaps = 61/342 (17%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y    ++ DA A+F+ ++  +SVSW+++V  F++   +      +R  +  G++ D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
               I  C   KD+  G+L+H ++L++  L+ D  +  AL+ MYA+C+ ++ AR+ FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 220 PTRDLVTWTVMI----------GANKFLLDV----------------------------- 240
             + LVTW  +I          GA K   D+                             
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 241 ------------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                             I+  A+I+MY+KCGS++SAR++FDR++ ++VI+W+ MI+ Y 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
             G   +AL+LF  M  +   PN +TF+ LL AC++   +E+G  +   + +D     D+
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED-GYESDL 299

Query: 343 KHYTCMVDLLGR-AGRLDEALKLIESMSVEKDEGLWGALLGA 383
                ++++  + +  L+EA ++ E M   +D   W  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRT-RDVITWNILIVA 340


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/585 (36%), Positives = 322/585 (55%), Gaps = 73/585 (12%)

Query: 1   MSKLKKHGFL--VSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSV 58
           +S+L  HG L    ++  LR  + S    +ALE H         R+ +   PD   T + 
Sbjct: 73  LSRLLPHGPLDPFPLNTVLRIAAGSPRPRVALELHRR-------RLAL---PD---THTY 119

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
            P      + +C  +  +R+   +HA+    G +T + V N L+++Y        AH +F
Sbjct: 120 PPL-----IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVF 174

Query: 116 NGM--KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           + M  + R+ VSW+ M+  F+           F E +      D +T+  V+ AC +   
Sbjct: 175 DEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGA 234

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           + +GR +H  V K GL  +  V  AL                                  
Sbjct: 235 LALGRRVHVYVEKVGLVENSHVSNAL---------------------------------- 260

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALD 292
                        ID+YAKCGS++ AR IF+ M   + V+SW+++I     +G GK+AL+
Sbjct: 261 -------------IDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFGKEALE 307

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF +M   +++P  IT V +LYACSH GLV++G R F  M +D+ + P ++H  CMVDLL
Sbjct: 308 LFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGCMVDLL 367

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAGR++EA   I +M +E +  +W  LLG+C +HK ++L ++A + L+E  P + G YV
Sbjct: 368 GRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGHSGDYV 427

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLSN+YA  G W DV  +R  M + R++K PG + +E+ N +++F +GD +HP+SE+IY 
Sbjct: 428 LLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPESEQIYE 487

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
           ML  ++E+L   GYIP T+  L D++EE K   L  HSE+LAIAF L+ +  G  IRI+K
Sbjct: 488 MLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIPIRIIK 547

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLR+CGDCH     +S +  R IIVRD +RFHHF+GGACSC+DYW
Sbjct: 548 NLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/539 (36%), Positives = 312/539 (57%), Gaps = 56/539 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    L+  YA +  +  A  +F+ +  +D VSW+ ++ G+++  ++    E F+E +
Sbjct: 168 DVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM 227

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +  ++ D  T+  V+ AC     I +GR +H  +   G   +  +  AL+D+Y KC  ++
Sbjct: 228 KTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 211 -------------------------------DARQLFDQM----PTRDLVTWTVMIGANK 235
                                          +A  LF +M     + + VT   ++ A  
Sbjct: 288 TASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACA 347

Query: 236 FLLDVILG---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
            L  + +G                     T++IDMYAKCG I++A+++FD M  +++ SW
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+   A D+F  M    + P+ ITFV LL ACSH+G+++ G  +F SM +
Sbjct: 408 NAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTE 467

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P ++HY CM+DLLG +G   EA ++I SM ++ D  +W +LL AC++H NV+L E
Sbjct: 468 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGE 527

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A++L++ +P+N G YVLLSN+YA AGRW +VAK R L+  + +KK+PG + IE+++ +
Sbjct: 528 SFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F +GD  HP++ EIY ML  +   LE AG++PDT+  L +++EE K G L  HSEKLA
Sbjct: 588 HEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 647

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           IAFGLI+T  GT + I+KNLRVC +CH   K +S I +R II RD  RFHHF  G CSC
Sbjct: 648 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/374 (30%), Positives = 191/374 (51%), Gaps = 29/374 (7%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKE 120
           +S L +C+ +  +R +HA+++  G        +KL+    L      LT A ++F+ ++E
Sbjct: 6   LSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQE 65

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
            + + W+ M  G +  +D ++    +   I  G+  +SYT PF+++AC   K    G+ I
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQI 125

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H  VLK G D+D +V  +L+ MY K    +DAR++FDQ   RD+V++             
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSY------------- 172

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
              TA+I  YA  G I SA+++FD +  K+V+SW+A+I+ Y   G  K+AL+LF  M+ +
Sbjct: 173 ---TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKT 229

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T V++L AC+ +  +E G R   S  DD     ++K    ++DL  + G ++ 
Sbjct: 230 NVKPDESTMVTVLSACAQSASIELG-RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  L E +S  KD   W  L+G    H N+    +     + R  ++P    +LS + A 
Sbjct: 289 ASGLFEGLSY-KDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPAC 346

Query: 421 A-------GRWQDV 427
           A       GRW  V
Sbjct: 347 AHLGAIDIGRWIHV 360


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/538 (39%), Positives = 301/538 (55%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   LL +YA    + DAHA+F  +   D + WS ++  +++       FE F   +R  
Sbjct: 286 VGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSF 345

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID--- 210
           +  + ++L  V++AC +   + +G  IH++ +K G + + FV  AL+DMYAKC+ ++   
Sbjct: 346 VVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSL 405

Query: 211 ----------------------------DARQLFDQMPTRDLVTWTV------------- 229
                                       DA  +F +M    +++  V             
Sbjct: 406 EIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTS 465

Query: 230 ----------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                     +I  + F  D I+  ++ID YAKCG I  A ++F+ + + +V+SW+++I+
Sbjct: 466 SIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIIS 525

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           AY  HG+   AL+LF  M  S +  N +TFVSLL  C  TGLV +GL LF+SM  D  ++
Sbjct: 526 AYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIK 585

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HYTC+V LLGRAGRL +ALK I  +       +W ALL +C +HKNV L   AA+ 
Sbjct: 586 PSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEK 645

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           +L+ +P +   YVLLSN+YA AG   +VA  R  M    +KK  G +W+E++ ++H FSV
Sbjct: 646 VLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSV 705

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           G + HP    I  ML  L+ K    GY+PD N  LHDVDEE K   L+ HSE+LA+A+GL
Sbjct: 706 GSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGL 765

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             TP G  IRIMKNLR C DCH+  K +S I +R IIVRD NRFHHFE G CSC DYW
Sbjct: 766 SMTPPGHPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 63/368 (17%)

Query: 77  RQVHAQIVAGGTLTNL--IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VHA++V  G +  L    AN LL  YA    L  A  LF+GM ER+ VS+  ++ G++
Sbjct: 65  RAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYA 124

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIR--ACRDRKDIVMGRLIHDIVLKSGLDID 192
              +F    E FR   R G +++ + L  +++     D   +  G  IH    K G D +
Sbjct: 125 LRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACG--IHACACKLGHDRN 182

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------- 233
            FV  AL+D Y+ C  +  AR +FD +  +D VTWT M+                     
Sbjct: 183 AFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRM 242

Query: 234 -----NKFLLDVIL------------------------------GTAVIDMYAKCGSIDS 258
                N F+L   L                              G A++DMYAKCG I+ 
Sbjct: 243 TGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIED 302

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           A  IF+ +   +VI WS +I+ Y    Q ++A ++F  M+ S V+PN  +   +L AC++
Sbjct: 303 AHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACAN 362

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
              +E G ++  ++        ++     ++D+  +   ++ +L++  S+  + +E  W 
Sbjct: 363 IAFLELGEQI-HNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQ-DANEVSWN 420

Query: 379 ALL-GACR 385
            ++ G C+
Sbjct: 421 TIIVGYCQ 428



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 66/287 (22%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG--LDIDQFVCAALVDMYAKCKVIDDA 212
           +LDSY     ++ C  R D   GR +H  V++ G    +D F    L++ YAK   +  A
Sbjct: 42  KLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATA 101

Query: 213 RQLFDQMPTRDLVTW-TVMIG-----------------------ANKFLLDVIL------ 242
           R+LFD MP R+ V++ T+M G                        N F+L  IL      
Sbjct: 102 RRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 243 ------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                                   GTA+ID Y+ CG++  AR +FD +  K+ ++W+AM+
Sbjct: 162 DAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA--CSHTGLVEEGLRLFS--SMWD 334
           + Y  +   + AL+ F  M  +   PN     S L A  C  + L+ +G+   S  +++D
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYD 281

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
                P V     ++D+  + G +++A  + E M    D  LW  L+
Sbjct: 282 ---TEPHVG--GALLDMYAKCGDIEDAHAIFE-MIPHDDVILWSFLI 322


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 300/559 (53%), Gaps = 56/559 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q++++HA ++  G      +  +LL    +   +  A  +F+ M +     W+ +  G+ 
Sbjct: 26  QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +          +++    G++ D +T PFV++A     D   G  +H  V+K G      
Sbjct: 86  RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI 145

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------NKFLLD- 239
           V   LV MY K   +  A  LF+ M  +DLV W   +                NK   D 
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADA 205

Query: 240 ---------------------------------------VILGTAVIDMYAKCGSIDSAR 260
                                                  +I+  A +DM+ KCG+ ++AR
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+ M+Q+NV+SWS MI  Y  +G  ++AL LF  M +  + PN +TF+ +L ACSH G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 321 LVEEGLRLFSSM--WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           LV EG R FS M   +D  + P  +HY CMVDLLGR+G L+EA + I+ M VE D G+WG
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWG 385

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALLGAC +H+++ L +  A  L+E  P    ++VLLSN+YA AG+W  V K+R  M +  
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
            KK+  ++ +E E KIH F+ GD +HPQS+ IY  L  + +K+   GY+PDT    HDV+
Sbjct: 446 TKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVE 505

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
            E K  +L  HSEKLAIAFGLI    G  IR+MKNLR C DCH+F K VS++T   II+R
Sbjct: 506 MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMR 565

Query: 559 DANRFHHFEGGACSCRDYW 577
           D NRFHHF  G CSC+++W
Sbjct: 566 DKNRFHHFRNGVCSCKEFW 584


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/573 (36%), Positives = 320/573 (55%), Gaps = 64/573 (11%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMK 119
           F + S  S       +Q+H  ++ GG      V   L+ +Y     + DA  +F  N   
Sbjct: 55  FILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHS 114

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +  V ++ ++ G++  +   +    FR     G+ +DS T+  ++  C   + + +GR 
Sbjct: 115 SQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRS 174

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR-------------------------- 213
           +H   +K G   +  V  + + MY KC  ++  R                          
Sbjct: 175 LHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGL 234

Query: 214 -----QLFDQMPTRDLVT--WTV---------------------MIGANKFLLDVILGTA 245
                +LF+QM +  +    +T+                     ++ AN F  +V L  A
Sbjct: 235 AYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNA 294

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I MYA+CG++  AR +FD M  K+++SW+AMI  YG HG G+  L LF  M+   + P+
Sbjct: 295 LISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPD 354

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
              FV +L ACSH+GL ++GL LF +M  ++ + P  +HY+C+VDLLGRAGRLDEA++ I
Sbjct: 355 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 414

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           +SM VE D  +WGALLGAC+IHKNVD+AE+A   ++E +P N G+YVL+SN+Y+++   +
Sbjct: 415 DSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQE 474

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL-SEKLELA 484
            + +IR +M  R  +K PG++++E + K+H F  GD +H Q+EE++RML  L +  +ELA
Sbjct: 475 GIWRIRVMMRERAFRKKPGYSYVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELA 534

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           G     N +  D  EEV       HSE+LAIAFG++ +  GT I ++KNLRVC DCH FI
Sbjct: 535 G-----NMDC-DRGEEVS-STTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFI 587

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K VS I  R  +VRDA+RFH+F+ G CSC+DYW
Sbjct: 588 KLVSKIVDRRFVVRDASRFHYFKDGVCSCKDYW 620



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 142/340 (41%), Gaps = 46/340 (13%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           S SW+V +   +  + F      +R  +R G   D+++ PF++++C      V G+ +H 
Sbjct: 15  STSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 74

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
            V++ G + + FV  AL+ MY KC +++DAR++F++ P    +               + 
Sbjct: 75  HVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLG--------------VC 120

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA---------YGYHGQGKKALDL 293
             A+I  Y     +  A  +F RM++  V   S  I           Y + G+      +
Sbjct: 121 YNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECV 180

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
                S   + N  +F+++   C   G VE G RLF    D+  V+  +  +  ++    
Sbjct: 181 KGGTYSEVAVLN--SFITMYMKC---GSVESGRRLF----DEMPVKGLIT-WNAVISGYS 230

Query: 354 RAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           + G   + L+L E M    V  D     ++L +C  H            L+E     P  
Sbjct: 231 QNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSC-AHLGAKKIGQEVGELVEANGFAPN- 288

Query: 411 YVLLSN----VYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
            V LSN    +YA  G   ++AK R +     +K +  WT
Sbjct: 289 -VFLSNALISMYARCG---NLAKARAVFDIMPVKSLVSWT 324


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 295/557 (52%), Gaps = 76/557 (13%)

Query: 77  RQVHAQIV--AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VH  IV   G     + +   L+ +Y     L  A  LF+ + +R  VSW+VM+ G  
Sbjct: 209 RAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCI 268

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +        + F   +   +  +  TL  +I  C     + +G+  H  +L++G  +   
Sbjct: 269 RSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLA 328

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRD------------------------------- 223
           +  AL+DMY KC  +  AR LF+ +  +D                               
Sbjct: 329 LVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNND 388

Query: 224 ----------------------LVTWT-VMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
                                 L  WT   I  +   +DVIL TA+I+MYAKCG +  AR
Sbjct: 389 VKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIAR 448

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+   Q+++  W+ M+A +  HG GK+AL+LF  M S  V PN ITFVS+ +ACSH+G
Sbjct: 449 SLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSG 508

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           L+E                    HY C+VDLLGRAG LDEA  +IE+M +  +  +WGAL
Sbjct: 509 LME--------------------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGAL 548

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L AC++HKN+ L E+AA+ +LE  PQN G+ VL SN+YA+A RW DV  +R+ M+   +K
Sbjct: 549 LAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMK 608

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K PG +WIEV   +H F  GD    Q+ ++Y M+  +  KL  +GY P+T   L ++DEE
Sbjct: 609 KEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEE 668

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K   L  HSEKLA AFGLI+T  GT IRI+KNLR+C DCH+  K +S I  R IIVRD 
Sbjct: 669 EKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDR 728

Query: 561 NRFHHFEGGACSCRDYW 577
           NRFHHF  G CSC  YW
Sbjct: 729 NRFHHFSEGYCSCMGYW 745



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 170/367 (46%), Gaps = 58/367 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H      G  +++ V N L+ +Y     L  A  +F+ M ERD VSW+ M+G + + 
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRS 167

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD--IDQF 194
             F       RE    G++L    L  +I    +  D+  GR +H  ++++  D  ++  
Sbjct: 168 KAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVS 227

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKF------- 236
           +  AL+DMY K   +  A++LFD++  R +V+WTVMI           GA  F       
Sbjct: 228 MTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEK 287

Query: 237 -------LLDVI-----------------------------LGTAVIDMYAKCGSIDSAR 260
                  LL +I                             L TA+IDMY KCG +  AR
Sbjct: 288 LFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYAR 347

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+ +++K+V  WS +I+AY +     +  +LF  ML++ V PN +T VSLL  C+  G
Sbjct: 348 ALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAG 407

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            ++ G +   +  +   +  DV   T ++++  + G +  A  L    ++++D  +W  +
Sbjct: 408 ALDLG-KWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNE-AMQRDIRMWNTM 465

Query: 381 LGACRIH 387
           +    +H
Sbjct: 466 MAGFSMH 472



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 152/345 (44%), Gaps = 65/345 (18%)

Query: 99  LYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK----VADFINCFETFREFIRCGM 154
           L+ + +     + H  F+        ++++++  ++      A F NC+   R       
Sbjct: 28  LHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASF-NCYLHMRS--NDAA 84

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
            LD++ LP +++AC       +GR +H    K+G   D FVC AL++MY KC  +  AR 
Sbjct: 85  ALDNFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARL 144

Query: 215 LFDQMPTRDLVTWTVMIG----ANKF-------------------------------LLD 239
           +FDQMP RD+V+WT M+G    +  F                               LLD
Sbjct: 145 VFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLD 204

Query: 240 VILGTAV---------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           +  G AV                     IDMY K G + SA+ +FDR+ +++V+SW+ MI
Sbjct: 205 MKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMI 264

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           A      +  +    F  ML  ++ PN IT +SL+  C   G ++ G + F +       
Sbjct: 265 AGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLG-KWFHAYLLRNGF 323

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              +   T ++D+ G+ G++  A  L   +  +KD  +W  L+ A
Sbjct: 324 GMSLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISA 367


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/597 (35%), Positives = 320/597 (53%), Gaps = 70/597 (11%)

Query: 40  MNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVAN 96
           M  + P  M PD           F S+L +C    +I Q R++ A+ VA G  ++ IV N
Sbjct: 151 MVSKSPEGMKPD--------AITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQN 202

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
            L+ +Y+   +L  A  +F+ +K RD ++W+ M+ G++K        E F+       + 
Sbjct: 203 ALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKP 262

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQ- 214
           +  T   ++ AC + +D+  GR IH  V + G + D  +   L++MY KC   +++ARQ 
Sbjct: 263 NVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQV 322

Query: 215 ------------------------------LFDQMPTRDLVTWTV--------------- 229
                                         +F QM   ++    +               
Sbjct: 323 FERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAK 382

Query: 230 --------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                   +I + +   DV+L  ++++MY +CGS+D    +F  +R K+++SWS +IAAY
Sbjct: 383 RQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAY 442

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG  +  L+ F  +L   +  + +T VS L ACSH G+++EG++ F SM  D  + PD
Sbjct: 443 AQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPD 502

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
            +H+ CMVDLL RAGRL+ A  LI  M    D   W +LL  C++H +   A   A  L 
Sbjct: 503 YRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLF 562

Query: 402 ERQPQNPGHYV-LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           E + ++    V LLSNVYA AGRW DV K R+   RR  +K PG ++IE+ + +H+F  G
Sbjct: 563 ELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRAARKNPGCSYIEINDTVHEFVAG 619

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D +HP+ E I   +  LS++++ AGY+PD    LH+V EE K   L  HSEKLAIA+GLI
Sbjct: 620 DKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLI 679

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +TP GT + I+KNLR C DCH+  K +S I  R I+VRD+ RFHHFE G+CSC+DYW
Sbjct: 680 STPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 182/393 (46%), Gaps = 68/393 (17%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHAL 114
           D   F+ ++  C +   ++Q   +HA I+    L  ++I+   L+ +YA  + L  A   
Sbjct: 57  DGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKT 116

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC---GMQLDSYTLPFVIRACRDR 171
           F+ M ++  V+W+ ++ G+S+  D     + +++ +     GM+ D+ T    + AC   
Sbjct: 117 FDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVV 176

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            DI  GR I    + SG   D  V  AL++MY+KC  ++ AR++FD++  RD++ W  MI
Sbjct: 177 GDISQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMI 236

Query: 232 G-----------------------------------ANKFLLDVILGTAV---------- 246
                                               A   L D+  G A+          
Sbjct: 237 SGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYE 296

Query: 247 ---------IDMYAKC-GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                    ++MY KC  S++ AR++F+R+R ++VI+W+ +I AY  +GQ K ALD+F  
Sbjct: 297 SDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQ 356

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    V PN IT  ++L AC+  G   +G +   ++      + DV     ++++  R G
Sbjct: 357 MQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIASGRCKADVVLENSLMNMYNRCG 415

Query: 357 RLDEALKLIESMSVEKDEGL--WGALLGACRIH 387
            LD+ + +  ++   +D+ L  W  L+ A   H
Sbjct: 416 SLDDTVGVFAAI---RDKSLVSWSTLIAAYAQH 445



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 142/283 (50%), Gaps = 58/283 (20%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y    ++ DA A+F+ ++  +SVSW+++V  F++   +      +R  +  G++ D   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
               I  C   KD+  G+L+H ++L++  L+ D  +  AL+ MYA+C+ ++ AR+ FD+M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 220 PTRDLVTWTVMI----------GANKFLLDV----------------------------- 240
             + LVTW  +I          GA K   D+                             
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 241 ------------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                             I+  A+I+MY+KCGS++SAR++FDR++ ++VI+W+ MI+ Y 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
             G   +AL+LF  M  +   PN +TF+ LL AC++   +E+G
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG 283



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 4/190 (2%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY KCGS+  A  +F  +   N +SW+ ++AA+  +G  ++AL  +  M+   + P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           FV  +  CS +  +++G  L + + +   +  D+   T ++ +  R   L+ A K  + M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGHYVLLSNVYANAGRWQD 426
             +K    W AL+     + +   A    + ++ + P+   P      S +YA      D
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYA-CSVVGD 178

Query: 427 VAKIRDLMTR 436
           +++ R++  R
Sbjct: 179 ISQGREIEAR 188


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 315/621 (50%), Gaps = 120/621 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS-- 134
           R+VH  +V  G  + + VAN +LY+Y        A A+F  M+ R   SW+VMV  ++  
Sbjct: 367 RKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQ 426

Query: 135 -----KVADFINCFE---------------------TFREFIR----CGMQLDSYTLPFV 164
                 V+ F N  E                       + F R      M+ D++T+  V
Sbjct: 427 GRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSV 486

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID-------------- 210
           + AC + + + MG+ +H  +L++G+     +  AL+  YAK   ++              
Sbjct: 487 LSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADL 546

Query: 211 -------------------DARQLFDQMPTRDLVTWT----------------------V 229
                               AR++FD M  RD++ WT                      +
Sbjct: 547 NVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMI 606

Query: 230 MIGA--NKFLLDVILG------------------------------TAVIDMYAKCGSID 257
           +IG   N   L  +L                                A+I +YA+ GS+ 
Sbjct: 607 LIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVP 666

Query: 258 SAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
            AR +FD++  +K  I+W++MI A   HG G++A+ LF  M+   V P+ IT+V +L AC
Sbjct: 667 LARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSAC 726

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           +H G V++G R +  M ++  + P + HY CMVDL  RAG L EA + I+ M V  D  +
Sbjct: 727 AHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVV 786

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WG+LL ACR+ KN DLAE+AA  LL   P N G Y  L+NVY+  GRW D A+I  L   
Sbjct: 787 WGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKD 846

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + +KK  G++W  V  K+H F   D  HPQ + IYR    + E+++ AG++PD N  LHD
Sbjct: 847 KGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHD 906

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VD+E+K   L  HSEKLAIAFGLI+TPE T +RIMKNLRVC DCH+ IK +S    R II
Sbjct: 907 VDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKFVDREII 966

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA RFHHF  G CSC+DYW
Sbjct: 967 VRDATRFHHFRDGYCSCKDYW 987



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 126/241 (52%), Gaps = 17/241 (7%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N    N LL +YA    L DAH +F  M +RD+VSW++M+ G ++   F +  +TF + +
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G     +TL  V+ +C   +   +GR +H  V+K GL     V  +++ MY KC   +
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAE 399

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR +F++M  R + +W VM                + +Y   G ++ A  +F+ M +++
Sbjct: 400 TARAVFERMQVRSVSSWNVM----------------VSLYTHQGRMELAVSMFENMVERS 443

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++SW+ +IA Y  +G    AL  F  MLS S + P+  T  S+L AC++  +++ G ++ 
Sbjct: 444 IVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMH 503

Query: 330 S 330
           S
Sbjct: 504 S 504



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 95/269 (35%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC--------------------------- 196
           +++ CR   +   GR IH   +K+GL +  ++C                           
Sbjct: 215 LLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDI 274

Query: 197 ----------AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GAN---------KF 236
                      +L+ +YAK   + DA  +F +MP RD V+WT+MI G N         K 
Sbjct: 275 PYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 237 LLDVI--------------------------------------------LGTAVIDMYAK 252
            LD++                                            +  +V+ MY K
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGK 394

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG  ++AR +F+RM+ ++V SW+ M++ Y + G+ + A+ +F  M+   +    +++ ++
Sbjct: 395 CGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTI 450

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
           +   +  GL    L+ FS M    ++ PD
Sbjct: 451 IAGYNQNGLDGMALKFFSRMLSASSMEPD 479


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/538 (38%), Positives = 302/538 (56%), Gaps = 54/538 (10%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   LL +YA    + DA  +F  +   D + WS ++  +++       FE F   +R  
Sbjct: 288 VGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSS 347

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID--- 210
           +  + ++L  V++AC +   + +G+ IH++V+K G + + FV  AL+D+YAKC+ ++   
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSL 407

Query: 211 ----------------------------DARQLFDQMPTRDLVTWTV------------- 229
                                       DA  +F +M    +++  V             
Sbjct: 408 EIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTA 467

Query: 230 ----------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                     +I  + F  D I+  ++ID YAKCG I  A ++F+ + Q +V+SW+A+I+
Sbjct: 468 SIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIIS 527

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y  HG+   AL+LF  M  S   PN +TFV+LL  C  TGLV +GL LF+SM  D  ++
Sbjct: 528 GYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIK 587

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P + HYTC+V LLGRAGRL++ALK I  +       +W ALL +C +HKNV L + +A+ 
Sbjct: 588 PSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEK 647

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           +LE +PQ+   YVLLSN+YA AG    VA +R  M    +KK  G +W+E++ ++H FSV
Sbjct: 648 VLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSV 707

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           G + HP    I  ML  L+ K    GY+PD N  LHDVDEE K   L+ HSE+LA+A+GL
Sbjct: 708 GSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGL 767

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             TP G  IRIMKNLR C DCH+  K +S I +R I+VRD NRFHHF+ G CSC DYW
Sbjct: 768 SMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 57/399 (14%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA     G   N  V + L+  Y+L  A++ A  +F+G+  +D+V+W+ MV  +S+   
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
             +   TF +    G + + + L  V++A       V+G+ IH   +K+  D +  V  A
Sbjct: 232 PEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGA 291

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------AN 234
           L+DMYAKC  I+DAR +F+ +P  D++ W+ +I                          N
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351

Query: 235 KFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREIFD 264
           +F L  +L                              G A++D+YAKC +++++ EIF 
Sbjct: 352 EFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFR 411

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
            +R  N +SW+ +I  Y   G  + AL +F  M ++ VL  ++TF S+L AC++T  ++ 
Sbjct: 412 SLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKH 471

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
            +++  S+ +      D      ++D   + G + +ALK+ ES+ ++ D   W A++   
Sbjct: 472 TVQIH-SLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGY 529

Query: 385 RIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            +H +  D  E+  +        N   +V L +V  + G
Sbjct: 530 ALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTG 568



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 166/366 (45%), Gaps = 59/366 (16%)

Query: 77  RQVHAQIVAGGTLTNL--IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VHA++V  G +  L    AN LL +YA    L  A  LF+GM ER+ VS+  +V G++
Sbjct: 67  RAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYA 126

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
               F      FR   R G +++ + L  +++         +   IH    K G D + F
Sbjct: 127 LRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAF 186

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233
           V ++L+D Y+ C  +  AR +FD +  +D VTWT M+                       
Sbjct: 187 VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAG 246

Query: 234 ---NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAR 260
              N F+L  +L                              G A++DMYAKCG I+ AR
Sbjct: 247 AKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDAR 306

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+ +   +VI WS +I+ Y    Q ++A ++F  M+ S V+PN  +   +L AC++  
Sbjct: 307 TVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVA 366

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            ++ G ++  ++        ++     ++D+  +   ++ +L++  S+  + +E  W  +
Sbjct: 367 FLDLGQQIH-NLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLR-DANEVSWNTI 424

Query: 381 L-GACR 385
           + G C+
Sbjct: 425 IVGYCQ 430



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 125/287 (43%), Gaps = 66/287 (22%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG--LDIDQFVCAALVDMYAKCKVIDDA 212
           +LDSY    +++ C  R D   GR +H  V++ G    +D F    L+++YAK   +  A
Sbjct: 44  KLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAA 103

Query: 213 RQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL------ 242
           R+LFD MP R++V++  ++                          N F+L  IL      
Sbjct: 104 RRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 243 ------------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                                   G+++ID Y+ CG++  AR +FD +  K+ ++W+AM+
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA--CSHTGLVEEGLR--LFSSMWD 334
           + Y  +   + AL+ F  M  +   PN     S+L A  C  + ++ +G+      ++ D
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
                P V     ++D+  + G +++A  + E +    D  LW  L+
Sbjct: 284 ---TEPHVG--GALLDMYAKCGYIEDARTVFEIIP-HDDVILWSFLI 324


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/541 (38%), Positives = 301/541 (55%), Gaps = 62/541 (11%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N ++Y Y  +  + D   LF  M  R+ +SW+ M+GG  +          FR+ + CG++
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 156 LD--SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD-- 211
           +   S T   VI AC +   +  G  IH  V K G   D ++ AAL+  YA CK ++D  
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242

Query: 212 -----------------------------ARQLFDQM------PT--------------- 221
                                        A ++F +M      P                
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLE 302

Query: 222 -----RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                R++ T  V +G      DV +G ++I MY +CG+++    IF R+ +KN++SW++
Sbjct: 303 ALDWGREIHTAAVKLGLET---DVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNS 359

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +I     HG G  AL  F  M+ S V P+ ITF  LL ACSH+G+ ++G  LF    ++ 
Sbjct: 360 VIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENK 419

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
           +    + HY CMVD+LGR+G+L+EA +LI +M V+ +  +W  LL AC +H  +++AE A
Sbjct: 420 SAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERA 479

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           AK +++ +P     YVLLSN+YA+A RW DV++IR  M +R + K PG +WI ++   ++
Sbjct: 480 AKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNE 539

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           F  GD +HP S+ IY+ L  L  KL+  GY+PD  F LHDV++E K   L  HSE+LAI 
Sbjct: 540 FLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIG 599

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI+T EG+ I +MKNLRVCGDCHS IK ++ I RR IIVRD+ RFHHF  G CSC DY
Sbjct: 600 FGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDY 659

Query: 577 W 577
           W
Sbjct: 660 W 660



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 33/181 (18%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D ++   ++  YA+    D A QLF +MP +D+V+W  MI   K   D            
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMI---KGCFD------------ 69

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR--ITF 309
            C  +  AR++FD M +++V+SW+ MI  +   G+ + A  LF  M      P R    +
Sbjct: 70  -CADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKM------PFRDIAAW 122

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRLDEALKLIES 367
            S++Y     G VE+GLRLF  M       P  +V  +T M+  L + GR +EAL L   
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEM-------PCRNVISWTSMIGGLDQHGRSEEALGLFRQ 175

Query: 368 M 368
           M
Sbjct: 176 M 176



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 21/142 (14%)

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL-----------------DVILGTAVID 248
           C  +  AR+LFD+MP R +V+WT MI  N FL                  D+    ++I 
Sbjct: 70  CADLTMARKLFDEMPERSVVSWTTMI--NGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIY 127

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNR 306
            Y   G ++    +F  M  +NVISW++MI     HG+ ++AL LF  M+     V P  
Sbjct: 128 GYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTS 187

Query: 307 ITFVSLLYACSHTGLVEEGLRL 328
            T+  ++ AC++   + +G+++
Sbjct: 188 STYCCVITACANASALYQGVQI 209



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S+L SC  +  +   R++H   V  G  T++ V N L+ +Y     L D   +F  + 
Sbjct: 291 FTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS 350

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +++ VSW+ ++ G ++    +     F + +R  ++ D  T   ++ AC        GR 
Sbjct: 351 KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRC 410

Query: 180 IHDIVLKSG---LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA-- 233
           +     ++    + +D + C  +VD+  +   +++A +L   MP + + + W V++ A  
Sbjct: 411 LFKYFSENKSAEVKLDHYAC--MVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACT 468

Query: 234 --NKFLLDVILGTAVIDMYAKCGS 255
             +K  +       +ID+   C S
Sbjct: 469 MHSKLEVAERAAKCIIDLEPHCSS 492


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/599 (35%), Positives = 312/599 (52%), Gaps = 89/599 (14%)

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           SV     ++  +   N+ + + ++ Q+       ++I +N ++ ++ +   + +A  LF+
Sbjct: 279 SVSWNSILAGYIEIGNVEEAKHIYHQMPE----RSIIASNSMIVLFGMRGLVVEACKLFD 334

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M E+D V+WS ++  F +   +     TF    + G+ +D       + AC +   + M
Sbjct: 335 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 177 GRLIHDIVLKSGLD-------------------------------IDQFVCAALVDMYAK 205
           G+LIH + LK G +                               +D     +++  Y K
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 206 CKVIDDARQLFDQMPTR-----------------------------------DLVTWTVM 230
           C ++D+A+ +FD MP +                                   D  T   +
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 231 IGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           I A                   N   ++VILGT +IDMY KCG +++A E+F  M +K +
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 574

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            +W+A+I     +G  + +LD+F  M    V PN ITF+ +L AC H GLV+EG   F S
Sbjct: 575 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 634

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M  D  ++P+VKHY CMVDLLGRAG+L EA +L+  M +  D   WGALLGAC+ H + +
Sbjct: 635 MIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 694

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           +     + L+E QP + G +VLLSN+YA+ G+W DV +IR +MT+ R+ KIPG + IE  
Sbjct: 695 MGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 754

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
             IH+F  GD THP  + I  MLV ++ KL+L GY PD N  L DVDEE K   L+ HSE
Sbjct: 755 GVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSE 814

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           KLAIAFGLI     T IRIMKNLR+C DCH+  K +S    R I+VRD +RFHHFE G 
Sbjct: 815 KLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQGG 873



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 192/463 (41%), Gaps = 117/463 (25%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R+ ++ +QVH  ++  G  +++ V N L+  +++   +TDA  +FN     DSVSW+ ++
Sbjct: 227 RSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSIL 286

Query: 131 GGFSKVAD---------------------------------------------------- 138
            G+ ++ +                                                    
Sbjct: 287 AGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSA 346

Query: 139 FINCF-------ETFREFI---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
            I CF       E  R F+   + G+ +D       + AC +   + MG+LIH + LK G
Sbjct: 347 LIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIG 406

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248
            +    +  AL+ MY+KC  I  AR+LFD+    DL++W  MI                 
Sbjct: 407 TESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISG--------------- 451

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            Y KC  +D+A+ IFD M +K+V+SWS+MI+ Y  +    + L LF  M  S   P+  T
Sbjct: 452 -YLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETT 510

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            VS++ AC+    +E+G  + + +  +  +  +V   T ++D+  + G ++ AL++   M
Sbjct: 511 LVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMKCGCVETALEVFYGM 569

Query: 369 SVEKDEGLWGAL-----------------------------------LGACRIHKNVDLA 393
            +EK    W AL                                   LGACR    VD  
Sbjct: 570 -IEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEG 628

Query: 394 EMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDVAKIRDLM 434
           +    S++      P   HY  + ++   AG+ Q+  ++ + M
Sbjct: 629 QHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM 671



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 115/239 (48%), Gaps = 16/239 (6%)

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
           F  ++  +   +  D+YT P +I+AC  R+     + +H+ VLK G D D +V   L++ 
Sbjct: 198 FTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINC 257

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV---------------ILGTAVI 247
           ++ C  + DA ++F++    D V+W  ++     + +V               I   ++I
Sbjct: 258 FSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMI 317

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
            ++   G +  A ++FD M +K++++WSA+IA +  +   ++A+  F  M    V+ + +
Sbjct: 318 VLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEV 377

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
             VS L AC++  +V  G +L  S+         +     ++ +  + G +  A KL +
Sbjct: 378 VAVSALSACANLLVVNMG-KLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFD 435


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 306/556 (55%), Gaps = 58/556 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVHA ++   ++ N+ V N LL  Y+    L D   LF+ M ERD+VS++V++  ++   
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316

Query: 138 DFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   FRE  + G   D   LP+  ++       D+ +G+ IH  ++  GL  +  +
Sbjct: 317 CAATVLRLFREMQKLG--FDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV-------------------------- 229
             AL+DMY+KC ++D A+  F     +  ++WT                           
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 434

Query: 230 ------------------MIGANKFLLDVIL----------GTAVIDMYAKCGSIDSARE 261
                             MIG  + L   ++          G+ ++DMYAKCG +D A  
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            FD M ++N ISW+A+I+AY ++G+ K A+ +F  ML     P+ +TF+S+L ACSH GL
Sbjct: 495 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 554

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +E ++ F  M   +++ P  +HY C++D LGR G   +  K++  M  + D  +W ++L
Sbjct: 555 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            +CRIH N +LA +AA  L   +P +   YV+LSN+YA AG+W+D A ++ +M  R ++K
Sbjct: 615 HSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRK 674

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G++W+E++ KI+ F+  D T P  +EI   L  L ++++  GY PD    LH VD E+
Sbjct: 675 ESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHEL 734

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K+ +L  HSE+LAIAF L+ TP GT IRIMKNL  C DCH+ IK +S I  R IIVRD+ 
Sbjct: 735 KLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSR 794

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC DYW
Sbjct: 795 RFHHFKDGVCSCGDYW 810



 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 171/362 (47%), Gaps = 56/362 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +  +H   +  G  T++ V N LL  Y  H  L  A  +F  M ++D+V+++ M+ G SK
Sbjct: 154 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 213

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   + F    R G+    +T   ++        +++G  +H +VL+S   ++ FV
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF------------------- 236
             +L+D Y+KC  +DD R+LFD+MP RD V++ V+I A  +                   
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 237 ----------------LLDVILG-------------------TAVIDMYAKCGSIDSARE 261
                           L DV +G                    A+IDMY+KCG +D+A+ 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F    +K+ ISW+A+I  Y  +GQ ++AL LF  M  + + P+R TF S++ A S   +
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +  G +L S +      +  V   + +VD+  + G LDEAL+  + M  E++   W A++
Sbjct: 454 IGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVI 511

Query: 382 GA 383
            A
Sbjct: 512 SA 513



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 16/102 (15%)

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           AR +FDQMP +           N F L++IL       Y+  G + +A+ +F     +N 
Sbjct: 62  ARAMFDQMPHK-----------NIFSLNLILSA-----YSSSGDLPAAQHLFLSSPHRNA 105

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
            +W+ M+ A+   G+   AL LF  ML   V+P+R+T  ++L
Sbjct: 106 TTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL 147



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR--ITFVS 311
           G +  AR +FD+M  KN+ S + +++AY   G    A  LF   LSS   P+R   T+  
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLF---LSS---PHRNATTWTI 110

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           ++ A +  G   + L LF +M  +  V PD    T +++L G
Sbjct: 111 MMRAHAAAGRTSDALSLFRAMLGE-GVIPDRVTVTTVLNLPG 151


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 283/515 (54%), Gaps = 55/515 (10%)

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M    +VSW+ ++  +      +      R     GM+ DS+T   V+ AC    D+  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 178 RLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------ 230
             +     +  G+    FV  A +D+Y KC  ++ AR +FD+M  RD V W  M      
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 231 --------------------------IGA----------------------NKFLLDVIL 242
                                     +GA                      ++ L + +L
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVL 180

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           GTA+IDMYAKCGS   A  +F +M ++++I W+AMI   G  G  K A  L   M  S V
Sbjct: 181 GTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSGV 240

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
             N  TF+ LL +C+HTGLV +G + F +M   + + P ++HY CMVDL  RAG L+EA 
Sbjct: 241 KLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEAH 300

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           +LI  M +  +  +WGALLG C+IH+N DLAE A K L+  +P N G+YV+LSN+Y+N+G
Sbjct: 301 QLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNSG 360

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW+D AK+R  M  + ++K+P  +W+E++ K+H+F VGD +HP S++IY  L  L  +++
Sbjct: 361 RWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEMK 420

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY P T   + DV+ E K   L  HSEK+AIAF LI T  G  IR+ KNLRVC DCHS
Sbjct: 421 AMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCHS 480

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK +S IT R I+VRD NRFH F  G CSC DYW
Sbjct: 481 AIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 97/214 (45%), Gaps = 20/214 (9%)

Query: 33  HGHEQNPMNPRVPMQM---GPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAG 86
           +GH +  ++    MQM    PDC +T        + +L +C  +  +   RQ    +   
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDC-YT-------VVGALSACTRLGALDLGRQAVGMVHWD 172

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
             L N ++   L+ +YA   + ++A  +F  M ERD + W+ M+ G          F   
Sbjct: 173 EVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALV 232

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGR-LIHDI--VLKSGLDIDQFVCAALVDMY 203
            +  + G++L+  T   ++ +C     +  GR   H++  V +    I+ + C  +VD++
Sbjct: 233 GQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGC--MVDLF 290

Query: 204 AKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKF 236
           ++  ++++A QL   MP   + V W  ++G  K 
Sbjct: 291 SRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKI 324


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/541 (38%), Positives = 301/541 (55%), Gaps = 62/541 (11%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N ++Y Y  +  + D   LF  M  R+ +SW+ M+GG  +          FR+ + CG++
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 156 LD--SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD-- 211
           +   S T   VI AC +   +  G  IH  V K G   D ++ AAL+  YA CK ++D  
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258

Query: 212 -----------------------------ARQLFDQM------PT--------------- 221
                                        A ++F +M      P                
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLE 318

Query: 222 -----RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                R++ T  V +G      DV +G ++I MY +CG+++    IF R+ +KN++SW++
Sbjct: 319 ALDWGREIHTAAVKLGLET---DVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNS 375

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +I     HG G  AL  F  M+ S V P+ ITF  LL ACSH+G+ ++G  LF    ++ 
Sbjct: 376 VIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENK 435

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
           +    + HY CMVD+LGR+G+L+EA +LI +M V+ +  +W  LL AC +H  +++AE A
Sbjct: 436 SAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERA 495

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           AK +++ +P     YVLLSN+YA+A RW DV++IR  M +R + K PG +WI ++   ++
Sbjct: 496 AKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNE 555

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           F  GD +HP S+ IY+ L  L  KL+  GY+PD  F LHDV++E K   L  HSE+LAI 
Sbjct: 556 FLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIG 615

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI+T EG+ I +MKNLRVCGDCHS IK ++ I RR IIVRD+ RFHHF  G CSC DY
Sbjct: 616 FGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDY 675

Query: 577 W 577
           W
Sbjct: 676 W 676



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 33/181 (18%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D ++   ++  YA+    D A QLF +MP +D+V+W  MI   K   D            
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMI---KGCFD------------ 85

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR--ITF 309
            C  +  AR++FD M +++V+SW+ MI  +   G+ + A  LF  M      P R    +
Sbjct: 86  -CADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKM------PFRDIAAW 138

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRLDEALKLIES 367
            S++Y     G VE+GLRLF  M       P  +V  +T M+  L + GR +EAL L   
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEM-------PCRNVISWTSMIGGLDQHGRSEEALGLFRQ 191

Query: 368 M 368
           M
Sbjct: 192 M 192



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 21/142 (14%)

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL-----------------DVILGTAVID 248
           C  +  AR+LFD+MP R +V+WT MI  N FL                  D+    ++I 
Sbjct: 86  CADLTMARKLFDEMPERSVVSWTTMI--NGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIY 143

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNR 306
            Y   G ++    +F  M  +NVISW++MI     HG+ ++AL LF  M+     V P  
Sbjct: 144 GYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTS 203

Query: 307 ITFVSLLYACSHTGLVEEGLRL 328
            T+  ++ AC++   + +G+++
Sbjct: 204 STYCCVITACANASALYQGVQI 225



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 93/204 (45%), Gaps = 13/204 (6%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S+L SC  +  +   R++H   V  G  T++ V N L+ +Y     L D   +F  + 
Sbjct: 307 FTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS 366

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           +++ VSW+ ++ G ++    +     F + +R  ++ D  T   ++ AC        GR 
Sbjct: 367 KKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRC 426

Query: 180 IHDIVLKSG---LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA-- 233
           +     ++    + +D + C  +VD+  +   +++A +L   MP + + + W V++ A  
Sbjct: 427 LFKYFSENKSAEVKLDHYAC--MVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACT 484

Query: 234 --NKFLLDVILGTAVIDMYAKCGS 255
             +K  +       +ID+   C S
Sbjct: 485 MHSKLEVAERAAKCIIDLEPHCSS 508


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 306/556 (55%), Gaps = 58/556 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVHA ++   ++ N+ V N LL  Y+    L D   LF+ M ERD+VS++V++  ++   
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316

Query: 138 DFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   FRE  + G   D   LP+  ++       D+ +G+ IH  ++  GL  +  +
Sbjct: 317 CAATVLRLFREMQKLG--FDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLL 374

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV-------------------------- 229
             AL+DMY+KC ++D A+  F     +  ++WT                           
Sbjct: 375 GNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGL 434

Query: 230 ------------------MIGANKFLLDVIL----------GTAVIDMYAKCGSIDSARE 261
                             MIG  + L   ++          G+ ++DMYAKCG +D A  
Sbjct: 435 RPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALR 494

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            FD M ++N ISW+A+I+AY ++G+ K A+ +F  ML     P+ +TF+S+L ACSH GL
Sbjct: 495 TFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 554

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +E ++ F  M   +++ P  +HY C++D LGR G   +  K++  M  + D  +W ++L
Sbjct: 555 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            +CRIH N +LA +AA  L   +P +   YV+LSN+YA AG+W+D A ++ +M  R ++K
Sbjct: 615 HSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRK 674

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G++W+E++ KI+ F+  D T P  +EI   L  L ++++  GY PD    LH VD E+
Sbjct: 675 ESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHEL 734

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K+ +L  HSE+LAIAF L+ TP GT IRIMKNL  C DCH+ IK +S I  R IIVRD+ 
Sbjct: 735 KLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSR 794

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC DYW
Sbjct: 795 RFHHFKDGVCSCGDYW 810



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 171/362 (47%), Gaps = 56/362 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +  +H   +  G  T++ V N LL  Y  H  L  A  +F  M ++D+V+++ M+ G SK
Sbjct: 154 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 213

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   + F    R G+    +T   ++        +++G  +H +VL+S   ++ FV
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF------------------- 236
             +L+D Y+KC  +DD R+LFD+MP RD V++ V+I A  +                   
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 237 ----------------LLDVILG-------------------TAVIDMYAKCGSIDSARE 261
                           L DV +G                    A+IDMY+KCG +D+A+ 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 393

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F    +K+ ISW+A+I  Y  +GQ ++AL LF  M  + + P+R TF S++ A S   +
Sbjct: 394 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +  G +L S +      +  V   + +VD+  + G LDEAL+  + M  E++   W A++
Sbjct: 454 IGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVI 511

Query: 382 GA 383
            A
Sbjct: 512 SA 513



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 23/173 (13%)

Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           AR +FDQMP +           N F L++IL       Y+  G + +A+ +F     +N 
Sbjct: 62  ARAMFDQMPHK-----------NIFSLNLILSA-----YSSSGDLPAAQHLFLSSPHRNA 105

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            +W+ M+ A+   G+   AL LF  ML   V+P+R+T  ++L   +  G     L  F+ 
Sbjct: 106 TTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVL---NLPGCTVPSLHPFAI 162

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
               F +   V     ++D   + G L  A ++   M  +KD   + A++  C
Sbjct: 163 ---KFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMH-DKDAVTYNAMMMGC 211



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR--ITFVS 311
           G +  AR +FD+M  KN+ S + +++AY   G    A  LF   LSS   P+R   T+  
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLF---LSS---PHRNATTWTI 110

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           ++ A +  G   + L LF +M  +  V PD    T +++L G
Sbjct: 111 MMRAHAAAGRTSDALSLFRAMLGE-GVIPDRVTVTTVLNLPG 151


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/581 (36%), Positives = 324/581 (55%), Gaps = 69/581 (11%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            ISSL SC ++   +   Q+H + +  G   N+ V+N L+ +YA    L +   +F+ M 
Sbjct: 418 LISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP 477

Query: 120 ERDSVSWSVMVGGFSK----VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           E D VSW+ ++G  ++    + + + CF   +   R G +L+  T   V+ A        
Sbjct: 478 EHDQVSWNSIIGALARSERSLPEAVVCFLNAQ---RAGQKLNRITFSSVLSAVSSLSFGE 534

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------------- 222
           +G+ IH + LK+ +  +     AL+  Y KC  +D   ++F +M  R             
Sbjct: 535 LGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY 594

Query: 223 ----------DLVTWTVMIGA--NKFLL------------------------------DV 240
                     DLV + +  G   + F+                               DV
Sbjct: 595 IHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDV 654

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM-LS 299
           ++G+A++DMY+KCG +D A   F+ M  +N  SW++MI+ Y  HGQG++AL LF  M L 
Sbjct: 655 VVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLD 714

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            +  P+ +TFV +L ACSH GL+EEG + F SM D + + P ++H++CM D+LGRAG LD
Sbjct: 715 GQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELD 774

Query: 360 EALKLIESMSVEKDEGLWGALLGAC-RIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           +    IE M ++ +  +W  +LGAC R + +  +L + AA+ L + +P+N  +YVLL N+
Sbjct: 775 KLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNM 834

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           YA  GRW+D+ K R  M    +KK  G++W+ +++ +H F  GD +HP ++ IY+ L  L
Sbjct: 835 YAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKEL 894

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT-HIRIMKNLRV 536
           + K+  AGY+P T F L+D+++E K   L  HSEKLA+AF L A    T  IRIMKNLRV
Sbjct: 895 NRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRV 954

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCHS  K++S I  R II+RD+NRFHHF+ GACSC D+W
Sbjct: 955 CGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 160/375 (42%), Gaps = 73/375 (19%)

Query: 77  RQVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R+VH  ++  G +  ++ + N L+ +YA   ++ DA  +F  M ++DSVSW+ M+ G  +
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQ 392

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
              FI   E ++   R  +   S+TL   + +C   K   +G+ IH   LK G+D++  V
Sbjct: 393 NGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSV 452

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
             AL+ +YA+   +++ R++F  MP  D V+W  +IGA                      
Sbjct: 453 SNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAG 512

Query: 234 ---NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQ 286
              N+     +L       + + G     ++I     + N+     + +A+IA YG  G+
Sbjct: 513 QKLNRITFSSVLSAVSSLSFGELG-----KQIHGLALKNNIADEATTENALIACYGKCGE 567

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL---------------FSS 331
                 +F  M   R   + +T+ S++    H  L+ + L L               +++
Sbjct: 568 MDGCEKIFSRMAERR---DNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYAT 624

Query: 332 MWDDFA-------------------VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           +   FA                   +  DV   + +VD+  + GRLD AL+   +M V +
Sbjct: 625 VLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPV-R 683

Query: 373 DEGLWGALLGACRIH 387
           +   W +++     H
Sbjct: 684 NSYSWNSMISGYARH 698



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 182/440 (41%), Gaps = 80/440 (18%)

Query: 60  PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           P  F+ S +  R     R  H+++       ++ + N L+  Y        A  +F+ M 
Sbjct: 6   PLSFVQSCVGHRG--AARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMP 63

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD--RKDIVMG 177
            R+ VSW+ +V G+S+  +        R+ ++ G+  + Y    V+RAC++     I+ G
Sbjct: 64  LRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFG 123

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAK---------CKVID------------------ 210
           R IH ++ K    +D  V   L+ MY K         C   D                  
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183

Query: 211 -----DARQLFDQM------PTR----DLVTWTV---------------MIGANKFLLDV 240
                 A ++F  M      PT      LVT                   I  +  L D+
Sbjct: 184 AGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDL 243

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +G+ ++  +AK GS+  AR++F++M  +N ++ + ++        G++A  LF M ++S
Sbjct: 244 FVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF-MDMNS 302

Query: 301 RVLPNRITFVSLLYACSHTGLVEE-GLR--------LFSSMWDDFAVRPDVKHYTCMVDL 351
            +  +  ++V LL +     L EE GL+        + ++   DF V         +V++
Sbjct: 303 MIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIG----NGLVNM 358

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK-SLLERQPQNPGH 410
             + G + +A ++   M+ +KD   W +++    + +N    E   +   + R    PG 
Sbjct: 359 YAKCGSIADARRVFYFMT-DKDSVSWNSMITG--LDQNGCFIEAVERYKSMRRHDILPGS 415

Query: 411 YVLLSNVYANAG-RWQDVAK 429
           + L+S++ + A  +W  + +
Sbjct: 416 FTLISSLSSCASLKWAKLGQ 435


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/497 (41%), Positives = 291/497 (58%), Gaps = 35/497 (7%)

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
           A+ +A  +F  M  R+SVSW+ MV GF+   D     E FR       + D+     ++ 
Sbjct: 126 AVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPE---KEDAVLWTAMVS 182

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVC-AALVDMYAKCKVIDDARQLFDQM------ 219
              D     +G ++  I     + +   V   A+V  Y K    DDA +LF  M      
Sbjct: 183 GYMD-----IGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237

Query: 220 -PTRDLVTWTVMIGAN----------------KFLL--DVILGTAVIDMYAKCGSIDSAR 260
            P    ++ +V++G +                K LL  ++ +GT+++ MY KCG + SA 
Sbjct: 238 QPNASTLS-SVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSAC 296

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F  M  ++V++W+AMI+ Y  HG GK+A++LF  M    V PN ITFV +L AC HTG
Sbjct: 297 ILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTG 356

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           L + G++ F  M + + + P V HY+CMVDLL RAG+L+ A+  I SM  E     +G L
Sbjct: 357 LCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTL 416

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L ACR++KN++ AE+AA  L+E+ PQ+ G YV L+N+YA A +W DV+++R  M    + 
Sbjct: 417 LAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVV 476

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K PG++WIE++  +H+F   D  HPQ   I+  L  L+E+++  GY+PD +F LHDVDE 
Sbjct: 477 KTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDET 536

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
           +KV  L  HSEKLAIAFGLI+T  G  +RI KNLRVCGDCH+  K +S I  R II+RD 
Sbjct: 537 MKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDT 596

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF GG CSC DYW
Sbjct: 597 TRFHHFRGGHCSCDDYW 613



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 19/208 (9%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLL------DVIL 242
           +V   +K   +++A+ +F  MP R+ V+W  M+           A ++        D +L
Sbjct: 117 MVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVL 176

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-SSR 301
            TA++  Y   G++  A + F+ M  +N++SW+A++A Y  +     AL LF  M+  + 
Sbjct: 177 WTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN  T  S+L  CS+   +  G ++          R ++   T +V +  + G L  A
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSR-NLTVGTSLVSMYCKCGDLSSA 295

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKN 389
             L   M   +D   W A++     H +
Sbjct: 296 CILFGEMHT-RDVVAWNAMISGYAQHGD 322



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 30/167 (17%)

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
           D AR+LF  MP RD+ +W  M+                   +K G+++ A+ +F  M  +
Sbjct: 97  DGARRLFASMPVRDVASWNTMVSG----------------LSKSGAVEEAKVVFLAMPVR 140

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR---ITFVSLLYACSHTGLVEEGL 326
           N +SW+AM++ +   G    A + F      R  P +   + + +++      G V + +
Sbjct: 141 NSVSWNAMVSGFACSGDMSTAEEWF------RNAPEKEDAVLWTAMVSGYMDIGNVVKAI 194

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
           + F +M     VR ++  +  +V    +    D+AL+L  +M  E +
Sbjct: 195 KYFEAM----PVR-NLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/629 (33%), Positives = 337/629 (53%), Gaps = 106/629 (16%)

Query: 55  TRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           T S  P+  +  + +C+++ +++QVHA +V  G   +  +A ++L + A        +AL
Sbjct: 10  TASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYAL 69

Query: 115 --FNGMKERDSVSWSVMVGGFSKVAD-FINCFETFREFI-RCGMQLDSYTLPFVIRACRD 170
             F+ + ER+  +W+ ++   ++  D  ++    F + +    ++ + +T P V++AC  
Sbjct: 70  SVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAV 129

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFV----------------------------------- 195
              +  G+ +H ++LK GL  D+FV                                   
Sbjct: 130 MARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLV 189

Query: 196 ------------CAALVDMYAKCKVIDDARQLFDQM------------------------ 219
                       C  +VD YA+   +  AR+LFD+M                        
Sbjct: 190 RDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEA 249

Query: 220 --------------PTR----------------DLVTWTVMIGA-NKFLLDVILGTAVID 248
                         P R                +L  W  +    NK  +D +LG+A++D
Sbjct: 250 IEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVD 309

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MYAKCGSI+ A ++F+R+ Q NVI+W+A+I     HG+     +    M    + P+ +T
Sbjct: 310 MYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVT 369

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           ++++L ACSH GLV+EG   F+ M +   ++P ++HY CMVDLLGRAG L+EA +LI +M
Sbjct: 370 YIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNM 429

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            ++ D+ +W ALLGA ++HKN+ +   AA+ L++  P + G YV LSN+YA++G W  VA
Sbjct: 430 PMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVA 489

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
            +R +M    ++K PG +WIE++  IH+F V D +H ++++I+ ML  +S KL L G++P
Sbjct: 490 AVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMP 549

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           DT   L  +DE+ K   L+ HSEK+A+AFGLI+TP  T + I+KNLR+C DCHS +K +S
Sbjct: 550 DTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLIS 609

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  R I++RD  RFHHFE G+CSC DYW
Sbjct: 610 KMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 316/581 (54%), Gaps = 76/581 (13%)

Query: 58  VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           +DP+FF +           + +H  +V  G    LI+ N L+  Y     + +A  +F  
Sbjct: 373 LDPEFFTNG----------KILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQR 422

Query: 118 MKERDSVSWSVMVGGFSKVADF---INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           M + D V+W+ ++GGF+  A+    +  F+  RE    G  +D  T+  ++ +C   +D+
Sbjct: 423 MPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSG--VDYITIVNILGSCLTHEDL 480

Query: 175 V-MGRLIHDIVLKSGLDIDQFVCAALV-------DMYAKCKVID---------------- 210
           +  G  IH   + +G D+DQ V ++L+       D+++   + D                
Sbjct: 481 IKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAA 540

Query: 211 --------DARQL----------FDQM----------------PTRDLVTWTVMIGANKF 236
                   +A +L          FDQ                   + L   T+ +G   F
Sbjct: 541 NARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLG---F 597

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
            LD  +  A +DMY KCG +D A  I  +   ++ +SW+ +I+    HGQ  KA + F  
Sbjct: 598 ELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHD 657

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           ML   V PN ++FV LL ACSH GLV+EGL  ++SM   + ++P ++H  CM+DLLGR+G
Sbjct: 658 MLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSG 717

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           RL EA   I  M +  ++ +W +LL +CRI++N+DL   AAK LLE  P +   YVL SN
Sbjct: 718 RLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSN 777

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           V+A  GRW+DV  +R  M   +++K P  +W++ +  I  F +GD THPQ E+I   L+ 
Sbjct: 778 VFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLG 837

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           L + +  AGY+PDT++ L D DEE K  N++SHSE++A+AFGLI  PEG+ +RI KNLRV
Sbjct: 838 LMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRV 897

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCHSF K VS +  R I++RD  RFHHF  G CSC DYW
Sbjct: 898 CGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 172/399 (43%), Gaps = 64/399 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH   V  G  +N+ + N LL +Y+      DA  +F  M ERD +SW+ M+  + + 
Sbjct: 281 KGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQD 340

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +   + F E +    +++  T    + AC D +    G+++H  V+  GL  +  + 
Sbjct: 341 GRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIG 400

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDV-------------- 240
             L+  Y KC  + +A+++F +MP  D VTW  +IG  AN   L+               
Sbjct: 401 NTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTS 460

Query: 241 ---------ILGTAV-------------------------------IDMYAKCGSIDSAR 260
                    ILG+ +                               I MYAKCG + S+ 
Sbjct: 461 GVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSS 520

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            IFD++  K    W+A+IAA   +G G++AL L   M S+ +  ++  F + L   +   
Sbjct: 521 YIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLA 580

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           ++EEG +L  S      +  ++ H+     +D+ G+ G LD+AL+++     ++    W 
Sbjct: 581 MLEEGQQLHGST---IKLGFELDHFIINAAMDMYGKCGELDDALRILPQ-PTDRSRLSWN 636

Query: 379 ALLGACRIHKNVDLAEMAAKSLLER--QPQNPGHYVLLS 415
            L+     H     A+     +L+   +P +     LLS
Sbjct: 637 TLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLS 675



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 182/433 (42%), Gaps = 74/433 (17%)

Query: 62  FFISSLLSCRNIFQIR-----QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           F I+SL++  N   I      Q H   +  G + ++ V    ++ YA +  +++A  +FN
Sbjct: 59  FMIASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFN 118

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            M +R+ VSW+ ++  +S          T++     G+  +   +  VI +C    DI++
Sbjct: 119 EMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIIL 178

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN-- 234
           G  +    LK GL+       +L+ M+  C  I++A  +F++M  RD ++W  +I AN  
Sbjct: 179 GHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQ 238

Query: 235 --------------KFLLDVILGTAVIDMYAKCGSID----------------------- 257
                         + + + I  T +  + + CGS+D                       
Sbjct: 239 NTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICL 298

Query: 258 ---------------SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
                           A  IF RM ++++ISW++M+A Y   G+   AL +F  ML  + 
Sbjct: 299 CNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKK 358

Query: 303 LPNRITFVSLLYACSH-----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
             N +TF S L AC        G +  G  +   + D+  +         ++   G+  +
Sbjct: 359 EINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIG------NTLITFYGKCHK 412

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG-HYVLLSN 416
           + EA K+ + M  + D+  W AL+G      N +L E  A   L R+    G  Y+ + N
Sbjct: 413 MAEAKKVFQRMP-KLDKVTWNALIGG--FANNAELNEAVAAFKLMREGSTSGVDYITIVN 469

Query: 417 VYANAGRWQDVAK 429
           +  +    +D+ K
Sbjct: 470 ILGSCLTHEDLIK 482



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 149/348 (42%), Gaps = 70/348 (20%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y+    +  A  +F+ M ER+  SW+ M+ G+ +V  ++     FR+    G++   + 
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 161 LPFVIRACRDRKDIVM---GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
           +  ++ AC   K  +M   G   H   +K GL  D FV  + V  YA   ++ +A+++F+
Sbjct: 61  IASLVTAC--NKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFN 118

Query: 218 QMPTRDLVTWT-----------------------------------VMIGANKFLLDVIL 242
           +MP R++V+WT                                   ++I +  FL+D+IL
Sbjct: 119 EMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIIL 178

Query: 243 G-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           G                    ++I M+  CG I+ A  IF+ M +++ ISW+++I+A   
Sbjct: 179 GHQLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQ 238

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           +   +++   F  M       N  T   LL  C     ++ G  +        AV+  ++
Sbjct: 239 NTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHG-----LAVKYGLE 293

Query: 344 HYTCMVDLL----GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
              C+ + L      AGR  +A  +   M  E+D   W ++L AC + 
Sbjct: 294 SNICLCNTLLSVYSDAGRSKDAELIFRRMP-ERDLISWNSML-ACYVQ 339


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/557 (35%), Positives = 309/557 (55%), Gaps = 54/557 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            ++++H   +    + + ++AN  +  YA   +L+ A  +F+G++ +   SW+ ++GG++
Sbjct: 397 SLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYA 456

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           + +D     +   +    G+  D++T+  ++ AC   K + +G+ +H  ++++ L+ D F
Sbjct: 457 QSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLF 516

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI----------------------- 231
           V  +++ +Y  C  +   + LFD M    LV+W  +I                       
Sbjct: 517 VYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYG 576

Query: 232 ------------GANKFLLDVILG-------------------TAVIDMYAKCGSIDSAR 260
                       GA   L  + LG                    ++IDMYAK G+I  + 
Sbjct: 577 IQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSS 636

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++F+ +++K+  SW+AMI  YG HG+ K+A+ LF  M  +   P+ +TF+ +L AC+H+G
Sbjct: 637 KVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSG 696

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           L+ EGLR    M   F ++P++KHY C++D+LGRAG+LD AL++   MS E D G+W +L
Sbjct: 697 LLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSL 756

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L  CRIH+N+++ E  A  L   +P+ P +YVLLSN+YA  G+W DV ++R  M    L+
Sbjct: 757 LSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLR 816

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G +WIE+  K+  F VG+      EEI  +   L  K+   GY PDT+   HD+ EE
Sbjct: 817 KDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEE 876

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K+  L  HSEKLAI +GLI T EGT +R+ KNLR+C DCH+  K +S +  R I+VRD 
Sbjct: 877 EKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 936

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF  G CSC DYW
Sbjct: 937 KRFHHFNKGFCSCGDYW 953



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 139/293 (47%), Gaps = 48/293 (16%)

Query: 71  RNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           ++I   R++H  +V+G T   ++ ++  +++ +YA+  +  D+ + F+ ++ ++   W+ 
Sbjct: 98  KDIEMGRKIH-HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNA 156

Query: 129 MVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           ++  +S+   +    E F + I +  +  D++T P VI+AC    D+ +G  +H +V+K+
Sbjct: 157 VISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKT 216

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------- 231
           GL  D FV  ALV  Y     + DA +LFD MP R+LV+W  MI                
Sbjct: 217 GLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGDDGAFMPDV 276

Query: 232 ------------------------GANKFLLD--VILGTAVIDMYAKCGSIDSAREIFDR 265
                                    A K  LD  +++  A++DMY+K G I  ++ IF  
Sbjct: 277 ATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKL 336

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYAC 316
              KNV+SW+ M+  +   G      DL   ML  S  V  + +T ++ +  C
Sbjct: 337 NNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 108/508 (21%), Positives = 192/508 (37%), Gaps = 105/508 (20%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R I   + VH   V       L+V N L+ +Y+    + D+  +F     ++ VSW+ MV
Sbjct: 290 REIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMV 349

Query: 131 GGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           GGFS   D    F+  R+ +     ++ D  T+   +  C D   +   + +H   LK  
Sbjct: 350 GGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQE 409

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------NKFLLDVIL 242
              D+ +  A V  YAKC  +  A+++F  + ++ L +W  +IG        +  LD  L
Sbjct: 410 FVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHL 469

Query: 243 ----------GTAVIDMYAKCGSIDSAR-------------------------------- 260
                        V  + + C  + S R                                
Sbjct: 470 QMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 529

Query: 261 ------EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                  +FD M   +++SW+ +I  +  +G  ++AL LF  M+   + P  I+ +++  
Sbjct: 530 ELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFG 589

Query: 315 ACS-----------HT----GLVEEGLRLFSSMWDDFAVRPDVKH--------------- 344
           ACS           H      L+E+   +  S+ D +A    +                 
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 345 YTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACR----IHKNVDLAEMAA 397
           +  M+   G  GR  EA+KL E M       D+  +  +L AC     +H+ +   +   
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQ-M 708

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ- 456
           KS    +P N  HY  + ++   AG+  +  ++   M+      +  W  +    +IHQ 
Sbjct: 709 KSSFGLKP-NLKHYACVIDMLGRAGQLDNALRVAAEMSEE--PDVGIWNSLLSWCRIHQN 765

Query: 457 FSVGDST-------HPQSEEIYRMLVTL 477
             +G+          P+  E Y +L  L
Sbjct: 766 LEMGEKVAAKLFVLEPEKPENYVLLSNL 793



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 13/156 (8%)

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
           G+ +   D +L T +I MYA CGS D +R  FD +R KN+  W+A+I++Y  +    + L
Sbjct: 112 GSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVL 171

Query: 292 DLFPMMLS-SRVLPNRITFVSLLYACS-----HTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           ++F  M+S + +LP+  TF  ++ AC+       GL   GL + + + +D  V       
Sbjct: 172 EMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVG------ 225

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             +V   G  G + +ALKL + M  E++   W +++
Sbjct: 226 NALVSFYGTHGFVSDALKLFDIMP-ERNLVSWNSMI 260



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 84/214 (39%), Gaps = 68/214 (31%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
            L  +++A   RKDI MGR IH +V  S  L  D  +C  ++ MYA C   DD+R  FD 
Sbjct: 86  ALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDA 145

Query: 219 MPTRDLVTWTVMIGA-------------------------NKFLL-----------DVIL 242
           + +++L  W  +I +                         + F             DV +
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGI 205

Query: 243 GTAV-------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           G AV                   +  Y   G +  A ++FD M ++N++SW++MI  +  
Sbjct: 206 GLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSD 265

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           +G                 +P+  T V++L  C+
Sbjct: 266 NGD------------DGAFMPDVATVVTVLPVCA 287


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 299/541 (55%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++ N ++      K + +A ALF  ++ERDS++W+ MV G ++        + FR   
Sbjct: 210 NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMR 269

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+ +D YT   ++ AC     +  G+ IH  + ++  + + FV +ALVDMY+KC+ + 
Sbjct: 270 AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVR 329

Query: 211 DARQLFDQMPTRDLVTWTVM------------------------IGANKFLLD------- 239
            A  +F +M  +++++WT M                        I  + F L        
Sbjct: 330 LAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCA 389

Query: 240 -----------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
                                  V +  A++ +Y KCGSI+ A  +FD M   + +SW+A
Sbjct: 390 NLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 449

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           ++  Y   G+ K+ +DLF  MLS  V P+ +TF+ +L ACS +GLV++G   F SM  D 
Sbjct: 450 LVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDH 509

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  R+G L +A + I+ M    D   W  LL ACR+  ++++ + A
Sbjct: 510 DIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWA 569

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A++LL+  PQNP  YVLL +++A+ G W DVAK+R  M  R++KK PG +WI+ +NK+H 
Sbjct: 570 AENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHI 629

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D +HP S  IY  L  L+ K+   GY PD +  LHDV +  KV  L  HSEKLAIA
Sbjct: 630 FSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIA 689

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGLI  P    IRI+KNLRVC DCH+  K +S IT R I+VRDA RFH F  G CSC D+
Sbjct: 690 FGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDF 749

Query: 577 W 577
           W
Sbjct: 750 W 750



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 172/384 (44%), Gaps = 58/384 (15%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL+  N LL   A    + D   LF  + +RD+VS++ ++ GFS+          +   +
Sbjct: 76  NLVTGNSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALL 135

Query: 151 R--CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
           R   G++    T+  V+       D  +GR +H  +L+ G     F  + LVDMYAK   
Sbjct: 136 RDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGP 195

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           I DAR++FD+M  +++V    MI            T ++    +C  +  AR +F+ + +
Sbjct: 196 IGDARRVFDEMEGKNVVMCNTMI------------TGLL----RCKMVAEARALFEAIEE 239

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           ++ I+W+ M+     +G   +ALD+F  M +  V  ++ TF S+L AC     +EEG ++
Sbjct: 240 RDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQI 299

Query: 329 F---------------SSMWDDF----AVR-----------PDVKHYTCMVDLLGRAGRL 358
                           S++ D +    +VR            ++  +T M+   G+ G  
Sbjct: 300 HAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCG 359

Query: 359 DEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           +EA+++   M    ++ D+   G+++ +C    N+   E  A+            YV +S
Sbjct: 360 EEAVRVFSEMQRDGIKPDDFTLGSVISSC---ANLASLEEGAQFHCLALVSGLRPYVTVS 416

Query: 416 N----VYANAGRWQDVAKIRDLMT 435
           N    +Y   G  +D  ++ D M+
Sbjct: 417 NALVTLYGKCGSIEDAHRLFDEMS 440



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 61/129 (47%), Gaps = 18/129 (13%)

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           ++   L+  YA   ++  AR++FD MP R+LVT                G +++   A+ 
Sbjct: 47  YLLNTLLTAYASSGLLPHARRVFDAMPGRNLVT----------------GNSLLSALARA 90

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVS 311
           G +     +F  + Q++ +S++A++A +   G   +A   +  +L   + V P+RIT   
Sbjct: 91  GLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSG 150

Query: 312 LLYACSHTG 320
           ++   S  G
Sbjct: 151 VVMVASALG 159


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/518 (38%), Positives = 303/518 (58%), Gaps = 25/518 (4%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           SSL +C  +   R +HA         +  VA  LL +YA       A ALF+ M +   V
Sbjct: 138 SSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVV 197

Query: 125 SWSVMVGGFSKVADFINCFETF-----REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             + M+  ++K+    +  E F     ++FI     +D YT     +  R  + + + R 
Sbjct: 198 PVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT-----QHGRPNEALRLFRW 252

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           +    L+SG+D D+      +   A+    +  R L   +             + +  L+
Sbjct: 253 M----LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKN-----------SRRVQLN 297

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
             +GTA+IDMY KCGS++ A  +F+ +  K+++ W+AMI  Y  HG  +KAL++F  + S
Sbjct: 298 ARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRS 357

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             + P  ITF+ LL ACSH+GLV+EG + F SM +++A+ P ++HY CMVDLLGRAG ++
Sbjct: 358 QGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIE 417

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA  L++SM++  D  +W +LL ACR+HKN+ L +  A  L+     N G Y+LLSN+YA
Sbjct: 418 EAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYA 477

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
             G W++VA++R +M    ++K PG + IEV  K+++F  GD +HP+++EIY ML  ++ 
Sbjct: 478 AVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNG 537

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
            ++  G++P T   LHD+DE  K   L  HSEKLA+AFGLI+T  G  I+I+KNLR C D
Sbjct: 538 IVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACAD 597

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CH+ +K +S IT R I+ RD NRFHHF  G+C+C DYW
Sbjct: 598 CHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/518 (38%), Positives = 303/518 (58%), Gaps = 25/518 (4%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           SSL +C  +   R +HA         +  VA  LL +YA       A ALF+ M +   V
Sbjct: 137 SSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVV 196

Query: 125 SWSVMVGGFSKVADFINCFETF-----REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             + M+  ++K+    +  E F     ++FI     +D YT     +  R  + + + R 
Sbjct: 197 PVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT-----QHGRPNEALRLFRW 251

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           +    L+SG+D D+      +   A+    +  R L   +             + +  L+
Sbjct: 252 M----LRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKN-----------SRRVQLN 296

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
             +GTA+IDMY KCGS++ A  +F+ +  K+++ W+AMI  Y  HG  +KAL++F  + S
Sbjct: 297 ARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRS 356

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             + P  ITF+ LL ACSH+GLV+EG + F SM +++A+ P ++HY CMVDLLGRAG ++
Sbjct: 357 QGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIE 416

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA  L++SM++  D  +W +LL ACR+HKN+ L +  A  L+     N G Y+LLSN+YA
Sbjct: 417 EAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNIYA 476

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
             G W++VA++R +M    ++K PG + IEV  K+++F  GD +HP+++EIY ML  ++ 
Sbjct: 477 AVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLEKMNG 536

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
            ++  G++P T   LHD+DE  K   L  HSEKLA+AFGLI+T  G  I+I+KNLR C D
Sbjct: 537 IVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKIVKNLRACAD 596

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CH+ +K +S IT R I+ RD NRFHHF  G+C+C DYW
Sbjct: 597 CHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/503 (38%), Positives = 296/503 (58%), Gaps = 20/503 (3%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H  ++  G   +  V + L+ +Y      ++   +FN M E D  + + +V G S+  
Sbjct: 231 QIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNG 290

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              N  E F++F   GM L+  +   +I +C ++ KD+    L  ++ ++ G+  +    
Sbjct: 291 LVDNALEVFKQFK--GMDLNVVSWTSMIASCSQNGKDMEALELFREMQIE-GVKPNSVTI 347

Query: 197 AALVDMYAKCKVI--DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
             L+        +    A   F                 N    DV +G+A+IDMYAKCG
Sbjct: 348 PCLLPACGNIAALLHGKAAHCFSL--------------RNGIFNDVYVGSALIDMYAKCG 393

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            + ++R  FD M  +N++SW++++A Y  HG+  +A+++F +M      P+ ++F  +L 
Sbjct: 394 RMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLS 453

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC+  GL EEG   F SM  +  V   ++HY+CMV LLGR+GRL+EA  +I+ M  E D 
Sbjct: 454 ACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDS 513

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +WGALL +CR+H  VDL E+AAK + E +P+NPG+Y+LLSN+YA+   W +V  +RD+M
Sbjct: 514 CVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMM 573

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             R LKK PG++WIE++NK+H    GDS+HPQ  +I   L  L+ +++ +GY+P T+F L
Sbjct: 574 RSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVL 633

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            DV+E+ K   L  HSEKLA+  GL+ T  G  ++++KNLR+C DCH+ IK +S   +R 
Sbjct: 634 QDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKRE 693

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I VRD NRFH F+GG CSC DYW
Sbjct: 694 IFVRDTNRFHQFKGGVCSCGDYW 716



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 66/376 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----------------- 119
           +Q+H   +  G   + +V + LL++Y     L DA  +F+ +                  
Sbjct: 94  KQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARK 153

Query: 120 ------------------ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
                             E + VSW+ M+ GF++   +++    F+     G++ D  ++
Sbjct: 154 GRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSV 213

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
             V+ A  D    +MG  IH  V+K GL  D+FV +AL+DMY KC    +   +F++M  
Sbjct: 214 SSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDE 273

Query: 222 RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR--QKNVISWSAMIA 279
                           +DV    A++   ++ G +D+A E+F + +    NV+SW++MIA
Sbjct: 274 ----------------VDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIA 317

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-----LRLFSSMWD 334
           +   +G+  +AL+LF  M    V PN +T   LL AC +   +  G       L + +++
Sbjct: 318 SCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFN 377

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D  V       + ++D+  + GR+  A +L   M   ++   W +L+    +H       
Sbjct: 378 DVYVG------SALIDMYAKCGRM-LASRLCFDMMPNRNLVSWNSLMAGYAMHGKT-FEA 429

Query: 395 MAAKSLLERQPQNPGH 410
           +    L++R  Q P H
Sbjct: 430 INIFELMQRCGQKPDH 445



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 129/283 (45%), Gaps = 26/283 (9%)

Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
           A   +L+ AHA    +K   S+  ++ +  FSK+  F +    F   +  G+  DS  LP
Sbjct: 23  ATKASLSQAHAHI--LKTGISLPETIQI--FSKLNHFGHVIRVFSYMLTQGIVPDSRVLP 78

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
            VI+ C     +  G+ +H   L SGL +D  V ++L+ MY +   + DAR +FD++P  
Sbjct: 79  TVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQP 138

Query: 223 DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNVISWSAMI 278
            +VT                 +A+I  +A+ G +   +E+F + R    + N++SW+ MI
Sbjct: 139 GVVT----------------SSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMI 182

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           + +   G    A+ +F  M    + P+  +  S+L A     +   G+++   +     +
Sbjct: 183 SGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQ-GL 241

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            PD    + ++D+ G+     E   +   M  E D G   AL+
Sbjct: 242 GPDKFVVSALIDMYGKCACASEMSGVFNEMD-EVDVGACNALV 283



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 11/185 (5%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C NI  +   +  H   +  G   ++ V + L+ +YA    +  +   F+ M  R+ 
Sbjct: 351 LPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNL 410

Query: 124 VSWSVMVGGFS---KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           VSW+ ++ G++   K  + IN FE  +   RCG + D  +   V+ AC        G   
Sbjct: 411 VSWNSLMAGYAMHGKTFEAINIFELMQ---RCGQKPDHVSFTCVLSACTQGGLTEEGWFY 467

Query: 181 HDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLL 238
            D + ++ G++      + +V +  +   +++A  +  QMP   D   W  ++ + +   
Sbjct: 468 FDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHN 527

Query: 239 DVILG 243
            V LG
Sbjct: 528 RVDLG 532


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/597 (35%), Positives = 328/597 (54%), Gaps = 94/597 (15%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNL---IVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           +++ ++ Q+HA I+    L +    ++  KL   YA H  +  + ALF+   + D   ++
Sbjct: 40  QSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 99

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
             +   S        F  + + +   +  + +T   ++++C  +     G+LIH  VLK 
Sbjct: 100 AAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKF 155

Query: 188 GLDIDQFVCAALVDMYAKC-------KVID------------------------DARQLF 216
           GL ID +V   LVD+YAK        KV D                         AR LF
Sbjct: 156 GLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALF 215

Query: 217 DQMPTRDLVTWTVM------------------------------------------IGA- 233
           D M  RD+V+W VM                                          IGA 
Sbjct: 216 DSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGAL 275

Query: 234 ------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                       ++  L+V + T +IDMY+KCGS++ A  +F+   +K++++W+AMIA Y
Sbjct: 276 ETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGY 335

Query: 282 GYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
             HG  + AL LF  M   + + P  ITF+  L AC+H GLV EG+R+F SM  ++ ++P
Sbjct: 336 AMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            ++HY C+V LLGRAG+L  A + I++M+++ D  LW ++LG+C++H +  L +  A+ L
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYL 455

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           +    +N G YVLLSN+YA+ G ++ VAK+R+LM  + + K PG + IE+ENK+H+F  G
Sbjct: 456 IGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAG 515

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D  H +S+EIY ML  +SE+++  GY+P+TN  L D++E  K  +L  HSE+LAIA+GLI
Sbjct: 516 DREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLI 575

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +T  G+ ++I KNLRVC DCH+  K +S IT R I++RD NRFHHF  G+CSC D+W
Sbjct: 576 STKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 311/599 (51%), Gaps = 77/599 (12%)

Query: 56  RSVDPKFFISSLLSCRNI---FQIRQVHAQIVAGGTLTNLIVANKLLYIY----ALH--- 105
           RS  P    ++L SC  +        +HA  +  G+  +   AN LL +       H   
Sbjct: 45  RSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPF 104

Query: 106 -------------KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
                         A      +F+ M ERD+VSW+ ++ G ++           RE  R 
Sbjct: 105 GTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRD 164

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G   D++TL  V+    +  DI  G ++H   +K+G D D FV ++L+DMYA C  +D +
Sbjct: 165 GFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYS 224

Query: 213 RQLFDQMPTRDLV-----------------------------------TWTVMIGA---- 233
            ++FD     D V                                   T++ +I A    
Sbjct: 225 MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNL 284

Query: 234 ---------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                           +F  ++ + +++IDMY KCG++D AR +F+ ++  +++SW+AMI
Sbjct: 285 SLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMI 344

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
             Y  HG   +A  LF  M    V PN ITF+++L ACSH GLV+ G + F+SM + +  
Sbjct: 345 MGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGF 404

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P ++H   + D LGRAG LDEA   I  M ++    +W  LL ACR+HKN  LAE  AK
Sbjct: 405 VPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAK 464

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            + E +P++ G +V+LSN+Y+ +GRW + A++R  M  + +KK P  +WIEV+NK+H F 
Sbjct: 465 KIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFI 524

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
             D +HP  + I   L   SE++   GY+P+    L D++EE K   L  HSEKLAI FG
Sbjct: 525 AHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFG 584

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +I+TP GT IR+MKNLRVC DCH   K +S I  R I+VRD NRFH F+ G CSC D+W
Sbjct: 585 IISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/522 (39%), Positives = 297/522 (56%), Gaps = 23/522 (4%)

Query: 63  FISSLLSCRNI--FQI-RQVHAQIVAGGTLTN----LIVANKLLYIYALHKALTDAHALF 115
           + + + +C N+  FQ+ +Q+HA I+      N    L V+N L+ +Y  +  + +A  +F
Sbjct: 292 YTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             M  R+ ++W+ ++ G+          E  + F       +  TL  +I          
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRM----EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGD 407

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
            G  +   +   G +   F  A  +   +    +++ RQL  Q+         V +G   
Sbjct: 408 EGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQL---------VHLGYES 458

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
            L    +G A+I MYAKCG +++A  +F  M   +++SW++MIAA G HG G KA++LF 
Sbjct: 459 SL---SVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFD 515

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            ML   V P+RITF+++L ACSH GLVE+G   F+SM + + + P   HY  MVDL  RA
Sbjct: 516 QMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRA 575

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G    A  +I+SM  +    +W ALL  CRIH N+DL   AA+ L +  PQN G YVLLS
Sbjct: 576 GMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLS 635

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA+ GRW DVAK+R LM  + ++K P  +WIEVENK+H F V D  HP+   +YR L 
Sbjct: 636 NIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLE 695

Query: 476 TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
            L  +++  GYIPDT F LHD++ E K   L +HSEKLA+ FG++  P    +R+ KN+R
Sbjct: 696 QLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIR 755

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +CGDCH+  K +S + RR IIVRD  RFHHF+ G CSCRDYW
Sbjct: 756 ICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 168/369 (45%), Gaps = 58/369 (15%)

Query: 63  FISSLLS--CR--NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG- 117
           F++ LL   C+  N+   RQ+  +I       + I    L+  Y     L     +FNG 
Sbjct: 50  FLNRLLEMYCKSSNVVYARQLFEEIPN----PDAIARTTLITAYCALGNLELGREIFNGT 105

Query: 118 -MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +  RDSV ++ M+ G++   D  +  E FR   R   + D +T   V+ A      + +
Sbjct: 106 PLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALV----LFV 161

Query: 177 GR-----LIHDIVLKSGLD-IDQFVCAALVDMYAK--------CKVIDDARQLFDQMPTR 222
           G       +H  V+K+G+  +   V  AL+ +Y K        C  +  AR+LFD+MP R
Sbjct: 162 GNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKR 221

Query: 223 DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
           D +TWT MI                  Y +   ++ ARE+F+ M +    +W+AMI+ Y 
Sbjct: 222 DELTWTTMITG----------------YVRNDDLNGAREVFEAMVENLGAAWNAMISGYV 265

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           + G  ++AL L   M    +  + IT+ +++ AC++ G  + G ++ + +  +  + P+ 
Sbjct: 266 HCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKN-ELNPN- 323

Query: 343 KHYTC------MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            H  C      ++ L  +  ++DEA K+  +M V ++   W A+L     + N    E  
Sbjct: 324 -HSFCLSVSNALITLYCKNNKVDEARKIFYAMPV-RNIITWNAILSG---YVNAGRME-E 377

Query: 397 AKSLLERQP 405
           AKS  E  P
Sbjct: 378 AKSFFEEMP 386



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 18/149 (12%)

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
           +D     + R +H  ++ SG          L++MY K   +  ARQLF+++P  D +  T
Sbjct: 24  QDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIART 83

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD--RMRQKNVISWSAMIAAYGYHGQ 286
            +I A                Y   G+++  REIF+   +  ++ + ++AMI  Y ++G 
Sbjct: 84  TLITA----------------YCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGD 127

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           G  AL+LF  M      P+  TF S+L A
Sbjct: 128 GHSALELFRAMRRDDFRPDDFTFTSVLSA 156


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/572 (36%), Positives = 311/572 (54%), Gaps = 71/572 (12%)

Query: 12  SISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR 71
           S++  LR  +SS    IAL  H     P          PD   T +  P      L +C 
Sbjct: 90  SLNTVLRIAASSAHPRIALALHRRRLAP----------PD---THTYPPL-----LQACT 131

Query: 72  NIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSW 126
            +  +R+   +HA+    G +  + V N L++ Y        AH +F+ +   ER+ VSW
Sbjct: 132 RLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSW 191

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           + ++ GF+           FRE +   +  D +T+  V+ AC +   + +GR +H    K
Sbjct: 192 NSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASK 251

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
            GL  +  V                                               G A+
Sbjct: 252 VGLVGNSHV-----------------------------------------------GNAL 264

Query: 247 IDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ID+YAKCG ++ A ++F+ M   + V+SW+++I     +G GK AL+LF +M   R++P 
Sbjct: 265 IDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPT 324

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            IT V +LYACSH GLV++G R F+ M D + + P ++H  CMVDLLGRAGR++EA   I
Sbjct: 325 DITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYI 384

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            +M VE +  +W  LLGAC +HK ++L E A   L+E  P + G YVLLSN+YA  GRW 
Sbjct: 385 TTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWA 444

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           D   +R  M    ++K PG + +E+ N +++F +GD +HP+S++IY+ L  ++E+L   G
Sbjct: 445 DAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQG 504

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+P T+  L D++EE K   L  HSE+LAIAF L+ +  G+ IRI+KNLR+CGDCH  IK
Sbjct: 505 YVPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIK 564

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S +  R IIVRD +RFHHF+GG CSC+DYW
Sbjct: 565 LISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/503 (38%), Positives = 284/503 (56%), Gaps = 54/503 (10%)

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+ G+    D     E F    + G + D  TL    +AC     +  G+ IH   +K+G
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---------------- 232
            D D  V + ++DMY KC  + +A  +F+ +   D V WT MI                 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 233 ----------------------------------ANKFLLDVI----LGTAVIDMYAKCG 254
                                             AN   LD +    +GT+++DMYAKCG
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 180

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
           +I+ A  +F +M  +N+  W+AM+     HG  ++A++LF  M S  + P+R++F+ +L 
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH GL  E      SM +D+ + P+++HY+C+VD LGRAG + EA K+IE+M  +   
Sbjct: 241 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 300

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +  ALLGACRI  +V+  +  A  L   +P +   YVLLSN+YA A RW DV   R +M
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 360

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
            R+ +KK PG++WI+V+N +H F V D +HPQ++ IY  +  + + +   GY+PDT F L
Sbjct: 361 KRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVL 420

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            DV++E K  +LY HSEKLAIA+GLI+TP  T IR++KNLRVCGDCH+ IK++S +  R 
Sbjct: 421 LDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFERE 480

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I++RDANRFHHF  G CSC DYW
Sbjct: 481 IVLRDANRFHHFRDGVCSCGDYW 503



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 79/176 (44%), Gaps = 6/176 (3%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q RQ+HA ++    +++  V   L+ +YA    + DA+ LF  M  R+   W+ M+ G +
Sbjct: 149 QGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLA 208

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGL--DI 191
           +  +       F+     G++ D  +   ++ AC            +H +    G+  +I
Sbjct: 209 QHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEI 268

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAV 246
           + + C  LVD   +  ++ +A ++ + MP +   +    ++GA +   DV  G  V
Sbjct: 269 EHYSC--LVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRV 322


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/565 (38%), Positives = 313/565 (55%), Gaps = 60/565 (10%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           I Q R++H      G L N++V   ++ +Y     L DA A F  ++ ++SV+W+ M+  
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 133 FSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           +          E FRE        + D ++    I AC + +D+  GR IH+++ + G +
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKE 166

Query: 191 I--DQFVCAALVDMYAKC-------KVIDDARQLFDQM---------------------- 219
           +  D  V  AL++MY+KC       KV D  R   D +                      
Sbjct: 167 LHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 220 ----PTRDLV----TWTVMIG-------------------ANKFLLDVILGTAVIDMYAK 252
                T DL     T+  +I                    A  F  ++++  A++ MY K
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGK 286

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG +D A ++F  M+ K+ ISW+ +I++Y YHG   +AL L+  M    V P  +TFV L
Sbjct: 287 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 346

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACSH GLV +GL  F  M DD  ++P V H+ C++DLLGR GRL EA  +++SM ++ 
Sbjct: 347 LSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQA 406

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           +   W +LLGAC+ H ++     AA  +++R P   G YVLLSN+YA AGRW+DV KIR 
Sbjct: 407 NAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRK 466

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
           +M  R +KK PG +WIE+ + +H+F  GD +HPQ EEIY  L  + E+++  GY+PDT+ 
Sbjct: 467 IMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSS 526

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
             HD++EE K   L  HSEKLAI +G +  P  + +RI+KNLRVC DCH+  K +S IT 
Sbjct: 527 VFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITG 586

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I+VRDA RFH FE G+CSCRDYW
Sbjct: 587 RKIVVRDAARFHLFENGSCSCRDYW 611



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 72/314 (22%)

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKD--IVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           FR   + G + D  T   ++ A        I  GR IH     SGL  +  V  A++ MY
Sbjct: 17  FRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMY 76

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF--------------------------- 236
            KC  +DDAR  F+++  ++ VTW  M+   K                            
Sbjct: 77  GKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFS 136

Query: 237 ----------LLDVILGTAVIDMYAKCGS---------------------IDSAREIFDR 265
                     L D+  G  + +M  + G                      ++ AR++FD 
Sbjct: 137 FSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDS 196

Query: 266 MRQ-KNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           +R   + + W+AMIAAY  HG+GK+ALDL+  M  ++ + P + TFV+++  C+    ++
Sbjct: 197 IRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALK 256

Query: 324 EG----LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           +G     R+ ++ +D      ++     +V + G+ G LDEAL +  SM + KDE  W  
Sbjct: 257 QGRAIHARVRATNFD-----ANLLVSNALVHMYGKCGCLDEALDVFHSMKL-KDEISWNT 310

Query: 380 LLGACRIHKNVDLA 393
           ++ +   H + D A
Sbjct: 311 IISSYAYHGHSDQA 324



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 93/205 (45%), Gaps = 15/205 (7%)

Query: 55  TRSVDPK--FFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           T  + PK   F++ +  C  +  ++Q   +HA++ A     NL+V+N L+++Y     L 
Sbjct: 232 TTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLD 291

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           +A  +F+ MK +D +SW+ ++  ++           ++E    G++    T   ++ AC 
Sbjct: 292 EALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS 351

Query: 170 DRKDIVMG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-D 223
               +  G     R+  D  +K    +  F C  ++D+  +   + +A  +   MP + +
Sbjct: 352 HGGLVADGLDYFYRMQDDHRIKP--SVPHFGC--IIDLLGRGGRLAEAELVLKSMPIQAN 407

Query: 224 LVTWTVMIGANKFLLDVILGTAVID 248
            V W  ++GA K   D+  G    D
Sbjct: 408 AVQWMSLLGACKTHGDLKRGVRAAD 432


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/540 (38%), Positives = 310/540 (57%), Gaps = 52/540 (9%)

Query: 60  PKFFISSLL--SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           P  F+ S L  +C N+  I   RQVH   +      + +V + L+ +YA    L  A A+
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFR---------------EFIRCGMQLDSY 159
           F+ ++ ++++SW+ MV G++K        E FR                F++ G  L+++
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAF 222

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           ++   +R  R+R DI                +D  V +++V   A        RQ+    
Sbjct: 223 SVFTEMR--RERVDI----------------LDPLVLSSIVGACANLAASIAGRQVHG-- 262

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                     ++ A  F   V +  A+IDMYAKC  + +A++IF RMR ++V+SW+++I 
Sbjct: 263 ----------LVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIV 312

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
               HGQ +KAL L+  M+S  V PN +TFV L+YACSH G VE+G  LF SM  D+ +R
Sbjct: 313 GMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIR 372

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HYTC++DLLGR+G LDEA  LI +M    DE  W ALL AC+      +    A  
Sbjct: 373 PSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADH 432

Query: 400 LLER-QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
           L+   + ++P  Y+LLSN+YA+A  W  V++ R  +    ++K PG + +EV  +   F 
Sbjct: 433 LVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFY 492

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
            G+++HP  E+I+R+L  L E++ +  GY+PDT++ LHD+DE+ K   L+ HSE+ A+A+
Sbjct: 493 AGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAY 552

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           GL+    GT IRI+KNLRVCGDCH  +KH+S IT R IIVRDA R+HHF+GG CSC D+W
Sbjct: 553 GLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/568 (35%), Positives = 306/568 (53%), Gaps = 54/568 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +S+  + R+    RQ H   V  G      V N +LY+Y     + DA  +F  +   D+
Sbjct: 115 VSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDA 174

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
            +++ M+ G+             R       + D  +   V+  C   KD V+G  +H  
Sbjct: 175 FAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQ 234

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
            LK  L+++ +V +ALVDMY KC  + DA + F+ +P +++V+WT ++ A          
Sbjct: 235 ALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYTQNELYEDA 294

Query: 234 --------------NKFLLDVILGT------------------------------AVIDM 249
                         N+F   V L +                              A+++M
Sbjct: 295 LQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLLVSNALMNM 354

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+K GSI+ A  +F  M  ++V+SW+ +I  Y +HG  ++ ++ F  MLS+ V+P+ +TF
Sbjct: 355 YSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAAVIPSYVTF 414

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           V +L AC+  GLV+E     ++M  +  + P  +HYTCMV LL R GRLDEA + I +  
Sbjct: 415 VGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEAERFIVNNC 474

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           +  D   W +LL +C+++KN  L    A+ +L+ +P + G YVLLSN+YA A RW  V K
Sbjct: 475 IGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLSNMYAKANRWDGVVK 534

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R  M  R ++K PG +WI V + +H F+  +  HPQ ++I + L  L ++++  GY+P+
Sbjct: 535 VRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLEELIDQIKAIGYVPN 594

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
               LHD+D+E K  +L  HSEKLA+AFGLI TP+G  I IMKNLR+C DCH  IK +S 
Sbjct: 595 FAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGATIHIMKNLRICDDCHVAIKLISV 654

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +T R I+VRDA RFH  EGG CSC DYW
Sbjct: 655 VTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 151/351 (43%), Gaps = 69/351 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +HA+++      ++++ N L+  YA    +  A  +F+ M  R++VS ++++ G++  
Sbjct: 31  KALHARLITAAHF-DVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASS 89

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  +  R  +  GM  + Y L   + A  + +   MGR  H   +K+G    ++V 
Sbjct: 90  GRHKESLQLLR-VVDFGM--NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVF 146

Query: 197 AALVDMYAKCKVIDDARQLFD-----------------------------------QMPT 221
            A++ MY +C  ++DA ++F+                                   +   
Sbjct: 147 NAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEK 206

Query: 222 RDLVTWTVMIGANKFLLDVIL-------------------GTAVIDMYAKCGSIDSAREI 262
            D V++  ++G    + D +L                   G+A++DMY KC  +  A   
Sbjct: 207 WDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRA 266

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ + +KNV+SW+A++ AY  +   + AL LF  M    V PN  T+   L +C+    +
Sbjct: 267 FEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAAL 326

Query: 323 EEGLRLFSSM-----WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
             G  L + +     WD   V         ++++  ++G +++A ++  SM
Sbjct: 327 RTGNALGACVMKTGHWDHLLVS------NALMNMYSKSGSIEDAHRVFISM 371



 Score = 46.2 bits (108), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 56/285 (19%), Positives = 115/285 (40%), Gaps = 58/285 (20%)

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
           CG  L  +    V+RA     D+  G+ +H  ++ +    D  +   L+  YAKC  +  
Sbjct: 5   CGAALQRHAAVAVLRAAAAAGDLSKGKALHARLITAA-HFDVVLHNNLISFYAKCGRVGL 63

Query: 212 ARQLFDQMPTRDLVTWTVMI---------------------GANKFLLDVILG------- 243
           AR +FD MP R+ V+  +++                     G N+++L   +        
Sbjct: 64  ARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQLLRVVDFGMNEYVLSAAVSATANVRS 123

Query: 244 -----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                   AV+ MY +C  ++ A ++F+ +   +  ++++MI  
Sbjct: 124 YDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMING 183

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           Y   GQ   +L +   M       + +++V++L  C+       G ++ +        R 
Sbjct: 184 YLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKK---RL 240

Query: 341 DVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           ++  Y  + +VD+ G+   + +A +  E +  EK+   W A++ A
Sbjct: 241 ELNVYVGSALVDMYGKCDHVHDANRAFEVLP-EKNVVSWTAVMTA 284


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 310/576 (53%), Gaps = 56/576 (9%)

Query: 58   VDPKFFISSLLSCRNI---FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            +D    +S L +C      F  R VH   V  G +    +AN LL +Y+        + +
Sbjct: 509  LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQI 568

Query: 115  FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            F  M +++ VSW+ M+  +++   F       +E +  G++ D + +  V+      + +
Sbjct: 569  FRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESL 628

Query: 175  VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-- 232
              G+ +H   +++G++    V  AL++MY  C+ +++AR +FD +  +D+++W  +IG  
Sbjct: 629  KQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGY 688

Query: 233  -----ANK----------------------------------------------FLLDVI 241
                 AN+                                              FL D  
Sbjct: 689  SRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSY 748

Query: 242  LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
               A++DMY KCG++  AR +FDR+ +KN+ISW+ MIA YG HG GK A+ LF  M  S 
Sbjct: 749  TSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSG 808

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            V P+  +F ++LYAC H+GL  EG + F++M  ++ + P +KHYTC+VDLL   G L EA
Sbjct: 809  VEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEA 868

Query: 362  LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             + IESM +E D  +W +LL  CRIH++V LAE  A  + + +P+N G+YVLL+N+YA A
Sbjct: 869  FEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEA 928

Query: 422  GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
             RW+ V K+++ +  R L++  G +WIEV  K+H F   +  HP+   I   L  ++ ++
Sbjct: 929  ERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRM 988

Query: 482  ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
               G+ P   + L   ++ V    L  HS KLA+ FG++  PEG  IR+ KN +VC  CH
Sbjct: 989  REEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCH 1048

Query: 542  SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
               K +S +  R II+RD++RFHHFEGG CSCR ++
Sbjct: 1049 EAAKFISKMCNREIILRDSSRFHHFEGGRCSCRGHF 1084



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 164/412 (39%), Gaps = 92/412 (22%)

Query: 64  ISSLLSCRNIFQIRQ----VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +S LL C       +     H  +V  G  T   V N L+  YA    + +A  +F+ M 
Sbjct: 413 LSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMP 472

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +D++SW+ ++ G +         E F      G +LDS TL  V+ AC       +GR+
Sbjct: 473 HQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRV 532

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H   +K+GL  +  +  AL+DMY+ C       Q+F  M  +++V+WT MI +      
Sbjct: 533 VHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGL 592

Query: 234 --------NKFLLDVI----------------------------------------LGTA 245
                    + +LD I                                        +  A
Sbjct: 593 FDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANA 652

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +++MY  C +++ AR +FD +  K++ISW+ +I  Y  +    ++  LF  ML  +  PN
Sbjct: 653 LMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDML-LQFKPN 711

Query: 306 RITFVSLLYACSHTGLVEEG-------LR-----------------------LFSSMWDD 335
            +T   +L A +    +E G       LR                       L + +  D
Sbjct: 712 TVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFD 771

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
              + ++  +T M+   G  G   +A+ L E M    VE D   + A+L AC
Sbjct: 772 RLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYAC 823



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 173/406 (42%), Gaps = 98/406 (24%)

Query: 64  ISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +S +L C     +I +   +H  +   G      VAN L+ +Y+    + DA  +F+ M 
Sbjct: 201 VSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMH 260

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD++SW+  + G+          + F +    G ++ S T+  V+ AC +    ++G++
Sbjct: 261 ARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKV 320

Query: 180 IHDIVLKSGL---------DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTV 229
           +H   +KSGL          ID+ + + LV MY KC  +  AR++FD MP++  V  W +
Sbjct: 321 VHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNL 380

Query: 230 MIG------------------------------------------------ANKFLLDVI 241
           ++G                                                A+ +L+ + 
Sbjct: 381 IMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLG 440

Query: 242 LGT------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
            GT      A+I  YAK   ID+A  +FDRM  ++ ISW+++I+    +G   +A++LF 
Sbjct: 441 FGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFV 500

Query: 296 MMLSSRVLPNRITFVSLLYAC--SH--------------TGLVEEG------LRLFSSMW 333
            M       +  T +S+L AC  SH              TGL+ E       L ++S+  
Sbjct: 501 RMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCS 560

Query: 334 DDFAV--------RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           D  +         + +V  +T M+    RAG  D+   L++ M ++
Sbjct: 561 DWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLD 606



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 138/324 (42%), Gaps = 58/324 (17%)

Query: 71  RNIFQIRQVHAQIVAG-GTLTNLIVANKLLYIYALHKALTDAHALFNGMKER--DSVSWS 127
           R++   R+ HA + AG G +   ++  +L+  Y     L  A  +F+ M  R  D   W+
Sbjct: 108 RSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWT 167

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            ++  ++K  DF      FR+   CG+  D++ +  V++       I  G +IH ++ K 
Sbjct: 168 SLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKL 227

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247
           GL     V  AL+ +Y++C  ++DA Q+FD M  RD ++W                    
Sbjct: 228 GLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISW-------------------- 267

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
                                      ++ I+ Y  +G   +A+DLF  M S     + +
Sbjct: 268 ---------------------------NSTISGYFSNGWHDRAVDLFSKMWSEGTEISSV 300

Query: 308 TFVSLLYACSHTGL-----VEEGLRLFSS-MWDDFAVRPDVKHY--TCMVDLLGRAGRLD 359
           T +S+L AC+  G      V  G  + S  +WD  +V+  +     + +V +  + G + 
Sbjct: 301 TVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMG 360

Query: 360 EALKLIESMSVEKDEGLWGALLGA 383
            A ++ ++M  + +  +W  ++G 
Sbjct: 361 SARRVFDAMPSKGNVHVWNLIMGG 384


>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
 gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
 gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 591

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/578 (35%), Positives = 314/578 (54%), Gaps = 63/578 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S ++S      +RQ+HA ++    + N  V +  L   AL     D +       +R 
Sbjct: 14  LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73

Query: 123 SVSWS---VMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGR 178
           + + S    M+  FS        F  FR   R   +  +  +  F ++ C    D++ G 
Sbjct: 74  NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NK 235
            IH  +   G   D  +   L+D+Y+ C+   DA ++FD++P RD V+W V+      NK
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193

Query: 236 FLLDVIL-----------------------------------GTAVID------------ 248
              DV++                                   G  V D            
Sbjct: 194 RTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALN 253

Query: 249 -------MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                  MY++CGS+D A ++F  MR++NV+SW+A+I+    +G GK+A++ F  ML   
Sbjct: 254 LSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFG 313

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDE 360
           + P   T   LL ACSH+GLV EG+  F  M   +F ++P++ HY C+VDLLGRA  LD+
Sbjct: 314 ISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDK 373

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  LI+SM ++ D  +W  LLGACR+H +V+L E     L+E + +  G YVLL N Y+ 
Sbjct: 374 AYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYST 433

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
            G+W+ V ++R LM  +R+   PG + IE++  +H+F V D +HP+ EEIY+ML  ++++
Sbjct: 434 VGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQ 493

Query: 481 LELAGYIPDTNFELHDVDEEVKVG-NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           L++AGY+ +   ELH+++ E + G  L  HSEKLAIAFG++ TP GT IR+ KNLR C D
Sbjct: 494 LKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVD 553

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CH+F K VS +  R++IVRD +RFHHF+GG+CSC D+W
Sbjct: 554 CHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/487 (39%), Positives = 274/487 (56%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +L+    +L  YA H  L  A  LF+GM+ERD V W+VM+ G+++          FR  +
Sbjct: 136 SLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRML 195

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           +   + +  T+  V+ AC     +  GR +H  +  +G+  +  V  ALVDMY+KC  ++
Sbjct: 196 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 255

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           DAR +FD++  +D+V W  M                                        
Sbjct: 256 DARLVFDKIDDKDVVAWNSM---------------------------------------- 275

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
                  I  Y   G  ++AL LF  M    + P  ITF+ +L AC H+G V EG  +F+
Sbjct: 276 -------IVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 328

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M D++ + P ++HY CMV+LLGRAG +++A +L+++M++E D  LWG LLGACR+H  +
Sbjct: 329 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 388

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
            L E   + L+++   N G Y+LLSN+YA  G W  VA++R +M    +KK PG + IEV
Sbjct: 389 ALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 448

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
            NK+H+F  G   HP+ +EIY ML  ++  L+  GY P T+  LHD+ E  K  +L  HS
Sbjct: 449 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHS 508

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGLI T  GT I+I+KNLRVC DCH   K +S IT R I+VRD NRFHHF  G+
Sbjct: 509 EKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGS 568

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 569 CSCGDYW 575


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 314/579 (54%), Gaps = 66/579 (11%)

Query: 63  FISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LH-----KALTDAH 112
           F + L +C +   +F+  Q H  +   G + +  V + L+++Y+   H     + L   H
Sbjct: 124 FTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEH 183

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
              N   + D+  ++ ++    +        E     +  G+  DS T   V+  C   +
Sbjct: 184 G--NIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIR 241

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
           D+ +G  +H  +LK GL  D FV + LVDM+ KC  +  AR++FD +  R++V WT ++ 
Sbjct: 242 DLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMT 301

Query: 233 A------------------------NKF----LLD------------------------- 239
           A                        N+F    LL+                         
Sbjct: 302 AYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKN 361

Query: 240 -VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
            VI+G A+I+MY+KCG IDS+ ++F  MR +++I+W+AMI  Y  HG GK+AL LF  ML
Sbjct: 362 RVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDML 421

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           S+   PN +TFV +L AC+H  LV EG    + +   F V P ++HYTC+V +L RAG L
Sbjct: 422 SAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGML 481

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA   + +  V+ D   W  LL AC IH+N +L    A+++L+  P++ G Y LLSN+Y
Sbjct: 482 EEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMY 541

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A A  W  V  IR +M  R +KK PG +WIE+ N +H FS   S HP+  +IY  +  L 
Sbjct: 542 AKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLL 601

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E ++  GY+P+    LHDV++E K   L  HSEKLAIA+GL+  P    IR++KNLR+C 
Sbjct: 602 EMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICE 661

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+ +K +S +T R+IIVRDA+RFHHF  G C+C D+W
Sbjct: 662 DCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 146/350 (41%), Gaps = 61/350 (17%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I  N L+ +Y     L  A  LF+ M  R  VS++V++GG+    + +   + F+  +
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV 113

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
               Q + Y    V+ AC     +  G   H  + K GL    FV ++LV MY+KC  +D
Sbjct: 114 SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVD 173

Query: 211 DARQLF----------------------------------------DQMPTRDLVTWTVM 230
            A Q+                                         D+    D VT+  +
Sbjct: 174 LALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSV 233

Query: 231 IG-------------------ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           +G                         DV +G+ ++DM+ KCG + SAR++FD ++ +NV
Sbjct: 234 MGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNV 293

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
           + W++++ AY  +G+ ++ L+L   M     + N  TF  LL A +    +  G  L  +
Sbjct: 294 VVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHG-DLLHA 352

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             +   ++  V     ++++  + G +D +  +   M   +D   W A++
Sbjct: 353 RVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMR-NRDIITWNAMI 401



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 74/132 (56%), Gaps = 5/132 (3%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            ++I   ++I++Y KC  +  AR +FD M  ++V+S++ ++  Y + G+  + + LF  M
Sbjct: 53  FNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNM 112

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRA 355
           +SS   PN   F ++L AC+H+G V EG++    +   F       H+  + +V +  + 
Sbjct: 113 VSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFL---FKFGLVFHHFVKSSLVHMYSKC 169

Query: 356 GRLDEALKLIES 367
             +D AL+++ES
Sbjct: 170 FHVDLALQVLES 181


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/467 (41%), Positives = 275/467 (58%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF  M E++ VSW+ MV GFS+  D     ETF   +  G + + YT+   + AC  
Sbjct: 260 AKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAK 319

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G  IH+                                                
Sbjct: 320 IGALDAGLRIHN-----------------------------------------------Y 332

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
           +  N F L++++GTA++DMYAKCG+I+ A ++F   ++K ++ WS MI  +  HG  +KA
Sbjct: 333 LSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKA 392

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L  F  M  +   P+ + F+++L ACSH+G V EGL+ F +M   + + P +KHYT +VD
Sbjct: 393 LQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVD 452

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           +LGRAGRLDEALK I +M +  D  +WGAL  ACR HKNV++AE+A+K LL+ +P++PG 
Sbjct: 453 MLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGS 512

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YV LSN YA+ GRW D  ++R  M      K PGW++IEV++K+H+F  GD+TH ++ EI
Sbjct: 513 YVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEI 572

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y  L  +S      GY  +    LH+++EE K   L  HSEKLA+AFG+++T  GT +RI
Sbjct: 573 YSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRI 632

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCHSF+K+ S +++R II+RD  RFHHF  G CSC DYW
Sbjct: 633 VKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 193/398 (48%), Gaps = 24/398 (6%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FI  + +  +  ++RQ+H Q+      ++  V  + +   +   ++  A ++F   + ++
Sbjct: 45  FIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKN 104

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           S  ++ ++ G ++ + F +    F   ++  +  D  T PFV+++     +  +GR +H 
Sbjct: 105 SYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHC 164

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGANKFLL 238
            +LK GL+ D FV  +LVDMY K + +  A ++FD+ P       ++ W V+I     + 
Sbjct: 165 GILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMG 224

Query: 239 DVILGT---------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           D++  T               ++I+ + K G +  A+E+F +M +KNV+SW+ M+  +  
Sbjct: 225 DLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQ 284

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           +G  +KAL+ F  ML     PN  T VS L AC+  G ++ GLR+ + +  +   + ++ 
Sbjct: 285 NGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGN-GFKLNLV 343

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
             T +VD+  + G ++ A K+    + EK   +W  ++    IH +   A +     ++ 
Sbjct: 344 IGTALVDMYAKCGNIEHAEKVFHE-TKEKGLLIWSVMIWGWAIHGHFRKA-LQYFEWMKF 401

Query: 404 QPQNPGHYVLLS--NVYANAGRWQDVAKIRDLMTRRRL 439
               P   V L+  N  +++G+  +  K  D M R  L
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYL 439



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 9/190 (4%)

Query: 52  CQFTRSVDPKFF--ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHK 106
           C       P  +  +S+L +C  I  +    ++H  +   G   NL++   L+ +YA   
Sbjct: 297 CMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCG 356

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
            +  A  +F+  KE+  + WSVM+ G++    F    + F      G + DS     V+ 
Sbjct: 357 NIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLN 416

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMP-TRD 223
           AC     +  G    D  ++ G  I+  +     +VDM  +   +D+A +    MP T D
Sbjct: 417 ACSHSGQVNEGLKFFD-NMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPD 475

Query: 224 LVTWTVMIGA 233
            V W  +  A
Sbjct: 476 FVVWGALFCA 485


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/535 (38%), Positives = 297/535 (55%), Gaps = 66/535 (12%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +YA    L  A  +F+ M  R+ VSW+ ++ G+++      CF  F +     M +D Y 
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSD-----MLVDCYP 55

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-CK-----VIDDARQ 214
             F   +     D V G+ +H + LK GL    +V  AL+  Y+K C+        +A +
Sbjct: 56  NEFAFASVIISCDYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACR 115

Query: 215 LFDQMPTRDLVTWTVMIGANK--------------------------------------- 235
           +F+ M  R+LV+W  MI A +                                       
Sbjct: 116 VFESMEFRNLVSWNSMIAAEEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHALA 175

Query: 236 ---------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                    F  D +L   +I  YA+CGSI  ++++FD+MR ++V+SW++MI AY  HGQ
Sbjct: 176 VYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQ 235

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            K+AL LF  M    V P+  T V+LL ACSH GLVEEG+ +F SM  +  V P + HY 
Sbjct: 236 AKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYA 292

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           CMVD+LGRAG L EA +LI  M ++ D  +W ALL +CR +    LA++AA  L E +P 
Sbjct: 293 CMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKELEPG 352

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           N   YV +SN+Y + G + +   IRD M   R++K PG +WIE+EN++H+F+ G   HPQ
Sbjct: 353 NSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFASGGRRHPQ 412

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPE-- 524
            E IY  L +L  +L+  GY+P+T+  L D++EE K   LY HSEKLA+ F L++     
Sbjct: 413 REAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFALMSEGSLC 472

Query: 525 --GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             G  IRI+KN+R+C DCH+F+K  S + ++ I+VRD+NRFHHF+   CSC DYW
Sbjct: 473 CGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCNDYW 527


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 308/592 (52%), Gaps = 90/592 (15%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDSVSWSVMVGG 132
           +++Q+H Q+V  G L N  +  + +   A+     L  ++ + +   +    + + M+  
Sbjct: 24  ELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRA 83

Query: 133 FSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           +SK       F+ + + ++    M  D+YT  F++R C  +     G  +H  ++K G +
Sbjct: 84  YSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCA-QSACEAGPAVHGALIKHGFE 142

Query: 191 IDQFVCAALVDMYA-------------------------------KCKVIDDARQLFDQM 219
            D  V + L+ MYA                               KC  I  AR LFD M
Sbjct: 143 YDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSM 202

Query: 220 PTRD-----------------------------------------LVTWTVMIGA----- 233
           P RD                                         +VT    +GA     
Sbjct: 203 PQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGK 262

Query: 234 --------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                   NK  + V LGTA++DMY KCG++D A ++F  M +KNV +WS  I     +G
Sbjct: 263 WAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNG 322

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
            G+K L+LF  M    + PN ITF+S+L  CS  G V+EG   F SM  D  + P ++HY
Sbjct: 323 YGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHY 382

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            CMVDL GRAGRL+EAL  I +M ++   G WGALL ACR++KN++L E A++ L+E + 
Sbjct: 383 GCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEG 442

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
           +N G YV LSN+YA+ G W  V+ +R  M    + K+PG + +EV  ++H+F  GD +HP
Sbjct: 443 KNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHP 502

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
             + I  M   +S++L+LAGY+  TN  L D++EE K   L  HSEK+AIAFGL +  EG
Sbjct: 503 SYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEG 562

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             IRI+KNLR+C DCH   K +S I  R IIVRD NRFHHF+ G CSC+D+W
Sbjct: 563 LPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614



 Score = 42.0 bits (97), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 80/187 (42%), Gaps = 9/187 (4%)

Query: 64  ISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           IS + +C ++  + Q    HA I        + +   L+ +Y     +  A  +F  M E
Sbjct: 246 ISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNE 305

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           ++  +WS  +GG +       C E F      G+  +  T   V++ C     +  GR  
Sbjct: 306 KNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSH 365

Query: 181 HDIVLKS-GLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTVMIGANKF 236
            D + +  G++  ++ + C  +VD+Y +   +++A    + MP +     W  ++ A + 
Sbjct: 366 FDSMKRDHGIEPRLEHYGC--MVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRM 423

Query: 237 LLDVILG 243
             ++ LG
Sbjct: 424 YKNMELG 430


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 316/603 (52%), Gaps = 89/603 (14%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKER 121
           IS +  C  + +++Q+H Q++  G L +  +  + +   AL+    L  ++ + +  +  
Sbjct: 13  ISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNP 72

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRL 179
              +++ M+   SK +     F  +   +     L  D+YT  F++R          G  
Sbjct: 73  TLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSS 132

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAK----------------------------CKVIDD 211
           +H   +K G + D  V + L+ MYA+                            C  + D
Sbjct: 133 VHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGD 192

Query: 212 ---ARQLFDQMPTRDLVTWTVM-------------------------------------- 230
              AR+LFD+M  +D + W  M                                      
Sbjct: 193 VGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSA 252

Query: 231 ---IGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
              +GA             NK  + + LGTA+IDMYAKCG+++ A E+F  M++KNV +W
Sbjct: 253 CSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTW 312

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           S+ I     +G G+K L+LF +M    V PN ITFVS+L  CS  GLVEEG + F SM  
Sbjct: 313 SSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSK 372

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
            + + P ++HY CMVDL GRAG LDEAL  I SM V    G WGALL AC+I++N+++ E
Sbjct: 373 VYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGE 432

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
           +A++ ++E + +N G YVLLSN+YA++  W  V+ +R  M  + ++K PG + IEV  ++
Sbjct: 433 LASRKIVELEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEV 492

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H+F VGD +HP+  EI  ML  +S +L+L+GY+ +TN    D++EE K   L  HSEK+A
Sbjct: 493 HEFFVGDKSHPRYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIA 552

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI+      IRI+KNLRVC DCH   K +S    R I+VRD NRFHHF  G CSC+
Sbjct: 553 IAFGLISLSPDVPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCK 612

Query: 575 DYW 577
            YW
Sbjct: 613 GYW 615


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/572 (37%), Positives = 306/572 (53%), Gaps = 85/572 (14%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N ++ N L+ +Y    A+  A  +F+   +++ V ++ ++  + +            E +
Sbjct: 274 NALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEML 333

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---- 206
           + G + D  T+   + AC +  D+  G+  H  VL++GL+    VC A+++MY KC    
Sbjct: 334 KHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQE 393

Query: 207 ---KVID------------------------DARQLFDQMPTRDLVTWTVM--------- 230
              +V D                         A ++F  MP  DLV+W  M         
Sbjct: 394 MACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESM 453

Query: 231 ---------------IGANKFLL------------------------------DVILGTA 245
                          I A+K  +                              D+ LGTA
Sbjct: 454 FKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTA 513

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++DM+A+CG   SA ++F++M +++V +W+A I A    G G  A++LF  ML   + P+
Sbjct: 514 LVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPD 573

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            + FV+LL A SH GLVE+G  +F SM D + + P   HY CMVDLLGRAG L EAL LI
Sbjct: 574 GVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLI 633

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
            SM +E ++ +WG+LL ACR+HKNVD+A  AA+ + E  P+  G +VLLSN+YA+AGRW 
Sbjct: 634 NSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWD 693

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
           DVAK+R  +  +   K+PG + IE+  KI +F+ GD +HP+   I  ML  +  +L   G
Sbjct: 694 DVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIG 753

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PD    L DV+E+ K   L  HSEKLAIAF LI+T +G  IR+ KNLR+C DCHSF K
Sbjct: 754 YVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAK 813

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            VS    R IIVRD NRFH F+ G CSC DYW
Sbjct: 814 LVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 178/418 (42%), Gaps = 97/418 (23%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F +S+      + +  QVH  IV  G   ++ V N L++ Y     +     +F+ M ER
Sbjct: 144 FVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSER 203

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           + VSW+ ++GG++K   +      F E +  G++ +S T+  VI AC   +D+ +G  + 
Sbjct: 204 NVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVC 263

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVM---------- 230
             + +  L+++  +  ALVDMY KC  ID AR++FD+   ++LV + T+M          
Sbjct: 264 TCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAR 323

Query: 231 ------------------------IGANKFLLDVILG-------------------TAVI 247
                                   + A   L DV  G                    A+I
Sbjct: 324 EVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAII 383

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG-------------------- 287
           +MY KCG  + A  +FDRM  K  +SW+++IA +  +G                      
Sbjct: 384 NMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNT 443

Query: 288 -----------KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
                      K+A++LF +M S  +  +++T V +  AC + G ++       + W   
Sbjct: 444 MIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALD------LAKWIHG 497

Query: 337 AVRPDVKHY-----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
            ++    H+     T +VD+  R G    A+++   M V++D   W A +GA  +  N
Sbjct: 498 YIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGN 554



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 80/388 (20%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGG------TLTNLIVANKLLYIYALHKALTDAHALF---N 116
           S   C+ + +++Q+H+QI   G      +LTNLI +   +  +   +    A  LF   N
Sbjct: 39  SFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDN 98

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           G+     + +S ++ GFS           FR+ +  G   D++T PFV+ AC     +  
Sbjct: 99  GIMGTHYM-FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTE 157

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG---- 232
           G  +H  ++K G + D FV  +L+  Y +C  ID  R++FD+M  R++V+WT +IG    
Sbjct: 158 GFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAK 217

Query: 233 -------------------------------ANKFLLDVILG------------------ 243
                                          A   L D+ LG                  
Sbjct: 218 RGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALM 277

Query: 244 -TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             A++DMY KCG+ID AR+IFD    KN++ ++ +++ Y   G  ++ L +   ML    
Sbjct: 278 VNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGP 337

Query: 303 LPNRITFVSLLYACSHTGLVEEG-------LRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            P+RIT +S + ACS    V  G       LR     WD+            ++++  + 
Sbjct: 338 RPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVC--------NAIINMYMKC 389

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGA 383
           G+ + A ++ + M + K    W +L+  
Sbjct: 390 GKQEMACRVFDRM-LNKTRVSWNSLIAG 416


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/467 (42%), Positives = 273/467 (58%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF  M E++ V+W+ M+ G+ +     +  + FR  +  G+Q +S TL   +  C +
Sbjct: 150 AERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSE 209

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              + +GR +H +V KS L                C                        
Sbjct: 210 LSALQLGRQVHQLVCKSPL----------------CD----------------------- 230

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                   D   GT++I MY KCG ++   ++F ++ +++V++W+AMI+ Y  HG+GKKA
Sbjct: 231 --------DTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKA 282

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M+   + P+ ITFV++L AC+H G  + G++ F SM  D+ +     HYTCMVD
Sbjct: 283 LGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVD 342

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRAG+L EA+ LIE M  +    ++G LLGACRIHKN ++AE A++ LL   P +   
Sbjct: 343 LLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATG 402

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YV L+NVYA   RW  VA++R  M   ++ K PG++WIEV++  HQF  GD  HP+   I
Sbjct: 403 YVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASI 462

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           +  L  L +K++LAGY+PD  F LHDV EE K   L  HSEKLAIA+GLI  P GT IR+
Sbjct: 463 HGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRV 522

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLRVCGDCH  IK++S I RR IIVRD  RFHHF+ G CSC DYW
Sbjct: 523 FKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 140/368 (38%), Gaps = 100/368 (27%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y  +  +  A A F  M  +D+ SW+ M+ GF++                   Q
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQ-----------------NQQ 84

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           +D     F+I      K++V                      A++  Y +C  +D A +L
Sbjct: 85  MDKARDLFLIMPT---KNVVTWN-------------------AMISGYVECGDLDSALKL 122

Query: 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
           F++ P + +V WT MI                  Y K G I  A  +F++M +KN+++W+
Sbjct: 123 FEKAPFKSVVAWTAMITG----------------YMKLGRIGLAERLFEKMPEKNLVTWN 166

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH----------------- 318
           AMIA Y  + + +  + LF  M+   + PN  T  S L  CS                  
Sbjct: 167 AMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKS 226

Query: 319 ------------------TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
                              G++E+G +LF  +      R DV  +  M+    + G   +
Sbjct: 227 PLCDDTTAGTSLISMYCKCGVLEDGWKLFVQV-----PRRDVVTWNAMISGYAQHGEGKK 281

Query: 361 ALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP--QNPGHYVLLS 415
           AL L + M    ++ D   + A+L AC      DL      S+ +       P HY  + 
Sbjct: 282 ALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMV 341

Query: 416 NVYANAGR 423
           ++   AG+
Sbjct: 342 DLLGRAGK 349



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 65  SSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           S+LL C  +  +   RQVH  +       +      L+ +Y     L D   LF  +  R
Sbjct: 202 SALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRR 261

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLI 180
           D V+W+ M+ G+++  +       F E I  GM+ D  T   V+ AC       +G +  
Sbjct: 262 DVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYF 321

Query: 181 HDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
           H +    GL    D + C  +VD+  +   + +A  L ++MP +
Sbjct: 322 HSMAKDYGLVAKPDHYTC--MVDLLGRAGKLVEAVDLIEKMPFK 363



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 26/187 (13%)

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
           + L  M  K   + +A++LF ++P  D V++  M+                  Y +  ++
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSC----------------YVRNSNM 54

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A+  F+ M  K+  SW+ MI  +  + Q  KA DLF +M +  V    +T+ +++   
Sbjct: 55  ERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGY 110

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
              G ++  L+LF       A    V  +T M+    + GR+  A +L E M  EK+   
Sbjct: 111 VECGDLDSALKLFEK-----APFKSVVAWTAMITGYMKLGRIGLAERLFEKMP-EKNLVT 164

Query: 377 WGALLGA 383
           W A++  
Sbjct: 165 WNAMIAG 171


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 318/597 (53%), Gaps = 84/597 (14%)

Query: 65   SSLLSCRNIFQIR---QVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKE 120
            S L +C  + ++R   ++H   +  G L  N  V   L+ +Y   K       +F+G+  
Sbjct: 539  SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVR 598

Query: 121  RDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            R    W+ ++ G+++          F E I       ++ T   V+ AC   K       
Sbjct: 599  RTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEG 658

Query: 180  IHDIVLKSGLDIDQFVCAALVDMYAK-------------------------------CKV 208
            IH  ++K G   D++V  AL+DMY++                               C  
Sbjct: 659  IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718

Query: 209  IDDARQLFDQMPTRD-----------------------LVTWTVMIGA------------ 233
             DDA  L  +M  R                        +   TV+ G             
Sbjct: 719  YDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEI 778

Query: 234  ------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                   K  +DV +G+A++DMYAKCG ++ A  +FD+M  +NVI+W+ +I AYG HG+G
Sbjct: 779  HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKG 838

Query: 288  KKALDLFPMML----SSR--VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
            ++AL+LF +M     S+R  + PN +T++++  ACSH+G+V+EGL LF +M     V P 
Sbjct: 839  EEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPR 898

Query: 342  VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSL 400
              HY C+VDLLGR+GR+ EA +LI +M    ++   W +LLGACRIH++V+  E+AAK L
Sbjct: 899  GDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHL 958

Query: 401  LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
               +P    HYVL+SN+Y++AG W     +R  M    ++K PG +WIE  +++H+F  G
Sbjct: 959  FVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSG 1018

Query: 461  DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
            D++HPQS+E++  L TLS+++   GY+PD +  LH+VD+E K   L  HSE+LAIAFGL+
Sbjct: 1019 DASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLL 1078

Query: 521  ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             TP GT IR+ KNLRVC DCH   K +S I  R II+RD  RFHHF  G CSC DYW
Sbjct: 1079 NTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 170/392 (43%), Gaps = 66/392 (16%)

Query: 77  RQVHAQIVAGG--TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           +Q+HA +   G    +++ VAN L+ +Y     LT A  +F+ + +RD VSW+ M+    
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHDIVLKSGLDIDQ 193
           +  ++      FR  +   +   S+TL  V  AC   R  + +G+ +H   L++G D+  
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRT 468

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----NKF---LLDVIL---- 242
           +   ALV MYA+   ++DA+ LF     +DLV+W  +I +    ++F   L+ V L    
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 243 -----GTAVIDMYAKCGSID---------------------------------------S 258
                G  +  +   C  ++                                        
Sbjct: 529 GVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK 588

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACS 317
            R +FD + ++ V  W+A++A Y  +    +AL LF  M+S S   PN  TF S+L AC 
Sbjct: 589 GRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACV 648

Query: 318 HTGLV--EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
              +   +EG+  +  +   F     V++   ++D+  R GR++ +  +   M+ ++D  
Sbjct: 649 RCKVFSDKEGIHGY-IVKRGFGKDKYVQN--ALMDMYSRMGRVEISKTIFGRMN-KRDIV 704

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
            W  ++  C +    D A      +  RQ ++
Sbjct: 705 SWNTMITGCIVCGRYDDALNLLHEMQRRQGED 736



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 105/257 (40%), Gaps = 56/257 (21%)

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           ++ R    W  ++   +  + F +   T+   +      D++  P V++A     D+ +G
Sbjct: 290 VERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLG 349

Query: 178 RLIHDIVLKSGLDIDQFVCAA--LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           + IH  V K G      V  A  LV+MY KC  +  ARQ+FD +P RD V+W  MI    
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 234 ----------------------NKFLL------------DVILGTAV------------- 246
                                   F L             V LG  V             
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTY 469

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                + MYA+ G ++ A+ +F     K+++SW+ +I++   + + ++AL    +M+   
Sbjct: 470 TNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDG 529

Query: 302 VLPNRITFVSLLYACSH 318
           V P+ +T  S+L ACS 
Sbjct: 530 VRPDGVTLASVLPACSQ 546


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/520 (38%), Positives = 299/520 (57%), Gaps = 20/520 (3%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F S L++CR I    Q+HA +   G   + +  N L+++Y   +AL +A  +F+ +   D
Sbjct: 128 FPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPD 187

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           SVSW+ ++ G+SK       F  F+   +      +  +   ++  R  +      L   
Sbjct: 188 SVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFA---LFDR 244

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
           +  ++   +D+FV   ++        +D  + + +             I  N   LD  L
Sbjct: 245 MKAENNNVLDKFVATTMLSACTGLGALDQGKWIHE------------YIKRNGIELDSKL 292

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            TA++DMY KCG ++ A ++F  +    + + SW+ MI     HG G+ A+ LF  M   
Sbjct: 293 TTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQ 352

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
           RV P+ ITF++LL AC+H+GLVEEG   FS M   + + P ++H+ CMVDLLGRAG + E
Sbjct: 353 RVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPE 412

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A KLI+ M V  D  + G LLGAC+ H+N++L E   + ++E +P N G YVLL+N+YAN
Sbjct: 413 ARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYAN 472

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           AG+W+D AK+R LM  R +KK PG++ IE++  +H+F  G+  HPQ++E++  +  + E 
Sbjct: 473 AGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEH 532

Query: 481 LELAGYIPDTNFEL--HDVDEEVKVGN-LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
           L+  GY+ DTN  L  HD DEE    N LY HSEKLAIAFGL  T  G  +RI+KNLR+C
Sbjct: 533 LKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRIC 592

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCH   K +S +  R IIVRD  RFH F+ G CSC+DYW
Sbjct: 593 EDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 172/359 (47%), Gaps = 28/359 (7%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA---LHKALTDAHALFNGMKERDSVSW 126
           C+++ Q+RQ H+QI+  G  ++  +   L+   A      ALT A  LF+ + + D+  +
Sbjct: 32  CQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLY 91

Query: 127 SVMVGGF--SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           + ++ GF  S++    +    +   ++  +  +++T P ++ ACR    I  G  IH  +
Sbjct: 92  NTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACR---KIQHGMQIHAHL 148

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
            K G         +L+ MY   + +++AR++F  +P  D V+WT +I             
Sbjct: 149 FKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISG----------- 197

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP-MMLSSRVL 303
                Y+K G ID A  IF  M QKN  SW+AM+AAY    +  +A  LF  M   +  +
Sbjct: 198 -----YSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNV 252

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            ++    ++L AC+  G +++G  +   +  +  +  D K  T +VD+  + G L++AL+
Sbjct: 253 LDKFVATTMLSACTGLGALDQGKWIHEYIKRN-GIELDSKLTTAIVDMYCKCGCLEKALQ 311

Query: 364 LIESMSVE-KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           +  S+ +  +    W  ++G   +H N + A    K  +ERQ   P     L+ + A A
Sbjct: 312 VFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKE-MERQRVAPDDITFLNLLTACA 369


>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
          Length = 593

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/565 (38%), Positives = 325/565 (57%), Gaps = 58/565 (10%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTL---TNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L SC  I Q++Q+HAQ +   +        + +++L+  +LH  L  A  +F+ ++  +S
Sbjct: 33  LNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHD-LRYAFRVFHQIENPNS 91

Query: 124 VSWSVMVGGFSKVADFI-NCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLI 180
             W+ ++   ++  D   +    +   +  G  MQ D +T PFV++AC     +  G  I
Sbjct: 92  FMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQ-DKHTFPFVLKACAYLFALSEGEQI 150

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------- 233
           H  +LK G D D ++  +LV  YA C  +D A+ +FD+M  R LV+W V+I A       
Sbjct: 151 HAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEF 210

Query: 234 ----------NKFLL-------------------------DVILGTAVIDMYAKCGSIDS 258
                      KF                           DV+L T+++DMY KCGS++ 
Sbjct: 211 DAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDMYCKCGSLEL 270

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACS 317
           A ++F RM +++V SW++MI  +  HG+   AL+ F  M+ + +++PN ITFV +L AC+
Sbjct: 271 ALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACN 330

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GLV EG R F  M  ++ ++P+++HY C+VDLL RAG +DEAL ++ +M +  D  +W
Sbjct: 331 HGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIW 390

Query: 378 GALLGAC-RIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
            +LL AC + +  V+L+E  A+ +LE +     G YVLLS VYA+A RW DV  +R LMT
Sbjct: 391 RSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMT 450

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
            + + K PG + IE++   H+F  GD++HPQ+EEIY  L  + E++E  GY PD++ +  
Sbjct: 451 DKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSS-QAP 509

Query: 496 DVDEEVKVGNLYS---HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
            VDE +  G  YS   HSE+LAIAFGL+ T  G  IRI KNLRVC +CH   K +S +  
Sbjct: 510 MVDETID-GKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFN 568

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R IIVRD  RFHHF+ GACSC DYW
Sbjct: 569 REIIVRDRIRFHHFKDGACSCMDYW 593


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/585 (36%), Positives = 309/585 (52%), Gaps = 85/585 (14%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           ++H      G + +  +   L+ +YA  + + DA  LF+ M   D+V+W++++ G+ +  
Sbjct: 142 EIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNG 201

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            + +    F +     M+ DS  L  V+ AC    ++  GR IH+ V  +G  ID  +  
Sbjct: 202 HYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQT 261

Query: 198 ALVDMYAKC-------KVID------------------------DARQLFDQMPTR---- 222
           AL++MYA C       K+ D                        DAR +FDQM  R    
Sbjct: 262 ALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVC 321

Query: 223 -------------------------------DLVTWTVMIGA------------------ 233
                                          D +T   +I A                  
Sbjct: 322 WSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVD 381

Query: 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
            + F   + +  A+IDMYAKCG++  ARE+F+ M +KNVISWS+MI A+  HG    A+ 
Sbjct: 382 RSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIK 441

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           LF  M    + PN +TF+ +LYAC H GLVEEG +LFSSM ++  + P  +HY CMVDL 
Sbjct: 442 LFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLY 501

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
            RA  L +A++LIE+M    +  +WG+L+ AC++H   +L E AAK LLE +P + G  V
Sbjct: 502 CRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALV 561

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           +LSN+YA   RW DV  IR  M+ + + K    + IE+ N++H F + D  H QS+EIY 
Sbjct: 562 VLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYE 621

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  +  KL+L GY P T+  L D++EE K   +  HSEKLA+ +GLI+    + IRI+K
Sbjct: 622 KLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVK 681

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLR+C DCHSF+K VS + +  I+VRD  RFHH  GG CSCRDYW
Sbjct: 682 NLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 126/327 (38%), Gaps = 95/327 (29%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LD ++ P +++A         G  IH +  K G   D F+   L+ MYA C+ I DAR L
Sbjct: 119 LDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLL 178

Query: 216 FDQMPTRDLVTWTVMI----------GANKFLLD----------VILGTAVIDMYAKCG- 254
           FD+M   D V W ++I           A +   D          VIL T +    + CG 
Sbjct: 179 FDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVL----SACGH 234

Query: 255 -------------------SIDS------------------AREIFDRMRQKNVISWSAM 277
                              +IDS                  AR+I+D +  K++I  +AM
Sbjct: 235 AGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAM 294

Query: 278 IAAYGYHGQGKKALDLFPMM-------------------------------LSSRVLPNR 306
           ++ Y   G  K A  +F  M                               L  R +P++
Sbjct: 295 LSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQ 354

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           IT +S++ ACSH G + +      +  D       +     ++D+  + G L +A ++ E
Sbjct: 355 ITMLSVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFE 413

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLA 393
           +M   K+   W +++ A  +H N D A
Sbjct: 414 NMP-RKNVISWSSMINAFAMHGNADSA 439



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 94/208 (45%), Gaps = 6/208 (2%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLS-CRNIFQIRQ---VHAQIVAGGTLTNLIVANK 97
           P+  +++  +    RSV  +  + S++S C ++  + Q   +H  +   G    L V N 
Sbjct: 335 PQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNA 394

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157
           L+ +YA    L  A  +F  M  ++ +SWS M+  F+   +  +  + FR      ++ +
Sbjct: 395 LIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPN 454

Query: 158 SYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
             T   V+ AC     +  G +L   ++ + G+   +     +VD+Y +   +  A +L 
Sbjct: 455 GVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELI 514

Query: 217 DQMP-TRDLVTWTVMIGANKFLLDVILG 243
           + MP   +++ W  ++ A +   +  LG
Sbjct: 515 ETMPFAPNVIIWGSLMSACQVHGEAELG 542


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/572 (35%), Positives = 312/572 (54%), Gaps = 57/572 (9%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F + + SC +  Q+    Q H   +  G + +  V N L+ +Y+    +  A +++  + 
Sbjct: 132 FATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVP 191

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             D  S+++++ G  +        E     +   +  D+ T       C   KD+ +G  
Sbjct: 192 GLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQ 251

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------- 230
           +H  + ++G + D FV +A++DMY KC  I +AR++F+++ T+++V+WT +         
Sbjct: 252 VHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGC 311

Query: 231 -----------------------------------IGANKFLLD----------VILGTA 245
                                              +G  K L            +I+G A
Sbjct: 312 FEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA 371

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I+MY+K GSI++A ++F  M  ++ I+WSAMI    +HG G++AL +F  ML+++  P+
Sbjct: 372 LINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPH 431

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            +TFV +L AC+H G V+EG    + +     + P V+HYTC+V LL +AGRLDEA   +
Sbjct: 432 YVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFM 491

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
           +S  V+ D   W  LL AC +H+N  L +  A+ +L+  P + G Y+LLSN+YA A RW 
Sbjct: 492 KSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWD 551

Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG 485
            V KIR LM  R +KK PG +WIE+ N IH F     THP+S +IY  +  L   +   G
Sbjct: 552 GVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMG 611

Query: 486 YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           Y+PD     HDV++E K   +  HSEKLAIA+GL+ TP G  IR++KNLR+C DCHS +K
Sbjct: 612 YVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVK 671

Query: 546 HVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +S +T R+IIVRDANRFH F  G CSC DYW
Sbjct: 672 LISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 175/372 (47%), Gaps = 67/372 (18%)

Query: 71  RNIFQIRQVHAQIVAGGTLT--NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           +N+   + +HA ++     T  N++  N L+ +YA    +  A  LF+GM++R+ VSW  
Sbjct: 39  KNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGA 98

Query: 129 MVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           ++ G+      +     F+  I    M+ + Y    +I +C D   +V G   H   LKS
Sbjct: 99  LMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKS 158

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------- 231
           GL   Q+V  AL+ MY++   +  A  ++ ++P  D+ ++ ++I                
Sbjct: 159 GLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVL 218

Query: 232 -------------------GANKFLLDVILG-------------------TAVIDMYAKC 253
                              G    L D+ LG                   +A+IDMY KC
Sbjct: 219 DRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKC 278

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G+I +AR++F+R++ KNV+SW+A++AAY  +G  ++AL+ FP M    +LPN  TF  LL
Sbjct: 279 GNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLL 338

Query: 314 YACSHTGLVEEG----LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            +C+    +  G     R+  S ++D  +  +      ++++  ++G ++ A K+   M 
Sbjct: 339 NSCAGISALGHGKLLHTRIKKSGFEDHIIVGNA-----LINMYSKSGSIEAAHKVFLEM- 392

Query: 370 VEKDEGLWGALL 381
           + +D   W A++
Sbjct: 393 ICRDSITWSAMI 404


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/501 (37%), Positives = 299/501 (59%), Gaps = 14/501 (2%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVH  ++  G  ++  V + +L +Y     + +   +F+ ++E +  S +  + G S+  
Sbjct: 261 QVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNG 320

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                 E F +F    M+L+  T   +I +C ++ KD+    L  D+    G++ +    
Sbjct: 321 MVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQ-AYGVEPNAVTI 379

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
            +L+        +         M  +++  +++  G      DV +G+A+IDMYAKCG I
Sbjct: 380 PSLIPACGNISAL---------MHGKEIHCFSLRRG---IFDDVYVGSALIDMYAKCGRI 427

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             AR  FD+M   N++SW+A++  Y  HG+ K+ +++F MML S   P+ +TF  +L AC
Sbjct: 428 QLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSAC 487

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           +  GL EEG R ++SM ++  + P ++HY C+V LL R G+L+EA  +I+ M  E D  +
Sbjct: 488 AQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACV 547

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL +CR+H N+ L E+AA+ L   +P NPG+Y+LLSN+YA+ G W +  +IR++M  
Sbjct: 548 WGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKS 607

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + L+K PG++WIEV +K+H    GD +HPQ ++I   L  L+ +++ +GY+P TNF L D
Sbjct: 608 KGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYLPKTNFVLQD 667

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V+E+ K   L  HSEKLA+  GL+ T  G  ++++KNLR+C DCH+ IK +S +  R I 
Sbjct: 668 VEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVISRLEGREIY 727

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF+ G CSC D+W
Sbjct: 728 VRDTNRFHHFKDGVCSCGDFW 748



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 174/368 (47%), Gaps = 69/368 (18%)

Query: 45  PMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL 104
           P+++ PD     S      I S  S R +   +Q+HA   A G LT+ IVA+ L ++Y  
Sbjct: 97  PLRLIPDAFLLPSA-----IKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLK 151

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSK----------------------------- 135
              + DA  LF+ M +RD V WS M+ G+S+                             
Sbjct: 152 CDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGM 211

Query: 136 VADFIN------CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           +A F N          FR  +  G   D  T+  V+ A    +D+V+G  +H  V+K GL
Sbjct: 212 LAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGL 271

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249
             D+FV +A++DMY KC  + +  ++FD++   ++ +       N FL  +         
Sbjct: 272 GSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSL------NAFLTGL--------- 316

Query: 250 YAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
            ++ G +D+A E+F++ + +    NV++W+++IA+   +G+  +AL+LF  M +  V PN
Sbjct: 317 -SRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPN 375

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEA 361
            +T  SL+ AC +   +  G  +       F++R     DV   + ++D+  + GR+  A
Sbjct: 376 AVTIPSLIPACGNISALMHGKEIHC-----FSLRRGIFDDVYVGSALIDMYAKCGRIQLA 430

Query: 362 LKLIESMS 369
            +  + MS
Sbjct: 431 RRCFDKMS 438



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 155/343 (45%), Gaps = 47/343 (13%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH---ALFNGMKERDSVS 125
           S  ++ Q RQ HA I+     ++  +   LL  YA   +L+       L + +      S
Sbjct: 12  STASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFS 71

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           +S ++  F++   F +   TF       +  D++ LP  I++C   + +  G+ +H    
Sbjct: 72  FSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAA 131

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245
            SG   D  V ++L  MY KC  I DAR+LFD+MP RD+V W+ MI              
Sbjct: 132 ASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAG------------ 179

Query: 246 VIDMYAKCGSIDSAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
               Y++ G ++ A+E+F  MR    + N++SW+ M+A +G +G   +A+ +F MML   
Sbjct: 180 ----YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQG 235

Query: 302 VLPNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
             P+  T   +L A             H  ++++GL       D F V       + M+D
Sbjct: 236 FWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLG-----SDKFVV-------SAMLD 283

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           + G+ G + E  ++ + +  E + G   A L     +  VD A
Sbjct: 284 MYGKCGCVKEMSRVFDEVE-EMEIGSLNAFLTGLSRNGMVDTA 325



 Score = 45.8 bits (107), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 6/186 (3%)

Query: 64  ISSLL-SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           I SL+ +C NI  +   +++H   +  G   ++ V + L+ +YA    +  A   F+ M 
Sbjct: 379 IPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMS 438

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-R 178
             + VSW+ ++ G++         E F   ++ G + D  T   V+ AC        G R
Sbjct: 439 ALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWR 498

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFL 237
             + +  + G++      A LV + ++   +++A  +  +MP   D   W  ++ + +  
Sbjct: 499 CYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVH 558

Query: 238 LDVILG 243
            ++ LG
Sbjct: 559 NNLSLG 564


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 319/574 (55%), Gaps = 56/574 (9%)

Query: 58  VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           VD    +S L++C NI  +   R +H   V       ++ +N LL +Y+    L  A  +
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 353

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M +   VSW+ ++  + +   + +    F E    G++ D YT+  ++ AC     +
Sbjct: 354 FVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 413

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIGA 233
             GR +H  V+K+G+  +  V  AL++MYAKC  +++AR +F ++P +D+V+W T++ G 
Sbjct: 414 DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 473

Query: 234 NKFLL----------------------------------------------------DVI 241
           ++ LL                                                    D+ 
Sbjct: 474 SQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH 533

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  A++DMYAKCG +  A+ +FD + +K++ISW+ MIA YG HG G +A+  F  M  + 
Sbjct: 534 VACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAG 593

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+  +F ++L ACSH+GL+ EG + F+SM ++  V P ++HY C+VDLL R G L +A
Sbjct: 594 IEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKA 653

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            K IESM ++ D  +WG LL  CRIH +V LAE  A+ + E +P N  +YV+L+NVYA A
Sbjct: 654 YKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEA 713

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            +W++V K+R  M +R  K+ PG +WIEV  K + F  G+S HPQ+++I  +L  L+ ++
Sbjct: 714 EKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQM 773

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +   Y     + L + D+  K      HSEK A+AFG++  P G  +R+ KN RVCGDCH
Sbjct: 774 QNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCH 833

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
              K +S  T+  I++RD+NRFHHF+ G CSCRD
Sbjct: 834 EMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 161/361 (44%), Gaps = 56/361 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VH+ I++ G   +  +  KL+++Y     L     +F+ +       W++++  ++K+
Sbjct: 114 KRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI 173

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +F      F++  + G+  + YT   V++       +   + +H  VLK G   +  V 
Sbjct: 174 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 233

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLLDVILGTA 245
            +L+  Y K   ++ A  LFD++   D+V+W  MI           G   F+  +ILG  
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293

Query: 246 V-------------------------------------------IDMYAKCGSIDSAREI 262
           V                                           +DMY+KCG+++ A E+
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 353

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F +M    ++SW+++IAAY   G    A+ LF  M S  V P+  T  S+++AC+ +  +
Sbjct: 354 FVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 413

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G  + S +  +  +  ++     ++++  + G ++EA +L+ S    KD   W  ++G
Sbjct: 414 DKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEA-RLVFSKIPVKDIVSWNTMIG 471

Query: 383 A 383
            
Sbjct: 472 G 472



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 161/397 (40%), Gaps = 88/397 (22%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           + ++VH  ++  G  +N  V N L+  Y     +  AH LF+ + E D VSW+ M+ G  
Sbjct: 213 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 272

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                 N  E F + +  G+++D  TL  V+ AC +  ++ +GR +H   +K+    +  
Sbjct: 273 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVV 332

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------NK 235
               L+DMY+KC  ++ A ++F +M    +V+WT +I A                     
Sbjct: 333 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 236 FLLDVILGTAVIDMYAKCGSIDSARE---------------------------------- 261
              D+   T+++   A   S+D  R+                                  
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 452

Query: 262 -IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F ++  K+++SW+ MI  Y  +    +AL+LF + +  +  P+ IT   +L AC+   
Sbjct: 453 LVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELF-LDMQKQFKPDDITMACVLPACAGLA 511

Query: 321 LVEE------------------------------GLRLFSSMWDDFAVRPDVKHYTCMVD 350
            +++                              GL + + +  D   + D+  +T M+ 
Sbjct: 512 ALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 571

Query: 351 LLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
             G  G  +EA+     M    +E DE  + A+L AC
Sbjct: 572 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNAC 608



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 121/293 (41%), Gaps = 57/293 (19%)

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           +  F ++ D  N  E   +     + L+SY    V++ C ++K +  G+ +H +++ +G+
Sbjct: 68  INKFCEMGDLRNAIELLTKSKSYELGLNSYCS--VLQLCAEKKSLEDGKRVHSVIISNGI 125

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------------- 232
            +D+ + A LV MY  C  +   R++FD++    +  W +++                  
Sbjct: 126 SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKK 185

Query: 233 -------ANKFLLDVIL--------------------------GTAVID----MYAKCGS 255
                   N +    +L                           TAV++     Y K G 
Sbjct: 186 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGG 245

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           ++SA  +FD + + +V+SW++MI     +G     L++F  ML   V  +  T VS+L A
Sbjct: 246 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 305

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           C++ G +  G R             +V     ++D+  + G L+ A ++   M
Sbjct: 306 CANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 302/556 (54%), Gaps = 90/556 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H  I+    L N+ + N L  +YA    +  A  LF+ + +++ VSW++M+ G++K 
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                C                                    L+H + L SG   DQ   
Sbjct: 235 GQPEKCIG----------------------------------LLHQMRL-SGHMPDQVTM 259

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------NKFLLD--- 239
           + ++  Y +C  +D+AR++F +   +D+V WT M+                N+ LL+   
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE 319

Query: 240 -------------------------------------VILGTAVIDMYAKCGSIDSAREI 262
                                                +++ +A+IDMY+KCG ID AR +
Sbjct: 320 PDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSV 379

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M  +NV+SW+AMI     +G  K AL+LF  ML  +  P+ +TF+ +L AC H   +
Sbjct: 380 FNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWI 439

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E+G   F S+ +   + P + HY CMV+LLGR GR+++A+ LI++M+ + D  +W  LL 
Sbjct: 440 EQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            C    ++  AE+AA+ L E  P     Y++LSN+YA+ GRW+DVA +R+LM  + +KK 
Sbjct: 500 ICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKF 559

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G++WIE++N++H+F+  D THP+SE+IY  L  L  KL+  G+ P+TN  LHDV E+ K
Sbjct: 560 AGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEK 619

Query: 503 VGNLYSHSEKLAIAFGLIATPEG-THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
             ++  HSEKLA+AFGLI  P G + IRI+KN+R+C DCH F+K  S I  R II+RD+N
Sbjct: 620 FKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSN 679

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC D W
Sbjct: 680 RFHHFSTGKCSCNDNW 695



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 31/313 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N LL  YA   ++ +  A F+ M  RDSVS++  + GFS  +      E F+   R G +
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
              YT+  ++ A     D+  G+ IH  ++      + F+  AL DMYAKC  I+ AR L
Sbjct: 153 PTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 216 FDQMPTRDLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSI 256
           FD +  ++LV+W +MI                     +  + D +  + +I  Y +CG +
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           D AR +F   ++K+++ W+AM+  Y  +G+ + AL LF  ML   + P+  T  S++ +C
Sbjct: 273 DEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332

Query: 317 S-----HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +     H G    G  + + + ++  V       + ++D+  + G +D+A  +   M   
Sbjct: 333 AKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCGFIDDARSVFNLMPT- 385

Query: 372 KDEGLWGALLGAC 384
           ++   W A++  C
Sbjct: 386 RNVVSWNAMIVGC 398



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 87/181 (48%), Gaps = 23/181 (12%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D F+   L+ +YAK   + DA+ LFD+M  RD  +W  ++ A                YA
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSA----------------YA 100

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           K GSI + +  FDRM  ++ +S++  IA +  +   +++L+LF  M      P   T VS
Sbjct: 101 KSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVS 160

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRP---DVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +L A +    +  G ++  S+     VR    +V  +  + D+  + G +++A  L + +
Sbjct: 161 ILNASAQLLDLRYGKQIHGSI----IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCL 216

Query: 369 S 369
           +
Sbjct: 217 T 217



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 32/273 (11%)

Query: 24  TTAAIALEPHGHEQNPM---NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVH 80
           T   +    +G E++ +   N  +   + PD     SV     +SS     ++   + VH
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV-----VSSCAKLASLHHGQAVH 345

Query: 81  AQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFI 140
            + +  G   NL+V++ L+ +Y+    + DA ++FN M  R+ VSW+ M+ G ++     
Sbjct: 346 GKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDK 405

Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD-IVLKSGL--DIDQFVCA 197
           +  E F   ++   + D+ T   ++ AC     I  G+   D I  + G+   +D + C 
Sbjct: 406 DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYAC- 464

Query: 198 ALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMI---------------GANKFLLDVI 241
            +V++  +   I+ A  L   M    D + W+ ++                 + F LD  
Sbjct: 465 -MVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 242 LGTAVI---DMYAKCGSIDSAREIFDRMRQKNV 271
           +    I   +MYA  G       + + M+ KNV
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/464 (42%), Positives = 278/464 (59%), Gaps = 47/464 (10%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M ERD VSW+ M+G   +V+ F    E FRE    G+  D  T+  +  AC     
Sbjct: 420 IFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC----- 474

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
              G L         LD+ ++VC                                  I  
Sbjct: 475 ---GYL-------GALDLAKWVC--------------------------------TYIEK 492

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
           N   +D+ LGTA++DM+++CG   SA  +F RM +++V +W+A I      G  + A++L
Sbjct: 493 NDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIEL 552

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  ML  +V P+ + FV+LL ACSH G V++G +LF SM     +RP + HY CMVDLLG
Sbjct: 553 FNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLG 612

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           RAG L+EA+ LI+SM +E ++ +WG+LL ACR HKNV+LA  AA+ L +  P+  G +VL
Sbjct: 613 RAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVL 672

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           LSN+YA+AG+W DVA++R  M  + ++K+PG + IEV+  IH+F+ GD +H ++  I  M
Sbjct: 673 LSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLM 732

Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
           L  ++ +L  AGY+PDT   L DVDE+ K   L  HSEKLA+A+GLI T +G  IR++KN
Sbjct: 733 LEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKN 792

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LR+C DCHSF K VS +  R I VRD NR+H F+ G CSCRDYW
Sbjct: 793 LRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 185/436 (42%), Gaps = 91/436 (20%)

Query: 58  VDPKFFISSLLS-CRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           V  K+    LLS C  I  +    QVH  ++  G   ++ V+N L++ YA    +     
Sbjct: 127 VPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRK 186

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           LF+GM ER+ VSW+ ++ G+S           F +    G++ +  T+  VI AC   KD
Sbjct: 187 LFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKD 246

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVM-- 230
           + +G+ +   + + G+++   +  ALVDMY KC  I  ARQ+FD+   ++LV + T+M  
Sbjct: 247 LELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSN 306

Query: 231 --------------------------------IGANKFLLDVILG--------------- 243
                                           I A   L D+ +G               
Sbjct: 307 YVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGW 366

Query: 244 ----TAVIDMYAKCGSIDSARE-------------------------------IFDRMRQ 268
                A+IDMY KCG  ++A +                               IFD M +
Sbjct: 367 DNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLE 426

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           ++++SW+ MI A       ++A++LF  M +  +  +R+T V +  AC + G ++   + 
Sbjct: 427 RDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLA-KW 485

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
             +  +   +  D++  T +VD+  R G    A+ + + M  ++D   W A +G   +  
Sbjct: 486 VCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMAMEG 544

Query: 389 NVDLAEMAAKSLLERQ 404
           N + A      +LE++
Sbjct: 545 NTEGAIELFNEMLEQK 560



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 175/428 (40%), Gaps = 81/428 (18%)

Query: 44  VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN--KLLYI 101
           VP  +      TR+   K     L++C+ + +++Q+H  ++  G L +   +N  KL+  
Sbjct: 13  VPASLKEANPITRNSSSKL----LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIAS 68

Query: 102 YALHKALTDAHALFNGMKERDS-----VSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
                 L       N   + D        ++ ++ G++           + + +  G+  
Sbjct: 69  SVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVP 128

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D YT PF++ AC     +  G  +H  VLK GL+ D FV  +L+  YA+C  +D  R+LF
Sbjct: 129 DKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLF 188

Query: 217 DQMPTRDLV-----------------------------------TWTVMIGANKFLLDVI 241
           D M  R++V                                   T   +I A   L D+ 
Sbjct: 189 DGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLE 248

Query: 242 LG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
           LG                    A++DMY KCG I +AR+IFD    KN++ ++ +++ Y 
Sbjct: 249 LGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYV 308

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-------LRLFSSMWDD 335
           +H      L +   ML     P+++T +S + AC+  G +  G       LR     WD+
Sbjct: 309 HHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN 368

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
            +          ++D+  + G+ + A K+ E M   K    W +L+       +++LA  
Sbjct: 369 IS--------NAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWR 419

Query: 396 AAKSLLER 403
               +LER
Sbjct: 420 IFDEMLER 427


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 312/603 (51%), Gaps = 92/603 (15%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           +S L SC    +  ++HA ++  G L  T+  VA +L   YA    L  + AL    ++ 
Sbjct: 293 VSLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDP 352

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            ++ ++  +   S     +       + +  G+   ++TL   + ACR    +  GR +H
Sbjct: 353 TAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRG---LSPGRALH 409

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCK--------------------------------VI 209
               K  L  D +V  AL+ MYA+                                   +
Sbjct: 410 GYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469

Query: 210 DDARQLFDQMPTRDLVTWTV--------------------MIGAN--------------- 234
           DDAR LFD +PT+D V W                      M+G+                
Sbjct: 470 DDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAV 529

Query: 235 --------------------KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                               +  L V +GTA+IDMY KCGS+  A ++F  +  K+++ W
Sbjct: 530 AQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVW 589

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  Y  HG  +KAL++F       + P  ITF+ LL ACSH+G+VEEG   F SM  
Sbjct: 590 NAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMER 649

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           ++ + P ++HY CMVDLLGRAG + EA  L++SM +  D  +W +LL ACR+HKN+ L +
Sbjct: 650 EYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQ 709

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
             A  L+ +   N G Y+LLSN+YA  G W +VA++R +M    ++K PG + IE++ ++
Sbjct: 710 QIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREV 769

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           ++F  GD +HP+++EIY ML  ++  ++  G++P T   LHD+DE  K   L  HSEKLA
Sbjct: 770 YEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLA 829

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           +AFGLI+T  G  I+I+KNLR C DCH+ +K +S IT R I+ RD NRFHHF  G+CSC 
Sbjct: 830 LAFGLISTQPGATIKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCG 889

Query: 575 DYW 577
           DYW
Sbjct: 890 DYW 892


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 308/541 (56%), Gaps = 60/541 (11%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    L+  Y     +  A  LF+ +  +D VSW+ M+ G+ +  ++    E F+E +
Sbjct: 154 DVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMM 213

Query: 151 R-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
               ++ D  T+  V+ AC     I +GR +H  +   G   +  +  AL+D+Y+K   +
Sbjct: 214 MMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEV 273

Query: 210 DDARQLFDQMPTRDLVTWTVMIGA------------------------------------ 233
           + A +LFD +  +D+++W  +IG                                     
Sbjct: 274 ETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 333

Query: 234 ----------------NKFLLDVI-----LGTAVIDMYAKCGSIDSAREIFDR-MRQKNV 271
                           NK L  V+     L T++IDMYAKCG ID+A+++FD  M  +++
Sbjct: 334 AHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSL 393

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            +W+AMI+ +  HG+   A D+F  M  + + P+ ITFV LL ACSH+G+++ G  +F S
Sbjct: 394 STWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRS 453

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M   + + P ++HY CM+DLLG +G   EA ++I +M +E D  +W +LL AC+IH N++
Sbjct: 454 MTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 513

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL-KKIPGWTWIEV 450
           L E  AK L++ +P N G YVLLSN+YA AGRW +VAKIR L+  + + KK+PG + IE+
Sbjct: 514 LGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEI 573

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           ++ +H+F +GD  HPQ+ EIY ML  +   LE AG++PDT+  L +++EE + G L  HS
Sbjct: 574 DSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHS 633

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGLI+T  GT + IMKNLRVC +CH   K +S I +R II RD  RF HF  G 
Sbjct: 634 EKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGV 693

Query: 571 C 571
           C
Sbjct: 694 C 694



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 182/361 (50%), Gaps = 30/361 (8%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHK---ALTDAHALFNGMKERDSVSWSVMVG 131
            +R +HAQ++  G        +KLL    +         A ++F+ ++E + + W+ M  
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           G +  +D ++  + +   I  G+  DSYT PF++++C   K    G+ IH  VLK G D+
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL 122

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D +V  +L+ MYA+   ++DAR++FD    RD+V++T +I                  Y 
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAG----------------YV 166

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFV 310
             G I+SA+++FD +  K+V+SW+AMI+ Y   G  K+AL+LF  MM+ + V P+  T V
Sbjct: 167 SRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMV 226

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           +++ AC+ +  +E G R   S  +D     ++K    ++DL  + G ++ A +L + +  
Sbjct: 227 TVVSACAQSDSIELG-RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL-W 284

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA-------GR 423
            KD   W  L+G    H N+    +     + R  + P    +LS + A A       GR
Sbjct: 285 NKDVISWNTLIGG-YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 343

Query: 424 W 424
           W
Sbjct: 344 W 344


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 302/556 (54%), Gaps = 90/556 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H  I+    L N+ + N L  +YA    +  A  LF+ + +++ VSW++M+ G++K 
Sbjct: 175 KQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKN 234

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                C                                    L+H + L SG   DQ   
Sbjct: 235 GQPEKCIG----------------------------------LLHQMRL-SGHMPDQVTM 259

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------NKFLLD--- 239
           + ++  Y +C  +D+AR++F +   +D+V WT M+                N+ LL+   
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE 319

Query: 240 -------------------------------------VILGTAVIDMYAKCGSIDSAREI 262
                                                +++ +A+IDMY+KCG ID AR +
Sbjct: 320 PDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSV 379

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M  +NV+SW+AMI     +G  K AL+LF  ML  +  P+ +TF+ +L AC H   +
Sbjct: 380 FNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWI 439

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           E+G   F S+ +   + P + HY CMV+LLGR GR+++A+ LI++M+ + D  +W  LL 
Sbjct: 440 EQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLS 499

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            C    ++  AE+AA+ L E  P     Y++LSN+YA+ GRW+DVA +R+LM  + +KK 
Sbjct: 500 ICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKF 559

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
            G++WIE++N++H+F+  D THP+SE+IY  L  L  KL+  G+ P+TN  LHDV E+ K
Sbjct: 560 AGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEK 619

Query: 503 VGNLYSHSEKLAIAFGLIATPEG-THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
             ++  HSEKLA+AFGLI  P G + IRI+KN+R+C DCH F+K  S I  R II+RD+N
Sbjct: 620 FKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSN 679

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC D W
Sbjct: 680 RFHHFSTGKCSCNDNW 695



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 31/313 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N LL  YA   ++ +  A F+ M  RDSVS++  + GFS  +      E F+   R G +
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFE 152

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
              YT+  ++ A     D+  G+ IH  ++      + F+  AL DMYAKC  I+ AR L
Sbjct: 153 PTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212

Query: 216 FDQMPTRDLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSI 256
           FD +  ++LV+W +MI                     +  + D +  + +I  Y +CG +
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           D AR +F   ++K+++ W+AM+  Y  +G+ + AL LF  ML   + P+  T  S++ +C
Sbjct: 273 DEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332

Query: 317 S-----HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +     H G    G  + + + ++  V       + ++D+  + G +D+A  +   M   
Sbjct: 333 AKLASLHHGQAVHGKSILAGLNNNLLVS------SALIDMYSKCGFIDDARSVFNLMPT- 385

Query: 372 KDEGLWGALLGAC 384
           ++   W A++  C
Sbjct: 386 RNVVSWNAMIVGC 398



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 88/181 (48%), Gaps = 23/181 (12%)

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D F+   L+ +YAK   + DA+ LFD+M  RD+ +W  ++ A                YA
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSA----------------YA 100

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           K GSI + +  FDRM  ++ +S++  IA +  +   +++L+LF  M      P   T VS
Sbjct: 101 KSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVS 160

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRP---DVKHYTCMVDLLGRAGRLDEALKLIESM 368
           +L A +    +  G ++  S+     VR    +V  +  + D+  + G +++A  L + +
Sbjct: 161 ILNASAQLSDLRYGKQIHGSI----IVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCL 216

Query: 369 S 369
           +
Sbjct: 217 T 217



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 32/273 (11%)

Query: 24  TTAAIALEPHGHEQNPM---NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVH 80
           T   +    +G E++ +   N  +   + PD     SV     +SS     ++   + VH
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV-----VSSCAKLASLHHGQAVH 345

Query: 81  AQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFI 140
            + +  G   NL+V++ L+ +Y+    + DA ++FN M  R+ VSW+ M+ G ++     
Sbjct: 346 GKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDK 405

Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD-IVLKSGL--DIDQFVCA 197
           +  E F   ++   + D+ T   ++ AC     I  G+   D I  + G+   +D + C 
Sbjct: 406 DALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYAC- 464

Query: 198 ALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMI---------------GANKFLLDVI 241
            +V++  +   I+ A  L   M    D + W+ ++                 + F LD  
Sbjct: 465 -MVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 242 LGTAVI---DMYAKCGSIDSAREIFDRMRQKNV 271
           +    I   +MYA  G       + + M+ KNV
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 268/467 (57%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+GM +RD V+W+ M+ G+            F E    G  +   TL   + AC  
Sbjct: 280 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 339

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+ +H      G+                                         
Sbjct: 340 LGALERGKWVHSCAHSRGMR---------------------------------------- 359

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                  L V LGTA+IDMY+KCG++ +A E+FD M ++NV +W++ ++    +G G+  
Sbjct: 360 -------LSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDC 412

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M S+ V PN +TFV +L  CS  GLV+EG   F SM  +  + P ++HY CMVD
Sbjct: 413 LALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVD 472

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L GRAGRLD+A+  I  M +E  EG+WGALL A RIHKNV+L + A   L+  + +N   
Sbjct: 473 LYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAA 532

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           +VLLSN+YA++  W+ V+ +R++M  + +KK+PG + IEV  K+H+F VG  THP+ +EI
Sbjct: 533 HVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEI 592

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
             ML  ++++L L GYI +T   L D++EE K   +  HSEKLAIAFGL+A PE   IRI
Sbjct: 593 EMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRI 652

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCH + K +S +  R I++RD NRFHHF+ GACSC+DYW
Sbjct: 653 VKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 699



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL--------IHDIVLKSGLDIDQF 194
           F  FR+     +  D+Y+  F++RA           L        +H   L+ G   D  
Sbjct: 175 FGAFRDLP---LAPDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPH 231

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V +  V MYA    +  AR  F ++ + D+V  T M+GA                 A  G
Sbjct: 232 VQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGA----------------LATGG 275

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
             D+ARE+FD M Q++ ++W+AMIA Y + G+ ++AL LF  M  +      +T VS L 
Sbjct: 276 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 335

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC+  G +E G +   S      +R  V   T ++D+  + G +  A+++ +SM  E++ 
Sbjct: 336 ACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG-ERNV 393

Query: 375 GLW 377
             W
Sbjct: 394 YTW 396



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 13/232 (5%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            +S+L +C  +  + +   VH+   + G   ++ +   L+ +Y+   A+  A  +F+ M 
Sbjct: 330 LVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG 389

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+  +W+  V G +      +C   F+     G++ +  T   V+R C     +  GR 
Sbjct: 390 ERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRA 449

Query: 180 IHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTVMIGANKF 236
             D  +KS   ID ++     +VD+Y +   +DDA    + MP       W  ++ A++ 
Sbjct: 450 CFD-SMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRI 508

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIF------DRMRQKNVISWSAMIAAYG 282
             +V LG   +D      S + A  +       D    K V +   M+ A G
Sbjct: 509 HKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKG 560


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/556 (37%), Positives = 305/556 (54%), Gaps = 56/556 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H   V  G    L VA+ L  +Y+    L +A  +F+ M ++D+V+W+ M+ G++K  
Sbjct: 140 QLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNG 199

Query: 138 DFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           +       FR+  R G+   D + L  V+ A    KD  + R IH  V+KSG + +  V 
Sbjct: 200 NLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVR 259

Query: 197 AALVDMYAKCKVIDDARQ----------------LFDQMPTRDLV--------------- 225
            AL DMYAK   +D+A +                L D     D +               
Sbjct: 260 NALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGV 319

Query: 226 -----TWTVMI-----------GAN--------KFLLDVILGTAVIDMYAKCGSIDSARE 261
                T++ MI           GA           + D  + + ++DMY KCG I  + +
Sbjct: 320 EPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQ 379

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  +     I+W+A I     HG G++A+  F  M SS + PN ITFVSLL ACSH GL
Sbjct: 380 LFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGL 439

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+EGL+ F SM D   + P  +HY+C++D+ GRAGRLDEA K I  M V+ +   W +LL
Sbjct: 440 VDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLL 499

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+  N +L E+AA ++++ +P N G +V LS +YA+ G+W+DV  +R LM   R+KK
Sbjct: 500 GACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKK 559

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           +PG++W++   K H F   D +HPQ E+IY  L  L E+++  GY+PDT F   ++++  
Sbjct: 560 LPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTA 619

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSE++A+AF LI+ P    I + KNLR+C DCHS +K +S +  R IIVRD +
Sbjct: 620 KQRILRYHSERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNS 679

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 680 RFHHFVKGGCSCGDYW 695



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 172/399 (43%), Gaps = 67/399 (16%)

Query: 53  QFTRSVDPKFFI---SSLLSCRNIFQIRQ---VHAQIV-AGGTLTNLIVANKLLYIYALH 105
           Q +RS+D    +   + L SC     +R    +HA++V +G    +  +AN L+ +Y+  
Sbjct: 7   QHSRSLDTATSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHC 66

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             +  A  LF+ M   + VSW+ +V G ++ +   +    F    R G+    + L    
Sbjct: 67  ADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAA 126

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           RA         G  +H + ++ G D + FV + L DMY+K  ++ +A ++FDQMP +D V
Sbjct: 127 RAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAV 186

Query: 226 TWTVMI-------------------------GANKFLL---------------------- 238
            WT MI                         GA++ +L                      
Sbjct: 187 AWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSC 246

Query: 239 --------DVILGTAVIDMYAKCGSIDSAREIFDRMRQK--NVISWSAMIAAYGYHGQGK 288
                   +V +  A+ DMYAK   +D+A  +  ++ Q   NV+S +++I  Y      +
Sbjct: 247 VMKSGFEQEVAVRNALTDMYAKAADMDNAARVV-KIDQGSLNVVSATSLIDGYIETDCIE 305

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           KAL +F  +    V PN  TF S++  C+   L+E+G +L + +     +       T +
Sbjct: 306 KALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSST-L 364

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           +D+ G+ G +  +++L + +    D   W A +     H
Sbjct: 365 LDMYGKCGLISLSIQLFKEIEYHTDIA-WNAAINVLAQH 402


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/539 (36%), Positives = 304/539 (56%), Gaps = 59/539 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+H   V  G   +  V N++L+ Y+ H  + +   LFN M E D VS++V++  +S+ 
Sbjct: 264 QQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQA 323

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
             +      FRE ++C M  D    PF  ++    +   + +GR +H   + +  D    
Sbjct: 324 EQYEESLNLFRE-MQC-MGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILH 381

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------------GAN 234
           V  +LVDMYAKC++ D+A  +F  +  R  V+WT +I                    GAN
Sbjct: 382 VGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGAN 441

Query: 235 ----------------------------KFLL------DVILGTAVIDMYAKCGSIDSAR 260
                                        F++      +V  G+ ++DMYAKCGSI  A 
Sbjct: 442 LRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 501

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           ++F+ M  +N +SW+A+I+AY  +G G+ A+  F  M+ S + P+ ++ + +L ACSH G
Sbjct: 502 QVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCG 561

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VE+G   F +M   + + P  KHY CM+DLLGR GR  EA KL++ M  E DE +W ++
Sbjct: 562 FVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 621

Query: 381 LGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           L ACRI+KN  LAE AA+ L   +  ++   YV +SN+YA AG+W++V  ++  M  R +
Sbjct: 622 LNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGI 681

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK+P ++W+EV +KIH FS  D THP  +EI + +  L+ ++E  GY PDT+  + D+DE
Sbjct: 682 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDE 741

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           ++K+ +L  HSE+LA+AF LI+TPEG  I +MKNLR C DCH+ IK +S I +RVI  +
Sbjct: 742 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 164/371 (44%), Gaps = 72/371 (19%)

Query: 76  IRQVHAQIVAGGTLTNLI--VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           + QVHA  V  G  TNL   V N LL  Y   + L  A  LF  + ++DSV+++ ++ G+
Sbjct: 160 VGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGY 219

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            K   +      F +  + G +   +T   V++A     D  +G+ +H + + +G   D 
Sbjct: 220 EKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDA 279

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM----------------------- 230
            V   ++  Y+K   + + R LF++MP  D V++ V+                       
Sbjct: 280 SVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCM 339

Query: 231 --------------IGANKFLLDV--------ILGTA---------VIDMYAKCGSIDSA 259
                         I AN   L V        I+ TA         ++DMYAKC   D A
Sbjct: 340 GFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEA 399

Query: 260 REIFDRMRQKNVISWSAMIAAY---GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             IF  + Q++ +SW+A+I+ Y   G HG G   L LF  M  + +  ++ TF ++L A 
Sbjct: 400 ELIFKSLSQRSTVSWTALISGYVQKGLHGAG---LKLFTKMRGANLRADQSTFATVLKAS 456

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           +    +  G +L +     F +R     +V   + +VD+  + G + +A+++ E M  ++
Sbjct: 457 AGFASLLLGKQLHA-----FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DR 510

Query: 373 DEGLWGALLGA 383
           +   W AL+ A
Sbjct: 511 NAVSWNALISA 521



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 156/394 (39%), Gaps = 70/394 (17%)

Query: 55  TRSVDPKFFISSLLS--CRNIFQIRQV--HAQIVAGGTL------TNLIVANKLLYIYAL 104
           TR VD +   +   +  CR+ F +  +    Q+ A   +       N +  N ++  Y  
Sbjct: 28  TRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVK 87

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
              L+ A  LF+ M +R  V+W++++G ++    F   F+ FR+  R     D  T   +
Sbjct: 88  MGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTL 147

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQF--VCAALVDMYAKCKVIDDARQLFDQMPTR 222
           +  C D         +H   +K G D + F  VC  L+  Y + + +D A  LF+++  +
Sbjct: 148 LPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDK 207

Query: 223 DLVTWTVMI---------------------------------------GANKFLL----- 238
           D VT+  +I                                       G + F L     
Sbjct: 208 DSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLH 267

Query: 239 ----------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                     D  +G  ++  Y+K   +   R +F+ M + + +S++ +I++Y    Q +
Sbjct: 268 GLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYE 327

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TC 347
           ++L+LF  M           F ++L   ++   ++ G ++        A    + H    
Sbjct: 328 ESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAI--VATADSILHVGNS 385

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +VD+  +    DEA  + +S+S ++    W AL+
Sbjct: 386 LVDMYAKCEMFDEAELIFKSLS-QRSTVSWTALI 418


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/621 (34%), Positives = 322/621 (51%), Gaps = 87/621 (14%)

Query: 44  VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
            P+   P  Q +   +    +  L  C N+ ++RQ+H Q++  G + + I A+KLL   A
Sbjct: 2   APILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61

Query: 104 LHKA--LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
              +  L  A  +F+ +   ++  W+ M+ G+S   +       +   +   +  ++YT 
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ--- 218
           PF+++AC     +   + IH  ++K G   + +   +L+++Y+K   I  AR LFDQ   
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 219 ----------------------------MPTRDLVTWTVMI----GANK----------- 235
                                       MP R++++WT MI    GA K           
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 236 ---------------------------------------FLLDVILGTAVIDMYAKCGSI 256
                                                    +D ILG  +IDMYAKCG +
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A E+F +M +K V  W+AMI+ Y  HG+G++AL+ F  M ++ V PN++TF  +L AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLV E   LF SM      +P ++HY CMVDLLGRAG L EA +LIE+M V+ +  +
Sbjct: 362 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 421

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL AC IH N++L +   K L++  P + G Y+ L++++A AG W   A++R  M  
Sbjct: 422 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + + K+PG + I V    H+F  GD +HPQ +EI  ML  + E+L   GY P     L D
Sbjct: 482 QGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLD 541

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++++ K   ++ HSEKLA+ FGLI+T  G  IRI+KNLRVC DCH+ IK +S +  R I+
Sbjct: 542 LEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREIL 601

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RD  RFH F+ G C+C DYW
Sbjct: 602 MRDRTRFHLFKDGNCTCGDYW 622


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 297/516 (57%), Gaps = 62/516 (12%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER--------------- 121
            +Q+H Q++  G L +  V N L+ +Y     +  A  +F  + +                
Sbjct: 540  KQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVV 599

Query: 122  DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            +SVSWS MV G+ +   F +  +TF  F+ C                             
Sbjct: 600  ESVSWSSMVSGYVQNGRFEDALKTF-SFMIC----------------------------- 629

Query: 182  DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
                 S +++D+F   ++V   A   V++  RQ+   +           IG     LDV 
Sbjct: 630  -----SQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQK---------IGHG---LDVF 672

Query: 242  LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            LG+++IDMY KCGS++ A  IF++ + +NV+ W++MI+    HGQG++A+ LF +M++  
Sbjct: 673  LGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEG 732

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            + PN ++FV +L ACSH GL+EEG + F  M + + +RP  +H+TCMVDL GRAGRL+E 
Sbjct: 733  ITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEI 792

Query: 362  LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             + I + ++ K   +W + L +CR+HKN+++     K LLE +P + G Y+L S++ A  
Sbjct: 793  KEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATE 852

Query: 422  GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
             RW++ AKIR LM +R +KK P  +WI+++N++H F +GD +HPQ  +IY  L  L  +L
Sbjct: 853  HRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRL 912

Query: 482  ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
            +  GY  D    + DV++E +   L  HSEKLAIA+G+I+T  GT IR+MKNLRVC DCH
Sbjct: 913  KEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCH 972

Query: 542  SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +FIK+ S +  R II+RD +RFHHF+ G CSC DYW
Sbjct: 973  NFIKYASELLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 148/306 (48%), Gaps = 30/306 (9%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           +F S+     N      +HA+++  G +   I  N LL +YA  + L  AH +F  + + 
Sbjct: 293 YFSSTFSDSMNYPNSEVLHAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQT 350

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR-KDIVMGRLI 180
           D  SW+V++ GF+++    +    F +    G+  + +TL  V+++C     D  +G+ I
Sbjct: 351 DVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGI 410

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H  +L++GLD+D  +  +++D Y KC+    A +LF  M  +D V+W +M+ +       
Sbjct: 411 HGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSS------- 463

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                    Y + G +  + ++F ++  K+  SW+ MI     +G  + AL+L   M+++
Sbjct: 464 ---------YLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAA 514

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFS-----SMWDDFAVRPDVKHYTCMVDLLGRA 355
               N++TF   L   S   ++  G ++ +      + DD  VR        ++D+  + 
Sbjct: 515 GPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVR------NSLIDMYCKC 568

Query: 356 GRLDEA 361
           G +++A
Sbjct: 569 GEMEKA 574



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 61  KFFISSLLSC---RNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           KF ++S++S      + ++ RQVH  I   G   ++ + + ++ +Y    +L DA  +FN
Sbjct: 636 KFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFN 695

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
             K+R+ V W+ M+ G +           F   I  G+  +  +   V+ AC     +  
Sbjct: 696 QAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEE 755

Query: 177 G----RLIHDIV-LKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           G    RL+ ++  ++ G   + F C  +VD+Y +   +++ ++ 
Sbjct: 756 GCKYFRLMREVYGIRPG--AEHFTC--MVDLYGRAGRLNEIKEF 795


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/493 (39%), Positives = 293/493 (59%), Gaps = 26/493 (5%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           +++I  N ++  Y     +  A  LF  M++++  SW+VMV G +K        E F E 
Sbjct: 194 SDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEM 253

Query: 150 -----IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
                I     +D Y      +   +         + +++ +  +   +FV ++++   A
Sbjct: 254 KEKNEISWSAMIDGYIKGGYYKEALE---------VFNVMQREEIRPRKFVLSSVLAACA 304

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
               +D  R +               +  N    D +LGTA++DMYAKCG +D A ++F+
Sbjct: 305 NLGALDQGRWIH------------AYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFE 352

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           +M +K V +W+AMI   G HG+ + A++LF  M   +  PN IT + +L AC+H+G+V+E
Sbjct: 353 KMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDE 412

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           GLR+F+SM + + + P ++HY C+VDLLGRAG L EA +++ SM +E    +WGALLGAC
Sbjct: 413 GLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGAC 472

Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
           R H +V+L E   K LLE +PQN G Y LLSN+YA AGRW DVA +R LM  R +K   G
Sbjct: 473 RKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTG 532

Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
            + I+ +  +H+F +GD +HPQ + IY ML  + ++L++ G+ P+T+  L D++EE K  
Sbjct: 533 ISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEA 592

Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
            L  HSEKLAIAFGLI T  GT I ++KNLR+C DCHS  K +S +  R IIVRD  R+H
Sbjct: 593 ELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYH 652

Query: 565 HFEGGACSCRDYW 577
           HF+ G CSC+D+W
Sbjct: 653 HFKTGTCSCKDFW 665



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 183/389 (47%), Gaps = 24/389 (6%)

Query: 53  QFTRSVDPKFFISSL--LSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKAL 108
           +FT  +  K  +  L   S  ++  ++QVHA  +  G   +  V+  L+  YA      L
Sbjct: 21  KFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNL 80

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
             A  +F  +   +   +++++ G  +  +       + + +    + + +T P + +AC
Sbjct: 81  NFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKAC 140

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
              +    G  +H  V+K GL  D  + +A + MY     ++ AR++  +    D++ + 
Sbjct: 141 TAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFN 200

Query: 229 VMIG---------ANKFLL----DVILGT--AVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
            MI          A K L     D  +G+   ++   AKCG I+ ARE+F+ M++KN IS
Sbjct: 201 AMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEIS 260

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           WSAMI  Y   G  K+AL++F +M    + P +    S+L AC++ G +++G R   +  
Sbjct: 261 WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQG-RWIHAYV 319

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDL 392
           ++ +   D    T +VD+  + GRLD A  + E M  +K+   W A++    +H +  D 
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKME-KKEVFTWNAMICGLGMHGRAEDA 378

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            E+  K  +++Q   P    LL  + A A
Sbjct: 379 IELFFK--MQKQKFRPNGITLLGVLSACA 405


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/528 (39%), Positives = 301/528 (57%), Gaps = 61/528 (11%)

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI---------RCGMQLDSY 159
            D+  LF+ + +R  VSW+ ++ G  +     +    F+E +           G+ +DS 
Sbjct: 30  NDSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSV 89

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
            L  V+ A        +   +H +V+K G +    V   L+D YAK   +  A+ +FD M
Sbjct: 90  LLGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGM 148

Query: 220 PTRDLVTWTVMIGA-------------------------NKFLLD--------------- 239
              D   W  +I                           N  ++D               
Sbjct: 149 NESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHH 208

Query: 240 ----------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                     V +GT+++D+Y KC  ++ AR+ FD M+ KNV SW+AM+A YG HG+ K+
Sbjct: 209 QVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKE 268

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+++F  M+ S V PN ITFVS+L ACSH G+++EG   F+ M  +F V P ++HY CMV
Sbjct: 269 AMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYLCMV 328

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGRAG L     LI+ M+ + D  +WG+LLGACRIHKNV+L E++A+ L E    N G
Sbjct: 329 DLLGRAGYL-XCYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXSNCG 387

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
           +YVLLSN+YA+AGRW +V ++R LM  R L K PG++ +E++ +IH   VGD  HPQ E+
Sbjct: 388 YYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQHEK 447

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY  L   + KL+  GY+P+ N  LHDVDEE K   L  HSEKLA+AFG++ +  G+ I 
Sbjct: 448 IYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGSIIH 507

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLR+CGDC+  IK +  +  R I+VRD+ RFHHF+ G+CSC DYW
Sbjct: 508 IIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/488 (40%), Positives = 277/488 (56%), Gaps = 48/488 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I    LL  Y        A  +F+ M  RD ++W+ M+ G+ +        E FR  I
Sbjct: 363 NVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMI 422

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G + +S+TL  V+ AC     +  G+ IH                        C+ I 
Sbjct: 423 RSGPEPNSHTLAAVLSACASLAYLGYGKQIH------------------------CRAI- 457

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM-RQK 269
             R L +Q                     V +  A+I +YA+ GS+  AR +FD++  +K
Sbjct: 458 --RSLQEQ--------------------SVSVSNAIITVYARSGSVPLARRVFDQICWRK 495

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
             ++W++MI A   HG G++A+ LF  ML   V P+R+T++ +  AC+H G +++G R +
Sbjct: 496 ETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYY 555

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
             M ++  + P++ HY CMVDLL RAG L EA + I+ M V  D  +WG+LL ACR+ KN
Sbjct: 556 EQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKN 615

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIE 449
            DLAE+AA+ LL   P N G Y  L+NVY+  GRW D A+I  L   + +KK  G++W  
Sbjct: 616 ADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTH 675

Query: 450 VENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSH 509
           V++K+H F   D  HPQ + I +    + E+++ AG++PD N  LHDVD+E+K   L  H
Sbjct: 676 VQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRH 735

Query: 510 SEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGG 569
           SEKLAIAFGLI+TPE T +RIMKNLRVC DCH+ IK +S +  R IIVRDA RFHHF  G
Sbjct: 736 SEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDG 795

Query: 570 ACSCRDYW 577
            CSC+DYW
Sbjct: 796 YCSCKDYW 803



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 17/241 (7%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N    N LL +YA    L DA  +F  M ERD+VSW+VMV G ++   F +  +TF + +
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G+    + L  V+ +C   +   +GR +H  V+K GL     V  +++ MY KC   +
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAE 215

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR +F++M  R   +W  M                + +Y   G +D A  +F+ M +++
Sbjct: 216 TARAVFERMKVRSESSWNAM----------------VSLYTHQGRMDLALSMFENMEERS 259

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           ++SW+A+IA Y  +G    AL  F  ML+ S + P+  T  S+L AC++  +++ G ++ 
Sbjct: 260 IVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMH 319

Query: 330 S 330
           S
Sbjct: 320 S 320



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 178/414 (42%), Gaps = 82/414 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYA------------------------------LHK 106
           R+VH+ ++  G  + + VAN +LY+Y                                H+
Sbjct: 183 RKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQ 242

Query: 107 ALTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFV 164
              D A ++F  M+ER  VSW+ ++ G+++        + F R      M+ D +T+  V
Sbjct: 243 GRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSV 302

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           + AC + + + MG+ +H  +L++G+     +  AL+  YAK   ++ AR++ D+    D 
Sbjct: 303 LSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVAD- 361

Query: 225 VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                        L+VI  TA+++ Y K G    ARE+FD M  ++VI+W+AMI  Y  +
Sbjct: 362 -------------LNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQN 408

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG------------------- 325
           GQ  +A++LF  M+ S   PN  T  ++L AC+    +  G                   
Sbjct: 409 GQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVS 468

Query: 326 ------------LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SV 370
                       + L   ++D    R +   +T M+  L + G  ++A+ L E M    V
Sbjct: 469 NAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGV 528

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAG 422
           + D   +  +  AC     +D  +   + +L      P   HY  + ++ A AG
Sbjct: 529 KPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAG 582



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 24/233 (10%)

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV----IDDARQLFDQMP--TRDLVTWTVM 230
           GR IH   +K+GL +  ++C  L+  YA+  V      +AR+LFD +P   R+  TW   
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTW--- 100

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                         +++ MYAK G +  AR +F +M +++ +SW+ M+      G+   A
Sbjct: 101 -------------NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDA 147

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           +  F  M+   + P++    ++L +C+ T     G R   S      +   V     ++ 
Sbjct: 148 VKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIG-RKVHSFVIKLGLSSCVPVANSVLY 206

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           + G+ G  + A  + E M V + E  W A++        +DLA    +++ ER
Sbjct: 207 MYGKCGDAETARAVFERMKV-RSESSWNAMVSLYTHQGRMDLALSMFENMEER 258


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 318/570 (55%), Gaps = 62/570 (10%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWS 127
           C ++  IRQ+H+   + G  + + V N LL  Y+ +  L +A  +FNGM E  RD VSW+
Sbjct: 151 CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWN 210

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            M+  + +    +     +R+ +  G ++D +TL  V+      +D+  G   H   +K+
Sbjct: 211 SMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKT 270

Query: 188 GLDIDQFV----------CAA----------------------LVDMYAKCKVID-DARQ 214
           G + ++ V          C A                      ++  Y++ K +  +A +
Sbjct: 271 GFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALE 330

Query: 215 LFDQMPTR----DLVTWTVMIGANKFLLD--------------------VILGTAVIDMY 250
            F QM       D  ++   I A   L                      + +  A++ MY
Sbjct: 331 CFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMY 390

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           +KCG++  AR++F RM Q N ++ +++IA Y  HG G ++L+LF  ML++ + P  IT V
Sbjct: 391 SKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLV 450

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           S+L AC+HTG VEEG + F+ M D F + P+ +HY+CM+DLLGRAG+L EA +LI++M  
Sbjct: 451 SILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPF 510

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
                 W ALLGACR + N++LAE AA   L+ +P N   Y++L+++Y+ A +W++ A+I
Sbjct: 511 SPGSAAWAALLGACRKYGNMELAEKAANQFLQLEPTNAVPYIMLASMYSAARKWEEAARI 570

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R LM  R ++K PG +WIE+  ++H F   D++HP+ +EI+  L  +  K++ AGY+PD 
Sbjct: 571 RKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDV 630

Query: 491 NFEL---HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
            +      +  E+ K   L  HSEKLA+AFGL+ T  G  + ++KNLR+CGDCH+ IK +
Sbjct: 631 RWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFM 690

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           SAI RR I VRDA RFH FE G CSC DYW
Sbjct: 691 SAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 155/394 (39%), Gaps = 91/394 (23%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--- 120
           + S ++ +++   + +H   +     ++  ++N  + +Y+    LT AH  FN   E   
Sbjct: 15  LKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPNV 74

Query: 121 ----------------------------RDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
                                        D VS++ ++  ++   D ++    F E    
Sbjct: 75  FSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREM 134

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+ +D +T   VI AC +   ++  R +H +   SG D    V  +L+  Y+K  ++++A
Sbjct: 135 GLVMDGFTFSGVITACCNHVGLI--RQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEA 192

Query: 213 RQLFDQM--PTRDLVTWTVMIGA------------------------NKFLLDVIL---- 242
             +F+ M    RD V+W  MI A                        + F L  +L    
Sbjct: 193 EMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTTFS 252

Query: 243 --------------------------GTAVIDMYAKCGS-IDSAREIFDRMRQKNVISWS 275
                                     G+ +IDMYAKCG+ +  +R++F+ +   +++ W+
Sbjct: 253 CVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLVVWN 312

Query: 276 AMIAAYGYHGQ-GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
            MI+ Y  + +   +AL+ F  M  +   P+  +FV  + ACS+     +G +  +    
Sbjct: 313 TMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHALAMK 372

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
                  +     +V +  + G L +A KL + M
Sbjct: 373 SEIPSNQISVNNALVTMYSKCGNLQDARKLFQRM 406



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 24/228 (10%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++++C   KD++ G+ +H I LKS +    ++    + +Y+KC ++  A   F+Q    +
Sbjct: 14  ILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTHEPN 73

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           + ++  +I A                YAK   I  A  +FD++ Q +++S++ +I AY  
Sbjct: 74  VFSFNALIAA----------------YAKESLIHVAHHLFDQIPQPDLVSFNTLINAYAD 117

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYA-CSHTGLVEEGLRL-FSSMWDDFAVRPD 341
            G    AL LF  M    ++ +  TF  ++ A C+H GL+ +   L FSS +D +     
Sbjct: 118 RGDTLSALSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSY----- 172

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVE-KDEGLWGALLGACRIHK 388
           V     ++    + G L+EA  +   M  E +DE  W +++ A   HK
Sbjct: 173 VSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHK 220



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 84/180 (46%), Gaps = 12/180 (6%)

Query: 63  FISSLLSCRNIF---QIRQVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGM 118
           F+ ++ +C N+    Q +Q HA  +     +N I V N L+ +Y+    L DA  LF  M
Sbjct: 347 FVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRM 406

Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            + ++V+ + ++ G+++          F + +   +   S TL  ++ AC     +  G+
Sbjct: 407 PQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGK 466

Query: 179 ----LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA 233
               ++ DI    G++ +    + ++D+  +   + +A +L D MP +     W  ++GA
Sbjct: 467 KYFNMMKDIF---GIEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGA 523


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 268/467 (57%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+GM +RD V+W+ M+ G+            F E    G  +   TL   + AC  
Sbjct: 287 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 346

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+ +H      G+                                         
Sbjct: 347 LGALERGKWVHSCAHSRGMR---------------------------------------- 366

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                  L V LGTA+IDMY+KCG++ +A E+FD M ++NV +W++ ++    +G G+  
Sbjct: 367 -------LSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDC 419

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M S+ V PN +TFV +L  CS  GLV+EG   F SM  +  + P ++HY CMVD
Sbjct: 420 LALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVD 479

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L GRAGRLD+A+  I  M +E  EG+WGALL A RIHKNV+L + A   L+  + +N   
Sbjct: 480 LYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAA 539

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           +VLLSN+YA++  W+ V+ +R++M  + +KK+PG + IEV  K+H+F VG  THP+ +EI
Sbjct: 540 HVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEI 599

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
             ML  ++++L L GYI +T   L D++EE K   +  HSEKLAIAFGL+A PE   IRI
Sbjct: 600 EMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRI 659

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCH + K +S +  R I++RD NRFHHF+ GACSC+DYW
Sbjct: 660 VKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 29/243 (11%)

Query: 143 FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL--------IHDIVLKSGLDIDQF 194
           F  FR+     +  D+Y+  F++RA           L        +H   L+ G   D  
Sbjct: 182 FGAFRDLP---LAPDNYSFTFLVRAATALAAAAASALDAALIAGSVHASALRHGHAGDPH 238

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V +  V MYA    +  AR  F ++ + D+V  T M+GA                 A  G
Sbjct: 239 VQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGA----------------LATGG 282

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
             D+ARE+FD M Q++ ++W+AMIA Y + G+ ++AL LF  M  +      +T VS L 
Sbjct: 283 EADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALT 342

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC+  G +E G +   S      +R  V   T ++D+  + G +  A+++ +SM  E++ 
Sbjct: 343 ACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG-ERNV 400

Query: 375 GLW 377
             W
Sbjct: 401 YTW 403



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 13/232 (5%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            +S+L +C  +  + +   VH+   + G   ++ +   L+ +Y+   A+  A  +F+ M 
Sbjct: 337 LVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG 396

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+  +W+  V G +      +C   F+     G++ +  T   V+R C     +  GR 
Sbjct: 397 ERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRA 456

Query: 180 IHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTVMIGANKF 236
             D  +KS   ID ++     +VD+Y +   +DDA    + MP       W  ++ A++ 
Sbjct: 457 CFD-SMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRI 515

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIF------DRMRQKNVISWSAMIAAYG 282
             +V LG   +D      S + A  +       D    K V +   M+ A G
Sbjct: 516 HKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKG 567


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 309/530 (58%), Gaps = 21/530 (3%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           PD     SV P    S +L+       R +H  ++  G L +  V + ++ +Y     + 
Sbjct: 250 PDQVTVSSVLPSVGDSEMLNMG-----RLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC- 168
              +LFN  +  ++   +  + G S+        E F  F    M+L+  +   +I  C 
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCA 364

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
           ++ KDI    L  ++ + +G+  +     +++        +   R              T
Sbjct: 365 QNGKDIEALELFREMQV-AGVKPNHVTIPSMLPACGNIAALGHGRS-------------T 410

Query: 229 VMIGANKFLLD-VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                   LLD V +G+A+IDMYAKCG I+ ++ +F+ M  KN++ W++++  +  HG+ 
Sbjct: 411 HGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKA 470

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           K+ + +F  ++ +R+ P+ I+F SLL AC   GL +EG + F  M +++ ++P ++HY+C
Sbjct: 471 KEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSC 530

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           MV+LLGRAG+L EA  LI+ M  E D  +WGALL +CR+  NVDLAE+AA+ L   +P+N
Sbjct: 531 MVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPEN 590

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
           PG YVLLSN+YA  G W +V  IR+ M    LKK PG +WI+V+N+++    GD +HPQ 
Sbjct: 591 PGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQI 650

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           ++I   +  +S+++  +G+ P+ +F LHDV+E+ +   L+ HSEKLA+ FGL+ TP+GT 
Sbjct: 651 DQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTP 710

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++++KNLR+CGDCH+ IK +S+   R I +RD NRFHHF+ G CSC D+W
Sbjct: 711 LQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 134/285 (47%), Gaps = 21/285 (7%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q HA+I+  G   +  ++ KL+  Y+ +    DA  +   + +    S+S ++   +K  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            F      F      G+  DS+ LP + + C +     +G+ IH +   SGLD+D FV  
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           ++  MY +C  + DAR++FD+M  +D+VT + ++ A                YA+ G ++
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCA----------------YARKGCLE 199

Query: 258 SAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
               I   M     + N++SW+ +++ +   G  K+A+ +F  +      P+++T  S+L
Sbjct: 200 EVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVL 259

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
            +   + ++  G RL         +  D    + M+D+ G++G +
Sbjct: 260 PSVGDSEMLNMG-RLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/554 (36%), Positives = 315/554 (56%), Gaps = 55/554 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           V+  + +G   +++ V N  + ++     L DA  LF  M +RD V+W++++  + +  +
Sbjct: 228 VYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNEN 287

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F      F    + G++ +  T   ++        +  G++IH++V ++G D D  V  A
Sbjct: 288 FGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATA 347

Query: 199 LVDMYAKCKV--------ID-----------------------DARQLFDQM------PT 221
           L+ +Y +C+         +D                       +A QLF +M      PT
Sbjct: 348 LMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPT 407

Query: 222 RDLVTWTVMIGA-----------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
              +   +   A                 N+F +++++ TA+I+MY KCG +  A  +F+
Sbjct: 408 SATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFE 467

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           +M +++++ W++M+ AY  HG   + L LF  M    V  + ++FVS+L A SH+G V +
Sbjct: 468 KMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTD 527

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG-LWGALLGA 383
           G + F +M  DF++ P  + Y C+VDLLGRAGR+ EA+ ++  +S    +G LW  LLGA
Sbjct: 528 GYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGA 587

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CR H   D A+ AA+ +LER P + G YV+LSNVYA AG W  V ++R LM  R +KK P
Sbjct: 588 CRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEP 647

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G + IE+ N++H+F  GD +HP+   IY  L  L+ ++  AGYIPDT   LHDV++E K 
Sbjct: 648 GRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKE 707

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L+ HSE+LAIAFGLI+TP GT +R++KNLRVC DCH+  K++S +  R I+VRD +RF
Sbjct: 708 DMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRF 767

Query: 564 HHFEGGACSCRDYW 577
           H+F+ G CSC+DYW
Sbjct: 768 HNFKDGRCSCKDYW 781



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 155/376 (41%), Gaps = 59/376 (15%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D  FF++ L  C   +N+   R+VH  +   G   N +V   L+ +YA   ++ +A  +F
Sbjct: 3   DTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 62

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             ++ +D  +W+ M+G + +  D+      F +     +     T   ++ AC   + + 
Sbjct: 63  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 122

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G  IH  +L+ G + D FV  AL++MY KC  +  A   F ++  RD+V+WT MI A  
Sbjct: 123 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 182

Query: 234 ----------------------NKFLL------------------------------DVI 241
                                 NK  L                              DV 
Sbjct: 183 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVR 242

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  + ++M+   G +  AR +F+ M  ++V++W+ +I  Y  +    +A+ LF  +    
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG 302

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V  N ITFV +L   +    + +G ++   +  +     D    T ++ L GR     +A
Sbjct: 303 VKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQA 361

Query: 362 LKLIESMSVEKDEGLW 377
            K+   M   KD   W
Sbjct: 362 WKIFVDMG-SKDVITW 376



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/164 (18%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+ I+       ++V   L+ +Y     + +A ++F  M +RD + W+ M+G +++ 
Sbjct: 428 RQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQH 487

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-----RLIHDIVLKSGLDI 191
             +    + F +    G++ D+ +   V+ A      +  G      ++ D  +    ++
Sbjct: 488 GYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPEL 547

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPT--RDLVTWTVMIGA 233
             + C  +VD+  +   I +A  +  ++     D + W  ++GA
Sbjct: 548 --YGC--VVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGA 587


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 268/467 (57%), Gaps = 47/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+GM +RD V+W+ M+ G+            F E    G  +   TL   + AC  
Sbjct: 287 ARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQ 346

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+ +H      G+                                         
Sbjct: 347 LGALERGKWVHSCAHSRGMR---------------------------------------- 366

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                  L V LGTA+IDMY+KCG++ +A E+FD M ++NV +W++ ++    +G G+  
Sbjct: 367 -------LSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDC 419

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M S+ V PN +TFV +L  CS  GLV+EG   F SM  +  + P ++HY CMVD
Sbjct: 420 LALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVD 479

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L GRAGRLD+A+  I  M +E  EG+WGALL A RIHKNV+L + A   L+  + +N   
Sbjct: 480 LYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAA 539

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           +VLLSN+YA++  W+ V+ +R++M  + +KK+PG + IEV  K+H+F VG  THP+ +EI
Sbjct: 540 HVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEI 599

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
             ML  ++++L L GYI +T   L D++EE K   +  HSEKLAIAFGL+A PE   IRI
Sbjct: 600 EMMLAEMNQRLRLQGYIANTKEVLFDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRI 659

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCH + K +S +  R I++RD NRFHHF+ GACSC+DYW
Sbjct: 660 VKNLRVCEDCHDYTKMISKVFNREIVMRDRNRFHHFKDGACSCKDYW 706



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 18/198 (9%)

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           +H   L+ G   D  V +  V MYA    +  AR  F ++ + D+V  T M+GA      
Sbjct: 224 VHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGA------ 277

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                      A  G  D+ARE+FD M Q++ ++W+AMIA Y + G+ ++AL LF  M  
Sbjct: 278 ----------LATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRH 327

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           +      +T VS L AC+  G +E G +   S      +R  V   T ++D+  + G + 
Sbjct: 328 AGAAVGEVTLVSALTACAQLGALERG-KWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386

Query: 360 EALKLIESMSVEKDEGLW 377
            A+++ +SM  E++   W
Sbjct: 387 AAMEVFDSMG-ERNVYTW 403



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 99/232 (42%), Gaps = 13/232 (5%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            +S+L +C  +  + +   VH+   + G   ++ +   L+ +Y+   A+  A  +F+ M 
Sbjct: 337 LVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMG 396

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ER+  +W+  V G +      +C   F+     G++ +  T   V+R C     +  GR 
Sbjct: 397 ERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRA 456

Query: 180 IHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTRDLV-TWTVMIGANKF 236
             D  +KS   ID ++     +VD+Y +   +DDA    + MP       W  ++ A++ 
Sbjct: 457 CFD-SMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRI 515

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIF------DRMRQKNVISWSAMIAAYG 282
             +V LG   +D      S + A  +       D    K V +   M+ A G
Sbjct: 516 HKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKG 567


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 318/585 (54%), Gaps = 66/585 (11%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHAL 114
           D   F S+L +C  +  +   R++HA ++    L  N  VA+ L+ +YA H+ +  A  +
Sbjct: 272 DGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQV 331

Query: 115 FNGMKE--RDSVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDR 171
           F+ + +  +    W+ M+ G+++          F R     G      T+  V+ AC   
Sbjct: 332 FDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS 391

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVM 230
           +       +H  V+K G+  ++FV  AL+DMYA+    D AR++F  +   D+V+W T++
Sbjct: 392 EAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLI 451

Query: 231 IG-------ANKFLL--------------------------------------------- 238
            G       A+ F L                                             
Sbjct: 452 TGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRH 511

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               DV +G+A++DMYAKCG +  +R +FDR+ ++N I+W+ +I AYG HG G +A  LF
Sbjct: 512 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 571

Query: 295 PMMLSS-RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
             M +S    PN +TF++ L ACSH+G+V+ GL+LF +M  D  V P      C+VD+LG
Sbjct: 572 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 631

Query: 354 RAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           RAGRLDEA  ++ SM   E+    W  +LGACR+H+NV L E+A + LLE +P+   HYV
Sbjct: 632 RAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 691

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LL N+Y+ AG+W   A++R  M RR + K PG +WIEV+  IH+F  G+S HP SEE++ 
Sbjct: 692 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHA 751

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  L  ++   GY PDT+  LHD+D+  K   L  HSEKLAIAFGL+    G  IR+ K
Sbjct: 752 HMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 811

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH   K +S +  R I++RD  RFHHF  G CSC DYW
Sbjct: 812 NLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 167/424 (39%), Gaps = 99/424 (23%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKA 107
           P  Q   S  P   I S  + R+    R +HA  +  G L   +  VAN LL  YA    
Sbjct: 53  PQQQLDHSALPPA-IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGR 111

Query: 108 LTDAHALFNGMKE--RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
           L  A  +F  + +   D+VS++ ++        + +     R  +  G  L S+TL  V+
Sbjct: 112 LAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVL 171

Query: 166 RACRD----RKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLF-DQ 218
           RA          + +GR  H   LK+GL     +F   AL+ MYA+  ++ DA++LF   
Sbjct: 172 RAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGA 231

Query: 219 MPTR-DLVTW----TVMIGANKF---------------------------------LLDV 240
            P R D+VTW    +V++ +  F                                 LLDV
Sbjct: 232 TPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDV 291

Query: 241 ------------------ILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAA 280
                              + +A++DMYA    +  AR++FD +    K +  W+AMI  
Sbjct: 292 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 351

Query: 281 YGYHGQGKKALDLFPMM-LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           Y   G  ++AL LF  M   +  +P   T  S+L AC+ +              + FA +
Sbjct: 352 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS--------------EAFAGK 397

Query: 340 PDVKHY-------------TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
             V  Y               ++D+  R G+ D A ++  +M    D   W  L+  C +
Sbjct: 398 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVV 456

Query: 387 HKNV 390
             +V
Sbjct: 457 QGHV 460


>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
          Length = 646

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/510 (40%), Positives = 295/510 (57%), Gaps = 53/510 (10%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMK--ERDSVSWSVMVG 131
           + Q+HA     G   N  VAN L+ +YA       + A  +F  M    RD VSW+ ++ 
Sbjct: 182 VPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQVFEEMPRASRDLVSWNAVIS 241

Query: 132 GFSKVADFINCFETFREF---IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
             ++    +   E +R        G++ D+ TL  V+ +C            H    + G
Sbjct: 242 AHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSC-----------AHTGARRVG 290

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248
           LD++Q+V                          RD +          F  ++ L  A+I+
Sbjct: 291 LDVEQYV--------------------------RDTIP--------GFRDNLPLCNALIN 316

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
            +A+CGS+  A+E+FD M +++V+SW+A+I  YG HGQG  A+DLF  M+S    P+ + 
Sbjct: 317 FHARCGSLAQAQELFDEMPERSVVSWTALIIGYGMHGQGDIAVDLFETMVSEATAPDSVA 376

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            V LL ACSH G+ +EG + FS+M  D+ +RP ++HYTCMVDLLGRAGRLDEA +LI SM
Sbjct: 377 MVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGRLDEARELIASM 436

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +  D  +WGALLGAC+IHKNV++ E A + ++  +P N G+YVL++N+YA+AG+   VA
Sbjct: 437 PMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANIYADAGQLDGVA 496

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYI 487
           K+R  M RR L+K PG +++E + K+H F   D +HPQ+  IY ++V L   + E  G  
Sbjct: 497 KVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVELERMVKEKTGGD 556

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
                    V E   V  +  HSEKLA+AFGL+ T  G+ I ++KNLRVCGDCHSF+K +
Sbjct: 557 VVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTI 616

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S +T R  +VRDA+RFH FE GACSCRDYW
Sbjct: 617 SELTNRAFLVRDASRFHRFENGACSCRDYW 646


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/592 (34%), Positives = 316/592 (53%), Gaps = 85/592 (14%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           +N   ++ +H   +   T  +  VA +LL +Y     +  A  LF   +  +   ++ ++
Sbjct: 38  KNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLI 97

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            GF     + +    F + +R  +  D+Y +  +++AC  ++ +  G+ +H +VLKSGL 
Sbjct: 98  DGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLG 157

Query: 191 IDQFVCAALVDMYAKCKV-------------------------------IDDARQLFDQM 219
           +D+ +   LV++Y KC V                               +++A ++F++M
Sbjct: 158 LDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEM 217

Query: 220 PTRDLV-----------------------------------TWTVMIGANKFLLDVILG- 243
            TRD V                                   T+  ++ A   L  + LG 
Sbjct: 218 GTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGR 277

Query: 244 ------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                              A+I+MY++CG ID A+ +FD +R K+V ++++MI     HG
Sbjct: 278 WIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHG 337

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           +  +A++LF  ML  RV PN ITFV +L ACSH GLV+ G  +F SM     + P+V+HY
Sbjct: 338 KSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHY 397

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            CMVD+LGR GRL+EA   I  M VE D+ +  +LL AC+IHKN+ + E  AK L E   
Sbjct: 398 GCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYR 457

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            + G +++LSN YA+ GRW   A++R+ M +  + K PG + IEV N IH+F  GD  HP
Sbjct: 458 IDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHP 517

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
           + + IY+ L  L+   +  GY+P T   LHD+D+E K   L  HSE+LAI +GL++T   
Sbjct: 518 ERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERLAICYGLVSTEAY 577

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T +R+ KNLR+C DCH+ IK ++ ITRR I+VRD NRFHHFE G CSC+DYW
Sbjct: 578 TTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 137/340 (40%), Gaps = 88/340 (25%)

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
           ++RK+    + IH   +K+    D FV   L+ +Y K   ID A +LF      ++  +T
Sbjct: 35  KNRKNPKHVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYT 94

Query: 229 VMI--------------------------------------------GANKFLLDVILGT 244
            +I                                            G+ K +  ++L +
Sbjct: 95  SLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKS 154

Query: 245 A----------VIDMYAKCGSIDSAREIFDRMRQKNVIS--------------------- 273
                      ++++Y KCG ++ AR++FD M +++V++                     
Sbjct: 155 GLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVF 214

Query: 274 ----------WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
                     W+ +I     +G+  + L++F  M    V PN +TFV +L AC+  G +E
Sbjct: 215 NEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALE 274

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            G R   +      V  +      ++++  R G +DEA  L + + V KD   + +++G 
Sbjct: 275 LG-RWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRV-KDVSTYNSMIGG 332

Query: 384 CRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             +H K+++  E+ ++ L ER   N   +V + N  ++ G
Sbjct: 333 LALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGG 372


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/511 (37%), Positives = 293/511 (57%), Gaps = 59/511 (11%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SK 135
           +H  +V  G   +  V N L+ +Y+    +  A  +F  M++RD V+W+ ++ G+    +
Sbjct: 423 IHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSER 482

Query: 136 VADFINCFETFR--------EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
             D +      +           R  ++ +S TL  ++ +C     +  G+ IH   +K 
Sbjct: 483 HEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK- 541

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247
                                                         N    DV +G+A++
Sbjct: 542 ----------------------------------------------NNLATDVAVGSALV 555

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMYAKCG +  +R++FD++  +NVI+W+ ++ AYG HG  + A+D+  MM+   V PN +
Sbjct: 556 DMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEV 615

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+S+  ACSH+G+V EGL++F +M  D+ V P   HY C+VDLLGRAGR+ EA +LI  
Sbjct: 616 TFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINL 675

Query: 368 MSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           +    D+ G W +LLGACRIH N+++ E+AA++L++ +P    HYVLL+N+Y++AG W  
Sbjct: 676 IPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYK 735

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
             ++R  M  + ++K PG +WIE  +++H+F  GDS+HPQSE++   L TL E++   GY
Sbjct: 736 ATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGY 795

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           IPDT+  LH+V+E+ K   L  HSEKLAIAFG++ T  GT IR+ KNLRVC DCH   K 
Sbjct: 796 IPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKF 855

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S +  R II+RD  RFHHF+ G CSC DYW
Sbjct: 856 ISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 174/414 (42%), Gaps = 80/414 (19%)

Query: 52  CQFTRSVDPKFF--ISSLLSCRN------IFQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
           C     V+P  F  +S  L+C N      +   +QVHA  +  G L + I+ N L+ +Y 
Sbjct: 185 CMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFII-NTLVAMYG 243

Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
               L  +  L    + RD V+W+ ++    +   F+   E  RE +  G++ D +T+  
Sbjct: 244 KMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISS 303

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
           V+ AC   + +  G+ +H   LK+G LD + FV +ALVDMY  CK +    ++FD M  R
Sbjct: 304 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDR 363

Query: 223 DLVTWTVMI---GANKF-----------------LLDVILGTAVIDMYAKCGSIDSAREI 262
            +  W  MI     N++                 L +      V+    + G+      I
Sbjct: 364 KIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAI 423

Query: 263 --------FDRMR---------------------------QKNVISWSAMIAAYGYHGQG 287
                    DR R                            +++++W+ +I  Y +  + 
Sbjct: 424 HGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERH 483

Query: 288 KKALDLFPMML---------SSRV--LPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDD 335
           + AL +   M          +SRV   PN IT +++L +C+    + +G  + + ++ ++
Sbjct: 484 EDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 543

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
            A   DV   + +VD+  + G L  + K+ + + + ++   W  ++ A  +H N
Sbjct: 544 LAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIPI-RNVITWNVIVMAYGMHGN 594



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 71/369 (19%)

Query: 77  RQVHAQIVA-GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +Q+HA +   G  + ++ VAN L+ +Y         + +F+ + ER+ VSW+ ++     
Sbjct: 113 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 172

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRD---RKDIVMGRLIHDIVLKSGLDID 192
              +    E FR  +   ++  S+TL  V  AC +    + ++MG+ +H   L+ G +++
Sbjct: 173 FEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELN 231

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLDVIL 242
            F+   LV MY K   +  ++ L      RDLVTW  ++           A ++L +++L
Sbjct: 232 SFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVL 291

Query: 243 ---------------------------------------------GTAVIDMYAKCGSID 257
                                                        G+A++DMY  C  + 
Sbjct: 292 EGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 351

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYAC 316
           S   +FD M  + +  W+AMI  Y  +   ++AL LF  M  S+ +L N  T   ++ AC
Sbjct: 352 SGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPAC 411

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKH----YTCMVDLLGRAGRLDEALKLIESMSVEK 372
             +G   +   +       F V+  +         ++D+  R G++D A ++   M  ++
Sbjct: 412 VRSGAFSKKEAIHG-----FVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME-DR 465

Query: 373 DEGLWGALL 381
           D   W  ++
Sbjct: 466 DLVTWNTII 474



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/261 (21%), Positives = 115/261 (44%), Gaps = 51/261 (19%)

Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
           T+ + I  G++ D++  P +++A  D +D+ +G+ IH  V K G  +D            
Sbjct: 80  TYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDS----------- 128

Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
                                              V +   ++++Y KCG   +  ++FD
Sbjct: 129 -----------------------------------VTVANTLVNLYRKCGDFGAVYKVFD 153

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           R+ ++N +SW+++I++     + + AL+ F  ML   V P+  T VS+  ACS+  +  E
Sbjct: 154 RISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPM-PE 212

Query: 325 GLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           GL +   +      + ++  +    +V + G+ G+L  +  L+ S    +D   W  +L 
Sbjct: 213 GLLMGKQVHAYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGSFE-GRDLVTWNTVLS 271

Query: 383 A-CRIHKNVDLAEMAAKSLLE 402
           + C+  + ++  E   + +LE
Sbjct: 272 SLCQNEQFLEALEYLREMVLE 292



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 31/160 (19%), Positives = 75/160 (46%), Gaps = 3/160 (1%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++HA  +     T++ V + L+ +YA    L  +  +F+ +  R+ ++W+V+V  +   
Sbjct: 533 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMH 592

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFV 195
            +  +  +  R  +  G++ +  T   V  AC     +  G ++ +++    G++     
Sbjct: 593 GNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDH 652

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTR--DLVTWTVMIGA 233
            A +VD+  +   + +A QL + +P        W+ ++GA
Sbjct: 653 YACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGA 692


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 326/585 (55%), Gaps = 34/585 (5%)

Query: 13  ISAKLRFFSSSTTAAIALEPH-----GHEQNPMNP----RVPMQMGP--------DCQFT 55
           I+  LRF ++     +   PH      H  NP       R   + GP             
Sbjct: 46  ITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLN 105

Query: 56  RSVDP-KFFISSLLSC-RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
            +V P  F  S+L S  +N     Q+H      G + +L V N ++++Y     L  A  
Sbjct: 106 NNVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARK 165

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M  RD V+W+ ++  +++  D  +  E F       M   +  +    +    +K 
Sbjct: 166 VFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKA 225

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           +   R + +    +G+  D+      +   A+  V   A  + +       +  +   G+
Sbjct: 226 LQFFRKMRE----AGVVTDEITLVGAISACAQLGVSGYADWIRE-------IAESSRFGS 274

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                +V +G+A+IDMY+KCG+++ A  +F  M++ NV S+S+MI  +  HG+ + A+ L
Sbjct: 275 GS---NVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKL 331

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  ML + + PN +TFV L  ACSH G+VE+G +LF +M + + V P   HY CM DLLG
Sbjct: 332 FYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLG 391

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           RAG L++AL+L+++M +E + G+WGALLGA  IH N D+AE+A++SL E +P N G+Y+L
Sbjct: 392 RAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNYLL 451

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK-IHQFSVGDSTHPQSEEIYR 472
           LS  YA A +W DV+++R LM  ++L+K PG +W+E +N  IH+F  GD  HP+  EI +
Sbjct: 452 LSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEIKK 511

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  L ++L+  GY P  N   +D+D+E K   L SHSEKLA+A+GL++T  G+ I+IMK
Sbjct: 512 ALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGSTIKIMK 571

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLR+C DCH  +   S +T R IIVRD  RFHHF  GACSC ++W
Sbjct: 572 NLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 143/304 (47%), Gaps = 25/304 (8%)

Query: 70  CRNIFQIRQVHAQIVAGGT-LTNLIVANKLLYIYAL-HKAL-TDAHALFNGMKERDSVSW 126
           C  +   +Q+HA I       ++ ++ N L +I  L H  + T  H LF+ +   +   +
Sbjct: 21  CTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLY 80

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           S ++  +++   F +    +   +   +   S+T   +       K+  +G  +H     
Sbjct: 81  SALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLL---KNPSLGSQLHLHAFL 137

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246
            G   D +V   ++ MY K  V+D AR++FD+MP RD+VTWT +I A             
Sbjct: 138 FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVA------------- 184

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
              YA+ G +DSA E+F  +  K++++W++M+  Y  +   KKAL  F  M  + V+ + 
Sbjct: 185 ---YARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDE 241

Query: 307 ITFVSLLYACSHTGL--VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           IT V  + AC+  G+    + +R  +     F    +V   + ++D+  + G ++EA  +
Sbjct: 242 ITLVGAISACAQLGVSGYADWIREIAES-SRFGSGSNVFVGSALIDMYSKCGNVEEAYNV 300

Query: 365 IESM 368
            + M
Sbjct: 301 FKGM 304


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 319/576 (55%), Gaps = 59/576 (10%)

Query: 61  KFFISSLLSCRN----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F  SS+LS       +   +Q+H+ I   G   N+ V   L+ +YA    +  A  +F+
Sbjct: 245 QFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFD 304

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIV 175
            M ER+ VSW+ M+ GF     +      F++ +R    + +  ++  V+ AC +   + 
Sbjct: 305 QMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLN 364

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV---------- 225
            GR +H +V+K GL    +V  +L+DMY KC+  D+  +LF  +  RD+V          
Sbjct: 365 FGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFV 424

Query: 226 -------------------------TWTVMIGANKFLLDVILGTAV-------------- 246
                                    +++ ++ ++  L  +  GTA+              
Sbjct: 425 QNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMC 484

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                I MYAKCGS+  A ++F+ +   NVISW+AMI+AY  HG   + ++LF  MLS  
Sbjct: 485 ILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG 544

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+ +TFV +L ACSHTG VEEGL  F+SM     + P  +HY CMVDLLGRAG LDEA
Sbjct: 545 IEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEA 604

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            + IESM ++    +WGALLGACR + N+ +   AA+ L E +P NPG+YVLL+N+   +
Sbjct: 605 KRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRS 664

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GR ++  ++R LM    ++K PG +WI+V+N    F+  D +H  S+EIY+ML  L + +
Sbjct: 665 GRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLV 724

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY+ +T F  + ++E  +   L+ HSEKLA+AFGL+  P  + IRI KNLR CG CH
Sbjct: 725 KKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCH 784

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + +K  S I  R IIVRD NRFH F  G CSC DYW
Sbjct: 785 TVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/459 (20%), Positives = 182/459 (39%), Gaps = 93/459 (20%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-- 120
            +++ +  R++    Q+H QI+     +   + N L+ +YA    L  A  LF+      
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +  V+W+ ++   S     +     F +    G   + +T   ++ A      ++ G+ +
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--NKFLL 238
           H ++ K G D + FV  ALVDMYAKC  +  A ++FDQMP R+LV+W  MI    +  L 
Sbjct: 268 HSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLY 327

Query: 239 DVILG------------------TAVIDMYAKCGSIDSAREI------------------ 262
           D  +G                  ++V+   A  G ++  R++                  
Sbjct: 328 DRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNS 387

Query: 263 -----------------FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
                            F  +  ++V++W+ ++  +  + + ++A + F +M    +LP+
Sbjct: 388 LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPD 447

Query: 306 RITFVSLLYACSHTGLVEEGLRLF-------------------------SSMWDDFAVRP 340
             +F ++L++ +    + +G  +                           S+ D + V  
Sbjct: 448 EASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFE 507

Query: 341 -----DVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDL 392
                +V  +T M+      G  ++ ++L E M    +E     +  +L AC     V+ 
Sbjct: 508 GIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEE 567

Query: 393 AEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDVAK 429
                 S+ +    NPG  HY  + ++   AG W D AK
Sbjct: 568 GLAHFNSMKKIHDMNPGPEHYACMVDLLGRAG-WLDEAK 605


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/593 (33%), Positives = 327/593 (55%), Gaps = 60/593 (10%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101
           P  P+Q     +     + + ++S L  C+++ + ++VHA I+  G   +    + L+  
Sbjct: 16  PNSPLQ---SSELNAKFNEQGWLSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVAS 72

Query: 102 YALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159
            AL +  ++  A ++F  ++E  S  ++ M+ G     D       + E +  G++ D++
Sbjct: 73  CALSRWGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNF 132

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV----------CAAL---------- 199
           T PFV++AC     +  G  IH  V  +GL++D FV          C A+          
Sbjct: 133 TYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQM 192

Query: 200 -----------------VDMYAKCKVI-----DDARQLFDQMPTRDLVTWTVMIGA---- 233
                            V+M+ +C ++      + R   ++      ++    +G+    
Sbjct: 193 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLG 252

Query: 234 ---------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                    N   L+V++ T++IDMY KCGS++    +F  M  KN  S++ MIA    H
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G+G++AL +F  ML   + P+ + +V +L ACSH GLV+EG + F+ M  +  ++P ++H
Sbjct: 313 GRGREALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQH 372

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           Y CMVDL+GRAG L EA  LI+SM ++ ++ +W +LL AC++H N+++ E+AA ++ +  
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLN 432

Query: 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTH 464
             NPG Y++L+N+YA A +W +VA+IR  M  + L + PG++ +E    +++F   D + 
Sbjct: 433 KHNPGDYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQ 492

Query: 465 PQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPE 524
           PQ E IY M+  +  +L+  GY PD +  L DVDE+ K   L  HS+KLAIAF LI T E
Sbjct: 493 PQCETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSE 552

Query: 525 GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           G+ +RI +NLR+C DCH++ K +S I  R I VRD+NRFHHF+ G CSC+DYW
Sbjct: 553 GSPVRISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/542 (36%), Positives = 306/542 (56%), Gaps = 58/542 (10%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALF-NGMKERD--SVSWSVMVGGFSKVADFINCFET 145
           L N  +  KL+ ++++   + +A  +F +G ++ D     W  M  G+S+          
Sbjct: 105 LNNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKEALLL 164

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           + E +    QL ++     ++AC D  D+  GR +H  VLK+  D DQ V  AL+ +Y++
Sbjct: 165 YYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSE 224

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMI---------------------------------- 231
               ++A ++FD MP R+LV+W  +I                                  
Sbjct: 225 DGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTI 284

Query: 232 ----------GANKFLLDVILGT----------AVIDMYAKCGSIDSAREIFDRMRQKNV 271
                     G+ K +  VI+ +          +++DMYAKCG++D  R +F+ M+ K++
Sbjct: 285 LPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDL 344

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            SW+ +I  Y  +G+  +A++ F  M+ S   P+ ITF++LL  CSH GL ++G RLF  
Sbjct: 345 TSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEM 404

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M  D  + P V+HY C+VD+LGRAGR+ EAL+++++M  +    +WG+LL +CR+H NV 
Sbjct: 405 MKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVP 464

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE  AK L E +P N G+YV+LSN+YANAG W+ V  +R+ M +R + K  G +W++++
Sbjct: 465 LAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIK 524

Query: 452 NKIHQFSVGDSTH-PQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +KIH F  G S     S E  ++   L E +E  GY+PDT   LHDV EE++   +  HS
Sbjct: 525 SKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHS 584

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LA  F LI T  G  IRI KNLRVC DCHS++K +S +T RVI++RD NRFHHF+ G 
Sbjct: 585 ERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGV 644

Query: 571 CS 572
           CS
Sbjct: 645 CS 646



 Score = 45.1 bits (105), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 25/39 (64%)

Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
           LA  F LI T  G  IRI KNL VC DCHS++K VS  T
Sbjct: 700 LATMFALINTASGMPIRITKNLHVCVDCHSWVKIVSKNT 738


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/504 (37%), Positives = 304/504 (60%), Gaps = 22/504 (4%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF--- 133
           + VH  ++  G   +   +N L+ +YA    L  +  +F+GMK +DSVSW+ M+  +   
Sbjct: 242 KYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQN 301

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            K+ D +  FE  +         D  T   +I +C   +D  +G  +   +   G+  D 
Sbjct: 302 GKMGDSLKVFENMK-------ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDM 354

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
              A ++ +   C ++   RQ       +++      +G      DV +G  +I+MY+KC
Sbjct: 355 ---ATMLSILPVCSLLAAKRQ------GKEIHGCIFKLGLES---DVPVGNVLIEMYSKC 402

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           GS+ ++ ++F  M+ K+V++W+A+I+A G +G+GKKA+  F  M ++ ++P+ + FV+++
Sbjct: 403 GSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 462

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
           +ACSH+GLVEEGL  F  M  D+ + P ++HY C+VDLL R+  LD+A   I SM ++ D
Sbjct: 463 FACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPD 522

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WGALL ACR+  + ++AE  ++ ++E  P + G+YVL+SN+YA  G+W  V  IR  
Sbjct: 523 SSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKS 582

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           +  R LKK PG +W+E++NK++ F  G     Q EE+ ++L  L+  +   GYI +  F 
Sbjct: 583 IKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFV 642

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD+DE+ K   L  HSE+LAIAFGL+ T  GT +++MKNLRVC DCH+  K++S I +R
Sbjct: 643 LHDIDEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQR 702

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            ++VRDANRFH F+ GACSC DYW
Sbjct: 703 ELLVRDANRFHVFKDGACSCGDYW 726



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 190/451 (42%), Gaps = 105/451 (23%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
           +L S     Q+ ++H+ I+  G   ++I + KL+  YA  +  T + ++F      ++V 
Sbjct: 22  ALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVY 81

Query: 126 -WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            W+ ++   +    F      + E  R  +Q D+YT P VI AC    D  M + IHD V
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV 141

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------- 233
           L  G   D ++  AL+DMY +   +D AR++F++MP RD+V+W  +I             
Sbjct: 142 LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEAL 201

Query: 234 --------------NKFLLDVILGTAV--------------------------------- 246
                         N+F  D++  T++                                 
Sbjct: 202 EIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 261

Query: 247 --IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
             I+MYAKCG++ +++E+F  M+ K+ +SW++MI  Y  +G+   +L +F  M +  +  
Sbjct: 262 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDI-- 319

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDD----------------------------- 335
             IT+ +++ +C H+     GLR+ S M  +                             
Sbjct: 320 --ITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIH 377

Query: 336 -----FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
                  +  DV     ++++  + G L  + ++ + M   KD   W AL+ AC ++   
Sbjct: 378 GCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT-KDVVTWTALISACGMYGE- 435

Query: 391 DLAEMAAKSLLERQPQN--PGHYVLLSNVYA 419
              + A ++  E +     P H   ++ ++A
Sbjct: 436 --GKKAVRAFGEMEAAGIVPDHVAFVAIIFA 464


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 318/585 (54%), Gaps = 66/585 (11%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHAL 114
           D   F S+L +C  +  +   R++HA ++    L  N  VA+ L+ +YA H+ +  A  +
Sbjct: 270 DGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQV 329

Query: 115 FNGMKE--RDSVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDR 171
           F+ + +  +    W+ M+ G+++          F R     G      T+  V+ AC   
Sbjct: 330 FDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS 389

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVM 230
           +       +H  V+K G+  ++FV  AL+DMYA+    D AR++F  +   D+V+W T++
Sbjct: 390 EAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLI 449

Query: 231 IG-------ANKFLL--------------------------------------------- 238
            G       A+ F L                                             
Sbjct: 450 TGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRH 509

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               DV +G+A++DMYAKCG +  +R +FDR+ ++N I+W+ +I AYG HG G +A  LF
Sbjct: 510 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 569

Query: 295 PMMLSS-RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
             M +S    PN +TF++ L ACSH+G+V+ GL+LF +M  D  V P      C+VD+LG
Sbjct: 570 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 629

Query: 354 RAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           RAGRLDEA  ++ SM   E+    W  +LGACR+H+NV L E+A + LLE +P+   HYV
Sbjct: 630 RAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 689

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LL N+Y+ AG+W   A++R  M RR + K PG +WIEV+  IH+F  G+S HP SEE++ 
Sbjct: 690 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHA 749

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  L  ++   GY PDT+  LHD+D+  K   L  HSEKLAIAFGL+    G  IR+ K
Sbjct: 750 HMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 809

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH   K +S +  R I++RD  RFHHF  G CSC DYW
Sbjct: 810 NLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 167/424 (39%), Gaps = 99/424 (23%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKA 107
           P  Q   S  P   I S  + R+    R +HA  +  G L   +  VAN LL  YA    
Sbjct: 51  PQQQLDHSALPPA-IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGR 109

Query: 108 LTDAHALFNGMKE--RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
           L  A  +F  + +   D+VS++ ++        + +     R  +  G  L S+TL  V+
Sbjct: 110 LAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVL 169

Query: 166 RACRD----RKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLF-DQ 218
           RA          + +GR  H   LK+GL     +F   AL+ MYA+  ++ DA++LF   
Sbjct: 170 RAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGA 229

Query: 219 MPTR-DLVTW----TVMIGANKF---------------------------------LLDV 240
            P R D+VTW    +V++ +  F                                 LLDV
Sbjct: 230 TPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDV 289

Query: 241 ------------------ILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAA 280
                              + +A++DMYA    +  AR++FD +    K +  W+AMI  
Sbjct: 290 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 349

Query: 281 YGYHGQGKKALDLFPMM-LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           Y   G  ++AL LF  M   +  +P   T  S+L AC+ +              + FA +
Sbjct: 350 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS--------------EAFAGK 395

Query: 340 PDVKHY-------------TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
             V  Y               ++D+  R G+ D A ++  +M    D   W  L+  C +
Sbjct: 396 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVV 454

Query: 387 HKNV 390
             +V
Sbjct: 455 QGHV 458


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 311/590 (52%), Gaps = 89/590 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLY-IYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           +R+VHA+++  G L +L  A  LL   YA    L DA   F+    RD   +S ++   S
Sbjct: 20  VRRVHARLLKEG-LADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVS 78

Query: 135 KVADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
             +D        R  +    ++ D + L  +  A    + + +GR +H     S    D 
Sbjct: 79  HSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADN 138

Query: 194 FVCAALVDMYAKCKVIDDARQ-------------------------------LFDQMPTR 222
            V ++L+DMY KC V  DAR+                               LF  MP  
Sbjct: 139 VVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAH 198

Query: 223 DLVTW-------------------------------------TVMIGANK---------- 235
            L TW                                     TV+ GA            
Sbjct: 199 GLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQL 258

Query: 236 --------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                   FL  +I+G A++DMY+KC  I SARE+F+ +  ++VISW+ ++     HG+ 
Sbjct: 259 HGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRA 318

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           ++   L+  ML + + PN +TFV L+YACSH GLV++G +LF SM  ++ ++P V+HYTC
Sbjct: 319 EEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTC 378

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
            +DLL R+G L EA KLI +M  E DE  WGALL AC+ H +  +    A +LLE +P++
Sbjct: 379 YLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKD 438

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
           P  Y+LLSNVYA   +W  VAK+R +M    ++K+PG++W+E   +   F  G+      
Sbjct: 439 PSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVG 498

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           EEI   L  L  ++   GY+PDT+  +HD++E  K  +L+ HSE+LA+AFG++ +P G+ 
Sbjct: 499 EEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSV 558

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IR++KNLRVCGDCH+ +K +SAI +R IIVRDA+RFHHFE G CSC ++W
Sbjct: 559 IRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 308/563 (54%), Gaps = 57/563 (10%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++ +  Q+H Q++  G     +V + L+  Y+       +  LF+    + + +WS ++
Sbjct: 21  RSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVI 80

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             F++    +     FR  +R G+  D +TLP   ++      + +   +H + LK+   
Sbjct: 81  SSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHH 140

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------- 233
            D FV ++LVD YAKC  ++ AR++FD+MP +++V+W+ MI                   
Sbjct: 141 HDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRA 200

Query: 234 ---------NKFLLDVIL------------------------------GTAVIDMYAKCG 254
                    N F L  +L                               +++I +Y+KCG
Sbjct: 201 LEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCG 260

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            ++   ++F+ ++ +N+  W+AM+ A   H    +  +LF  M    V PN ITF+ LLY
Sbjct: 261 VVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLY 320

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           ACSH GLVE+G   F  M  +  + P  +HY  +VDLLGRAG+L+EA+ +I+ M ++  E
Sbjct: 321 ACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTE 379

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            +WGALL  CRIH N +LA   A  + E    + G  VLLSN YA AGRW++ A+ R +M
Sbjct: 380 SVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMM 439

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             + +KK  G +W+E  N++H F+ GD +H ++ EIY  L  L E++  AGY+ DT+F L
Sbjct: 440 RDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVL 499

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
            +VD + K   +  HSE+LAIAFGLI  P    IR+MKNLRVCGDCH+ IK +S  T RV
Sbjct: 500 KEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRV 559

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           IIVRD NRFH FE G C+C DYW
Sbjct: 560 IIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 94/207 (45%), Gaps = 5/207 (2%)

Query: 62  FFISSLL---SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F +SS+L   S   +F++ +QVH         ++  VA+ L+ +Y+    +   + +F  
Sbjct: 212 FTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEE 271

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           +K R+   W+ M+   ++ A     FE F E  R G++ +  T   ++ AC     +  G
Sbjct: 272 VKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKG 331

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGANKF 236
                ++ + G++      A LVD+  +   +++A  +  +MP +   + W  ++   + 
Sbjct: 332 EHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRI 391

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIF 263
             +  L + V D   + G++ S  ++ 
Sbjct: 392 HGNTELASFVADKVFEMGAVSSGIQVL 418



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 158/427 (37%), Gaps = 99/427 (23%)

Query: 164 VIRACRD----------RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           V+  CRD           + +  G  +H  V+K G +    VC  L++ Y+K  +   + 
Sbjct: 3   VLSDCRDICKVLVWFTHTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSL 62

Query: 214 QLFDQMPTRDLVTWTVMIGA---NKFLL-----------------DVILGTA---VIDMY 250
           +LFD  P +   TW+ +I +   N   L                 D  L TA   V  + 
Sbjct: 63  KLFDSFPHKSATTWSSVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALS 122

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           +   ++             +V   S+++  Y   G    A  +F  M    V    +++ 
Sbjct: 123 SLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNV----VSWS 178

Query: 311 SLLYACSHTGLVEEGLRLFS-SMWDDFAVRPD---------------------VKHYTC- 347
            ++Y  S  GL EE L LF  ++  D+ +R +                       H  C 
Sbjct: 179 GMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCF 238

Query: 348 -------------MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH----KNV 390
                        ++ L  + G ++   K+ E + V ++ G+W A+L AC  H    +  
Sbjct: 239 KTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKV-RNLGMWNAMLIACAQHAHTGRTF 297

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYA--NAGRWQDVAKIRDLMTRRRLKKIPG---- 444
           +L E      +ER    P     L  +YA  +AG  +       LM    ++  PG    
Sbjct: 298 ELFEE-----MERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGIE--PGSQHY 350

Query: 445 WTWIEVENKIHQFS-----VGDSTHPQSEEIYRMLVT---LSEKLELAGYIPDTNFELHD 496
            T +++  +  +       + +     +E ++  L+T   +    ELA ++ D  FE+  
Sbjct: 351 ATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGA 410

Query: 497 VDEEVKV 503
           V   ++V
Sbjct: 411 VSSGIQV 417


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/568 (37%), Positives = 304/568 (53%), Gaps = 69/568 (12%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV-SWSVMVGGFSKVA 137
           +H   V  G   + +VA+ L+ +Y+    + DA  +F+G      + +W+ MV G++   
Sbjct: 81  IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAG 140

Query: 138 DFINCFETFREFIR--CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI--DQ 193
              +    FRE  R     Q D +T   +++AC        G  +H  +  SG     + 
Sbjct: 141 HGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 200

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------------- 231
            +  ALVDMY KC+ +  A Q+F+++  ++++ WT ++                      
Sbjct: 201 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 260

Query: 232 GA--NKFLLDVILG------------------------------TAVIDMYAKCGSIDSA 259
           GA  +  +L  ++G                               +++DMY KCG  D A
Sbjct: 261 GARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEA 320

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             +F  MR  NV+SW+ M+   G HG G++A+ LF  M +  V P+ +T+++LL ACSH 
Sbjct: 321 ERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHA 380

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GLV+E  R FS +  D  VRP  +HY CMVDLLGRAG L EA  LI +M +E   G+W  
Sbjct: 381 GLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQT 440

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LL ACR+HK+V +   A   LL     NP +YV LSNV A AG W++  K+RD M RR L
Sbjct: 441 LLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGL 500

Query: 440 KKIPGWTWIEVENKIHQFSVG---DSTHPQSEEIYRMLVTLSEKL-ELAGY-IPDTNFEL 494
           KK  G +W+EV  ++H F  G   + THPQ+ +I R+L  +  ++ E  GY   D  F L
Sbjct: 501 KKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDARFAL 560

Query: 495 HDVDEEVKVGNLYSHSEKLAIAF-----GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
           HDVDEE +  +L +HSE+LA+       G+     G  IR+ KNLRVCGDCH F K +SA
Sbjct: 561 HDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSA 620

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + RR ++VRDANRFH FE G+CSC+DYW
Sbjct: 621 VVRRALVVRDANRFHRFEHGSCSCKDYW 648



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 115/260 (44%), Gaps = 52/260 (20%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDR 171
           +F GM++R+ VSW+ ++ GF +  D   C     E +R   +   + YTL   ++AC   
Sbjct: 14  VFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGE-MRTASEAAPNEYTLSASLKACCVV 72

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
            D   G  IH + +++G      V ++LV +Y+K   I DAR++FD              
Sbjct: 73  GDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFD-------------- 118

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
           GA        LG+ +                          +W+AM++ Y + G G+ AL
Sbjct: 119 GAG-------LGSGI-------------------------ATWNAMVSGYAHAGHGRDAL 146

Query: 292 DLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCM 348
            +F  M     +  P+  TF SLL ACS  G   EG ++ ++M    F+   +      +
Sbjct: 147 LVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGAL 206

Query: 349 VDLLGRAGRLDEALKLIESM 368
           VD+  +  RL  A+++ E +
Sbjct: 207 VDMYVKCRRLPVAMQVFERL 226



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 10/138 (7%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRI 307
           MY KCG +D A E+F  MR +NV+SW+A++  +  HG     L L   M  +S   PN  
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALK 363
           T  + L AC   G    G+ +         VR   + +    + +V +  + GR+ +A +
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHG-----LCVRAGYQEHDVVASSLVLVYSKGGRIGDARR 115

Query: 364 LIESMSVEKDEGLWGALL 381
           + +   +      W A++
Sbjct: 116 VFDGAGLGSGIATWNAMV 133


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 277/468 (59%), Gaps = 48/468 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A+ +F  M E+D V+W+ ++ GF+           ++     G++ D +T+  ++ AC +
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +V+GR  H                                             + V 
Sbjct: 120 LATLVLGRRAH--------------------------------------------VYMVK 135

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKK 289
           +G NK   ++    A++D+YAKCG+I  AR+IFD M  ++NV+SW+++I     +G GK+
Sbjct: 136 VGLNK---NLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKE 192

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           AL+ F  M    ++P+ ITFV +LYACSH G+V EG   F  M + + + P ++HY CMV
Sbjct: 193 ALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMV 252

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGRAG L EA   I+ M ++ +  +W  LLGAC IH ++ L   A   LL+ +P++ G
Sbjct: 253 DLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSG 312

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            YVLLSN+YA+  RW DV ++R  M    ++K PG++ +E+ N +H+F +GD THPQSE 
Sbjct: 313 DYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEA 372

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY+MLV ++ KL+LAGY+P T   L D++EE K   L+ HSEK+AIAF LI T  GT IR
Sbjct: 373 IYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIR 432

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLRVC DCH  IK +S +  R I+VRD +RFHHF  G+CSCRDYW
Sbjct: 433 IIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 323/603 (53%), Gaps = 59/603 (9%)

Query: 30  LEPHGHEQNPMNPRVPMQM-GPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGT 88
           +  H H+ +     + M + G D       D    ++  +S R   + ++VHA  +    
Sbjct: 1   MSTHSHDTHLREALIQMTLXGLDMNLQ---DYNTVLNECVSKRAFKEGQRVHAHTIKTHY 57

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           L  + +  +L+  Y    +L DA  + N M ER+ VSW+ M+  +S+            +
Sbjct: 58  LPCVYLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQ 117

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            +R G + + +T   +           +   IH +++K       +V ++L+DMYAK   
Sbjct: 118 ILRSGTESNEFTFATMPYFMYRFLGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGK 177

Query: 209 IDDARQLFDQMPTRDLVTWTVMI-GANKFLLD---------------------------- 239
           I +AR +F+ +P RD+V+ T +I G  +  LD                            
Sbjct: 178 IHEARGIFECLPERDVVSCTAIISGYAQLDLDEELELFLRLQREGMXSNYVTYTSVLTAL 237

Query: 240 ------------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                   VIL  ++IDMY+KCG++  AR IFD MR++ VISW+
Sbjct: 238 SGLAALDHGKQVHNHLLCSEVPSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWN 297

Query: 276 AMIAAYGYHGQGKKALDLFPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           AM+  Y  HG+ ++ L+LF +M   ++V P+ +T +++L  CSH G  ++G+ +F  M  
Sbjct: 298 AMLVGYSKHGERREVLELFNLMRDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTS 357

Query: 335 -DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
              +V+PD K Y C+VDLLGRAGR++EA + I+ +  E    + G LLGAC +H N+ + 
Sbjct: 358 GKISVQPDTKRYGCVVDLLGRAGRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIG 417

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E     LLE +P+N G+YV+LSN+YA+AGRW+DV  +R+LM ++ + K PG + IEV+  
Sbjct: 418 EFVGHRLLEFEPENAGNYVILSNLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQV 477

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +  F   D +HP+ EE+      L  + + AGY PD +  LHDVDEE K   L SHSEKL
Sbjct: 478 LQTFHPSDCSHPRREEVSAKXQELLVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKL 537

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           A++FGLIATPE   I ++KNLR+C DCH+F K++S I  R + +RD N FH   G  CSC
Sbjct: 538 ALSFGLIATPESVLICVIKNLRICVDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSC 597

Query: 574 RDY 576
            DY
Sbjct: 598 GDY 600


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 199/536 (37%), Positives = 299/536 (55%), Gaps = 55/536 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N++L ++     + DA  LF+ M ER+ VSW+ ++ G   V DF+  F  F         
Sbjct: 14  NRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSD 73

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC--------- 206
             S+T   +IRA    + I +GR +H   LK G+  D FV  AL+DMY+KC         
Sbjct: 74  AGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFV 133

Query: 207 --------------------------KVIDDARQLFDQMPTRDLVTWTVMIGA------- 233
                                     + +D   ++ D     D  T+++++         
Sbjct: 134 FEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASV 193

Query: 234 ------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                       + F  D++  TA++D Y+K G I+ AR +FD+M  KNVISW+A+I  Y
Sbjct: 194 EHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGY 253

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
           G HG+G +A++LF  M+  R+ PN ITF+++L ACSH+GL E G  +F SM  D  ++P 
Sbjct: 254 GNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNRIKPR 313

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
             HY CM++L+GR G LDEAL LI     +    +W ALL ACR+++N +L + AA+ L 
Sbjct: 314 AMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAAEKLY 373

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
             +P    +Y++L N+Y +AG  ++ A +   + R+ L+  P  +WIEV+ + H F  GD
Sbjct: 374 GMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIEVKRRPHVFLSGD 433

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
           + HPQ +EIY+ +  L  ++   GY+P+    L DVDE+ +   LY HSEKLAIAFGLI+
Sbjct: 434 NRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRLY-HSEKLAIAFGLIS 492

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           TP    ++I++  R+CGDCH  IK ++ +T R I++RDA RFHHF+ G CSC DYW
Sbjct: 493 TPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGHCSCEDYW 548



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/291 (26%), Positives = 133/291 (45%), Gaps = 59/291 (20%)

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------- 232
           ++ +G + DQ++   ++ M+ KC ++ DAR+LFD+MP R+LV+W  +I            
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 233 -------------ANKFLLDVIL------------------------------GTAVIDM 249
                        A  F   V++                                A+IDM
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCGSI+ AR +F+ M +K  + W+ +IA Y  HG  ++ALD++  M  S V  +  TF
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
             ++  C+    VE   +  +++        D+   T +VD   + GR+++A  + + M+
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRH-GFGSDIVANTALVDFYSKWGRIEDARHVFDKMA 239

Query: 370 VEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             K+   W AL+G    H +  +  E+  + + ER   NP H   L+ + A
Sbjct: 240 -SKNVISWNALIGGYGNHGRGSEAVELFEQMIQER--MNPNHITFLAVLSA 287


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 318/585 (54%), Gaps = 66/585 (11%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHAL 114
           D   F S+L +C  +  +   R++HA ++    L  N  VA+ L+ +YA H+ +  A  +
Sbjct: 270 DGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQV 329

Query: 115 FNGMKE--RDSVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDR 171
           F+ + +  +    W+ M+ G+++          F R     G      T+  V+ AC   
Sbjct: 330 FDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS 389

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVM 230
           +       +H  V+K G+  ++FV  AL+DMYA+    D AR++F  +   D+V+W T++
Sbjct: 390 EAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLI 449

Query: 231 IG-------ANKFLL--------------------------------------------- 238
            G       A+ F L                                             
Sbjct: 450 TGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRH 509

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               DV +G+A++DMYAKCG +  +R +FDR+ ++N I+W+ +I AYG HG G +A  LF
Sbjct: 510 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 569

Query: 295 PMMLSS-RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
             M +S    PN +TF++ L ACSH+G+V+ GL+LF +M  D  V P      C+VD+LG
Sbjct: 570 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 629

Query: 354 RAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           RAGRLDEA  ++ SM   E+    W  +LGACR+H+NV L E+A + LLE +P+   HYV
Sbjct: 630 RAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 689

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LL N+Y+ AG+W   A++R  M RR + K PG +WIEV+  IH+F  G+S HP SEE++ 
Sbjct: 690 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHA 749

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  L  ++   GY PDT+  LHD+D+  K   L  HSEKLAIAFGL+    G  IR+ K
Sbjct: 750 HMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 809

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH   K +S +  R I++RD  RFHHF  G CSC DYW
Sbjct: 810 NLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 167/424 (39%), Gaps = 99/424 (23%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKA 107
           P  Q   S  P   I S  + R+    R +HA  +  G L   +  VAN LL  YA    
Sbjct: 51  PQQQLDHSALPPA-IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGR 109

Query: 108 LTDAHALFNGMKE--RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
           L  A  +F  + +   D+VS++ ++        + +     R  +  G  L S+TL  V+
Sbjct: 110 LAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVL 169

Query: 166 RACRD----RKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLF-DQ 218
           RA          + +GR  H   LK+GL     +F   AL+ MYA+  ++ DA++LF   
Sbjct: 170 RAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGA 229

Query: 219 MPTR-DLVTW----TVMIGANKF---------------------------------LLDV 240
            P R D+VTW    +V++ +  F                                 LLDV
Sbjct: 230 TPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDV 289

Query: 241 ------------------ILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAA 280
                              + +A++DMYA    +  AR++FD +    K +  W+AMI  
Sbjct: 290 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 349

Query: 281 YGYHGQGKKALDLFPMM-LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
           Y   G  ++AL LF  M   +  +P   T  S+L AC+ +              + FA +
Sbjct: 350 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS--------------EAFAGK 395

Query: 340 PDVKHY-------------TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
             V  Y               ++D+  R G+ D A ++  +M    D   W  L+  C +
Sbjct: 396 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIF-AMVDLPDVVSWNTLITGCVV 454

Query: 387 HKNV 390
             +V
Sbjct: 455 QGHV 458


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/537 (36%), Positives = 303/537 (56%), Gaps = 55/537 (10%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N LL +Y+    L  A  +F  M  R  VS++ M+ G+++        + F E    G+ 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM------------- 202
            D YT+  V+  C   + +  G+ +H+ + ++ +  D FV  AL+DM             
Sbjct: 395 PDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELV 454

Query: 203 ------------------YAKCKVIDDARQLFDQM-------PTRDLVTWTV-------- 229
                             Y+K    ++A  LF+ +       P    V   +        
Sbjct: 455 FSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSA 514

Query: 230 ---------MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                     I  N +  D  +  +++DMYAKCG++  AR +FD +  K+++SW+ MIA 
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAG 574

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           YG HG GK+A+ LF  M  + + P+ I+FVSLLYACSH+GLV+EG R F+ M  +  + P
Sbjct: 575 YGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 634

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            V+HY C+VD+L R G L +A + IE+M +  D  +WGALL  CRIH +V LAE  A+ +
Sbjct: 635 TVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKV 694

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
            E +P+N G+YVL++N+YA A +W++V ++R  + +R L+K PG +WIE++ +++ F  G
Sbjct: 695 FELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAG 754

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           DS++P++E+I   L  +  ++   GY P T + L D +E  K   L  HSEKLA+A G+I
Sbjct: 755 DSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGII 814

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           ++  G  IR+ KNLRVCGDCH   K +S +TRR I++RD+NRFH F+ G CSCR +W
Sbjct: 815 SSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 176/383 (45%), Gaps = 59/383 (15%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +DP+   S L  C   +++   ++V   I   G + +  + +KL  +Y     L +A  +
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ +K   ++ W++++   +K  DF      F++ +  G+++DSYT   V ++    + +
Sbjct: 152 FDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H  +LKSG      V  +LV  Y K   +D AR++FD+M  RD+++W  +I   
Sbjct: 212 NGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 232 --------GANKFL------LDVILGTAV------------------------------- 246
                   G + F+      +++ L T V                               
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED 331

Query: 247 ------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                 +DMY+KCG +DSA+ +F  M  ++V+S+++MIA Y   G   +A+ LF  M   
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            + P+  T  ++L  C+   L++EG R+   + ++  +  D+     ++D+  + G + E
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN-DMGFDIFVSNALMDMYAKCGSMRE 450

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
           A  +   M V KD   W  ++G 
Sbjct: 451 AELVFSEMRV-KDIISWNTVIGG 472



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 79/176 (44%), Gaps = 6/176 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  I+  G  ++  VAN L+ +YA   AL  A  LF+ +  +D VSW+VM+ G+   
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMH 578

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV---LKSGLDIDQ 193
                    F +  + G++ D  +   ++ AC     +  G    +I+    K    ++ 
Sbjct: 579 GFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 638

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVID 248
           + C  +VDM A+   +  A +  + MP   D   W  ++   +   DV L   V +
Sbjct: 639 YAC--IVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAE 692



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 16/195 (8%)

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249
           DID     +++ + A  K + D +++ +             I  N F+LD  LG+ +  M
Sbjct: 91  DIDPRTLCSVLQLCADSKSLKDGKEVDN------------FIRGNGFVLDSNLGSKLALM 138

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y  CG +  A  +FD+++ +  + W+ ++      G    ++ LF  M+SS V  +  TF
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDD-FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
             +  + S    V  G +L   +    F  R  V +   +V    +  R+D A K+ + M
Sbjct: 199 SCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN--SLVAFYLKNHRVDSARKVFDEM 256

Query: 369 SVEKDEGLWGALLGA 383
           + E+D   W +++  
Sbjct: 257 T-ERDVISWNSIING 270


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/621 (34%), Positives = 321/621 (51%), Gaps = 87/621 (14%)

Query: 44  VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
            P+   P  Q +   +    +  L  C N+ ++RQ+H Q++  G + + I A+KLL   A
Sbjct: 2   APILCTPTSQLSSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61

Query: 104 LHKA--LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
              +  L  A  +F+ +   ++  W+ M+ G+S   +       +   +   +  ++YT 
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ--- 218
           PF+++AC         + IH  ++K G   + +   +L+++Y+K   I  AR LFDQ   
Sbjct: 122 PFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 219 ----------------------------MPTRDLVTWTVMI----GANK----------- 235
                                       MP R++++WT MI    GA K           
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 236 ---------------------------------------FLLDVILGTAVIDMYAKCGSI 256
                                                    +D ILG  +IDMYAKCG +
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           + A E+F +M +K V  W+AMI+ Y  HG+G++AL+ F  M ++ V PN++TF  +L AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLV E   LF SM      +P ++HY CMVDLLGRAG L EA +LIE+M V+ +  +
Sbjct: 362 SHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAI 421

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL AC IH N++L +   K L++  P + G Y+ L++++A AG W   A++R  M  
Sbjct: 422 WGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKE 481

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + + K+PG + I V    H+F  GD +HPQ +EI  ML  + E+L   GY P     L D
Sbjct: 482 QGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLD 541

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++++ K   ++ HSEKLA+ FGLI+T  G  IRI+KNLRVC DCH+ IK +S +  R I+
Sbjct: 542 LEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREIL 601

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RD  RFH F+ G C+C DYW
Sbjct: 602 MRDRTRFHLFKDGNCTCGDYW 622


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/543 (37%), Positives = 298/543 (54%), Gaps = 54/543 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + N+++ N ++      K + +A  +F  M +RDS++W+ MV G ++        + FR 
Sbjct: 212 VKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRR 271

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
               G+ +D YT   ++ AC        G+ IH   +++  D + FV +ALVDMY+KC+ 
Sbjct: 272 MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRS 331

Query: 209 IDDARQLFDQMPTRDLVTWTVMI------------------------GANKFLLD----- 239
           I  A  +F +M  +++++WT MI                          N F L      
Sbjct: 332 IRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISS 391

Query: 240 -------------------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                                    + + +A++ +Y KCGSI+ A  +FD M   + +S+
Sbjct: 392 CANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSY 451

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +A+++ Y   G+ K+ +DLF  ML   V PN +TF+ +L ACS +GLVE+G   F SM  
Sbjct: 452 TALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQ 511

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D  +     HYTCM+DL  R+GRL EA + I  M    D   W  LL ACR+  ++++ +
Sbjct: 512 DHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGK 571

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
            AA++LL+  PQNP  YVLL +++A+ G W +VA +R  M  R++KK PG +WI+ +N++
Sbjct: 572 WAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRV 631

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
           H FS  D +HP S  IY  L  L+ K+   GY PD +  LHDV +  KV  L +HSEKLA
Sbjct: 632 HIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLA 691

Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
           IAFGLI  PE   IR++KNLRVC DCH+  K +S IT R I+VRDA RFH F  G CSC 
Sbjct: 692 IAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCG 751

Query: 575 DYW 577
           D+W
Sbjct: 752 DFW 754



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 171/409 (41%), Gaps = 93/409 (22%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N LL   A  + L D   LF  M +RD+VS++ ++ GFS           +R  +
Sbjct: 75  NLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALL 134

Query: 151 RCGMQLDS-------YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
           R    +D         T+  ++ A     D  +GR +H  +++ G     F  + LVDMY
Sbjct: 135 REEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMY 194

Query: 204 AK-------------------------------CKVIDDARQLFDQMPTRDLVTWTVM-- 230
           AK                               CK++++AR +F+ M  RD +TWT M  
Sbjct: 195 AKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVT 254

Query: 231 ----------------------IGANKFLLDVIL-------------------------- 242
                                 +G +++    IL                          
Sbjct: 255 GLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDG 314

Query: 243 ----GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
               G+A++DMY+KC SI  A  +F RM  KN+ISW+AMI  YG +G G++A+ +F  M 
Sbjct: 315 NIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQ 374

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
           +  + PN  T  S++ +C++   +EEG + F  M     +RP +   + +V L G+ G +
Sbjct: 375 TDGIKPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSI 433

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
           ++A +L + M           + G  +  K  +  ++  K LL+    N
Sbjct: 434 EDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPN 482



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 91/198 (45%), Gaps = 11/198 (5%)

Query: 55  TRSVDPKFFI--SSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           T  + P  F   S + SC N+  +    Q H   +  G    + V++ L+ +Y    ++ 
Sbjct: 375 TDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIE 434

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
           DAH LF+ M   D VS++ +V G+++        + F + +  G++ +  T   V+ AC 
Sbjct: 435 DAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACS 494

Query: 170 DRKDIVMG-RLIHDIVLKSGLDI--DQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLV 225
               +  G    H +    G+ +  D + C  ++D+Y++   + +A +   QMP   D +
Sbjct: 495 RSGLVEKGCSYFHSMQQDHGIVLLDDHYTC--MIDLYSRSGRLKEAEEFIRQMPRCPDAI 552

Query: 226 TWTVMIGANKFLLDVILG 243
            W  ++ A +   D+ +G
Sbjct: 553 GWATLLSACRLRGDMEIG 570



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 42/228 (18%)

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------NKFLLD 239
           D + F   AL+   A  +++ D  +LF  MP RD V++  +I                  
Sbjct: 73  DPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRA 132

Query: 240 VILGTAVID-------MYAKCGSIDSAREIFDRMRQKNV-------------ISWSAMIA 279
           ++   AV+D            G + +A  + DR   + V              +WS ++ 
Sbjct: 133 LLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVD 192

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y   G    A  +F  M    V+ N + + +++       +VEE   +F +M D     
Sbjct: 193 MYAKMGLIGDAKRVFDEM----VVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDR---- 244

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK---DEGLWGALLGAC 384
            D   +T MV  L + G   EAL +   M  E    D+  +G++L AC
Sbjct: 245 -DSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTAC 291



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 54/225 (24%)

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
           +V   L+  YA+   +  AR+LFD MP  +L T   ++ A                 A  
Sbjct: 46  YVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSA----------------LAHA 89

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-------SSRVLPNR 306
             +     +F  M Q++ +S++A+IA +   G   +A   +  +L        +RV P+R
Sbjct: 90  RLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSR 149

Query: 307 ITFVSLLYACS-----------HTGLVEEGLRLFSSMWD-------------------DF 336
           IT   ++ A S           H  ++  G   ++  W                    D 
Sbjct: 150 ITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDE 209

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            V  +V  Y  M+  L R   ++EA  + E+M V++D   W  ++
Sbjct: 210 MVVKNVVMYNTMITGLLRCKMVEEARGVFEAM-VDRDSITWTTMV 253


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 318/604 (52%), Gaps = 90/604 (14%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKER 121
           IS L SC  + +++Q+HAQ+V  G L N     + +   ALH    L  A+ L N     
Sbjct: 13  ISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYANKLLNHNNNP 72

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCG---MQLDSYTLPFVIRACRDRKDIVMGR 178
              + + M+  +SK +     F  +   +      +  D+YT  F++R C   +  V G 
Sbjct: 73  TLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGL 132

Query: 179 LIHDIVLKSGLDIDQFV----------------C---------------AALVDMYAKCK 207
            +H  V+K G ++D  V                C                A+++  AKC 
Sbjct: 133 CVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCG 192

Query: 208 VIDDARQLF------DQMPTRDLVTWTVMIGANKFLLDVI-------------------- 241
            ID AR++F      D +    ++      G ++  LDV                     
Sbjct: 193 DIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLS 252

Query: 242 ----------------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                       LGTA++DMYAKCG++D A ++F  M+++NV +
Sbjct: 253 ACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYT 312

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           WS+ I     +G G+++LDLF  M    V PN ITF+S+L  CS  GLVEEG + F SM 
Sbjct: 313 WSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMR 372

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           + + + P ++HY  MVD+ GRAGRL EAL  I SM +    G W ALL ACR++KN +L 
Sbjct: 373 NVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELG 432

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E+A + ++E + +N G YVLLSN+YA+   W+ V+ +R  M  + +KK+PG + IEV+ +
Sbjct: 433 EIAQRKIVELEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGE 492

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           +H+F VGD +HP+ +EI   L  +S+ L L+GY+ +TN  L D++EE K   L  HSEK+
Sbjct: 493 VHEFIVGDKSHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKV 552

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           AIAFGLI+      IR++ NLR+C DCH+  K +S I  R IIVRD NRFHHF+ G CSC
Sbjct: 553 AIAFGLISLKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSC 612

Query: 574 RDYW 577
           +DYW
Sbjct: 613 KDYW 616


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 287/534 (53%), Gaps = 82/534 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  ++  G +++  V++ L+ +Y      ++   +F+ M   D  S +  + G S+   
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331

Query: 139 FINCFETFREFIRCGMQL-----------------------------------DSYTLPF 163
             +    FR+    GM+L                                   +S T+P 
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPC 391

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           ++ AC +   ++ G+  H   L+ G+  D +V +AL+DMYAKC  I  +R  FD +PT++
Sbjct: 392 LLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN 451

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           LV W                 AVI  YA  G    A EIFD M++               
Sbjct: 452 LVCW----------------NAVIAGYAMHGKAKEAMEIFDLMQRS-------------- 481

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
              G+K              P+ I+F  +L ACS +GL EEG   F+SM   + +   V+
Sbjct: 482 ---GQK--------------PDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVE 524

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           HY CMV LL RAG+L++A  +I  M V  D  +WGALL +CR+H NV L E+AA+ L E 
Sbjct: 525 HYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFEL 584

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
           +P NPG+Y+LLSN+YA+ G W +V ++RD+M  + L+K PG +WIEV+NK+H    GD +
Sbjct: 585 EPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKS 644

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HPQ  +I   L  LS +++  GY P+ NF L DV+E+ K   L  HSEKLA+ FGL+ TP
Sbjct: 645 HPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTP 704

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            G  ++++KNLR+CGDCH  IK +S+  RR I VRD NRFHHF+ GACSC DYW
Sbjct: 705 PGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 158/350 (45%), Gaps = 59/350 (16%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q RQ HA I+  G   +  +A KLL  YA +    DA  + + + E +  S+S ++  FS
Sbjct: 31  QTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFS 90

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           K   F +   TF + +  G+  D+  LP  ++AC     +   R +H I   SG D D F
Sbjct: 91  KFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSF 150

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V ++LV MY KC  I DA ++FD+M   D+V+W+ ++ A                YA+ G
Sbjct: 151 VQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA----------------YARQG 194

Query: 255 SIDSAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            +D A+ +F  M     Q N+ISW+ MIA + + G   +A+ +F  M      P+  T  
Sbjct: 195 CVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTIS 254

Query: 311 SLLYACS-----------HTGLVEEGL---RLFSSMWDDFAVRP---------------- 340
           S+L A             H  ++++GL   +  SS   D   +                 
Sbjct: 255 SVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHM 314

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL------WGALLGAC 384
           DV      +  L R G+++ +L+L   +   KD+G+      W +++  C
Sbjct: 315 DVGSCNAFIFGLSRNGQVESSLRLFRQL---KDQGMELNVVSWTSMIACC 361



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 172/392 (43%), Gaps = 61/392 (15%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D +   S++ +C  +  +   RQVH      G  ++  V + L+++Y     + DAH +F
Sbjct: 113 DNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVF 172

Query: 116 NGMKERDSVSWSV-----------------------------------MVGGFSKVADFI 140
           + M E D VSWS                                    M+ GF+    + 
Sbjct: 173 DRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYS 232

Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
                F +    G + D  T+  V+ A  D +D+VMG LIH  V+K GL  D+ V +AL+
Sbjct: 233 EAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALI 292

Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
           DMY KC    +  Q+FDQM   D+ +       N F+  +          ++ G ++S+ 
Sbjct: 293 DMYGKCSCTSEMSQVFDQMDHMDVGS------CNAFIFGL----------SRNGQVESSL 336

Query: 261 EIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
            +F +++ +    NV+SW++MIA    +G+  +AL+LF  M  + V PN +T   LL AC
Sbjct: 337 RLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPAC 396

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
            +   +  G +          +  DV   + ++D+  + GR+  +    + +   K+   
Sbjct: 397 GNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPT-KNLVC 454

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           W A++    +H     A M    L++R  Q P
Sbjct: 455 WNAVIAGYAMHGKAKEA-MEIFDLMQRSGQKP 485



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/184 (20%), Positives = 80/184 (43%), Gaps = 9/184 (4%)

Query: 67  LLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C NI  +   +  H   +  G  T++ V + L+ +YA    +  +   F+G+  ++ 
Sbjct: 393 LPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNL 452

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR-LIHD 182
           V W+ ++ G++         E F    R G + D  +   V+ AC        G    + 
Sbjct: 453 VCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNS 512

Query: 183 IVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLD 239
           +  K G++  ++ + C  +V + ++   ++ A  +  +MP   D   W  ++ + +   +
Sbjct: 513 MSSKYGIEARVEHYAC--MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNN 570

Query: 240 VILG 243
           V LG
Sbjct: 571 VSLG 574


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 321/607 (52%), Gaps = 91/607 (14%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           F ++S     ++    +VH+ I+  G  ++L V N L+++Y++   L  A  LF+    R
Sbjct: 116 FLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVR 175

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           D VS++ M+ G+++V    +    F E    G+  D +T   +   C    +  +G+ IH
Sbjct: 176 DLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIH 235

Query: 182 DIVLKSGLDIDQFVC--AALVDMYAK--------------------------------CK 207
             V K+   ID  +   +A+VDMYAK                                C 
Sbjct: 236 AQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCG 295

Query: 208 VIDDARQLFDQMPTR-----------------------------------DLVTWTVMIG 232
            I+ AR+LF+ M  R                                   D VT   ++ 
Sbjct: 296 EINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLS 355

Query: 233 A--------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN 270
           A                      F  + IL  AV+DMYAKCGSIDSA EIF R+ +  K 
Sbjct: 356 ACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKT 415

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
              +++MIA    HG G+ A+ +F  ++S+ + P+ +TFV +L AC H+GL+EEG +LF 
Sbjct: 416 GFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFE 475

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM++ + ++P ++HY CMVDLLGR G L+EA  L++ M  E +  +W ALL ACR H NV
Sbjct: 476 SMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNV 535

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
            + E+A + LLE + Q+   YVLLSN+ A+A +W++  ++R +M    ++K PGW++IE+
Sbjct: 536 KIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIEL 595

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
              IH+F   D +HPQ +EI  ML  ++ +L+ AGY+P+T   + D+DEE K   +  HS
Sbjct: 596 GGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHS 655

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLA+AFGL+       IRI+KNLR+C DCH   K VS I  R I VRD  RFHHF  G+
Sbjct: 656 EKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGS 715

Query: 571 CSCRDYW 577
           CSC D+W
Sbjct: 716 CSCMDFW 722



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 136/320 (42%), Gaps = 52/320 (16%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL---HKALTDAHALFNGMKERDS 123
           L SC++  Q  Q+HAQ +  G    +   ++L+  ++L      L  +  LF+ +   + 
Sbjct: 16  LESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNL 75

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHD 182
             W+ M+ G+S+  +       +   I  G+   +++T PF++ +C     +  G  +H 
Sbjct: 76  FMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHS 135

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
            ++K G + D FV  AL+ +Y+    ++ AR LFD+   RDLV++  M            
Sbjct: 136 HIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTM------------ 183

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
                                              I  Y    Q + AL LF  M +S +
Sbjct: 184 -----------------------------------IKGYAEVNQPESALCLFGEMQNSGI 208

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRPDVKHYTCMVDLLGRAGRLDEA 361
           LP+  TFV+L   CS       G ++ + ++ +  ++  ++   + +VD+  + G ++ A
Sbjct: 209 LPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIA 268

Query: 362 LKLIESMSVEKDEGLWGALL 381
            ++  +M   K    W +++
Sbjct: 269 ERVFSTMGTSKSAAAWSSMV 288


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/525 (37%), Positives = 303/525 (57%), Gaps = 47/525 (8%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  +V  G  +N+   N L+ +Y+L   +  A  +F+   + D V+W+ M+ G++++
Sbjct: 134 RELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRI 193

Query: 137 A-DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D I+       F+  G Q+D+                   +  H +  +     D   
Sbjct: 194 KKDVISWTAIVTGFVNTG-QVDAAR-----------------KYFHKMPER-----DHVS 230

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDL----------VTWTVMIGA------------ 233
             A++D Y +     +A  LF +M T  +          +T    +GA            
Sbjct: 231 WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYID 290

Query: 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
            NK   D  +G A+IDMY KCG+++ A  IF+ + Q++  +W+AM+     +G G++AL+
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           +F  ML + V P+ +T+V +L AC+HTG+V+EG + F+SM     + P++ HY CMVDLL
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLL 410

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           G+AG L EA ++I++M ++ +  +WGALLGACRIHK+ ++AE A + +LE +P N   YV
Sbjct: 411 GKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYV 470

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           L  N+YA   +W  + ++R +M  R +KK PG + IE+   +H+F  GD +HPQ++EIY 
Sbjct: 471 LQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYG 530

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            L  ++  L++AGY P+T+    D+ EE K   +Y HSEKLAIAFGLI +  G  IRI+K
Sbjct: 531 KLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVK 590

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLR+C DCH   K VS +  R +IVRD  RFHHF  G+CSC+DYW
Sbjct: 591 NLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 180/334 (53%), Gaps = 7/334 (2%)

Query: 52  CQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD- 110
           C  +  V     +S   +C++++ ++Q+H++ +  G + N I+ NK+L  +   +   D 
Sbjct: 6   CSQSSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILS-FCCSREFGDM 64

Query: 111 --AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
             A  LF+ + E    SW++M  G+S++A        + E +   ++ D YT PF+ +  
Sbjct: 65  CYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGF 124

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
                + +GR +H  V+K GLD + F   AL++MY+ C +ID AR +FD     D+VTW 
Sbjct: 125 TRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWN 184

Query: 229 VMI-GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
            MI G N+   DVI  TA++  +   G +D+AR+ F +M +++ +SW+AMI  Y      
Sbjct: 185 AMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCY 244

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           K+AL LF  M +S++ P+  T VS+L AC+  G +E G     +  D   V+ D      
Sbjct: 245 KEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELG-EWIRTYIDKNKVKNDTFVGNA 303

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++D+  + G ++ AL +  ++  ++D+  W A++
Sbjct: 304 LIDMYFKCGNVEMALSIFNTLP-QRDKFTWTAMV 336



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/242 (19%), Positives = 93/242 (38%), Gaps = 25/242 (10%)

Query: 55  TRSVDPKFF--ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           T  + P  F  +S L +C  +  +     +   I       +  V N L+ +Y     + 
Sbjct: 256 TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVE 315

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A ++FN + +RD  +W+ MV G +           F + ++  +  D  T   V+ AC 
Sbjct: 316 MALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACT 375

Query: 170 DRKDIVMG-RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTW 227
               +  G +    +  + G++ +      +VD+  K   + +A ++   MP + + + W
Sbjct: 376 HTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVW 435

Query: 228 TVMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQK 269
             ++GA +   D  +    I+                  +YA C   D  RE+   M  +
Sbjct: 436 GALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDR 495

Query: 270 NV 271
            +
Sbjct: 496 GI 497


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 267/467 (57%), Gaps = 48/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  LF+GM +RD V+WS M+ G+  V         F E +  G  +   TL  V+ AC  
Sbjct: 199 ARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQ 258

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G+ +H  V   G+                                         
Sbjct: 259 IGTLDRGKWVHWYVRSRGMQ---------------------------------------- 278

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                  + + LGTA++DMY+KCG++ +A E+F+ M ++NV +W++ ++    +G G + 
Sbjct: 279 -------MSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTEC 331

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L LF  M  + + PN ++FV++L  CS  GLV+EG   F SM D + V P  +HY CMVD
Sbjct: 332 LQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVD 390

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L GRAGRLD+A+  I  M +E  EG+WGALL A RIH +VDL + A   LL  + +N   
Sbjct: 391 LYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAA 450

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           +V LSN+YA +  W+ V+++R +M  + +KK+PGW+ IEV+ K+H+F VG   HP+  EI
Sbjct: 451 HVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEI 510

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
             ML  +  +L L GY  +T   L D++EE K G +  HSEKLA+AFGLI  PE   IRI
Sbjct: 511 ELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRI 570

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +KNLRVC DCH +IK VS +  R I++RD NRFHHF+GG CSCRDYW
Sbjct: 571 VKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/576 (37%), Positives = 319/576 (55%), Gaps = 59/576 (10%)

Query: 61  KFFISSLLSCRN----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           +F  SS+LS       +   +Q+H+ I   G   N+ V   L+ +YA    +  A  +F+
Sbjct: 10  QFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFD 69

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIV 175
            M ER+ VSW+ M+ GF     +      F++ +R    + +  ++  V+ AC +   + 
Sbjct: 70  QMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLN 129

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV---------- 225
            GR +H +V+K GL    +V  +L+DMY KC+  D+  +LF  +  RD+V          
Sbjct: 130 FGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFV 189

Query: 226 -------------------------TWTVMIGANKFLLDVILGTAV-------------- 246
                                    +++ ++ ++  L  +  GTA+              
Sbjct: 190 QNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMC 249

Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                I MYAKCGS+  A ++F+ +   NVISW+AMI+AY  HG   + ++LF  MLS  
Sbjct: 250 ILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG 309

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+ +TFV +L ACSHTG VEEGL  F+SM     + P  +HY CMVDLLGRAG LDEA
Sbjct: 310 IEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEA 369

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            + IESM ++    +WGALLGACR + N+ +   AA+ L E +P NPG+YVLL+N+   +
Sbjct: 370 KRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRS 429

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GR ++  ++R LM    ++K PG +WI+V+N    F+  D +H  S+EIY+ML  L + +
Sbjct: 430 GRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLV 489

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY+ +T F  + ++E  +   L+ HSEKLA+AFGL+  P  + IRI KNLR CG CH
Sbjct: 490 KKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCH 549

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + +K  S I  R IIVRD NRFH F  G CSC DYW
Sbjct: 550 TVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 148/371 (39%), Gaps = 92/371 (24%)

Query: 150 IRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
           +RC G   + +T   ++ A      ++ G+ +H ++ K G D + FV  ALVDMYAKC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGA--NKFLLDVILG------------------TAVID 248
           +  A ++FDQMP R+LV+W  MI    +  L D  +G                  ++V+ 
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 249 MYAKCGSIDSAREI-----------------------------------FDRMRQKNVIS 273
             A  G ++  R++                                   F  +  ++V++
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF---- 329
           W+ ++  +  + + ++A + F +M    +LP+  +F ++L++ +    + +G  +     
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 330 ---------------------SSMWDDFAVRP-----DVKHYTCMVDLLGRAGRLDEALK 363
                                 S+ D + V       +V  +T M+      G  ++ ++
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 364 LIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVY 418
           L E M    +E     +  +L AC     V+       S+ +    NPG  HY  + ++ 
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLL 360

Query: 419 ANAGRWQDVAK 429
             AG W D AK
Sbjct: 361 GRAG-WLDEAK 370


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/505 (40%), Positives = 293/505 (58%), Gaps = 22/505 (4%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R + + I   G   +LI+ N +L +Y     + DA  LFN M E+D VSW+ M+ G +K+
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL 353

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ--F 194
            ++      F        +  +     +    ++ K  V   L H++ L      D+   
Sbjct: 354 GNYDEAHCIFDAMPH---KWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAVIDMYAKC 253
           +CA                    Q+   D   W  V I  +   L+  L T+++DMYAKC
Sbjct: 411 ICALCASA---------------QLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKC 455

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G+++ A E+F  + +K+V  WSAMI A   +GQGK ALDLF  ML + + PN +TF ++L
Sbjct: 456 GNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNIL 515

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            AC+H GLV EG +LF  M   + + P ++HY C+VD+ GRAG L++A   IE M +   
Sbjct: 516 CACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPT 575

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             +WGALLGAC  H NV+LAE+A ++LLE +P N G +VLLSN+YA AG W+ V+ +R L
Sbjct: 576 AAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKL 635

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M    +KK P  + I+V   +H+F VGD++HP S++IY  L  +SEK +  GY PD +  
Sbjct: 636 MRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNL 695

Query: 494 LHDVDEE-VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
           L   +E+ +   +L  HSEKLAIAFGLI+T     IRI+KN+R+CGDCH+F K VS +  
Sbjct: 696 LQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYD 755

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I++RD  RFHHF GG CSC DYW
Sbjct: 756 RDILLRDRYRFHHFRGGKCSCLDYW 780



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 187/424 (44%), Gaps = 95/424 (22%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKERDSVSWS 127
           C N  Q++Q+HA ++      +   A+KLL  YA+     L  A  +FN + + +   W+
Sbjct: 82  CTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWN 141

Query: 128 VMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
            ++ G++  +D    F  F   +  C    + +T PF+ +A    K + +G ++H +V+K
Sbjct: 142 TLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIK 201

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------NKFLL- 238
           + L  D F+  +L++ Y      D A ++F  MP +D+V+W  MI A       +K LL 
Sbjct: 202 ASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLL 261

Query: 239 -----------DVILGTAV-----------------------------------IDMYAK 252
                      +VI   +V                                   +DMY K
Sbjct: 262 FQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVK 321

Query: 253 CGSIDSAREIFDRMRQKNVISWS-------------------------------AMIAAY 281
           CG I+ A+++F++M +K+++SW+                               A+I+AY
Sbjct: 322 CGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAY 381

Query: 282 GYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEG--LRLFSSMWDDFAV 338
             +G+ + AL LF  M LS    P+ +T +  L A +  G ++ G  + ++    D   +
Sbjct: 382 EQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHD---I 438

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
             +    T ++D+  + G L++A+++  ++   KD  +W A++GA  ++     A     
Sbjct: 439 NLNCHLATSLLDMYAKCGNLNKAMEVFHAVE-RKDVYVWSAMIGALAMYGQGKAALDLFS 497

Query: 399 SLLE 402
           S+LE
Sbjct: 498 SMLE 501



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 12/218 (5%)

Query: 25  TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPK--FFISSLLSCRNIFQI---RQV 79
           TAA       +EQN   PRV + +  + Q ++   P     I +L +   +  I     +
Sbjct: 371 TAAWNALISAYEQNG-KPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWI 429

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           H  I       N  +A  LL +YA    L  A  +F+ ++ +D   WS M+G  +     
Sbjct: 430 HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQG 489

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGL--DIDQFVC 196
               + F   +   ++ ++ T   ++ AC     +  G +L   +    G+   I  +VC
Sbjct: 490 KAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVC 549

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGA 233
             +VD++ +  +++ A    ++MP       W  ++GA
Sbjct: 550 --VVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGA 585


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 296/510 (58%), Gaps = 30/510 (5%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++  N ++   + H  + +A  LF+ M ER+S SW+ M+  + K+ D      + R   
Sbjct: 75  DVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDI----NSARLMF 130

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
            C    D  +   +I      K +V  +   ++ L  G   +      ++  Y +C    
Sbjct: 131 DCNPVKDVVSWNAIIDGYCKSKQLVAAQ---ELFLLMGSARNSVTWNTMISAYVQCGEFG 187

Query: 211 DARQLFDQMPTRDL----VTWTVMIGA-------------------NKFLLDVILGTAVI 247
            A  +F QM + ++    VT   ++ A                    +  +DV+LG A+I
Sbjct: 188 TAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALI 247

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMY KCG++++A ++F  + +KN+  W+++I   G +G+G++A+  F +M    + P+ +
Sbjct: 248 DMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 307

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TFV +L  CSH+GL+  G R FS M   + + P V+HY CMVDLLGRAG L EAL+LI +
Sbjct: 308 TFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRA 367

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M ++ +  + G+LL AC+IHK+  L E   + LLE  P + G+YV LSN+YA+  RW DV
Sbjct: 368 MPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLYASLSRWDDV 427

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
              R LM +R + K PG + IEV N +H+F  GD++HPQ  +I   L  ++++L+  G++
Sbjct: 428 NTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIAKELKGQGHV 487

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P+T   LHD++EE K G +  HSE++A+AFGL++TP G  IR++KNLR C DCHS +K +
Sbjct: 488 PNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLI 547

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S   +R IIVRD  RFHHF  G+CSC DYW
Sbjct: 548 SNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 131/296 (44%), Gaps = 50/296 (16%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           +   ++R+C    +  +G   H  ++K G + D  +   L+D YAK   +  A+++F  M
Sbjct: 12  SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGM 71

Query: 220 PTRDLVTWTVMIGA-----------NKF-------------------------------- 236
           P RD+V    MI A           N F                                
Sbjct: 72  PRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCKLGDINSARLMFD 131

Query: 237 ---LLDVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALD 292
              + DV+   A+ID Y K   + +A+E+F  M   +N ++W+ MI+AY   G+   A+ 
Sbjct: 132 CNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAIS 191

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           +F  M S  V P  +T VSLL AC+H G ++ G  +   +     ++ DV     ++D+ 
Sbjct: 192 MFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTK-RLKIDVVLGNALIDMY 250

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
            + G L+ A+ +   +S  K+   W +++    ++   + A +AA  ++E++   P
Sbjct: 251 CKCGALEAAIDVFHGLS-RKNIFCWNSIIVGLGMNGRGEEA-IAAFIVMEKEGIKP 304


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 312/567 (55%), Gaps = 63/567 (11%)

Query: 70  CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GMKERDSVS 125
           C N+ Q+   RQ+H+ ++  G      V   L   Y+    L DA  +F+     R+ VS
Sbjct: 312 CANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W+ ++ G  +  D       F       +  + +T   +++A       ++   IH  V+
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLS----ILPPQIHAQVI 427

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------- 230
           K+      FV  AL+  Y+K    +DA  +F  +  +D+V W+ M               
Sbjct: 428 KTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATY 487

Query: 231 ---------IGANKFLLDVIL-------------------------------GTAVIDMY 250
                    I  N+F +  ++                                +A++ MY
Sbjct: 488 LFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMY 547

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           ++ G+IDSA+ +F+R   ++++SW++MI+ Y  HG   KA++ F  M +S +  + +TF+
Sbjct: 548 SRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFL 607

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           +++  C+H GLV EG + F SM  D  + P ++HY CMVDL  RAG+LDE + LI  M  
Sbjct: 608 AVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPF 667

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
                +W  LLGACR+HKNV+L + +A  LL  +P +   YVLLSN+YA AG+W++  ++
Sbjct: 668 PAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEV 727

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R LM  R++KK  G +WI+++NK+H F   D +HP S++IY+ L  +  +L+  GY P+T
Sbjct: 728 RKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNT 787

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +F LHD+ E+ K   L +HSE+LA+AFGLIATP GT ++I+KNLRVCGDCH  +K VS I
Sbjct: 788 SFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMI 847

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             R II+RD +RFHHF GGACSC D+W
Sbjct: 848 EDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 162/363 (44%), Gaps = 54/363 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VHAQ V  G  +++ V N L+ +YA    + DA ++FN M+ RD VSW+ ++ G    
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLN 280

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +   + F E      ++   T   VI+ C + K + + R +H  VLK G  +   V 
Sbjct: 281 ECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM 340

Query: 197 AALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA---------------------- 233
            AL D Y+KC  + DA  +F     +R++V+WT +I                        
Sbjct: 341 TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRV 400

Query: 234 --NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDR 265
             N+F    +L                          GTA++  Y+K GS + A  IF  
Sbjct: 401 MPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKM 460

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-HTGLVEE 324
           + QK+V++WSAM++ +   G  + A  LF  M    + PN  T  S++ AC+  +  V++
Sbjct: 461 IEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQ 520

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G R F ++   +     +   + +V +  R G +D A  + E  + ++D   W +++   
Sbjct: 521 G-RQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT-DRDLVSWNSMISGY 578

Query: 385 RIH 387
             H
Sbjct: 579 AQH 581



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 158/387 (40%), Gaps = 73/387 (18%)

Query: 58  VDPKFFISSLLSCRNI---FQIRQVHAQIVAGGTLTNLIVA-NKLLYIYALHKALTDAHA 113
           VD       L +CR++       Q+H   V  G     + A   L+ +Y    ++ +   
Sbjct: 97  VDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIE 156

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F GM +++ V+W+ ++ G +           F      G+  + +T   V+ A   +  
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           + +G+ +H   +K G     FVC +L++MYAKC +++DA+ +F+ M TRD+V+W  ++  
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 234 ---NKFLLDVI---------LGTAVIDMYA------------------------------ 251
              N+  L+ +         +G      YA                              
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 252 ------------KCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                       KCG +  A  IF      +NV+SW+A+I+    +G    A+ LF  M 
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMR 396

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGR 354
             RV+PN  T+ ++L A          L +         ++ + +H     T ++    +
Sbjct: 397 EDRVMPNEFTYSAMLKA---------SLSILPPQIHAQVIKTNYQHIPFVGTALLASYSK 447

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALL 381
            G  ++AL + + M  +KD   W A+L
Sbjct: 448 FGSTEDALSIFK-MIEQKDVVAWSAML 473



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 138/317 (43%), Gaps = 58/317 (18%)

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           +++    +   + F    R G+ +DS TL  V++ACR   D V+G  +H + +K G D  
Sbjct: 74  YARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRG 133

Query: 193 QFVCA-ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------------- 230
           +     +LVDMY KC  + +  ++F+ MP +++VTWT +                     
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 231 ---IGANKFLLDVILG------------------------------TAVIDMYAKCGSID 257
              I  N F    +L                                ++++MYAKCG ++
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            A+ +F+ M  ++++SW+ ++A    +    +AL LF    ++     + T+ +++  C+
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 318 HTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           +   +    +L S +    F +  +V   T + D   + G L +AL +    +  ++   
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 377 WGALLGACRIHKNVDLA 393
           W A++  C  + ++ LA
Sbjct: 372 WTAIISGCIQNGDIPLA 388



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 94/192 (48%), Gaps = 11/192 (5%)

Query: 61  KFFISSLL---SCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +F ISS++   +C +  + Q RQ HA  +       + V++ L+ +Y+    +  A  +F
Sbjct: 501 EFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVF 560

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
               +RD VSW+ M+ G+++    +   ETFR+    G+Q+D  T   VI  C     +V
Sbjct: 561 ERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVV 620

Query: 176 MGRLIHDIVL---KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMI 231
            G+   D ++   K    ++ + C  +VD+Y++   +D+   L   MP     + W  ++
Sbjct: 621 EGQQYFDSMVRDHKINPTMEHYAC--MVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLL 678

Query: 232 GANKFLLDVILG 243
           GA +   +V LG
Sbjct: 679 GACRVHKNVELG 690


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/518 (39%), Positives = 304/518 (58%), Gaps = 32/518 (6%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+     G   N+ VA+  + +YA      DA+ +F  M+ RD VSW+ M+ GF+  
Sbjct: 142 RQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHA 201

Query: 137 ADFINCFETFREFI--RCGMQLDSYTLPFVIRACRDRK--DIVMGRLIHDIVLKSGLDID 192
             F    + FRE +  +C  + D+ T+  ++ +    +  DI + + + D +   GL   
Sbjct: 202 GLFGRAMDVFRELVALQCP-KPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL--- 257

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPT----RDLVTWTVM------------------ 230
                A++ +Y   ++  +A +LF +M       D VT   +                  
Sbjct: 258 -ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 316

Query: 231 -IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
            I   +    ++L  A++DMYA CG +  AR++FD M  ++V+SW+++I+AYG HG G++
Sbjct: 317 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 376

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+DLF  M    + P+ I FV++L ACSH GL++ G   F SM  +F + P ++HY CMV
Sbjct: 377 AIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMV 436

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGRAG + EA   I  M ++ +E +WGALLGACRIH N+D+  +AA SLL   P+  G
Sbjct: 437 DLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 496

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
           +YVLLSN+YA AGRW DV+ +R +M  + +KK+PG +  E+ +++H F +GD++HPQS+ 
Sbjct: 497 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKM 556

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY+ L  L  ++   GY P+    LHDV+EE K G+L  HSEKLAIAF LI T  GT IR
Sbjct: 557 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIR 616

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
           I  NLR C DCH   K +S I  R II++D NR H+ +
Sbjct: 617 ITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 160/373 (42%), Gaps = 69/373 (18%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVA---DFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           + +   +R +V ++V++ G +  +   D +  F + R         D YT P  +++C  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFP-DHYTYPLALKSCAA 134

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +V+GR IH    + GLD + FV  + + MYA+C   DDA Q+F++M  RD+V+W  M
Sbjct: 135 TDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAM 194

Query: 231 IGANKFLLDVILGTAVIDMYA-----KCGSIDSA--------------------REIFDR 265
           I    F    + G A +D++      +C   D+                     + +FD 
Sbjct: 195 ISG--FAHAGLFGRA-MDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDE 251

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           MR K +ISW+AM+A Y  +    +A++LF  M    + P+ +T  ++L +C     +  G
Sbjct: 252 MRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG 311

Query: 326 LRLF---------SSM----------------------WDDFAVRPDVKHYTCMVDLLGR 354
            R+          SSM                      +D    R DV  +T ++   GR
Sbjct: 312 KRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTR-DVVSWTSIISAYGR 370

Query: 355 AGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG-- 409
            G   EA+ L E M    +E D   + A+L AC     +D+ +    S+       P   
Sbjct: 371 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLE 430

Query: 410 HYVLLSNVYANAG 422
           HY  + ++   AG
Sbjct: 431 HYACMVDLLGRAG 443


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/585 (37%), Positives = 318/585 (54%), Gaps = 66/585 (11%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHAL 114
           D   F S+L +C  +  +   R++HA ++    L  N  VA+ L+ +YA H+ +  A  +
Sbjct: 118 DGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQV 177

Query: 115 FNGMKE--RDSVSWSVMVGGFSKVADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDR 171
           F+ + +  +    W+ M+ G+++          F R     G      T+  V+ AC   
Sbjct: 178 FDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARS 237

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVM 230
           +       +H  V+K G+  ++FV  AL+DMYA+    D AR++F  +   D+V+W T++
Sbjct: 238 EAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLI 297

Query: 231 IG-------ANKFLL--------------------------------------------- 238
            G       A+ F L                                             
Sbjct: 298 TGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRH 357

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               DV +G+A++DMYAKCG +  +R +FDR+ ++N I+W+ +I AYG HG G +A  LF
Sbjct: 358 ALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLF 417

Query: 295 PMMLSS-RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
             M +S    PN +TF++ L ACSH+G+V+ GL+LF +M  D  V P      C+VD+LG
Sbjct: 418 DRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILG 477

Query: 354 RAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           RAGRLDEA  ++ SM   E+    W  +LGACR+H+NV L E+A + LLE +P+   HYV
Sbjct: 478 RAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYV 537

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LL N+Y+ AG+W   A++R  M RR + K PG +WIEV+  IH+F  G+S HP SEE++ 
Sbjct: 538 LLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHA 597

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
            +  L  ++   GY PDT+  LHD+D+  K   L  HSEKLAIAFGL+    G  IR+ K
Sbjct: 598 HMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAK 657

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVC DCH   K +S +  R I++RD  RFHHF  G CSC DYW
Sbjct: 658 NLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 88/200 (44%), Gaps = 23/200 (11%)

Query: 77  RQVHAQIVAGGTLTN--LIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGG 132
           R+ HA  +  G L        N LL +YA    + DA  LF G      D V+W+ MV  
Sbjct: 34  REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 93

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDI 191
             +   F    +T  + +  G++ D  T    + AC   + + +GR +H  V+K   L  
Sbjct: 94  LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 153

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMP--TRDLVTWTVMIGANKFLLDVILGTAVIDM 249
           + FV +ALVDMYA  + +  ARQ+FD +P   + L  W  MI                  
Sbjct: 154 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG---------------- 197

Query: 250 YAKCGSIDSAREIFDRMRQK 269
           YA+ G  + A  +F RM  +
Sbjct: 198 YAQAGMDEEALRLFARMEAE 217



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 3/141 (2%)

Query: 244 TAVIDMYAKCGSIDSAREIFDRMR--QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            A++ MYA+ G +  A+ +F      + +V++W+ M++     G   +A+     M++  
Sbjct: 55  NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALG 114

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V P+ +TF S L ACS   L++ G  + + +  D  +  +    + +VD+     ++ +A
Sbjct: 115 VRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKA 174

Query: 362 LKLIESM-SVEKDEGLWGALL 381
            ++ + +    K  G+W A++
Sbjct: 175 RQVFDMVPDSGKQLGMWNAMI 195


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/519 (37%), Positives = 291/519 (56%), Gaps = 49/519 (9%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +F  S +L+   +    +VHAQ+V      +  V   LL  Y     + +A  +F+G+ +
Sbjct: 1   EFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDD 60

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRL 179
           +D V+WS M+ G+++  +     + F E  + G++ + +T   ++  C      +  G+ 
Sbjct: 61  KDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQ 120

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
            H   +KS LD    V +AL+ MYAK   I+ A ++F +   +DLV+W  MI        
Sbjct: 121 FHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG------ 174

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                     YA+ G                               Q  KALD+F  M  
Sbjct: 175 ----------YAQHG-------------------------------QAMKALDVFKEMKK 193

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            +V  + +TF+ +  AC+H GLVEEG + F  M  D  + P  +H +CMVDL  RAG+L+
Sbjct: 194 RKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLE 253

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +A+K+IE+M       +W  +L ACR+HK  +L  +AA+ ++  +P++   YVLLSN+YA
Sbjct: 254 KAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYA 313

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
            +G WQ+ AK+R LM  R +KK PG++WIEV+NK + F  GD +HP  ++IY  L  LS 
Sbjct: 314 ESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLST 373

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           +L+  GY PDT++ L D+D+E K   L  HSE+LAIAFGLIATP+G+ + I+KNLRVCGD
Sbjct: 374 RLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGD 433

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEG-GACSCRDYW 577
           CH  IK ++ I  R I+VRD+NRFHHF   G CSC D+W
Sbjct: 434 CHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/563 (36%), Positives = 315/563 (55%), Gaps = 36/563 (6%)

Query: 19  FFSSSTTAAIALEPHGHE-QNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIR 77
           FFS S T +++L  + H  Q+ + P           FT       F S + +C+   + +
Sbjct: 77  FFSLSQTPSLSLLFYSHMLQHCVTPNA---------FT-------FPSLIRACKLEEEAK 120

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HA ++  G   +    N L+++Y    +L DA  +F  M + + VSW+ +V G+S+  
Sbjct: 121 QLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWG 180

Query: 138 DFINCFETFREFIRCGMQLDSYT--LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                F  F E + C     S+   +   ++  R R+   + R +    ++  +++D+FV
Sbjct: 181 LVDEAFRVF-ELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMR---VEKKMELDRFV 236

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
            A ++        ++    +   +    +V            LD  L T +IDMY KCG 
Sbjct: 237 AATMLSACTGVGALEQGMWIHKYVEKTGIV------------LDSKLATTIIDMYCKCGC 284

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLY 314
           +D A  +F  ++ K V SW+ MI  +  HG+G+ A+ LF  M   + V P+ ITFV++L 
Sbjct: 285 LDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLT 344

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           AC+H+GLVEEG   F  M D   + P  +HY CMVDLL RAGRL+EA K+I+ M +  D 
Sbjct: 345 ACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDA 404

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            + GALLGACRIH N++L E     ++E  P+N G YV+L N+YA+ G+W+ VA +R LM
Sbjct: 405 AVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLM 464

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             R +KK PG++ IE+E  +++F  G   HP +E IY  +  + E + + G++PDT+  L
Sbjct: 465 DDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVL 524

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HD+ EE +   L+ HSEKLAIA+GL+ T  G  +R+ KNLRVC DCH   K +S +    
Sbjct: 525 HDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCD 584

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           II+RD +RFHHF  G CSC+DYW
Sbjct: 585 IIIRDRSRFHHFSNGECSCKDYW 607


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/523 (36%), Positives = 297/523 (56%), Gaps = 48/523 (9%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           R +  +F  S++L         Q+HAQ++         V   LL  Y+   +  DA ++F
Sbjct: 399 RVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIF 458

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR-DRKDI 174
             ++++D V+WS M+   ++  D       F +    G++ + +T+  VI AC      +
Sbjct: 459 KMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGV 518

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN 234
             GR  H I +K                                                
Sbjct: 519 DQGRQFHAISIKY----------------------------------------------- 531

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           ++   + + +A++ MY++ G+IDSA+ +F+R   ++++SW++MI+ Y  HG   KA++ F
Sbjct: 532 RYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETF 591

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M +S +  + +TF++++  C+H GLV EG + F SM  D  + P ++HY CMVDL  R
Sbjct: 592 RQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSR 651

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG+LDE + LI  M       +W  LLGACR+HKNV+L + +A  LL  +P +   YVLL
Sbjct: 652 AGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLL 711

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+YA AG+W++  ++R LM  R++KK  G +WI+++NK+H F   D +HP S++IY+ L
Sbjct: 712 SNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKL 771

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             +  +L+  GY P+T+F LHD+ E+ K   L +HSE+LA+AFGLIATP GT ++I+KNL
Sbjct: 772 KVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNL 831

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RVCGDCH  +K VS I  R II+RD +RFHHF GGACSC D+W
Sbjct: 832 RVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 162/363 (44%), Gaps = 54/363 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VHAQ V  G  +++ V N L+ +YA    + DA ++FN M+ RD VSW+ ++ G    
Sbjct: 221 QRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLN 280

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +   + F E      ++   T   VI+ C + K + + R +H  VLK G  +   V 
Sbjct: 281 ECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM 340

Query: 197 AALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA---------------------- 233
            AL D Y+KC  + DA  +F     +R++V+WT +I                        
Sbjct: 341 TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRV 400

Query: 234 --NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDR 265
             N+F    +L                          GTA++  Y+K GS + A  IF  
Sbjct: 401 MPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKM 460

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-HTGLVEE 324
           + QK+V++WSAM++ +   G  + A  LF  M    + PN  T  S++ AC+  +  V++
Sbjct: 461 IEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQ 520

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G R F ++   +     +   + +V +  R G +D A  + E  + ++D   W +++   
Sbjct: 521 G-RQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT-DRDLVSWNSMISGY 578

Query: 385 RIH 387
             H
Sbjct: 579 AQH 581



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 158/387 (40%), Gaps = 73/387 (18%)

Query: 58  VDPKFFISSLLSCRNI---FQIRQVHAQIVAGGTLTNLIVA-NKLLYIYALHKALTDAHA 113
           VD       L +CR++       Q+H   V  G     + A   L+ +Y    ++ +   
Sbjct: 97  VDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIE 156

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F GM +++ V+W+ ++ G +           F      G+  + +T   V+ A   +  
Sbjct: 157 VFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGA 216

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           + +G+ +H   +K G     FVC +L++MYAKC +++DA+ +F+ M TRD+V+W  ++  
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 234 ---NKFLLDVI---------LGTAVIDMYA------------------------------ 251
              N+  L+ +         +G      YA                              
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 252 ------------KCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
                       KCG +  A  IF      +NV+SW+A+I+    +G    A+ LF  M 
Sbjct: 337 GNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMR 396

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGR 354
             RV+PN  T+ ++L A          L +         ++ + +H     T ++    +
Sbjct: 397 EDRVMPNEFTYSAMLKA---------SLSILPPQIHAQVIKTNYQHIPSVGTALLASYSK 447

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALL 381
            G  ++AL + + M  +KD   W A+L
Sbjct: 448 FGSTEDALSIFK-MIEQKDVVAWSAML 473



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 138/314 (43%), Gaps = 61/314 (19%)

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           V + ++ F   R   R G+ +DS TL  V++ACR   D V+G  +H + +K G D  +  
Sbjct: 80  VPEVLDQFSVAR---RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVS 136

Query: 196 CA-ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------------------------ 230
              +LVDMY KC  + +  ++F+ MP +++VTWT +                        
Sbjct: 137 AGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEG 196

Query: 231 IGANKFLLDVILG------------------------------TAVIDMYAKCGSIDSAR 260
           I  N F    +L                                ++++MYAKCG ++ A+
Sbjct: 197 IWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+ M  ++++SW+ ++A    +    +AL LF    ++     + T+ +++  C++  
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLK 316

Query: 321 LVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            +    +L S +    F +  +V   T + D   + G L +AL +    +  ++   W A
Sbjct: 317 QLALARQLHSCVLKHGFHLTGNV--MTALADAYSKCGELADALNIFSMTTGSRNVVSWTA 374

Query: 380 LLGACRIHKNVDLA 393
           ++  C  + ++ LA
Sbjct: 375 IISGCIQNGDIPLA 388



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 110/226 (48%), Gaps = 12/226 (5%)

Query: 171 RKDIVMG--RLIHDIVLKSGLD--IDQFVCA----ALVDMYAKCKVIDDARQLFDQMPTR 222
           R+D  +G  R++ D   +  +   +DQF  A     LVD      V+   R + D++   
Sbjct: 60  RRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGE 119

Query: 223 DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
            L    V  G ++   +V  GT+++DMY KCGS+    E+F+ M +KNV++W++++    
Sbjct: 120 QLHCLCVKCGHDRG--EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           +     + + LF  M +  + PN  TF S+L A +  G ++ G R+ +     F  R  V
Sbjct: 178 HAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSV-KFGCRSSV 236

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
                ++++  + G +++A  +   M   +D   W  L+   ++++
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMET-RDMVSWNTLMAGLQLNE 281


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/518 (39%), Positives = 304/518 (58%), Gaps = 32/518 (6%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+H+     G   N+ VA+  + +YA      DA+ +F  M+ RD VSW+ M+ GF+  
Sbjct: 32  RQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHA 91

Query: 137 ADFINCFETFREFI--RCGMQLDSYTLPFVIRACRDRK--DIVMGRLIHDIVLKSGLDID 192
             F    + FRE +  +C  + D+ T+  ++ +    +  DI + + + D +   GL   
Sbjct: 92  GLFGRAMDVFRELVALQCP-KPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGL--- 147

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVM------------------ 230
                A++ +Y   ++  +A +LF +M       D VT   +                  
Sbjct: 148 -ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 206

Query: 231 -IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
            I   +    ++L  A++DMYA CG +  AR++FD M  ++V+SW+++I+AYG HG G++
Sbjct: 207 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 266

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+DLF  M    + P+ I FV++L ACSH GL++ G   F SM  +F + P ++HY CMV
Sbjct: 267 AIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMV 326

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGRAG + EA   I  M ++ +E +WGALLGACRIH N+D+  +AA SLL   P+  G
Sbjct: 327 DLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 386

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
           +YVLLSN+YA AGRW DV+ +R +M  + +KK+PG +  E+ +++H F +GD++HPQS+ 
Sbjct: 387 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKM 446

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY+ L  L  ++   GY P+    LHDV+EE K G+L  HSEKLAIAF LI T  GT IR
Sbjct: 447 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIR 506

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
           I  NLR C DCH   K +S I  R II++D NR H+ +
Sbjct: 507 ITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 138/323 (42%), Gaps = 65/323 (20%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           LP   ++C     +V+GR IH    + GLD + FV  + + MYA+C   DDA Q+F++M 
Sbjct: 15  LPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQ 74

Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYA-----KCGSIDSA---------------- 259
            RD+V+W  MI    F    + G A +D++      +C   D+                 
Sbjct: 75  YRDVVSWNAMISG--FAHAGLFGRA-MDVFRELVALQCPKPDAGTMASILPSMGKARVED 131

Query: 260 ----REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
               + +FD MR K +ISW+AM+A Y  +    +A++LF  M    + P+ +T  ++L +
Sbjct: 132 IALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 191

Query: 316 CSHTGLVEEGLRLF---------SSM----------------------WDDFAVRPDVKH 344
           C     +  G R+          SSM                      +D    R DV  
Sbjct: 192 CGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTR-DVVS 250

Query: 345 YTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           +T ++   GR G   EA+ L E M    +E D   + A+L AC     +D+ +    S+ 
Sbjct: 251 WTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMT 310

Query: 402 ERQPQNPG--HYVLLSNVYANAG 422
                 P   HY  + ++   AG
Sbjct: 311 SEFHIAPKLEHYACMVDLLGRAG 333


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/593 (33%), Positives = 326/593 (54%), Gaps = 60/593 (10%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101
           P  P Q     +     + + ++S L  C+++ + +QVHA I+  G   +    + L+  
Sbjct: 16  PNSPPQ---SSELNAKFNEQGWLSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVAS 72

Query: 102 YALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159
            AL +  ++  A ++F+ ++E  S  ++ M+ G     D       + E +  G++ D++
Sbjct: 73  CALSRWGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNF 132

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV----------CAAL---------- 199
           T PFV++AC     +  G  IH  V K+GL++D FV          C A+          
Sbjct: 133 TYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQM 192

Query: 200 -----------------VDMYAKCKVI-----DDARQLFDQMPTRDLVTWTVMIGA---- 233
                            V+M+ +C ++      + R   ++      ++    +G+    
Sbjct: 193 DEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLG 252

Query: 234 ---------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                    N   L+V++ T++IDMY KCGS++    +F  M  KN  S++ MIA    H
Sbjct: 253 RCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIH 312

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G+G++A+ +F  ML   + P+ + +V +L ACSH GLV EGL+ F+ M  +  ++P ++H
Sbjct: 313 GRGREAVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQH 372

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           Y CMVDL+GRAG L EA  LI+SM ++ ++ +W +LL AC++H N+++ E+AA+++    
Sbjct: 373 YGCMVDLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLN 432

Query: 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTH 464
             NPG Y++L+N+YA A +W +VA+IR  M  + L + PG++ +E    +++F   D + 
Sbjct: 433 KHNPGDYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQ 492

Query: 465 PQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPE 524
           P  E IY M+  +  +L+  GY PD +  L DVDE+ K   L  HS+KLAIAF LI T E
Sbjct: 493 PICETIYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSE 552

Query: 525 GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           G+ IRI +NLR+C DCH++ K +S I  R I VRD NRFHHF+ G CSC+DYW
Sbjct: 553 GSPIRISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 308/555 (55%), Gaps = 54/555 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ H   +  G   +  V + +L++Y     + +A  +F+ +   +  +++ M+ GF   
Sbjct: 133 RQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDR 192

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                     R  +R   Q D  +   V+  C   K++V+G  +H   LK  L+++ +V 
Sbjct: 193 GQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVG 252

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
           +ALVDMY KC    +A ++F+ +P +++V+WT ++ A                       
Sbjct: 253 SALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVR 312

Query: 234 -NKFLLDVILGT------------------------------AVIDMYAKCGSIDSAREI 262
            N+F   V L +                              A+++MY+K GS++ AR +
Sbjct: 313 PNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRV 372

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M  ++V+SW+++I  Y +HG+ ++A++ F  ML +  +P+ +TF+ +L AC+  GLV
Sbjct: 373 FLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLV 432

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           +EG    + M  +  V+P  +HYTCMV LL R GRLDEA + IES  +  D   W +LL 
Sbjct: 433 DEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLS 492

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           +C++++N  L    A+ + + +P++ G YVLLSN+YA A RW  V K+R LM    ++K 
Sbjct: 493 SCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKE 552

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WI+V +++H F+  D  HP  E+I + L  L +K+++ GY+P+    LHDV++E K
Sbjct: 553 PGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQK 612

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
             +L  HSEKLA+AFGLI TP+G  IRIMKN+R+C DCH  IK +S  T R I+VRD  R
Sbjct: 613 EEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVR 672

Query: 563 FHHFEGGACSCRDYW 577
           FH  E G CSC DYW
Sbjct: 673 FHCIEDGVCSCDDYW 687



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 155/366 (42%), Gaps = 74/366 (20%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VHA++V      +++  N L+ +Y     L  A  +F+ M  R+ VS ++++ G++  
Sbjct: 36  KAVHARVVRAARF-DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASS 94

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +     R        L+ Y L   + A    +   MGR  H   +K+GL    +VC
Sbjct: 95  GRHRDALALLRV---ADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL------------------- 237
           +A++ MY +C  +D+A ++FD + + ++  +  MI  N FL                   
Sbjct: 152 SAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMI--NGFLDRGQMDGSTSIVRSMVRNV 209

Query: 238 ------------------LDVILG-------------------TAVIDMYAKCGSIDSAR 260
                              +V+LG                   +A++DMY KC     A 
Sbjct: 210 GQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEAN 269

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+ + +KN++SW+A++ AY  +   + AL LF  M    V PN  T+   L +C+   
Sbjct: 270 RVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLA 329

Query: 321 LVEEG-----LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
            ++ G       + +  W    V         ++++  ++G +++A ++  SM   +D  
Sbjct: 330 TLKNGNALGACTMKTGHWGLLPV------CNALMNMYSKSGSVEDARRVFLSMPC-RDVV 382

Query: 376 LWGALL 381
            W +++
Sbjct: 383 SWNSII 388


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 328/636 (51%), Gaps = 107/636 (16%)

Query: 49  GPDCQFTRSVDPKFFISS-LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA 107
            P+  F  S  P   +S    SC+    ++Q+HA  +  G + + + A +++   A    
Sbjct: 7   NPNRTFNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSR 66

Query: 108 LTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF--IRCG--MQLDSYTLP 162
             D A A+F  M E +   W+ ++   ++  D     E    F  + C   ++ + +T P
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV---------------------CAALVD 201
            V++AC     +  G+ IH +++K G   D+FV                     C  +VD
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 202 MYAKCKV--------------------------IDDARQLFDQMPTR------------- 222
               C++                          I  A+ LFD+MP R             
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYA 246

Query: 223 ----------------------------------------DLVTWT-VMIGANKFLLDVI 241
                                                   +L  W  +  G NK  +D +
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDV 306

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG+A++DMY+KCGSID A ++F+ + ++N I+WSA+I A+  HG+ + A+  F +M  + 
Sbjct: 307 LGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN + ++ +L ACSH GLVEEG   FS M     ++P ++HY CMVDLLGRAG L+EA
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            +LI +M +E D+ +W ALLGAC++HKN+ + E  A++L+E  P + G YV LSN+YA+ 
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           G W+ VA++R  M    ++K PG +WIE+   IH+F V D +H +++EI  ML  +S KL
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
              GY P+T     + DE+ +   L  HSEK+A+AFGLI+T     ++I+KNLR+C DCH
Sbjct: 547 RSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCH 606

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + +K +S I +R IIVRD  RFH FE G+CSC DYW
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/467 (40%), Positives = 267/467 (57%), Gaps = 48/467 (10%)

Query: 111  AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
            A  LF+GM +RD V+WS M+ G+  V         F E +  G  +   TL  V+ AC  
Sbjct: 1404 ARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQ 1463

Query: 171  RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
               +  G+ +H  V   G+                                         
Sbjct: 1464 IGTLDRGKWVHWYVRSRGMQ---------------------------------------- 1483

Query: 231  IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                   + + LGTA++DMY+KCG++ +A E+F+ M ++NV +W++ ++    +G G + 
Sbjct: 1484 -------MSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTEC 1536

Query: 291  LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
            L LF  M  + + PN ++FV++L  CS  GLV+EG   F SM D + V P  +HY CMVD
Sbjct: 1537 LQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSM-DKYGVDPWPEHYGCMVD 1595

Query: 351  LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
            L GRAGRLD+A+  I  M +E  EG+WGALL A RIH +VDL + A   LL  + +N   
Sbjct: 1596 LYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAA 1655

Query: 411  YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
            +V LSN+YA +  W+ V+++R +M  + +KK+PGW+ IEV+ K+H+F VG   HP+  EI
Sbjct: 1656 HVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEI 1715

Query: 471  YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
              ML  +  +L L GY  +T   L D++EE K G +  HSEKLA+AFGLI  PE   IRI
Sbjct: 1716 ELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRI 1775

Query: 531  MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +KNLRVC DCH +IK VS +  R I++RD NRFHHF+GG CSCRDYW
Sbjct: 1776 VKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 1822


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 314/575 (54%), Gaps = 62/575 (10%)

Query: 64   ISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
            IS+L SC ++  I    Q+H + +  G   ++ V+N LL +Y     + +    F+ M +
Sbjct: 494  ISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLD 553

Query: 121  RDSVSWSVMVGGFSKV-ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             D VSW+ ++G  +      +   E+F   +R G   +  T   ++ A        +G+ 
Sbjct: 554  YDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ 613

Query: 180  IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA---NK 235
            IH +VLK  +  D  +  AL+  Y KC  +     +F +M  R D V+W  MI     N+
Sbjct: 614  IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNE 673

Query: 236  FL---LDVI------------------------------------------------LGT 244
             L   +D++                                                +G+
Sbjct: 674  LLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGS 733

Query: 245  AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
            A++DMYAKCG ID A   F+ M  +N+ SW++MI+ Y  HG G K+LDLF  M     LP
Sbjct: 734  ALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLP 793

Query: 305  NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
            + +TFV +L ACSH GLV EG   F SM + + + P ++H++CMVDLLGR G L++    
Sbjct: 794  DHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDF 853

Query: 365  IESMSVEKDEGLWGALLGA-CRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
            +  M V+ +  +W  +LGA CR + +N  L   AA+ LLE +P N  +Y+LLSN+YA+ G
Sbjct: 854  LNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGG 913

Query: 423  RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
            +W DVAK R  M +  +KK  G +W+ +++ +H F  GD +HP+ + IY  L  L+ K+ 
Sbjct: 914  KWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMR 973

Query: 483  LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
            LAGYIP+T F L+D++ E K   L  HSEK+A+AF ++  P    IRI+KNLRVCGDCHS
Sbjct: 974  LAGYIPETRFALYDLEGESKEELLSYHSEKIAVAF-VLTRPSKMPIRILKNLRVCGDCHS 1032

Query: 543  FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
              K++S I  R I++RD+NRFHHFE G CSC D+W
Sbjct: 1033 AFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 185/437 (42%), Gaps = 80/437 (18%)

Query: 78  QVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +VHA ++  G L   I + N L+ +YA   A+ DA  +F  M  +DSV+W+ M+ G  + 
Sbjct: 409 EVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQN 468

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F+   +TF+E  R  +   ++T+   + +C     I +G  +H   LK GLD+D  V 
Sbjct: 469 KQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVS 528

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------NKFLL------ 238
            AL+ +Y +C  + + ++ F  M   D V+W  +IGA              FL+      
Sbjct: 529 NALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGW 588

Query: 239 ---------------------------------DVILGTAVIDMYAKC----GSIDSARE 261
                                            +V   TA+ +    C    G +     
Sbjct: 589 DPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCEN 648

Query: 262 IFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           IF RM  +++ +SW++MI+ Y ++    KA+D+   M+      +  TF ++L AC+   
Sbjct: 649 IFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVA 708

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            +E G+ +         +  D+   + +VD+  + GR+D A +  E M   ++   W ++
Sbjct: 709 TLERGMEVHGCSVRA-CLESDIVIGSALVDMYAKCGRIDYASRFFEMMPA-RNLYSWNSM 766

Query: 381 LGACRIH----KNVDL-AEMAAKSLLERQPQNPG----------------HYVLLSNVYA 419
           +     H    K++DL A+M  +  L       G                H+  +S +Y 
Sbjct: 767 ISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYG 826

Query: 420 NAGRWQDVAKIRDLMTR 436
            A R +  + + DL+ R
Sbjct: 827 LAPRMEHFSCMVDLLGR 843



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 143/345 (41%), Gaps = 54/345 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            ++H Q+   G + +L + N L+ IYA    L     +F+ M  R+ VSWS ++ G+++ 
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRN 152

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRD--RKDIVMGRLIHDIVLKSGLDIDQF 194
                  E FR+ +  G   + Y    VIRAC++     +  G  IH ++ K+    D  
Sbjct: 153 RMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVT 212

Query: 195 VCAALVDMYAKC-KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
               L+ MY     ++D AR+ FD +  R+LV+   M                I +Y + 
Sbjct: 213 ASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSM----------------ISVYCQR 256

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G   SA +IF  M QK V+            G G K              PN  TF SL+
Sbjct: 257 GDAVSAFDIFSTM-QKEVM------------GDGLK--------------PNEYTFGSLI 289

Query: 314 YA-CSHTGLVEEGLRLFSSMW---DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            A CS   L   GL L   +    +      D+   + +V    +AG +  A  + + MS
Sbjct: 290 SATCS---LANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMS 346

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
                 L G ++G  R  +  +  E+  + + +    NP  Y+++
Sbjct: 347 YRNVVSLNGLIIGLVRQKRGEEAVELFME-MKDSVELNPNSYMII 390



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 153/346 (44%), Gaps = 55/346 (15%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTD-AHALFNGMKERDSVSWSVMVGGFSKV 136
           Q+H  +     + ++  +N L+ +Y     + D A   F+ +  R+ VS + M+  + + 
Sbjct: 197 QIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQR 256

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D ++ F+ F       MQ +                          V+  GL  +++  
Sbjct: 257 GDAVSAFDIFST-----MQKE--------------------------VMGDGLKPNEYTF 285

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
            +L+   A C + +    L +Q+ TR        +  + FL D+ +G+A++  +AK GSI
Sbjct: 286 GSLIS--ATCSLANSGLVLLEQLLTR--------VEKSGFLHDLYVGSALVSGFAKAGSI 335

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             A+ IF +M  +NV+S + +I       +G++A++LF M +   V  N  +++ +L A 
Sbjct: 336 GYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF-MEMKDSVELNPNSYMIILTAF 394

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHY-----TCMVDLLGRAGRLDEALKLIESMSVE 371
               ++E G R  S +   F +R  + +        ++++  + G +++A  +   M   
Sbjct: 395 PEFHVLENGKRKGSEV-HAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMD-N 452

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLE--RQPQNPGHYVLLS 415
           KD   W +++    + +N    E A K+  E  R    P ++ ++S
Sbjct: 453 KDSVTWNSMITG--LDQNKQFLE-AVKTFQEMRRTELYPSNFTMIS 495


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/556 (36%), Positives = 303/556 (54%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH QI+      +  V   LL +Y     ++DA  +FN M + D V WS M+  F + 
Sbjct: 267 KSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  + F       +  + +TL  ++  C   K   +G  +H +V+K G D+D +V 
Sbjct: 327 GFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVS 386

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------------------- 231
            AL+D+YAKC+ +D A +LF ++ ++++V+W  +I                         
Sbjct: 387 NALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVS 446

Query: 232 ----------GANKFLLDVILGTAV-------------------IDMYAKCGSIDSAREI 262
                     GA   L  + LG  V                   IDMYAKCG I  A+ +
Sbjct: 447 VTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTV 506

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ M   +V SW+A+I+ Y  HG G++AL +F +M  S   PN +TF+ +L  CS+ GL+
Sbjct: 507 FNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLI 566

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G   F SM  D  + P ++HYTCMV L GR+G+LD+A+ LIE +  E    +W A+L 
Sbjct: 567 DQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLS 626

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           A     N + A  +A+ +L+  P++   YVLLSN+YA A +W +VA IR  M  + +KK 
Sbjct: 627 ASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKE 686

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIE +  +H FSVG S HP  + I  ML  L+ K   AGY+PD N  L D+D+E K
Sbjct: 687 PGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEK 746

Query: 503 VGNLYSHSEKLAIAFGLIATPEG-THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
              L+ HSE+LA+A+GL+  P     I IMKNLR+C DCHS +K +S+I +R +++RD N
Sbjct: 747 DKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMN 806

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC D+W
Sbjct: 807 RFHHFHAGVCSCDDHW 822



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 152/352 (43%), Gaps = 69/352 (19%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H  I+  G+  +L   N LL  Y       DA  LF+ M ER++VS+  +  G++  
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA-C 127

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIR--ACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
            D +  +       R G +L+ +     ++     D+ +I     +H  ++K G D + F
Sbjct: 128 QDPVGLYSRLH---REGHELNPHVFTSFLKLFVSLDKAEICW--WLHSPIVKLGYDSNAF 182

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW--------------------------- 227
           V AAL++ Y+ C  +D AR +F+ +  +D+V W                           
Sbjct: 183 VGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDG 242

Query: 228 --------------TVMIGANKFL-------------LDVILGTAVIDMYAKCGSIDSAR 260
                         ++ +GA  F              LD  +G  ++ +Y + G +  A 
Sbjct: 243 FMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAF 302

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS--- 317
           ++F+ M + +V+ WS MIA +  +G   KA+D+F  M    V+PN  T  S+L  C+   
Sbjct: 303 KVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGK 362

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            +GL E+   L   +  D     DV     ++D+  +  ++D A+KL   +S
Sbjct: 363 CSGLGEQLHGLVVKVGFDL----DVYVSNALIDVYAKCEKMDTAVKLFAELS 410



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 50/210 (23%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS+    ++R C  + D V  + IH  +LK G  +D F    L++ Y K     DA  L
Sbjct: 47  LDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 216 FDQMPTRDLVTWTVMIGA-------------------------NKFL-----LD------ 239
           FD+MP R+ V++  +                              FL     LD      
Sbjct: 107 FDEMPERNNVSYVTLTQGYACQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICW 166

Query: 240 ------VILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                 V LG         A+I+ Y+ CGS+DSAR +F+ +  K+++ W+ +++ Y  +G
Sbjct: 167 WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENG 226

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
             + +L L   M     +PN  TF + L A
Sbjct: 227 CFEDSLQLLSRMGMDGFMPNNYTFDTALKA 256


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 294/518 (56%), Gaps = 50/518 (9%)

Query: 63   FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            F S++ +C  I  +RQ   +HAQ  A G   +L + N L+ +YA    + +A+  F  + 
Sbjct: 567  FASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG 626

Query: 120  ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +++++SW+ +V G ++   F    + F   +R   +++ +T    I A     +I  G+ 
Sbjct: 627  DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ 686

Query: 180  IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
            IH +VLK+G D ++ V  +L                                        
Sbjct: 687  IHSMVLKTGYDSEREVSNSL---------------------------------------- 706

Query: 240  VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                   I +YAK GSI  A   F+ M ++NVISW+AMI  Y  HG G +AL LF  M  
Sbjct: 707  -------ISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759

Query: 300  SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
              ++PN +TFV +L ACSH GLV+EGL  F SM+    + P  +HY C+VDLLGRAG+LD
Sbjct: 760  CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819

Query: 360  EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             A++ I+ M +  D  +W  LL AC IHKN+++ E AA  LLE +P++   YVL+SN+YA
Sbjct: 820  RAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879

Query: 420  NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
             + +W      R LM  R +KK PG +WIEV+N +H F  GD  HP + +IY  +  L+ 
Sbjct: 880  VSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNR 939

Query: 480  KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
            +    GY+ D+   L++ ++  K    + HSEKLAIAFGL++      IR+MKNLRVC D
Sbjct: 940  RTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCND 999

Query: 540  CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            CH++IK+VS I+ R IIVRDA+RFHHF+GG CSC+D+W
Sbjct: 1000 CHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 163/380 (42%), Gaps = 60/380 (15%)

Query: 62  FFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           + +SS+LS     Q+     Q+H  ++  G  +   V N L+ +Y+  + L  A  +F+ 
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFST 321

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  RD VS++ ++ G  +        E F +  R  ++ D  T+  ++ AC     +  G
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
             +H   +K+G+  D  +  +L+D+Y+KC  ++ A + F    T ++V W VM+ A    
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQL 441

Query: 234 --------------------NKFL------------------------------LDVILG 243
                               N+F                               L+V + 
Sbjct: 442 DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVC 501

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           + +IDMYAK G +  A  I  R+ + +V+SW+AMIA Y  H    +AL LF  M    + 
Sbjct: 502 SVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQ 561

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            + I F S + AC+    + +G ++ +  +       D+     ++ L  R GR+ EA  
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAA-GFGADLSINNALISLYARCGRIQEAYL 620

Query: 364 LIESMSVEKDEGLWGALLGA 383
             E +  +K+   W +L+  
Sbjct: 621 AFEKIG-DKNNISWNSLVSG 639



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 153/378 (40%), Gaps = 59/378 (15%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           + +   L+  ++F+  ++H +I   G     ++ + L+  Y  H     A  +F+    R
Sbjct: 63  WLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG--RL 179
              SW+ M+  F         F  FR  +  G+  + YT   V++AC    DI     + 
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQ 181

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H      G D    V   L+D+Y+K   I+ A+++F+ +  +D+VTW  MI        
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 234 ------------------NKFLLDVILGTA------------------------------ 245
                               ++L  +L  +                              
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ +Y++   + SA  IF  M  ++ +S++++I+     G   +AL+LF  M    + P+
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            IT  SLL AC+  G + +G++L S       +  D+     ++DL  +   ++ A K  
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 366 ESMSVEKDEGLWGALLGA 383
            +   E +  LW  +L A
Sbjct: 421 LTTETE-NIVLWNVMLVA 437


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/557 (37%), Positives = 307/557 (55%), Gaps = 60/557 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMKERDSVSWSVMVGGFSK 135
           Q H QI   G +    V   L+ +Y     + +A  +F  N    + +V ++ +V G+  
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 129

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            +        FR+    G+ ++S TL  +I AC    ++ +G  +H   LK G D D  V
Sbjct: 130 NSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 189

Query: 196 ----------CA---------------------ALVDMYAKCKVIDDARQLFDQMPTR-- 222
                     C                      A+V  YA+  +  +  +L+  M     
Sbjct: 190 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 249

Query: 223 --DLVTWTVM-------------------IGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
             D VT   +                   I A+ F  +  L  A+I+MYA+CG++  A+ 
Sbjct: 250 HPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQA 309

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M ++ ++SW+A+I  YG HG G+ A+ LF  M+ S + P+   FV +L ACSH GL
Sbjct: 310 VFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGL 369

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            ++GL  F  M  ++ + P  +HY+CMVDLLGRAGRL EA  LIESM ++ D  +WGALL
Sbjct: 370 TDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 429

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC+IHKNV+LAE+A + ++E +P+N G+YVLLSN+Y+NA   + V +IR +M  ++LKK
Sbjct: 430 GACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKK 489

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE-KLELAGYIPDTNFELHDVDEE 500
            PG +++E++ ++H F VGD  H QS+EIYR+L  L    ++  G     N E  + D  
Sbjct: 490 DPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESNKDGF 549

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            +VG    HSEKLA+AFGL+ T  G  + I+KNLR+C DCH F K VS I  R + VRDA
Sbjct: 550 TRVG---VHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDA 606

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF  G+CSC+DYW
Sbjct: 607 TRFHHFRNGSCSCKDYW 623



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 60/336 (17%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           S  W+  +   +K   F+     + + +R G + +++T PF +++C      ++G   H 
Sbjct: 14  STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 73

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ-MPTRDL----------------- 224
            + K G   + FV   L+ MY K  ++D+AR++F++   +R L                 
Sbjct: 74  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 133

Query: 225 -------------------VTWTVMIGANKFLLDVILGTAV------------------- 246
                              VT   +I A    +++ LG+++                   
Sbjct: 134 SEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCF 193

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I MY KCGS++ A+++FD M  K +ISW+AM++ Y  +G     L+L+  M  + V P+ 
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 253

Query: 307 ITFVSLLYACSHTGLVEEGLRL-FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           +T V +L +C++ G    G  + F      F   P + +   ++++  R G L +A  + 
Sbjct: 254 VTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKAQAVF 311

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           + M  E+    W A++G   +H + ++A    K ++
Sbjct: 312 DGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 346


>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Vitis vinifera]
          Length = 607

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/579 (37%), Positives = 327/579 (56%), Gaps = 72/579 (12%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTL---TNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L SC  I Q++Q+HAQ +   +        + +++L+  +LH  L  A  +F+ ++  +S
Sbjct: 33  LNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHD-LRYAFRVFHQIENPNS 91

Query: 124 VSWSVMVGGFSKVADFI-NCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLI 180
             W+ ++   ++  D   +    +   +  G  MQ D +T PFV++AC     +  G  I
Sbjct: 92  FMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQ-DKHTFPFVLKACAYLFALSEGEQI 150

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------- 232
           H  +LK G D D ++  +LV  YA C  +D A+ +FD+M  R LV+W V+I         
Sbjct: 151 HAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEF 210

Query: 233 ---------------------------------------ANKFLL---------DVILGT 244
                                                  A+ FLL         DV+L T
Sbjct: 211 DAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGMWAHVFLLKKFDADRVNDVLLNT 270

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-SSRVL 303
           +++DMY KCGS++ A ++F RM +++V SW++MI  +  HG+   AL+ F  M+ + +++
Sbjct: 271 SLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLM 330

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           PN ITFV +L AC+H GLV EG R F  M  ++ ++P+++HY C+VDLL RAG +DEAL 
Sbjct: 331 PNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALD 390

Query: 364 LIESMSVEKDEGLWGALLGAC-RIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANA 421
           ++ +M +  D  +W +LL AC + +  V+L+E  A+ +LE +     G YVLLS VYA+A
Sbjct: 391 VVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASA 450

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            RW DV  +R LMT + + K PG + IE++   H+F  GD++HPQ+EEIY  L  + E++
Sbjct: 451 SRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERV 510

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYS---HSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E  GY PD++ +   VDE +  G  YS   HSE+LAIAFGL+ T  G  IRI KNLRVC 
Sbjct: 511 ERVGYSPDSS-QAPMVDETID-GKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCN 568

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +CH   K +S +  R IIVRD  RFHHF+ GACSC DYW
Sbjct: 569 NCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW 607


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/531 (39%), Positives = 303/531 (57%), Gaps = 45/531 (8%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK-- 135
           QVH  +V  G   ++ + N L++ YA    +   H +F GM ER+ VSW+ ++ G+++  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 136 -VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              + ++ F      +     +D Y     I A +        RL  + V     D +  
Sbjct: 212 RPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAK--------RLFDECV-----DRNLV 258

Query: 195 VCAALVDMYAKCKVIDDARQLFDQM----PTRDLVTWTVMIGANKFLLDVILG------- 243
           +   ++  YA+  +  +A  + D+M    P  D VT    I A+  L+D+  G       
Sbjct: 259 LYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYW 318

Query: 244 -----------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                            TA++DM+A+CG   SA ++F++M +++V +W+A I      G 
Sbjct: 319 VHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGN 378

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           G+ A  LF  ML   V P+ + FV +L ACSH G VE+GL +FS M +D  + P ++HY 
Sbjct: 379 GEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYG 437

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
           CMVDLLGRAG L EA  LI+SM +E ++ +WG+LL ACR+HKNV++A  AA+ + E  PQ
Sbjct: 438 CMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQ 497

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
             G +VLLSN+YA+AG+W DVA++R  +  + ++K+PG + ++V   IH+F+ GD +HP+
Sbjct: 498 RAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPE 557

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
              I  ML  ++ +   AG+IPD +  L DVDE+ K   L  HSEKLAIAFGLIAT    
Sbjct: 558 MTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSM 617

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IR++KNLR+C DCHSF K  S I  R IIVRD NRFH F  G CSC DYW
Sbjct: 618 PIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 169/353 (47%), Gaps = 34/353 (9%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGG------TLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           SL  C+ + Q++Q+H QI   G      TLT L+ A   +   A  ++L  A   F   K
Sbjct: 31  SLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEI---ASPESLDYARKAFELFK 87

Query: 120 E---RDSVSW--SVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           E    D   +  + ++ G+S           +   +  G+  + YT PFV+  C      
Sbjct: 88  EDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF 147

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
             G  +H  V+K GL+ D F+   L+  YA+C  +D   ++F+ M  R++V+WT +I   
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 232 --------GANKF--LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                     + F  +L+ ++  A++DMY KCG+ID+A+ +FD    +N++ ++ +++ Y
Sbjct: 208 ARGDRPKEAVSLFFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNY 267

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-----GLVEEGLRLFSSMWDDF 336
              G  ++AL +   ML     P+R+T +S + A +       G V  G  + + +  + 
Sbjct: 268 ARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKN- 326

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
            +  D++  T +VD+  R G    A+++   M+ E+D   W A +G   +  N
Sbjct: 327 GIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAAIGTMAMEGN 378


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 298/523 (56%), Gaps = 49/523 (9%)

Query: 57  SVDP-KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +V P +F  S++L+      + Q+HAQI+         V   LL  Y+      +A ++F
Sbjct: 399 NVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIF 458

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDI 174
             +  +D V+WS M+  +S+  D       F +    GM+ + +T+   I AC      I
Sbjct: 459 KMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGI 518

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN 234
             GR  H I +K                                                
Sbjct: 519 DQGRQFHAISIK-----------------------------------------------Y 531

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           ++   + +G+A++ MYA+ GSIDSAR +F+R   ++++SW++MI+ Y  HG  K+ALD F
Sbjct: 532 RYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTF 591

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M +  +  +  TF++++  C+H GLV+EG + F SM  D  + P ++HY+CMVDL  R
Sbjct: 592 RQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSR 651

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG+LDE + LIE M       +W  LLGACR+HKNV+L ++AA+ LL  +P +   YVLL
Sbjct: 652 AGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLL 711

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+YA AGRW++  ++R LM  +++KK  G +WI+++NK+H F   D +HP SE+IY  L
Sbjct: 712 SNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKL 771

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             ++ +L+  GY P+T+  LHD+ EE K   L  HSE+LA+AFGLIATP  T ++I+KNL
Sbjct: 772 KAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNL 831

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RVCGDCH  +K VS I  R II+RD +RFHHF  GACSC D+W
Sbjct: 832 RVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 54/363 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R+VHAQ V  G  + + V N L+ +Y+    + +A A+F  M+ RD VSW+ ++ G    
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLN 280

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              +   + F +      +L   T   VI+ C + K + + R +H  VLK G   D  V 
Sbjct: 281 EHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM 340

Query: 197 AALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA---------------------- 233
            A++D Y+KC  +DDA  +F  MP ++++V+WT MIG                       
Sbjct: 341 TAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNV 400

Query: 234 --NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDR 265
             N+F    +L                          GTA++  Y+K G+ + A  IF  
Sbjct: 401 KPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKM 460

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-SHTGLVEE 324
           +  K+V++WSAM++ Y   G    A ++F  M    + PN  T  S + AC S T  +++
Sbjct: 461 IDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQ 520

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           G R F ++   +  +  +   + +V +  R G +D A +++     ++D   W +++   
Sbjct: 521 G-RQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA-RIVFERQTDRDLVSWNSMISGY 578

Query: 385 RIH 387
             H
Sbjct: 579 AQH 581



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 157/380 (41%), Gaps = 64/380 (16%)

Query: 76  IRQVHAQIVAGG--TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS-----V 128
           +R  HA  V G    L+ L  A +L    A       A    +GM  RD+ + S      
Sbjct: 11  LRGKHAAAVFGSLKPLSALASAARLEDDCADTCNAPGARQALDGMPSRDAAAGSSSNPVA 70

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +V    +        + F +  RCG ++    +  V++ C    D V G  +H + +K G
Sbjct: 71  IVDYGRRGKGRGEALDHFVDVHRCG-RVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCG 129

Query: 189 LDIDQF-VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------- 233
            D  +  V  ALVDMY KC  ++D R +F+ MP R++VTWT ++                
Sbjct: 130 FDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALF 189

Query: 234 ----------NKFLLDVILG------------------------------TAVIDMYAKC 253
                     N F    +L                                ++I+MY+KC
Sbjct: 190 FRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKC 249

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G ++ A+ +F +M  ++++SW+ ++A    +    +AL LF    +S    ++ T+ +++
Sbjct: 250 GLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVI 309

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
             C++   +    +L S +        D    T ++D   + G LD+A  +   M   ++
Sbjct: 310 KLCANLKQLALARQLHSCVL-KHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQN 368

Query: 374 EGLWGALLGACRIHKNVDLA 393
              W A++G C  + ++ LA
Sbjct: 369 VVSWTAMIGGCIQNADIPLA 388



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 129/276 (46%), Gaps = 27/276 (9%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           V   L+ +Y     + D   +F GM +R+ V+W+ ++ G+ +     +    F      G
Sbjct: 137 VGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG 196

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           +  + +T   V+ A   +  + +GR +H   +K G     FVC +L++MY+KC ++++A+
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAK 256

Query: 214 QLFDQMPTRDLVTWTVMIGA---NKFLLDVI----------------LGTAVIDMYAKCG 254
            +F QM TRD+V+W  ++     N+  L+ +                  + VI + A   
Sbjct: 257 AVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLK 316

Query: 255 SIDSAREIFDRMRQKNVIS----WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            +  AR++   + +    S     +A++ AY   G+   A ++F +M  S+   N +++ 
Sbjct: 317 QLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQ---NVVSWT 373

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           +++  C     +     LFS M +D  V+P+   Y+
Sbjct: 374 AMIGGCIQNADIPLAAALFSRMRED-NVKPNEFTYS 408


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/455 (40%), Positives = 269/455 (59%), Gaps = 47/455 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N +L  YA    L +A A+F+ M ++D+VSW+ M+  +S+        + F E  
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMG 375

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           RCG  ++      V+  C D   +  G  +H  ++++G  +  FV               
Sbjct: 376 RCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV--------------- 420

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
                                           G A++ MY KCG+++ AR  F+ M +++
Sbjct: 421 --------------------------------GNALLAMYFKCGNMEDARNAFEEMEERD 448

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           V+SW+ MIA Y  HG GK+AL++F MM ++   P+ IT V +L ACSH+GLVE+G+  F 
Sbjct: 449 VVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFY 508

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
           SM  DF V    +HYTCM+DLLGRAGRL EA  L++ M  E D  +WGALLGA RIH+N 
Sbjct: 509 SMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNP 568

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +L   AA+ + E +P+N G YVLLSN+YA++G+W+D  K+R +M  R +KK+PG++WIEV
Sbjct: 569 ELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEV 628

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
           +NK+H FS GD  HP+ E+IY  L  L  +++ AGY+  T+  LHDV+EE K   L  HS
Sbjct: 629 QNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHS 688

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIK 545
           EKLA+A+G++  P G  IR++KNLRVCGDCH+  K
Sbjct: 689 EKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 118/248 (47%), Gaps = 23/248 (9%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +L  Y  +  + +A  LFN   E D +SW+ ++ G+ +        E F      G  
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP--GRD 223

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           + S+ +  ++     R D+V  R + D         D F   A+V  YA+  ++++AR++
Sbjct: 224 VVSWNI--MVSGYARRGDMVEARRLFDAAPVR----DVFTWTAVVSGYAQNGMLEEARRV 277

Query: 216 FDQMPTRDLVTWTVMIGA--NKFLLD-------------VILGTAVIDMYAKCGSIDSAR 260
           FD MP R+ V+W  M+ A   + ++D             V     ++  YA+ G ++ A+
Sbjct: 278 FDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAK 337

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M QK+ +SW+AM+AAY   G  ++ L LF  M       NR  F  +L  C+   
Sbjct: 338 AVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIA 397

Query: 321 LVEEGLRL 328
            +E G++L
Sbjct: 398 ALECGMQL 405



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 142/333 (42%), Gaps = 54/333 (16%)

Query: 92  LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
           +I +NK +  +     + DA  LF  M  R + +++ M+ G+S           FR   R
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
                D+Y+   ++ A      +   R + D +       D      ++  +A   ++  
Sbjct: 98  P----DNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMISSHANHGLVSL 149

Query: 212 ARQLFDQMPTRDLVTWTVMIGA---------------NKFLLDVILGTAVIDMYAKCGSI 256
           AR  FD  P +D V+W  M+ A               ++   DVI   A++  Y + G +
Sbjct: 150 ARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKM 209

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             ARE+FDRM  ++V+SW+ M++ Y   G   +A  LF     +  + +  T+ +++   
Sbjct: 210 SEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVVSGY 265

Query: 317 SHTGLVEEGLRLFSSM-------WDD-----------------FAVRP--DVKHYTCMVD 350
           +  G++EE  R+F +M       W+                  F + P  +V  +  M+ 
Sbjct: 266 AQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLT 325

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
              +AG L+EA  + ++M  +KD   W A+L A
Sbjct: 326 GYAQAGMLEEAKAVFDTMP-QKDAVSWAAMLAA 357



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 31/241 (12%)

Query: 58  VDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           V+   F   L +C +I  +    Q+H +++  G      V N LL +Y     + DA   
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 440

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F  M+ERD VSW+ M+ G+++        E F        + D  TL  V+ AC     +
Sbjct: 441 FEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLV 500

Query: 175 VMG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWT 228
             G      + HD  + +    + + C  ++D+  +   + +A  L   MP   D   W 
Sbjct: 501 EKGISYFYSMHHDFGVTA--KPEHYTC--MIDLLGRAGRLAEAHDLMKDMPFEPDSTMWG 556

Query: 229 VMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKN 270
            ++GA++   +  LG +  +                  +YA  G    AR++   M ++ 
Sbjct: 557 ALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERG 616

Query: 271 V 271
           V
Sbjct: 617 V 617



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 44/231 (19%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           +VI     I  + + G +  A  +F  M +++  +++AM+A Y  +G+   A  LF  + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-------------------------- 332
                P+  ++ +LL+A + +  + +   LF  M                          
Sbjct: 97  R----PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARH 152

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
           + D A   D   +  M+    R GR++EA  L  S + E D   W AL+        V  
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT-EWDVISWNALMSGY-----VQW 206

Query: 393 AEMA-AKSLLERQP-QNPGHYVLLSNVYANAG------RWQDVAKIRDLMT 435
            +M+ A+ L +R P ++   + ++ + YA  G      R  D A +RD+ T
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/503 (39%), Positives = 285/503 (56%), Gaps = 33/503 (6%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  +V     +N  V N L+ +YA    + +AH +F  +  RD VSW+ ++ G      
Sbjct: 388 VHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGL 447

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
               F+  RE     MQL S           D   +   R + + +              
Sbjct: 448 ISEAFQLVRE-----MQLPSSAASGETMLEGDDTSVDGQRCMPNNI-------------T 489

Query: 199 LVDMYAKCKVIDDARQLFDQMPTR--DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
           L+ +   C V+          P R  ++  + V    +    D+ +G+A++DMYAKCG +
Sbjct: 490 LMTLLPGCAVL--------AAPARGKEIHGYAVR---HALESDLAVGSALVDMYAKCGCL 538

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYA 315
             AR +FDR+ ++NVI+W+ +I AYG HG G +AL LF  M+++    PN +TF++ L A
Sbjct: 539 ALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAA 598

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-EKDE 374
           CSH+GLV+ GL LF  M  D+   P    + C+VD+LGRAGRLDEA  +I SM+  E   
Sbjct: 599 CSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQV 658

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
             W  +LGACR+H+NV L  +AA+ L E +P    HYVLL N+Y+ AG W++  ++R +M
Sbjct: 659 SAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMM 718

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
            +R + K PG +WIE++  IH+F  G+S HP+S +++  +  L E++   GY+PDT+  L
Sbjct: 719 RQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVL 778

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HDVDE  K   L  HSEKLAIAFGL+  P G  IR+ KNLRVC DCH   K +S +  R 
Sbjct: 779 HDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGRE 838

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I++RD  RFHHF  G CSC DYW
Sbjct: 839 IVLRDVRRFHHFRDGTCSCGDYW 861



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 77/334 (23%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI--VMGR 178
           RD+VS++ ++        + +  +  R+ +    ++ S+TL  V+ AC    D    +GR
Sbjct: 116 RDAVSYNSLISALCLFRRWGHALDALRDML-ADHEVSSFTLVSVLLACSHLADQGHRLGR 174

Query: 179 LIHDIVLKSG-LDI--DQFVCAALVDMYAKCKVIDDARQLF--DQMPTRDLVTWTVMIG- 232
             H   LK G LD   ++F   AL+ MYA+  ++DDA++LF        DLVTW  MI  
Sbjct: 175 EAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISL 234

Query: 233 ---------ANKFLLDVI------------------------------------------ 241
                    A + L D++                                          
Sbjct: 235 LVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAA 294

Query: 242 ---LGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYH-GQGKKALDLFP 295
              + +A++DMYA    +  AR +FD + +  + +  W+AMI  Y  H G  ++A++LF 
Sbjct: 295 NSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFS 354

Query: 296 MM-LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH----YTCMVD 350
            M   +   P+  T   +L AC+ + +              + V+ D+         ++D
Sbjct: 355 RMEAEAGCAPSETTMAGVLPACARSEVFTG-----KEAVHGYVVKRDMASNRFVQNALMD 409

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           +  R GR+DEA  +   + + +D   W  L+  C
Sbjct: 410 MYARLGRMDEAHTIFAMIDL-RDIVSWNTLITGC 442



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 90/217 (41%), Gaps = 22/217 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   V     ++L V + L+ +YA    L  A A+F+ +  R+ ++W+V++  +   
Sbjct: 507 KEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMH 566

Query: 137 ADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQF 194
                    F   +  G    +  T    + AC     +  G  L   +    G +   +
Sbjct: 567 GLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPY 626

Query: 195 VCAALVDMYAKCKVIDDARQLFDQM-PTRDLVT-WTVMIGANKFLLDVILG--------- 243
           + A +VD+  +   +D+A  +   M P    V+ W+ M+GA +   +V LG         
Sbjct: 627 LHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFE 686

Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                      + ++Y+  G  +++ E+   MRQ+ V
Sbjct: 687 LEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGV 723



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 28/240 (11%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQ 214
           D + LP  I++    +D    R IH   L+  L       V  AL+  YA+C  +D A  
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 215 LFDQMPT--RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQKNV 271
           LF   P   RD V++  +I A             + ++ + G ++D+ R++       + 
Sbjct: 107 LFAATPPDLRDAVSYNSLISA-------------LCLFRRWGHALDALRDMLADHEVSSF 153

Query: 272 ISWSAMIAAYGYHGQGKK-ALDLFPMMLSSRVLP---NRITFVSLLYACSHTGLVEEGLR 327
              S ++A      QG +   +     L    L     R  F +LL   +  GLV++  R
Sbjct: 154 TLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQR 213

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           LF S         D+  +  M+ LL + GR +EA++++  M    V  D   + + L AC
Sbjct: 214 LFFSSGAGVG---DLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPAC 270


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 309/549 (56%), Gaps = 55/549 (10%)

Query: 76   IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            ++++H   +    + N +VAN  +  YA   +L+ A  +F+G++ +   SW+ ++GG ++
Sbjct: 769  LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 828

Query: 136  VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
              D     +   +    G+  DS+T+  ++ AC   K + +G+ +H  ++++ L+ D FV
Sbjct: 829  SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 888

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG---------------------- 232
              +++ +Y  C  +   + LFD M  + LV+W TV+ G                      
Sbjct: 889  YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 948

Query: 233  -----------------------------ANKFLL--DVILGTAVIDMYAKCGSIDSARE 261
                                         A K LL  D  +  ++IDMYAK GSI  + +
Sbjct: 949  QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 1008

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +F+ +++K+  SW+AMI  YG HG  K+A+ LF  M  +   P+ +TF+ +L AC+H+GL
Sbjct: 1009 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 1068

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGAL 380
            + EGLR    M   F ++P++KHY C++D+LGRAG+LD+AL+++ E MS E D G+W +L
Sbjct: 1069 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 1128

Query: 381  LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
            L +CRIH+N+++ E  A  L E +P+ P +YVLLSN+YA  G+W+DV K+R  M    L+
Sbjct: 1129 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 1188

Query: 441  KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
            K  G +WIE+  K+  F VG+      EEI  +   L  K+   GY PDT    HD+ EE
Sbjct: 1189 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEE 1248

Query: 501  VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
             K+  L  HSEKLA+ +GLI T EGT IR+ KNLR+C DCH+  K +S +  R I+VRD 
Sbjct: 1249 EKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 1308

Query: 561  NRFHHFEGG 569
             RFHHF+ G
Sbjct: 1309 KRFHHFKNG 1317



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 68/377 (18%)

Query: 71  RNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           ++I   R++H Q+V+G T    + ++  +++ +YA+  +  D+  +F+ ++ ++   W+ 
Sbjct: 453 KDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNA 511

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           ++  +S+   +    ETF E I     L D +T P VI+AC    D+ +G  +H +V+K+
Sbjct: 512 VISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT 571

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------- 231
           GL  D FV  ALV  Y     + DA QLFD MP R+LV+W  MI                
Sbjct: 572 GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLL 631

Query: 232 -------GANKFLLDV-----------------------------------ILGTAVIDM 249
                  G   F+ DV                                   +L  A++DM
Sbjct: 632 GEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM 691

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNRI 307
           Y+KCG I +A+ IF     KNV+SW+ M+  +   G      D+   ML+    V  + +
Sbjct: 692 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 751

Query: 308 TFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           T ++ +  C H   +     L   S+  +F     V +    V    + G L  A ++  
Sbjct: 752 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN--AFVASYAKCGSLSYAQRVFH 809

Query: 367 SMSVEKDEGLWGALLGA 383
            +   K    W AL+G 
Sbjct: 810 GIR-SKTVNSWNALIGG 825



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 158/407 (38%), Gaps = 63/407 (15%)

Query: 71   RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
            R I   + VH   V       L++ N L+ +Y+    +T+A  +F     ++ VSW+ MV
Sbjct: 661  REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 720

Query: 131  GGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
            GGFS   D    F+  R+ +  G  ++ D  T+   +  C     +   + +H   LK  
Sbjct: 721  GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 780

Query: 189  LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN------KFLLDVIL 242
               ++ V  A V  YAKC  +  A+++F  + ++ + +W  +IG +      +  LD  L
Sbjct: 781  FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 840

Query: 243  ----------GTAVIDMYAKCGSIDSAR-------------------------------- 260
                         V  + + C  + S R                                
Sbjct: 841  QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 900

Query: 261  ------EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                   +FD M  K+++SW+ +I  Y  +G   +AL +F  M+   +    I+ + +  
Sbjct: 901  ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 960

Query: 315  ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            ACS    +  G    +       +  D      ++D+  + G + ++ K+   +  EK  
Sbjct: 961  ACSLLPSLRLGREAHAYALKHL-LEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 1018

Query: 375  GLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNVYA 419
              W A++    IH    LA+ A K    ++R   NP     L  + A
Sbjct: 1019 ASWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 1062



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 127/321 (39%), Gaps = 70/321 (21%)

Query: 130 VGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           +  F +  D    F T +EF+           L    L  +++A   RKDI MGR IH +
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 464

Query: 184 VLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDV 240
           V  S  L  D  +C  ++ MYA C   DD+R +FD + +++L  W  +I   +   L D 
Sbjct: 465 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 524

Query: 241 ILGT-----------------------------------------------------AVI 247
           +L T                                                     A++
Sbjct: 525 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALV 584

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR----VL 303
             Y   G +  A ++FD M ++N++SW++MI  +  +G  +++  L   M+        +
Sbjct: 585 SFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFM 644

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           P+  T V++L  C+     E GL      W     +  ++     ++D+  + G +  A 
Sbjct: 645 PDVATLVTVLPVCARE--REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA- 701

Query: 363 KLIESMSVEKDEGLWGALLGA 383
           ++I  M+  K+   W  ++G 
Sbjct: 702 QMIFKMNNNKNVVSWNTMVGG 722


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 310/539 (57%), Gaps = 52/539 (9%)

Query: 60  PKFFISSLL--SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           P  F+ S L  +C N+  I+   QVH   +      + +V + L+ +YA  + L  A A+
Sbjct: 40  PDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAV 99

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFRE---------------FIRCGMQLDSY 159
           F+ ++ ++++SW+ MV G++K        E FR                F++ G  L+++
Sbjct: 100 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAF 159

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           ++   +R  R+R DI                +D  V +++V   A        RQ+    
Sbjct: 160 SVFTEMR--RERVDI----------------LDPLVLSSIVGACANLAASIAGRQVHG-- 199

Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                     ++ A  F   V +  A+IDMYAKC  + +A++IF RMR ++V+SW+++I 
Sbjct: 200 ----------LVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIV 249

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
               HGQ +KAL L+  M+S  V PN +TFV L+YACSH G V +G  LF SM  D+ +R
Sbjct: 250 GMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIR 309

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
           P ++HYTC++DLLGR+G LDEA  LI +M    DE  W ALL AC+      +    A  
Sbjct: 310 PSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIADH 369

Query: 400 LLER-QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
           L+   +P++P  Y+LLSN+YA+A  W  V++ R  +    ++K PG++ +EV  +   F 
Sbjct: 370 LVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFY 429

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
            G+++H   E+I+R+L  L E++ +  GY+PDT++ LHD+DE+ K   L+ HSE+ A+A+
Sbjct: 430 AGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAY 489

Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           GL+    GT IRI+KNLRVCGDCH  +KH+S IT R IIVRDA R+HHF+GG CSC D+
Sbjct: 490 GLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 548



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 103/203 (50%), Gaps = 18/203 (8%)

Query: 118 MKERDSVSWSVMVGGFSKVA-DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           M  RD ++W+ ++   ++        +         G++ D +    +++AC +   I +
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           G+ +H   + S    D  V ++LVDMYAKC+++D A+ +FD +  ++ ++WT M+     
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSG--- 117

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                        YAK G  + A E+F R+  KN+ SW+A+I+ +   G+G +A  +F  
Sbjct: 118 -------------YAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTE 164

Query: 297 MLSSRV-LPNRITFVSLLYACSH 318
           M   RV + + +   S++ AC++
Sbjct: 165 MRRERVDILDPLVLSSIVGACAN 187


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/582 (36%), Positives = 318/582 (54%), Gaps = 63/582 (10%)

Query: 58   VDPKF-FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
            V  KF  IS+L SC ++  I   +Q+H + +  G   ++ V+N LL +YA    + +   
Sbjct: 453  VPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQK 512

Query: 114  LFNGMKERDSVSWSVMVGGFSKV-ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F  M E D VSW+  +G  +   A  +   + F E ++ G + +  T   ++ A     
Sbjct: 513  VFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLS 572

Query: 173  DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMI 231
             + +GR IH ++LK  +  D  +   L+  Y KC+ ++D   +F +M   RD V+W  MI
Sbjct: 573  LLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMI 632

Query: 232  GA------------------------NKFLLDVIL------------------------- 242
                                      + F L  +L                         
Sbjct: 633  SGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLE 692

Query: 243  -----GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
                 G+A++DMYAKCG ID A   F+ M  +N+ SW++MI+ Y  HG G KAL LF  M
Sbjct: 693  AEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQM 752

Query: 298  LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
                 LP+ +TFV +L ACSH GLV+EG   F SM + + + P ++H++CMVDLLGRAG 
Sbjct: 753  KQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGD 812

Query: 358  LDEALKLIESMSVEKDEGLWGALLGAC--RIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
            + +  + I++M +  +  +W  +LGAC     +N +L   AAK L+E +P N  +YVLLS
Sbjct: 813  VKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLS 872

Query: 416  NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
            N++A  G+W+DV + R  M    +KK  G +W+ +++ +H F  GD THP+ E+IY  L 
Sbjct: 873  NMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLK 932

Query: 476  TLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
             +  K+   GY+P+T + L+D++ E K   L  HSEKLAIAF L    E   IRI+KNLR
Sbjct: 933  EIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRQSE-LPIRIIKNLR 991

Query: 536  VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            VCGDCH+  K++S I  R II+RD+NRFHHF+GG CSC+DYW
Sbjct: 992  VCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 164/358 (45%), Gaps = 72/358 (20%)

Query: 77  RQVHAQIVAGGTL-TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF-- 133
           ++VHA ++    +   +++ N L+ +YA   A+ +A ++F  M  +D+VSW+ ++ G   
Sbjct: 374 QEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDH 433

Query: 134 -SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
             +  + + CF T R   R GM    +++   + +C     I++G+ IH   +K GLD+D
Sbjct: 434 NERFEEAVACFHTMR---RNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLD 490

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-----------ANKFLLD-- 239
             V  AL+ +YA+   +++ +++F  MP  D V+W   IG           A K+ L+  
Sbjct: 491 VSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMM 550

Query: 240 --------------------------------VILGTAVID----------MYAKCGSID 257
                                           +IL  +V D           Y KC  ++
Sbjct: 551 QAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQME 610

Query: 258 SAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
               IF RM + ++ +SW+AMI+ Y ++G   KA+ L  +M+      +  T  ++L AC
Sbjct: 611 DCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSAC 670

Query: 317 SHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           +    +E G+ + +      A+R     +V   + +VD+  + G++D A +  E M V
Sbjct: 671 ASVATLERGMEVHAC-----AIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPV 723



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 169/372 (45%), Gaps = 69/372 (18%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYA-LHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++H  I      ++++++N L+ +Y+    ++ DA  +F  +K + S SW+ ++  + + 
Sbjct: 163 EIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRR 222

Query: 137 ADFINCFETFREFIRCGMQLD----SYTL-PFVIRACR--DRKDIVMGRLIHDIVLKSGL 189
            D I+ F+ F    R   +L+     YT    V  AC   D    ++ +++  I  KS  
Sbjct: 223 GDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIE-KSSF 281

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--------------------------- 222
             D +V +ALV  +A+  +ID A+ +F+QM  R                           
Sbjct: 282 VKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKE 341

Query: 223 --DLV-----TWTVMIGA----------------------NKFLLDV--ILGTAVIDMYA 251
             DLV     ++ V++ A                         L+DV  ++G A++++YA
Sbjct: 342 MKDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYA 401

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KC +ID+AR IF  M  K+ +SW+++I+   ++ + ++A+  F  M  + ++P++ + +S
Sbjct: 402 KCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVIS 461

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
            L +C+  G +  G ++         +  DV     ++ L      ++E  K+   M  E
Sbjct: 462 TLSSCASLGWIMLGQQIHGE-GIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP-E 519

Query: 372 KDEGLWGALLGA 383
            D+  W + +GA
Sbjct: 520 YDQVSWNSFIGA 531



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 139/325 (42%), Gaps = 53/325 (16%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H QI   G  +++   N L+ I+     L  A  LF+ M +++ VSWS +V G+++  
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD--IVMGRLIHDIVLKSGLDIDQFV 195
                   FR  I  G+  + Y +   +RAC++     + +G  IH ++ KS    D  +
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 196 CAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
              L+ MY+ C   IDDAR++F+++  +   +W                 ++I +Y + G
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASW----------------NSIISVYCRRG 223

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL- 313
              SA ++F  M+                    ++A +L          PN  TF SL+ 
Sbjct: 224 DAISAFKLFSSMQ--------------------REATEL-------NCRPNEYTFCSLVT 256

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY---TCMVDLLGRAGRLDEALKLIESMSV 370
            ACS   LV+ GL L   M         VK     + +V    R G +D A  + E M  
Sbjct: 257 VACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDD 313

Query: 371 EKDEGLWGALLGACRIHKNVDLAEM 395
                + G ++G  R H+  + A++
Sbjct: 314 RNAVTMNGLMVGLARQHQGEEAAKI 338



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 12/118 (10%)

Query: 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
           Y     ++DA QL  Q+    L +            DV     +++++ + G++ SA+++
Sbjct: 49  YRDSCTVEDAHQLHLQIYKTGLTS------------DVFWCNTLVNIFVRAGNLVSAQKL 96

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           FD M QKN++SWS +++ Y  +G   +A  LF  ++S+ +LPN     S L AC   G
Sbjct: 97  FDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELG 154



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 46/222 (20%)

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
           RD   +     +H  + K+GL  D F C  LV+++ +   +  A++LFD+MP ++LV+W+
Sbjct: 50  RDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWS 109

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
            ++                  YA+ G  D A  +F     + +IS   +   Y      +
Sbjct: 110 CLVSG----------------YAQNGMPDEACMLF-----RGIISAGLLPNHYAIGSALR 148

Query: 289 KALDLFPMML----------------SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
              +L P ML                S  VL N    +S+   CS +  +++  R+F   
Sbjct: 149 ACQELGPNMLKLGMEIHGLISKSPYASDMVLSN--VLMSMYSHCSAS--IDDARRVF--- 201

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
            ++  ++     +  ++ +  R G    A KL  SM  E  E
Sbjct: 202 -EEIKMKTSAS-WNSIISVYCRRGDAISAFKLFSSMQREATE 241


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 308/557 (55%), Gaps = 60/557 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMKERDSVSWSVMVGGFSK 135
           Q H QI   G +    V   L+ +Y     + +A  +F  N    + +V ++ +V G+  
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 120

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
            +   +    FR+    G+ ++S TL  +I AC    ++ +G  +H   LK G D D  V
Sbjct: 121 NSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 180

Query: 196 ----------CA---------------------ALVDMYAKCKVIDDARQLFDQMPTR-- 222
                     C                      A+V  YA+  +  +  +L+  M     
Sbjct: 181 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 240

Query: 223 --DLVTWTVMIG-------------------ANKFLLDVILGTAVIDMYAKCGSIDSARE 261
             D VT   ++                    A+ F  +  L  A+I+MYA+CG++  A+ 
Sbjct: 241 HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQA 300

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M ++ ++SW+A+I  YG HG G+ A+ LF  M+ S + P+   FV +L ACSH GL
Sbjct: 301 VFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGL 360

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            ++GL  F  M  ++ + P  +HY+CMVDLLGRAGRL EA  LIESM ++ D  +WGALL
Sbjct: 361 TDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALL 420

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC+IHKNV+LAE+A + ++E +P+N G+YVLLSN+Y+NA   + V +IR +M  ++LKK
Sbjct: 421 GACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKK 480

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE-KLELAGYIPDTNFELHDVDEE 500
            PG +++E++ ++H F VGD  H QS+EIYR+L  L    ++  G     N E  + D  
Sbjct: 481 DPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESNKDGF 540

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            +VG    HSEKLA+AFGL+ T  G  + I+KNLR+C DCH F K VS I  R + VRDA
Sbjct: 541 TRVG---VHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDA 597

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF  G+CSC+DYW
Sbjct: 598 TRFHHFRNGSCSCKDYW 614



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 149/336 (44%), Gaps = 60/336 (17%)

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           S  W+  +   +K   F+     + + +R G + +++T PF +++C      ++G   H 
Sbjct: 5   STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 64

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ-MPTRDL----------------- 224
            + K G   + FV   L+ MY K  ++D+AR++F++   +R L                 
Sbjct: 65  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 124

Query: 225 -------------------VTWTVMIGANKFLLDVILGTAV------------------- 246
                              VT   +I A    +++ LG+++                   
Sbjct: 125 SDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCF 184

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           I MY KCGS++ A+++FD M  K +ISW+AM++ Y  +G     L+L+  M  + V P+ 
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDP 244

Query: 307 ITFVSLLYACSHTGLVEEGLRL-FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
           +T V +L +C++ G    G  + F      F   P + +   ++++  R G L +A  + 
Sbjct: 245 VTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKAQAVF 302

Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           + M  E+    W A++G   +H + ++A    K ++
Sbjct: 303 DGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 337


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 319/584 (54%), Gaps = 66/584 (11%)

Query: 58   VDPKFF--ISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
            + P  F  ISSL SC  +  +   +QVH   V  G   +  V+N L+ +Y    A++D  
Sbjct: 477  ISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYW 536

Query: 113  ALFNGMKERDSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQLDSYTLPFVIRACRDR 171
             +FN M E D VSW+ M+G  +     I+   + F   +R G+  +  T   ++ A    
Sbjct: 537  KVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPL 596

Query: 172  KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--------- 222
              + +G+ +H  V+K G+  D  V  AL+  YAK   +     LF  M  R         
Sbjct: 597  SVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSM 656

Query: 223  ---------------------------DLVTWTVMIGA-------------------NKF 236
                                       D  T+++++ A                   +  
Sbjct: 657  ISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHL 716

Query: 237  LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
              DV++ +A++DMY+KCG +D A ++F+ M Q+N  SW++MI+ Y  HG G+KA+++F  
Sbjct: 717  ESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEE 776

Query: 297  MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
            ML SR  P+ +TFVS+L ACSH GLVE GL  F  M  D  + P ++HY+C++DLLGRAG
Sbjct: 777  MLRSRESPDHVTFVSVLSACSHAGLVERGLEYFE-MMPDHGILPQIEHYSCVIDLLGRAG 835

Query: 357  RLDEALKLIESMSVEKDEGLWGALLGACRIHK---NVDLAEMAAKSLLERQPQNPGHYVL 413
            ++D+  + I+ M +E +  +W  +L ACR  K   N+DL   A++ LLE +PQNP +YVL
Sbjct: 836  KIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVL 895

Query: 414  LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
             SN +A  G W+D AK R  M +   KK  G +W+ + + +H F  GD +HP ++EIY  
Sbjct: 896  ASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEK 955

Query: 474  LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
            L  L + +  AGY+P T + L+D++EE K   L  HSEKLAIAF L  +  G  IRIMKN
Sbjct: 956  LNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSGP-IRIMKN 1014

Query: 534  LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            LRVCGDCH   +++S +  R II+RD+ RFHHF+ G CSC DYW
Sbjct: 1015 LRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 174/431 (40%), Gaps = 103/431 (23%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
             +H +++  G   +L + N L+  YA    L  A  +F+ M ER++VSW+ +V G+   
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 137 ADFINCFETFREFIR---CGMQLDSYTLPFVIRACRDRKDIVMGRL--IHDIVLKSGLDI 191
                 F  FR  +R    G +  S+T   ++RAC+D     +G    +H +V K+    
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 192 DQFVCAALVDMYAKCKVIDD--ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249
           +  VC AL+ MY  C V     A+++FD  P RDL+TW                 A++ +
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITW----------------NALMSV 244

Query: 250 YAKCGSIDSAREIFDRMRQKN-------------------------------VISW---- 274
           YAK G + S   +F  M++ +                               V+ W    
Sbjct: 245 YAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKS 304

Query: 275 ---------SAMIAAYGYHGQGKKALDLF----------------------------PMM 297
                    SA+++A+  HG   +A D+F                             + 
Sbjct: 305 GCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIF 364

Query: 298 LSSR--VLPNRITFVSLLYACSHTGLVEEGLRL----FSSMWDDFAVRPDVKHYTCMVDL 351
           + +R  V  N  T+V LL A +   + EEGLR+       M         +     +V++
Sbjct: 365 VGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNM 424

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
             + G ++ A K+ + M    D   W  ++ A   + N + A M   SL+ +   +P ++
Sbjct: 425 YAKCGAIESASKIFQLMEA-TDRISWNTIISALDQNGNCEEAVM-HYSLMRQSCISPSNF 482

Query: 412 VLLSNVYANAG 422
            L+S++ + AG
Sbjct: 483 ALISSLSSCAG 493



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/322 (21%), Positives = 134/322 (41%), Gaps = 56/322 (17%)

Query: 77  RQVHAQIVAGGTLTNLIVA--NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           R VH  ++  G LT+L +A  N L+ +YA   A+  A  +F  M+  D +SW+ ++    
Sbjct: 399 RVVHGHMLRTG-LTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALD 457

Query: 135 KVADFINCFETFREFI---RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           +     NC E    +    +  +   ++ L   + +C   K +  G+ +H   +K GLD+
Sbjct: 458 QNG---NCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDL 514

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           D  V   LV MY +C  + D  ++F+ M   D V+W  M+G                M +
Sbjct: 515 DTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGV---------------MAS 559

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
               I    ++F+ M +  +I                               PN++TF++
Sbjct: 560 SQTPISEIVKVFNNMMRGGLI-------------------------------PNKVTFIN 588

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           LL A S   ++E G ++ +++     +  +V     ++    ++G +     L  +MS  
Sbjct: 589 LLAALSPLSVLELGKQVHAAVMKHGVMEDNVVD-NALISCYAKSGDMGSCEHLFTNMSDR 647

Query: 372 KDEGLWGALLGACRIHKNVDLA 393
           +D   W +++     + N+  A
Sbjct: 648 RDAISWNSMISGYIYNGNLQEA 669


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/479 (39%), Positives = 279/479 (58%), Gaps = 58/479 (12%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDA 212
           + +T PFV++AC    ++ +G+ +H  V+K G   +  V   LV MY  C+     I+ A
Sbjct: 9   NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFA 68

Query: 213 RQLFDQMPTRDLVTWTVMIGA-----------NKF-----------------LLDVILGT 244
           R++FD+M   D V+W+ MIG            N F                 +L    G 
Sbjct: 69  RKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128

Query: 245 AVIDM--------------------------YAKCGSIDSAREIFDRMRQKNVISWSAMI 278
             +++                          +AKCG +D A  +F  MR++N++SW+++I
Sbjct: 129 GALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVI 188

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
                HG+G +A+ +F  M+ S V P+ + F+ LL ACSH+GLV++G R F SM  DF++
Sbjct: 189 GGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSI 248

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P ++HY CMVD+L RAG + EALK ++ M ++ +  +W  L+ ACR H  + L E   +
Sbjct: 249 VPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITR 308

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L+  +P +  +YVLLSN+YA    W+   +IR+ M  + +KKIPG T IE++N+I++F 
Sbjct: 309 QLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFV 368

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD +H QS+EIY M+  + ++++ AGY+P T   L D+D+E K   L  HSEKLAIAF 
Sbjct: 369 AGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFA 428

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           L+ TP GT IRI+KNLRVC DCHS  K +S I  R I+VRD NRFHHF+ G CSCRD+W
Sbjct: 429 LLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/523 (37%), Positives = 294/523 (56%), Gaps = 54/523 (10%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           HAQI+  G   + I +N L+ +Y+    +  A  LF+ M  R  VSW+ MVG  ++  D 
Sbjct: 70  HAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDS 129

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199
                 F +  + G+    +T+  V+ AC  +  +   + +H   LK+ LD + FV  AL
Sbjct: 130 EKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTAL 189

Query: 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------NK 235
           +D+YAKC ++ DA  +F+ MP R  VTW+ M+                          N+
Sbjct: 190 LDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 249

Query: 236 FLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFDR 265
           F +                              ++ + +++IDMYAKCG I+ A  +F  
Sbjct: 250 FTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSS 309

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           + +KNV+ W+AM++ +  H +  +A+  F  M    + PN IT++S+L ACSH GLVE+G
Sbjct: 310 VEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKG 369

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
            + F  M     V P+V HY+CMVD+LGRAG L EA  LI+ M  +    +WG+LL +CR
Sbjct: 370 RKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCR 429

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           I++N++ AE+AAK L E +P N G++VLLSN+YA   RW++VA+ R+L+   + KK  G 
Sbjct: 430 IYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVARARNLLKESKAKKERGK 489

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           +WIE+++K+H F VG+  HP+  EIY  L  L  +++  GY   T  +LHDV+E  K   
Sbjct: 490 SWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQEL 549

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           L  HSEKLA+ FG++  P G  IRIMKNLR+CGDCHSF+K  S
Sbjct: 550 LRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLAS 592



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 149/335 (44%), Gaps = 65/335 (19%)

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           L  ++++    +  + G   H  +++ GL  D      L++MY+KC +++ AR+LFD+MP
Sbjct: 50  LQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMP 109

Query: 221 TRDLVTWTVMIGAN---------------------------------------------- 234
            R LV+W  M+G++                                              
Sbjct: 110 VRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQ 169

Query: 235 ------KFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                 K  LD  V +GTA++D+YAKCG +  A  +F+ M +++ ++WS+M+A Y  +  
Sbjct: 170 LHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNEL 229

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
            ++AL LF    +  +  N+ T  S L AC+    + EG ++ + +     +  ++   +
Sbjct: 230 YEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKT-GIGSNIFVIS 288

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            ++D+  + G ++EA  +  S+  EK+  LW A+L     H    +  + A    E+  Q
Sbjct: 289 SLIDMYAKCGIIEEAYIVFSSVE-EKNVVLWNAMLSGFSRH----VRSLEAMIYFEKMQQ 343

Query: 407 -----NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
                N   Y+ +    ++ G  +   K  DLM R
Sbjct: 344 MGICPNEITYISVLTACSHLGLVEKGRKYFDLMIR 378


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 309/565 (54%), Gaps = 63/565 (11%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGG 132
           +RQ+H  +V  G      V N +L  Y+    L +A  +F  M E   RD VSW+ M+  
Sbjct: 158 VRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVA 217

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
             +  + +   E FRE +R G+++D +T+  V+ A    KD+V G   H +++KSG   +
Sbjct: 218 CGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGN 277

Query: 193 QFVCAALVDMYAKCK-VIDDARQLFDQMPTRDLVTWTVMIGA------------------ 233
             V + L+D+Y+KC   + + R++F+++   DLV W  MI                    
Sbjct: 278 SHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREM 337

Query: 234 --NKFLLDVILGTAVIDMYAKCGSIDSAREI----------FDRMRQKNVI--------- 272
             N F  D      V    +   S    +++          ++R+   N +         
Sbjct: 338 QHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGN 397

Query: 273 -----------------SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
                            S ++MIA Y  HG   ++L LF +ML   + PN ITF+++L A
Sbjct: 398 VHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSA 457

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C HTG VEEG + F+ M + F + P+ +HY+CM+DLLGRAG+L EA ++IE+M       
Sbjct: 458 CVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSI 517

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
            W  LLGACR H NV+LA  AA   L+ +P N   YV+LSN+YA+A RW++ A ++ LM 
Sbjct: 518 EWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMR 577

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL- 494
            R +KK PG +WIE++ K+H F   D++HP  +EI+  +  +  K++ AGY+PD  + L 
Sbjct: 578 ERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALV 637

Query: 495 --HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
              +V+ + K   L  HSEKLA+AFGLI+T E   I ++KNLR+CGDCH+ IK +SAIT 
Sbjct: 638 KDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITG 697

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I VRD +RFH F+ G CSC DYW
Sbjct: 698 REITVRDTHRFHCFKEGHCSCGDYW 722



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 115/244 (47%), Gaps = 27/244 (11%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           ++C   L   T   +++AC  ++D++ G+ +H +  KS +    ++      +Y+KC  +
Sbjct: 1   MQCTFPLQLQTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSL 60

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
            +A+  FD     ++ ++  +I A                YAK   I  AR++FD + Q 
Sbjct: 61  HNAQTSFDLTQYPNVFSYNTLINA----------------YAKHSLIHLARQVFDEIPQP 104

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-HTGLVEEGLRL 328
           +++S++ +IAAY   G+ + AL LF  +   R   +  T   ++ AC    GLV + L  
Sbjct: 105 DIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQ-LHC 163

Query: 329 FSSM--WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV--EKDEGLWGALLGAC 384
           F  +  +D +A   +      ++    R G L+EA ++   M     +DE  W A++ AC
Sbjct: 164 FVVVCGYDCYASVNNA-----VLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVAC 218

Query: 385 RIHK 388
             H+
Sbjct: 219 GQHR 222



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 141/342 (41%), Gaps = 71/342 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N L+  YA H  +  A  +F+ + + D VS++ ++  ++   +       F E  
Sbjct: 74  NVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVR 133

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
                LD +TL  VI AC D  D+ + R +H  V+  G D    V  A++  Y++   ++
Sbjct: 134 ELRFGLDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLN 191

Query: 211 DARQLFDQMPT---RDLVTWTVMIGA------------------------NKFLLDVILG 243
           +AR++F +M     RD V+W  MI A                        + F +  +L 
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLT 251

Query: 244 --TAVIDM----------------------------YAKC-GSIDSAREIFDRMRQKNVI 272
             T V D+                            Y+KC G +   R++F+ +   +++
Sbjct: 252 AFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLV 311

Query: 273 SWSAMIAAYG-YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            W+ MI+ +  Y    +  +  F  M  +   P+  +FV +  ACS+      G ++ + 
Sbjct: 312 LWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHA- 370

Query: 332 MWDDFAVRPDVKH-----YTCMVDLLGRAGRLDEALKLIESM 368
                A++ D+ +        +V +  + G + +A ++ ++M
Sbjct: 371 ----LAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTM 408


>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
 gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
          Length = 646

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/544 (38%), Positives = 304/544 (55%), Gaps = 69/544 (12%)

Query: 99  LYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF-IRCGMQLD 157
           L +  L + L D   L +        +++ ++ G +       CF  FR   +  G++ D
Sbjct: 107 LRLLPLARQLLDELPLASTPPATARTAFNSLISGCALHGVPAGCFSLFRRMRVAAGVRFD 166

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV--IDDARQL 215
           + TL  ++        + +   +H +  +SGL  +  V   LV +YA+        ARQ+
Sbjct: 167 AVTLLALVPV----APLGIVPQLHALAARSGLAANTSVANCLVSVYARGGGGGASLARQV 222

Query: 216 FDQMP--TRDLVTWTVMIGAN--------------------------------------- 234
           F++MP  +RDLV+W  +I A+                                       
Sbjct: 223 FEEMPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCA 282

Query: 235 ------------KFLLDVILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                       +++ D I G         A+I+ +A+CGS+  A+E+FD M +++V+SW
Sbjct: 283 HTGARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSW 342

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           + +I  YG HGQG  A+DLF  M+S    P+ +  V LL ACSH G+ +EG + FS+M  
Sbjct: 343 TTLIIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMER 402

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ +RP ++HYTCMVDLLGRAGRLDEA +LI SM +  D  +WGALLGAC+IHKNV++ E
Sbjct: 403 DYCLRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGE 462

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
            A + ++  +P N G+YVL++N+YA+AG+   VAK+R  M RR L+K PG +++E + K+
Sbjct: 463 EAFERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKV 522

Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
           H F   D +HPQ+  IY ++V L   + E  G           V E   V  +  HSEKL
Sbjct: 523 HLFMADDHSHPQARRIYELVVELERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKL 582

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           A+AFGL+ T  G+ I ++KNLRVCGDCHSF+K +S +T R  +VRDA+RFH FE GACSC
Sbjct: 583 AVAFGLLNTEAGSEIVVIKNLRVCGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSC 642

Query: 574 RDYW 577
           RDYW
Sbjct: 643 RDYW 646


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/594 (35%), Positives = 325/594 (54%), Gaps = 75/594 (12%)

Query: 44  VPMQMGPDCQFTRSVDPKF-----FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98
           VP ++     F    DP +     FI SL+S R +                +++ V N  
Sbjct: 204 VPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVM---------------ESDVRVMNSA 248

Query: 99  LYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS 158
           + ++     L DA  LF  M +RD V+W++++  + +  +F      F    + G++ + 
Sbjct: 249 MNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKAND 308

Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV--------ID 210
            T   ++        +  G++IH++V ++G D D  V  AL+ +Y +C+         +D
Sbjct: 309 ITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVD 368

Query: 211 -----------------------DARQLFDQM------PTRDLVTWTVMIGA-------- 233
                                  +A QLF +M      PT   +   +   A        
Sbjct: 369 MGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKG 428

Query: 234 ---------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                    N F +++++ TA+I+MY KCG +  AR +F++M +++++ W++M+ AY  H
Sbjct: 429 RQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQH 488

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G   + L LF  M       + ++FVS+L A SH+G V +G + F +M  DF++ P  + 
Sbjct: 489 GYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPEL 548

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLER 403
           Y C+VDLLGRAGR+ EA+ ++  +S    +G LW  LLGACR H   D A+ AA+ +LER
Sbjct: 549 YGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLER 608

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
            P + G YV+LSNVYA AG W  V ++R LM  R +KK PG + IE+ N++H+F  GD +
Sbjct: 609 DPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRS 668

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HP+   IY  L  L+ ++  AGYIPDT   LHDV++E K   L+ HSE+LAIAFGL++TP
Sbjct: 669 HPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTP 728

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            GT +R++KNLRVC DCH+  K++S +  R I+VRD +RFH+F+ G CSC+DYW
Sbjct: 729 PGTPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 157/379 (41%), Gaps = 59/379 (15%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D  FF++ L  C   +N+   R+VH  +   G   N +V   L+ +YA   ++ +A  +F
Sbjct: 4   DTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVF 63

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
             ++ +D  +W+ M+G + +  D+      F +     +     T   ++ AC   + + 
Sbjct: 64  EILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLK 123

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
            G  IH  +L+ G + D FV  AL++MY KC  +  A   F ++  RD+V+WT MI A  
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 183

Query: 234 ----------------------NKFLL------------------------------DVI 241
                                 NK  L                              DV 
Sbjct: 184 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVR 243

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  + ++M+   G +  AR +F+ M  ++V++W+ +I  Y  +    +A+ LF  +    
Sbjct: 244 VMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDG 303

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +  N ITFV +L   +    + +G ++   +  +     DV   T ++ L GR     +A
Sbjct: 304 IKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQA 362

Query: 362 LKLIESMSVEKDEGLWGAL 380
            K+   M   KD   W  +
Sbjct: 363 WKIFVDMG-SKDVITWTVM 380



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 171/388 (44%), Gaps = 63/388 (16%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           +++ L +C +   ++   ++H QI+  G   ++ V   L+ +Y    ++  A   F  ++
Sbjct: 109 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 168

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            RD VSW+ M+    +   F      +R     G+  +  TL  V  A  D   +  G+ 
Sbjct: 169 HRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKF 228

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
           I+ +V    ++ D  V  + ++M+    ++ DAR+LF+ M  RD+VTW ++I    ++ +
Sbjct: 229 IYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVI--TFYVQN 286

Query: 240 VILGTAV---------------------IDMYAKCGSIDSAREI--------FDR----- 265
              G AV                     +++Y    S+   + I        +DR     
Sbjct: 287 ENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVA 346

Query: 266 ----------------------MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
                                 M  K+VI+W+ M  AY  +G  K+AL LF  M      
Sbjct: 347 TALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRR 406

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P   T V++L  C+H   +++G ++ S + ++   R ++   T ++++ G+ G++ EA  
Sbjct: 407 PTSATLVAVLDTCAHLAALQKGRQIHSHIIEN-GFRMEMVVETALINMYGKCGKMAEARS 465

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVD 391
           + E M+ ++D  +W ++LGA   H   D
Sbjct: 466 VFEKMA-KRDILVWNSMLGAYAQHGYYD 492


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 300/546 (54%), Gaps = 58/546 (10%)

Query: 88   TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
            ++ N+ V N LL  Y+    L D   LF+ M ERD+VS++V++  ++           FR
Sbjct: 465  SVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFR 524

Query: 148  EFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            E  + G   D   LP+  ++       D+ +G+ IH  ++  GL  +  +  AL+DMY+K
Sbjct: 525  EMQKLG--FDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSK 582

Query: 206  CKVIDDARQLFDQMPTRDLVTWTV------------------------------------ 229
            C ++D A+  F     +  ++WT                                     
Sbjct: 583  CGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSI 642

Query: 230  --------MIGANKFLLDVIL----------GTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                    MIG  + L   ++          G+ ++DMYAKCG +D A   FD M ++N 
Sbjct: 643  IKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNS 702

Query: 272  ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            ISW+A+I+AY ++G+ K A+ +F  ML     P+ +TF+S+L ACSH GL +E ++ F  
Sbjct: 703  ISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL 762

Query: 332  MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
            M   +++ P  +HY C++D LGR G   +  K++  M  + D  +W ++L +CRIH N +
Sbjct: 763  MKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQE 822

Query: 392  LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
            LA +AA  L   +P +   YV+LSN+YA AG+W+D A ++ +M  R ++K  G++W+E++
Sbjct: 823  LARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIK 882

Query: 452  NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
             KI+ F+  D T P  +EI   L  L ++++  GY PD    LH VD E+K+ +L  HSE
Sbjct: 883  QKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSE 942

Query: 512  KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
            +LAIAF L+ TP GT IRIMKNL  C DCH+ IK +S I  R IIVRD+ RFHHF+ G C
Sbjct: 943  RLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVC 1002

Query: 572  SCRDYW 577
            SC DYW
Sbjct: 1003 SCGDYW 1008



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 159/362 (43%), Gaps = 72/362 (19%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +  +H   +  G  T++ V N LL  Y  H  L  A  +F  M ++D+V+++ M+ G SK
Sbjct: 368 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 427

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                   + F    R G       L       R R   V+               + FV
Sbjct: 428 EGLHTQALQLFAAMRRAGYSRHPLHL-LQYSHSRSRSTSVL---------------NVFV 471

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF------------------- 236
             +L+D Y+KC  +DD R+LFD+MP RD V++ V+I A  +                   
Sbjct: 472 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 531

Query: 237 ----------------LLDVILG-------------------TAVIDMYAKCGSIDSARE 261
                           L DV +G                    A+IDMY+KCG +D+A+ 
Sbjct: 532 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKS 591

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            F    +K+ ISW+A+I  Y  +GQ ++AL LF  M  + + P+R TF S++ A S   +
Sbjct: 592 NFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 651

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +  G +L S +      +  V   + +VD+  + G LDEAL+  + M  E++   W A++
Sbjct: 652 IGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVI 709

Query: 382 GA 383
            A
Sbjct: 710 SA 711



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 61/362 (16%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           + SLLS  ++ + R +  Q+       N+   N +L  Y+    L  A  LF     R++
Sbjct: 264 LRSLLSSGHLHRARAMFDQM----PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNA 319

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR--ACRDRKDIVMGRLIH 181
            +W++M+   +      +    FR  +  G+  D  T+  V+    C           +H
Sbjct: 320 TTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS-------LH 372

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANK----- 235
              +K GLD   FVC  L+D Y K  ++  AR++F +M  +D VT+  +M+G +K     
Sbjct: 373 PFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHT 432

Query: 236 --------------------------------FLLDVILGTAVIDMYAKCGSIDSAREIF 263
                                            +L+V +  +++D Y+KC  +D  R +F
Sbjct: 433 QALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLF 492

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM----LSSRVLPNRITFVSLLYACSHT 319
           D M +++ +S++ +IAAY ++      L LF  M       +VLP    + ++L      
Sbjct: 493 DEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP----YATMLSVAGSL 548

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
             V  G ++ + +        D+     ++D+  + G LD A     + S EK    W A
Sbjct: 549 PDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTA 606

Query: 380 LL 381
           L+
Sbjct: 607 LI 608


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/587 (38%), Positives = 324/587 (55%), Gaps = 71/587 (12%)

Query: 58   VDPKFF--ISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
            + P  F  IS L SC   R +   +QVH   V  G   +  V+N L+ +Y    A +++ 
Sbjct: 472  ISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESW 531

Query: 113  ALFNGMKERDSVSWS----VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
             +FN M E D VSW+    VMV   +  A+ +   E F   +R G+  +  T   ++ A 
Sbjct: 532  EIFNSMAEHDIVSWNSIMGVMVSSHAPTAESV---EVFSNMMRSGLTPNKVTFVNLLSAL 588

Query: 169  RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTW 227
                 + +G+ +H +VLK G   D  V  AL+  YAK   +D   QLF  M  R D V+W
Sbjct: 589  SPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSW 648

Query: 228  T--------------------VMIGANKFL------------------------------ 237
                                 +M+ +N+ L                              
Sbjct: 649  NSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIR 708

Query: 238  ----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                 DV++ +A++DMY+KCG ID A ++F+ M QKN  SW++MI+ Y  HG G+KAL++
Sbjct: 709  SQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEI 768

Query: 294  FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
            F  M  +   P+ +TFVS+L ACSH GLV+ GL  F  M +D  + P ++HY+C++DLLG
Sbjct: 769  FEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MMEDHGILPHIEHYSCVIDLLG 827

Query: 354  RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQNPGH 410
            RAG+L +  + I  M ++ +  +W  +L ACR  K+   +DL + A++ LLE +PQNP +
Sbjct: 828  RAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVN 887

Query: 411  YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
            YVL SN YA  GRW+D AK R  M    +KK  G +W+ + + +H F  GD +HP ++EI
Sbjct: 888  YVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEI 947

Query: 471  YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
            Y  L  L +K++ AGY+P T F L+D++EE K   L  HSEKLA+AF L  +     IRI
Sbjct: 948  YEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRI 1007

Query: 531  MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            MKNLRVCGDCH+  +++S I  R II+RD+ RFHHFE G CSC DYW
Sbjct: 1008 MKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 182/412 (44%), Gaps = 84/412 (20%)

Query: 77  RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV----- 130
           R+VH  I+  G +   + ++N L+ +YA   A+  A  +F  +  RD VSW+ ++     
Sbjct: 394 REVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQ 453

Query: 131 GGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
            GF + A    C       +R G +   ++     + +C   + +  G+ +H   +K GL
Sbjct: 454 NGFCEGAMMNYCM------MRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGL 507

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------- 233
           D+D  V  ALV MY  C    ++ ++F+ M   D+V+W  ++G                 
Sbjct: 508 DLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFS 567

Query: 234 ---------NKF----LLDVILGTAVIDM--------------------------YAKCG 254
                    NK     LL  +   +V+++                          YAK G
Sbjct: 568 NMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSG 627

Query: 255 SIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
            +DS  ++F  M  +++ +SW++MI+ Y Y+G  ++ +D   +M+ S  + +  TF  +L
Sbjct: 628 DMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVL 687

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            AC+    +E G+ + +     F +R     DV   + ++D+  + GR+D A K+  SMS
Sbjct: 688 NACASVAALERGMEMHA-----FGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMS 742

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNVYA 419
            +K+E  W +++     H    L E A +    ++R    P H   +S + A
Sbjct: 743 -QKNEFSWNSMISGYARH---GLGEKALEIFEEMQRNGACPDHVTFVSVLSA 790



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 129/301 (42%), Gaps = 39/301 (12%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            ++H ++V  G   +L ++N L+ +YA    L  A  +F+GM ER++VSW+ +V G+   
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 137 ADFINCFETFREFIRCGMQLD---SYTLPFVIRACRDRKD--IVMGRLIHDIVLKSGLDI 191
                 F  F+  +  G +      +T   V+RAC+D     +     +H +V K+    
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 192 DQFVCAALVDMYAKCKV--IDDARQLFDQMPTRDLVTWTVMIG--------ANKFLL--- 238
           +  VC AL+ MY  C V     A+Q+FD  P RDL+TW  ++          + F L   
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 239 -------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS----WSAMIAAY 281
                        +   G+ +        S     ++F R+ +    S     SA+++A+
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAF 315

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG   +A D+F + L  R   N +T   L+         EE + +F    D F V  D
Sbjct: 316 ARHGMLDEAKDIF-INLKER---NAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTD 371

Query: 342 V 342
            
Sbjct: 372 T 372


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/568 (34%), Positives = 302/568 (53%), Gaps = 54/568 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           ISS      + + RQ H  ++  G   +  V N L+ +Y+    + DA  ++N +   D 
Sbjct: 140 ISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDI 199

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           V+++ ++    +        E  R  +   ++ D  T       C   KD+ +G  +H  
Sbjct: 200 VAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGK 259

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------- 233
           +L S ++ D +V +A+++MY KC     AR +FD + +R++V WT ++ +          
Sbjct: 260 MLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEA 319

Query: 234 --------------NKFLLDVIL------------------------------GTAVIDM 249
                         N+F   V+L                              G A+I+M
Sbjct: 320 LNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINM 379

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           YAK G I++A+++F  M  +++I+W+AMI  + +HG GKKAL +F  ML++   PN +TF
Sbjct: 380 YAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTF 439

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
             +L AC H GLV+EG      +   F V+P ++HYTC+V LL + G+L+EA   + +  
Sbjct: 440 TGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAP 499

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
           V+ D   W  LL AC +H+N  L    A+ +LE  P + G Y LLSN+YA   RW  V K
Sbjct: 500 VKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVK 559

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R LM  +++KK PG +WIE+ N  H F+  D+ HP   + Y+ +  L   ++  GY PD
Sbjct: 560 VRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPD 619

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSA 549
               LHDV++E K   L  HSEKLAIA+GL+  P    I ++KNLR+C DCHS ++ +S 
Sbjct: 620 IGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISK 679

Query: 550 ITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +T RVI+VRDANRFHHF  G CSC DYW
Sbjct: 680 VTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 186/413 (45%), Gaps = 69/413 (16%)

Query: 71  RNIFQIRQVHAQIV--AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           +N+   + +H+ ++  +  T  ++I  N L+  YA    ++ AH LF+ M ER+ VSWS 
Sbjct: 43  KNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSA 102

Query: 129 MVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
           ++ G+      +      ++ I  G +  + Y L   I +C DR  +  GR  H ++LK+
Sbjct: 103 LMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKT 162

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------- 233
           G     +V  ALV MY+KC ++ DA  +++++P  D+V +  ++ +              
Sbjct: 163 GFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVL 222

Query: 234 ----------------NKFLL------------------------DVILGTAVIDMYAKC 253
                           N F L                        D  + +A+I+MY KC
Sbjct: 223 RSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKC 282

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G    AR +FD ++ +NV+ W+A++A+   +G  ++AL+LF  M    V  N  T+  LL
Sbjct: 283 GKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLL 342

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMS 369
            AC+       G     S+    + +   KH+      ++++  ++G ++ A K+   M 
Sbjct: 343 NACAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDM- 396

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + +D   W A++     H     A +  + +L  + ++P +YV  + V +  G
Sbjct: 397 MHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAE-EHP-NYVTFTGVLSACG 447


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/534 (39%), Positives = 288/534 (53%), Gaps = 62/534 (11%)

Query: 59  DPKFFISSLLSCRNIFQIR---QVHAQIVAGG--TLTNLIVANKLLYIYALHKALTDAHA 113
           D   F S L +C  +   R   QVHA + A G  T +N I+A  L+ +Y   + L  A  
Sbjct: 209 DEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQ 268

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  ++ ++ + W+ +V G ++        E FR F R G + DS+ L  V+    D   
Sbjct: 269 VFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFAL 328

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
           +  GR +H                        C  I D        PT            
Sbjct: 329 VEQGRQVH------------------------CYGIKD--------PTG----------- 345

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
                DV  G +++DMY KCG  D A  +F  MR  NV+SW+ M+   G HG G++A+ L
Sbjct: 346 ----TDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVAL 401

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M +  V P+ +T+++LL ACSH GLV+E  R FS +  D  VRP  +HY CMVDLLG
Sbjct: 402 FEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLG 461

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           RAG L EA  LI +M +E   G+W  LL ACR+HK+V +   A   LL     NP +YV 
Sbjct: 462 RAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVT 521

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG---DSTHPQSEEI 470
           LSNV A AG W++  K+RD M RR LKK  G +W+EV  ++H F  G   + THPQ+ +I
Sbjct: 522 LSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDI 581

Query: 471 YRMLVTLSEKL-ELAGY-IPDTNFELHDVDEEVKVGNLYSHSEKLAIAF-----GLIATP 523
            R+L  +  ++ E  GY   D  F LHDVDEE +  +L +HSE+LA+       G+    
Sbjct: 582 RRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGG 641

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            G  IR+ KNLRVCGDCH F K +SA+ RR ++VRDANRFH FE G+CSC+DYW
Sbjct: 642 HGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 695



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 131/296 (44%), Gaps = 52/296 (17%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H  I   G  ++ ++ N L+ +Y     L  A  +F GM++R+ VSW+ ++ GF +  
Sbjct: 25  QLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHG 84

Query: 138 DFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           D   C     E +R   +   + YTL   ++AC    D   G  IH + +++G      V
Sbjct: 85  DATGCLRLLGE-MRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVV 143

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
            ++LV +Y+K   I DAR++FD              GA        LG+ +         
Sbjct: 144 ASSLVLVYSKGGRIGDARRVFD--------------GAG-------LGSGI--------- 173

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML--SSRVLPNRITFVSLL 313
                            +W+AM++ Y + G G+ AL +F  M     +  P+  TF SLL
Sbjct: 174 ----------------ATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLL 217

Query: 314 YACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            ACS  G   EG ++ ++M    F+   +      +VD+  +  RL  A+++ E +
Sbjct: 218 KACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERL 273



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 10/151 (6%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF- 294
           F  D +LG  +IDMY KCG +D A E+F  MR +NV+SW+A++  +  HG     L L  
Sbjct: 35  FGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLG 94

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVD 350
            M  +S   PN  T  + L AC   G    G+ +         VR   + +    + +V 
Sbjct: 95  EMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHG-----LCVRAGYQEHDVVASSLVL 149

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +  + GR+ +A ++ +   +      W A++
Sbjct: 150 VYSKGGRIGDARRVFDGAGLGSGIATWNAMV 180


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/503 (39%), Positives = 287/503 (57%), Gaps = 35/503 (6%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  ++  G   N  V N L+ +YA    +  A  +F  ++ RD VSW+ ++ G      
Sbjct: 398 VHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGH 457

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
             + F+  RE  + G   D+ T           +D + G     +V  +   +      A
Sbjct: 458 IHDAFQLVREMQQQGRFTDATT-----------EDGIAGTDEEPVVPNNVTLMTLLPGCA 506

Query: 199 LVDMYAKCKVIDD--ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
           ++   AK K I     R   D                     D+ +G+A++DMYAKCG +
Sbjct: 507 MLAAPAKGKEIHGYAMRHALDS--------------------DIAVGSALVDMYAKCGCL 546

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP-MMLSSRVLPNRITFVSLLYA 315
             +R +FDR+ ++NVI+W+ +I AYG HG G +A+ LF  M++S+   PN +TF++ L A
Sbjct: 547 ALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAA 606

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-EKDE 374
           CSH+G+V+ G+ LF SM  +  V+P    + C VD+LGRAGRLDEA  +I SM   E+  
Sbjct: 607 CSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQV 666

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
             W + LGACR+H+NV L E+AA+ L + +P    HYVLL N+Y+ AG W+  +++R+ M
Sbjct: 667 SAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRM 726

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
            +R + K PG +WIE++  IH+F  G+S HP+S  ++  +  L E++   GY PDT+  L
Sbjct: 727 RQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVL 786

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HD++E  K   L  HSEKLAIAFGL+ TP G  IR+ KNLRVC DCH   K +S +  R 
Sbjct: 787 HDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGRE 846

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I++RD  RFHHF  GACSC DYW
Sbjct: 847 IVLRDVRRFHHFVDGACSCGDYW 869



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 144/327 (44%), Gaps = 58/327 (17%)

Query: 66  SLLSCRNIFQIRQVHAQIVAGGTLTNLI--VANKLLYIYALHKALTDAHALFNGMKERDS 123
           S  + R++  +R +H   +    L      VAN LL  YA    LT A ALFN M  RD+
Sbjct: 68  SAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRDA 127

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHD 182
           V+++ ++        ++   +  R+ +  G  L S+TL  V+ AC    +D+ +GR  H 
Sbjct: 128 VTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHA 187

Query: 183 IVLKSG-LDIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRD-----LVTWTVMIGANK 235
             LK+G LD D+ F   AL+ MYA+  ++DDA+ LF  + T D     +VTW  M+    
Sbjct: 188 FALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMV---- 243

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                    +++    +CG                                  +A+++  
Sbjct: 244 ---------SLLVQSGRCG----------------------------------EAIEVIY 260

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M++  V P+ ITF S L ACS   ++  G  + + +  D  +  +    + +VD+    
Sbjct: 261 DMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASH 320

Query: 356 GRLDEALKLIESM-SVEKDEGLWGALL 381
            R+  A ++ + +    +  GLW A++
Sbjct: 321 ERVGVARRVFDMVPGGHRQLGLWNAMV 347



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 24/239 (10%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDAR 213
           LD + LP   ++    + ++  R IH   L+  L       V  AL+  YA+C  +  A 
Sbjct: 57  LDHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAAL 116

Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK-CGSIDSAREIFDRMRQKNVI 272
            LF+ MP+RD VT+  +I             A + ++ +   ++D+ R++       +  
Sbjct: 117 ALFNAMPSRDAVTFNSLI-------------AALCLFRRWLPALDALRDMLLEGHPLSSF 163

Query: 273 SWSAMIAAYGYHGQ----GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +  +++ A  +  +    G++A   F +         R  F +LL   +  GLV++   L
Sbjct: 164 TLVSVLLACSHLAEDLRLGREA-HAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQML 222

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           F S+    +    V  +  MV LL ++GR  EA+++I  M    V  D   + + L AC
Sbjct: 223 FGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPAC 281



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 91/217 (41%), Gaps = 22/217 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   +     +++ V + L+ +YA    L  + A+F+ + +R+ ++W+V++  +   
Sbjct: 515 KEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMH 574

Query: 137 ADFINCFETF-REFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQF 194
                    F R  +    + +  T    + AC     +  G  L H +    G+     
Sbjct: 575 GLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPD 634

Query: 195 VCAALVDMYAKCKVIDDARQLFDQM-PTRDLVT-WTVMIGANKFLLDVILG--------- 243
           + A  VD+  +   +D+A  +   M P    V+ W+  +GA +   +V LG         
Sbjct: 635 LHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQ 694

Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                      + ++Y+  G  + + E+ +RMRQ+ V
Sbjct: 695 LEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGV 731


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 325/552 (58%), Gaps = 61/552 (11%)

Query: 72  NIFQIRQVHA-QIVAGGTLTNLIVANKLL-YIYALHKA--LTDAHALFNGMKERDSV-SW 126
           +I ++RQ+HA  I  G ++++  +   L+ Y+ +L     ++ AH +F+ +++  +V  W
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88

Query: 127 SVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           + ++ G++++ + I+ F  +RE    G+ + D++T PF+I+A     D+ +G  IH +V+
Sbjct: 89  NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------- 230
           +SG     +V  +L+ +YA C  +  A ++FD+MP +DLV W  +               
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208

Query: 231 --------------------------IGA-------NKFLLDVIL------GTAVIDMYA 251
                                     IGA       + +++ V L         ++D+YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFV 310
           +CG ++ A+ +FD M  KN +SW+++I     +G GK+A++LF  M S+  +LP  ITFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +LYACSH G+V+EG   F  M +++ + P ++H+ CMVDLL RAG++ +A + I+SM +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           + +  +W  LLGAC +H + DLAE A   +L+ +P + G YVLLSN+YA+  RW DV KI
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M R  +KK+PG + +EV N++H+F +GD +HPQS+ IY  L  ++ +L   GY+P  
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQI 508

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +    DV+EE K   +  HSEK+AIAF LI+TPE + I ++KNLRVC DCH  IK VS +
Sbjct: 509 SNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568

Query: 551 TRRVIIVRDANR 562
             R I+VRD +R
Sbjct: 569 YNREIVVRDRSR 580


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/599 (34%), Positives = 315/599 (52%), Gaps = 89/599 (14%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSV 124
           S L +C    +  ++HA +V  G  ++  VA +L   YA    L  +  L    K+  ++
Sbjct: 29  SLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTI 88

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
            ++  +   S     +       + +  G+   ++TL   + ACR    + +GR +H   
Sbjct: 89  FYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRG---LSLGRALHAYA 145

Query: 185 LKSGLDIDQFVCAALVDMY-------------------------------AKCKVIDDAR 213
            K  L  D +V  AL+ MY                               A    +DDAR
Sbjct: 146 FKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDAR 205

Query: 214 QLFDQMPTRDL-----------------------------------VTWTVMIGA----- 233
           +LFD +P +D                                    VT  +++ A     
Sbjct: 206 RLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLG 265

Query: 234 ----NKFL-----------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                K+L           L+V + TA++DMY KCGS++ A  +F  +  K+++ W+AMI
Sbjct: 266 TVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMI 325

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
             Y  HG  +KAL++F  +    + P  ITF+ LL ACSH+GLVEEG   F SM  ++ +
Sbjct: 326 NGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGI 385

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P ++HY CMVDLLGRAG ++EA  L++S+++  D  +W +LL ACR+HKN+ L +  A 
Sbjct: 386 DPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIAD 445

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L+     N G Y+LLSN+YA  G+W++VA++R +M    ++K PG + IE++ K+++F 
Sbjct: 446 FLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFV 505

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD +HP ++EIY ML  ++  ++  G++P T   LHD+DE  K   L  HSEKLA+AFG
Sbjct: 506 AGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFG 565

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI++  G+ I+I+KNLR C DCH+ +K +S IT R I+ RD NRFHHF  G+C+C DYW
Sbjct: 566 LISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/559 (37%), Positives = 304/559 (54%), Gaps = 61/559 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH QI+    + +  V   LL +Y     ++DA  +FN M + D V WS M+  F + 
Sbjct: 267 KGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 137 ADFINCFETFREFIRCGMQL---DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                C E    FIR        + +TL  ++  C   K   +G  +H +V+K G D+D 
Sbjct: 327 G---FCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDI 383

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------------- 231
           +V  AL+D+YAKC+ +D A +LF ++ +++ V+W  +I                      
Sbjct: 384 YVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRN 443

Query: 232 -------------GANKFLLDVILGTAV-------------------IDMYAKCGSIDSA 259
                        GA   L  + LG  V                   IDMYAKCG I  A
Sbjct: 444 QVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFA 503

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
           + +F+ M   +V SW+A+I+ Y  HG G++AL +  +M      PN +TF+ +L  CS+ 
Sbjct: 504 QSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNA 563

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GL+++G   F SM  D  + P ++HYTCMV LLGR+G+LD+A+KLIE +  E    +W A
Sbjct: 564 GLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRA 623

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +L A     N + A  +A+ +L+  P++   YVL+SN+YA A +W +VA IR  M    +
Sbjct: 624 MLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGV 683

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK PG +WIE +  +H FSVG S HP  + I  ML  L+ K   AGY+PD N  L D+D+
Sbjct: 684 KKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDD 743

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEG-THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
           E K   L+ HSE+LA+A+GL+  P     I IMKNLR+C DCHS +K +S+I +R +++R
Sbjct: 744 EEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIR 803

Query: 559 DANRFHHFEGGACSCRDYW 577
           D NRFHHF  G CSC D+W
Sbjct: 804 DMNRFHHFHAGVCSCGDHW 822



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 157/362 (43%), Gaps = 66/362 (18%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H  I+  G+  +L   N LL  Y       DA  LF+ M ER++VS+  +  G++  
Sbjct: 69  KAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA-C 127

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D I  +       R G +L+ +     ++         +   +H  ++K G D + FV 
Sbjct: 128 QDPIGLYSRLH---REGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVG 184

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTW----------------------------- 227
           AAL++ Y+ C  +D AR +F+ +  +D+V W                             
Sbjct: 185 AALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFM 244

Query: 228 ------------TVMIGANKF-------------LLDVILGTAVIDMYAKCGSIDSAREI 262
                       ++ +GA  F             +LD  +G  ++ +Y + G +  A ++
Sbjct: 245 PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKV 304

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS---HT 319
           F+ M + +V+ WS MIA +  +G   +A+DLF  M  + V+PN  T  S+L  C+    +
Sbjct: 305 FNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCS 364

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           GL E+   L   +  D     D+     ++D+  +  ++D A+KL   +S  K+E  W  
Sbjct: 365 GLGEQLHGLVVKVGFDL----DIYVSNALIDVYAKCEKMDTAVKLFAELS-SKNEVSWNT 419

Query: 380 LL 381
           ++
Sbjct: 420 VI 421



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 130/322 (40%), Gaps = 83/322 (25%)

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
           LDS+    ++R C  + D +  + IH  +LK G  +D F    L++ Y K     DA  L
Sbjct: 47  LDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNL 106

Query: 216 FDQMPTRDLVTWTVM---------IGA----------------NKFL-----LD------ 239
           FD+MP R+ V++  +         IG                   FL     LD      
Sbjct: 107 FDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICP 166

Query: 240 ------VILG--------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                 V LG         A+I+ Y+ CGS+DSAR +F+ +  K+++ W+ +++ Y  +G
Sbjct: 167 WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENG 226

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG-------------------- 325
             + +L L   M  +  +PN  TF + L A    G  +                      
Sbjct: 227 YFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGV 286

Query: 326 --LRLFSS---MWDDFAV-----RPDVKHYTCMVDLLGRAGRLDEALKLIESMS---VEK 372
             L+L++    M D F V     + DV  ++ M+    + G  +EA+ L   M    V  
Sbjct: 287 GLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVP 346

Query: 373 DEGLWGALLGACRIHKNVDLAE 394
           +E    ++L  C I K   L E
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGE 368


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/529 (38%), Positives = 290/529 (54%), Gaps = 62/529 (11%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           DP  F   + +C  + ++     +H  +V  G      V  +L+ +Y     L  A  LF
Sbjct: 134 DPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLF 193

Query: 116 NGMKERDSVSWSVMVG-----GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
             M ERD V+W+ ++      GFS  A      ++FRE    G++ DS T+   + AC  
Sbjct: 194 GSMVERDLVAWNALIAVCVQTGFSSKA-----LQSFREMGMAGIKPDSVTIVSALSACGH 248

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +  G  I++   + G+D +                                      
Sbjct: 249 LGCLETGEEIYEFAREEGIDSN-------------------------------------- 270

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                    +I+  A +DM AKCG +D A  +FD M Q+NVISWS +I  Y  +G+ +KA
Sbjct: 271 ---------IIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKA 321

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW--DDFAVRPDVKHYTCM 348
           L LF  M +  V PN +TF+++L ACSHTG V EG + F+ M   DD  ++P  +HY CM
Sbjct: 322 LALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACM 381

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VDLLGR+G L+EA   I+ M +E D G+WGALLGAC IH+N+ L +  A  L E  P+  
Sbjct: 382 VDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIA 441

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
            ++VLLSN+YA AGRW  V K+R  M ++  +K+  ++ +E   +IH    GD +HPQS 
Sbjct: 442 SYHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSA 501

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
            I   L  L ++++  GYIP+T+   HDV++E K   L +HSEKLAIAF LI       I
Sbjct: 502 SILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPI 561

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+MKNLR+CGDCH+F K VS IT R II+RD NRFHHF+ G CSC+D+W
Sbjct: 562 RVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 24/142 (16%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  AR++FD M +     W+ ++  Y  +G   KA+ ++  M    V P+  TF  ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 314 YACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            AC+           H  +V+ GL   +      AVR      T ++ +  + G L  A 
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVA------AVR------TELMIMYVKFGELGCAE 190

Query: 363 KLIESMSVEKDEGLWGALLGAC 384
            L  SM VE+D   W AL+  C
Sbjct: 191 FLFGSM-VERDLVAWNALIAVC 211


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/587 (36%), Positives = 313/587 (53%), Gaps = 93/587 (15%)

Query: 49  GPDC-QFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYAL 104
           G +C QFT       F S L +C +I       QVH  IV  G   N+ V + L+ +Y+ 
Sbjct: 235 GIECNQFT-------FPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSK 287

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
              L++A  +   M+  D VSW+ M+ G  +          FR      M++D +T P V
Sbjct: 288 CGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSV 347

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD- 223
           +       D+     +H +++K+G +  + V  ALVDMYAK    D A  +F++M  +D 
Sbjct: 348 LNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDV 407

Query: 224 -----LVTWTVMIGANKFLLDV-----ILG------------------------------ 243
                LVT  V  G+ +  L +     I+G                              
Sbjct: 408 ISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHAN 467

Query: 244 -------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                         +++ MYAKCG I+ A ++FD M  ++VI+W+A+I  Y  +G+G+  
Sbjct: 468 FLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR-- 525

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
                                      H GLVE G   F SM + + ++P  +HY CM+D
Sbjct: 526 --------------------------DHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMID 559

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGR+G+L EA +L+  M+V+ D  +W ALL ACR+H NV+L E AA +L E +P+N   
Sbjct: 560 LLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVP 619

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLLSN+Y+ AG+W++ AK R LM  R + K PG +WIE+ +K+H+F   D +HP++ EI
Sbjct: 620 YVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEI 679

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y  +  +   ++ AGY+PD NF LHD+DEE K   L  HSEKLA+AFGL+  P G  IRI
Sbjct: 680 YSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRI 739

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLR+CGDCH+ +K+VS +  R +I+RD+N FHHF  GACSC DYW
Sbjct: 740 FKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 193/423 (45%), Gaps = 66/423 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN-GMKERDSVSWSVMVGGFSK 135
           +Q+HA  +     +N  V   L+ +YA  K + +A  LF     +R+ V W+ MV G+S+
Sbjct: 158 KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQ 217

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
             D     E FR+    G++ + +T P ++ AC        G  +H  +++SG   + FV
Sbjct: 218 NGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFV 277

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------------------------ 231
            +ALVDMY+KC  + +AR++ + M   D V+W  MI                        
Sbjct: 278 GSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHM 337

Query: 232 -----------GANKFLLDV-------------------ILGTAVIDMYAKCGSIDSARE 261
                          F++D+                   ++  A++DMYAK G  D A +
Sbjct: 338 KIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFD 397

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F++M  K+VISW++++    ++G  ++AL LF  M    + P++I   ++L AC+   +
Sbjct: 398 VFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTV 457

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +E G ++ ++      +   +     +V +  + G +++A K+ +SM ++ D   W AL+
Sbjct: 458 LEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALI 515

Query: 382 ------GACRIHKN-VDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGRWQDVAKIRD 432
                 G  R H   V+      +S+ E     PG  HY  + ++   +G+  +  ++ +
Sbjct: 516 VGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLN 575

Query: 433 LMT 435
            M 
Sbjct: 576 QMA 578



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 147/348 (42%), Gaps = 65/348 (18%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N ++  YA    L +A  LF     R  ++WS ++ G+ +    +   E F E    G +
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            + +T   V+R C     +  G+ IH   +K+  D + FV   LVDMYAKCK I +A  L
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 216 FDQMP-TRDLVTWTVM------------------------IGANKFLL------------ 238
           F+  P  R+ V WT M                        I  N+F              
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 239 ------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                             +V +G+A++DMY+KCG + +AR + + M   + +SW++MI  
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
               G G++AL LF +M    +  +  T+ S+L   S    +   + + S       V+ 
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHS-----LIVKT 370

Query: 341 DVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
             + Y      +VD+  + G  D A  + E M+ +KD   W +L+  C
Sbjct: 371 GFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT-DKDVISWTSLVTGC 417



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 19/179 (10%)

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
           +KC  +DDAR+LFD MP RD  +W  MIGA                YA  G ++ AR++F
Sbjct: 52  SKCGRVDDARKLFDVMPDRDECSWNTMIGA----------------YANSGRLNEARKLF 95

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
                ++ I+WS++I+ Y  +G   +AL+LF  M      PN+ T+ S+L  CS   L+E
Sbjct: 96  YETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLE 155

Query: 324 EGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +G ++ + ++   F     V   T +VD+  +   + EA  L E    +++  LW A++
Sbjct: 156 KGKQIHAHAIKTQFDSNAFV--VTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMV 212


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/584 (35%), Positives = 300/584 (51%), Gaps = 85/584 (14%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           + F     +CR +  +RQ+HA     G  T+   AN L+  YA    LT A  LF  +  
Sbjct: 111 RLFSHLFRACRALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIPR 170

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFI------------------------------ 150
           R+ +SW+++ GG+ K  D     + F E                                
Sbjct: 171 RNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDM 230

Query: 151 -RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
            R GM  D + L  V R C   +D+V GR +H  V++SGLD D  V ++L  MY +C  +
Sbjct: 231 RREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCL 290

Query: 210 DDARQLFDQMPT-----------------------------------RDLVTWTVMIGAN 234
            +   +   +P+                                    D+VT+   I + 
Sbjct: 291 QEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSC 350

Query: 235 KFLLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
             L  +  G                   T ++ MY++CG +  +  +F      +    S
Sbjct: 351 SDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLS 410

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
           AMI+AYG+HG G+KA++LF  M++    P+ +TF++LLYACSH+GL EEG+  F  M   
Sbjct: 411 AMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKT 470

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
           + ++P VKHYTC+VDLLGR+G LDEA  LI SM +  D  +W  LL AC+  KN D+AE 
Sbjct: 471 YGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAER 530

Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
            AK ++E  P +   YVLLSN+ A + RW DV+++R  M    ++K PG +W+E++  IH
Sbjct: 531 IAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIH 590

Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
           QF  GD +HP+ +EI   L  +  K+   GY PD +  LHD+++E K  +L  HSEKLAI
Sbjct: 591 QFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAI 650

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           AF  ++ PEG  IR+MKNLRVC DCH  IK +S +T R I+VRD
Sbjct: 651 AFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/636 (33%), Positives = 327/636 (51%), Gaps = 107/636 (16%)

Query: 49  GPDCQFTRSVDPKFFISS-LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA 107
            P+     S  P   +S    SC+    ++Q+HA  +  G + + + A +++   A    
Sbjct: 7   NPNRTLNFSPQPPLILSKPFTSCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSR 66

Query: 108 LTD-AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF--IRCG--MQLDSYTLP 162
             D A A+F  M E +   W+ ++   ++  D     E    F  + C   ++ + +T P
Sbjct: 67  DIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFP 126

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV---------------------CAALVD 201
            V++AC     +  G+ IH +++K G   D+FV                     C  +VD
Sbjct: 127 SVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVD 186

Query: 202 MYAKCKV--------------------------IDDARQLFDQMPTR------------- 222
               C++                          I  A+ LFD+MP R             
Sbjct: 187 FDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYA 246

Query: 223 ----------------------------------------DLVTWT-VMIGANKFLLDVI 241
                                                   +L  W  +  G NK  +D +
Sbjct: 247 QNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDV 306

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG+A++DMY+KCGSID A ++F+ + ++N I+WSA+I A+  HG+ + A+  F +M  + 
Sbjct: 307 LGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN + ++ +L ACSH GLVEEG   FS M     ++P ++HY CMVDLLGRAG L+EA
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            +LI +M +E D+ +W ALLGAC++HKN+ + E  A++L+E  P + G YV LSN+YA+ 
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASL 486

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           G W+ VA++R  M    ++K PG +WIE+   IH+F V D +H +++EI  ML  +S KL
Sbjct: 487 GNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKL 546

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
              GY P+T     + DE+ +   L  HSEK+A+AFGLI+T     ++I+KNLR+C DCH
Sbjct: 547 RSNGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCH 606

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + +K +S I +R IIVRD  RFH FE G+CSC DYW
Sbjct: 607 ASLKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/501 (37%), Positives = 298/501 (59%), Gaps = 15/501 (2%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ+HA  VA     + +V + L+ +Y       DA  +F+ +  ++ V W+ +V G++  
Sbjct: 31  RQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASN 90

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  + FR     G+   +  +   ++A  +   +  G  +   + + G+ ID    
Sbjct: 91  GCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAV--GLFVE--MRRDGVRID---- 142

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
               D +    V+  A +L   +  R L  + + +G   FL  +I+G A++DMY+KC  I
Sbjct: 143 ----DAFVLATVVGGAAELAALVLGRQLHGFAITLG---FLSSMIVGNALVDMYSKCSDI 195

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
            SARE+F  +  ++V+SW+ ++     HG+ ++ L L+  ML + + PN +TFV L+YAC
Sbjct: 196 HSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYAC 255

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLV++G +LF SM  ++ ++P ++HYTC +DLL R+G L EA +LI +M  E DE  
Sbjct: 256 SHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEAS 315

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALL AC+ H +  +    A +LLE +P++P  Y+LLSNVYA   +W  VAK+R +M  
Sbjct: 316 WGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAE 375

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             ++K PG++WIE   +   F  G+      EEI R L  L  ++   GY+PDT+  +HD
Sbjct: 376 MEIRKEPGYSWIEAGRESRMFHAGEVPLDIGEEITRFLEELVSEMRKRGYVPDTSSVMHD 435

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           ++E  K  +L+ HSE+LA+AFG++ +P G+ IR++KNLRVCGDCH+ +K +S I +R II
Sbjct: 436 LEENEKEQHLFLHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISEIAQRKII 495

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRDA+RFHHFE G CSC ++W
Sbjct: 496 VRDASRFHHFEDGNCSCSEFW 516



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 16/121 (13%)

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           GR +H   + S    D  V ++L+DMY KC V +DAR++FD +  ++ V W         
Sbjct: 30  GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVW--------- 80

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                  TA++  YA  G    A ++F  M ++ + +W+A+I+ +   G    A+ LF  
Sbjct: 81  -------TALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVE 133

Query: 297 M 297
           M
Sbjct: 134 M 134


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/546 (39%), Positives = 304/546 (55%), Gaps = 47/546 (8%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  +V  G   +  + + L+++YA  K L  A  LFN    RD VSW+ M+ G+ K  +
Sbjct: 217 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 276

Query: 139 FINCFETF-----REFIRCGMQLDSYTLPFVIRACR------DRKDIVMGRLIHDIVLKS 187
             +    F     R+ I     ++ Y +   I   +        +++V    +    +K 
Sbjct: 277 MGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKC 336

Query: 188 GLDIDQF------VCAALVD------MYAKCKVIDDARQLFDQM------PTR----DLV 225
           G   D F       C  +V        YA+C   ++A  LFDQM      PT      L+
Sbjct: 337 GNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 396

Query: 226 TWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI 272
           +    +GA             N+  ++ I+GTA++DMYAKCG I  A ++F+ M  K+V+
Sbjct: 397 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 456

Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
           +W+ +IA    HG  K+A  LF  M  + V PN ITFV++L ACSH G+V+EG +L   M
Sbjct: 457 AWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCM 516

Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
              + + P V+HY C++DLL RAG L+EA++LI +M +E +    GALLG CRIH N +L
Sbjct: 517 SSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFEL 576

Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
            EM  K L+  QP + G Y+LLSN+YA A +W D  K+R+LM    + K+PG + IE++ 
Sbjct: 577 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 636

Query: 453 KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA-GYIPDTNFELHDVDEEVKVGNLYSHSE 511
            +H+F  GD +HP+S +IY  L  +  +L+ A GY  DT   L D++EE K   L  HSE
Sbjct: 637 MVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSE 696

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLAIA+GL+       IRI+KNLRVC DCH  IK +S +  R IIVRD NRFHHFE G C
Sbjct: 697 KLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGEC 756

Query: 572 SCRDYW 577
           SC D+W
Sbjct: 757 SCLDFW 762



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 200/440 (45%), Gaps = 55/440 (12%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAG-GTLTNLIVANKLLYIYAL 104
           M   P+       +P+  +S    C+ +  ++QVHAQI+    +   L     L  +   
Sbjct: 83  MSRTPNPLTNPPSNPQI-LSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPF 141

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
              L  A  +F+ ++      ++ ++   S     +     +   ++ G++ D  T PFV
Sbjct: 142 PTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFV 201

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           I+AC +      G L+H  V+KSG + D ++ ++L+ +YA  K +  A+QLF+    RD+
Sbjct: 202 IKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDV 261

Query: 225 VTWTVMI---------GANKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
           V+W  MI         G  + +       DVI    +I+ YA  G ID A+ +FD M ++
Sbjct: 262 VSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPER 321

Query: 270 N-------------------------------VISWSAMIAAYGYHGQGKKALDLFPMML 298
           N                               V+SW++M+A Y   G+  +AL LF  M 
Sbjct: 322 NLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMR 381

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAG 356
           +  V P   T VSLL AC+H G +++GL L + + D+   R +V     T +VD+  + G
Sbjct: 382 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDN---RIEVNSIVGTALVDMYAKCG 438

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLS 415
           ++  A ++  +M   KD   W  ++    IH NV  A+   K + E   + N   +V + 
Sbjct: 439 KISLATQVFNAME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 497

Query: 416 NVYANAGRWQDVAKIRDLMT 435
           +  ++AG   +  K+ D M+
Sbjct: 498 SACSHAGMVDEGQKLLDCMS 517



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 104/233 (44%), Gaps = 27/233 (11%)

Query: 64  ISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S L +C ++  + +   +H  I       N IV   L+ +YA    ++ A  +FN M+ 
Sbjct: 393 VSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMES 452

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D ++W+ ++ G +   +     + F+E    G++ +  T   ++ AC     +  G+ +
Sbjct: 453 KDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKL 512

Query: 181 HDIVLKS-GLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA--- 233
            D +  S G++  ++ + C  ++D+ A+   +++A +L   MP   +      ++G    
Sbjct: 513 LDCMSSSYGIEPKVEHYGC--VIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRI 570

Query: 234 -NKFLLDVILGTAVIDM--------------YAKCGSIDSAREIFDRMRQKNV 271
              F L  ++G  +I++              YA     D AR++ + M+   +
Sbjct: 571 HGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 623


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/518 (38%), Positives = 293/518 (56%), Gaps = 50/518 (9%)

Query: 63   FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            F S++ +C  I  +RQ   +HAQ  A G   +L + N L+ +YA    + +A+  F  + 
Sbjct: 567  FASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIG 626

Query: 120  ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
            +++++SW+ +V G ++   F    + F   +R   +++ +T    I A     +I  G+ 
Sbjct: 627  DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQ 686

Query: 180  IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
            IH +VLK+G D ++ V  +L                                        
Sbjct: 687  IHSMVLKTGYDSEREVSNSL---------------------------------------- 706

Query: 240  VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                   I +YAK GSI  A   F+ M ++NVISW+AMI  Y  HG G +AL LF  M  
Sbjct: 707  -------ISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKV 759

Query: 300  SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
              ++PN +TFV +L ACSH GLV+EGL  F SM+    + P  +HY C+VDLLGRAG+LD
Sbjct: 760  CGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLD 819

Query: 360  EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
             A++ I+ M +  D  +W  LL AC IHKN+++ E AA  LLE +P++   YVL+SN+YA
Sbjct: 820  RAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA 879

Query: 420  NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
             + +W      R LM    +KK PG +WIEV+N +H F  GD  HP + +IY  +  L+ 
Sbjct: 880  VSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNR 939

Query: 480  KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
            +    GY+ D+   L++ ++  K    + HSEKLAIAFGL++      IR+MKNLRVC D
Sbjct: 940  RTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCND 999

Query: 540  CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            CH++IK+VS I+ R IIVRDA+RFHHF+GG CSC+D+W
Sbjct: 1000 CHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 163/380 (42%), Gaps = 60/380 (15%)

Query: 62  FFISSLLSCRNIFQI----RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           + +SS+LS     Q+     Q+H  ++  G  +   V N L+ +Y+  + L  A  +F+ 
Sbjct: 262 YVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFST 321

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  RD VS++ ++ G  +        E F +  R  ++ D  T+  ++ AC     +  G
Sbjct: 322 MNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG 381

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---- 233
             +H   +K+G+  D  +  +L+D+Y+KC  ++ A + F    T ++V W VM+ A    
Sbjct: 382 MQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQL 441

Query: 234 --------------------NKFL------------------------------LDVILG 243
                               N+F                               L+V + 
Sbjct: 442 DNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVC 501

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           + +IDMYAK G +  A  I  R+ + +V+SW+AMIA Y  H    +AL LF  M    + 
Sbjct: 502 SVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQ 561

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
            + I F S + AC+    + +G ++ +  +       D+     ++ L  R GR+ EA  
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAA-GFGADLSINNALISLYARCGRIQEAYL 620

Query: 364 LIESMSVEKDEGLWGALLGA 383
             E +  +K+   W +L+  
Sbjct: 621 AFEKIG-DKNNISWNSLVSG 639



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 152/378 (40%), Gaps = 59/378 (15%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           + +   L+  ++F+  ++H +I   G     ++ + L+  Y  H     A  +F+    R
Sbjct: 63  WLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNR 122

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG--RL 179
              SW+ M+  F         F  FR  +  G+  + YT   V++AC    DI     + 
Sbjct: 123 SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVG-GDIAFNYVKQ 181

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------ 233
           +H      G D    V   L+D+Y+K   I+ A+++F+ +  +D+VTW  MI        
Sbjct: 182 VHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGL 241

Query: 234 ------------------NKFLLDVILGTA------------------------------ 245
                               ++L  +L  +                              
Sbjct: 242 EEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNG 301

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           ++ +Y++   + SA  IF  M  ++ +S++++I+     G   +AL+LF  M    + P+
Sbjct: 302 LVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPD 361

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
            IT  SLL AC+  G + +G++L S       +  D+     ++DL  +   ++ A K  
Sbjct: 362 CITVASLLSACASVGALHKGMQLHSHAIKA-GMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 366 ESMSVEKDEGLWGALLGA 383
                E +  LW  +L A
Sbjct: 421 LXTETE-NIVLWNVMLVA 437


>gi|15228954|ref|NP_191214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180975|sp|Q9LXY5.1|PP284_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g56550
 gi|7594533|emb|CAB88058.1| putative protein [Arabidopsis thaliana]
 gi|91806586|gb|ABE66020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646013|gb|AEE79534.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 292/518 (56%), Gaps = 48/518 (9%)

Query: 61  KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
            F + S    ++I +  ++H  ++  G L + IVA  L+  Y+ + ++  A  +F+ M  
Sbjct: 111 NFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPV 170

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           RD VSW+VM+  FS V         ++     G+  DSYTL  ++ +C     + MG ++
Sbjct: 171 RDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVML 230

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
           H I      DI    C                                           V
Sbjct: 231 HRI----ACDIRCESC-------------------------------------------V 243

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +  A+IDMYAKCGS+++A  +F+ MR+++V++W++MI  YG HG G +A+  F  M++S
Sbjct: 244 FVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVAS 303

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V PN ITF+ LL  CSH GLV+EG+  F  M   F + P+VKHY CMVDL GRAG+L+ 
Sbjct: 304 GVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLEN 363

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           +L++I + S  +D  LW  LLG+C+IH+N++L E+A K L++ +  N G YVL++++Y+ 
Sbjct: 364 SLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSA 423

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           A   Q  A +R L+    L+ +PGW+WIE+ +++H+F V D  HP+S  IY  L  +  +
Sbjct: 424 ANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINR 483

Query: 481 LELAGYIP-DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
             LAGY P D+N     + +        SHSEKLAIA+GL+ T  GT +RI KNLRVC D
Sbjct: 484 AILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRD 543

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CHSF K+VS    R IIVRD  RFHHF  G CSC DYW
Sbjct: 544 CHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 312/569 (54%), Gaps = 72/569 (12%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF------NGMKERDSVSWSVMVG 131
           Q+H+ I+  G   N +V  K     +   A+  A ++             D+  ++ ++ 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 132 GFSKVAD----FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
            F++        +  + T R   R  +  + +T PFV++AC     + +G  +H  ++K 
Sbjct: 200 AFAQTTHSKPHALRFYNTMR---RHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKF 256

Query: 188 GLDIDQFVCAALVDMYAKC-----KVIDDARQLFDQMPTRDLVTWTVM------------ 230
           G + D  V   LV MY  C          A+++FD+ P +D VTW+ M            
Sbjct: 257 GFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSAR 316

Query: 231 -----------------------------IGA-------------NKFLLDVILGTAVID 248
                                        +GA                +  V L  A+ID
Sbjct: 317 AVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALID 376

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           M+AKCG +D A ++F  M+ + ++SW++MI     HG+G +A+ +F  M+   V P+ + 
Sbjct: 377 MFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVA 436

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ +L ACSH+GLV++G   F++M + F++ P ++HY CMVD+L RAGR++EAL+ + +M
Sbjct: 437 FIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAM 496

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            VE ++ +W +++ AC     + L E  AK L+ R+P +  +YVLLSN+YA   RW+   
Sbjct: 497 PVEPNQVIWRSIVTACHARGELKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKT 556

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           K+R++M  + ++KIPG T IE+ N+I++F  GD +H Q +EIY M+  +  +++ AGY+P
Sbjct: 557 KVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVP 616

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
            T+  L D+DEE K   LY HSEKLAIAF L++TP GT IRI+KNLRVC DCHS  K +S
Sbjct: 617 TTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFIS 676

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +  R I+VRD NRFHHF+ G CSC D+W
Sbjct: 677 KVYNREIVVRDRNRFHHFKNGLCSCGDFW 705


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 303/547 (55%), Gaps = 63/547 (11%)

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
           ++   LL  YA    L+ A A F+ ++  D VSW+ M   + +          F   +  
Sbjct: 256 VLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLE 315

Query: 153 GMQLDSYTLPFVIRACR---DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           G++    T    + AC     +    +G+ I  ++ ++GL+ D  V  A ++MYAKC  +
Sbjct: 316 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 375

Query: 210 DDARQLFDQM-PT-RDL------------------------------------VTWTVMI 231
            DAR +F+++ PT RD                                     VT+  ++
Sbjct: 376 ADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVL 435

Query: 232 GA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM--RQKN 270
            A                   N F  D ++  A+++MYAKCGS+D A+ IFD+    Q++
Sbjct: 436 DASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQED 495

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VI+W++++A Y  +GQ ++AL LF  M    V PN ITF+S L AC+H G +E+G  L S
Sbjct: 496 VIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLS 555

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M  D  + P  KH++C+VDLLGR GRLDEA KL+E  S + D   W ALL AC+  K +
Sbjct: 556 GMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKEL 614

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +  E  A+ +++  P+    Y++L+++YA AGRW + A IR  M  + ++  PG + +EV
Sbjct: 615 ERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEV 674

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
             ++H FS GD +HP+SEEIY  L  L   ++ AGY+ DT   LHDV +E K   L  HS
Sbjct: 675 NQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHS 734

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGL++TP G+ +R++KNLRVC DCH+  K +S +T R I++RD++R+HHF  G 
Sbjct: 735 EKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGT 794

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 795 CSCGDYW 801



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 178/409 (43%), Gaps = 79/409 (19%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102
           M++ P+C           I+ + +C    N+   R++H+QI       N ++ N L+ +Y
Sbjct: 1   MEVRPNCHA--------LIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMY 52

Query: 103 ALHKALTDAHALFNGM---KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DS 158
           +   +L DA   F+ +    +RD V+W+ M+  F +        + FR+    G    +S
Sbjct: 53  SKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNS 112

Query: 159 YTLPFVIRACRDRKDIVMG--RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
            T   V+ +C +   + +   R IH  ++ +G++ + FV  ALVD Y K   +DDA ++F
Sbjct: 113 VTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF 172

Query: 217 ----DQMPTRDLVTWTVMIG---------------------------------------- 232
               D+ P+  LVT + MI                                         
Sbjct: 173 LRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSML 232

Query: 233 ----ANKFLL-----------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
               A  F+L           D +LGT ++  YA+   +  AR  FD ++  +V+SW+AM
Sbjct: 233 PVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAM 292

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-SHTGLVEEGL-RLFSSMWDD 335
            AAY  H + ++AL LF  ML   V P+  TF++ L AC ++       + +   S+ ++
Sbjct: 293 AAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEE 352

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEKDEGLWGALLGA 383
             +  D       +++  + G L +A  + E +S   +D   W ++L A
Sbjct: 353 AGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAA 401



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 31/226 (13%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN--GMKERDSVSWSVM 129
           +I Q R++HA++V+ G  ++ ++ N LL +YA   +L DA A+F+     + D ++W+ +
Sbjct: 443 SIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSL 502

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           V G+++        + F    + G++ +  T    + AC        G+L     L SG+
Sbjct: 503 VAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHG-----GKLEQGCELLSGM 557

Query: 190 DIDQFVCAA------LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK-------- 235
             D  +  A      +VD+  +C  +D+A +L ++    D++TW  ++ A K        
Sbjct: 558 TPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACKNSKELERG 617

Query: 236 -------FLLDVILGTAVI---DMYAKCGSIDSAREIFDRMRQKNV 271
                    LD  + ++ I    MYA  G  + A  I   M  K +
Sbjct: 618 ERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGI 663


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 194/497 (39%), Positives = 278/497 (55%), Gaps = 48/497 (9%)

Query: 82  QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
           Q+     + NL   N +L  Y     L  A  +F  M  +D VSWS M+ GF+   +F +
Sbjct: 193 QVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFND 252

Query: 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201
            F  FRE  R GM+ +  +L  V+ AC        GR++H  V KSG             
Sbjct: 253 AFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSG------------- 299

Query: 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                             FL  + +  A+ID Y+KCG++D AR 
Sbjct: 300 ----------------------------------FLQIISVNNALIDTYSKCGNLDMARL 325

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M +++ +SW+AMIA    HG G++A+ LF  M  S + P+ ITF+S+LYACSH GL
Sbjct: 326 VFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGL 385

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+ G   FS M + + + P ++HY CMVDL GRAG+L +A   +  M +  ++ +W  LL
Sbjct: 386 VDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLL 445

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC IH N+ LA    + L E  P+N G +VLLSN+YA AG+W+DVA +R  MT +RLKK
Sbjct: 446 GACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKK 505

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEE 500
            PGW+ IEV   I+ F  G+  +  + E ++ L  +  +L +  GY+P+    LHD++ E
Sbjct: 506 TPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVE 565

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            K  ++  HSEKLA+AFG+   P G  IR++KNLR+C DCH+ +K +S +    I+VRD 
Sbjct: 566 EKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDR 625

Query: 561 NRFHHFEGGACSCRDYW 577
           +RFH F  G+CSCRDYW
Sbjct: 626 SRFHSFTHGSCSCRDYW 642



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 166/370 (44%), Gaps = 25/370 (6%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKALTDAHALFNGMKERDSVSWS 127
           C+++  ++Q+ A I      +  +V+ KLL   A  L  +L  A  LF  ++  D   ++
Sbjct: 15  CKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYN 74

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
            ++ G S      N  + F E  R  + L DS++  F+++A  + + +  G  +H + + 
Sbjct: 75  TLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVG 134

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NK 235
            GLD   FV   L+ MYA+C  +  AR++FD+M   ++V W  ++ A             
Sbjct: 135 YGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQV 194

Query: 236 F----LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
           F    + ++     ++  Y K G +  ARE+F +M  K+ +SWS MI  + ++G    A 
Sbjct: 195 FRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAF 254

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
             F  +    + PN ++   +L AC+  G  E G R+     +       +     ++D 
Sbjct: 255 AFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG-RILHGFVEKSGFLQIISVNNALIDT 313

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PG 409
             + G LD A  + ++M + +    W A++    +H      E A +   E +  N  P 
Sbjct: 314 YSKCGNLDMARLVFDNM-LRRSAVSWTAMIAGMAMH---GYGEEAIRLFNEMEESNIKPD 369

Query: 410 HYVLLSNVYA 419
               +S +YA
Sbjct: 370 SITFISILYA 379



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R +H  +   G L  + V N L+  Y+    L  A  +F+ M  R +VSW+ M+ G +  
Sbjct: 289 RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMH 348

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLD--IDQ 193
                    F E     ++ DS T   ++ AC     + +G      +V   G++  I+ 
Sbjct: 349 GYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEH 408

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA 233
           + C  +VD+Y +   +  A     QMP + + + W  ++GA
Sbjct: 409 YGC--MVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGA 447


>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Cucumis sativus]
          Length = 602

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/573 (34%), Positives = 319/573 (55%), Gaps = 58/573 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY--IYALHKALTDAHALFNGMKE 120
            IS + SC +  Q+ Q+HA I+   ++ + IV+ + L     A  + L  +  LF+ +  
Sbjct: 30  LISLIKSCTHKSQLLQIHAHIITTSSIQDPIVSLRFLTRTASAPFRDLGYSRRLFDLLTN 89

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
                ++ M+  +S     +     +R+  R G++ D  +  F +++C     ++ G  I
Sbjct: 90  PFVSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQI 149

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-------------------T 221
           H  +  +G   D  +  +++D+Y+ C   ++A +LFD++P                   T
Sbjct: 150 HARIFINGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKRT 209

Query: 222 RDL------------------VTWTVMIGA-------------------NKFLLDVILGT 244
           RD                   VT  +++ A                   + +  +  L  
Sbjct: 210 RDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNTESNLCN 269

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           ++I MY++CG +D A E+FD+M +KNV+SWSAMI+    +G G++A++ F  M  + V P
Sbjct: 270 SLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGLSMNGHGREAIEAFWEMQKNGVEP 329

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
              TF ++L ACSH GLV+EG+  F  M  +F + P+V HY C+VDLLGRAG LD+A +L
Sbjct: 330 GDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAGMLDQAYEL 389

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I SM V  D  +W  LLGACRIH + +L E   + L+E + Q  G YVLL N+Y++AG W
Sbjct: 390 IMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLIELKSQEAGDYVLLLNIYSSAGNW 449

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
             V ++R LM  + +   P  T IE+   +HQF+V D +HP  ++IY+ L  ++++L++A
Sbjct: 450 DKVTELRKLMKEKGIYTTPCCTTIELNGVVHQFAVDDISHPMKDKIYKQLDEINKQLKIA 509

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY  + + ELH ++ + K   L +HSEKLAIAFG++ATP G  IRI  N+R C DCH+F 
Sbjct: 510 GYEAEMSSELHRLEPKDKGYALSNHSEKLAIAFGVLATPPGRTIRIANNIRTCMDCHNFA 569

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K++S++  R ++VRD +RFHHF+ G CSC D+W
Sbjct: 570 KYISSVYNRKVVVRDRSRFHHFQEGRCSCNDFW 602


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 203/590 (34%), Positives = 304/590 (51%), Gaps = 87/590 (14%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
            +R+ HA+++  G   +      L+  YA  + L D   LF+    RD   +S ++   S
Sbjct: 21  SLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVS 80

Query: 135 KVADFINCFETFREFIRC-GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
                       R  +    ++ D + L  +  A    + + +G+ +H   + S    D 
Sbjct: 81  HSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDD 140

Query: 194 FVCAALVDMYAKCKVIDDAR-------------------------------QLFDQMPTR 222
            V ++L+DMY KC V DDAR                               +LF  MP R
Sbjct: 141 VVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGR 200

Query: 223 DLVTWTVMIG----------ANKFLLDV-------------------------------- 240
            L  WT +I           A K  +D+                                
Sbjct: 201 TLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQL 260

Query: 241 -------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                        I+G AV+DMY+KC  I SARE+F+ +  +++ISW+ M+     HG+ 
Sbjct: 261 HSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRA 320

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           ++A  L+  M+ + V PN +TFV L+YACSH GLV++G +LF SM  ++ + P ++HYTC
Sbjct: 321 EEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTC 380

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
            +DLL R+G L EA +LI +M    DE  W +LL AC+ + N +++   A +LLE +P+ 
Sbjct: 381 YLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKY 440

Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
           P  YVLLSNVYA  G+W  V  +R LM    ++K PG++WIEV  +   F  G+      
Sbjct: 441 PSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLR 500

Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
           EEI   L  L  ++   GY+PDT+  +HD++E  K  +L  HSE+LA+AFG++ +P G+ 
Sbjct: 501 EEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSV 560

Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IR++KNLRVC DCH+ +K +S I +R IIVRDA+RFHHFEGG CSC ++W
Sbjct: 561 IRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 322/576 (55%), Gaps = 62/576 (10%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMK 119
           +F   L  C +  QI+Q+ A ++  G         KLL + A+     L+ A  +F  + 
Sbjct: 3   YFNLLLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIP 62

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMG 177
              +  W+ ++ G +  +D  N    +R         ++D+ T  F ++AC         
Sbjct: 63  YPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEA 122

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM------- 230
             +H  +L+ G + D  +   L+D YAK   +D A++LFD+MP  D+ +W  +       
Sbjct: 123 IQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQG 182

Query: 231 -----------------------------------IGA-------NKFLLDVILGT---- 244
                                              +GA       +K++++  L +    
Sbjct: 183 SRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQV 242

Query: 245 --AVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
              VIDMYAKCGS+D A  +F+ MR  K++I+W+ MI A+  HG G KALDLF  +  S 
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSG 302

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+ ++++++L AC+H GLVE+GL+LF+SM     + P++KHY  MVDLLGRAGRL EA
Sbjct: 303 MSPDAVSYLAVLCACNHAGLVEDGLKLFNSM-TQRGLEPNIKHYGSMVDLLGRAGRLKEA 361

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             ++ S+    +  LW  LLGACR + +V++AE+A++ L+E    + G +VLLSNVYA  
Sbjct: 362 YDIVSSLPFP-NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVLLSNVYAAR 420

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            RW DV ++RD M RR +KK PG+++IE++ K+++F  GD +H    EIY  L  ++ ++
Sbjct: 421 QRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRI 480

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY  DT+  LHD+ +E K   L  HSEKLA+AFGL  T EGT I+++KNLR+CGDCH
Sbjct: 481 KAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCH 540

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             IK +S I  R IIVRD  RFH F+ G CSC+DYW
Sbjct: 541 VVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 189/500 (37%), Positives = 296/500 (59%), Gaps = 48/500 (9%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H+ ++  G  + + V N LL++YA    +  A+ +F+ M E+D V+W+ ++ GF++   
Sbjct: 10  IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 69

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                  + E    G++ D +T+  ++ AC     + +G+ +H  ++K GL  +      
Sbjct: 70  PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 129

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           L+D+YA+C  +++A+ LFD+M  ++ V+WT           +I+G AV            
Sbjct: 130 LLDLYARCGRVEEAKTLFDEMVDKNSVSWT----------SLIVGLAV------------ 167

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACS 317
                                    +G GK+A++LF  M S+  +LP  ITFV +LYACS
Sbjct: 168 -------------------------NGFGKEAIELFKYMESTEGLLPCEITFVGILYACS 202

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H G+V+EG   F  M +++ + P ++H+ CMVDLL RAG++ +A + I+SM ++ +  +W
Sbjct: 203 HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIW 262

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LLGAC +H + DLAE A   +L+ +P + G YVLLSN+YA+  RW DV KIR  M R 
Sbjct: 263 RTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRD 322

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            +KK+PG + +EV N++H+F +GD +HPQS+ IY  L  ++ +L   GY+P  +    DV
Sbjct: 323 GVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDV 382

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +EE K   +  HSEK+AIAF LI+TPE + I ++KNLRVC DCH  IK VS +  R I+V
Sbjct: 383 EEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVV 442

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD +RFHHF+ G+CSC+DYW
Sbjct: 443 RDRSRFHHFKNGSCSCQDYW 462



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 26/196 (13%)

Query: 55  TRSVDPK-FFISSLLS-CRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           ++ + P  F I SLLS C  I  +   ++VH  ++  G   NL  +N LL +YA    + 
Sbjct: 82  SKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVE 141

Query: 110 DAHALFNGMKERDSVSWSVM-----VGGFSKVA-DFINCFETFREFIRCGMQLDSYTLPF 163
           +A  LF+ M +++SVSW+ +     V GF K A +     E+    + C +     T   
Sbjct: 142 EAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI-----TFVG 196

Query: 164 VIRACRDRKDIVMG-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           ++ AC     +  G     R+  +  ++    I+ F C  +VD+ A+   +  A +    
Sbjct: 197 ILYACSHCGMVKEGFEYFRRMREEYKIEP--RIEHFGC--MVDLLARAGQVKKAYEYIKS 252

Query: 219 MPTR-DLVTWTVMIGA 233
           MP + ++V W  ++GA
Sbjct: 253 MPMQPNVVIWRTLLGA 268


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/556 (37%), Positives = 302/556 (54%), Gaps = 57/556 (10%)

Query: 77   RQVHAQIVAGGTLTNL-IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            R VH  ++       L  +   L+ +YA    L D H +F  +KE+  +SW+ ++  F++
Sbjct: 519  RSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTR 578

Query: 136  VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                      F +    G+  DSY+L   + AC       +G  IH  ++K+G + + FV
Sbjct: 579  NGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFV 637

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTR--------------------------------- 222
              AL+DMYAKC  +  A ++F+++  +                                 
Sbjct: 638  QNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCV 697

Query: 223  --DLVTWTVMIGA--------------NKFLL-----DVILGTAVIDMYAKCGSIDSARE 261
              D +T+  +I A              +K ++     D  L TA+ DMY+KCG +  A  
Sbjct: 698  KMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHG 757

Query: 262  IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            +FDRM +++++SWS MIA YG HGQ    + LF  ML S + PN ITF+ +L ACSH G 
Sbjct: 758  VFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGA 817

Query: 322  VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            VEEG   F+SM  +F V P   H+ CMVDLL RAG L+ A ++I S+    +  +WGALL
Sbjct: 818  VEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 876

Query: 382  GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
              CRIHK +D+ +   K+LL+    + G+Y LLSN+YA  G W    K+R +M  + L+K
Sbjct: 877  NGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRK 936

Query: 442  IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            +PG++ IE++ KI++F  GD++H Q+++IYR L      +    Y  + +  +    +  
Sbjct: 937  VPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFN 996

Query: 502  KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
            K  N+ SHSEKLAIAFG+I T  GT +RI KNLRVC DCHSF K  S IT R II+RD N
Sbjct: 997  KENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLN 1056

Query: 562  RFHHFEGGACSCRDYW 577
            RFH F  G+CSC DYW
Sbjct: 1057 RFHCFRNGSCSCNDYW 1072



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/460 (19%), Positives = 184/460 (40%), Gaps = 111/460 (24%)

Query: 39  PMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98
           P +P         C FT  ++    ++S   C     + Q+HA +   G   +   + KL
Sbjct: 329 PGDPPGEASAEYACFFT--LNSSRSLTSHKRCATSTTLTQLHAHLFITGLHRHPPASTKL 386

Query: 99  LYIYALHKALTDAHALFNGMKERDSVSWSVMV-----GGF----------------SKVA 137
           +  YA       +  +F+   + DS  W V++     GGF                ++++
Sbjct: 387 IESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQIS 446

Query: 138 DFI------------------------NCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+                           + F + I   ++ DS T+  V  AC +   
Sbjct: 447 NFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGS 506

Query: 174 IVMGRL--------IHDIVLKSGLDID-QFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           + +GRL        +H  V++  +D +  F+  AL+++YA    + D  ++F+ +  + +
Sbjct: 507 LRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTI 566

Query: 225 VTWTVMIG--------ANKFLLDVILGTAVI--------DMYAKCGSID----------- 257
           ++W  +I             LL V + T  +           + CG+I            
Sbjct: 567 LSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGY 626

Query: 258 --------------------------SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                                     SA ++F+++++K++++W++MI  +  +G   +A+
Sbjct: 627 IIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAI 686

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            LF  M  + V  +++TF+S++ ACSH G +E+G  +   +   + +R D    T + D+
Sbjct: 687 TLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI-MYGLRKDSYLDTALTDM 745

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
             + G L  A  + + MS E+    W  ++    +H  ++
Sbjct: 746 YSKCGELQMAHGVFDRMS-ERSIVSWSVMIAGYGMHGQIN 784



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/238 (21%), Positives = 105/238 (44%), Gaps = 26/238 (10%)

Query: 58  VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +D   F+S + +C ++  + +   VH +++  G   +  +   L  +Y+    L  AH +
Sbjct: 699 MDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGV 758

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+ M ER  VSWSVM+ G+            F + +  G++ +  T   ++ AC     +
Sbjct: 759 FDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAV 818

Query: 175 VMGRLIHDIVLKSGLDI--DQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMI 231
             G+L  + + + G++   D F C  +VD+ ++   ++ A Q+   +P   +   W  ++
Sbjct: 819 EEGKLYFNSMSEFGVEPKHDHFAC--MVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 876

Query: 232 GA-------------NKFLLDVILG-----TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
                           K LLDV        T + ++YA+ G+ D   ++   M+ K +
Sbjct: 877 NGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGL 934


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/556 (35%), Positives = 310/556 (55%), Gaps = 56/556 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H   V  G  T L VA+ L  +Y+    L++A  +F+ M ++D+V+W+ M+ G++K  
Sbjct: 143 QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 202

Query: 138 DFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  +FR+  R G+   D +    V+ A    KD  + + IH  V K+G +++  V 
Sbjct: 203 SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVR 262

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA---------------------- 233
            AL+DMYAK   ++ A ++    P   ++V+ T MI                        
Sbjct: 263 NALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGV 322

Query: 234 --NKFLL------------------------------DVILGTAVIDMYAKCGSIDSARE 261
             N+F                                D  +G+ ++DMY KCG I  + +
Sbjct: 323 EPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQ 382

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+ +  +  I+W+A+I  +  HG G++A+  F  M+ S + PN I FVSLL ACSH GL
Sbjct: 383 LFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGL 442

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+EGL+ F SM +   + P  +HY+C++D  GRAGRLDEA K I  M ++ +   W +LL
Sbjct: 443 VDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLL 502

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+  + +L E+AA++L++ +P N G +V LS +YA+ G+W+DV  +R LM   R+KK
Sbjct: 503 GACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKK 562

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           +PG++W++   K H F   D +HPQ ++IY  L  L+ +++  GYIPDT+F   ++++  
Sbjct: 563 LPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIA 622

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSE++A+AF LI+ P    I + KNLR+C DCH+  K +  + RR IIVRD +
Sbjct: 623 KERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNS 682

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 683 RFHHFVNGRCSCGDYW 698



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 166/377 (44%), Gaps = 62/377 (16%)

Query: 65  SSLLSCRNIFQIRQ---VHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           S L SC     +R+   +HA++V +G    +  +AN L+ +Y+    L  A  LF  M  
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 84

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R++VSW+ +V G S+     +    F    R G+    + L    RA       + G  +
Sbjct: 85  RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQL 144

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
           H + ++ G D + FV + L DMY+KC ++ +A ++FDQMP +D V WT MI         
Sbjct: 145 HCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 204

Query: 232 ----------------GANK------------------------------FLLDVILGTA 245
                           GA++                              F L+V +  A
Sbjct: 205 EAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNA 264

Query: 246 VIDMYAKCGSIDSAREIFD-RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           +IDMYAK   ++SA  +        NV+S ++MI  Y      ++AL ++  +    V P
Sbjct: 265 LIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEP 324

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N  TF S++  C+   L+E+G +L + +     +R      T +VD+ G+ G +  +++L
Sbjct: 325 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST-LVDMYGKCGLISLSMQL 383

Query: 365 IESMSVEKDEGLWGALL 381
              +    D   W A++
Sbjct: 384 FNEIEYRTDIA-WNAVI 399



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 161 LPFVIRACRDRKDIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           L  ++++C    D+  GRL+H  +VL        F+   L+ MY+ C  +  A +LF  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 220 PTRDLVTWTVMI 231
           P R+ V+WT ++
Sbjct: 83  PRRNAVSWTTLV 94


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/510 (38%), Positives = 282/510 (55%), Gaps = 52/510 (10%)

Query: 69  SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
           SC  I   R++      GG L +LI  N ++  Y    ++ DA  LF  M E+D VSWS 
Sbjct: 317 SCGEIVDARRIFDD---GGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSA 373

Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           M+ G+++   F      F+E    G++ D   L   I AC                    
Sbjct: 374 MISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISAC-------------------- 413

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVILGTAVI 247
                                         + T DL  W    I  NK  ++VIL T +I
Sbjct: 414 ----------------------------THLATLDLGKWIHAYISRNKLQVNVILSTTLI 445

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DMY KCG +++A E+F  M +K V +W+A+I     +G  +++L++F  M  +  +PN I
Sbjct: 446 DMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEI 505

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           TF+ +L AC H GLV +G   F+SM  +  +  ++KHY CMVDLLGRAG L EA +LI+S
Sbjct: 506 TFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDS 565

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M +  D   WGALLGACR H++ ++ E   + L++ QP + G +VLLSN+YA+ G W +V
Sbjct: 566 MPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNV 625

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
            +IR +M +  + K PG + IE    +H+F  GD THPQ  +I  ML  ++ KL++ GY+
Sbjct: 626 LEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYV 685

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P T+    D+DEE K   L+ HSEKLA+AFGLI     T IR+ KNLR+C DCH+ +K +
Sbjct: 686 PTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLI 745

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S    R I+VRD +RFHHF+ GACSC D+W
Sbjct: 746 SKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 195/435 (44%), Gaps = 66/435 (15%)

Query: 65  SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH---ALFNGMKER 121
           S L SC+     +Q+ +Q +  G +T+   A++L+   +    L   H    +FN ++  
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67

Query: 122 DSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           ++ +W+ ++     + +  +     ++ F+    + DSYT P +++ C  R     GR +
Sbjct: 68  NTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQL 127

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-------- 232
           H   + SG D D +V   L+++YA C  +  AR++F++ P  DLV+W  ++         
Sbjct: 128 HAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEV 187

Query: 233 --ANKFL-----LDVILGTAVIDMYAKCGSIDSAREIFD--RMRQKNVISWSAMIAAYGY 283
             A +        + I   ++I ++ + G ++ AR IF+  R R+++++SWSAM++ Y  
Sbjct: 188 EEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQ 247

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG------------------ 325
           +  G++AL LF  M  S V  + +  VS L ACS    VE G                  
Sbjct: 248 NEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSL 307

Query: 326 ----LRLFSS---------MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
               + L+SS         ++DD     D+  +  M+    R G + +A  L  SM  EK
Sbjct: 308 KNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMP-EK 366

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA-------NAGRWQ 425
           D   W A++     H+    A +A    ++     P    L+S + A       + G+W 
Sbjct: 367 DVVSWSAMISGYAQHECFSEA-LALFQEMQLHGVRPDETALVSAISACTHLATLDLGKW- 424

Query: 426 DVAKIRDLMTRRRLK 440
               I   ++R +L+
Sbjct: 425 ----IHAYISRNKLQ 435


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/554 (37%), Positives = 295/554 (53%), Gaps = 82/554 (14%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIY------ALHKALT 109
           D   F S L +C  + Q+   ++VH  +   G  +NL V N L+ +Y       + + L 
Sbjct: 126 DEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLF 185

Query: 110 D-------------------------AHALFNGMKERDSVSWSVMVGGFSKVADFINCFE 144
           D                         A  +F+GM E++ VSWS M+ G+++   + +  E
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245

Query: 145 TFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
            FR+     G+  +  TL  V+ AC     + +G+ IH  + +                 
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRR----------------- 288

Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                                         NK  + + LG A+ DMYAKCG +  A+ +F
Sbjct: 289 ------------------------------NKIEVGLFLGNALADMYAKCGCVLEAKGVF 318

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             M +++VISWS +I     +G   +A + F  M+   + PN I+F+ LL AC+H GLV+
Sbjct: 319 HEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVD 378

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +GL  F  M   + + P ++HY C+VDLL RAGRLD+A  LI SM ++ +  +WGALLG 
Sbjct: 379 KGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 438

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
           CRI+K+ +  E     +LE    + G  V L+NVYA+ GR  D A  R  M   +  K P
Sbjct: 439 CRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTP 498

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G +WIE+ N +++F +GDS+HPQS  IY M+  L  K+++AGY P T+  +H++DEE K 
Sbjct: 499 GCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKE 558

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L +HSEKLA+AFGLI T EGT IRI+KNLRVC DCH  IK +S I  R I+VRD +RF
Sbjct: 559 DALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRF 618

Query: 564 HHFEGGACSCRDYW 577
           HHF+ G CSC DYW
Sbjct: 619 HHFKDGKCSCNDYW 632



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDR-MRQKNVISWSAMIAAYGYHGQGKKALDLF--PMM 297
           I+    I + +  G++  +  IF+  +   N+ +++A++ A+  H      +  F   ++
Sbjct: 59  IIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLV 118

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           L +   P+  TF S+L AC+    V EG ++   +   +    ++     +VDL  + G 
Sbjct: 119 LPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFV-TKYGCESNLFVRNSLVDLYFKVGC 177

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
              A KL + M V +D   W  L+        VD A M    ++E+ 
Sbjct: 178 NCIAQKLFDEMVV-RDVVSWNTLISGYCFSGMVDKARMVFDGMMEKN 223


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 200/556 (35%), Positives = 310/556 (55%), Gaps = 56/556 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H   V  G  T L VA+ L  +Y+    L++A  +F+ M ++D+V+W+ M+ G++K  
Sbjct: 62  QLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNG 121

Query: 138 DFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  +FR+  R G+   D +    V+ A    KD  + + IH  V K+G +++  V 
Sbjct: 122 SLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVR 181

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA---------------------- 233
            AL+DMYAK   ++ A ++    P   ++V+ T MI                        
Sbjct: 182 NALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGV 241

Query: 234 --NKFLL------------------------------DVILGTAVIDMYAKCGSIDSARE 261
             N+F                                D  +G+ ++DMY KCG I  + +
Sbjct: 242 EPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQ 301

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F+ +  +  I+W+A+I  +  HG G++A+  F  M+ S + PN I FVSLL ACSH GL
Sbjct: 302 LFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGL 361

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V+EGL+ F SM +   + P  +HY+C++D  GRAGRLDEA K I  M ++ +   W +LL
Sbjct: 362 VDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLL 421

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+  + +L E+AA++L++ +P N G +V LS +YA+ G+W+DV  +R LM   R+KK
Sbjct: 422 GACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKK 481

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           +PG++W++   K H F   D +HPQ ++IY  L  L+ +++  GYIPDT+F   ++++  
Sbjct: 482 LPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIA 541

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSE++A+AF LI+ P    I + KNLR+C DCH+  K +  + RR IIVRD +
Sbjct: 542 KERILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNS 601

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC DYW
Sbjct: 602 RFHHFVNGRCSCGDYW 617



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 58/320 (18%)

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M  R++VSW+ +V G S+     +    F    R G+    + L    RA       + G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------ 231
             +H + ++ G D + FV + L DMY+KC ++ +A ++FDQMP +D V WT MI      
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 232 -------------------GANK------------------------------FLLDVIL 242
                              GA++                              F L+V +
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 243 GTAVIDMYAKCGSIDSAREIFD-RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
             A+IDMYAK   ++SA  +        NV+S ++MI  Y      ++AL ++  +    
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 240

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN  TF S++  C+   L+E+G +L + +     +R      T +VD+ G+ G +  +
Sbjct: 241 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST-LVDMYGKCGLISLS 299

Query: 362 LKLIESMSVEKDEGLWGALL 381
           ++L   +    D   W A++
Sbjct: 300 MQLFNEIEYRTDIA-WNAVI 318


>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
 gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
          Length = 401

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/345 (50%), Positives = 243/345 (70%), Gaps = 1/345 (0%)

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
            KF ++  + ++++DMY+ CGS++ A ++FD  + K+V+ W+AMI A G HG GK+A+ +
Sbjct: 57  GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYI 116

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  ML + V P+ ++F++LLYACSH+ LV+EG      M   + ++P  +HY C+VDLLG
Sbjct: 117 FKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLG 176

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           R+G+ +EA K I+SM +E    +W ALLGACRIHKN +LA +A   LLE +P NPG+YVL
Sbjct: 177 RSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVL 236

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           +SNV+A  G+W +V +IR  MT + L+K P  +WIE+ N +H F+  D +H  S+ I+  
Sbjct: 237 VSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLK 296

Query: 474 LVTLSEKLELAG-YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
           L  ++EKL   G Y+ DT+F LHDV EE K+  L+ HSE+LAI+FGLI+T  GT +RI K
Sbjct: 297 LAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAK 356

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVCGDCH F K VS +  R I+VRDANRFHHF GG CSC D+W
Sbjct: 357 NLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 401


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 197/487 (40%), Positives = 284/487 (58%), Gaps = 54/487 (11%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N L+  Y     ++ A  LF+GM+ERD VSWS ++ G+ +V  F+   + F + ++ G +
Sbjct: 185 NTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPK 244

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
            + YTL   + AC +   +  G+ IH  + K  + +++ + A                  
Sbjct: 245 PNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLA------------------ 286

Query: 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF--DRMRQKNVIS 273
                                        ++IDMYAKCG I+SA  +F   +++QK V  
Sbjct: 287 -----------------------------SIIDMYAKCGEIESASRVFFEHKVKQK-VWL 316

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+AMI  +  HG   +A+++F  M   ++ PN++TF++LL ACSH  +VEEG   F  M 
Sbjct: 317 WNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMV 376

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            D+A+ P+++HY CMVDLL R+G L EA  +I SM +  D  +WGALL ACRI+K+++  
Sbjct: 377 SDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERG 436

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL--MTRRRLKKIPGWTWIEVE 451
               + +    P + G +VLLSN+Y+ +GRW +   +R+   ++R R KKIPG + IE++
Sbjct: 437 YRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEARILREKNEISRDR-KKIPGCSSIELK 495

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV-DEEVKVGNLYSHS 510
              HQF VGD +HPQS EIY  L  ++ KL+ AGY+P+    LHD+ DEE K   L  HS
Sbjct: 496 GTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHS 555

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGL+ T  GT IRI+KNLRVCGDCH   K +S +  RVIIVRD  R+HHFE G 
Sbjct: 556 EKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGI 615

Query: 571 CSCRDYW 577
           CSC+DYW
Sbjct: 616 CSCKDYW 622



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 164/327 (50%), Gaps = 20/327 (6%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            +S + SC+++ QI+Q HAQ++    +++ + ANKLL + A   +L+ AH LF+ + + D
Sbjct: 19  LVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC-ASLSYAHKLFDQIPQPD 77

Query: 123 SVSWSVMVGGFSKVADFI-NCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
              ++ M+   S       N    FR   +  G+  + Y+  F   AC +   +  G  +
Sbjct: 78  LFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQV 137

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
               +K GL+ + FV  AL+ MY K  ++ +++++F     RDL +W  +I A       
Sbjct: 138 RIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAA------- 190

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
                    Y   G++  A+E+FD MR+++V+SWS +IA Y   G   +ALD F  ML  
Sbjct: 191 ---------YVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQI 241

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
              PN  T VS L ACS+   +++G +   +      ++ + +    ++D+  + G ++ 
Sbjct: 242 GPKPNEYTLVSALAACSNLVALDQG-KWIHAYIGKGEIKMNERLLASIIDMYAKCGEIES 300

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIH 387
           A ++     V++   LW A++G   +H
Sbjct: 301 ASRVFFEHKVKQKVWLWNAMIGGFAMH 327


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/582 (35%), Positives = 318/582 (54%), Gaps = 68/582 (11%)

Query: 63  FISSLLSCRNIFQIRQVHAQIV--AGGTLTNLIVANKLLYIYALHKALTDAH-----ALF 115
            ++ L  C ++  + Q+HA  V   GG   +     +LL +     A   AH      +F
Sbjct: 31  LLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVF 90

Query: 116 NGMKERDSVSW-SVMVGGFSKVADFINCFE-TFREFIRC---GMQLDSYTLPFVIRACRD 170
           + +     V W + ++ G+++      C E   R F+R    G+  D+YT   +++AC  
Sbjct: 91  DRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACAS 150

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
            +    GR  H + +K+G    ++V   L++MYA+C  +  AR +FD+M    +V++  M
Sbjct: 151 ARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAM 210

Query: 231 IGAN----------------------------------------------------KFLL 238
           I A+                                                    K  L
Sbjct: 211 ITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRL 270

Query: 239 D--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
           D  V + TA+IDMYAKCGS++ A  +F  M  ++  +WS M+ AY  HG G++A+ +F  
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEE 330

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    + P+ +TF+ +LYACSH+G+V EGL+ F SM  ++ +   +KHY C+ DLL R+G
Sbjct: 331 MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLLARSG 389

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           +L+ A K I+ + ++    LW  LL AC  H +VD+ +   + +LE    + G YV+ SN
Sbjct: 390 QLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           + AN GRW+++  +R LM+ + + K+PG + IE++N +H+F  GD +HP S+E  RM+  
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509

Query: 477 LSEKLELAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLR 535
           + E+L+L GY+P+T+   H ++ EE K  +L  HSEKLAI+FGL+ T  GT +RI+KNLR
Sbjct: 510 VIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLR 569

Query: 536 VCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           VC DCHS  K VS +  R II+RD NRFHHFE G CSC DYW
Sbjct: 570 VCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611


>gi|222629025|gb|EEE61157.1| hypothetical protein OsJ_15124 [Oryza sativa Japonica Group]
          Length = 383

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 174/345 (50%), Positives = 243/345 (70%), Gaps = 1/345 (0%)

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
            KF ++  + ++++DMY+ CGS++ A ++FD  + K+V+ W+AMI A G HG GK+A+ +
Sbjct: 39  GKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYI 98

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  ML + V P+ ++F++LLYACSH+ LV+EG      M   + ++P  +HY C+VDLLG
Sbjct: 99  FKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLG 158

Query: 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413
           R+G+ +EA K I+SM +E    +W ALLGACRIHKN +LA +A   LLE +P NPG+YVL
Sbjct: 159 RSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVL 218

Query: 414 LSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRM 473
           +SNV+A  G+W +V +IR  MT + L+K P  +WIE+ N +H F+  D +H  S+ I+  
Sbjct: 219 VSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLK 278

Query: 474 LVTLSEKLELAG-YIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
           L  ++EKL   G Y+ DT+F LHDV EE K+  L+ HSE+LAI+FGLI+T  GT +RI K
Sbjct: 279 LAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAK 338

Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           NLRVCGDCH F K VS +  R I+VRDANRFHHF GG CSC D+W
Sbjct: 339 NLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 383


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 304/537 (56%), Gaps = 33/537 (6%)

Query: 67  LLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           L +C  +  I    ++H+     G  +++ V   L+  YA    L +A  LF+ M  RD 
Sbjct: 116 LKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDV 175

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           V+W+ M+ G S      +  +   +    G+  +S T+  V+  C   + ++  R I D+
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC---QCLLYARKIFDV 232

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGA------ 233
           +   G+  ++   +A++  Y     + +A  +F  M       DL T   ++ A      
Sbjct: 233 M---GVR-NEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAA 288

Query: 234 -------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                          F  D ++  A+IDMY+KCG I  ARE+F+RM + +++SW+AMI  
Sbjct: 289 LQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIG 348

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           YG HG G +AL LF  +L+  + P+ ITF+ LL +CSH+GLV EG   F +M  DF++ P
Sbjct: 349 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVP 408

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            ++H  CMVD+LGRAG +DEA   I +M  E D  +W ALL ACRIHKN++L E  +K +
Sbjct: 409 RMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 468

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
               P++ G++VLLSN+Y+ AGRW D A IR       LKKIPG +WIE+   +H F  G
Sbjct: 469 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGG 528

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D +H Q  +I R L  L  +++  GY  + +F   DV+EE K   L  HSEKLAIAFG++
Sbjct: 529 DQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGIL 588

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
               G  I + KNLRVCGDCH+ IK ++ IT+R I VRDANRFHHF+ G C+C D+W
Sbjct: 589 NLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 161/345 (46%), Gaps = 26/345 (7%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            + + +  +++ + +++H   +   +  +  V +KL  +Y     +  A  LF+ +    
Sbjct: 14  LLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPS 73

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            + W+ ++  ++    F    + +   +  G++ + YT PFV++AC     I  G  IH 
Sbjct: 74  VILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS 133

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL----- 237
                GL+ D FVC ALVD YAKC ++ +A++LF  M  RD+V W  MI           
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDD 193

Query: 238 -LDVIL----------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
            + +I+           + ++ +   C  +  AR+IFD M  +N +SWSAMI  Y     
Sbjct: 194 AVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDC 253

Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS----MWDDFAVRPDV 342
            K+ALD+F MM  S + P+  T + +L ACSH   ++ G   F S    +   FA   D 
Sbjct: 254 MKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG---FCSHGYLIVRGFAT--DT 308

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
                ++D+  + G++  A ++   M    D   W A++    IH
Sbjct: 309 LICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 352


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 294/551 (53%), Gaps = 56/551 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q++++HA ++  G      +  +LL    L   +  A  +F+ M +     W+ +  G+ 
Sbjct: 26  QLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYV 85

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +          +++    G++ D +T PFV++A      +  G  +H  VLK+G +    
Sbjct: 86  RNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGI 145

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------NKFLLD- 239
           V   LV MY K   +  A  LF+ M  +DLV W   I                NK   D 
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFIAVCVQTGNSAIALEYFNKMCADA 205

Query: 240 ---------------------------------------VILGTAVIDMYAKCGSIDSAR 260
                                                  +I+  A +DM+ KCGS ++AR
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKEEIECNIIVENARLDMHLKCGSTEAAR 265

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +FD M+Q+NV+SWS MI  Y  +G   +AL LF MM +  + PN +TF+ +L ACSH G
Sbjct: 266 VLFDDMKQRNVVSWSTMIVGYAMNGDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAG 325

Query: 321 LVEEGLRLFSSM--WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           LV EG R FS M   +D  + P  +HY CMVDLLGR+G L+EA + I+ M VE D G+WG
Sbjct: 326 LVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWG 385

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALLGAC +H+++ L +  A  L+E  P    ++VLLSN+YA AG+W  V K+R  M +  
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
            KK+  ++ +E + KIH F+ GD +HPQS+ IY  L  + +K+   GY+PDT    HDV+
Sbjct: 446 TKKVAAYSSVEFDGKIHFFNRGDISHPQSKAIYEKLDEILKKIRNMGYVPDTGSVFHDVE 505

Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
            E K  +L  HSEKLAIAFGLI    G  IR+MKNLR C DCH F K VS +T R II+R
Sbjct: 506 MEEKESSLSHHSEKLAIAFGLINGRAGHPIRVMKNLRTCDDCHVFSKFVSRLTSREIIMR 565

Query: 559 DANRFHHFEGG 569
           D NRFHHF  G
Sbjct: 566 DKNRFHHFRNG 576


>gi|293334473|ref|NP_001170726.1| uncharacterized protein LOC100384813 [Zea mays]
 gi|238007188|gb|ACR34629.1| unknown [Zea mays]
          Length = 329

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 168/329 (51%), Positives = 232/329 (70%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY+KCG +D+AR +FD M ++N +SW++M++ YG HG+GK+ALD+F  M  +  +P+ I+
Sbjct: 1   MYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDIS 60

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+ LLYACSH+G+V++GL  F  M  D+ V    +HY C++DLL R GRLD+A K I+ M
Sbjct: 61  FLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEM 120

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
            +E    +W ALL ACR+H NV+LAE A   L+  + +N G Y L+SN+YANA RW+DVA
Sbjct: 121 PMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVA 180

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIP 488
           +IR LM +  +KK PG +W++ +     F VGD +HP S EIY +L  L  ++++ GY+P
Sbjct: 181 RIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVP 240

Query: 489 DTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVS 548
           +TNF LHDVD+E K   L  HSEKLA+A+GL+ T  G  IRI KNLRVCGDCHS   ++S
Sbjct: 241 ETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYIS 300

Query: 549 AITRRVIIVRDANRFHHFEGGACSCRDYW 577
            I    IIVRD++RFHHF+ G+CSC  YW
Sbjct: 301 KIVDHEIIVRDSSRFHHFKNGSCSCGGYW 329



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+ M +R+ VSW+ M+ G+          + F +  + G   D  +   ++ AC  
Sbjct: 11  ARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSH 70

Query: 171 RKDIVMGRLIHDIVLKSGLDI----DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLV 225
              +  G    DI ++   D+    + + C  ++D+ A+C  +D A +   +MP     V
Sbjct: 71  SGMVDQGLNYFDI-MRRDYDVVASAEHYAC--VIDLLARCGRLDKAWKTIQEMPMEPSAV 127

Query: 226 TWTVMIGANKFLLDVILGTAVID 248
            W  ++ A +   +V L    ++
Sbjct: 128 IWVALLSACRVHSNVELAEYALN 150


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 216/585 (36%), Positives = 321/585 (54%), Gaps = 65/585 (11%)

Query: 57   SVDPKFF--ISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDA 111
            S+ P  F  IS L SC  +  +   +Q+H   V  G   +  V+N L+ +Y     +++ 
Sbjct: 479  SIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSEC 538

Query: 112  HALFNGMKERDSVSWSVMVGGF-SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
              +FN M   D VSW+ ++G   S  A      + F   ++ G+  +  T    + A   
Sbjct: 539  WEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTP 598

Query: 171  RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-------- 222
               + +G+ IH ++LK G+  D  V  AL+  YAK   +D   +LF +M  R        
Sbjct: 599  LSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNS 658

Query: 223  ----------------------------DLVTWTVMIGA-------------NKFLL--- 238
                                        D  T+++++ A             + F L   
Sbjct: 659  MISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSH 718

Query: 239  ---DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
               DV++ +A++DMY+KCG ID A ++F  M QKN  SW++MI+ Y  HG G+KAL++F 
Sbjct: 719  LESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFE 778

Query: 296  MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
             M  S   P+ +TFVS+L ACSH GLVE GL  F  M +D+ + P ++HY+C++DLLGRA
Sbjct: 779  EMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRA 837

Query: 356  GRLDEALKLIESMSVEKDEGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQNPGHYV 412
            G LD+  + ++ M ++ +  +W  +L AC+  K+   +DL   A++ LLE +PQNP +YV
Sbjct: 838  GELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYV 897

Query: 413  LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
            L S  +A  GRW+D AK R  M    +KK  G +W+ + + +H F  GD +HP ++EIY 
Sbjct: 898  LSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYE 957

Query: 473  MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
             L  L +K+  AGY+P T + LHD++EE K   L  HSEKLA+AF L  +  G  IRIMK
Sbjct: 958  KLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMK 1017

Query: 533  NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            NLRVCGDCH+  +++S I  R II+RD+ RFHHF+ G CSC DYW
Sbjct: 1018 NLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 183/411 (44%), Gaps = 82/411 (19%)

Query: 77  RQVHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R+VHA ++ AG     + V+N L+ +YA   A+  A  +F  M+ RD +SW+ ++    +
Sbjct: 402 REVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQ 461

Query: 136 VADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
                N +        C M+ +S     +     + +C     +  G+ +H   +K GL 
Sbjct: 462 -----NGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLY 516

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------- 233
           +D  V  ALV MY +C  + +  ++F+ M   D+V+W  ++G                  
Sbjct: 517 LDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSN 576

Query: 234 --------NK-----FL-----LDVI-LGTAVIDMYAKCG-----SIDSA---------- 259
                   NK     FL     L V+ LG  +  +  K G     ++D+A          
Sbjct: 577 MMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGD 636

Query: 260 ----REIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
                 +F RM  +++ ISW++MI+ Y Y+G  ++A+D   +M+ S  + +  TF  +L 
Sbjct: 637 VDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLN 696

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           AC+    +E G+ + +     F +R     DV   + +VD+  + GR+D A K+  SMS 
Sbjct: 697 ACASVAALERGMEMHA-----FGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMS- 750

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP--QNPGHYVLLSNVYA 419
           +K+E  W +++     H    L   A +   E Q   ++P H   +S + A
Sbjct: 751 QKNEFSWNSMISGYARH---GLGRKALEIFEEMQESGESPDHVTFVSVLSA 798



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 167/414 (40%), Gaps = 72/414 (17%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            +H ++V  G   +L +AN L+  YA    L  A  +F+GM  R++VSW+ ++ G     
Sbjct: 86  SLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 138 DFINCFETFREFIR--CGMQLDSYTLPFVIRACRDRKDIVMGRL--IHDIVLKSGLDIDQ 193
              + F  FR  +R   G +  S+T   V+RAC+D     +G    +H +V K+    + 
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNT 205

Query: 194 FVCAALVDMYAKCKVIDD--ARQLFDQMPTRDLVTWTVMIGANKFLLDVI---------- 241
            VC AL+ MY  C V     A+++FD  P RDL+TW  ++       D I          
Sbjct: 206 TVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQ 265

Query: 242 --------------LGTAVIDMYAKCGSIDSAREIFDR---------------------- 265
                          G+ +   Y    S+    ++F R                      
Sbjct: 266 YDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFAR 325

Query: 266 -------------MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
                        ++++N ++ + +IA       G+ A ++F M        N  T+V L
Sbjct: 326 HGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF-MGARDSAAVNVDTYVVL 384

Query: 313 LYACSHTGLVEEGLR----LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           L A +     E+GLR    + + +     +   +     +V++  + G +D+A ++ + M
Sbjct: 385 LSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLM 444

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
              +D   W  ++ A   +   + A M    L+ +    P ++  +S + + AG
Sbjct: 445 EA-RDRISWNTIITALDQNGYCE-AAMMNYCLMRQNSIGPSNFAAISGLSSCAG 496



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 163/386 (42%), Gaps = 74/386 (19%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
              ++ LS  ++  + Q+  +++  G  ++L V + L+  +A H  L +A  ++ G+KER
Sbjct: 283 LITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKER 342

Query: 122 DSVSWSVMVGGFSKVADFINCFETF---REFIRCGMQLDSYT--LPFVIRACRDRKDIVM 176
           ++V+ + ++ G  K        E F   R+     + +D+Y   L  +       + +  
Sbjct: 343 NAVTLNGLIAGLVKQQHGEAAAEIFMGARD--SAAVNVDTYVVLLSAIAEFSTAEQGLRK 400

Query: 177 GRLIHDIVLKSGLDIDQF-VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
           GR +H  VL++G    +  V   LV+MYAKC  ID A ++F  M  RD ++W  +I A  
Sbjct: 401 GREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALD 460

Query: 234 -NKFLLDVILGT-------------AVIDMYAKC---GSIDSAREIFDRMRQKNVISW-- 274
            N +    ++               A I   + C   G + + +++       + + W  
Sbjct: 461 QNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQL-----HCDAVKWGL 515

Query: 275 -------SAMIAAYGYHGQGKKALDLF-----------------------PM-------- 296
                  +A++  YG  G+  +  ++F                       P+        
Sbjct: 516 YLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFS 575

Query: 297 -MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M+ S ++PN++TFV+ L A +   ++E G ++ S M     V  D      ++    ++
Sbjct: 576 NMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVML-KHGVTEDNAVDNALMSCYAKS 634

Query: 356 GRLDEALKLIESMSVEKDEGLWGALL 381
           G +D   +L   MS  +D   W +++
Sbjct: 635 GDVDSCERLFSRMSGRRDAISWNSMI 660


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/529 (35%), Positives = 309/529 (58%), Gaps = 19/529 (3%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           PD     SV P     S+    N+   RQ+H  ++  G L +  V + +L +Y     + 
Sbjct: 250 PDQVTVSSVLP-----SVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVY 304

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC- 168
               LF+  +  ++   +  + G S+        E F  F    M+L+  +   +I  C 
Sbjct: 305 GIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCA 364

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
           ++ KDI    L  ++ + +G+  ++    +++        +   R             + 
Sbjct: 365 QNGKDIEALELFREMQV-AGVKPNRVTIPSMLPACGNIAALGHGRSTHG---------FA 414

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
           V +     L DV +G+A+IDMYAKCG I  ++ +F+ M  KN++ W++++  Y  HG+ K
Sbjct: 415 VRV---HLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAK 471

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           + + +F  ++ +R+ P+ I+F SLL AC   GL +EG + F+ M +++ ++P ++HY+CM
Sbjct: 472 EVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCM 531

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           V+LLGRAG+L EA  LI+ +  E D  +WGALL +CR+  NVDLAE+AA+ L   +P+NP
Sbjct: 532 VNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENP 591

Query: 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSE 468
           G YVL+SN+YA  G W +V  IR+ M    LKK PG +WI+V+NK++     D +HPQ +
Sbjct: 592 GTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQID 651

Query: 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI 528
           +I   +  +SE++  +G+ P+ +F L DV+E+ +   L+ HSEKLA+ FGL+ TP+GT +
Sbjct: 652 QITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPL 711

Query: 529 RIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +++KNLR+CGDCH+ IK +S+   R I +RD NRFHHF+ G CSC D+W
Sbjct: 712 QVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 138/297 (46%), Gaps = 21/297 (7%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q HA+I+  G   +  ++ KL+  Y+ +    DA  +   + +    S+S ++   +K  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            F      F      G+  D++ LP + + C +      G+ IH +   SGLD+D FV  
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
           +L  MY +C  + DAR++FD+M  +D+VT + ++                  YA+ G ++
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCG----------------YARKGCLE 199

Query: 258 SAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
               I   M     + N++SW+ +++ +   G  K+A+ +F  M      P+++T  S+L
Sbjct: 200 EVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVL 259

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +   +  +  G ++   +     ++ D    + M+D+ G++G +   +KL +   +
Sbjct: 260 PSVGDSENLNMGRQIHGYVIKQGLLK-DKCVISAMLDMYGKSGHVYGIIKLFDEFEM 315


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/554 (37%), Positives = 304/554 (54%), Gaps = 63/554 (11%)

Query: 65  SSLLSCR----NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           ++LLSC     ++   R + A + A  T  N+   N +L   +   A+ +A A+F  M  
Sbjct: 86  NTLLSCHFAAGDVRGARDLFAAMPA--TARNVTSWNTMLSGLSRSGAVGEARAVFLAMPA 143

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R+S+SW+ MV  F+   D     E F +                     D+++ V+   +
Sbjct: 144 RNSISWNAMVSCFAHAGDMCAAEECFED-------------------APDKENAVLWTAM 184

Query: 181 HDIVLKSG-----------LDIDQFVC-AALVDMYAKCKVIDDARQLFDQM-------PT 221
               + SG           + +   V   A+V  Y K    +DA  +F  M       P 
Sbjct: 185 VSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPN 244

Query: 222 RDLVTWTVMIGAN----------------KFLLD--VILGTAVIDMYAKCGSIDSAREIF 263
              ++ +V++G +                K  L   V  GT+++ MY KCG +D A ++F
Sbjct: 245 ESTLS-SVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLF 303

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             MR ++VI+W+AMI+ Y +HG G++A++LF  M S  V PN ITFV++L AC HTG+ +
Sbjct: 304 SEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCD 363

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            G++ F  M + + +   V HY+CMVDLL RAG L+ A+ LI SM  +     +G LL A
Sbjct: 364 FGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNA 423

Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            R++KN++ AE AA  L+E+ PQN G YV L+N+YA A +W DV+++R  M    + K P
Sbjct: 424 SRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTP 483

Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
           G++W+E+   IH F   D  HPQ   I+  L  L E+++  GY+PD +F LHDVDE +KV
Sbjct: 484 GYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKV 543

Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
             L  HSEKLAIAFGL++T  G  +RI KNLRVCGDCH+  K +S I  R II+RD  RF
Sbjct: 544 QMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRF 603

Query: 564 HHFEGGACSCRDYW 577
           HHF  G CSC DYW
Sbjct: 604 HHFRSGHCSCGDYW 617



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 25/184 (13%)

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGAN---------KFLLDVILGTA--------VIDM 249
           +++ DAR LFD++P  D V++  ++  +         + L   +  TA        ++  
Sbjct: 65  RLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSG 124

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
            ++ G++  AR +F  M  +N ISW+AM++ + + G    A + F          N + +
Sbjct: 125 LSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKE---NAVLW 181

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
            +++     +G VE+ ++ F +M     VR  V  +  +V    +  R ++AL + ++M 
Sbjct: 182 TAMVSGYMDSGHVEKAMQFFEAM----PVRSLVS-WNAVVAGYVKNSRAEDALWVFKTMV 236

Query: 370 VEKD 373
            + D
Sbjct: 237 RDAD 240


>gi|326507562|dbj|BAK03174.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 311/579 (53%), Gaps = 65/579 (11%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTL-----TNLIVANKLLYIYA-LHKALTDAHALFN 116
            + +L + R + + +Q+H  ++ GG L     ++ ++A+ LL  YA          A  +
Sbjct: 21  LLVALSAARALPKGQQLHGHLLKGGHLPAVASSHALLAHHLLTFYARCSLPELSLRAFLD 80

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
                   +WS ++  F++       F+ FR  +  G+     ++P   +A     D   
Sbjct: 81  LPASPSPAAWSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPPAAKAVAAAADSSR 140

Query: 177 GRL----IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232
             L    +H +  K+    D FV +A++DMYAKC  + DAR++FD+MP R++V+W+ +IG
Sbjct: 141 PPLAPHALHGLASKTPFAGDVFVGSAVLDMYAKCGNLSDARRVFDEMPERNVVSWSALIG 200

Query: 233 A------------------------NKFLLDVIL-------------------------- 242
                                    N F +  I+                          
Sbjct: 201 GYADAGMHPSALCIFRSALEEAVQVNDFTVSCIVRVCAAATLFELGAQVHARSIKTALDA 260

Query: 243 ----GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
               G++++ +Y+KCG +D A  +F    ++N+  W+A++ A   HG    A + F  M 
Sbjct: 261 SPFVGSSLVSLYSKCGLVDCAYRVFSAAPERNLGIWNAVLIASAQHGHTSTAFERFTKMQ 320

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
            +   PN ITF+ LL ACSH GLV+EG R FS M  ++ + P+V+HY  MVDLLGR GR+
Sbjct: 321 HAGFRPNFITFLCLLTACSHAGLVDEGKRYFSLM-KEYRIEPEVEHYAAMVDLLGRVGRI 379

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
            EAL LIESM +E  + +WGALL ACR+ K+ D A +AAK L E   ++ G ++LLS+ Y
Sbjct: 380 TEALDLIESMPMEPPDSVWGALLMACRMFKDADTAAIAAKRLFETGSRSSGAHMLLSSTY 439

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A AGR  D A  R  M    ++K  G +W+E   ++H F      HP+S EIY +L  + 
Sbjct: 440 AAAGRHVDAALARKAMRDAGIRKETGLSWLEAAGEVHTFVSNCRRHPRSNEIYNVLEKVG 499

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           EK+ +AGY+ DT+  + DVD + K  +L  HSE+LAIA GL+  PEG  IR+MKNLRVC 
Sbjct: 500 EKMAVAGYVADTSAVVKDVDRDEKCASLGYHSERLAIALGLLIVPEGVPIRVMKNLRVCD 559

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+ +K++S  T RV+++RD  RFH FE G CSC D+W
Sbjct: 560 DCHNAVKYLSKCTGRVVVLRDNRRFHRFEDGLCSCGDFW 598


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 312/575 (54%), Gaps = 58/575 (10%)

Query: 61  KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           ++ +S+ LS     R+    RQ H   V  G   +  V N +L++Y     + DA  +F 
Sbjct: 108 EYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFE 167

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +   D  +++ M+ GF  + +F       R  +    Q D  +   V+  C   K++++
Sbjct: 168 NVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLL 227

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G  +H   LK  L+ + +V +ALVDMY KC    DA   F+ +P +++V+WT ++ A   
Sbjct: 228 GCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQ 287

Query: 234 ---------------------NKFLLDVILGT---------------------------- 244
                                N+F   V L +                            
Sbjct: 288 NERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSV 347

Query: 245 --AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             A+++MY+K GSI  A  +F  M  ++V+SW+++I  Y +HG  ++A+ +F  ML + +
Sbjct: 348 CNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEI 407

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
           +P+ +TFV +L AC+  GLV+EGL   + M  +  ++P  +HYTCMV LL RAGRLDEA 
Sbjct: 408 VPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAE 467

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           + I S  +  D   W +LL +C+++KN  L    A+ +L+ +P + G YVLLSN+YA A 
Sbjct: 468 QFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLSNMYAKAN 527

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW  V K+R LM  R ++K PG +WI+V +++H F+  D  H    +I   L  L  +++
Sbjct: 528 RWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLKELIGQIK 587

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
           + GY+P+    LHDV+ E K  +L  HSEK+A+AFGLI +PEG  IRIMKNLR+C DCH 
Sbjct: 588 VIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIRIMKNLRICDDCHV 647

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IK +S +TRR I+VRD  RFH  + G CSC DYW
Sbjct: 648 AIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 73/353 (20%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +HAQ++      ++I  N L+  Y     L  A  +F+ M  R++VS ++++ G++  
Sbjct: 31  KAIHAQMIRAAHF-DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASA 89

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               +     +        L+ Y L   + A    +   MGR  H   +KSGL    +VC
Sbjct: 90  GRHSDALALLKA---ADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVC 146

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL------------------- 237
            A++ MY +C  ++DA ++F+ +   D+  +  MI  N FL                   
Sbjct: 147 NAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMI--NGFLDLGEFDGSIRIVRSMVGEV 204

Query: 238 ------------------LDVILGTAV-------------------IDMYAKCGSIDSAR 260
                              +++LG  V                   +DMY KC     A 
Sbjct: 205 EQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAH 264

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
             F+ + +KNV+SW+A++ AY  + + + AL LF  +    V PN  T+   L +C+   
Sbjct: 265 SAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLA 324

Query: 321 LVEEGLRLFSSM-----WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            ++ G  L +S      W   +V         ++++  ++G + +A ++  SM
Sbjct: 325 ALKNGNALSASAMKTGHWGALSV------CNALMNMYSKSGSIHDAWRVFLSM 371


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 305/576 (52%), Gaps = 62/576 (10%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            IS+L SC ++  I   +Q H + +  G   ++ V+N LL +YA    L +   +F+ M 
Sbjct: 207 LISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWML 266

Query: 120 ERDSVSWSVMVGGFSKV-ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
           ERD VSW+ ++G  +   A      E F E +R G   +  T   ++          +  
Sbjct: 267 ERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSH 326

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAK--------------------------------- 205
            IH ++LK  +  D  +  AL+  Y K                                 
Sbjct: 327 QIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHN 386

Query: 206 ---CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL-------------------DVILG 243
              CK +D    +  +    D  T+  ++ A   +                    DV++G
Sbjct: 387 ELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIG 446

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
           +A++DMY+KCG ID A   F+ M  +N+ SW++MI+ Y  HG G  AL LF  M  S  L
Sbjct: 447 SALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQL 506

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ ITFV +L ACSH GLV+EG   F SM + + + P V+HY+CMVDLLGRAG LD+   
Sbjct: 507 PDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIEN 566

Query: 364 LIESMSVEKDEGLWGALLGAC--RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            I  M ++ +  +W  +LGAC     +  +L   AA+ L    PQN  +YVLLSN+YA+ 
Sbjct: 567 FINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASG 626

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           G+W+D+A+ R  M    +KK  G +W+ +++ +H F  GD++HP+   IY  L  L +K+
Sbjct: 627 GKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKI 686

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
             AGY+P   F L+D++ E K   L  HSEKLA+AF ++    G  IRIMKNLRVCGDCH
Sbjct: 687 RDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAF-VLTRNSGLPIRIMKNLRVCGDCH 745

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S  K++S +  R I++RD+NRFHHFE G CSCRDYW
Sbjct: 746 SAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 157/365 (43%), Gaps = 66/365 (18%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139
           H  ++  G  ++L + N L+ +Y        A  LF+ M +R+ V+W+ ++ G+++    
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 140 INCFETFREFIRCGMQLDSYTLPFVIRACRD-----RKDIVMGRLIHDIVLKSGL-DIDQ 193
            +     +E I  G   + +     IRAC++     RK    GR +H   +++GL D   
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRK----GRQVHGYAIRTGLNDAKV 138

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLD----------- 239
            V   L++MYAKC  ID AR +F  M  +D V+W  MI     NK   D           
Sbjct: 139 AVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKT 198

Query: 240 ---------------------VILG-------------------TAVIDMYAKCGSIDSA 259
                                ++LG                     ++ +YA+   +   
Sbjct: 199 GLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAEC 258

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQG-KKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           +++F  M +++ +SW+ +I A    G    +A+++F  M+ +   PNR+TF++LL   S 
Sbjct: 259 QKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSS 318

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
               +   ++ + +   + V+ D      ++   G++G ++   ++   MS  +DE  W 
Sbjct: 319 LSTSKLSHQIHALIL-KYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWN 377

Query: 379 ALLGA 383
           +++  
Sbjct: 378 SMISG 382



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 11/185 (5%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D+ L   +I++Y + G   SAR++FD M  +N ++W+ +I+ Y  +G  + A  +  
Sbjct: 31  FDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLK 90

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC-----MVD 350
            M+    LPNR  F S + AC  + L     R        +A+R  +          +++
Sbjct: 91  EMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHG----YAIRTGLNDAKVAVGNGLIN 146

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           +  + G +D A  +   M V+KD   W +++     +K  + A  +  S + +    P +
Sbjct: 147 MYAKCGDIDHARSVFGLM-VDKDSVSWNSMITGLDQNKCFEDAVKSYNS-MRKTGLMPSN 204

Query: 411 YVLLS 415
           + L+S
Sbjct: 205 FALIS 209


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/596 (32%), Positives = 325/596 (54%), Gaps = 79/596 (13%)

Query: 61  KFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           + + S L  C ++  I   R++H+ I +     + ++ +KL+++Y     L +   +F+ 
Sbjct: 102 RTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLPFVIRACRD--RKDI 174
           +       W++++ G++K+ +F      F+     G+ +++S    F     RD    + 
Sbjct: 162 VANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221

Query: 175 VMGRLIHDIVLKSGLD-------------------IDQFVCAALVDMYAKCKVIDDARQL 215
           ++   + + + + GLD                   ++  +   L+DMY+K   ++ A Q+
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQV 281

Query: 216 FDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL--------- 242
           F+ M  R +V+WT MI                          N   +  IL         
Sbjct: 282 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAAL 341

Query: 243 ---------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                                  A++DMY KCG++  AR +FD + +K+++SW+ MIA Y
Sbjct: 342 ERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGY 401

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
           G HG G +A+  F  M +S + P+ ++F+S+LYACSH+GL++EG   F+ M ++  + P 
Sbjct: 402 GMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPK 461

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
            +HY C+VDLL RAG L +A K I+ M +E D  +WGALL  CRI+ +V LAE  A+ + 
Sbjct: 462 SEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVF 521

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E +P+N G+YVLL+N+YA A +W++V K+R+ + RR L+K PG +WIE++ K+H F  GD
Sbjct: 522 ELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGD 581

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
           S+HP + +I  +L     +++  G+ P   + L   D+  K   L  HSEK+A+AFG+++
Sbjct: 582 SSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGILS 641

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            P G  +R+ KNLRVCGDCH   K +S + +R II+RD+NRFHHF+ G+CSCR +W
Sbjct: 642 LPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 83/371 (22%)

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           +++ +  F ++ +     E   +  +  ++L +Y    V++ C D K I  GR IH I+ 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELRTYC--SVLQLCADLKSIQDGRRIHSIIQ 128

Query: 186 KSGLDIDQFVCAALVDMYAKC--------------------------------------- 206
            + +++D  + + LV MY  C                                       
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 207 ----------KVIDDARQLFDQMPTRDLVTWTVMI----------------------GAN 234
                     + ++ AR+LFD++  RD+++W  MI                      G N
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 235 KFL-----LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
             L     +++ L   ++DMY+K G+++SA ++F+ M +++V+SW++MIA Y   G    
Sbjct: 249 TDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 308

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCM 348
           ++ LF  M    + PN IT   +L AC+    +E G  +   +  + F++   V +   +
Sbjct: 309 SVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--AL 366

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408
           VD+  + G L  A +L+  M  EKD   W  ++    +H     A +AA + +      P
Sbjct: 367 VDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGMHGYGSEA-IAAFNEMRNSGIEP 424

Query: 409 GHYVLLSNVYA 419
                +S +YA
Sbjct: 425 DEVSFISILYA 435



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 2/211 (0%)

Query: 40  MNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL 99
           M+ R+  +M  +  F  S+     + +  S   + + +++H  I+  G   +  VAN L+
Sbjct: 308 MSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALV 367

Query: 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159
            +Y    AL  A  LF+ + E+D VSW+VM+ G+            F E    G++ D  
Sbjct: 368 DMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEV 427

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           +   ++ AC     +  G    +++  +  ++      A +VD+ A+   +  A +    
Sbjct: 428 SFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKM 487

Query: 219 MPTR-DLVTWTVMIGANKFLLDVILGTAVID 248
           MP   D   W  ++   +   DV L   V +
Sbjct: 488 MPIEPDATIWGALLCGCRIYHDVKLAEKVAE 518


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 208/578 (35%), Positives = 315/578 (54%), Gaps = 94/578 (16%)

Query: 83  IVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142
           ++ G   +NL V    +++++L   +  A  +F+     + V+W+V++ G+++   +   
Sbjct: 162 VIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYE-- 219

Query: 143 FETFREFI----RCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL-DIDQFVC 196
            E+ R FI    +C  +  +S TL  ++ AC   KD+V G+ I++  +K G+ + +  + 
Sbjct: 220 -ESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILE 278

Query: 197 AALVDMYAKCKV-------------------------------IDDARQLFDQMPTR--- 222
            AL+DM+A C                                 ID AR+ FDQMP R   
Sbjct: 279 NALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYV 338

Query: 223 --------------------------------------------------DLVTWT-VMI 231
                                                             +L  W    I
Sbjct: 339 SWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYI 398

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
             NK   D  +G A+IDMY KCG+++ A++IF+ M++K+  +W+AMI     +G G++AL
Sbjct: 399 DKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEAL 458

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351
            +F  ML + V P+ IT++ ++ AC+H GLV +G   FS+M     ++P++ HY CMVDL
Sbjct: 459 TMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDL 518

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
           LGRAG L EAL++I +M V+ +  +WG+LLGACR+HKNV LAEMAA  +LE +P+N   Y
Sbjct: 519 LGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVY 578

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
           VLL N+YA   +W+++  +R +M  R +KKIPG + +E+   +++F  GD +HPQS+EIY
Sbjct: 579 VLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIY 638

Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
             L  + + L  AGY PDT+    DV EE K   LY HSEKLAIA+ LI++ +G  IRI+
Sbjct: 639 AKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIV 698

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGG 569
           KNLR+C DCH     VS +  R +IVRD  RFHHF  G
Sbjct: 699 KNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 182/414 (43%), Gaps = 103/414 (24%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD---AHALFNGMKE 120
           IS L +C  +++I Q+H+Q +  G  +N +   K++ I+   K   D   A  +F+ + +
Sbjct: 39  ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVI-IFCCTKESGDVYYARKVFDEIPQ 97

Query: 121 RDSVSWSVMVGGFSKVADFINCFET----FREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
                W+ M+ G+S+    INC E+    ++  +   ++ D +T PF+++       +  
Sbjct: 98  PSVFIWNTMIKGYSR----INCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKY 153

Query: 177 GR-LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GAN 234
           G+ L++  V+   LD + FV    + +++ C +++ AR++FD     ++VTW V++ G N
Sbjct: 154 GKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYN 213

Query: 235 KF------------------------------------LLDVILG--------------- 243
           +F                                    L D++ G               
Sbjct: 214 RFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEP 273

Query: 244 -----TAVIDMYAKCGSIDSAREIFDRMRQKNVI-------------------------- 272
                 A+IDM+A CG +D+AR +FD M+ ++VI                          
Sbjct: 274 NLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMP 333

Query: 273 -----SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
                SW+AMI  Y    + K+ L LF  M  S V P+  T VS+L AC+H G +E G  
Sbjct: 334 ERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELG-E 392

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
              +  D   ++ D      ++D+  + G +++A K+   M  +KD+  W A++
Sbjct: 393 WAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-KKDKFTWTAMI 445


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 299/539 (55%), Gaps = 56/539 (10%)

Query: 95  ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGM 154
            N L+ +Y    +L +A  +F  M+ RD +SW+ ++    + +               G+
Sbjct: 341 GNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGV 400

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + D  +    +  C   + +  GR+IH  +++SG+  D  +  A++DMY  CK  DDA +
Sbjct: 401 KADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASR 460

Query: 215 LFDQMPTRDLVTWTVMIGA--------------------NKFLLDVI------------- 241
           +F  M  RD V+W  MI A                    + F+ DVI             
Sbjct: 461 VFRAMKARDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQA 520

Query: 242 ----------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                 +  AV++MYAK GS+  AR++F +M   +VISW+ MI+
Sbjct: 521 SLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMIS 580

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AV 338
           A+  HG   + L  F  M     LPN +TFVS++ ACSH GLV++G++LF S+  DF  +
Sbjct: 581 AFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTI 640

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P  +HY CMVDL+ RAG+LD A K I +  ++ D  +   +LGA ++HK+V+ A  +A+
Sbjct: 641 SPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAE 700

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L+E  P     YV+LSN+Y   G+  + AKIR LM  + ++K P ++ I V+ ++H+F 
Sbjct: 701 HLMELTPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFF 760

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD+T+ ++ EI   L  LS ++  AGY PDT   LHDV +E K   L  HSEKLAIAFG
Sbjct: 761 TGDTTNARTPEILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFG 820

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI+T  GT +RI+KNLRVCGDCH+  K +S IT R I+VRD++RFHHF+ G CSC DYW
Sbjct: 821 LISTAPGTSLRIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 165/362 (45%), Gaps = 57/362 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  +      ++  V+  LL++Y    ++ DA  +F+G++ +  V W+ M+  +++ 
Sbjct: 120 RRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQ 179

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI------------HDIV 184
                  + F   +  G++ +  T   V+ AC   KD+ + +L+            HD  
Sbjct: 180 DHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSS 239

Query: 185 LKSGL--------DIDQ------------FVCAALVDMYAKCKVIDDARQLFDQMPTR-- 222
             + L        D++Q             +  A++  Y + +  D+A +LF  M     
Sbjct: 240 FATALVNFYGSCGDLEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGV 299

Query: 223 --DLVTWTVMIGAN-------------------KFLLDVILGTAVIDMYAKCGSIDSARE 261
             D +    ++ A                    +F   V  G A+I+MY KCGS++ A E
Sbjct: 300 KLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVE 359

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  M+ ++VISW+ +IAA+G H Q  +AL L  +M    V  ++I+FV+ L  C+ +  
Sbjct: 360 VFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEA 419

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           + +G R+  S   +  ++ DV     ++D+ G     D+A ++  +M   +D+  W A++
Sbjct: 420 LAKG-RMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKA-RDQVSWNAMI 477

Query: 382 GA 383
            A
Sbjct: 478 TA 479



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 158/403 (39%), Gaps = 115/403 (28%)

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
           D + + +G+ +H  + KS +D   F+   LV MY  C  + DA+  FD+MP +D +TW  
Sbjct: 10  DSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWAR 69

Query: 230 MIGANKFLLD---------------------------------------------VILGT 244
           +I A+  + D                                             V+ GT
Sbjct: 70  LIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGT 129

Query: 245 A----------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           A          ++ MY KC S++ AR++FD +R K V+ W+AMI AY      ++A+ +F
Sbjct: 130 AMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVF 189

Query: 295 PMMLSSRVLPNRITFVSLLYACSH----------------------------TGLV---- 322
             ML   V   RITF+ +L ACS                             T LV    
Sbjct: 190 YAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYG 249

Query: 323 -----EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK---DE 374
                E+  R FS        R ++   T M+    +  R DEAL+L + M +E    D 
Sbjct: 250 SCGDLEQAFRAFSRH------RLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDR 303

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLE---RQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
               A+L AC   + ++   M    + E    +  N G+ ++  N+Y   G  ++  ++ 
Sbjct: 304 IACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALI--NMYGKCGSLEEAVEVF 361

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
             M  R    +  W  I   +  H      S HP++  +  ++
Sbjct: 362 RSMQHR---DVISWNTIIAAHGQH------SQHPEALHLLHLM 395



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 154/365 (42%), Gaps = 62/365 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VHA+I          + + L+ +Y    +L DA A F+ M  +D+++W+ ++    ++
Sbjct: 18  KEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQI 77

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACR-DRKDIVMGRLIHDIVLKSGLDIDQFV 195
            D       FR     G+   +     V+ AC  D + +  GR IH ++  + ++ D +V
Sbjct: 78  GDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYV 137

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKFLLDVILGT 244
              L+ MY KC  ++DAR++FD +  + +V W  MI A             F   ++ G 
Sbjct: 138 STTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGV 197

Query: 245 --------AVIDMYAKCGSIDSAREI--------FDRMRQKNVISWSAMIAAYGYHGQGK 288
                    V+D  +K   ++ A+ +         D +   +    +A++  YG  G  +
Sbjct: 198 KAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFA--TALVNFYGSCGDLE 255

Query: 289 KAL------------------------------DLFPMMLSSRVLPNRITFVSLLYACSH 318
           +A                               +LF +ML   V  +RI  +++L ACS 
Sbjct: 256 QAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSG 315

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
              +EEG R+      +      V     ++++ G+ G L+EA+++  SM   +D   W 
Sbjct: 316 PRGLEEG-RMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQ-HRDVISWN 373

Query: 379 ALLGA 383
            ++ A
Sbjct: 374 TIIAA 378



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 9/168 (5%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H +I   G  +N+ VAN +L +YA   +L  A  +F  M   D +SW+ M+  F++   
Sbjct: 528 LHDRIRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPDVISWNGMISAFAQHGH 587

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-----RLIHDIVLKSGLDIDQ 193
                  FR     G   +  T   V+ AC     +  G      L+HD    S    + 
Sbjct: 588 ADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTISP-RAEH 646

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDV 240
           + C  +VD+ A+   +D A +     P + D V  + M+GA+K   DV
Sbjct: 647 YYC--MVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDV 692


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 219/599 (36%), Positives = 316/599 (52%), Gaps = 65/599 (10%)

Query: 37  QNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNL- 92
           Q  +N    MQ     +F    +    +  L +C  + ++   R VH  ++       L 
Sbjct: 284 QEALNVFAKMQ-----EFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD 338

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
            +   L+ +YA    L D H +F  +KE+  +SW+ ++  F++          F +    
Sbjct: 339 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G+  DSY+L   + AC       +G  IH  ++K+G + + FV  AL+DMYAKC  +  A
Sbjct: 399 GLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSA 457

Query: 213 RQ-------------------------------LFDQMPTR----DLVTWTVMIGA---- 233
            +                               LFDQM       D +T+  +I A    
Sbjct: 458 NKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHL 517

Query: 234 ----------NKFLL-----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                     +K ++     D  L TA+ DMY+KCG +  A  +FDRM +++++SWS MI
Sbjct: 518 GYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMI 577

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
           A YG HGQ    + LF  ML S + PN ITF+ +L ACSH G VEEG   F+SM  +F V
Sbjct: 578 AGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSM-SEFGV 636

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P   H+ CMVDLL RAG L+ A ++I S+    +  +WGALL  CRIHK +D+ +   K
Sbjct: 637 EPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEK 696

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
           +LL+    + G+Y LLSN+YA  G W    K+R +M  + L+K+PG++ IE++ KI++F 
Sbjct: 697 NLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFG 756

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD++H Q+++IYR L      +    Y  + +  +    +  K  N+ SHSEKLAIAFG
Sbjct: 757 PGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFG 816

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +I T  GT +RI KNLRVC DCHSF K  S IT R II+RD NRFH F  G+CSC DYW
Sbjct: 817 IINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 157/368 (42%), Gaps = 58/368 (15%)

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
           C     + Q+HA +   G   +   + KL+  YA       +  +F+   + DS  W V+
Sbjct: 11  CATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVL 70

Query: 130 VGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +  +     F      + E + +   Q+ ++  P V++AC    D+ +G  +H  V+K G
Sbjct: 71  IKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCG 130

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKF- 236
            + D  V  +L+ MY +   +DDA + FD MP RD+V W+ ++           G + F 
Sbjct: 131 FESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFS 190

Query: 237 -------------LLDVI----------LGTAV-------------------IDMYAKCG 254
                        +L V           LG +V                   I MY K G
Sbjct: 191 QMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLG 250

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            + SA  +F+ +  +    W+ MI+ Y   G  ++AL++F  M   ++ PN++T V +L 
Sbjct: 251 DLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLC 310

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TCMVDLLGRAGRLDEALKLIESMSVEKD 373
           AC+  G V+EG R         A+ P++      +++L    G L +  K+ E++  EK 
Sbjct: 311 ACARLGRVKEG-RSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK-EKT 368

Query: 374 EGLWGALL 381
              W  L+
Sbjct: 369 ILSWNTLI 376



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 157/372 (42%), Gaps = 70/372 (18%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           +VH +++  G  ++ +V   LL +Y     L DA   F+ M  RD V+WS +V  F +  
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNG 180

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
                 + F + I   ++ DS T+  V  AC +   + +GR +H  V++  ++ +  +  
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN 240

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDV----------- 240
           +L+ MY K   +  A +LF+ +P R    WT MI      G  +  L+V           
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEP 300

Query: 241 --ILGTAVIDMYAKCGSIDSAR------------------------------------EI 262
             +    V+   A+ G +   R                                    ++
Sbjct: 301 NQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKV 360

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC-----S 317
           F+ +++K ++SW+ +I+ +  +GQ ++AL LF  M +  ++P+  +  S L AC     S
Sbjct: 361 FETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFS 420

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
             G    G  + +  ++DF           ++D+  + G +  A K+ E +  EK    W
Sbjct: 421 QLGAQIHGYIIKTGNFNDFV-------QNALIDMYAKCGFVHSANKMFEKIK-EKSLVTW 472

Query: 378 GALLGACRIHKN 389
            +++  C   +N
Sbjct: 473 NSMI--CGFSQN 482


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 196/562 (34%), Positives = 300/562 (53%), Gaps = 62/562 (11%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+H   +  G    + V N L+ +Y+    + +A  +F  + +R  +SW+ M+ GF    
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 187

Query: 138 DFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI--DQ 193
                 +TF       ++   D +TL  +++AC     I  G+ IH  +++SG       
Sbjct: 188 YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 247

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------- 233
            +  +LVD+Y KC  +  AR+ FDQ+  + +++W+ +I                      
Sbjct: 248 TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQEL 307

Query: 234 ----NKFLLDVILG------------------------------TAVIDMYAKCGSIDSA 259
               + F L  I+G                               +V+DMY KCG +D A
Sbjct: 308 NSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEA 367

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
            + F  M+ K+VISW+ +I  YG HG GKK++ +F  ML   + P+ + ++++L ACSH+
Sbjct: 368 EKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHS 427

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           G+++EG  LFS + +   ++P V+HY C+VDLLGRAGRL EA  LI++M ++ + G+W  
Sbjct: 428 GMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQT 487

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LL  CR+H +++L +   K LL    +NP +YV++SN+Y  AG W +    R+L   + L
Sbjct: 488 LLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGL 547

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVD 498
           KK  G +W+E+E ++H F  G+ +HP +  I   L     +L E  GY+     ELHD+D
Sbjct: 548 KKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDID 607

Query: 499 EEVKVGNLYSHSEKLAIAFGLIA---TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           +E K  NL +HSEKLAI   L       +G  IR+ KNLRVC DCH FIK +S IT+   
Sbjct: 608 DESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAY 667

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           +VRDA RFH FE G CSC DYW
Sbjct: 668 VVRDAVRFHSFEDGCCSCGDYW 689



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 132/310 (42%), Gaps = 51/310 (16%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q  QVH  ++  G+  NLI +N L+ +Y   +    A+ +F+ M ER+ VSWS ++ G  
Sbjct: 24  QGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHV 83

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
              D       F E  R G+  + +T    ++AC     +  G  IH   LK G ++   
Sbjct: 84  LNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVE 143

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V  +LVDMY+KC  I++A ++F ++  R L++W  M                        
Sbjct: 144 VGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAM------------------------ 179

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSL 312
                                  IA + + G G KALD F MM  + +   P+  T  SL
Sbjct: 180 -----------------------IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSL 216

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT-CMVDLLGRAGRLDEALKLIESMSVE 371
           L ACS TG++  G ++   +       P     T  +VDL  + G L  A K  + +  E
Sbjct: 217 LKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-E 275

Query: 372 KDEGLWGALL 381
           K    W +L+
Sbjct: 276 KTMISWSSLI 285


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 301/541 (55%), Gaps = 54/541 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+++ N L+        + D+  LF  M+ERDS+SW+ M+ GF++     +  + FRE  
Sbjct: 208 NVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMK 267

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----- 205
              +Q+D YT   V+ AC     +  G+ +H  ++++    + FV +ALVDMY K     
Sbjct: 268 LENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIK 327

Query: 206 ----------CKVI----------------DDARQLFDQMPTRDLVTWTVMIG------A 233
                     CK +                ++A + F  M    +      +G      A
Sbjct: 328 SAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCA 387

Query: 234 NKFLLD-----------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
           N   L+                 + +  A++ +Y KCGSI+ +  +F+ +  K+ ++W+A
Sbjct: 388 NLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTA 447

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +++ Y   G+  + + LF  ML+  + P+++TF+ +L ACS  GLVE+G ++F SM ++ 
Sbjct: 448 LVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEH 507

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            + P   HYTCM+DL  RAGR++EA   I  M    D   W  LL +CR + N+D+ + A
Sbjct: 508 GIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWA 567

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           A+ L+E  P N   YVLLS+VYA  G+W++VA++R  M  + L+K PG +WI+ +N++H 
Sbjct: 568 AEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQVHV 627

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           FS  D ++P S++IY  L  L+ K+   GY+PD N  LHDV +  K+  L  HSEKLAIA
Sbjct: 628 FSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLAIA 687

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGL+  P G  IR++KNLRVC DCH+  K++S IT R I+VRD  RFH F+ G CSC D+
Sbjct: 688 FGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCGDF 747

Query: 577 W 577
           W
Sbjct: 748 W 748



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 144/297 (48%), Gaps = 28/297 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N +L  Y+    +++   LF+ M  RD VSW+ ++ G++         + +   +
Sbjct: 74  NLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLML 133

Query: 151 R--CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
           +      L+  T   ++     R  + +GR IH  V+K G     FV + LVDMY+K  +
Sbjct: 134 KNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGM 193

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           I  AR++FD++P +++V +  +I                    +CG ++ ++ +F  MR+
Sbjct: 194 ISCARKVFDELPEKNVVMYNTLIMG----------------LMRCGRVEDSKRLFFEMRE 237

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           ++ ISW++MI  +  +G  + A+D+F  M    +  ++ TF S+L AC     ++EG ++
Sbjct: 238 RDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQV 297

Query: 329 FSSMWDDFAVRPDVKH----YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            +     + +R D K      + +VD+  +   +  A  + + M+  K+   W A+L
Sbjct: 298 HA-----YIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTC-KNVVSWTAML 348



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 32/226 (14%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +++ C +  +    + +H  ++K+    + F+   L+  YAK   I  A ++FDQMP  +
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
           L +W  ++ A                Y+K G +     +FD M +++ +SW+++I+ Y  
Sbjct: 75  LYSWNTILSA----------------YSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAG 118

Query: 284 HGQGKKALDLFPMMLSS--RVLPNRITFVSLLYACSHTGLVEEGLRL------FSSMWDD 335
            G   +++  + +ML +      NRITF +LL   S  G V+ G ++      F  M   
Sbjct: 119 CGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYV 178

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           F   P       +VD+  + G +  A K+ + +  EK+  ++  L+
Sbjct: 179 FVGSP-------LVDMYSKMGMISCARKVFDELP-EKNVVMYNTLI 216


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 193/562 (34%), Positives = 316/562 (56%), Gaps = 55/562 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R++   + ++  ++  G +    V N L+ +YA    +  A  +FN M+ +D+VSW+ ++
Sbjct: 321 RDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSII 380

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
            G+ +  D +   + F+  +    Q D  T   +I       D+  G+ +H   +KSG+ 
Sbjct: 381 SGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGIC 440

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFD---------------------------QMPTR- 222
           ID  V  AL+DMYAKC  + D+ ++F                            Q+ T+ 
Sbjct: 441 IDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQM 500

Query: 223 -------DLVTWTVMIGANKFLL-------------------DVILGTAVIDMYAKCGSI 256
                  D+ T+ V +     L                    ++ +G A+I+MY+KCG +
Sbjct: 501 RKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCL 560

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           +++  +F+RM +++V++W+ MI AYG +G+G+KAL+ F  M  S ++P+ + F++++YAC
Sbjct: 561 ENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYAC 620

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH+GLV+EGL  F  M   + + P ++HY C+VDLL R+ ++ +A + I++M ++ D  +
Sbjct: 621 SHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASI 680

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W ++L ACR   +++ AE  ++ ++E  P +PG+ +L SN YA   +W  V+ IR  +  
Sbjct: 681 WASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKD 740

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           + + K PG++WIEV   +H FS GD + PQSE IY+ L  L   +   GYIPD      +
Sbjct: 741 KHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQN 800

Query: 497 VDEEVKVGNLY-SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           ++EE +   L   HSE+LAIAFGL+ T  GT +++MKNLRVCGDCH   K +S I  R I
Sbjct: 801 LEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREI 860

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           +VRDANRFH F+ G CSC+D W
Sbjct: 861 LVRDANRFHLFKDGTCSCKDRW 882



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 205/446 (45%), Gaps = 49/446 (10%)

Query: 55  TRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           TR   P F   +L S  N+ ++R++HA +++ G  ++   + KL+  Y+  +    + ++
Sbjct: 3   TRVSSP-FISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSV 61

Query: 115 FNGMKERDSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           F  +    +V  W+ ++  FSK   F    E + +     +  D YT P VI+AC    D
Sbjct: 62  FRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFD 121

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
             MG L+++ +L  G + D FV  ALVDMY++  ++  ARQ+FD+MP RDLV+W  +I  
Sbjct: 122 AEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISG 181

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVI----SWSAMIAAYGYHGQGKK 289
                           Y+  G  + A EI+  ++   ++    + S+++ A+G     K+
Sbjct: 182 ----------------YSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQ 225

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
              L    L S V    +    L+          +  R+F    D+  VR  V + T + 
Sbjct: 226 GQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVF----DEMDVRDSVSYNTMIC 281

Query: 350 DLLGRAGRLDEALKL-IESMSVEKDEGLW-GALLGACRIHKNVDLAE------MAAKSLL 401
             L +   ++E++++ +E++   K + L   ++L AC   +++ LA+      + A  +L
Sbjct: 282 GYL-KLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVL 340

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E   +N     +L +VYA  G   D+   RD+      K    W      N I    +  
Sbjct: 341 ESTVRN-----ILIDVYAKCG---DMITARDVFNSMECKDTVSW------NSIISGYIQS 386

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYI 487
               ++ ++++M++ + E+ +   Y+
Sbjct: 387 GDLMEAMKLFKMMMIMEEQADHITYL 412


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 186/490 (37%), Positives = 280/490 (57%), Gaps = 46/490 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++    +L  YA    L DA  LF+ +  +D V W+ M+ G+++          FR+ +
Sbjct: 187 HVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQML 246

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G++ D  ++   + A         GR +H  V   G                + +V  
Sbjct: 247 RSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGR---------------RARVRL 291

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR--- 267
           +AR                            +GTA++DMY KCGS++ A  +F  +    
Sbjct: 292 NAR----------------------------VGTALVDMYYKCGSLEEAVAVFRDLGGGG 323

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
            ++V++W+AMI  Y  HG+ ++AL+ F  + +  + P  ITF+ +L ACSH+GLV+EG  
Sbjct: 324 DRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRA 383

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           LF++M +++ + P V+HY CMVDLLGRAGR++EA  L++SM  + D  +W +LLGACR+H
Sbjct: 384 LFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLH 443

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
           KN+ L +  A  L+     N G YVLLSN+YA AG+W++V ++R +M    ++K PG + 
Sbjct: 444 KNLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSA 503

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           +EV  ++ +F  GD +HP+S EIY  L  ++      G++P T   LHD+D+  K   L 
Sbjct: 504 VEVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALA 563

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSEKLA+AFGLI+TP  T I+I+KNLR C DCH+ +K VS  T R I+ RD NRFHHF 
Sbjct: 564 VHSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFV 623

Query: 568 GGACSCRDYW 577
            G+CSC DYW
Sbjct: 624 DGSCSCGDYW 633


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 199/556 (35%), Positives = 303/556 (54%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R  HAQI+  G   +++ +N L+ +Y+    +  A   FN M  +  VSW+ ++G  ++ 
Sbjct: 63  RACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQN 122

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
           A+     +   +  R G   + +T+  V+  C  +  I+    +H   +K+ +D + FV 
Sbjct: 123 AEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVG 182

Query: 197 AALVDMYAKCKVIDDARQL---------------------------------------FD 217
            AL+ +YAKC  I DA Q+                                       FD
Sbjct: 183 TALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFD 242

Query: 218 QMPTRDLVTWTVMIG---------------ANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
           Q P       +   G                + F  ++ + +++IDMYAKCG I  A  +
Sbjct: 243 QDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLV 302

Query: 263 FDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           F  + + ++++ W+AMI+ +  H +  +A+ LF  M      P+ +T+V +L ACSH GL
Sbjct: 303 FQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGL 362

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            EEG + F  M     + P V HY+CM+D+LGRAG + +A  LIE M       +WG+LL
Sbjct: 363 HEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLL 422

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            +C+I+ N++ AE+AAK L E +P N G+++LL+N+YA   +W +VA+ R L+    ++K
Sbjct: 423 ASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRK 482

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G +WIE++NKIH F+VG+  HPQ ++IY  L  L  +L+   Y  DT+ +LHDV+E  
Sbjct: 483 ERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENR 542

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEKLAI FGL+  P    IRI+KNLR+CGDCH+F+K VS  T R IIVRD N
Sbjct: 543 KQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTN 602

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC ++W
Sbjct: 603 RFHHFKDGFCSCGEFW 618


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 206/523 (39%), Positives = 288/523 (55%), Gaps = 63/523 (12%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  +V  G   +  + + L+++YA  K L  A  LFN    RD VSW+ M+ G+ K  +
Sbjct: 188 VHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVE 247

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
             +    F   +                 CRD                            
Sbjct: 248 MGHARMVFDRMV-----------------CRD----------------------VISWNT 268

Query: 199 LVDMYAKCKVIDDARQLFDQM------PTR----DLVTWTVMIGA-------------NK 235
           +++ YA C   ++A  LFDQM      PT      L++    +GA             N+
Sbjct: 269 MINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNR 328

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
             ++ I+GTA++DMYAKCG I  A ++F+ M  K+V++W+ +IA    HG  K+A  LF 
Sbjct: 329 IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFK 388

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M  + V PN ITFV++L ACSH G+V+EG +L   M   + + P V+HY C++DLL RA
Sbjct: 389 EMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARA 448

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
           G L+EA++LI +M +E +    GALLG CRIH N +L EM  K L+  QP + G Y+LLS
Sbjct: 449 GFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLS 508

Query: 416 NVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLV 475
           N+YA A +W D  K+R+LM    + K+PG + IE++  +H+F  GD +HP+S +IY  L 
Sbjct: 509 NIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLN 568

Query: 476 TLSEKLELA-GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
            +  +L+ A GY  DT   L D++EE K   L  HSEKLAIA+GL+       IRI+KNL
Sbjct: 569 EIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNL 628

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           RVC DCH  IK +S +  R IIVRD NRFHHFE G CSC D+W
Sbjct: 629 RVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 671



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 188/394 (47%), Gaps = 25/394 (6%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAG-GTLTNLIVANKLLYIYAL 104
           M   P+       +P+  +S    C+ +  ++QVHAQI+    +   L     L  +   
Sbjct: 54  MSRTPNPLTNPPSNPQI-LSLFNPCKTLRHLKQVHAQIITHHNSPFQLSALASLSALSPF 112

Query: 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFV 164
              L  A  +F+ ++      ++ ++   S     +     +   ++ G++ D  T PFV
Sbjct: 113 PTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFV 172

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           I+AC +      G L+H  V+KSG + D ++ ++L+ +YA  K +  A+QLF+    RD+
Sbjct: 173 IKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDV 232

Query: 225 VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
           V+W  M                ID Y K   +  AR +FDRM  ++VISW+ MI  Y   
Sbjct: 233 VSWNAM----------------IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIC 276

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G+  +AL LF  M +  V P   T VSLL AC+H G +++GL L + + D+   R +V  
Sbjct: 277 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDN---RIEVNS 333

Query: 345 Y--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
              T +VD+  + G++  A ++  +M   KD   W  ++    IH NV  A+   K + E
Sbjct: 334 IVGTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKE 392

Query: 403 RQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
              + N   +V + +  ++AG   +  K+ D M+
Sbjct: 393 AGVEPNDITFVAILSACSHAGMVDEGQKLLDCMS 426



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/216 (19%), Positives = 95/216 (43%), Gaps = 24/216 (11%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            +H  I       N IV   L+ +YA    ++ A  +FN M+ +D ++W+ ++ G +   
Sbjct: 319 HLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHG 378

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLD--IDQF 194
           +     + F+E    G++ +  T   ++ AC     +  G+ + D +  S G++  ++ +
Sbjct: 379 NVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY 438

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA----NKFLLDVILGTAVIDM 249
            C  ++D+ A+   +++A +L   MP   +      ++G       F L  ++G  +I++
Sbjct: 439 GC--VIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL 496

Query: 250 --------------YAKCGSIDSAREIFDRMRQKNV 271
                         YA     D AR++ + M+   +
Sbjct: 497 QPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 532


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 289/515 (56%), Gaps = 38/515 (7%)

Query: 46  MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           +   PD  F       F I +      +F  +  H  ++     +++ + N L++ YA  
Sbjct: 127 LHQSPD--FPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC 184

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             L   + +F     RD VSW+ M+  F +        E F+E     ++ +  T+  V+
Sbjct: 185 GELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
            AC  + D   GR +H  + ++ +     +  A++DMY KC  ++DA++LFD+MP +D+V
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIV 304

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           +WT M+                  YAK G  D+A+ +                     HG
Sbjct: 305 SWTTMLVG----------------YAKIGEYDAAQGL-------------------AMHG 329

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
            GK A+ LF  M   +V PN +TF ++L ACSH GLVEEG   F+ M   + V P VKHY
Sbjct: 330 HGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHY 389

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            CMVD+LGRAG L+EA++LIE M +     +WGALLGAC IH+NV LAE A   L+E +P
Sbjct: 390 ACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEP 449

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N G YVLLSN+YA AG+W  V+ +R LM    LKK PG + IEV+  +H+F VGD++HP
Sbjct: 450 GNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHP 509

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE-VKVGNLYSHSEKLAIAFGLIATPE 524
            +++IY  L  +  +LE  GY+P+ +  L  V+EE VK   L+ HSEKLAIAFGLI+T +
Sbjct: 510 SAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQ 569

Query: 525 GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
              IRI+KNLRVCGDCHS  K VS +  R I++RD
Sbjct: 570 SQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRD 604



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 140/324 (43%), Gaps = 58/324 (17%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKER 121
           +S +  C    Q++Q+HAQ++  G   +   A++L+   AL    +L  A  +F+ +   
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ----LDSYTLPFVIRACRDRKDIVMG 177
           +  +W+ ++  ++  +   N  ++   F+R   Q     D +T PF+I+A  + +++  G
Sbjct: 99  NLYTWNTLIRAYASSS---NPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTG 155

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
           +  H +V+K  L  D F+  +L+  YAKC  +    ++F   P RD+V+W  MI A    
Sbjct: 156 KAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITA---- 211

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
                       + + G  + A E+F  M  +N                           
Sbjct: 212 ------------FVQGGCPEEALELFQEMETQN--------------------------- 232

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
               V PN IT V +L AC+     E G R   S  +   +   +     M+D+  + G 
Sbjct: 233 ----VKPNGITMVGVLSACAKKSDFEFG-RWVHSYIERNRIXESLTLSNAMLDMYTKCGS 287

Query: 358 LDEALKLIESMSVEKDEGLWGALL 381
           +++A +L + M  EKD   W  +L
Sbjct: 288 VEDAKRLFDKMP-EKDIVSWTTML 310


>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
 gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
          Length = 688

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 309/560 (55%), Gaps = 65/560 (11%)

Query: 82  QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
            + + G   +L   N +L  Y     L +A   F+GM +R+ V+W +M+GG         
Sbjct: 130 HVESSGFDLDLYTHNHVLRTYLECGMLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRA 189

Query: 142 CFETFREFIRC------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DI-D 192
               FRE +        G      +L   +RA         G+ +H  V+K+G   D+ D
Sbjct: 190 ALALFREMLLAEEAGGDGDAPPPRSLVVALRAATASGSARAGQQLHCCVVKAGACGDVAD 249

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW------------------------- 227
           +++  AL+DMY+KC +ID+AR++FD +P   +V W                         
Sbjct: 250 RYLACALLDMYSKCGLIDEARRVFDGLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCR 309

Query: 228 ----------TVMIGANKFL-------------------LDVILGTAVIDMYAKCGSIDS 258
                     + M+G    L                   LD++  TA++D+Y K G ++ 
Sbjct: 310 SRVAMDQFTFSTMLGVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMED 369

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
           AR +F+RM ++N+ISW+A+IA YGYHG G KA+++F  +++  V+PN +TF+++L AC  
Sbjct: 370 ARNVFERMPRRNLISWNALIAGYGYHGMGDKAIEMFERLIAEGVVPNHVTFLAVLNACRF 429

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
           +GLV++G R+F  M ++  ++P   HY C+++L GR G LDEA  +I          +WG
Sbjct: 430 SGLVDKGKRIFQLMTENLRMKPRAMHYACVIELFGREGLLDEAYSMIRRAPFTPTANMWG 489

Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
           ALL A RIHKN+ LA++AA+ LL  +P+    Y +L N+Y ++GR  D  K+ + + R+ 
Sbjct: 490 ALLTASRIHKNMHLAKLAAEQLLAMEPEKINSYAVLLNLYVSSGRQDDACKVVETLKRKG 549

Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV- 497
           L      TWI V+   H+F   D+ HPQS EIYR L TL + +  AGY+ + N  L D+ 
Sbjct: 550 LYIHNACTWITVKKTDHKFFFKDTLHPQSAEIYRRLHTLMKDVREAGYVAEENELLPDIY 609

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
            +E KV + Y HSE+LAIAFGL++T   T +RI ++ R+C DCH  IK V+ +T+R I+V
Sbjct: 610 PDEQKVSSAY-HSERLAIAFGLMSTAPQTPLRINQSHRLCRDCHKVIKFVAEVTKREIVV 668

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD +RFHHF+ G CSC DYW
Sbjct: 669 RDGSRFHHFKLGICSCGDYW 688


>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
          Length = 978

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 205/555 (36%), Positives = 305/555 (54%), Gaps = 73/555 (13%)

Query: 91  NLIVANKLLYIYALH--KALTDAHALFNGMKERDSVSWSVMVGGFSKVAD--FINCFETF 146
           N  ++ KLL   A+    +L  A  +F+ +    + +W+ M+ GFS+      +     +
Sbjct: 429 NPSISEKLLNFCAVSVSGSLAYAQLVFHRIHNPQTPAWNSMIRGFSQSPSPLQLQAIVFY 488

Query: 147 REFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
              +     + D+YT  F+++AC + K+    R +H  +++ G D D  +C  L+  YA 
Sbjct: 489 NHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAG 548

Query: 206 CKVIDDARQLF-------------------------------DQMPTRD----------L 224
             +I+ A ++F                               DQM   +          L
Sbjct: 549 NGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSL 608

Query: 225 VTWTVMIGA-------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
           ++    +GA              + + ++ +G A+IDMYAKCGS+ SA  IF+ M +++V
Sbjct: 609 LSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMPKRDV 668

Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            +W++MI  YG HG+G +A+  F  ML + V PN ITF+ LL  CSH GLV+EG++ F  
Sbjct: 669 FTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQYFHM 728

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
           M  +F ++P +KHY CMVDL GRAG+L EAL++I S   + D  LW  LLG+C+IH+NV+
Sbjct: 729 MSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCKIHRNVE 788

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           + EMA ++L++      G  VLLS +YA A   Q VA++R L+  R +K  PGW+WIEV 
Sbjct: 789 IGEMAMRNLVQLGSLGAGDCVLLSGIYAEAKDLQGVARMRKLIQSRGIKTTPGWSWIEVG 848

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY---------IPDTNFELHDVDEEVK 502
           +++H+F V D +HP S EIYR L  +  +  L GY          P++N + +  +    
Sbjct: 849 DQVHRFVVDDKSHPDSREIYRKLEEVIHRASLVGYAMEESSLVAAPESNTQEYCWETSTS 908

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
                 HSEKLAIA+GL  TPEGT + I+KNLRVC DCH+F K VS    R IIVRD  R
Sbjct: 909 Y-----HSEKLAIAYGLARTPEGTSLLIVKNLRVCRDCHNFTKFVSKAFDREIIVRDRVR 963

Query: 563 FHHFEGGACSCRDYW 577
           FHHF GG CSC+++W
Sbjct: 964 FHHFRGGHCSCKEFW 978



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 93/206 (45%), Gaps = 13/206 (6%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
            +S L SC ++  +    Q+H        + N+ V N L+ +YA   +L  A ++FN M 
Sbjct: 605 LVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNSMP 664

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-- 177
           +RD  +W+ M+ G+            F   +  G++ +S T   ++  C  +  +  G  
Sbjct: 665 KRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEGVQ 724

Query: 178 ---RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
               +  +  LK G  I  + C  +VD++ +   + +A ++    P++ D V W  ++G+
Sbjct: 725 YFHMMSSEFNLKPG--IKHYGC--MVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGS 780

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSA 259
            K   +V +G   +    + GS+ + 
Sbjct: 781 CKIHRNVEIGEMAMRNLVQLGSLGAG 806


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 191/519 (36%), Positives = 292/519 (56%), Gaps = 51/519 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA-LHKALTDAHALFNGMKERD 122
           +++    +++   RQ H  ++  G   N  V + L+ +Y+    ++ +   +F  +   D
Sbjct: 250 LTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPD 309

Query: 123 SVSWSVMVGGFSKVADFI-NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            V W+ M+ GFS   D   +    FRE  R G + D  +   V  AC +     +G+ +H
Sbjct: 310 LVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVH 369

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
            + +KS +  ++                                              V 
Sbjct: 370 ALAIKSDVPYNR----------------------------------------------VS 383

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           +  A++ MY+KCG++  AR +FD M + N +S ++MIA Y  HG   ++L LF +ML   
Sbjct: 384 VNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKD 443

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + PN ITF+++L AC HTG VEEG + F+ M + F + P+ +HY+CM+DLLGRAG+L EA
Sbjct: 444 IAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEA 503

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            ++IE+M        W  LLGACR H NV+LA  AA   L  +P N   YV+LSN+YA+A
Sbjct: 504 ERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASA 563

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            RW++ A ++ LM  R +KK PG +WIE++ K+H F   D++HP  +EI+  +  + +K+
Sbjct: 564 ARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKM 623

Query: 482 ELAGYIPDTNFEL---HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           + AGY+PD  + L    +V+ + +   L  HSEKLA+AFGLI+T EG  I ++KNLR+CG
Sbjct: 624 KQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFGLISTEEGVPILVVKNLRICG 683

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH+ +K +SA+T R I VRD +RFH F+ G CSCRDYW
Sbjct: 684 DCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 166/411 (40%), Gaps = 71/411 (17%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N L+  YA H  +  A  +F+ + + D VS++ ++  ++   +       F E  
Sbjct: 74  NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFEEVR 133

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              + LD +TL  VI AC D  D+ + R +H  V+  G D    V  A++  Y++   + 
Sbjct: 134 ELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLS 191

Query: 211 DARQLFDQMPT---RDLVTWTVMIGA------------------------NKFLLDVILG 243
           +AR++F +M     RD V+W  MI A                        + F +  +L 
Sbjct: 192 EARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMASVLT 251

Query: 244 --TAVIDM----------------------------YAKC-GSIDSAREIFDRMRQKNVI 272
             T V D+                            Y+KC GS+   R++F+ +   +++
Sbjct: 252 AFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLV 311

Query: 273 SWSAMIAAYG-YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
            W+ MI+ +  Y    +  L  F  M  +   P+  +FV +  ACS+      G ++ + 
Sbjct: 312 LWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHA- 370

Query: 332 MWDDFAVRPDVKH-----YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
                A++ DV +        +V +  + G + +A ++ ++M       L   + G  + 
Sbjct: 371 ----LAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQH 426

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
              V+   +    L +    N   ++ + +   + G+ ++  K  ++M  R
Sbjct: 427 GVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKER 477



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 27/244 (11%)

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           ++C   L   T   +++AC  ++D++ G+++H +  KS +    ++      +Y+KC  +
Sbjct: 1   MQCTYPLQLQTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSL 60

Query: 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK 269
            +A+  F      ++ ++  +I A                YAK   I  AR +FD + Q 
Sbjct: 61  HNAQTSFHLTQYPNVFSYNTLINA----------------YAKHSLIHIARRVFDEIPQP 104

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-HTGLVEEGLRL 328
           +++S++ +IAAY   G+    L LF  +   R+  +  T   ++ AC    GLV + L  
Sbjct: 105 DIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVRQ-LHC 163

Query: 329 FSSMW--DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV--EKDEGLWGALLGAC 384
           F  +   D +A   +      ++    R G L EA ++   M     +DE  W A++ AC
Sbjct: 164 FVVVCGHDCYASVNNA-----VLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVAC 218

Query: 385 RIHK 388
             H+
Sbjct: 219 GQHR 222


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/547 (36%), Positives = 298/547 (54%), Gaps = 63/547 (11%)

Query: 93  IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152
           ++   LL  YA    L  A A F+ ++  D VSW+ M   + +          F   +  
Sbjct: 390 VLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLE 449

Query: 153 GMQLDSYTLPFVIRACR---DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209
           G++    T    + AC     +    +G+ I  ++ ++GL+ D  V  A ++MYAKC  +
Sbjct: 450 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 509

Query: 210 DDAR---------------------------------QLFDQMPTRDLV-----TWTVMI 231
            DAR                                 +LF  M    LV     T+  ++
Sbjct: 510 ADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVL 569

Query: 232 GA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM--RQKN 270
            A                   N F  D ++  A+++MYAKCGS+D A+ IFD+    Q++
Sbjct: 570 DASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQED 629

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
           VI+W+++IA Y  +GQ ++AL LF  M    V PN +TF+S L AC+H G +E+G  L S
Sbjct: 630 VIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLS 689

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            M  D  + P  KH++C+VDLLGR GRLDEA KL+E  S + D   W ALL AC+  K +
Sbjct: 690 GMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDACKNSKEL 748

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           +  E  A+ +++  P+    Y++L+++YA AGRW + A IR  M  + ++  PG + +EV
Sbjct: 749 ERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEV 808

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
             ++H FS GD +HP+SEEIY  L  L   ++ AGY+ DT   LHDV +E K   L  HS
Sbjct: 809 NQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHS 868

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGL++TP G+ +R++KNLRVC DCH+  K +S +T R I++RD++R+HHF  G 
Sbjct: 869 EKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGT 928

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 929 CSCGDYW 935



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 194/452 (42%), Gaps = 82/452 (18%)

Query: 6   KHGFLVSISAKLRFFSS--STTAAI-ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF 62
           K G L    A    F+S  S TA I A   HG     M     M++ P+C          
Sbjct: 92  KCGNLAEAEALADRFASVYSCTAMIRAWMEHGRPDKAMELFDRMEVRPNCHA-------- 143

Query: 63  FISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM- 118
            I+ + +C    N+   R++H+QI       N ++ N L+ +Y+   +L DA   F+ + 
Sbjct: 144 LIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLP 203

Query: 119 --KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIV 175
              +RD V+W+ M+  F +        + FR+  R G    +S T   V+ +C +   + 
Sbjct: 204 RASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLS 263

Query: 176 MG--RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF----DQMPTRDLVTWTV 229
           +   R IH  ++ +G++ + FV  ALVD Y K   +DDA ++F    D+ P+  LVT + 
Sbjct: 264 LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSA 323

Query: 230 MIG--------------------------------------------ANKFLL------- 238
           MI                                             A  F+L       
Sbjct: 324 MISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVV 383

Query: 239 ----DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               D +LGT ++  YA+   +  AR  FD ++  +V+SW+AM AAY  H + ++AL LF
Sbjct: 384 SATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLF 443

Query: 295 PMMLSSRVLPNRITFVSLLYAC-SHTGLVEEGL-RLFSSMWDDFAVRPDVKHYTCMVDLL 352
             ML   V P+  TF++ L AC ++       + +   S+ ++  +  D       +++ 
Sbjct: 444 ERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMY 503

Query: 353 GRAGRLDEALKLIESMS-VEKDEGLWGALLGA 383
            + G L +A  + E +S   +D   W ++L A
Sbjct: 504 AKCGSLADARAVFERISPARRDCITWNSMLAA 535



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 31/226 (13%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN--GMKERDSVSWSVM 129
           +I Q R++HA++V+ G  ++ ++ N LL +YA   +L DA A+F+     + D ++W+ +
Sbjct: 577 SIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSL 636

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           + G+++        + F    + G++ +  T    + AC        G+L     L SG+
Sbjct: 637 IAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHG-----GKLEQGCELLSGM 691

Query: 190 DIDQFVCAA------LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK-------- 235
             D  +  A      +VD+  +C  +D+A +L ++    D++TW  ++ A K        
Sbjct: 692 TPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACKNSKELERG 751

Query: 236 -------FLLDVILGTAVI---DMYAKCGSIDSAREIFDRMRQKNV 271
                    LD  + ++ I    MYA  G  + A  I   M  K +
Sbjct: 752 ERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGI 797



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 10/145 (6%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           L + +I M+AKCG++  A  + DR    +V S +AMI A+  HG+  KA++LF  M    
Sbjct: 82  LASDLIVMHAKCGNLAEAEALADRF--ASVYSCTAMIRAWMEHGRPDKAMELFDRM---E 136

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDE 360
           V PN    ++L+ ACS  G +  G R+ S + D DF     + +   ++ +  + G L +
Sbjct: 137 VRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGN--ALISMYSKCGSLID 194

Query: 361 ALKLIESM--SVEKDEGLWGALLGA 383
           A +  + +  + ++D   W A++ A
Sbjct: 195 AKQAFDRLPRASKRDVVTWNAMISA 219


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  368 bits (944), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 202/539 (37%), Positives = 299/539 (55%), Gaps = 56/539 (10%)

Query: 95  ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGM 154
            N L+ +Y    +L +A  +F  M+ RD +SW+ ++    + +               G+
Sbjct: 341 GNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGV 400

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + D  +    +  C   + +  GR+IH  +++SG+  D  +  A++DMY  CK  DDA +
Sbjct: 401 KADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASR 460

Query: 215 LFDQMPTRDLVTWTVMIGA--------------------NKFLLDVI------------- 241
           +F  M  RD V+W  MI A                    + F+ DVI             
Sbjct: 461 VFRAMKVRDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQA 520

Query: 242 ----------------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                                 +  AV++MYAK G++  AR++F +M   +VISW+ MI+
Sbjct: 521 SLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPDVISWNGMIS 580

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AV 338
           A+  HG   + L  F  M     LPN +TFVS++ ACSH GLV++G++LF S+  DF  +
Sbjct: 581 AFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFVSLLHDFPTI 640

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P  +HY CMVDL+ RAG+LD A K I +  ++ D  +   +LGA ++HK+V+ A  +A+
Sbjct: 641 SPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKDVERARKSAE 700

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            L+E  P     YV+LSN+Y   G+  + AKIR LM  + ++K P ++ I V+ ++H+F 
Sbjct: 701 HLMELTPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIAVKRRVHEFF 760

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD+T+ ++ EI   L  LS ++  AGY PDT   LHDV +E K   L  HSEKLAIAFG
Sbjct: 761 TGDTTNARTPEILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYHSEKLAIAFG 820

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI+T  GT +RI+KNLRVCGDCH+  K +S IT R I+VRD++RFHHF+ G CSC DYW
Sbjct: 821 LISTAPGTSLRIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNGTCSCGDYW 879



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 166/362 (45%), Gaps = 57/362 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           R++H  +      ++  V+  LL++Y    ++ DA  +F+G++ +  V W+ M+  +++ 
Sbjct: 120 RRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQ 179

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI------------HDIV 184
                  + F   +  G++ +  T   V+ AC   KD+ + +L+            HD  
Sbjct: 180 DHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSS 239

Query: 185 LKSGL--------DIDQ------------FVCAALVDMYAKCKVIDDARQLFDQMPTR-- 222
             + L        D++Q             +  A++  Y + +  D+A +LF  M     
Sbjct: 240 FATALVNFYGSCGDLEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGV 299

Query: 223 --DLVTWTVMIGAN-------------------KFLLDVILGTAVIDMYAKCGSIDSARE 261
             D +    ++ A                    +F   V  G A+I+MY KCGS++ A E
Sbjct: 300 KLDRIACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVE 359

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  M+ ++VISW+ +IAA+G H Q  +AL L  +M    V  ++I+FV+ L  C+ +  
Sbjct: 360 VFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEA 419

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           + +G R+  S   +  ++ DV     ++D+ G     D+A ++  +M V +D+  W A++
Sbjct: 420 LAKG-RMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKV-RDQVSWNAMI 477

Query: 382 GA 383
            A
Sbjct: 478 TA 479



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 158/403 (39%), Gaps = 115/403 (28%)

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
           D + + +G+ +H  + KS +D   F+   LV MY  C  + DA+  FD+MP +D +TW  
Sbjct: 10  DSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWAR 69

Query: 230 MIGANKFLLD---------------------------------------------VILGT 244
           +I A+  + D                                             V+ GT
Sbjct: 70  LIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGT 129

Query: 245 A----------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
           A          ++ MY KC S++ AR++FD +R K V+ W+AMI AY      ++A+ +F
Sbjct: 130 AMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVF 189

Query: 295 PMMLSSRVLPNRITFVSLLYACSH----------------------------TGLV---- 322
             ML   V   RITF+ +L ACS                             T LV    
Sbjct: 190 YAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYG 249

Query: 323 -----EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDE 374
                E+  R FS        R ++   T M+    +  R DEAL+L + M    V+ D 
Sbjct: 250 SCGDLEQAFRAFSRH------RLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDR 303

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLE---RQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
               A+L AC   + ++   +    + E    +  N G+ ++  N+Y   G  ++  ++ 
Sbjct: 304 IACMAVLNACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALI--NMYGKCGSLEEAVEVF 361

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
             M  R    +  W  I   +  H      S HP++  +  ++
Sbjct: 362 RSMQHR---DVISWNTIIAAHGQH------SQHPEALHLLHLM 395



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 154/365 (42%), Gaps = 62/365 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VHA+I          + + L+ +Y    +L DA A F+ M  +D+++W+ ++    ++
Sbjct: 18  KEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLIRAHGQI 77

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACR-DRKDIVMGRLIHDIVLKSGLDIDQFV 195
            D       FR     G+   +     V+ AC  D + +  GR IH ++  + ++ D +V
Sbjct: 78  GDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYV 137

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----------NKFLLDVILGT 244
              L+ MY KC  ++DAR++FD +  + +V W  MI A             F   ++ G 
Sbjct: 138 STTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGV 197

Query: 245 --------AVIDMYAKCGSIDSAREI--------FDRMRQKNVISWSAMIAAYGYHGQGK 288
                    V+D  +K   ++ A+ +         D +   +    +A++  YG  G  +
Sbjct: 198 KAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFA--TALVNFYGSCGDLE 255

Query: 289 KAL------------------------------DLFPMMLSSRVLPNRITFVSLLYACSH 318
           +A                               +LF +ML   V  +RI  +++L ACS 
Sbjct: 256 QAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSG 315

Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
              +EEG R+      +      V     ++++ G+ G L+EA+++  SM   +D   W 
Sbjct: 316 PRGLEEG-RIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQ-HRDVISWN 373

Query: 379 ALLGA 383
            ++ A
Sbjct: 374 TIIAA 378


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 305/544 (56%), Gaps = 56/544 (10%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF 149
           T L VA+ L  +Y+    L++A  +F+ M ++D+V+W+ M+ G++K         +FR+ 
Sbjct: 304 TELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDM 363

Query: 150 IRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            R G+   D +    V+ A    KD  + + IH  V K+G +++  V  AL+DMYAK   
Sbjct: 364 KREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMD 423

Query: 209 IDDARQLFDQMPTR-DLVTWTVMIGA------------------------NKFLL----- 238
           ++ A ++    P   ++V+ T MI                          N+F       
Sbjct: 424 VESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIK 483

Query: 239 -------------------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
                                    D  +G+ ++DMY KCG I  + ++F+ +  +  I+
Sbjct: 484 GCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIA 543

Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           W+A+I  +  HG G++A+  F  M+ S + PN I FVSLL ACSH GLV+EGL+ F SM 
Sbjct: 544 WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMK 603

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +   + P  +HY+C++D  GRAGRLDEA K I  M ++ +   W +LLGACR+  + +L 
Sbjct: 604 EAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELG 663

Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
           E+AA++L++ +P N G +V LS +YA+ G+W+DV  +R LM   R+KK+PG++W++   K
Sbjct: 664 EVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKK 723

Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
            H F   D +HPQ ++IY  L  L+ +++  GYIPDT+F   ++++  K   L  HSE++
Sbjct: 724 THVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERI 783

Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           A+AF LI+ P    I + KNLR+C DCH+  K +  + RR IIVRD +RFHHF  G CSC
Sbjct: 784 AVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSC 843

Query: 574 RDYW 577
            DYW
Sbjct: 844 GDYW 847



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 161/377 (42%), Gaps = 63/377 (16%)

Query: 65  SSLLSCRNIFQIRQ---VHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           S L SC     +R+   +HA++V +G    +  +AN L+ +Y+    L  A  LF  M  
Sbjct: 175 SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 234

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R++VSW+ +V G S+     +    F    R G+    + L    RA       +  R  
Sbjct: 235 RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSC 294

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
                  G D + FV + L DMY+KC ++ +A ++FDQMP +D V WT MI         
Sbjct: 295 -TASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 353

Query: 232 ----------------GANK------------------------------FLLDVILGTA 245
                           GA++                              F L+V +  A
Sbjct: 354 EAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNA 413

Query: 246 VIDMYAKCGSIDSAREIFD-RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           +IDMYAK   ++SA  +        NV+S ++MI  Y      ++AL ++  +    V P
Sbjct: 414 LIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEP 473

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           N  TF S++  C+   L+E+G +L + +     +R      T +VD+ G+ G +  +++L
Sbjct: 474 NEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST-LVDMYGKCGLISLSMQL 532

Query: 365 IESMSVEKDEGLWGALL 381
              +    D   W A++
Sbjct: 533 FNEIEYRTDIA-WNAVI 548



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 128/327 (39%), Gaps = 87/327 (26%)

Query: 161 LPFVIRACRDRKDIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           L  ++++C    D+  GRL+H  +VL        F+   L+ MY+ C  +  A +LF  M
Sbjct: 173 LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 232

Query: 220 PTRDLVTW-TVMIGANKFLL---------------------------------------- 238
           P R+ V+W T++ G ++ L+                                        
Sbjct: 233 PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRAR 292

Query: 239 ------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
                       ++ + + + DMY+KCG +  A  +FD+M QK+ ++W+AMI  Y  +G 
Sbjct: 293 SCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 352

Query: 287 GKKA-LDLFPMMLSSRVLPNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWD 334
            + A L    M     V  ++  F S+L A             H  + + G  L      
Sbjct: 353 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFEL------ 406

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI--HKNVDL 392
           + AVR        ++D+  ++  ++ A +++     + D G W  + G   I  +   D 
Sbjct: 407 EVAVR------NALIDMYAKSMDVESASRVL-----KIDPGGWNVVSGTSMIDGYIETDC 455

Query: 393 AEMAAKSLLE--RQPQNPGHYVLLSNV 417
            E A    +E  RQ   P  +   S +
Sbjct: 456 VEEALVIYVELRRQGVEPNEFTFSSMI 482



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 132/357 (36%), Gaps = 52/357 (14%)

Query: 65  SSLLSCRNIFQIRQ---VHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           S L SC     +R+   +HA++V +G    +  +AN L+ +Y+    L  A  LF  M  
Sbjct: 25  SLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPR 84

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           R++VSW+ +V G S+     +    F    R G+                 K  +     
Sbjct: 85  RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHC 144

Query: 181 HD----IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
           H     +V   G  + +    A         ++    +  D    R L    V+ GA   
Sbjct: 145 HSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAA- 203

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
                L   +I MY+ C  + SA  +F  M ++N +SW+ +++    +     AL  F  
Sbjct: 204 -ASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAA 262

Query: 297 MLSSRVLPNR---------------------------ITFVSLLYACSH-------TGLV 322
           M  + V P R                           + F + L+  S+        GL+
Sbjct: 263 MRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLADMYSKCGLL 322

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            E  R+F  M      + D   +T M+D   + G L+ A+     M   K EGL GA
Sbjct: 323 SEACRVFDQM-----PQKDAVAWTAMIDGYAKNGSLEAAVLSFRDM---KREGLVGA 371



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 8/213 (3%)

Query: 161 LPFVIRACRDRKDIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           L  ++++C    D+  GRL+H  +VL        F+   L+ MY+ C  +  A +LF  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 220 PTRDLVTWTVMI-GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           P R+ V+WT ++ G ++ L+      A   M  +   +   R I++  +  N +     +
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAM--RRAGVAPTRLIYE-TKFHNTLGPKHTL 139

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFV---SLLYACSHTGLVEEGLRLFSSMWDD 335
           AA   H      +  +   L     P   T V   SLL +C   G +  G  L + +   
Sbjct: 140 AASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLS 199

Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            A          ++ +      L  AL+L  +M
Sbjct: 200 GAAAASTFLANHLITMYSHCADLASALRLFAAM 232


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 191/461 (41%), Positives = 266/461 (57%), Gaps = 58/461 (12%)

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
           R D+V  + + D + +  L        A++  YAK   +D AR LFD M  RD V W VM
Sbjct: 106 RGDVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVM 161

Query: 231 -----------------------------------------IGA-------------NKF 236
                                                    +GA             N  
Sbjct: 162 IDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGI 221

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
             +V +GTA++DMY+KCGS++ AR +FD++  K+V++W++MI  Y  HG  ++AL LF  
Sbjct: 222 QFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKS 281

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    + P  ITF+ +L AC H+G V EG  +F+ M D++ + P ++HY CMV+LLGRAG
Sbjct: 282 MCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 341

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
            +++A +L+++M++E D  LWG LLGACR+H  + L E   + L+++   N G Y+LLSN
Sbjct: 342 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSN 401

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA  G W  VA++R +M    +KK PG + IEV NK+H+F  G   HP+ +EIY ML  
Sbjct: 402 IYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEE 461

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           ++  L+  GY P T+  LHD+ E  K  +L  HSEKLAIAFGLI T  GT I+I+KNLRV
Sbjct: 462 INGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRV 521

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH   K +S IT R I+VRD NRFHHF  G+CSC DYW
Sbjct: 522 CADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  367 bits (943), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 313/575 (54%), Gaps = 60/575 (10%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN--- 116
           F ++L +C +  +++   Q H  +   G + +  V + L+++Y+    +  A  + +   
Sbjct: 120 FTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVP 179

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
           G    D  S++ ++    +        E  R  +   +  D  T   V+  C   +D+ +
Sbjct: 180 GEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQL 239

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV----------- 225
           G  +H  +L+ GL  D+FV + L+DMY KC  + +AR +FD +  R++V           
Sbjct: 240 GLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQ 299

Query: 226 ------------------------TWTVMIGANK-------------------FLLDVIL 242
                                   T+ V++ A                     F   VI+
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVIV 359

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
             A+I+MY+K GSIDS+  +F  M  +++I+W+AMI  Y +HG GK+AL +F  M+S+  
Sbjct: 360 RNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEE 419

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN +TF+ +L A SH GLV+EG    + +  +F + P ++HYTCMV LL RAG LDEA 
Sbjct: 420 CPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAE 479

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
             +++  V+ D   W  LL AC +H+N DL    A+S+L+  P + G Y LLSN+YA A 
Sbjct: 480 NFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKAR 539

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW  V  IR LM  R +KK PG +W+++ N IH F    S HP+S +IY+ +  L   ++
Sbjct: 540 RWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALIK 599

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
             GY+P+    LHDV++E K G L  HSEKLA+A+GL+  P    IRI+KNLR+C DCH+
Sbjct: 600 PLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCHT 659

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +K +S +T R+IIVRDANRFHHF  G+C+C D+W
Sbjct: 660 AVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 157/366 (42%), Gaps = 63/366 (17%)

Query: 77  RQVHAQIVAGGTLTN---LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
           + +HAQ +     +N   +   N L+++Y     L  A  LF+ M  R+ VSW+V++ G+
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 134 SKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
               + +     F+  +       + Y     + AC     +  G   H ++ K GL   
Sbjct: 92  LHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH 151

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTR------------------------------ 222
           Q+V +ALV MY++C  ++ A Q+ D +P                                
Sbjct: 152 QYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRR 211

Query: 223 --------DLVTWTVMIGANKFLLDVIL-------------------GTAVIDMYAKCGS 255
                   D VT+  ++G    + D+ L                   G+ +IDMY KCG 
Sbjct: 212 MVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGE 271

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           + +AR +FD ++ +NV+ W+A++ AY  +G  +++L+LF  M     LPN  TF  LL A
Sbjct: 272 VLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNA 331

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           C+    +  G  L  +  +    +  V     ++++  ++G +D +  +   M + +D  
Sbjct: 332 CAGIAALRHG-DLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDM-IYRDII 389

Query: 376 LWGALL 381
            W A++
Sbjct: 390 TWNAMI 395


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 194/583 (33%), Positives = 316/583 (54%), Gaps = 59/583 (10%)

Query: 54  FTRSVDPKFFISSLL--SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           F+    P  F+++++  SC +  +I   +Q H   +  G +++  V N L+Y+Y+L    
Sbjct: 128 FSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGN 187

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            +A  + + +   D   +S  + G+ +   F    E  R   +  + LD+ T    +R C
Sbjct: 188 GEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLC 247

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---------------------- 206
            + +D+ + R IH  +++ G + +     A+++MY KC                      
Sbjct: 248 SNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNT 307

Query: 207 ---------KVIDDARQLFDQMPTRDLV--TWTVMIGANK-------------------- 235
                    K  ++A  LF +M T+++    +T  I  N                     
Sbjct: 308 TIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKS 367

Query: 236 -FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
            +   V++G A+++MYAK GSI+ AR+ F  M  +++++W+ MI  + +HG G++ L+ F
Sbjct: 368 GYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAF 427

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+ +  +PNRITF+ +L ACSH G VE+GL  F+ +   F V+PD++HYTC+V LL +
Sbjct: 428 DRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSK 487

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG   +A   + +  +E D   W ALL AC + +N  L +  A+  + + P + G YVLL
Sbjct: 488 AGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLL 547

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN++A +  W+ VA++R LM +R +KK PG +WI + N+ H F   ++ HP+   IY  +
Sbjct: 548 SNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLIYAKI 607

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             +  K+   GY PD     HDVDEE +  NL  HSEKLA+A+GL+ TPE + + + KN+
Sbjct: 608 KEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPENSPLYVTKNV 667

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+C DCHS IK +S I++R I++RD+NRFHHF  G CSC DYW
Sbjct: 668 RICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 75/341 (21%), Positives = 133/341 (39%), Gaps = 57/341 (16%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-M 154
           N L+ +Y        A  +F+ M ER+ VSW  M+ G+          + F+  +     
Sbjct: 73  NSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDES 132

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + + +    V ++C     I  G+  H   LKSGL   +FV   LV MY+ C    +A +
Sbjct: 133 RPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIR 192

Query: 215 LFDQMPTRDLVTWTVMI------GANKFLLDVILGTAVIDM------------------- 249
           + D +P  DL  ++  +      GA K   +V+   A  D+                   
Sbjct: 193 VLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRD 252

Query: 250 -----------------------------YAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                        Y KCG +  A+ +FD    +N++  + ++ A
Sbjct: 253 LNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDA 312

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           Y      ++AL+LF  M +  V PN  TF   L + +   L++ G  L   +      R 
Sbjct: 313 YFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHG-DLLHGLVLKSGYRN 371

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            V     +V++  ++G +++A K    M+  +D   W  ++
Sbjct: 372 HVMVGNALVNMYAKSGSIEDARKAFSGMTF-RDIVTWNTMI 411



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMM 297
           DV    ++I++Y KCG    AR++FD M ++NV+SW AM+  Y   G   + L LF  M+
Sbjct: 68  DVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMV 127

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEG 325
            S    PN      +  +CS +G +EEG
Sbjct: 128 FSDESRPNEFVATVVFKSCSSSGRIEEG 155



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 45/262 (17%), Positives = 103/262 (39%), Gaps = 59/262 (22%)

Query: 164 VIRACRDRKDIVMGRLIHD---IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           +++ C +   +  G  IH    +  +S    D +   +L+++Y KC     AR++FD MP
Sbjct: 37  LLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMP 96

Query: 221 TRDLVTWTVMIGA-------------------------NKFLLDVILGT----------- 244
            R++V+W  M+                           N+F+  V+  +           
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGK 156

Query: 245 -------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                               ++ MY+ C     A  + D +   ++  +S+ ++ Y   G
Sbjct: 157 QFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECG 216

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
             K+  ++   M    ++ + IT++S L  CS+   +    ++ S M        +V+  
Sbjct: 217 AFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMV-RLGFNSEVEAS 275

Query: 346 TCMVDLLGRAGRLDEALKLIES 367
             ++++ G+ G++  A ++ ++
Sbjct: 276 GAIINMYGKCGKVLYAQRVFDN 297


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  367 bits (942), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 309/570 (54%), Gaps = 59/570 (10%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DS 123
           L +C  + ++ Q+H  I+  G   N +V  K     +   A+  A +L   +++    D+
Sbjct: 14  LQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDA 73

Query: 124 VSWSVMVGGFSKVADFI-NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
             +S ++  +++ +    N    +   +  G+  + Y  PFV++AC   +D+ +G+ +H 
Sbjct: 74  FLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHG 133

Query: 183 IVLKSGLDIDQFVCAALVDMYAKC--------KVIDD----------------------- 211
            ++K G D D FV   +V MY  C        K+ D+                       
Sbjct: 134 SLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSA 193

Query: 212 -ARQLFDQMPTR----DLVTWTVMIGA-------------------NKFLLDVILGTAVI 247
            A  LF +M       D VT   ++ A                    + L  V L  A++
Sbjct: 194 GAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALV 253

Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
           DM+AKCG +D A  +F  M ++ ++SW+++I     HG+G +A+ LF  M +S ++P  I
Sbjct: 254 DMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDI 313

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
            F+ LL ACSH+GLVE G + FS M   F + P ++HY CMVDLL RAG + EAL+ +E 
Sbjct: 314 AFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVER 373

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
           M +E +  +W  L+ ACR+H  + L E  +K L+  +P +  +YVLLSN+Y     W+  
Sbjct: 374 MPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKK 433

Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
           +KIR  M ++ ++K+PG T IE++N+IH+F VGD +H Q  EI +M+  +  +++ AGY 
Sbjct: 434 SKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYA 493

Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
           P T     D+DEE K   L  HSEKLAIAF L+ TP G+ IRI KNLRVCGDCHS  K +
Sbjct: 494 PTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGDCHSASKFI 553

Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           S I  R I++RD +RFHHF  G CSC D+W
Sbjct: 554 SKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 313/588 (53%), Gaps = 90/588 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS-VSWSVMVGGFSK 135
           R VHA +V  G   N  VA+ L+  Y        A AL     E D+ V+W+ ++ G ++
Sbjct: 43  RAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVG---ECDTPVAWNALISGHNR 99

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIVLKSGLDIDQF 194
              F     +F +  R G      T   V+ AC +  +D+++G  +H  V+ SG+  D  
Sbjct: 100 GGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLR 159

Query: 195 VCAALVDMYAKC-------KV------------------------IDDARQLFDQMPTRD 223
           V  ALVDMYA+C       KV                        +D+AR LFD+MP RD
Sbjct: 160 VENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERD 219

Query: 224 LVTWTVMI------------------------GANKFLL--------------------- 238
            V+WT MI                         A++F +                     
Sbjct: 220 TVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRV 279

Query: 239 ---------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    D  +G A+IDMY+KCGSI+ A ++F  M  ++  +W+A+I     +G  ++
Sbjct: 280 YMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEE 339

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+++F  M+     P+ +TF+ +L AC+H GLV++G   F SM + + + P+V HY C++
Sbjct: 340 AIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCII 399

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           DLLGRAG++ EAL  I+ M +  +  +WG LL ACR+H N ++ E+ A+ LLE  P+N  
Sbjct: 400 DLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSM 459

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            Y+LLSN+YA   RW+DV ++R  +  + +KK PG + IE++  IH+F  GD +HP S+E
Sbjct: 460 VYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKE 519

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY  L ++   L   GY PD      +V E+ K   LY HSEKLAIAF L+++   T IR
Sbjct: 520 IYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIR 579

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLR+C DCH+ IK +S +  R ++VRD  RFHHF  G CSC+DYW
Sbjct: 580 IVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 318/597 (53%), Gaps = 74/597 (12%)

Query: 41  NPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100
           NPR P Q   +C           ++ L +C  + ++ Q+H  I+  G   N +V  K   
Sbjct: 24  NPRAPEQ---NC-----------LALLQACNALPKLTQIHTHILKLGLHNNPLVLTKFAS 69

Query: 101 IYAL-HKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQ 155
           I +L H     A  LF+   +    D+  ++ ++  +++     +     +   +   + 
Sbjct: 70  ISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAIL 129

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQ 214
            + +T PFV++AC   + + +G+ +H  V+K G D D  V   +V MY+ C   I+ AR+
Sbjct: 130 PNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARK 189

Query: 215 LFDQMPTRDLV-----------------------------------TWTVMIGANKFLLD 239
           +FD+MP  D V                                   T   M+ A   L  
Sbjct: 190 VFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGA 249

Query: 240 VILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
           + LG                    A+IDM+AKCG I  A ++F  M +K ++SW+++I  
Sbjct: 250 LELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVG 309

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
              HG+G++A  LF  M SS V P+ + F+ LL ACSH+GLVE G   F SM   + + P
Sbjct: 310 MAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVP 369

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
            ++HY CMVD+  R G + EAL+ + +M +E +  +   L+ ACR H    L E   K L
Sbjct: 370 KIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLL 429

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
           ++ +P +  +YVLLSN+YA    W+   KIR++M  + +KK+PG T IE++N+I++F  G
Sbjct: 430 MKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAG 489

Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
           D +H Q +EIY M+  +  +++ +GY P T+  L D++EE K  +L  HSEKLAIAFGL+
Sbjct: 490 DKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLL 549

Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            TP GT IRI+KNLRVC DCHS  K +S I  R II+RD NRFHHF+ G CSC D+W
Sbjct: 550 RTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 207/612 (33%), Positives = 330/612 (53%), Gaps = 94/612 (15%)

Query: 56  RSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNL---IVANKLLYIYALHKALTDAH 112
           R+  P+     + +  ++ ++ Q+HA I+    L +    ++  KL   YA H  +  + 
Sbjct: 23  RNPPPEKLAVFIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSL 82

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           ALF+   + D   ++  +   S        F  + + +   +  + +T   ++++C  + 
Sbjct: 83  ALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS 142

Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDM------------------------------ 202
               G+LIH  VLK GL +D +V   LVD+                              
Sbjct: 143 ----GKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 198

Query: 203 -YAKCKVIDDARQLFDQM------------------------------------PTRDLV 225
            YAK   ++ AR LFD+M                                    P  D +
Sbjct: 199 CYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEI 258

Query: 226 T------------------WT-VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
           T                  W  V + +++  L+V + TA+IDMY+KCGS++ A  +F+  
Sbjct: 259 TVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDT 318

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEG 325
            +K++++W+AMI  Y  HG  + AL LF  M   + + P  ITF+  L AC+H GLV EG
Sbjct: 319 PRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEG 378

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           +++F SM  ++ ++P ++HY C+V LLGRAG+L  A ++I++M++E D  LW ++LG+C+
Sbjct: 379 IQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCK 438

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           +H    L +  A+ L+ +   N G YVLLSN+YA  G ++ VAK+R+LM  + + K PG 
Sbjct: 439 LHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGI 498

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           + IE++NK+H+F  GD  H +S+EIY ML  +SE+++  GY+P+TN  LHD++E  K  +
Sbjct: 499 STIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERS 558

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHH 565
           L  HSE+LAIA+GLI+T  G+ ++I KNLRVC DCH+  K +S IT R I++RD NRFHH
Sbjct: 559 LQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHH 618

Query: 566 FEGGACSCRDYW 577
           F  G+CSC D+W
Sbjct: 619 FSDGSCSCDDFW 630


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 199/573 (34%), Positives = 306/573 (53%), Gaps = 58/573 (10%)

Query: 63  FISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S+L +C +   +   R +HA I+       L++ N LL +Y+   ++ D   +F  M 
Sbjct: 351 FSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMP 410

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI-VMGR 178
             D VS +V+ GG++ + D  N    F      G++ +  T+  +   C+   D+   G 
Sbjct: 411 CYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGM 470

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN---- 234
            +H  V ++GL  D+++  +L+ MYA C  ++ +  +F ++  + +++W  +I AN    
Sbjct: 471 PLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHG 530

Query: 235 --------------------KFLLDVILGT------------------------------ 244
                               +F L   L +                              
Sbjct: 531 RGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCDSHVVN 590

Query: 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304
           A +DMY KCG +D   +       +    W+ +I+ Y  +G  K+A D F  M+S    P
Sbjct: 591 ATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKP 650

Query: 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
           + +TFV+LL ACSH GL+++G+  ++SM   F V P +KH  C+VDLLGR G+  EA K 
Sbjct: 651 DYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKF 710

Query: 365 IESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           I+ M V  ++ +W +LL + R HKN+D+   AAK+LLE  P +   YVLLSN+YA   RW
Sbjct: 711 IDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYATNARW 770

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
            DV K+R  M   +L K P  +W++++N++  F +GD +H  +E+IY  L  +  KL   
Sbjct: 771 VDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEILLKLREV 830

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           GY+ DT+  LHD DEE K  NL++HSEKLA+A+GL+  PEG+ IRI KNLRVC DCH   
Sbjct: 831 GYVADTSSALHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGSTIRIFKNLRVCADCHLVF 890

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K VS +  R I++RD  RFH F+ G+CSC D+W
Sbjct: 891 KLVSMVFHREIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 124/298 (41%), Gaps = 55/298 (18%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QV A +V  G LT++ VAN L+ ++   + + DA  LF+ M+ERD +SW+ M+  +S   
Sbjct: 166 QVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEE 225

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
            +  CF    +     ++ D  TL  ++  C     + +G  IH + + SGL     +  
Sbjct: 226 VYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLIN 285

Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------------ 233
           ALV+MY+    +D+A  LF  M  RD+++W  MI +                        
Sbjct: 286 ALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGP 345

Query: 234 -NKFLLDVILG------------------------------TAVIDMYAKCGSIDSAREI 262
            N       LG                               +++ MY+KC S++    +
Sbjct: 346 PNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERV 405

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           F+ M   +V+S + +   Y        A+ +F  M  + + PN IT ++L   C   G
Sbjct: 406 FESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLG 463



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 129/323 (39%), Gaps = 59/323 (18%)

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR---KDI 174
           M  R S SW   V G ++       F   R      + L  + L  ++ AC  R   +  
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT------ 228
             G  IH +  ++GL  + ++  AL+ +Y    ++ +A++LF +MP R++V+WT      
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 229 --------------------VMIGANKF----------------------------LLDV 240
                               VM  AN                              L  V
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHV 180

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            +  ++I M+     +  A  +FDRM +++ ISW+AMI+ Y +     K   +   M   
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
            V P+  T  SL+  C+ + LV  G  +  S+     +   V     +V++   AG+LDE
Sbjct: 241 EVKPDVTTLCSLVSVCASSDLVALGSGIH-SLCVSSGLHCSVPLINALVNMYSTAGKLDE 299

Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
           A  L  +MS  +D   W  ++ +
Sbjct: 300 AESLFRNMS-RRDVISWNTMISS 321



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 118/294 (40%), Gaps = 55/294 (18%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA     G + N+ +   LL++Y     + +A  LF  M +R+ VSW+ ++   S    
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGC 125

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
                  +R   + G+  ++  L  V+  C   +D V G  +   V+ SGL     V  +
Sbjct: 126 MEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANS 185

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK----------FLLDVILG----- 243
           L+ M+   + + DA +LFD+M  RD ++W  MI               L D+  G     
Sbjct: 186 LITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPD 245

Query: 244 -TAVIDMYAKCGSID--------------------------------------SAREIFD 264
            T +  + + C S D                                       A  +F 
Sbjct: 246 VTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFR 305

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYACS 317
            M +++VISW+ MI++Y       +AL+    +L +    PN +TF S L ACS
Sbjct: 306 NMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACS 359


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 208/558 (37%), Positives = 310/558 (55%), Gaps = 56/558 (10%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           ++Q HA++V  G   +L +  KL  +     A   AH L       DS  +S +    + 
Sbjct: 23  LKQAHARLVVTGHGRSLPLITKLATLAVAAGAAPYAHLLATSHPAPDSFLFSSLTRTAAH 82

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
               +     +R  +   +   S+T   V +AC D   +  G  IH   +  G   D+FV
Sbjct: 83  HGLPVAAIAFYRGLLSAALPFSSFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFV 142

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------IGANKFL----- 237
             ALV +Y+KC  +  AR+LFD +  R +V W  M             IG  K +     
Sbjct: 143 LTALVVLYSKCGQLGVARKLFDAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKA 202

Query: 238 ------------------------------------LDVILGTAVIDMYAKCGSIDSARE 261
                                               + V LG+A+++MYA+CG +D AR 
Sbjct: 203 VPDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARR 262

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
            FD ++++NV++W++MIA YG HG G++A+ LF +M      PN +TFV++L AC+H GL
Sbjct: 263 WFDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGL 322

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGAL 380
           V EG   F+ M   + + P V+HY  MVD+ GRAG LDEA++ I + M  E    +W A+
Sbjct: 323 VMEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAV 382

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           LGAC++HKN +L    A+ L+  +P+NP ++VLLSN+YA +G+   V K+R+ M +RRLK
Sbjct: 383 LGACKMHKNFNLGVEVAERLIALEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLK 442

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++ IE+    H F +G+ +HPQ+ EIY  L  L  ++  AGY+P+T   LH+++EE
Sbjct: 443 KQIGFSLIELGGTSHLFRMGEKSHPQTTEIYHYLEELIHRITAAGYMPETESVLHELEEE 502

Query: 501 VKVGNLYSHSEKLAIAFGL-IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
            + G L  HSEKLA+A+GL ++    T IR++KNLR+CGDCH  IK +SA+  R I+VRD
Sbjct: 503 EREGALRYHSEKLAVAYGLMMSVGSTTPIRVIKNLRICGDCHLAIKFMSAVENREIVVRD 562

Query: 560 ANRFHHFEGGACSCRDYW 577
            +RFHHF+ G CSC +YW
Sbjct: 563 KHRFHHFKDGKCSCLEYW 580


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 209/588 (35%), Positives = 311/588 (52%), Gaps = 89/588 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN----GMKERDSVSWSVMVGGFS 134
           +HA +V  G  +N   A+ L+ +YA       A A+             V W+ ++ G +
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           +   F     +F + +R      + T   V+ AC   KD+++G  +H  VL+SG+  DQ 
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR 197

Query: 195 VCAALVDMYAKCK-------------------------------VIDDARQLFDQMPTRD 223
           V  ALVDMYA+C                                 +D AR LFD MP RD
Sbjct: 198 VENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERD 257

Query: 224 LVTWTVM------------------------IGANKFLL--------------------- 238
            + WT M                        + A++F +                     
Sbjct: 258 TIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARI 317

Query: 239 ---------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
                    DV +G A+IDMY+KCGSI+ A ++F  M  ++  +W+A+I     +G+G++
Sbjct: 318 YMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEE 377

Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
           A+D+F  ML +   P+ +TFV +L AC+H GLV++G   F SM + + + P V HY C++
Sbjct: 378 AIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLI 437

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409
           D+LGRAG+L EAL  I+ M ++ +  +WG LL +CR++ N ++ E+AA+ LLE  P N  
Sbjct: 438 DVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNST 497

Query: 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEE 469
            Y+LLSN+YA + RW+DV +IR ++  + +KK PG + IE+   IH+F   D +HP ++E
Sbjct: 498 AYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKE 557

Query: 470 IYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
           IY  L  +   L  AGY+PD    L +V EE K   LY HSEKLA+ F L+ +     IR
Sbjct: 558 IYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIR 617

Query: 530 IMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           I+KNLR+C DCH+ IK +S +  R +IVRD  RFHHF  G+CSC+DYW
Sbjct: 618 IVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  367 bits (942), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 198/505 (39%), Positives = 294/505 (58%), Gaps = 15/505 (2%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           I Q R++H      G L N++V   ++ +Y     L DA A F  ++ ++SV+W+ M+  
Sbjct: 181 IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 240

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           +          E FRE         +  +    +  R ++ + + R +HD    + L   
Sbjct: 241 YKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDT---TDLAPK 297

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           Q     ++D+ A+   +   R +  +            + A  F  ++++  A++ MY K
Sbjct: 298 QGTFVTVIDVCAELSALKQGRAIHAR------------VRATNFDANLLVSNALVHMYGK 345

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CG +D A ++F  M+ K+ ISW+ +I++Y YHG   +AL L+  M    V P  +TFV L
Sbjct: 346 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 405

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACSH GLV +GL  F  M DD  ++P V H+ C++DLLGR GRL EA  +++SM ++ 
Sbjct: 406 LSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQA 465

Query: 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
           +   W +LLGAC+ H ++     AA  +++R P   G YVLLSN+YA AGRW+DV KIR 
Sbjct: 466 NAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRK 525

Query: 433 LMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNF 492
           +M  R +KK PG +WIE+ + +H+F  GDS+HPQ EEIY  L  + E+++  GY+PDT+ 
Sbjct: 526 IMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSS 585

Query: 493 ELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITR 552
             HD++EE K   L  HSEKLAI +G +  P  + +RI+KNLRVC DCH+  K +S IT 
Sbjct: 586 VFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITG 645

Query: 553 RVIIVRDANRFHHFEGGACSCRDYW 577
           R I+VRDA RFH FE G+CSCRDYW
Sbjct: 646 RKIVVRDAARFHLFENGSCSCRDYW 670



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 162/348 (46%), Gaps = 34/348 (9%)

Query: 58  VDPKFFISSLLSC---RNIFQIRQVHAQIVA--GGTLTNLIVANKLLYIYALHKALTDAH 112
           +DP  + + +  C     I   R++H+ I++          +AN L+ +Y     L  A 
Sbjct: 58  LDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYAR 117

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI--RACRD 170
            LF  M  R+  +W+V +  FS           FR   + G + D  T   ++   A   
Sbjct: 118 ELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMG 177

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              I  GR IH     SGL  +  V  A++ MY KC  +DDAR  F+++  ++ VTW  M
Sbjct: 178 AAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAM 237

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
           +    + LD              G    A E+F  M   + + W+AMIAAY  HG+GK+A
Sbjct: 238 M--TNYKLD--------------GRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQA 281

Query: 291 LDLF-PMMLSSRVLPNRITFVSLLYACSHTGLVEEG----LRLFSSMWDDFAVRPDVKHY 345
           LDL+  M  ++ + P + TFV+++  C+    +++G     R+ ++ +D      ++   
Sbjct: 282 LDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFD-----ANLLVS 336

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             +V + G+ G LDEAL +  SM + KDE  W  ++ +   H + D A
Sbjct: 337 NALVHMYGKCGCLDEALDVFHSMKL-KDEISWNTIISSYAYHGHSDQA 383


>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 211/557 (37%), Positives = 310/557 (55%), Gaps = 85/557 (15%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           ++QVHA ++  G+  +  +  KLL +     ++     LF  +   DS  ++ ++   SK
Sbjct: 35  LQQVHAHLIVSGSYRSRALLTKLLTLACTAGSILYTRQLFFSITNPDSFLFNAIIKASSK 94

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                +    +R  +   +   +YT   VI+AC D   + +GR IH  VL  G D D FV
Sbjct: 95  FGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFV 154

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTR--------------------------------- 222
            AAL+  YAK   + +A+++FD+MP R                                 
Sbjct: 155 QAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGV 214

Query: 223 --DLVTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSARE 261
             D  T+  ++ A                   N F ++V+LGT++I+MY +CG++  ARE
Sbjct: 215 EFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKARE 274

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M ++NV++W+AMI+ YG HG G++A++LF +M        RI              
Sbjct: 275 VFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLM--------RI-------------- 312

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-EKDEGLWGAL 380
              G+R       D+ + P V+H+ CMVD+LGRAG L+EA + I+ +   E+   LW A+
Sbjct: 313 --HGMR------QDYGLVPRVEHHVCMVDMLGRAGFLNEAFQYIKDLKQGEQAPALWTAM 364

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           LGAC++HKN+DL    A+ LL  +P+NP HYVLLSNVYA AGR + V  +R++M R+ LK
Sbjct: 365 LGACKMHKNLDLGVQVAEHLLAAEPENPSHYVLLSNVYALAGRMERVEMVRNMMIRKGLK 424

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K  G++ IEV  K + FS+GD +HP++ EIY+ L  L  + + AGY+P     +H+++EE
Sbjct: 425 KQVGYSIIEVGQKSYLFSMGDRSHPETTEIYKYLDELMLRSKEAGYVPAPELVMHELEEE 484

Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
            +   L  HSEKLAIAFGL+ T  G  IRI+KNLR+C DCHS IK +S I  R IIVRD 
Sbjct: 485 EREYALRYHSEKLAIAFGLMKTSHGMTIRIVKNLRMCEDCHSAIKFISNIANREIIVRDK 544

Query: 561 NRFHHFEGGACSCRDYW 577
            RFHHF+ G CSC+DYW
Sbjct: 545 LRFHHFKNGLCSCQDYW 561


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/481 (40%), Positives = 269/481 (55%), Gaps = 48/481 (9%)

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157
           ++  YA H  +  A   F+    R+S SW+ M+ G+++          FR     G + D
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
             T    I AC     +V GR +H I   +GL                            
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGL---------------------------- 92

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
                              +  V + TA+++MYAKCG++D A  +F  +R KN+ISWS M
Sbjct: 93  -------------------VAHVEISTAIVNMYAKCGNLDDATIVFSSIRNKNLISWSTM 133

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           I A+  +G   +ALD F  M    + P+ +TF S+L ACSH GL E G   F  +  DF 
Sbjct: 134 ITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEHGFFHFDLLVHDFG 193

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
           + P + H+ CMVDLLGR+GRL EA +L+++M    D+  W  LL ACR+HK+V+  + AA
Sbjct: 194 ITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAACRVHKSVERGKRAA 253

Query: 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQF 457
           + LLE   + PG+YVLLSN++A AG   + AK+RDLM  R ++K PGW+ IE+ ++ H+F
Sbjct: 254 EVLLELTSEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARGVRKKPGWSTIEINDRFHEF 313

Query: 458 SVGDS-THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           + G+   HP+ ++I   L  LS  ++  GY+PDT   L  V+E+ K   L+ HSEKLAIA
Sbjct: 314 TAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDEKESLLFFHSEKLAIA 373

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
            GLI+TP GT +R++KNLRVC DCHS  K +S IT R IIVRD NRFHH E G CSC DY
Sbjct: 374 CGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLNRFHHTENGVCSCGDY 433

Query: 577 W 577
           W
Sbjct: 434 W 434



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 25/243 (10%)

Query: 6   KHGFLV----SISAKLRFFSSSTTAAIA-LEPHGHEQNPMNP-RVPMQMGPDCQ---FTR 56
           +HG ++    +  A  R  SSS  A IA    +GH +  ++  R     G  C    F  
Sbjct: 7   RHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCDMVTFVA 66

Query: 57  SVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           ++D    +S+L++ R++      H+   A G + ++ ++  ++ +YA    L DA  +F+
Sbjct: 67  AIDACAGLSALVAGRSL------HSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            ++ ++ +SWS M+  F +        + F      G+  D+ T   ++ AC        
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 177 G-----RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVM 230
           G      L+HD  +   +  D F C  +VD+  +   + +A +L   MP   D VTW  +
Sbjct: 181 GFFHFDLLVHDFGITPTM--DHFKC--MVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTL 236

Query: 231 IGA 233
           + A
Sbjct: 237 LAA 239


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/479 (40%), Positives = 273/479 (56%), Gaps = 66/479 (13%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ D +  P   +AC       +G+ +H   +K+G D D FV +++VDMYAKC  I DA
Sbjct: 5   GVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDA 64

Query: 213 RQLFDQMPTRDLVTWTVMI-------------------------------------GANK 235
           R++FD+MP R++V+W+ MI                                       N 
Sbjct: 65  RKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNS 124

Query: 236 FLLDV-----------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
            LL++                  +G+++I +Y+KCG I+ A  +F  +  +N+  W+AM+
Sbjct: 125 TLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAML 184

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
            A   H   +KA DLF  M    + PN ITF+ +LYACSH GLVE+G   F  M  ++ +
Sbjct: 185 IACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELM-KEYGI 243

Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
            P  +HY  MVDLLGRAG+L +A+ +I+ M +E  E +WGALL  CRIH + +LA   A 
Sbjct: 244 EPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELASFVAD 303

Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
            + E  P           V + AGR+++ A+ R ++  + +KK  G +W+E  N+IH F+
Sbjct: 304 RVFELGP-----------VSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGNRIHTFA 352

Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFG 518
            GD +HP +++IY+ L  L E++E AGYI DT+F L +VD E K   +  HSE+LAIAFG
Sbjct: 353 AGDRSHPYTKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFG 412

Query: 519 LIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LI+ P    IR+MKNLRVCGDCH+ IK +S    R IIVRD NRFH FE G CSCRDYW
Sbjct: 413 LISFPPERPIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCSCRDYW 471


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 297/541 (54%), Gaps = 64/541 (11%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           N +++ Y  +  + +   LF  M  RD +SW+ M+GG             F++ +R G++
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID----- 210
               T   V+ AC +  +  +G  +H  V+K G    +F+  +L+  YA C  I+     
Sbjct: 200 PTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKI 259

Query: 211 --------------------------DARQLFDQMPT----------------------- 221
                                     DA ++F  M                         
Sbjct: 260 FNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEAL 319

Query: 222 ---RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
              +++ T  + +G      DV +G +++ MY +CG+++SA  +F  + +K+++SW+++I
Sbjct: 320 DKGKEIHTMAIKLGLET---DVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSII 376

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS--SMWDDF 336
                HG G  AL  F  M+   V PN ITF  LL ACS +G++ +G   F   S +   
Sbjct: 377 VGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSN 436

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
            +RP  +HY CMVD+LGR G+LDEA +L+  M V+ +  +W ALL ACR+H N+++AE A
Sbjct: 437 VLRP--QHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERA 494

Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
           AK +L+ +P     YVLLSN+YA+AGRW DV+++R  M +  L K PG +W+ +  K H+
Sbjct: 495 AKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHE 554

Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
           F   D +HP SE IY  L  L +KL+  GY+PD  F LHDV++E K   L  HSE+LAIA
Sbjct: 555 FLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIA 614

Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           FGL++T EG+ I +MKNLRVCGDCHS IK +S I  R I+VRD+ RFHHF+ G CSC DY
Sbjct: 615 FGLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDY 674

Query: 577 W 577
           W
Sbjct: 675 W 675



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 104/230 (45%), Gaps = 34/230 (14%)

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217
           SYT          R D    RLI D +    L +   + A     Y +   + DA +LFD
Sbjct: 14  SYTTSLANHLKNQRLD--QARLIFDKIPSPNLHLYTKMIAG----YTRNDRLCDALKLFD 67

Query: 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           +M  RD+V+W  MI   K  LD             CG++  A  +FD M +KNVISW+ M
Sbjct: 68  RMSVRDVVSWNSMI---KGCLD-------------CGNLGMATRLFDEMPEKNVISWTTM 111

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           +  Y   G+ + A  LF  M    V      + ++++     G VEEG+RLF  M     
Sbjct: 112 VNGYLKFGRVELAQRLFLDMHVKDV----AAWNAMVHGYFENGRVEEGVRLFEEM----P 163

Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           VR DV  +T M+  L   G+ +EAL + + M    VE     +  +L AC
Sbjct: 164 VR-DVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSAC 212



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 68/128 (53%), Gaps = 15/128 (11%)

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIG----------ANKFLLD-----VILGTAVIDMY 250
           C  +  A +LFD+MP +++++WT M+           A +  LD     V    A++  Y
Sbjct: 87  CGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAAWNAMVHGY 146

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            + G ++    +F+ M  ++VISW++MI     +G+ ++AL +F  ML S V P   TF 
Sbjct: 147 FENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFA 206

Query: 311 SLLYACSH 318
            +L AC++
Sbjct: 207 CVLSACAN 214


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 316/571 (55%), Gaps = 57/571 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMKER 121
           +S L  C+++ + +QVHA I+  G   +    + L+   AL +  ++  A ++F  ++E 
Sbjct: 34  LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEP 93

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
            S  ++ M+ G     +       + E +  G++ D++T PFV++AC     +  G  IH
Sbjct: 94  GSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIH 153

Query: 182 DIVLKSGLDIDQFV----------CAAL---------------------------VDMYA 204
             V K+GL+ D FV          C A+                           V+M+ 
Sbjct: 154 AHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWH 213

Query: 205 KCKVI-----DDARQLFDQMPTRDLVTWTVMIGANKF-------------LLDVILGTAV 246
           +C ++      + R   ++      ++    +G+  F              L+V + T++
Sbjct: 214 ECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSL 273

Query: 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
           IDMY K GS++    +F  M QKN  S++ +I     HG+G++AL +F  ML   + P+ 
Sbjct: 274 IDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDD 333

Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
           + +V +L ACSH GLV EGL+ F+ +  +  ++P ++HY CMVDL+GRAG L  A  LI+
Sbjct: 334 VVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIK 393

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
           SM ++ ++ +W +LL AC++H N+++ E+AA+++ +    NPG Y++L+N+YA A +W D
Sbjct: 394 SMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWAD 453

Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
           VA+IR  M  + L + PG++ +E    +++F   D + PQ E IY M+  +  +L+  GY
Sbjct: 454 VARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGY 513

Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
            PD +  L DVDE+ K   L  HS+KLAIAF LI T EG+ IRI +N+R+C DCH++ K 
Sbjct: 514 TPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKF 573

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S I  R I VRD NRFHHF+ G CSC+DYW
Sbjct: 574 ISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/522 (37%), Positives = 302/522 (57%), Gaps = 71/522 (13%)

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-------- 157
           + L  A  LF+ M +RD  +WS +V G+++          +R      MQ +        
Sbjct: 109 RHLPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRR-----MQEEPGNDGADN 163

Query: 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI---DQFVCAALVDMYAKCKVIDDARQ 214
            +T    + A    +    GR +H  V++ G+D    D  + +AL DMYAKC  +DDAR+
Sbjct: 164 EFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARR 223

Query: 215 LFDQMPTRDLVTWTVM-------------------------IGANKFLLDVIL------- 242
           +FD+MP RD V+WT M                         +  N+F    +L       
Sbjct: 224 VFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFA 283

Query: 243 ---------------GT--------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
                          GT        A++ MY+KCG + SA  +F+ M + +++SW+A+I+
Sbjct: 284 VESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVIS 343

Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
            Y  +GQ ++AL  F M L S + P+ +TFV +L AC+H GLV++GL +F S+ + + + 
Sbjct: 344 GYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIE 403

Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
               HY C++DLL R+G+ + A K+I +M+V+ ++ LW +LLG CRIHKNV LA  AA++
Sbjct: 404 HTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEA 463

Query: 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSV 459
           L E +P+NP  YV L+N+YA+ G + +V  +R +M  + + K+P  +WIEV  ++H F V
Sbjct: 464 LFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLV 523

Query: 460 GDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGL 519
           GD +HP+++EIY +L  L  K+   GY+ D  F LHDV++E K  ++  HSE+LA+AFG+
Sbjct: 524 GDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGI 583

Query: 520 IATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           IA+PEG+ I++ KNLR+CGDCH+ IK +S I +R IIVRD+N
Sbjct: 584 IASPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSN 625


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 209/586 (35%), Positives = 320/586 (54%), Gaps = 59/586 (10%)

Query: 48  MGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA 107
           M P     RS +   + S LL+   +  ++Q HA++V  G   +L +  KL  +     A
Sbjct: 1   MDPHHHHRRSPE---YNSLLLAGARLGPLKQAHARLVVSGHAHSLPLTTKLATLAVAAGA 57

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
            + A  L       DS  +  +    ++          +R  +   +   S+    V +A
Sbjct: 58  ASYAGLLAASHPSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKA 117

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----- 222
           C D   +  G  +H   +  G   D+FV  ALV +Y+KC  +D AR+LFD +  R     
Sbjct: 118 CADLSALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAW 177

Query: 223 ------------------------------DLVTWTVMIGA------------------- 233
                                         D  T+   + A                   
Sbjct: 178 NAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVS 237

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
            +  ++V+LG A+++MYA+CG ++ ARE FD ++++NV++W++MIA YG HG G +A+ L
Sbjct: 238 ERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKL 297

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F +M      PN +TFV++L AC+H GLV +G   F+SM   + + P  +HY  MVD+ G
Sbjct: 298 FDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYG 357

Query: 354 RAGRLDEALKLI-ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           RAG LD+A++ I +S+  E    +W A+LGAC++HKN  L    A+ L+  +P+NP H V
Sbjct: 358 RAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRV 417

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           LLSN+YA +G+   V K+R+ M +RRLKK  G++ IE+    H F +G+ +HP++ EIY+
Sbjct: 418 LLSNIYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQ 477

Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH-IRIM 531
            L  L  ++  AGY+P+T+  LH+++EE +   L  H EKLA+AFGL+ T   T  IRI+
Sbjct: 478 YLEKLIHRITDAGYMPETDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTAPIRII 537

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLR+CGDCH  IK++SA+  R IIVRD +RFHHF+ G CSC++YW
Sbjct: 538 KNLRICGDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 192/501 (38%), Positives = 292/501 (58%), Gaps = 14/501 (2%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            R +H  +V  G  +N+ + N LL +Y+      DA  +F  M ERD +SW+ M+  + + 
Sbjct: 597  RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 656

Query: 137  ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               ++  +   E ++ G + D  T   +I    + ++       + ++ + G+  +    
Sbjct: 657  GKCLDGLKILAELLQMG-KPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITM 715

Query: 197  AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
             +L    A   V+++ +QL   +         + +G   F  D+ +  A +DMY KCG +
Sbjct: 716  VSLAAT-ANLAVLEEGQQLHGLV---------IKLG---FESDLHVTNAAMDMYGKCGEM 762

Query: 257  DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
                ++  +   ++ +SW+ +I+A+  HG  +KA + F  ML     P+ +TFVSLL AC
Sbjct: 763  HDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSAC 822

Query: 317  SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
            +H GLV+EGL  + SM  +F V P ++H  C++DLLGR+GRL  A   I+ M V  ++  
Sbjct: 823  NHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLA 882

Query: 377  WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
            W +LL ACRIH N++LA   A+ LLE  P +   YVL SNV A +G+W+DV  +R  M  
Sbjct: 883  WRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGS 942

Query: 437  RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
              +KK P  +W+++++K+H F +G+  HPQ+  I   L  L +  + AGY+PDT+F LHD
Sbjct: 943  NNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHD 1002

Query: 497  VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
            +DEE K  NL++HSE+LA+AFGLI TPE + +RI KNLRVCGDCHS  K VS I  R I+
Sbjct: 1003 MDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIV 1062

Query: 557  VRDANRFHHFEGGACSCRDYW 577
            +RD  RFHHF GG CSC DYW
Sbjct: 1063 LRDPYRFHHFSGGKCSCGDYW 1083



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 11/340 (3%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           + DA  LF  M ERD VSW+ M+GG++      + F  FR  +R G+  D YTL  V+RA
Sbjct: 143 MEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRA 202

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
             +   +++   IH I+ + G      V   L++ YAK   +  A+ L   M  +DL + 
Sbjct: 203 SAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSS 262

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
           T +I          +G A+IDMYAK G I+ A+  FD M +KNVISW+++I+ Y  HG G
Sbjct: 263 TALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYG 322

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
             A   +  +       N  ++ ++L      GL EE + LF  MW    V P+      
Sbjct: 323 HMAHARY--VFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMW-GLGVEPNGFMVAS 379

Query: 348 MVDLLGRAGRL-DEALKLIESMSVEKDEGLWGALLGACRIH--KNVDLAEMAAKSLLERQ 404
           ++    R+G + DE  ++     V K   L    +G   +H   ++ L   A K   E  
Sbjct: 380 LITACSRSGYMADEGFQV--HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP 437

Query: 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
             N   +  L   Y+++G   +  ++ ++  R R + + G
Sbjct: 438 DHNVVSWTSLMVGYSDSG---NPGEVLNVYQRMRQEGVSG 474



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 155/399 (38%), Gaps = 91/399 (22%)

Query: 58  VDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           +DP  ++  L  C +    +Q   +H  ++  G  ++L +  KL+  Y     +  A  +
Sbjct: 28  LDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNV 87

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
           F+GM ER  VSW+ MV G+S+   F   F  F +   CG++ +                 
Sbjct: 88  FDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANH---------------- 131

Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA- 233
                                  ALVD ++KC  ++DA  LF  M  RD+V+W  MIG  
Sbjct: 132 -----------------------ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGY 168

Query: 234 -------NKFLL--DVILGTAVIDMY---------AKCGSIDSAREIFDRMRQKNVISW- 274
                  + F +   ++ G  V D Y         A+ G +  A +I   + Q    S+ 
Sbjct: 169 AVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYD 228

Query: 275 ---SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
                +I AY  +G  + A DL   ML   +  +     +L+   +H G+   G      
Sbjct: 229 IVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSS----TALITGYAHEGIYTMG------ 278

Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
                           ++D+  ++G +++A +  + M  EK+   W +L+     H    
Sbjct: 279 --------------NALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKHGYGH 323

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           +A  A     E + +N   +  + + Y   G +++   +
Sbjct: 324 MAH-ARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGL 361



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 168/387 (43%), Gaps = 36/387 (9%)

Query: 48  MGPDCQ-FTRSVDPK-FFISSLLSC--RNIFQIR---QVHAQIVAGGTLTNLIVANKLLY 100
           +G  CQ +   V+P  F ++SL++   R+ +      QVH  +V  G L ++ V   L++
Sbjct: 359 VGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVH 418

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
            Y     + +A  LF  M + + VSW+ ++ G+S   +       ++   + G+  +  T
Sbjct: 419 FYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNT 478

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
              V  +C   +D V+G  +   +++ G +    V  +L+ M++    +++A  +FD M 
Sbjct: 479 FATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN 538

Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNVISWSA 276
             D+++W  MI A                YA  G    +   F  MR    + N  + S+
Sbjct: 539 ECDIISWNAMISA----------------YAHHGLCRESLRCFHWMRHLHNETNSTTLSS 582

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           +++        K    +  +++   +  N     +LL   S  G  E+   +F +M    
Sbjct: 583 LLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAM---- 638

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEK-DEGLWGALLGACRIHKNVDLAE 394
               D+  +  M+    + G+  + LK++ E + + K D   W AL+G    ++  + A 
Sbjct: 639 -TERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNEAV 697

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANA 421
            A K  L R+   P +Y+ + ++ A A
Sbjct: 698 KAYK--LIREKGIPANYITMVSLAATA 722



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 95/219 (43%), Gaps = 31/219 (14%)

Query: 234 NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
           N F  D+ L T +I  Y K G + +AR +FD M +++V+SW+AM++ Y  +G+ +KA  L
Sbjct: 59  NGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVL 118

Query: 294 FPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
           F  M    V  N     +L+   S  G +E+   LF +M     +  DV  +  M+    
Sbjct: 119 FSDMRHCGVKANH----ALVDFHSKCGKMEDASYLFGTM-----MERDVVSWNAMIGGYA 169

Query: 354 RAGRLDEALKLIESM-------------SVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
             G  D++  +  SM             SV +     G L+ A +IH  +      +  +
Sbjct: 170 VQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDI 229

Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           +           LL N YA  G  +    +R  M ++ L
Sbjct: 230 VTG---------LLINAYAKNGSLRSAKDLRKGMLKKDL 259


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 196/573 (34%), Positives = 307/573 (53%), Gaps = 63/573 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F+ SLL+   +   +Q+H+  +  G  +N  V   +  +Y     L  A  +F  M E++
Sbjct: 117 FLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKN 176

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           +V+W+ ++ G+++    ++    F + +  G++LD Y    V++AC   +++  GR IH 
Sbjct: 177 AVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHG 236

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW--------------- 227
            ++K GL+ +  V   LVD Y KC  ++ A + F+ +   + V+W               
Sbjct: 237 HIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEE 296

Query: 228 ---------TVMIGANKFLLDVILG------------------------------TAVID 248
                    T  +  N F    I                                +A+I 
Sbjct: 297 ALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMIT 356

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           MY++CG +D A  +F+ +   + ++W+A+IA Y Y G   +AL LF  M    V PN +T
Sbjct: 357 MYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVT 416

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           F+++L ACSH+GLV EG +   SM  ++ V   + HY CMVD+  RAG L EAL+LI SM
Sbjct: 417 FIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSM 476

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428
               D   W  LLG C  ++N+++ E+AA++L +  P++   Y+L+ N+YA+ G+W++ A
Sbjct: 477 PFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAA 536

Query: 429 KIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL--ELAGY 486
            +R +M  R L+K    +WI V+ K+H+F VGD  HPQ+EEIY  L  L++ +  E  G 
Sbjct: 537 NVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIKEETGL 596

Query: 487 I--PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
           +   D +  L +  E++ V     HSE+LA+AFGLI+TP    + + KNLR C DCH F 
Sbjct: 597 LTEEDVSNSLPERKEQLLV-----HSERLALAFGLISTPSSAPVVVFKNLRACKDCHDFG 651

Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           K VS IT R I+VRD+ RFHHF+ G CSC DYW
Sbjct: 652 KQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 173/398 (43%), Gaps = 67/398 (16%)

Query: 57  SVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           SV P+ +     +C   +++F  R  H Q+          + N +L +Y    +L DA  
Sbjct: 7   SVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARK 66

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F+ M+ER+ VSW+ ++  +++   F   F  F   +    + +  T    +R+  +   
Sbjct: 67  VFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSG 126

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIG 232
           + +G+ IH   ++SGL  +  V  A+ +MY KC  ++ A  +F++M  ++ V WT +M+G
Sbjct: 127 LEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVG 186

Query: 233 -----------------------ANKFLLDVIL--------------------------- 242
                                   ++++  ++L                           
Sbjct: 187 YTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESE 246

Query: 243 ---GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
              GT ++D Y KC +++SA + F+ + + N +SWSA+I  Y   G+ ++AL  F  + +
Sbjct: 247 VSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRT 306

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRA 355
             V  N  T+ S+  ACS       G +  +      A++  +  Y    + M+ +  R 
Sbjct: 307 RSVDINSFTYTSIFQACSALADFNSGAQAHAD-----AIKSSLVAYQHGESAMITMYSRC 361

Query: 356 GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           GRLD A ++ ES+  + D   W A++       N   A
Sbjct: 362 GRLDYATRVFESID-DPDAVAWTAIIAGYAYQGNAPEA 398



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 11/167 (6%)

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
            L  +V+ MY KCGS+  AR++FD MR++N++SW+ +I+AY  +G   K   +F  ML  
Sbjct: 46  FLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLEL 105

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDLLGRAG 356
              PN  T++  L +  +   +E G ++ S      A+R     +    T + ++  + G
Sbjct: 106 ETKPNGSTYIGFLRSLLNPSGLEIGKQIHSH-----AIRSGLGSNASVNTAISNMYVKCG 160

Query: 357 RLDEALKLIESMSVEKDEGLW-GALLGACRIHKNVDLAEMAAKSLLE 402
            L+ A  + E MS EK+   W G ++G  +  + +D   + AK + E
Sbjct: 161 WLEGAELVFEKMS-EKNAVAWTGIMVGYTQAERQMDALALFAKMVNE 206


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/516 (37%), Positives = 288/516 (55%), Gaps = 49/516 (9%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +S   +  ++ + R+VH+++   G   ++IV   L+ +Y   +++ +A A F  +   + 
Sbjct: 17  LSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNV 76

Query: 124 VSWSVMVGGFSKVADFINCFETFREF--IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
           VSWS M+  +++        E +RE    R GM  +  T   ++ AC     +  GR IH
Sbjct: 77  VSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIH 136

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
             V + G D D  VC ALV+ Y +C  + DA+ +FD M  RD+++W+ MI A        
Sbjct: 137 AAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISA-------- 188

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
                   +A+ G +D A E++ R                               MLS  
Sbjct: 189 --------FAQRGRVDEAMELYHR-------------------------------MLSEG 209

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            LP+ I F+S+L+ACS++G+VE     F S+  D  V P ++HY CMVD+LGRAG+L +A
Sbjct: 210 TLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDA 269

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             L+  M       L+  +L AC+++ +V+  E AA+ + E  P+N   Y+ L+N+Y+ A
Sbjct: 270 EDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAA 329

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            R +D A+IR LM  R +KK PG +WIEV +++H+F  GD  HPQ +EIY  +  L  ++
Sbjct: 330 KRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQM 389

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           + AGY  DT   L DV+E+ K   L+ HSEKLAIAFGLI+TP G  +RI+KNLRVC DCH
Sbjct: 390 KEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCH 449

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  K +S +T R I+VRD NRFHHF  G CSC DYW
Sbjct: 450 AATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 108/244 (44%), Gaps = 16/244 (6%)

Query: 10  LVSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLS 69
           +VS SA L  ++ +  A +ALE +    +      P ++     F   +D   F+ +L  
Sbjct: 76  VVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRV----TFITLLDACSFLGALA- 130

Query: 70  CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
                + R++HA +   G  T+L+V N L+  Y    +L DA  +F+GM+ RD +SWS M
Sbjct: 131 -----EGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSM 185

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI-VMGRLIHDIVLKSG 188
           +  F++        E +   +  G   D      V+ AC +   +   G     IV  + 
Sbjct: 186 ISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQ 245

Query: 189 LD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTA 245
           ++  ++ + C  +VD+  +   + DA  L   MP     + +  M+ A K   DV  G A
Sbjct: 246 VEPTLEHYAC--MVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEA 303

Query: 246 VIDM 249
             ++
Sbjct: 304 AAEV 307


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 221/586 (37%), Positives = 318/586 (54%), Gaps = 64/586 (10%)

Query: 55   TRSVDPKF-FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
            T S+   F  IS+L SC ++  I    Q+H   +  G  T++ V+N LL +YA     T+
Sbjct: 955  TGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTE 1014

Query: 111  AHALFNGMKERDSVSWSVMVGGFSKV-ADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
               +F+ M E D VSW+ ++G  S   A      + F E +R G  L   T   ++ A  
Sbjct: 1015 CLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVS 1074

Query: 170  DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWT 228
                  +   IH +VLK  L  D  +  AL+  Y KC  +++  ++F +M  TRD V+W 
Sbjct: 1075 SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWN 1134

Query: 229  VMIGA---NKFL---LDVI----------------------------------------- 241
             MI     N+ L   +D++                                         
Sbjct: 1135 SMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRA 1194

Query: 242  -------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
                   +G+A++DMY+KCG ID A   F+ M  +NV SW++MI+ Y  HG G+KAL LF
Sbjct: 1195 CMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLF 1254

Query: 295  PMMLSSRVLPNRIT-FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353
              M+     P+ +   + +L ACSH G VEEG   F SM + + + P V+H++CMVDLLG
Sbjct: 1255 TRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLG 1314

Query: 354  RAGRLDEALKLIESMSVEKDEGLWGALLGA-CRIH-KNVDLAEMAAKSLLERQPQNPGHY 411
            RAG+LDE    I SM ++ +  +W  +LGA CR + +N +L   AA+ LLE +PQN  +Y
Sbjct: 1315 RAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNY 1374

Query: 412  VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
            VLL+N+YA+  +W+DVAK R  M    +KK  G +W+ +++ +H F  GD  HP+ + IY
Sbjct: 1375 VLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIY 1434

Query: 472  RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
              L  L+ K+  AGYIP T + L D++ E K   L  HSEK+A+AF ++       IRIM
Sbjct: 1435 DKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSALPIRIM 1493

Query: 532  KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLRVCGDCHS   ++S I  R I++RD+NRFHHFE G CSC DYW
Sbjct: 1494 KNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 182/399 (45%), Gaps = 62/399 (15%)

Query: 77   RQVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
            R+VHA ++  G   N + + N L+ +YA   A+ DA ++F  M E+DSVSW+ ++ G  +
Sbjct: 879  REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 938

Query: 136  VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
                 +  E+F    R G    ++TL   + +C     I++G  IH   LK GLD D  V
Sbjct: 939  NECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSV 998

Query: 196  CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG-----------ANKFLLDVI--- 241
              AL+ +YA+     +  ++F  MP  D V+W  +IG           A K+ L+++   
Sbjct: 999  SNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGG 1058

Query: 242  -----------------------------------------LGTAVIDMYAKCGSIDSAR 260
                                                     +G A++  Y KCG ++   
Sbjct: 1059 WGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECE 1118

Query: 261  EIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
            +IF RM + ++ +SW++MI+ Y ++    KA+DL   M+      +  TF ++L AC+  
Sbjct: 1119 KIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASV 1178

Query: 320  GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
              +E G+ + +       +  DV   + +VD+  + GR+D A +  E M + ++   W +
Sbjct: 1179 ATLERGMEVHACGIRA-CMESDVVVGSALVDMYSKCGRIDYASRFFELMPL-RNVYSWNS 1236

Query: 380  LLGACRIHKNVDLA-EMAAKSLLERQPQNPGHYVLLSNV 417
            ++     H + + A ++  + +L+ QP  P H   L  V
Sbjct: 1237 MISGYARHGHGEKALKLFTRMMLDGQP--PDHVAPLLGV 1273



 Score = 98.2 bits (243), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 150/355 (42%), Gaps = 60/355 (16%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           + R++H Q +  G + NL ++N L+ IY     L  A  LF+ M  R+ V+W+ ++ G++
Sbjct: 562 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 621

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR--KDIVMGRLIHDIVLKSGLDID 192
           +          FR+ +R G   + Y     +RAC++       +G  IH ++ K+    D
Sbjct: 622 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 681

Query: 193 QFVCAALVDMYAKC-KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
             VC  L+ MY  C    +DAR +FD++  R+ ++W                 ++I +Y+
Sbjct: 682 VVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISW----------------NSIISVYS 725

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           + G   SA ++F  M+++                            L     PN  TF S
Sbjct: 726 RRGDXVSAYDLFSSMQKEG---------------------------LGFSFKPNEYTFGS 758

Query: 312 LLY-ACSHTGLVEEGLRLFSSMW---DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           L+  ACS    V+ GL +   M    +      D+   + +V    R G  D+A  + E 
Sbjct: 759 LITAACSS---VDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQ 815

Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ---NPGHYVLLSNVYA 419
           M V     + G ++G  +  +     E AAK   E +     N   YV+L + ++
Sbjct: 816 MGVRNVVSMNGLMVGLVKQKQ----GEAAAKVFHEMKDLVGINSDSYVVLLSAFS 866



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 165/373 (44%), Gaps = 71/373 (19%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIY-ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+H  I      ++++V N L+ +Y +   +  DA ++F+ +  R+S+SW+ ++  +S+ 
Sbjct: 668  QIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRR 727

Query: 137  ADFINCFETFREFIRCGMQL----DSYTLPFVIRACRDRKDIVMGRLIHDI--VLKSGLD 190
             D ++ ++ F    + G+      + YT   +I A     D  +  L   +  V KSG  
Sbjct: 728  GDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFL 787

Query: 191  IDQFVCAALVDMYAKCKVIDDAR-------------------------------QLFDQM 219
             D +V +ALV  +A+  + DDA+                               ++F +M
Sbjct: 788  QDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM 847

Query: 220  PTRDLV-----TWTVMIGA-NKFLL-----------------------DVILGTAVIDMY 250
              +DLV     ++ V++ A ++F +                        V +G  +++MY
Sbjct: 848  --KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMY 905

Query: 251  AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            AK G+I  A  +F+ M +K+ +SW+++I+    +   + A + F  M  +  +P+  T +
Sbjct: 906  AKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLI 965

Query: 311  SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            S L +C+  G +  G ++         +  DV     ++ L    G   E LK+  S+  
Sbjct: 966  STLSSCASLGWIMLGEQIHCDGL-KLGLDTDVSVSNALLALYAETGCFTECLKVF-SLMP 1023

Query: 371  EKDEGLWGALLGA 383
            E D+  W +++GA
Sbjct: 1024 EYDQVSWNSVIGA 1036


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/489 (40%), Positives = 277/489 (56%), Gaps = 49/489 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N +L  Y     L  A  LF  M  +D VSWS M+ GF+    F   F  FRE  
Sbjct: 202 NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQ 261

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           + GM+ +  +L   + AC D   I  G+++H  + KSG                      
Sbjct: 262 QVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSG---------------------- 299

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK- 269
                                    FL  V +  A++D Y+KCG++  AR +F+RM +K 
Sbjct: 300 -------------------------FLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKR 334

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +++SW++MIA    HG G++A+ LF  M  S + P+ I F+S+LYACSH GL+E+G   F
Sbjct: 335 SIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYF 394

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
             M D + + P ++HY CMVDL GRAG+LD+A + I  M V     +W  LLGAC IH N
Sbjct: 395 YKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGN 454

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIE 449
           V LAE   + L E  P N G +VLLSN+YA AG+W+DVA +R  MT +R+ K PGW+ IE
Sbjct: 455 VKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIE 514

Query: 450 VENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAG-YIPDTNFELHDVDEEVKVGNLYS 508
           V+  ++ F  G+  +  +EE Y  L  +  KL + G YIP+    LHD+++E K  ++  
Sbjct: 515 VDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSR 574

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSEKLA+AFG+    +G+ IRI+KNLRVC DCH+ +K +S +    I+VRD +RFH F+ 
Sbjct: 575 HSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKT 634

Query: 569 GACSCRDYW 577
           G+CSCRDYW
Sbjct: 635 GSCSCRDYW 643



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 156/342 (45%), Gaps = 20/342 (5%)

Query: 65  SSLLS-CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH--KALTDAHALFNGMKER 121
           SSLL+ CR++  ++QVHA +   G  T+ I+A KLL   A+    AL  A  LF      
Sbjct: 9   SSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNP 68

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           D    + ++ G ++     N   TF E  R     LDS++  F+++A    + +  G  +
Sbjct: 69  DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQL 128

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------- 233
           H   +  GLD   FV   LV MY++C  +  A+++F++M   ++V W  ++ A       
Sbjct: 129 HCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDV 188

Query: 234 -------NKF-LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                  N+    ++     ++  Y K G ++ AR++F  M  K+ +SWS MI  + ++G
Sbjct: 189 KGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNG 248

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
              +A   F  +    + PN ++    L AC+  G +E G ++     +       V   
Sbjct: 249 FFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFG-KILHGFIEKSGFLWMVSVN 307

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
             ++D   + G +  A  + E M  ++    W +++    +H
Sbjct: 308 NALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMH 349


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/491 (37%), Positives = 285/491 (58%), Gaps = 48/491 (9%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G     +V   L+ +Y    +L +A  +F  +  +D+++W+ +V  +++        E F
Sbjct: 6   GLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIF 65

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
           +   + G++  S T   V+ AC     + +GR+IH  ++ +GLD                
Sbjct: 66  QRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLD---------------- 109

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
                 R+L                         I+ TA+++MYAKCG +  ARE+FD+M
Sbjct: 110 ------REL-------------------------IVATALVNMYAKCGKLVEAREVFDQM 138

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
              +V++W+A++A    HG  +++ DL   M    + PN +TF+SL++ACSH+G ++E  
Sbjct: 139 EGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEAR 198

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
             F +M  D    P  +H+ C++DLLGR GRL+EA ++I++M  E     W  +L ACR+
Sbjct: 199 DCFIAM-ADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRL 257

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
            K+V  AE+AA+   E +P  P  Y+L+SN+YA   RW DV K+R LM RR +KK PG +
Sbjct: 258 QKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRRLMERRGVKKEPGLS 317

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
            IEV+N++H+F   + +HPQ + IY  L  L+ +++ AGY+PDT+  LH+VDEE K   L
Sbjct: 318 CIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTSLVLHNVDEETKQATL 377

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
           + HSE+LA+ +GLI TP GT + ++ NLR+C DCH+  K++S I+ R I+VRDANRFH F
Sbjct: 378 FHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTISNREIVVRDANRFHTF 437

Query: 567 EGGACSCRDYW 577
             G CSC+DYW
Sbjct: 438 ATGGCSCKDYW 448



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 11/204 (5%)

Query: 63  FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           FIS L +C +   +   R +H  +VA G    LIVA  L+ +YA    L +A  +F+ M+
Sbjct: 80  FISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQME 139

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
             D V+W+ +V G ++        +  R     G++ ++ T   ++ AC     +   R 
Sbjct: 140 GMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFACSHSGYLDEARD 199

Query: 180 IHDIVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKF 236
               +   G     + F C  ++D+  +   +++A+++ D MP    L  W  M+ A + 
Sbjct: 200 CFIAMADHGFFPLPEHFRC--VIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLSACRL 257

Query: 237 LLDVILGTAVIDMYAKCGSIDSAR 260
             DV+      +   KC  I+  R
Sbjct: 258 QKDVLRAEIAAE---KCYEIEPTR 278


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/586 (35%), Positives = 308/586 (52%), Gaps = 73/586 (12%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--- 106
           P+ + T  +     IS +  C  + +++Q+ A  +      N  V  K +     +    
Sbjct: 16  PNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKA 75

Query: 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
           ++  AH LF+ + + + V ++ M  G++++ D +     FR   RC            +R
Sbjct: 76  SMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFR---RC------------LR 120

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT----- 221
                K +  G+ +H   +K G+  + +V   L++MY  C  ID +R++FD++       
Sbjct: 121 LVSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVA 180

Query: 222 ---------------------RDL---------VTWTVMIGANKFLLDVILG-------- 243
                                R+L         VT  V++ +   L  + LG        
Sbjct: 181 YNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVK 240

Query: 244 -----------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
                      T +IDMYAKCGS+D A  +F  M +++  +WSA+I AY  HG G +A+ 
Sbjct: 241 KYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAIS 300

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
           +   M   +V P+ ITF+ +LYACSH GLVEEG   F  M +++ + P +KHY CMVDLL
Sbjct: 301 MLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLL 360

Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
           GRAGRLDEA K I+ + ++    LW  LL AC  H NV++ +   + + E    + G YV
Sbjct: 361 GRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYV 420

Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
           + SN+ A  G+W DV  +R  M  +   KIPG + IEV N +H+F  G+  H  S  ++R
Sbjct: 421 IFSNLCARYGKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHR 480

Query: 473 MLVTLSEKLELAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
            L  L ++L+ AGY+PDT+   + D+++E K   L  HSEKLAI FGL+ TP GT IR++
Sbjct: 481 ALDELVKELKSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVV 540

Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           KNLRVCGDCH+  K +S I  R II+RD  RFHHF+ G CSC DYW
Sbjct: 541 KNLRVCGDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 214/577 (37%), Positives = 294/577 (50%), Gaps = 119/577 (20%)

Query: 69  SCR-NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           SC  NI   +++H      G  + L V N L+ +Y     L++A  + + M  RD VSW+
Sbjct: 152 SCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 211

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR--------KDIV--MG 177
            +V G+++   F +  E  RE     +  D+ T+  ++ A  +         KD+   MG
Sbjct: 212 SLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMG 271

Query: 178 RL------------------IHDIVLKSGLDIDQF------------VCA---------- 197
           +                   +  + L SG++ D F             C           
Sbjct: 272 KKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKK 331

Query: 198 ------------------ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
                             AL+DMYAKC  +D AR +F+ M +RD+V+WT MI        
Sbjct: 332 IHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMI-------- 383

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
                                                  +AYG+ G+G  A+ LF  M  
Sbjct: 384 ---------------------------------------SAYGFSGRGCDAVALFSKMQD 404

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           S ++P+ I FV+ L ACSH GL+EEG   F  M D + + P ++H  CMVDLLGRAG++ 
Sbjct: 405 SGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 464

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA K I+ M +E +E +WGALLGACR+H N D+  +AA  L +  P+  G+YVLLSN+YA
Sbjct: 465 EAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYA 524

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
            AGRW++V  IR++M  + LKK PG + +EV   IH F VGD +HPQS EIYR L  L +
Sbjct: 525 KAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVK 584

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPE---GTHIRIMKNLRV 536
           K++  GY+PD+   LHDV+EE K  +L  HSEKLAI F L+ T E      IRI KNLR+
Sbjct: 585 KMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRI 644

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
           CGDCH   K +S IT R II+RD NRFH F  G CSC
Sbjct: 645 CGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 681



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 169/359 (47%), Gaps = 27/359 (7%)

Query: 50  PDCQFTRSVDPK---FFISSLLSC-RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
           P  +  +   PK   F +  +L    ++  +R VH++I++     N  +  KL+  YA  
Sbjct: 29  PKLELDQKNSPKETAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASL 88

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
           K +  A  +F+ + ER+ +  +VM+  +     +    + F     C ++ D YT P V+
Sbjct: 89  KDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVL 148

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225
           +AC    +IV+G+ IH    K GL    FV   LV MY KC  + +AR + D+M  RD+V
Sbjct: 149 KACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 208

Query: 226 TWTVMIGA----NKF--LLDVILGTAVIDMYAKCGSIDS---------------AREIFD 264
           +W  ++       +F   L+V      + +    G++ S                +++F 
Sbjct: 209 SWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFF 268

Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
           +M +K+++SW+ MI  Y  +    +A++L+  M +    P+ ++  S+L AC  T  +  
Sbjct: 269 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSL 328

Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           G ++   +     + P++     ++D+  + G LD A  + E+M   +D   W A++ A
Sbjct: 329 GKKIHGYIERKKLI-PNLLLENALIDMYAKCGCLDRARDVFENMK-SRDVVSWTAMISA 385



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 29/244 (11%)

Query: 50  PDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALT 109
           PD     SV P    +S LS       +++H  I     + NL++ N L+ +YA    L 
Sbjct: 308 PDAVSITSVLPACGDTSALSLG-----KKIHGYIERKKLIPNLLLENALIDMYAKCGCLD 362

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
            A  +F  MK RD VSW+ M+  +       +    F +    G+  DS      + AC 
Sbjct: 363 RARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS 422

Query: 170 DRKDIVMGRLIHDIVL---KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLV 225
               +  GR    ++    K    ++   C  +VD+  +   + +A +   +MP   +  
Sbjct: 423 HAGLLEEGRSCFKLMTDHYKITPRLEHLAC--MVDLLGRAGKVKEAYKFIQEMPMEPNER 480

Query: 226 TWTVMIGANKFLLDVILGTAVID------------------MYAKCGSIDSAREIFDRMR 267
            W  ++GA +   +  +G    D                  +YAK G  +    I + M+
Sbjct: 481 VWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMK 540

Query: 268 QKNV 271
            K +
Sbjct: 541 SKGL 544


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 193/520 (37%), Positives = 297/520 (57%), Gaps = 46/520 (8%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF---- 146
           NL     LL  Y     +  A  +F+ M E + V+W+ M+ G+S   D +     F    
Sbjct: 146 NLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMP 205

Query: 147 -REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
            R+ I     L +Y     +R  R+             + +   + D    A +V    +
Sbjct: 206 ERDLIAWTAMLSAYAFNGHLRYTRE-------------IFQRMPERDLISWATMVAALVE 252

Query: 206 CKVIDDARQLFDQMP---------TRDLVTWTVMIGANKFL------------------- 237
             +++++++LFD+MP         T + VT+  ++ A  FL                   
Sbjct: 253 NDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFD 312

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            D+++  A+++ Y +CG++  A+ +FD MR+++VISWS+MI+A+   G+  +A++L+  M
Sbjct: 313 TDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRM 372

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           LS   LP+ I F+S+L+ACS++G+VE     F S+  D  V P ++HY CMVD+LGRAG+
Sbjct: 373 LSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGK 432

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           L +A  L+  M       L+  +L AC+++ +V+  E AA+ + E  P+N   Y+ L+N+
Sbjct: 433 LRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANI 492

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           Y+ A R +D A+IR LM  R +KK PG +WIEV +++H+F  GD  HPQ +EIY  +  L
Sbjct: 493 YSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRL 552

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
             +++ AGY  DT   L DV+E+ K   L+ HSEKLAIAFGLI+TP G  +RI+KNLRVC
Sbjct: 553 GRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVC 612

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCH+  K +S +T R I+VRD NRFHHF+ G CSC DYW
Sbjct: 613 SDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 175/395 (44%), Gaps = 69/395 (17%)

Query: 98  LLYIYALHKALTDAHALFNGMKERDSVSWSVM---VGGFSKVADFINCFETFREFIRCGM 154
           LL  +AL     +A  LF+ M+ERD ++W++M   +  FS + D    F+   E      
Sbjct: 60  LLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPE------ 113

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
             D      ++ A  +R  +   R   D + +  L    F   +L+  Y +   +  A +
Sbjct: 114 -RDLVAWTAMLAANAERGQMENARETFDQMPERNL----FSWTSLLSAYGRSGDVKAAGR 168

Query: 215 LFDQMPTRDLVTWTVMIGANKFLLDVILG---------------TAVIDMYAKCGSIDSA 259
           +FD MP  +LV WT M+       DV+                 TA++  YA  G +   
Sbjct: 169 VFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYT 228

Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM-----LSSRVLPNRITFVSLLY 314
           REIF RM ++++ISW+ M+AA   +   +++ +LF  M     LS  + PNR+TF++LL 
Sbjct: 229 REIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLD 288

Query: 315 ACSHTGLVEEGLRLFSSMWD------------------------------DFAVRPDVKH 344
           ACS  G + EG ++ +++ +                              D   R DV  
Sbjct: 289 ACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVIS 348

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           ++ M+    + GR+DEA++L   M  E    D+ ++ ++L AC     V+ +    +S++
Sbjct: 349 WSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIV 408

Query: 402 ERQPQNPG--HYVLLSNVYANAGRWQDVAKIRDLM 434
                 P   HY  + +V   AG+ +D   +  LM
Sbjct: 409 GDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLM 443



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 38/297 (12%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +F+ + +RDS SW +M+  +++  D  N    F    R    L S+T      A   
Sbjct: 11  ARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPR--WSLGSWTALLSAFALSG 68

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
             +    + + D + +     D      ++ + A    I+DA+  FDQMP RDLV WT M
Sbjct: 69  HHE--EAKTLFDTMQER----DLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAM 122

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
           + AN                A+ G +++ARE FD+M ++N+ SW+++++AYG  G  K A
Sbjct: 123 LAAN----------------AERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAA 166

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
             +F  M       N + + ++L   S +G V    R F SM        D+  +T M+ 
Sbjct: 167 GRVFDSMPEW----NLVAWTAMLTGYSLSGDVVRAKRAFDSM-----PERDLIAWTAMLS 217

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
                G L    ++ + M  E+D   W  ++ A  + +N DL E  +K L +R P++
Sbjct: 218 AYAFNGHLRYTREIFQRMP-ERDLISWATMVAA--LVEN-DLLE-ESKELFDRMPRH 269



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 11/212 (5%)

Query: 47  QMGPDCQFTRSVDPK--FFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101
           +M   C  ++ + P    FI+ L +C     + + R++HA +   G  T+L+V+N L+  
Sbjct: 265 RMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNF 324

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           Y    AL DA  +F+GM+ RD +SWS M+  F++        E +   +  G   D    
Sbjct: 325 YGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIF 384

Query: 162 PFVIRACRDRKDI-VMGRLIHDIVLKSGLD--IDQFVCAALVDMYAKCKVIDDARQLFDQ 218
             V+ AC +   +   G     IV  + ++  ++ + C  +VD+  +   + DA  L   
Sbjct: 385 ISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYAC--MVDVLGRAGKLRDAEDLLRL 442

Query: 219 MPTR-DLVTWTVMIGANKFLLDVILGTAVIDM 249
           MP     + +  M+ A K   DV  G A  ++
Sbjct: 443 MPFHPGPLLYMTMLSACKLYTDVERGEAAAEV 474



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/229 (22%), Positives = 101/229 (44%), Gaps = 49/229 (21%)

Query: 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
           M+ +   ++ ARQ+FD +  RD  +W +M+                 +YA+ G + +A+ 
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLS----------------IYARSGDLSNAKG 44

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV------------------- 302
           +FDRM + ++ SW+A+++A+   G  ++A  LF  M    +                   
Sbjct: 45  VFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDA 104

Query: 303 ------LPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
                 +P R  + + ++L A +  G +E     F  M        ++  +T ++   GR
Sbjct: 105 KYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQM-----PERNLFSWTSLLSAYGR 159

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           +G +  A ++ +SM  E +   W A+L    +  +V  A+ A  S+ ER
Sbjct: 160 SGDVKAAGRVFDSMP-EWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPER 207



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 17/188 (9%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
           M+ + G ++ AR+IFD +  ++  SW  M++ Y   G    A  +F  M    +     +
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSL----GS 56

Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
           + +LL A + +G  EE   LF +M +      D+  +T M+ +L     +++A    + M
Sbjct: 57  WTALLSAFALSGHHEEAKTLFDTMQER-----DLIAWTIMLTVLATFSNIEDAKYHFDQM 111

Query: 369 SVEKDEGLWGALLGACRIHKNVDLAEMA-AKSLLERQPQ-NPGHYVLLSNVYANAGRWQD 426
             E+D   W A+L A     N +  +M  A+   ++ P+ N   +  L + Y  +G  + 
Sbjct: 112 P-ERDLVAWTAMLAA-----NAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKA 165

Query: 427 VAKIRDLM 434
             ++ D M
Sbjct: 166 AGRVFDSM 173


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 197/506 (38%), Positives = 290/506 (57%), Gaps = 51/506 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           ++R+VHA  +  G   +  VA  L+  YA    +  A ++F  M ER+ VSWS M+G ++
Sbjct: 197 RVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYA 256

Query: 135 KVADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           K     +  E F++ +     L  +S T+  V+ AC     +  G+L+H  +L+ G    
Sbjct: 257 KNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRG---- 312

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
                                  FD +                    V +  A++ MY +
Sbjct: 313 -----------------------FDSL--------------------VSVLNALMAMYMR 329

Query: 253 CGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           CG ++  R IF  +  +++V+SW+++I+ YG HG G +A+ +F  M+     P+ ITF+S
Sbjct: 330 CGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFIS 389

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +L ACSH GLV EG  LF SM + + V P  +HY CMVDLLGRAG+LDEA++LI SM +E
Sbjct: 390 VLGACSHAGLVNEGKMLFESMVE-YGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIE 448

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
               +WGALLGACRIH +V+ AE+A   L + +P+N G+YVLL+++YA A     V  ++
Sbjct: 449 PSPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLK 508

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
           +L+    L+K+ G +WIEV+ K+H F+  D+ +P  E++  ++     +++  GY+PDT 
Sbjct: 509 ELLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTG 568

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
             L+D++ E K   L  HSEKLA+AFGLI T  G  IRI KNLR+C DCHS  K +S  T
Sbjct: 569 IVLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFT 628

Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
            R I+VRD NRFHHF  G CSC DYW
Sbjct: 629 EREIVVRDVNRFHHFRDGVCSCGDYW 654



 Score = 39.3 bits (90), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
           F  D  L T +I+ YA  G++ +AR++FD    KN+  W+A++ A      G +AL    
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLA 163

Query: 296 MMLSSRVLPNRITFVSLLYAC-----SHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMV 349
            M    V  +  ++   L AC     SH         + + ++   +A+   V   T ++
Sbjct: 164 DMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVA--TTLI 221

Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           D   + G +  A  +  +M  E++   W A++G
Sbjct: 222 DCYAKLGIVRYAESVFAAMP-ERNVVSWSAMIG 253


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 204/556 (36%), Positives = 300/556 (53%), Gaps = 55/556 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H  I+      N+ V N L+ +YA   +L D+ +LF  M  +D VSW+ M+  ++  
Sbjct: 190 KHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLY 249

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
               + F  F      G   D YT   ++ AC   K +  GR++H  +   G D D  + 
Sbjct: 250 GHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQ 309

Query: 197 AALVDMYAKCKVIDDARQLF---------------------------------------- 216
             L+ M+ +C  ++ AR+ F                                        
Sbjct: 310 NNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFT 369

Query: 217 -DQMPTRDLVTWTVMIGANK-------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
            D+     +V     +GA +             F  DVILGTA+++MYAKCGS+  A++ 
Sbjct: 370 PDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKS 429

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD +  K+V+SWSAMIAA   HG  ++AL+L  +M    +  N +T  S+L+ACSH G +
Sbjct: 430 FDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRL 489

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
            EG+  F  +  DF +  D ++    +DLLGRAG L EA  ++ +M  +        LLG
Sbjct: 490 YEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLG 549

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            C++H +V   +   K ++  +P+NPG YVLL+N+YA AGRW DVAK+R  M ++ +K+ 
Sbjct: 550 GCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQ 609

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVDEEV 501
            G + IE  +KI++FSVGD+++P++ EI   L  L  ++ E  GY+PDT    HDV ++ 
Sbjct: 610 TGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDK 669

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L  HSEK+A+ FGLI +P G+ +RI+KNLRVC DCH+  K  S IT R IIVRD  
Sbjct: 670 KEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGT 729

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHFEGG CSC DYW
Sbjct: 730 RFHHFEGGICSCGDYW 745



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 172/354 (48%), Gaps = 69/354 (19%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +  +AN ++ +Y   K+  DA  +F+ +K+R++ SWS++V  + + A +    E ++E +
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R  + +D+YTL  V+ AC    D+  GR++     + G + D  V  +L+ ++AKC  ++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 211 DARQLFDQM-PTRDLVTWTVMIGA------NKFLLDV------------------ILG-- 243
           +A  +F  M   RD+++ T MIGA      N   LD                   ILG  
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 244 ----------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
                                        A+I MYAKCGS+  ++ +F  M  K+V+SW+
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG----LRLFSS 331
           AMIAAY  +G  K A  LF  M +    P+  TF S+L AC+    +E+G    +R+ + 
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 332 MWD-DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE-GLWGALLGA 383
            +D DFA++ +      ++ +  R G L+ A +     S+EK E G W  +L A
Sbjct: 301 GFDRDFAMQNN------LISMFTRCGSLESARRYF--YSIEKKELGAWNTMLAA 346



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 1/155 (0%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D  L   +I MY KC S + AR++FDR++Q+N  SWS ++  Y  +   ++AL+++  M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              +  +  T  S+L AC+    VEEG R+     ++     DV   T ++ L  + G L
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEG-RMVQRKAEELGFEKDVVVATSLIHLFAKCGCL 119

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
           +EA  +  SM   +D     A++GA   H   DLA
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLA 154


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 202/503 (40%), Positives = 279/503 (55%), Gaps = 37/503 (7%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +H  +V  G   N  V N L+ +YA    +  A  +F  +  RD VSW+ ++ G      
Sbjct: 409 MHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGH 468

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
               F+   E     MQL S +               M   I  + L  G       CAA
Sbjct: 469 AAEAFQLVTE-----MQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPG-------CAA 516

Query: 199 LVDMYAKCKVIDDARQLFDQMPTR--DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
           L                    P R  ++  + V    +    D+ +G+A++DMYAKCG +
Sbjct: 517 LA------------------APARGKEIHGYAVR---HALESDIAVGSALVDMYAKCGCL 555

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYA 315
            ++R +FDR+ ++NVI+W+ +I AYG HG G +A+ LF  M       PN +TF++ L A
Sbjct: 556 AASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAA 615

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-EKDE 374
           CSH+GLV+ GL LF  M  D  V+P    + C+VD+LGRAGRLDEA  +I SM   E+  
Sbjct: 616 CSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQV 675

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
             W +LLGACR+H+NV+L E+AA+ L E +P    HYVLL N+Y+ AG W     +R  M
Sbjct: 676 SAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRM 735

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
            R+ + K PG +WIE++  IH+F  G+S+HP S E++  +  L E++   GY PDT+  L
Sbjct: 736 RRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVL 795

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           HDVDE+ K   L  HSEKLAIAFGL+  P G  IR+ KNLRVC DCH   K +S +  R 
Sbjct: 796 HDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRD 855

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           I++RD  RFHHF  G+CSC DYW
Sbjct: 856 IVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 25/183 (13%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKER------DSVSWSVMVGGFSKVADFINCFETFREF 149
           N LL +YA    + DA +LF            D V+W+ M+    +        E   + 
Sbjct: 214 NALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDM 273

Query: 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKV 208
           +  G++ D  T    + AC   + + +GR +H +VLK   L  + FV +ALVDMYA  + 
Sbjct: 274 VSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEK 333

Query: 209 IDDARQLFDQM--PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
           +  AR++FD +  P+R L  W  MI                  YA+ G  + A E+F RM
Sbjct: 334 VASARRVFDMVPEPSRQLGMWNAMICG----------------YAQAGMDEEALELFSRM 377

Query: 267 RQK 269
             +
Sbjct: 378 EAE 380



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 134/344 (38%), Gaps = 79/344 (22%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ-LDSYTLPFVIRACR---DRKDIVM 176
           RD+VS++ ++        +    +  R+ +  G   + S+TL  V+ AC          +
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 177 GRLIHDIVLKSGL---DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------DLVTW 227
           GR  H   LK G      ++F   AL+ MYA+  ++DDA+ LF            D+VTW
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 228 TVMIG----------ANKFLLDVI------------------------------------ 241
             MI           A + L D++                                    
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 242 ---------LGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKA 290
                    + +A++DMYA    + SAR +FD + +  + +  W+AMI  Y   G  ++A
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 291 LDLFPMM-LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH---YT 346
           L+LF  M   +   P+  T   +L AC+ +    EG     +M      R    +     
Sbjct: 371 LELFSRMEAEAGCAPSETTMSGVLPACARS----EGFAGKEAMHGYVVKRGMAGNRFVQN 426

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            ++D+  R G +D A ++  +M   +D   W  L+  C +  + 
Sbjct: 427 ALMDMYARLGEMDVARRIF-AMIDPRDVVSWNTLITGCVVQGHA 469



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 89/217 (41%), Gaps = 22/217 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H   V     +++ V + L+ +YA    L  + A+F+ +  R+ ++W+V++  +   
Sbjct: 524 KEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMH 583

Query: 137 ADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQF 194
                    F E    G    +  T    + AC     +  G  L H +    G+     
Sbjct: 584 GLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPD 643

Query: 195 VCAALVDMYAKCKVIDDARQLFDQM-PTRDLVT-WTVMIGANKFLLDVILGTA------- 245
           + A +VD+  +   +D+A  +   M P    V+ W+ ++GA +   +V LG         
Sbjct: 644 LHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFE 703

Query: 246 -----------VIDMYAKCGSIDSAREIFDRMRQKNV 271
                      + ++Y+  G  D +  +  RMR++ V
Sbjct: 704 LEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGV 740


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/496 (40%), Positives = 277/496 (55%), Gaps = 49/496 (9%)

Query: 84  VAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
           +A G L  +N I+ N LL +Y    +L +A  +F+ M   D+ SW+ M+   ++  + + 
Sbjct: 1   MASGELKSSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLE 60

Query: 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201
             E F      G+   S TL  V+ AC     + +G+ IH     S LD           
Sbjct: 61  ALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIH-----SRLD----------- 104

Query: 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261
                                          A+ F   V+  TA++DMYAKCGS++ + +
Sbjct: 105 -------------------------------ASGFHSSVLAQTALLDMYAKCGSLECSSK 133

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  M  +N +SW+AMIAA   HGQG +AL+LF  M    ++ +  TF+ +L ACSH GL
Sbjct: 134 VFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGL 193

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++E L  F SM +D+A+ P   HY   +D +GRAGRL +A +LI SM    +   W  LL
Sbjct: 194 IKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLL 253

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACRIH   + A   A+ L +  P++   Y LL NVYA   R+ D  ++R  MT R LKK
Sbjct: 254 NACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRKSMTDRGLKK 313

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
           +PG ++IEV+NK+H+F  GD  HP  +EI   L  L  ++  AGY+P+T   LH V+EE 
Sbjct: 314 VPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLHAVNEEE 373

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   +  HSEKLAIAFGLIATP GT + I+KNLRVC DCH+  K ++ I RR I+VRD +
Sbjct: 374 KEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRIVVRDTH 433

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHFE G CSC+DYW
Sbjct: 434 RFHHFEDGQCSCKDYW 449



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 5/194 (2%)

Query: 69  SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
           +C    ++ +Q+H+++ A G  ++++    LL +YA   +L  +  +F  M+ R+SVSW+
Sbjct: 88  ACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWT 147

Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLK 186
            M+   ++        E F+E    GM  D+ T   V+RAC     I       H +V  
Sbjct: 148 AMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVED 207

Query: 187 SGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGT 244
             +   +   C AL D   +   + DA +L   MP   + VTW  ++ A +        T
Sbjct: 208 YAIAPTETHYCRAL-DTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERAT 266

Query: 245 AVIDMYAKCGSIDS 258
            V ++ AK    DS
Sbjct: 267 KVAELLAKLAPEDS 280


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 310/567 (54%), Gaps = 61/567 (10%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA-LHKA--LTDAHALFNGMKERDSVSWSV 128
           ++ Q  Q+HAQI+              L+ +A L  A  LT AH + N +  ++S   + 
Sbjct: 5   SLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNT 64

Query: 129 MVGGFSKVADFINCFETFREFI--RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
           M+  +S+  D       F   +      + D +T PF++++C   K   +G+ +H ++ K
Sbjct: 65  MIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYK 124

Query: 187 SGLDIDQFVCAALVDMYAKCK--------------------------VIDDAR-----QL 215
           SGL+ D++V   L+ MY+ C                            +DD R     +L
Sbjct: 125 SGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRL 184

Query: 216 FDQM------PTRDLVTWTV-----------------MIGANKFLLDVILGTAVIDMYAK 252
           F++M      P    V   +                 +I   K  L+  + TA+IDMYAK
Sbjct: 185 FEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAK 244

Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
           CGSI SAR++FD +  K+V +W+AMI+    HG  ++A+ LF  M S  + P+  T  ++
Sbjct: 245 CGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAV 304

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L AC + G   EG   F+SMW  + ++P ++HY CMVDLL R G LDEA + I  M +E 
Sbjct: 305 LSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEP 364

Query: 373 DEGLWGALLGACRIHKNVDLAE--MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           D  LW  L+ A ++H ++D +E  M  + LL+    + G YVLL NVYA+AG+W D AK+
Sbjct: 365 DVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKM 424

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R+LM ++ L K PG + IEV+  +H+F+ GDS H ++E+IY  L  + E+L+  GY P  
Sbjct: 425 RELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKL 484

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +  L ++D + K   L  HSEKLA+AFGLI T  GT IRI+KNLR C DCHS +K +S I
Sbjct: 485 SEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSPGTEIRIVKNLRSCEDCHSVLKLISKI 544

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
            ++ IIVRD  RFHHF  G CSC+DYW
Sbjct: 545 YQQDIIVRDRIRFHHFINGDCSCKDYW 571


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/505 (38%), Positives = 288/505 (57%), Gaps = 54/505 (10%)

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIV 184
           W+ M+ G+S+  +       +   I  G+   +++T PF++ +C     +  G  +H  +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------- 230
           +K G + D FV  AL+ +Y+    ++ AR LFD+   RDLV++  M              
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 231 -----------------------IGA--------------NKFLLDVILGTAVIDMYAKC 253
                                  +GA                F  + IL  AV+DMYAKC
Sbjct: 122 CLFGEMQNSDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKC 181

Query: 254 GSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           GSIDSA EIF R+ +  K    +++MIA    HG G+ A+ +F  ++S+ + P+ +TFV 
Sbjct: 182 GSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVG 241

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +L AC H+GL+EEG +LF SM++ + ++P ++HY CMVDLLGR G L+EA  L++ M  E
Sbjct: 242 VLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE 301

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
            +  +W ALL ACR H NV + E+A + LLE + Q+   YVLLSN+ A+A +W++  ++R
Sbjct: 302 ANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVR 361

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
            +M    ++K PGW++IE+   IH+F   D +HPQ +EI  ML  ++ +L+ AGY+P+T 
Sbjct: 362 KVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTA 421

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
             + D+DEE K   +  HSEKLA+AFGL+       IRI+KNLR+C DCH   K VS I 
Sbjct: 422 QVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIY 481

Query: 552 RRVIIVRDANRFHHFEGGACSCRDY 576
            R I VRD  RFHHF  G+CSC D+
Sbjct: 482 GREITVRDTMRFHHFRNGSCSCMDF 506


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 216/591 (36%), Positives = 308/591 (52%), Gaps = 91/591 (15%)

Query: 77  RQVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           R+VHA ++  G   N + + N L+ +YA   A+ DA ++F  M E+DSVSW+ ++ G  +
Sbjct: 324 REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 383

Query: 136 --------------------------------VADFINCFETFREFIRCGMQLDSYTLPF 163
                                            A      + F + +R G  L   T   
Sbjct: 384 NECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFIN 443

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TR 222
           ++ A        +   IH +VLK  L  D  +  AL+  Y KC  +++  ++F +M  TR
Sbjct: 444 ILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETR 503

Query: 223 DLVTWTVMIGA------------------------NKFLLDVIL---------------- 242
           D V+W  MI                          + F    IL                
Sbjct: 504 DEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVH 563

Query: 243 --------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                         G+A++DMY+KCG ID A   F+ M  +NV SW++MI+ Y  HG G+
Sbjct: 564 ACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGE 623

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           KAL LF  M+     P+ +TFV +L ACSH G VEEG   F SM + + + P V+H++CM
Sbjct: 624 KALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCM 683

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA-CRIH-KNVDLAEMAAKSLLERQPQ 406
           VDLLGRAG+LDE    I SM ++ +  +W  +LGA CR + +N +L   AA+ LLE +PQ
Sbjct: 684 VDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQ 743

Query: 407 NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQ 466
           N  +YVLL+N+YA+  +W+DVAK R  M    +KK  G +W+ +++ +H F  GD  HP+
Sbjct: 744 NAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPE 803

Query: 467 SEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT 526
            + IY  L  L+ K+  AGYIP T + L D++ E K   L  HSEK+A+AF ++      
Sbjct: 804 KDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAF-VLTRQSAL 862

Query: 527 HIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            IRIMKNLRVCGDCHS   ++S I  R I++RD+NRFHHFE G CSC DYW
Sbjct: 863 PIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 159/327 (48%), Gaps = 34/327 (10%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIY-ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           Q+H  I      ++++V N L+ +Y +   +  DA ++F+G+  R+S+SW+ ++  +S+ 
Sbjct: 223 QIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRR 282

Query: 137 ADFINCFETFREFIRCGMQL-----DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            D ++ ++ F    + G+       D+++   V+   R +     GR +H  V+++GL+ 
Sbjct: 283 GDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRK-----GREVHAHVIRTGLND 337

Query: 192 DQF-VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250
           ++  +   LV+MYAK   I DA  +F+ M  +D V+W  +I      LD           
Sbjct: 338 NKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG----LD----------Q 383

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYG-YHGQGKKALDLFPMMLSSRVLPNRITF 309
            +C   + A E+F  M + + +SW+++I A         +A+  F  M+      +R+TF
Sbjct: 384 NECS--EDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTF 441

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           +++L A S   L E   ++ + +   + +  D      ++   G+ G ++E  K+   MS
Sbjct: 442 INILSAVSSLSLHEVSHQIHALVLK-YCLSDDTAIGNALLSCYGKCGEMNECEKIFARMS 500

Query: 370 VEKDEGLWGALLGAC----RIHKNVDL 392
             +DE  W +++        +HK +DL
Sbjct: 501 ETRDEVSWNSMISGYIHNELLHKAMDL 527



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 52/325 (16%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           + R++H Q +  G + NL ++N L+ IY     L  A  LF+ M  R+ V+W+ ++ G++
Sbjct: 117 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR--KDIVMGRLIHDIVLKSGLDID 192
           +          FR+ +R G   + Y     +RAC++       +G  IH ++ K+    D
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 193 QFVCAALVDMYAKC-KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
             VC  L+ MY  C    +DAR +FD +  R+ ++W                 ++I +Y+
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISW----------------NSIISVYS 280

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           + G   SA ++F  M+++ +          G+  +   A   F ++   R     +    
Sbjct: 281 RRGDAVSAYDLFSSMQKEGL----------GFSFKPNDAFSEFSVLEEGRRKGREV---- 326

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
                 H  ++  GL               V     +V++  ++G + +A  + E M VE
Sbjct: 327 ------HAHVIRTGLN-----------DNKVAIGNGLVNMYAKSGAIADACSVFELM-VE 368

Query: 372 KDEGLWGALLGACRIHK-NVDLAEM 395
           KD   W +L+     ++ + D AEM
Sbjct: 369 KDSVSWNSLISGLDQNECSEDAAEM 393


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 322/606 (53%), Gaps = 96/606 (15%)

Query: 64  ISSLLS-CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           +SSL+  C++I QI+Q HA ++    +T  ++ANK L   AL  +LT AH LF+ + + D
Sbjct: 182 LSSLIDLCKSINQIKQTHANLITTAQITLPVIANKFLKNVAL-ASLTYAHKLFDQIPQPD 240

Query: 123 SVSWSVMVGGFSKVA-DFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
              ++ M+   S     +++    FR  IR  G   + Y+  F   AC +   +  G  +
Sbjct: 241 LFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQV 300

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR--------------------------- 213
               +K GLD + FV  AL+ M+ K   ++DAR                           
Sbjct: 301 FTHAVKVGLDGNVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNM 360

Query: 214 ----QLFDQMPTRDLVTWT------VMIGANKFLLDVI---------------------- 241
               +LFD+M  RD+V+W+      V +G     LD                        
Sbjct: 361 VLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAAC 420

Query: 242 --------------------------LGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISW 274
                                     L  ++IDMYAKCG IDSA  +F   + ++ V  W
Sbjct: 421 SNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPW 480

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  +  HG+ ++A+++F  M   +V PN++TF++LL ACSH  +V+EG   F  M  
Sbjct: 481 NAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMAS 540

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
           D+ + P+++HY CMVDLL R+G L ++ ++I SM +  D  +WGALL ACRI+K+++   
Sbjct: 541 DYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGY 600

Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR---DLMTRRRLKKIPGWTWIEVE 451
              + + E  P + G  VLL N+Y+ +GRW +   +R   ++ + R  KKIPG++ IE+ 
Sbjct: 601 RIGRIIKEIDPNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDR--KKIPGFSSIELN 658

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV-DEEVKVGNLYSHS 510
              H+F VGD +HPQS EIY  L  +  KL++AGY+P+    L D  DEE K   L  HS
Sbjct: 659 GVFHEFLVGDRSHPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHS 718

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           EKLAIAFGL+ T  GT IRI+KNLRVCGDCH   K +S +  RVIIVRD  R+HHF+ G 
Sbjct: 719 EKLAIAFGLMNTAPGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGI 778

Query: 571 CSCRDY 576
           CSC+DY
Sbjct: 779 CSCKDY 784


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/518 (38%), Positives = 312/518 (60%), Gaps = 18/518 (3%)

Query: 64  ISSLL-SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
           +SS+L +C +  ++ R+VH  I+      N+ V++ L+ +YA    L  A  +F+ M  R
Sbjct: 181 VSSILPACADYIKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHR 240

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC--RDRKDIVMGRL 179
           D VSW+VM+  +    ++      F +  + G++L+  +    I  C    + ++ +G L
Sbjct: 241 DIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGIL 300

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
               +  SG+  ++     +V     C  ++  R    ++       W        F+ D
Sbjct: 301 CK--MQDSGIKPNRI---TIVSALPGCTNLESLRG-GKEIHGYVFRHW--------FIED 346

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V + TA++ +YAKCG ++ +R +F+ M +K+V++W+ MI A   HG+G ++L LF  ML 
Sbjct: 347 VTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLD 406

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           S V PN +TF+ +L  CSH+ L +EGL +F+SM  + ++ PD  HY+CMVD+L RAGRL+
Sbjct: 407 SGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLE 466

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA   I  M +E     WGALLGACR++KNV+L  +AA  L E +P N G+YVLLSN+  
Sbjct: 467 EAYDFIRKMPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILV 526

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
            A +W + ++IR +M  + L K PG +W++V+NK++ F  GD ++ Q + IYR L  + E
Sbjct: 527 TAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDE 586

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           K+ L GY P+T+F L +VD+E +   L SHSE+LA+AFG++ +   T +R+ KNLR+CGD
Sbjct: 587 KMRLDGYQPNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGD 646

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CH+ IK ++ I    IIVRD+ RFHHF  G C+C D+W
Sbjct: 647 CHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 162/343 (47%), Gaps = 29/343 (8%)

Query: 54  FTRSVDPKFFI-----SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
            +R+V P  F+      +  +  ++   +++H   +  G   +L++ N L+ ++   K +
Sbjct: 69  LSRNVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFV 128

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
             A  +F+ M  +D VSW+ M   +            FRE    G++ +S T+  ++ AC
Sbjct: 129 NGARCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC 188

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
            D   I +GR +H  +L++ ++ + +V +ALV+MYA    +  AR +FD M  RD+V+W 
Sbjct: 189 ADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWN 246

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYH 284
           VM+ A                Y      +    +F +MR++    N  SW+A I+    +
Sbjct: 247 VMLTA----------------YFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQN 290

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           GQ + AL +   M  S + PNRIT VS L  C++   +  G  +   ++  + +  DV  
Sbjct: 291 GQHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIE-DVTI 349

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            T +V L  + G L+ +  +  +M   KD   W  ++ A  +H
Sbjct: 350 TTALVLLYAKCGDLELSRHVFNTMP-RKDVVAWNTMIMANSMH 391



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 57/287 (19%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L  A  LF+ + E D  +W++++ G ++        + +   +   ++ D + L  V +A
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKA 86

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C    D+V+ + IHD       D  QF                                 
Sbjct: 87  CAASGDLVVAKKIHD-------DAIQF--------------------------------- 106

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
               G NK   D++LG A+IDM+ KC  ++ AR +FD M  K+V+SW++M   Y   G  
Sbjct: 107 ----GFNK---DLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNCGMC 159

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACS---HTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           ++ + LF  M  + +  N +T  S+L AC+     G    G  L + M  +  V      
Sbjct: 160 RQGILLFREMGLNGIRANSLTVSSILPACADYIKLGREVHGFILRNEMEGNVYVS----- 214

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
            + +V++   +  L +A  + +SM   +D   W  +L A  ++K  +
Sbjct: 215 -SALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLNKEYE 259



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 14/141 (9%)

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G +  A  +FD++ + ++ +W+ +I+ +  HG  KKA+D++  +LS  V P++   +S+ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 314 YACSHTGLVEEGLRLFSSMWDD---FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            AC+ +G     L +   + DD   F    D+     ++D+ G+   ++ A  + + M V
Sbjct: 85  KACAASG----DLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVV 140

Query: 371 EKDEGLWGALL------GACR 385
            KD   W ++       G CR
Sbjct: 141 -KDVVSWTSMTYCYVNCGMCR 160


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/552 (36%), Positives = 294/552 (53%), Gaps = 85/552 (15%)

Query: 64  ISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           +S L +C ++  ++    +H   V  G + ++ V N LL +YA    + +A  +F+ +  
Sbjct: 448 LSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPH 507

Query: 121 R-----------------------------------DSVSWSVMVGGFSKVADFINCFET 145
           R                                   D ++WSV++GG  K +      E 
Sbjct: 508 REVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEI 567

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           FR+    G + D  T+  ++RAC   + + MG+ IH  V +   D               
Sbjct: 568 FRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKD--------------- 612

Query: 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDR 265
                                W           D+    A++DMYAKCG +  +R +FD 
Sbjct: 613 ---------------------W-----------DLARTNALVDMYAKCGGLSLSRNVFDM 640

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325
           M  K+V SW+ MI A G HG GK+AL LF  ML S V P+  TF  +L ACSH+ LVEEG
Sbjct: 641 MPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEG 700

Query: 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
           +++F+SM  D  V P+ +HYTC+VD+  RAG L+EA   I+ M +E     W A L  CR
Sbjct: 701 VQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCR 760

Query: 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGW 445
           ++KNV+LA+++AK L E  P    +YV L N+   A  W + +KIR LM  R + K PG 
Sbjct: 761 VYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGC 820

Query: 446 TWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN 505
           +W  V N++H F  GD ++ +S++IY  L  L  K++ AGY PDT++ LHD+D+E K  +
Sbjct: 821 SWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAES 880

Query: 506 LYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHH 565
           L +HSEKLA+AFG++     + IR+ KNLR+CGDCH+ IK++S +    I+VRD+ RFHH
Sbjct: 881 LCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHH 940

Query: 566 FEGGACSCRDYW 577
           F+ G CSC+D+W
Sbjct: 941 FKNGNCSCKDFW 952



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 153/327 (46%), Gaps = 71/327 (21%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++H  +V  G + ++ V++  +  YA    + +A  +F+ M  RD V+W+      S  
Sbjct: 161 KEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWN------SLS 214

Query: 137 ADFINC------FETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
           + ++NC         FRE +  G++ D  T+  ++ AC D +D+  G+ IH   LK G+ 
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV 274

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKF--- 236
            + FV  ALV++Y  C  + +A+ +FD MP R+++TW  +            G N F   
Sbjct: 275 ENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM 334

Query: 237 ----------------------------------------LLDVILGTAVIDMYAKCGSI 256
                                                   + DV + TA++++YA C  +
Sbjct: 335 GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCV 394

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             A+ +FD M  +NV++W+++ + Y   G  +K L++F  M+ + V P+ +T +S+L+AC
Sbjct: 395 REAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC 454

Query: 317 S-----HTGLVEEGLRLFSSMWDDFAV 338
           S      +G V  G  +   M +D  V
Sbjct: 455 SDLQDLKSGKVIHGFAVRHGMVEDVFV 481



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 161/369 (43%), Gaps = 74/369 (20%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           DP      L +C ++  ++    +H   +  G + N+ V+N L+ +Y     + +A A+F
Sbjct: 241 DPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVF 300

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINC------FETFREFIRCGMQLDSYTLPFVIRACR 169
           + M  R+ ++W+      S  + ++NC         FRE    G++ D   +  ++ AC 
Sbjct: 301 DLMPHRNVITWN------SLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACS 354

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
             KD+  G+ IH   +K G+  D FVC ALV++YA C  + +A+ +FD MP R++VTW  
Sbjct: 355 QLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNS 414

Query: 230 MI-----------GANKFLLDVILG----------------------------------- 243
           +            G N F   V+ G                                   
Sbjct: 415 LSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHG 474

Query: 244 --------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
                    A++ +YAKC  +  A+ +FD +  + V SW+ ++ AY  + + +K L +F 
Sbjct: 475 MVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFS 534

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
            M    V  + IT+  ++  C     +EE + +F  M      +PD    T +  +L RA
Sbjct: 535 QMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM-QTMGFKPD---ETTIYSIL-RA 589

Query: 356 GRLDEALKL 364
             L E L++
Sbjct: 590 CSLSECLRM 598



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 182/398 (45%), Gaps = 44/398 (11%)

Query: 59  DPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           DP    S L +C  +  ++    +H   V  G + ++ V   L+ +YA    + +A  +F
Sbjct: 342 DPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVF 401

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINC------FETFREFIRCGMQLDSYTLPFVIRACR 169
           + M  R+ V+W+      S  + ++NC         FRE +  G++ D  T+  ++ AC 
Sbjct: 402 DLMPHRNVVTWN------SLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACS 455

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
           D +D+  G++IH   ++ G+  D FVC AL+ +YAKC  + +A+ +FD +P R++ +W  
Sbjct: 456 DLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASW-- 513

Query: 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV----ISWSAMIAAYGYHG 285
                           ++  Y      +    +F +M +  V    I+WS +I     + 
Sbjct: 514 --------------NGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNS 559

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM---WDDFAVRPDV 342
           + ++A+++F  M +    P+  T  S+L ACS +  +  G  +   +   W D+    D+
Sbjct: 560 RIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDW----DL 615

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-EMAAKSLL 401
                +VD+  + G L  +  + + M + KD   W  ++ A  +H N   A  +  K LL
Sbjct: 616 ARTNALVDMYAKCGGLSLSRNVFDMMPI-KDVFSWNTMIFANGMHGNGKEALSLFEKMLL 674

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
                +   +  + +  +++   ++  +I + M+R  L
Sbjct: 675 SMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHL 712



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 171/389 (43%), Gaps = 79/389 (20%)

Query: 59  DPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D   F++   +C   R+  +++Q H      G ++++ + N  ++ Y   K +  A  +F
Sbjct: 39  DKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVF 98

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINC------FETFREFIRCGMQLDSYTLPFVIRACR 169
           + +  RD V+W+      S  A ++NC         FR+     ++ +  T+  ++  C 
Sbjct: 99  DDLVARDVVTWN------SLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCS 152

Query: 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229
           D +D+  G+ IH  V++ G+  D FV +A V+ YAKC  + +A+ +FD MP RD+VTW  
Sbjct: 153 DLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNS 212

Query: 230 MI-----------GANKF---LLD------------------------------------ 239
           +            G N F   +LD                                    
Sbjct: 213 LSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHG 272

Query: 240 ----VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
               V +  A++++Y  C  +  A+ +FD M  +NVI+W+++ + Y   G  +K L++F 
Sbjct: 273 MVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFR 332

Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVDL 351
            M  + V P+ +   S+L ACS    ++ G  +       FAV+     DV   T +V+L
Sbjct: 333 EMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHG-----FAVKHGMVEDVFVCTALVNL 387

Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGAL 380
                 + EA  + + M   ++   W +L
Sbjct: 388 YANCLCVREAQTVFDLMP-HRNVVTWNSL 415



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 54/219 (24%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G++ D      V +AC   +D +  +  HD   + G+  D  +  A +  Y KCK ++ A
Sbjct: 35  GIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGA 94

Query: 213 RQLFDQMPTRDLVTWTVM-------------------IGANK------------------ 235
           R++FD +  RD+VTW  +                   +G NK                  
Sbjct: 95  RRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDL 154

Query: 236 -----------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
                             + DV + +A ++ YAKC  +  A+ +FD M  ++V++W+++ 
Sbjct: 155 QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLS 214

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           + Y   G  +K L++F  M+   V P+ +T   +L ACS
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 199/614 (32%), Positives = 309/614 (50%), Gaps = 113/614 (18%)

Query: 77   RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            +Q+H  +   G  +++ + N L+ +Y+ +  L  A  +F+ M+ R++ SW+ M+  ++ +
Sbjct: 795  KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 854

Query: 137  ADFINCFETFREFIRCGMQLD-----------------------------------SYTL 161
                + +  F E     M+ D                                   S ++
Sbjct: 855  GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSM 914

Query: 162  PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
              V++A  +   + MG+  H  VL++G D D +V  +L+DMY K   +  A+ +FD M  
Sbjct: 915  TSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKN 974

Query: 222  R-----------------------------------DLVTWTVMIGA------------- 233
            R                                   DLVTW  MI               
Sbjct: 975  RNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMP 1034

Query: 234  ------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
                                          N F+ DV + TA+IDMY+K  S+ +A ++F
Sbjct: 1035 NSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF 1094

Query: 264  DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
             R++ K + SW+ MI  +   G GK+A+ +F  M    V P+ ITF +LL AC ++GL+ 
Sbjct: 1095 RRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIG 1154

Query: 324  EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            EG + F SM  D+ + P ++HY CMVDLLGRAG LDEA  LI +M ++ D  +WGALLG+
Sbjct: 1155 EGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGS 1214

Query: 384  CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
            CRIHKN+  AE AAK+L + +P N  +Y+L+ N+Y+   RW+D+  +R+LM    ++   
Sbjct: 1215 CRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQ 1274

Query: 444  GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
             W+WI++  ++H FS  +  HP + +IY  L  L  +++  GY+PD N    ++DE  K 
Sbjct: 1275 VWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQ 1334

Query: 504  GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
              L SH+EKLAI +GLI    G  IR++KN R+C DCHS  K++S +  R + +RD  RF
Sbjct: 1335 KILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRF 1394

Query: 564  HHFEGGACSCRDYW 577
            HHF  G CSC D+W
Sbjct: 1395 HHFREGKCSCNDFW 1408



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 56/294 (19%)

Query: 121 RDSVSWSVMVGGFSKVADFIN-CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           R+ + W+  V  F   A  ++   E F+E    G+  DS      ++ C    DI +G  
Sbjct: 636 RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN----- 234
           IH  ++K G D+D ++  AL++ Y +C  ++ A Q+F +MP  + + W   I  N     
Sbjct: 696 IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755

Query: 235 -----------------------------------------------KFLLD--VILGTA 245
                                                          +F LD  V L   
Sbjct: 756 LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 815

Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
           +I MY+K G ++ AR +FD M  +N  SW++MI++Y   G    A  LF  + SS + P+
Sbjct: 816 LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 875

Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            +T+  LL      G  EE L +   M  +   +P+    T ++  +   G L+
Sbjct: 876 IVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSMTSVLQAISELGFLN 928


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 283/501 (56%), Gaps = 48/501 (9%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
            Q+HA  V      ++ V + LL +YA    +  A A+F+ ++ ++ VSW+ ++ GF++ 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            D       F E  R G +   +T   V  A      +  G+ +H  ++KSG  +  FV 
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV- 179

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
                                                         G  ++DMYAK GS+
Sbjct: 180 ----------------------------------------------GNTILDMYAKSGSM 193

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
             AR++FD + +K++++W++M+ A+  +G G++A+  F  M    V  N+ITF+S+L AC
Sbjct: 194 IDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTAC 253

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLV+EG + F  M  +  + P++ HY  +VDLLGRAG L++AL  I  M ++    +
Sbjct: 254 SHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAV 312

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           WGALLG+CR+HKN  + + AA  + E  P + G  VLL N+YA+ G+W   A++R +M  
Sbjct: 313 WGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKA 372

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
             +KK P  +W+E+EN +H F   D THP+SEEIY+    +S ++  AGY+P+T++ L  
Sbjct: 373 TGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLH 432

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VDE+ +   L  HSEK+A+AF LI  P G  IRIMKN+R+CGDCHS  +++S +  R I+
Sbjct: 433 VDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIV 492

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD NRFHHF  G+CSC DYW
Sbjct: 493 VRDTNRFHHFSSGSCSCGDYW 513



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 23/218 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q + VHA ++  G   +  V N +L +YA   ++ DA  +F+ + ++D V+W+ M+  F+
Sbjct: 160 QGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFA 219

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DID 192
           +          F E  +CG+ L+  T   ++ AC     +  G+   D++ +  L  +ID
Sbjct: 220 QYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEID 279

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGANKFLLDVILGTAVID--- 248
            +V   +VD+  +  +++DA     +MP +     W  ++G+ +   +  +G    D   
Sbjct: 280 HYV--TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVF 337

Query: 249 ---------------MYAKCGSIDSAREIFDRMRQKNV 271
                          +YA  G  D+A  +   M+   V
Sbjct: 338 ELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGV 375



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 266 MRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA--CSHTGLVE 323
           M  +++ SW+++IA Y  +    +AL L   ML  R  PN  TF SLL A   S +  + 
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL-WGALLG 382
           E +   +  +D      DV   + ++D+  R GR+D A+ + + +  E   G+ W AL+ 
Sbjct: 61  EQIHALTVKYD---WHDDVYVGSALLDMYARCGRMDMAIAVFDQL--ESKNGVSWNALIA 115

Query: 383 A 383
            
Sbjct: 116 G 116


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/558 (34%), Positives = 305/558 (54%), Gaps = 57/558 (10%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +Q+HA  + GG + ++ V      +Y+      +A  +F+ M  R+  +W+  +    + 
Sbjct: 129 KQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQD 188

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
              ++    F++F+    + ++ T    + AC D   + +GR +H  +++S    D  V 
Sbjct: 189 GRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVF 248

Query: 197 AALVDMYAKCKVIDDARQLFDQMPT--RDLVTWT-----------------VMIGANK-- 235
             L+D Y KC  I  +  +F ++ +  R++V+W                  V + A K  
Sbjct: 249 NGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEV 308

Query: 236 ----FLL------------------------------DVILGTAVIDMYAKCGSIDSARE 261
               F++                              ++ +G+A++D+Y KCGSI+ A +
Sbjct: 309 EPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQ 368

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACSHT 319
           +F  M ++N+++W+AMI  Y + G    AL LF  M S    +  + +T VS+L ACS  
Sbjct: 369 VFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRA 428

Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
           G VE GL++F SM   + + P  +HY C+VDLLGR+G +D A + I+ M +     +WGA
Sbjct: 429 GAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGA 488

Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
           LLGAC++H    L ++AA+ L E  P + G++V+ SN+ A+AGRW++   +R  M    +
Sbjct: 489 LLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGI 548

Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
           KK  G++W+ V+N++H F   DS H ++ EI  ML  L  +++ AGY+PD N  L D++E
Sbjct: 549 KKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEE 608

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           E K   ++ HSEK+A+AFGLI  P G  IRI KNLR+C DCHS IK +S I  R IIVRD
Sbjct: 609 EEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRD 668

Query: 560 ANRFHHFEGGACSCRDYW 577
            NRFH F+ G CSC+DYW
Sbjct: 669 NNRFHRFKDGWCSCKDYW 686



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 170/409 (41%), Gaps = 72/409 (17%)

Query: 42  PRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIV-AGGTLTNLIVANKLLY 100
           PR P  +G            F  S++LS R+    R VHA I+    T     + N L+ 
Sbjct: 4   PRPPNLLG-----------SFLESAVLS-RSSLLGRAVHAHILRTHDTPLPSFLCNHLVN 51

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
           +Y+       A  + +    R  V+W+ ++ G      F +    F    R  +  + +T
Sbjct: 52  MYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFT 111

Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
            P V +A       V G+ +H + LK G  +D FV  +  DMY+K  +  +AR +FD+MP
Sbjct: 112 FPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMP 171

Query: 221 TRDLVTWTVMIGA--------------NKFLL---------------------------- 238
            R+L TW   +                 KFL                             
Sbjct: 172 HRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQ 231

Query: 239 ------------DVILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAAYGYH 284
                       DV +   +ID Y KCG I S+  +F R+   ++NV+SW +++AA   +
Sbjct: 232 LHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQN 291

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
            + ++A  +F +     V P      S+L AC+  G +E G R   ++     V  ++  
Sbjct: 292 HEEERACMVF-LQARKEVEPTDFMISSVLSACAELGGLELG-RSVHALALKACVEENIFV 349

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
            + +VDL G+ G ++ A ++   M  E++   W A++G      +VD+A
Sbjct: 350 GSALVDLYGKCGSIEYAEQVFREMP-ERNLVTWNAMIGGYAHLGDVDMA 397


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 195/534 (36%), Positives = 294/534 (55%), Gaps = 58/534 (10%)

Query: 101 IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-GMQLDSY 159
           +YA      D   +F+ M  +D V W+ M+  + +          F++  +  G+  DS 
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
            +  V  A     D+     +H    +  L  +  V  +++ M+ KC   + AR +FD M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 220 PTRDLVTWT-----------------------------------VMIGANKFL------- 237
             RD+++W                                    +M+ A  +L       
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 238 ------------LDVILGTAVIDMYAKCGSIDSAREIFDRM--RQKNVISWSAMIAAYGY 283
                       +D  L  A++DMYAKCG ++ A ++F+ +   ++N  SW+ +I+ YG 
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           HG GK+AL+LF  M    V PN  TF S+L ACSH GL++EG + F+ M    +V  + K
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEM-KRLSVTLEDK 299

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           H+ C+VD+LGRAG L EA  LI+ M     +G+WGALL AC+IH N++L + AA +LL+ 
Sbjct: 300 HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQL 359

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
           +P + G+YVL+SN+YA + +W++V K+R  M  + LKK   ++ IE    I  F   D  
Sbjct: 360 EPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQE 419

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           +P   E+Y+ + +L+ ++++AGY+PD +  LHDV+EE K   L  HSEKLA+AFG++   
Sbjct: 420 NPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKID 479

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            G  IR+ KNLRVC DCHS  K++S I +R IIVRDANRFHHF+GG CSC+DYW
Sbjct: 480 PGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM--KERDSVSWSVMVGGFS 134
           R+ H  IV      +  ++N L+ +YA    L  A  LFNG+   ER++ SW+V++ G+ 
Sbjct: 180 RKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYG 239

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                    E F      G++ + +T   ++ AC     I  GR     + +  + ++  
Sbjct: 240 MHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDK 299

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPT--RDLVTWTVMIGANKFLLDVILG 243
             A +VDM  +  ++ +A  L  +MP+   D V W  ++ A K   ++ LG
Sbjct: 300 HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGV-WGALLLACKIHGNMELG 349


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 300/556 (53%), Gaps = 83/556 (14%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + VH   +      +L V   LL +Y     + DA   F  + ++D + WS M+  +++ 
Sbjct: 260 KSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQS 319

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
                  E F +  +  +  + +T   V++AC   + + +G  IH  V+K GL  D FV 
Sbjct: 320 DQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVS 379

Query: 197 AALVDMYAKCKVIDDARQLF-------DQMPTRDLVTWTVMIGANK-------------- 235
            AL+D+YAKC  ++++  LF       D  P   ++   V +G  +              
Sbjct: 380 NALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRV 439

Query: 236 ----------------------------------FLLDVILGTAVIDMYAKCGSIDSARE 261
                                             F  D+++  A+IDMYAKCGSI  AR 
Sbjct: 440 QATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARL 499

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +FD M +++ +SW+AMI+ Y  HG                             AC++ GL
Sbjct: 500 VFDLMNKQDEVSWNAMISGYSMHG----------------------------LACANAGL 531

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +++G   F+SM  D  + P ++HYTCMV LLGR G LD+A+KLI+ +  +    +W ALL
Sbjct: 532 LDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALL 591

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GAC IH +++L  ++A+ +LE +PQ+   +VLLSN+YA A RW +VA +R  M R+ +KK
Sbjct: 592 GACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKK 651

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG +WIE +  +H F+VGD++HP+   I  ML  L  K + AGYIP+ N  L DV++E 
Sbjct: 652 EPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEE 711

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L+ HSE+LA++FG+I TP G+ IRIMKNLR+C DCH+ IK +S + +R I+VRD N
Sbjct: 712 KERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDIN 771

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF+ G CSC DYW
Sbjct: 772 RFHHFQEGLCSCGDYW 787



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 167/364 (45%), Gaps = 57/364 (15%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           +HA I   G  +N  V   L+  Y++   +  A  +F+G+  +D VSW+ MV  F++   
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
           F    + F +    G + +++T   V +AC   +   +G+ +H   LKS  ++D +V  A
Sbjct: 221 FKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVA 280

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------AN 234
           L+D+Y K   IDDAR  F+++P +D++ W+ MI                          N
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPN 340

Query: 235 KFLL------------------------------DVILGTAVIDMYAKCGSIDSAREIFD 264
           +F                                DV +  A++D+YAKCG ++++  +F 
Sbjct: 341 QFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFA 400

Query: 265 RMRQKN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
               +N V  W+ +I  +   G G+KAL LF  ML  RV    +T+ S L AC+    +E
Sbjct: 401 ESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 460

Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
            GL++  S+        D+     ++D+  + G + +A +L+  +  ++DE  W A++  
Sbjct: 461 PGLQI-HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDEVSWNAMISG 518

Query: 384 CRIH 387
             +H
Sbjct: 519 YSMH 522



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 159/362 (43%), Gaps = 61/362 (16%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H +I+  G   +L   N LL +Y     L DA  LF+ M ER+++S+  ++ G+++ 
Sbjct: 58  KGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAES 117

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F+   E F    R G +L+ +    +++         +G  IH  + K G + + FV 
Sbjct: 118 VRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVG 177

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
            AL+D Y+ C  +D AR++FD +  +D+V+WT M+                         
Sbjct: 178 TALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFK 237

Query: 234 -NKF----LLDVILGTAVID--------------------------MYAKCGSIDSAREI 262
            N F    +    LG    D                          +Y K G ID AR  
Sbjct: 238 PNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXA 297

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F+ + +K+VI WS MIA Y    Q K+A+++F  M  + VLPN+ TF S+L AC+     
Sbjct: 298 FEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACA----T 353

Query: 323 EEGLRLFSSMW---DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            EGL L + +        +  DV     ++D+  + GR++ ++ L        D   W  
Sbjct: 354 MEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNT 413

Query: 380 LL 381
           ++
Sbjct: 414 VI 415



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 118/263 (44%), Gaps = 21/263 (7%)

Query: 63  FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S L +C  +  +    Q+H  ++  G  +++ V+N L+ +YA    + ++  LF    
Sbjct: 344 FASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESP 403

Query: 120 ERDSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
            R+ V+ W+ ++ G  ++ D       F   +   +Q    T    +RAC     +  G 
Sbjct: 404 HRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGL 463

Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL 238
            IH + +K+  D D  V  AL+DMYAKC  I DAR +FD M  +D V+W  MI       
Sbjct: 464 QIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYS--- 520

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS-----WSAMIAAYGYHGQGKKALDL 293
             + G A     A  G +D  +  F  M Q + I      ++ M+   G  G   KA+ L
Sbjct: 521 --MHGLAC----ANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKL 574

Query: 294 FPMMLSSRVLPNRITFVSLLYAC 316
              +      P+ + + +LL AC
Sbjct: 575 IDEI---PFQPSVMVWRALLGAC 594



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 119/284 (41%), Gaps = 60/284 (21%)

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + +S+     ++ C  + +   G+ +H  +LK G  +D F    L++MY K   + DA +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 215 LFDQMPTRDLVTWTVMIGA------------------------NKFLLDVIL-------- 242
           LFD+MP R+ +++  +I                          N F+   IL        
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC 154

Query: 243 ----------------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                 GTA+ID Y+ CG +D ARE+FD +  K+++SW+ M+  
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           +  +   K+AL LF  M      PN  TF S+  AC      + G  +          R 
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCA---LKSRY 271

Query: 341 DVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++  Y    ++DL  ++G +D+A    E +  +KD   W  ++ 
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEIP-KKDVIPWSFMIA 314


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 314/596 (52%), Gaps = 101/596 (16%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +R +HA+I+  G   +      L+  YA  + L DA  LF+    RD   +S ++   S 
Sbjct: 22  VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 81

Query: 136 VADFINCFETFREFIRCGMQLDS-YTLPFVIRAC-------RDRKDIVMGRLIHDIVLKS 187
            A      E     +RC +  D+ +   FVI +        R R+   +GR +H   + S
Sbjct: 82  SASP----ELALPILRCMLSADALHPDHFVISSVASVFARLRSRR---LGRQLHAHFVVS 134

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDAR-------------------------------QLF 216
             + D  V ++LVDMY KC   DD R                               QLF
Sbjct: 135 PYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLF 194

Query: 217 DQMPTRDLVTWT------------------------------------VMIGANK----- 235
             MP R+L  WT                                    ++IG +      
Sbjct: 195 RSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAF 254

Query: 236 --------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                         FL ++I+G A+IDMY+KC  I SARE+F+ +  ++VISW+ M+   
Sbjct: 255 VLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGE 314

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG+ ++AL L+  M+ +   PN +TFV L+YACSH GLV++G +LF SM +++ + P 
Sbjct: 315 AQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPR 374

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           ++HYTC +DLL R+G L EA +L+ +M  E DE  WGALL AC  +K+ ++    +  LL
Sbjct: 375 LQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLL 434

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E +P++   Y+LLSNVYA  G+W  VAK+R  M    ++K PG++WIE   +   F  G+
Sbjct: 435 ELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGE 494

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
                 EEI   L  +  ++   GY+PDT+  +HD++E  K  +L+ HSE+LA+AFGLI 
Sbjct: 495 VPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIK 554

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +P G+ IR++KNLRVC DCH+ +K +S IT R I+VRD++RFHHFEGG CSC ++W
Sbjct: 555 SPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 190/482 (39%), Positives = 279/482 (57%), Gaps = 57/482 (11%)

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFV 164
           + + +   +F+ M ER+ V+W++M+ G+         F   RE I    M+L+  TL  +
Sbjct: 198 EGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSI 257

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           + AC    D++MGR +H   LK+                                     
Sbjct: 258 LTACSQSGDLMMGRWVHAYALKT------------------------------------- 280

Query: 225 VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
                     +  L++++GTA++DMYAKCG I  A + F +M Q+NV+SW+AM++    H
Sbjct: 281 ---------KEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMH 331

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
           G G+ ALD+FP M      P+ +TF S+L ACSH+GLV++G   F ++   + + P V+H
Sbjct: 332 GLGRAALDIFPQMFK-EAKPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEH 390

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404
           Y CMVDLLGRAGRL+EA  L+  M +  +E + G+LLG+C IH  + L E   + L++  
Sbjct: 391 YACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLD 450

Query: 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTH 464
           PQN  +++LLSN+YA AG+      +R ++ +R +KK+PG + I V  ++HQFS GD +H
Sbjct: 451 PQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSH 510

Query: 465 PQSEEIYRMLVTLSEKLELAGYIPDTNFE-------LHD--VDEEVKVGNLYSHSEKLAI 515
           P++ E+Y ML  +  +L LAGY P+T  +       L D  V++E K   L+SHSEKLAI
Sbjct: 511 PRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAI 570

Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
            FGLI+T  G  + I KNLR+C DCHS IK VS I  R I++RD NRFH F+ G+CSC D
Sbjct: 571 CFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCD 630

Query: 576 YW 577
           YW
Sbjct: 631 YW 632



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 148/315 (46%), Gaps = 22/315 (6%)

Query: 78  QVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGM--KERDSVSWSVMVGGF 133
           ++HA I+  G        + N LL  YA       A  +F+ +    +D+V W+ ++G F
Sbjct: 34  RLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPHSHKDTVDWTTLMGCF 93

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
            +          F E  RCG++ D  TL  +   C    D+V+G   H  ++K GL   +
Sbjct: 94  VRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVE 153

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
             C A++DMYAK  ++ +AR++F +M  + +V+WTV                ++D   + 
Sbjct: 154 KACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTV----------------ILDGVIRS 197

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSL 312
             + + R +FD M ++N ++W+ MIA Y   G  +++  L   M+    +  N +T  S+
Sbjct: 198 EGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSI 257

Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
           L ACS +G +  G  + +          ++   T MVD+  + GR+  A K  + M  ++
Sbjct: 258 LTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMP-QR 316

Query: 373 DEGLWGALLGACRIH 387
           +   W A+L    +H
Sbjct: 317 NVVSWNAMLSGLAMH 331


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/592 (34%), Positives = 315/592 (53%), Gaps = 97/592 (16%)

Query: 45  PMQMGPDCQFTRSVDPK----FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100
           P+   P+      V P+      I  L +  + F++RQVHAQI+      +++   ++  
Sbjct: 9   PIPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGL 68

Query: 101 IYALHKALTDAHALFNGMKER--DSVSWSVMVGGFSK---VADFINCFETFREFIRCGMQ 155
           + A   +   A  +F  ++++  ++  W+  +   ++     D I  F   R++  C   
Sbjct: 69  VCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCP-- 126

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR-- 213
            D++T   V+RAC +  D+  GR++H +V K G   + ++   +V +YA C  + +AR  
Sbjct: 127 -DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLL 185

Query: 214 -----------------------------QLFDQMPTRDLVTWTVM-------------- 230
                                         LF +MP R++ +WT M              
Sbjct: 186 FEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAI 245

Query: 231 ---------------------------IGA-------------NKFLLDVILGTAVIDMY 250
                                      +GA             + F  +V +   +IDMY
Sbjct: 246 HLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMY 305

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
            KCG ++ A ++F+ M ++ V+SWSAMI     HG+ ++AL LF  M    + PN +TF+
Sbjct: 306 VKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFI 365

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            LL+ACSH GL+ EG R F+SM  D+ + P ++HY CMVDLL RAG L EA + I +M +
Sbjct: 366 GLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM 425

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           + +  +WGALLGACR+HKNV++AE A K LLE  P N G+YV+LSN+YA AGRW+D A++
Sbjct: 426 KPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARV 485

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R  M  R++KK PGW+ I V+  +H+F  G+ +HP +E+I++    L E++ L GY+P+T
Sbjct: 486 RKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNT 545

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
           +  L D++E  KV  +  HSEKLA+ FGL+ TP  T IRIMKNLR+C DCHS
Sbjct: 546 SVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTPAETPIRIMKNLRICEDCHS 597


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 314/596 (52%), Gaps = 101/596 (16%)

Query: 76  IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +R +HA+I+  G   +      L+  YA  + L DA  LF+    RD   +S ++   S 
Sbjct: 104 VRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSH 163

Query: 136 VADFINCFETFREFIRCGMQLDS-YTLPFVIRAC-------RDRKDIVMGRLIHDIVLKS 187
            A      E     +RC +  D+ +   FVI +        R R+   +GR +H   + S
Sbjct: 164 SASP----ELALPILRCMLSADALHPDHFVISSVASVFARLRSRR---LGRQLHAHFVVS 216

Query: 188 GLDIDQFVCAALVDMYAKCKVIDDAR-------------------------------QLF 216
             + D  V ++LVDMY KC   DD R                               QLF
Sbjct: 217 PYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLF 276

Query: 217 DQMPTRDLVTWT------------------------------------VMIGANK----- 235
             MP R+L  WT                                    ++IG +      
Sbjct: 277 RSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAF 336

Query: 236 --------------FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                         FL ++I+G A+IDMY+KC  I SARE+F+ +  ++VISW+ M+   
Sbjct: 337 VLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGE 396

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG+ ++AL L+  M+ +   PN +TFV L+YACSH GLV++G +LF SM +++ + P 
Sbjct: 397 AQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPR 456

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           ++HYTC +DLL R+G L EA +L+ +M  E DE  WGALL AC  +K+ ++    +  LL
Sbjct: 457 LQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLL 516

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           E +P++   Y+LLSNVYA  G+W  VAK+R  M    ++K PG++WIE   +   F  G+
Sbjct: 517 ELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGE 576

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
                 EEI   L  +  ++   GY+PDT+  +HD++E  K  +L+ HSE+LA+AFGLI 
Sbjct: 577 VPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIK 636

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +P G+ IR++KNLRVC DCH+ +K +S IT R I+VRD++RFHHFEGG CSC ++W
Sbjct: 637 SPPGSVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 195/519 (37%), Positives = 296/519 (57%), Gaps = 57/519 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKE 120
            I + ++C ++   R+V  ++V    +  T+++VA      Y     +  A  +F     
Sbjct: 183 LIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVA------YTRSGDMRSAEEVFGRCPV 236

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           +D V+W+ MV G+++ A  +   E F      GM +D  +L   I AC     +     +
Sbjct: 237 KDMVAWTAMVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWV 296

Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240
            +I  ++G                                               F  +V
Sbjct: 297 QEIAERTG-----------------------------------------------FGNNV 309

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS- 299
           ++G+ ++DMYAKCG ID A ++F  M++KNV ++S+MIA    HG+  +A+ LF  M++ 
Sbjct: 310 VVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNR 369

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
           + V PN +TF+ +L ACSH G+V EG   F+ M D + + P   HY CMVDLLGRAG +D
Sbjct: 370 ANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVD 429

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EAL L+ SMSV    G+WGALLGACRIH   ++A++ A+ L + +P++ G+YVLLSN+ A
Sbjct: 430 EALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILA 489

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK-IHQFSVGDSTHPQSEEIYRMLVTLS 478
           +AG+W++V+K+R LM ++RLKK P  +  E  +  +HQF  GD+ HP++ EI + L+ L 
Sbjct: 490 SAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELV 549

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
            KL+L GY+P  +  ++DV++E K   L  HSEKLA++FGL+    G  IRI+KNLR+C 
Sbjct: 550 AKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICD 609

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH F++ VS +    IIVRD  RFHHF+ G CSC  +W
Sbjct: 610 DCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648


>gi|414879360|tpg|DAA56491.1| TPA: hypothetical protein ZEAMMB73_164599 [Zea mays]
          Length = 520

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 191/489 (39%), Positives = 273/489 (55%), Gaps = 49/489 (10%)

Query: 91  NLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           +L VAN L+  YA   H     A A+F+ M  RD V+W+ ++ G ++          +  
Sbjct: 79  HLHVANALVDAYARLPHAGAAAARAVFDEMPRRDVVTWTSLLTGLARAGAHGAAVRAYHG 138

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            +  G+Q D + +P  + +C     + +GR +H   ++ GL   + V  +LV MYAK   
Sbjct: 139 MVASGVQPDEFAVPAALSSCAASTALDLGRSVHAAAVRLGLRPFRSVENSLVSMYAKTGA 198

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
           + DAR +FD MP R  +TWT                                        
Sbjct: 199 LRDARAVFDAMPARCTITWT---------------------------------------- 218

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
                  A+I  Y  +G+G+++L+++  M+ S   P+ +TF+ LL+ACSH GLV+ G   
Sbjct: 219 -------ALIVGYAQNGRGRQSLEVYADMVRSGCRPDYVTFIGLLFACSHAGLVDAGRAH 271

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F SM   + + P   HY CMVDLLGRAGRLDEA+ L+   S E D  +W +LLGACR+H+
Sbjct: 272 FRSMVPVYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVHQ 331

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE AA+ +    P +   YV+LSN+Y+ A RW DVA+IR LM  R + K PG +W+
Sbjct: 332 NAELAERAAEMVWRLDPADAVPYVMLSNLYSRARRWGDVARIRALMKARGVTKEPGCSWV 391

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
            V    H F V D  HP++ EIYR +  ++E++ + GY+PDT++ L D   E +   L  
Sbjct: 392 GVNGITHLFHVEDRDHPRAAEIYRKVEEMTERIRVEGYVPDTDWALQDEVPEWRQRGLAY 451

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSE+LA+AFGL+A P    IR+ KNLRVCGDCH+ IK V+ +  R II+RDAN FHH + 
Sbjct: 452 HSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKVYGREIILRDANCFHHMKD 511

Query: 569 GACSCRDYW 577
           G CSC DYW
Sbjct: 512 GECSCGDYW 520


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 196/514 (38%), Positives = 290/514 (56%), Gaps = 57/514 (11%)

Query: 77  RQVHA----QIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
           +++H     +I  GG   +L V+N +L +YA    + DA  +F GMK RDS SW+ M+ G
Sbjct: 452 KEIHGYILRRITPGGV--SLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDG 509

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           +S+ A F +    F + ++ G  LD  +L  ++ +C     + +G+  H +V K      
Sbjct: 510 YSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAK------ 563

Query: 193 QFVCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250
                                 LF+    P +D +              + +  A+I MY
Sbjct: 564 ----------------------LFNGQDCPHQDSL--------------LSINNALISMY 587

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           +KCGSI  A ++F +M +K+V SW+AMI    +HG   +AL LF  M +  + PN++TF+
Sbjct: 588 SKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFL 647

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE-SMS 369
           +LL AC+H GLV+EG   F SM++D+ + P ++HY CM+DL GR+G+ D A  L+E  ++
Sbjct: 648 ALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGIT 707

Query: 370 VEKDE-----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424
           + K        LW  LLGAC   K +DL   AA  +LE +P++   Y+LL+N+YA++G W
Sbjct: 708 LFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLW 767

Query: 425 QDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELA 484
           +D  K+R  M  + L+K  G +WI+  N+ H F  GD  HPQ +EIY  L  L+      
Sbjct: 768 EDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRM 827

Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH-IRIMKNLRVCGDCHSF 543
           GY+P T   LHDVDE  K   L  HSEKLA++FGL+    G   IR+MKNLRVC DCHS+
Sbjct: 828 GYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSW 887

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +K  S + +R I++RD+ RFH F  G+CSC DYW
Sbjct: 888 MKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 58/280 (20%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
           +K L   + H+ L  A  LF+    RD +SWS ++  +S+  +F   F  F++ +  G+Q
Sbjct: 59  SKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQ 118

Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ- 214
            + ++L  +++      +I + R +H   +++G  +D  + AA + MY++C V++DA++ 
Sbjct: 119 PNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRV 178

Query: 215 --------------------------------LFDQMPTRDLVTWTVMI----------- 231
                                           LF +M +  +V  T +            
Sbjct: 179 FDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSS 238

Query: 232 GANKF------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
           G  K+            L    L  +++  Y KCG++  A ++F+R+ +K+V+SW+AMIA
Sbjct: 239 GEEKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIA 298

Query: 280 AYGYHGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACS 317
           A    G+G+ AL LF  ML     V PNR+TF+SLL A S
Sbjct: 299 ANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVS 338



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 5/158 (3%)

Query: 79  VHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           VH +I+ AG   TNL   N L+  Y     L  A  LF  +  +D VSW+ M+    +  
Sbjct: 247 VHGRIIKAGLEATNLW--NSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRG 304

Query: 138 DFINCFETFREFIRC--GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
           +  N    FR  ++    +Q +  T   ++ A      +  GR IH  + +  L++D  +
Sbjct: 305 EGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSI 364

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233
             +L+  Y+KC+ +  AR++F+++  RD+++W  M+  
Sbjct: 365 TNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAG 402


>gi|242053821|ref|XP_002456056.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
 gi|241928031|gb|EES01176.1| hypothetical protein SORBIDRAFT_03g029620 [Sorghum bicolor]
          Length = 592

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 204/580 (35%), Positives = 311/580 (53%), Gaps = 67/580 (11%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTL-----TNLIVANKLLYIYALHKALTDA--HALF 115
            + +L + R + + +Q+H  ++  G +     ++ ++ + LL  YA   AL D    A  
Sbjct: 15  LLVALSAARALPKGQQLHGHLLKAGHVPATASSHTLLGHHLLTFYA-RCALPDLSLRAFL 73

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI- 174
           +        +WS ++  F++       F+TFR  +  G+      +P   +A    + + 
Sbjct: 74  DLPAPPSPAAWSSLISSFAQNGLAAAAFDTFRRMLAAGVPATDRNIPSAAKAVAAAETLS 133

Query: 175 ---VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM- 230
                   +H +  K+    D FV +A++DMYAKC  + DAR+LFD+MP R++V+W+ + 
Sbjct: 134 RPPFAPHALHGLAAKTPFAGDVFVGSAILDMYAKCGHLADARRLFDEMPERNVVSWSALI 193

Query: 231 -----------------------IGANKFLLDVIL------------------------- 242
                                  +  N F +  I+                         
Sbjct: 194 CGYADAGMHPAAMGIFRLALEEAVPVNDFTVSSIIRVCAAATLFELGAQVHARATKTALD 253

Query: 243 -----GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
                G++++ +Y+KCG ++ A  +F+   +KN+  W+A++ A   HG    A + F  M
Sbjct: 254 ASPFVGSSLVSVYSKCGLVECAYRVFNEAPEKNLGIWNAVLIASAQHGHTAAAFERFMEM 313

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
            ++   PN ITF+ L+ ACSH GLV+EG R FS M  D+ + P  +HY  MVDLLGR GR
Sbjct: 314 QNAGFRPNHITFLCLVTACSHAGLVDEGKRYFSLM-KDYGIEPQAEHYASMVDLLGRVGR 372

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           + EAL LIESM +E  E +WGALL +CRI K+ D AE+AAK L E   ++ G ++LLS+ 
Sbjct: 373 IKEALDLIESMPMEPPESVWGALLMSCRIFKDADTAEIAAKRLFETGSRSSGAHMLLSST 432

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           YA AGR  D A  R  M    ++K  G +W+E   ++H F      H +SEEIY++L  +
Sbjct: 433 YAAAGRHIDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHQRSEEIYKVLEKV 492

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
            EK+E AGY+ DT+  + DVD + K   +  HSE+LAI  GL+  P+G  IR+MKNLRVC
Sbjct: 493 GEKMEAAGYVADTSAVVKDVDGDEKRATVRYHSERLAIGLGLLIVPQGVPIRVMKNLRVC 552

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCHS IK+++  T RV+++RD  RFH FE G CSC D+W
Sbjct: 553 DDCHSAIKYLTKCTGRVVVLRDNRRFHRFEDGVCSCGDFW 592



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/163 (20%), Positives = 73/163 (44%), Gaps = 4/163 (2%)

Query: 62  FFISSLL---SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F +SS++   +   +F++  QVHA+        +  V + L+ +Y+    +  A+ +FN 
Sbjct: 222 FTVSSIIRVCAAATLFELGAQVHARATKTALDASPFVGSSLVSVYSKCGLVECAYRVFNE 281

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
             E++   W+ ++   ++       FE F E    G + +  T   ++ AC     +  G
Sbjct: 282 APEKNLGIWNAVLIASAQHGHTAAAFERFMEMQNAGFRPNHITFLCLVTACSHAGLVDEG 341

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           +    ++   G++      A++VD+  +   I +A  L + MP
Sbjct: 342 KRYFSLMKDYGIEPQAEHYASMVDLLGRVGRIKEALDLIESMP 384


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 208/516 (40%), Positives = 298/516 (57%), Gaps = 17/516 (3%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           +S+     N+   R+V   I     + NL V N  + ++     +  A  LF+ M++RD 
Sbjct: 350 MSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDV 409

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ ++ G++K+++     + F    R  +   +  +    ++ R ++ + + R +   
Sbjct: 410 VSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQ-- 467

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVIL 242
           + KSG   DQ     L+   + C           Q+   D+  W    I   +  L+  L
Sbjct: 468 LTKSGARPDQ---VTLLSTLSACA----------QLGAMDIGEWIHGYIKKERIQLNRNL 514

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            T++IDMY+K G ++ A E+F  +  K+V  WSAMIA    HG+G+ A++LF  M  ++V
Sbjct: 515 ATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQV 574

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN +TF +LL ACSH+GLV+EG RLF  M   + V P  KHY+CMVD+LGRAG L+EAL
Sbjct: 575 KPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEAL 634

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           K IE M +     +WGALLGAC IH N++LAE A   LLE +P N G YVLLSN+YA  G
Sbjct: 635 KFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTG 694

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
            W+ V+++R  M    LKK  G + IE++  +H+F VGD+ HP S +IY  L  +  +L 
Sbjct: 695 DWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLR 754

Query: 483 LAGYIPDTNFELHDV-DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
             GY+ +T   L  V +EE+K   L  HSEK+AIAFGLI       IRI+KNLRVC DCH
Sbjct: 755 SHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCH 814

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +  K VS +  R I++RD  RFHHF GG CSC+DYW
Sbjct: 815 TVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 172/343 (50%), Gaps = 27/343 (7%)

Query: 49  GPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           GP+ +FT  V     I ++   R     + VH   +      ++ V N L++ YA    L
Sbjct: 237 GPN-KFTFPV----LIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHL 291

Query: 109 TDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
             A+ +F  ++   +D VSW+ MV GF +        + F      G+  ++ T+  V+ 
Sbjct: 292 DLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMS 351

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
           AC    ++ +GR + D + ++ + ++  VC A +DM+ KC  ++ AR LFD M  RD+V+
Sbjct: 352 ACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVS 411

Query: 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
           WT                 +ID YAK      AR+IFD M +K++ +W+ +I+ Y   G+
Sbjct: 412 WTT----------------IIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGR 455

Query: 287 GKKALDLFP--MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
            K+AL +F    +  S   P+++T +S L AC+  G ++ G  +   +  +  ++ +   
Sbjct: 456 PKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKE-RIQLNRNL 514

Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            T ++D+  ++G +++A+++  S+   KD  +W A++    +H
Sbjct: 515 ATSLIDMYSKSGDVEKAIEVFHSIG-NKDVFVWSAMIAGLAMH 556



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 13/139 (9%)

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML-SSRVLPNRIT 308
           ++   ++D AR++FD++ Q N+ SW+ +I A        +++ +F  ML  S   PN+ T
Sbjct: 183 FSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFT 242

Query: 309 FVSLLYA-----CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           F  L+ A     C   G    G+ + +S  DD  V   + H+          G LD A  
Sbjct: 243 FPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHF------YASCGHLDLAYL 296

Query: 364 LIESM-SVEKDEGLWGALL 381
           + E +    KD   W +++
Sbjct: 297 VFEMIEGNNKDIVSWNSMV 315


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 194/498 (38%), Positives = 283/498 (56%), Gaps = 56/498 (11%)

Query: 114 LFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173
           +F  M +RD VSW+ ++ G ++     +     RE     ++ DS+TL  V+    +  +
Sbjct: 152 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVN 211

Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA--------------------- 212
           ++ G+ IH   +++G D D F+ ++L+DMYAKC  +DD+                     
Sbjct: 212 LLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAG 271

Query: 213 ---RQLFDQ-----------------------MPTRDLVTWTVMIGA--------NKFLL 238
                +FD+                       MP    +T T+ +G         ++F  
Sbjct: 272 CVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLT-TLHLGKQLHGYIIRSRFDG 330

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           +V + +A++DMYAKCG+I +AR IFD+M   +++SW+AMI  Y  HG    A+ LF  M 
Sbjct: 331 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 390

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              V PN + F+++L ACSH GLV+E  + F+SM  D+ + P ++HY  + DLLGR GRL
Sbjct: 391 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRL 450

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +EA + I  M +E    +W  LL ACR+HKN++LAE  +K L    PQN G YVLLSN+Y
Sbjct: 451 EEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIY 510

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           + AGRW+D  K+R  M  + +KK P  +WIE++NK+H F  GD +HP  + I   L  L 
Sbjct: 511 SAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLL 570

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           E++E  GY+ DT   LHDV+EE K   L SHSE+LAI FG+I+TP GT IR+ KNLRVC 
Sbjct: 571 EQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCV 630

Query: 539 DCHSFIKHVSAITRRVII 556
           DCH+  K +S I  R I+
Sbjct: 631 DCHTATKFISKIVGREIV 648



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/274 (18%), Positives = 115/274 (41%), Gaps = 48/274 (17%)

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
           G   D    P V+++C   KD+  G  +H  +++ G+  D + C AL++MY+K   +++ 
Sbjct: 5   GKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEG 64

Query: 213 -------RQLFDQMP---------------------------TRDLVTWTVMIGANKFLL 238
                   ++   +P                             DL   + ++       
Sbjct: 65  GVQRFCDSKMLGGIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQVNTYK 124

Query: 239 DVILGTAVIDMYAKCGS----IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
            V       D+Y+K       + S R++F+ M +++++SW+ +I+    +G  + AL + 
Sbjct: 125 KVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMV 184

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR----PDVKHYTCMVD 350
             M ++ + P+  T  S+L   +    + +G  +       +A+R     DV   + ++D
Sbjct: 185 REMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHG-----YAIRNGYDADVFIGSSLID 239

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
           +  +  R+D++ ++   M  + D   W +++  C
Sbjct: 240 MYAKCTRVDDSCRVF-YMLPQHDGISWNSIIAGC 272


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 198/489 (40%), Positives = 274/489 (56%), Gaps = 49/489 (10%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NL   N +L  YA    L  A  +F  M  RD VSWS M+ GF+    F   F  FRE +
Sbjct: 199 NLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELL 258

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R  ++ +  +L  V+ AC        G+++H  V K+G                      
Sbjct: 259 REEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAG---------------------- 296

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-QK 269
                                    FL    +  A+ID Y+KCG++  AR +F  M   +
Sbjct: 297 -------------------------FLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVAR 331

Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
           +++SW+++IA    HG G++A+ LF  M  S V P+ ITF+SLLYACSH+GLVEEG  LF
Sbjct: 332 SIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLF 391

Query: 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
           S M + + + P ++HY CMVDL GRA RL +A + I  M V  +  +W  LLGAC IH N
Sbjct: 392 SKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGN 451

Query: 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIE 449
           +++AE+    L E  P N G +VLLSNVYA AG+W+DV+ IR  MT   +KK PGW+ IE
Sbjct: 452 IEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIE 511

Query: 450 VENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYS 508
           ++  I+ F  G+  +  +EE +  L  +  +L   AGY P     LHD++EE K  ++  
Sbjct: 512 IDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSK 571

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSEKLA AFG+   P+G  +RI+KNLRVCGDCH+ +K +S + +  IIVRD +RFH F+ 
Sbjct: 572 HSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKD 631

Query: 569 GACSCRDYW 577
           G CSCRDYW
Sbjct: 632 GFCSCRDYW 640



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 154/351 (43%), Gaps = 35/351 (9%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL------FN 116
           ++S L  C ++   +Q+HAQI   G  T+ +V  KLL    LH A+T + AL      F+
Sbjct: 5   WVSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLL----LHCAITISDALHYALRLFH 60

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIV 175
                D+   + ++   S     ++    F +  R   +  DS+T  F ++A  + + + 
Sbjct: 61  HFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLR 120

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
            G  +H    + G D   FV   L+ MYA+C     AR++FD+M   ++VTW  ++ A  
Sbjct: 121 PGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAF 180

Query: 236 FLLDV-----ILG----------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
              DV     + G            ++  YAK G +  AR +F  M  ++ +SWS MI  
Sbjct: 181 RCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVG 240

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           + ++G   +A   F  +L   +  N ++   +L AC+  G  E     F  +   F  + 
Sbjct: 241 FAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFE-----FGKILHGFVEKA 295

Query: 341 DVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
              +       ++D   + G +  A  + ++M V +    W +++    +H
Sbjct: 296 GFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMH 346


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 204/576 (35%), Positives = 311/576 (53%), Gaps = 59/576 (10%)

Query: 61  KFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
           ++  + +LSC      + + +Q H  ++  G L +  V N L+++Y+    +  A  + +
Sbjct: 128 EYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILD 187

Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
            +   D  S++ ++    +        +  +  +   +  DS T   V+  C   +D+ +
Sbjct: 188 TVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQL 247

Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--- 233
           G  IH  +LK+GL  D FV + L+D Y KC  + +AR+ FD +  R++V WT ++ A   
Sbjct: 248 GLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQ 307

Query: 234 ---------------------NKFLLDVIL------------------------------ 242
                                N+F   V+L                              
Sbjct: 308 NGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIV 367

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
           G A+I+MY+K G+IDS+  +F  M  ++VI+W+AMI  Y +HG GK+AL +F  M+S+  
Sbjct: 368 GNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGE 427

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN +TF+ +L AC H  LV+EG   F  +   F V P ++HYTCMV LLGRAG LDEA 
Sbjct: 428 CPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAE 487

Query: 363 KLIESMS-VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             +++ + V+ D   W  LL AC IH+N +L +   +++++  P + G Y LLSN++A A
Sbjct: 488 NFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKA 547

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            +W  V KIR LM  R +KK PG +W+++ N  H F    S HP+S +I+  +  L   +
Sbjct: 548 RKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMI 607

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY PD    LHDV++E K G L  HSEKLA+A+GL+  P    IRI+KNLR+C DCH
Sbjct: 608 KPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCH 667

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             +K +S  T R+IIVRDANRFHHF  G C+C D+W
Sbjct: 668 IAVKLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 176/408 (43%), Gaps = 79/408 (19%)

Query: 40  MNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT---NLIVAN 96
           + P   M +   C     V+   F ++  S R  F  + +HAQ+V     +   ++   N
Sbjct: 9   VTPAFSMYLPHPCSLKEVVNLLKFSATAKSLR--FG-KTIHAQLVVRNQTSKDSDITQIN 65

Query: 97  KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156
            L+ +Y+       A  LF+ M +R+ VSWS ++ G+    + +     FR  +     L
Sbjct: 66  SLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLV----SL 121

Query: 157 DS-----YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
           DS     Y    V+  C D   +  G+  H  +LKSGL + Q+V  AL+ MY++C  +D 
Sbjct: 122 DSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDS 181

Query: 212 ARQLFDQMPTRDL-----------------------------------VTWTVMIGANKF 236
           A Q+ D +P  D+                                   VT+  ++G    
Sbjct: 182 AMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQ 241

Query: 237 LLDVILG-------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
           + D+ LG                   + +ID Y KCG + +AR+ FD +R +NV++W+A+
Sbjct: 242 IRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAV 301

Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
           + AY  +G  ++ L+LF  M      PN  TF  LL AC+    +  G  L   +     
Sbjct: 302 LTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRI----- 356

Query: 338 VRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V    K++      ++++  ++G +D +  +  +M + +D   W A++
Sbjct: 357 VMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNM-MNRDVITWNAMI 403


>gi|242055215|ref|XP_002456753.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
 gi|241928728|gb|EES01873.1| hypothetical protein SORBIDRAFT_03g041980 [Sorghum bicolor]
          Length = 521

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 192/490 (39%), Positives = 271/490 (55%), Gaps = 50/490 (10%)

Query: 91  NLIVANKLLYIYA---LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
           +L VAN L+  YA          A A+F+ M  RD V+W+ ++ G ++          + 
Sbjct: 79  HLHVANALVDAYARLPCAGGAATARAVFDEMPRRDVVTWTSLLTGLARAGAHAAAVRAYH 138

Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
             +  G+Q D + +  V+ +C     + +GR +H   +  GL   + V  +LV MYAK  
Sbjct: 139 GMVAAGVQTDEFAVAAVLSSCAGSTALDVGRSVHAAAVHLGLCPFRSVGNSLVSMYAKTG 198

Query: 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267
            + DAR +FD MP R  +TWT                                       
Sbjct: 199 ALHDARAVFDAMPARCTITWT--------------------------------------- 219

Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
                   A+I  Y  +G+G+++L+++  M+ S   P+ +TF+ LL+ACSH GLV+ G  
Sbjct: 220 --------ALIVGYAQNGRGRRSLEVYTDMVRSGCRPDYVTFIGLLFACSHAGLVDAGRD 271

Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            F SM  D+ + P   HY CMVDLLGRAGRLDEA+ L+   S E D  +W +LLGACR+H
Sbjct: 272 HFRSMAVDYGIAPGPDHYACMVDLLGRAGRLDEAMDLLNRSSTELDATVWKSLLGACRVH 331

Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
           +N +LAE AA+ +    P +   YV+LSN+Y+ A RW DVA+IR LM  R + K PG +W
Sbjct: 332 RNAELAERAAEMVWRLDPTDAVPYVMLSNLYSRARRWGDVARIRALMKARGITKEPGCSW 391

Query: 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLY 507
           + V    H F V D  HP++ EIYR +  ++E++   GY+PDT++ L D   E +   L 
Sbjct: 392 VGVNGVTHLFHVEDRGHPRAAEIYRKVEEMTERIRAEGYVPDTDWALQDEAPEGRERGLA 451

Query: 508 SHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567
            HSE+LA+AFGL+A P    IR+ KNLRVCGDCH+ IK V+    RVII+RDAN FHH +
Sbjct: 452 YHSERLAVAFGLLAVPAAAPIRVFKNLRVCGDCHTAIKMVAKAYGRVIILRDANCFHHMK 511

Query: 568 GGACSCRDYW 577
            G CSC DYW
Sbjct: 512 DGECSCGDYW 521


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 296/526 (56%), Gaps = 60/526 (11%)

Query: 59  DPKFFISSLL----SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
           DP F  +SL+    SC      RQ   +I    T  +L   N +++  A    +  A  L
Sbjct: 94  DP-FVQTSLINMYSSCGTPTFARQAFDEI----TQPDLPSWNAIIHANAKAGMIHIARKL 148

Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-GMQL--DSYTLPFVIRACRDR 171
           F+ M E++ +SWS M+ G+    ++      FR      G QL  + +T+  V+ AC   
Sbjct: 149 FDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARL 208

Query: 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI 231
             +  G+ +H  + K+G+ I                                        
Sbjct: 209 GALQHGKWVHAYIDKTGMKI---------------------------------------- 228

Query: 232 GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM-RQKNVISWSAMIAAYGYHGQGKKA 290
                  DV+LGT++IDMYAKCGSI+ A+ IFD +  +K+V++WSAMI A+  HG  ++ 
Sbjct: 229 -------DVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEEC 281

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           L+LF  M++  V PN +TFV++L AC H GLV EG   F  M +++ V P ++HY CMVD
Sbjct: 282 LELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVD 341

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           L  RAGR+++A  +++SM +E D  +WGALL   RIH +V+  E+A   LLE  P N   
Sbjct: 342 LYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSA 401

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLLSNVYA  GRW++V  +RDLM  R +KK+PG + +EV+  I +F  GD++HP+   +
Sbjct: 402 YVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNL 461

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y ML  + ++LE  GY  +T   L D+DEE K   L  HSEKLAIA+  + T  GT IRI
Sbjct: 462 YVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGTTIRI 521

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
           +KNLR+C DCH  IK +S    R IIVRD NRFHHF+ G CSC+DY
Sbjct: 522 VKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 23/234 (9%)

Query: 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLF 216
           D +T PF++++         GR +H  +L  GL  D FV  +L++MY+ C     ARQ F
Sbjct: 62  DLHTFPFLLQSINTPHR---GRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAF 118

Query: 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276
           D++   DL +W  +I AN                AK G I  AR++FD+M +KNVISWS 
Sbjct: 119 DEITQPDLPSWNAIIHAN----------------AKAGMIHIARKLFDQMPEKNVISWSC 162

Query: 277 MIAAYGYHGQGKKALDLFPMMLS---SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           MI  Y   G+ K AL LF  + +   S++ PN  T  S+L AC+  G ++ G +   +  
Sbjct: 163 MIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHG-KWVHAYI 221

Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           D   ++ DV   T ++D+  + G ++ A  + +++  EKD   W A++ A  +H
Sbjct: 222 DKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMH 275


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 182/474 (38%), Positives = 274/474 (57%), Gaps = 56/474 (11%)

Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
           +   ++R+C    +  +G   H  ++K G + D  +   L+D YAK   +++AR LFD M
Sbjct: 32  SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNM 91

Query: 220 ---------------------------------------PTR----DLVTWTVMIGA--- 233
                                                  PT      L++    +GA   
Sbjct: 92  TERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDM 151

Query: 234 ----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
                      +  +DV+LG A+IDMY KCG++++A ++F  + +KN+  W+++I   G 
Sbjct: 152 GEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGM 211

Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
           +G+G++A+  F +M    + P+ +TFV +L  CSH+GL+  G R FS M   + + P V+
Sbjct: 212 NGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVE 271

Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
           HY CMVDLLGRAG L EAL+LI +M ++ +  + G+LL AC+IHK+  L E   + LLE 
Sbjct: 272 HYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLEL 331

Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
            P + G+YV LSN+YA+  RW DV   R LM +R + K PG + IEV N +H+F  GD++
Sbjct: 332 DPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTS 391

Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
           HPQ  +I   L  ++++L+  G++P+T   LHD++EE K G +  HSE++A+AFGL++TP
Sbjct: 392 HPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTP 451

Query: 524 EGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            G  IR++KNLR C DCHS +K +S   +R IIVRD  RFHHF  G+CSC DYW
Sbjct: 452 PGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 196/504 (38%), Positives = 286/504 (56%), Gaps = 49/504 (9%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           +  Q+H+ ++  G   ++++   L+  YA    L  A  +F+ +  RD  +W+ ++ G +
Sbjct: 118 ETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLA 177

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
           + +        F      G +++  ++   + AC     +  G  +H  V K  LDI+  
Sbjct: 178 QGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQ 237

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           VC                                                AVIDMYAKCG
Sbjct: 238 VC-----------------------------------------------NAVIDMYAKCG 250

Query: 255 SIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
             D    +F  M   K+V++W+ MI A+  HG G +AL+LF  M  ++V  + +T++++L
Sbjct: 251 FADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVL 310

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            AC+H GLVEEG+RLF  M     V  +VKHY  +VDLLGRAGRL EA ++I SM +  D
Sbjct: 311 CACNHAGLVEEGVRLFDEMVGR-GVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPD 369

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
             LW +LLGAC+ + NV++AEMA++ L+E    + G +VLLSNVYA   RW+DV ++R+ 
Sbjct: 370 VVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREA 429

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M  R ++K+PG+++IEVE  IH+F  GD +HP   EIY  L  +  +++  GY+ +T+  
Sbjct: 430 MKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLV 489

Query: 494 LHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRR 553
           LHD+ EE K   L  HSEKLA+AFGLI+T EGT IR+ KNLR+CGDCH  IK +S I  +
Sbjct: 490 LHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQ 549

Query: 554 VIIVRDANRFHHFEGGACSCRDYW 577
            IIVRD  RFH F+ G+CSCRDYW
Sbjct: 550 EIIVRDRARFHRFKDGSCSCRDYW 573


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 318/583 (54%), Gaps = 59/583 (10%)

Query: 54  FTRSVDPKFFISSLL--SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKAL 108
           F+    P  F+++++  SC N  +I   +Q H   +  G +++  V N L+Y+Y+L    
Sbjct: 128 FSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGN 187

Query: 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168
            +A  + + +   D   +S  + G+ +   F    +  R+        ++ T    +R  
Sbjct: 188 GEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLF 247

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC-------KVIDD---------- 211
            + +D+ +   +H  +++ G + +   C AL++MY KC       +V DD          
Sbjct: 248 SNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNT 307

Query: 212 --------------ARQLFDQMPTRDL----VTWTVMIGA-------------------N 234
                         A  LF +M T+++     T+ +++ +                   +
Sbjct: 308 TIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKS 367

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
            +   V++G A+++MYAK GSI+ AR+ F  M  +++++W+ MI+   +HG G++AL+ F
Sbjct: 368 GYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHHGLGREALEAF 427

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+ +  +PNRITF+ +L ACSH G VE+GL  F+ +   F V+PD++HYTC+V LL +
Sbjct: 428 DRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSK 487

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           AG   +A   + +  +E D   W  LL AC + +N  L +  A+  +E+ P + G YVLL
Sbjct: 488 AGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLL 547

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN++A +  W+ VAK+R LM  R +KK PG +WI + N+ H F   D+ HP+   IY  +
Sbjct: 548 SNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKV 607

Query: 475 VTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNL 534
             +  K++  GY PD     HDVDEE +  NL  HSEKLA+A+GLI TPE + + + KN+
Sbjct: 608 KEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNV 667

Query: 535 RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           R+C DCHS IK +S I++R I++RD+NRFHHF  G CSC DYW
Sbjct: 668 RICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 141/347 (40%), Gaps = 57/347 (16%)

Query: 96  NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG-M 154
           N L+ +Y   +    A  LF+ M ER+ VSW  M+ G+          + F+     G  
Sbjct: 73  NSLINLYVKCRETVRARKLFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGES 132

Query: 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
           + + +    V ++C +   I  G+  H   LK GL   +FV   LV MY+ C    +A +
Sbjct: 133 RPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIR 192

Query: 215 LFDQMPTRDLVTWTVMI------GANKFLLDVILGT------------------------ 244
           + D +P  DL  ++  +      GA K  LDV+  T                        
Sbjct: 193 VLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRD 252

Query: 245 ------------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
                                   A+I+MY KCG +  A+ +FD    +N+   + ++ A
Sbjct: 253 LNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDA 312

Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
           Y      ++AL+LF  M +  V PN  TF  LL + +   L+++G  L   +      R 
Sbjct: 313 YFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQG-DLLHGLVLKSGYRN 371

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            V     +V++  ++G +++A K    M+  +D   W  ++  C  H
Sbjct: 372 HVMVGNALVNMYAKSGSIEDARKAFSGMTF-RDIVTWNTMISGCSHH 417



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/261 (18%), Positives = 105/261 (40%), Gaps = 59/261 (22%)

Query: 164 VIRACRDRKDIVMGRLIHD---IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
           +++ C +   + +G  IH    +  +S    D +   +L+++Y KC+    AR+LFD MP
Sbjct: 37  LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96

Query: 221 TRDLVTWTVMIGA-------------------------NKFLLDVILGT----------- 244
            R++V+W  M+                           N+F+  V+  +           
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGK 156

Query: 245 -------------------AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                               ++ MY+ C     A  + D +   ++  +S+ ++ Y   G
Sbjct: 157 QFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECG 216

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
             K+ LD+     +   + N +T++S L   S+   +   L++ S M   F    +V+  
Sbjct: 217 AFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMV-RFGFNAEVEAC 275

Query: 346 TCMVDLLGRAGRLDEALKLIE 366
             ++++ G+ G++  A ++ +
Sbjct: 276 GALINMYGKCGKVLYAQRVFD 296


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  363 bits (933), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 194/519 (37%), Positives = 296/519 (57%), Gaps = 20/519 (3%)

Query: 63  FISSLLSCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S L +C N+    +  Q+HAQI   G   ++   N L+  YA+      AH LF+ + 
Sbjct: 118 FPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIP 177

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           E D VSW+ ++ G+ K          FR+         +  +   ++A  +++ +   +L
Sbjct: 178 EPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEAL---QL 234

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
            H++   S ++ D    A  +   A+   ++  + +               +   +  +D
Sbjct: 235 FHEMQ-NSDVEPDNVSLANALSACAQLGALEQGKWIHS------------YLNKTRIRMD 281

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
            +LG  +IDMYAKCG ++ A E+F  +++K+V +W+A+I+ Y YHG G++A+  F  M  
Sbjct: 282 SVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQK 341

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
             + PN ITF ++L ACS+TGLVEEG  +F SM  D+ ++P ++HY C+VDLLGRAG LD
Sbjct: 342 MGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLD 401

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           EA + I+ M ++ +  +WGALL ACRIHKN++L E   + L+   P + G YV  +N++A
Sbjct: 402 EAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHA 461

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
              +W   A+ R LM  + + K+PG + I +E   H+F  GD +HP+ E+I      +  
Sbjct: 462 MDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRR 521

Query: 480 KLELAGYIPDTNFELHD-VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCG 538
           KLE  GY+P+    L D VD++ +   ++ HSEKLAI +GLI T  GT IRIMKNLRVC 
Sbjct: 522 KLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCK 581

Query: 539 DCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           DCH   K +S I +R I++RD  RFHHF  G CSC DYW
Sbjct: 582 DCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 159/340 (46%), Gaps = 23/340 (6%)

Query: 52  CQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD- 110
           C F+   +    +S L  C    +++Q+HA+++  G + +     K L  + +    +D 
Sbjct: 6   CSFSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLS-FCISSTSSDF 64

Query: 111 ---AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
              A  +F+G    D+  W++M+ GFS   +       ++  +      ++YT P +++A
Sbjct: 65  LPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKA 124

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
           C +         IH  + K G + D +   +L++ YA       A  LFD++P  D V+W
Sbjct: 125 CSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSW 184

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
                            +VI  Y K G +D A  +F +M +KN ISW+ MI+ Y      
Sbjct: 185 ----------------NSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMN 228

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
           K+AL LF  M +S V P+ ++  + L AC+  G +E+G +   S  +   +R D      
Sbjct: 229 KEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSYLNKTRIRMDSVLGCV 287

Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
           ++D+  + G ++EAL++ +++  +K    W AL+     H
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIK-KKSVQAWTALISGYAYH 326


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 190/501 (37%), Positives = 286/501 (57%), Gaps = 48/501 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           QVH  +   G   ++IV N L+ +Y     + +A  +FNGM E+   SWS ++G  + V 
Sbjct: 119 QVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVE 178

Query: 138 DFINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +  C     +    G  +++  TL  V+ AC       +G+ IH I+L+          
Sbjct: 179 MWNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLR---------- 228

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
                                                N   L+V++ T++IDMY K G +
Sbjct: 229 -------------------------------------NISELNVVVKTSLIDMYVKSGCL 251

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           +    +F  M +KN  S++ MI+    HG+GK+AL +F  M+   + P+ + +V +  AC
Sbjct: 252 EKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSAC 311

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           SH GLVEEGL+ F SM  +  + P V+HY CMVDLLGR G L EA +LI+SMS++ ++ +
Sbjct: 312 SHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDVI 371

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W +LL AC++H N+++ ++AA++L      N G Y++L+N+YA A +W DVAKIR  +  
Sbjct: 372 WRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLAE 431

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           R L + PG++ IE + K+++F   D + PQ   IY M+  +  +L+  GYIPDT+  L D
Sbjct: 432 RNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLLD 491

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           VD+E K   L  HS+KLAIAFGLI T EG+ +RI +NLR+C DCH++ K++S I  R I 
Sbjct: 492 VDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREIT 551

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           VRD  RFHHF+ G+CSC+DYW
Sbjct: 552 VRDRLRFHHFKNGSCSCKDYW 572


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/561 (34%), Positives = 299/561 (53%), Gaps = 62/561 (11%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+H   +  G    + V N L+ +Y+    + +A  +F  + +R  +SW+ M+ GF    
Sbjct: 499  QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 558

Query: 138  DFINCFETFREFIRCGMQ--LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI--DQ 193
                  +TF       ++   D +TL  +++AC     I  G+ IH  +++SG       
Sbjct: 559  YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 618

Query: 194  FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------------- 231
             +  +LVD+Y KC  +  AR+ FDQ+  + +++W+ +I                      
Sbjct: 619  TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQEL 678

Query: 232  --GANKFLLDVILG------------------------------TAVIDMYAKCGSIDSA 259
                + F L  I+G                               +V+DMY KCG +D A
Sbjct: 679  NSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEA 738

Query: 260  REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             + F  M+ K+VISW+ +I  YG HG GKK++ +F  ML   + P+ + ++++L ACSH+
Sbjct: 739  EKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHS 798

Query: 320  GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            G+++EG  LFS + +   ++P V+HY C+VDLLGRAGRL EA  LI++M ++ + G+W  
Sbjct: 799  GMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQT 858

Query: 380  LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
            LL  CR+H +++L +   K LL    +NP +YV++SN+Y  AG W +    R+L   + L
Sbjct: 859  LLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGL 918

Query: 440  KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVD 498
            KK  G +W+E+E ++H F  G+ +HP +  I   L     +L E  GY+     ELHD+D
Sbjct: 919  KKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDID 978

Query: 499  EEVKVGNLYSHSEKLAIAFGLIA---TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
            +E K  NL +HSEKLAI   L       +G  IR+ KNLRVC DCH FIK +S IT+   
Sbjct: 979  DESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAY 1038

Query: 556  IVRDANRFHHFEGGACSCRDY 576
            +VRDA RFH FE G CSC DY
Sbjct: 1039 VVRDAVRFHSFEDGCCSCGDY 1059



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 126/299 (42%), Gaps = 61/299 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           NLI +N L+ +Y   +    A+ +F+ M ER+ VSWS ++ G     D       F E  
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
           R G+  + +T    ++AC     +  G  IH   LK G ++   V  +LVDMY+KC  I+
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 530

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           +A ++F ++  R L++W  M                                        
Sbjct: 531 EAEKVFRRIVDRSLISWNAM---------------------------------------- 550

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTGLVEEGLRL 328
                  IA + + G G KALD F MM  + +   P+  T  SLL ACS TG++  G ++
Sbjct: 551 -------IAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQI 603

Query: 329 FSSMWDDFAVR-----PDVKHYT-CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
                  F VR     P     T  +VDL  + G L  A K  + +  EK    W +L+
Sbjct: 604 HG-----FLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSSLI 656



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
           L++I    +IDMY KC     A ++FD M ++NV+SWSA+++ +  +G  K +L LF  M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAG 356
               + PN  TF + L AC     +E+GL++    +   F +  +V +   +VD+  + G
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN--SLVDMYSKCG 527

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGA 383
           R++EA K+   + V++    W A++  
Sbjct: 528 RINEAEKVFRRI-VDRSLISWNAMIAG 553


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 202/567 (35%), Positives = 310/567 (54%), Gaps = 80/567 (14%)

Query: 80  HAQIVAGGTLTNLIVANKLLYIYALH--------------KALTDAHALFNGMKERDSVS 125
           HA ++  G  ++  V N ++ +YA                ++   A  LF+ M ER+ ++
Sbjct: 48  HAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVIT 107

Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
           W+ MV G++KV D     E  R +  C  +    +   ++              + D +L
Sbjct: 108 WTAMVTGYAKVKDL----EAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML 163

Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV---------------- 229
             G   +     A++  Y +   +D AR+LF+ MP R++VTW                  
Sbjct: 164 --GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 230 ----MIGANKFLLDVILGTAVID-----------------------------------MY 250
               MI A K   D +   +VI                                    MY
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 281

Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
           ++CGS++ A+ +F  M  ++V+S++ +I+ +  HG G +A++L   M    + P+R+TF+
Sbjct: 282 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 341

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
            +L ACSH GL+EEG ++F S+ D     P + HY CMVDLLGR G L++A + +E M +
Sbjct: 342 GVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPM 396

Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
           E   G++G+LL A RIHK V+L E+AA  L E +P N G+++LLSN+YA+AGRW+DV +I
Sbjct: 397 EPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERI 456

Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
           R+ M +  +KK  GW+W+E   K+H+F V D +H +S++IY++L+ L +K+  AGYI D 
Sbjct: 457 REAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADK 516

Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
           +  L DV+EE K   + +HSEKLAI + L+ +  G  IR++KNLRVC DCH+ IK +S +
Sbjct: 517 SCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKL 576

Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
             RVIIVRD NRFH F  G CSC+DYW
Sbjct: 577 EGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 150/326 (46%), Gaps = 51/326 (15%)

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
           +S + D       + +   CG++ D++  P +I++         G   H  VLK G   D
Sbjct: 5   YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHGSD 59

Query: 193 QFVCAALVDMYAKCKVID---------------DARQLFDQMPTRDLVTWTVMIGANKFL 237
            FV  A++DMYA+ KV D                A+ LFD MP R+++TWT M+      
Sbjct: 60  AFVRNAVIDMYAR-KVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTG---- 114

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
                       YAK   +++AR  FD M +++V+SW+AM++ Y  +G  ++AL LF  M
Sbjct: 115 ------------YAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM 162

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           L +    N +T+ +++ A    G ++   +LF++M        +V  +  M+    + G+
Sbjct: 163 LGA--YRNSVTWNAMISAYMRVGDLDSARKLFNTM-----PGRNVVTWNSMIAGYAQNGQ 215

Query: 358 LDEALKLIESMSVEK----DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHY 411
              A++L + M   K    DE    +++ AC     ++L     + L E Q +    GH 
Sbjct: 216 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHN 275

Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRR 437
            ++  +Y+  G  +D  ++   M  R
Sbjct: 276 AMIF-MYSRCGSMEDAKRVFQEMATR 300


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 309/574 (53%), Gaps = 92/574 (16%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I    ++  YA    L  A   F+ M ER  VSW+ M   +++          F + +
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---- 206
             G+  D  T    I +C    D  +   I  ++ +  + ++ FV  AL+DM+AK     
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 207 ---KVIDD-------------------------ARQLFDQMPTRDLVTWTVMI------- 231
               + D+                         AR+LFD MP RD+V+W  MI       
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 232 -----------------------------------GANK---FLLDVI------LG---- 243
                                              GA K   ++LD++      LG    
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            ++I MY+KCGS+  A  IF  M  ++V+S++ +I+ +  +G GK+A+ L   M    + 
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ +T++ +L ACSH GL+ EG  +F S+       P V HY CMVDLLGRAG LDEA  
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKM 545

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           LI+SM ++   G++G+LL A RIHK V L E+AA  L E +PQN G+YVLLSN+YA+ GR
Sbjct: 546 LIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGR 605

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W+DV ++R++M +  LKK  G +W+E + ++H+F+VGD +H QS++IY++L  L  K++ 
Sbjct: 606 WEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKR 665

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            G++ D +  L DV+EE K   L +HSEKLAI F L+ +  GT IR++KNLR+C DCH+ 
Sbjct: 666 VGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTA 725

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IK +S +  R I+VRD NRFH F  G CSC DYW
Sbjct: 726 IKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 154/335 (45%), Gaps = 36/335 (10%)

Query: 72  NIFQIRQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           NI Q+RQ H  +V     + N  V+  L+    LH       ++F      D+  +S M+
Sbjct: 13  NIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCML 72

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFV----IRACRDRKDIVMGRLIHDIVLK 186
             +S++         F+    C   L+    PFV    I+          G L H  VLK
Sbjct: 73  KYYSRMGAHNQVVSLFK----CTHSLNLRPQPFVYIYLIKLAGKS-----GNLFHAYVLK 123

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------NKFLL 238
            G   D F+  A++DMYAK   +D AR LF+QM  R L  W  MI             +L
Sbjct: 124 LGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVL 183

Query: 239 -------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                  ++I  T+++  YAK G ++SAR  FD M +++V+SW+AM +AY      K+AL
Sbjct: 184 FNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEAL 243

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTG---LVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +LF  ML   + P+  T+V  + +CS  G   L +  LR+         +   VK  T +
Sbjct: 244 NLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ--KHIVLNSFVK--TAL 299

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +D+  + G L+ A  + + +  +++   W  ++ A
Sbjct: 300 LDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISA 334


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/517 (37%), Positives = 291/517 (56%), Gaps = 53/517 (10%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
            IS+ ++C ++   R+V  +++    + ++I    ++  Y+  + +  A  +F     +D
Sbjct: 199 LISAYVACGDVGAARKVFDEML----VKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKD 254

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
            V+W+ MV G+++ A  +   E F +    GM +D  +L   I AC     +     + +
Sbjct: 255 MVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQE 314

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
           I  ++GL                                          G N     V++
Sbjct: 315 IAERNGL------------------------------------------GRN-----VVV 327

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSR 301
           G+ ++DMYAKCG ID AR++F+ M  KNV ++S+MI     HG+    + LF  M+  + 
Sbjct: 328 GSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRAD 387

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           V PN +TF+ +L ACSH G+V+EG   F+ M D + + P   HY CMVDLL R+G + EA
Sbjct: 388 VEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEA 447

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           L L++SM+VE   G+WGALLGACRIH N ++A++AA+ L   +P+  G+YVLLSN  A+A
Sbjct: 448 LDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSNTLASA 507

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK-IHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           G W +V+K+R LM  R LKK P  +W E  +  +HQF  GD+THP   EI + L+ L EK
Sbjct: 508 GEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRLLELREK 567

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           L LAGY+P  +  +++V EE K   L  HSEKLA++FGL+     + IRI+KNLR+C DC
Sbjct: 568 LNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLESRSSIRIVKNLRICEDC 627

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H FI+ VS +    I+VRD  RFHHF  G CSC  +W
Sbjct: 628 HLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 308/580 (53%), Gaps = 72/580 (12%)

Query: 63  FISSLLSCRN-----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F+S   +C +       Q++  H  +   G  ++++VA  L+  YA    +  A   F  
Sbjct: 233 FVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAA 292

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M ER++VSW+ M+  F+++   +   ETF   +  G+     TL   +  C   +D+   
Sbjct: 293 MPERNAVSWTSMIAAFAQIGHLL-AVETFHAMLLEGVVPTRSTLFAALEGC---EDLHTA 348

Query: 178 RLIHDIVLKSGL---------------------------------DIDQFVCAALVDMYA 204
           RL+  I  + G+                                 + D  +  A++ +YA
Sbjct: 349 RLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYA 408

Query: 205 KCKVIDDARQLF-------DQMPTRDLVTWTVMIGANKFLL------------------- 238
           +C+   D R  F       ++  + D + +   + A   L                    
Sbjct: 409 QCR---DRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLD 465

Query: 239 -DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            DV LG A++ MY +CGS+  AR+ FD M  ++ ISW+AM++A   HG+ +   DLF  M
Sbjct: 466 RDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAM 525

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           L       R+ F++LL AC+H GLVE G   FS+M  D  V P  +HY CMVDLLGR GR
Sbjct: 526 LQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGR 585

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           L +A  ++++M V  D   W AL+GACRI+ + +    AA+ +LE +  +   YV L N+
Sbjct: 586 LADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYVALCNI 645

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           Y+ AGRW+D A +R +M    L+KIPG + IE+ +K+H+F V D +HPQSE IY  L  +
Sbjct: 646 YSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERV 705

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
              +E AGY   T   LHDV+EE K   L  HSEKLAIAFG+++TP+G+ +R++KNLRVC
Sbjct: 706 MGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVC 765

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCH+  K +S +  R I+VRD  RFHHF+ GACSC DYW
Sbjct: 766 VDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 164/393 (41%), Gaps = 59/393 (15%)

Query: 57  SVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           ++D   F+S L +C +   +   R +H   V  G     IVA+ L+ +Y    +L DA+A
Sbjct: 125 ALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANA 184

Query: 114 LFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           LF  ++   D V W+ M+   S+        E F   ++ G+  D  T   V +AC    
Sbjct: 185 LFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSP 244

Query: 173 DIVMGRL--IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
            +   ++   H  + ++GL  D  V  ALV+ YA+C  ID AR+ F  MP R+ V+WT M
Sbjct: 245 SLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSM 304

Query: 231 IGA-------------NKFLL-------------------------------------DV 240
           I A             +  LL                                     DV
Sbjct: 305 IAAFAQIGHLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDV 364

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQK--NVISWSAMIAAYGYHGQGKKALDLFPMML 298
            + T ++  YA+C   + A  +F    +   +    +AMIA Y      +    L+   +
Sbjct: 365 AIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAI 424

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              + P+RI +++ L AC+    + EG ++ + +  D  +  DV     +V + G+ G L
Sbjct: 425 ERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSL 484

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
            +A    + M   +DE  W A+L A   H  V+
Sbjct: 485 RDARDAFDGMPA-RDEISWNAMLSASAQHGRVE 516



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 142/347 (40%), Gaps = 70/347 (20%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           +A+ L+Y+Y    +L  A  +F+ +  +  V W+V++  +            F   ++ G
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           + LD+     V+ AC   + +  GRLIH   +++GL + + V +ALV MY +C  + DA 
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDAN 183

Query: 214 QLFDQMPTR-DLVTWTVMIGANK-----------FLLDVILG-----TAVIDMYAKCGSI 256
            LF  +    D+V W  MI AN            F   + LG        + ++  C S 
Sbjct: 184 ALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSS 243

Query: 257 DSAR----------------------------------------EIFDRMRQKNVISWSA 276
            S R                                        E F  M ++N +SW++
Sbjct: 244 PSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTS 303

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS--HTGLVEEGLRLFSSMWD 334
           MIAA+   G    A++ F  ML   V+P R T  + L  C   HT       RL  ++  
Sbjct: 304 MIAAFAQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTA------RLVEAIAQ 356

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           +  V  DV   T +V    R    ++A+++  +    ++EG W A L
Sbjct: 357 EIGVATDVAIVTDLVMAYARCDGQEDAIRVFSA----REEGEWDAAL 399



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D  L ++++ MY +CGS++SA ++F ++  K+++ W+ +I+AY   G    A+ LF  +L
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              +  + I FVS+L ACS    +  G RL      +  +       + +V + GR G L
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGSL 179

Query: 359 DEALKLIESMSVEKDEGLWGALLGA 383
            +A  L   +    D  LW A++ A
Sbjct: 180 RDANALFGHLERHLDVVLWNAMITA 204



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 89/199 (44%), Gaps = 18/199 (9%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAH 112
           S D   +I++L +C ++  +   RQ+HA + A   L  ++ + N ++ +Y    +L DA 
Sbjct: 429 SPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDAR 488

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
             F+GM  RD +SW+ M+   ++     +C + FR  ++ G   +      ++ AC    
Sbjct: 489 DAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAG 548

Query: 173 DIVMG-------RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-RDL 224
            +  G          H +V  +    + + C  +VD+  +   + DA  +   MP   D 
Sbjct: 549 LVEAGCEHFSAMTGDHGVVPAT----EHYGC--MVDLLGRKGRLADAHGIVQAMPVPPDA 602

Query: 225 VTWTVMIGANKFLLDVILG 243
            TW  ++GA +   D   G
Sbjct: 603 ATWMALMGACRIYGDTERG 621


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 210/574 (36%), Positives = 309/574 (53%), Gaps = 92/574 (16%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+I    ++  YA    L  A   F+ M ER  VSW+ M   +++          F + +
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---- 206
             G+  D  T    I +C    D  +   I  ++ +  + ++ FV  AL+DM+AK     
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 207 ---KVIDD-------------------------ARQLFDQMPTRDLVTWTVMI------- 231
               + D+                         AR+LFD MP RD+V+W  MI       
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 232 -----------------------------------GANK---FLLDVI------LG---- 243
                                              GA K   ++LD++      LG    
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430

Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
            ++I MY+KCGS+  A  IF  M  ++V+S++ +I+ +  +G GK+A+ L   M    + 
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490

Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
           P+ +T++ +L ACSH GL+ EG  +F S+       P V HY CMVDLLGRAG LDEA  
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKM 545

Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
           LI+SM ++   G++G+LL A RIHK V L E+AA  L E +PQN G+YVLLSN+YA+ GR
Sbjct: 546 LIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGR 605

Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
           W+DV ++R++M +  LKK  G +W+E + ++H+F+VGD +H QS++IY++L  L  K++ 
Sbjct: 606 WEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKR 665

Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
            G++ D +  L DV+EE K   L +HSEKLAI F L+ +  GT IR++KNLR+C DCH+ 
Sbjct: 666 VGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTA 725

Query: 544 IKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           IK +S +  R I+VRD NRFH F  G CSC DYW
Sbjct: 726 IKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 154/335 (45%), Gaps = 36/335 (10%)

Query: 72  NIFQIRQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           NI Q+RQ H  +V     + N  V+  L+    LH       ++F      D+  +S M+
Sbjct: 13  NIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCML 72

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFV----IRACRDRKDIVMGRLIHDIVLK 186
             +S++         F+    C   L+    PFV    I+          G + H  VLK
Sbjct: 73  KYYSRMGAHNQVVSLFK----CTHSLNLRPQPFVYIYLIKLAGKS-----GNMFHAYVLK 123

Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------NKFLL 238
            G   D F+  A++DMYAK   +D AR LF+QM  R L  W  MI             +L
Sbjct: 124 LGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVL 183

Query: 239 -------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291
                  ++I  T+++  YAK G ++SAR  FD M +++V+SW+AM +AY      K+AL
Sbjct: 184 FNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEAL 243

Query: 292 DLFPMMLSSRVLPNRITFVSLLYACSHTG---LVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           +LF  ML   + P+  T+V  + +CS  G   L +  LR+         +   VK  T +
Sbjct: 244 NLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQ--KHIVLNSFVK--TAL 299

Query: 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
           +D+  + G L+ A  + + +  +++   W  ++ A
Sbjct: 300 LDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISA 334


>gi|357135729|ref|XP_003569461.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Brachypodium distachyon]
          Length = 595

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 311/576 (53%), Gaps = 67/576 (11%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTL-----TNLIVANKLLYIYALHKALTDA--HALFNGMK 119
           L + R + + +Q+H  ++ GG L     ++ ++++ LL  YA   AL +    A  +   
Sbjct: 22  LSAARALPKGQQLHGFLLKGGHLPAIASSHALLSHHLLTFYA-RCALPELCLRAFLDLPA 80

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
              + +WS ++  F++       F+ FR  +  G+     ++P   +A     D +   L
Sbjct: 81  PPPAAAWSSLISSFAQNGLPAAAFDAFRRMLAAGVPATDRSIPSAAKAVAAAADSLRPPL 140

Query: 180 ----IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-- 233
               +H +  K+    D FV +A++DMYAKC  + DAR+LFD+MP R++V+W+ +IG   
Sbjct: 141 APHALHGLASKTPFAEDVFVGSAVLDMYAKCGNLLDARRLFDEMPERNVVSWSALIGGYA 200

Query: 234 ----------------------NKFLLDVIL----------------------------- 242
                                 N F +  I+                             
Sbjct: 201 DAGMHPAALWIFRSALEEAVEVNDFTVSCIVRVCATATLFDLGAQVHARSIKTALDASPF 260

Query: 243 -GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            G++++ +Y+KCG +D A  IF    ++N+  W+A++ A   HG    A + F  M +  
Sbjct: 261 VGSSLVSLYSKCGLVDRAYRIFSAAPERNLGIWNAVLNASAQHGHTATAFERFMEMQNDG 320

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
             PN ITF+ LL ACSH GLV+EG R FS M  ++ + P  +HY  MVDLLGR GR+ EA
Sbjct: 321 FRPNYITFLCLLTACSHAGLVDEGKRYFSLM-KEYTIEPQAEHYAAMVDLLGRVGRITEA 379

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
           L+LIESM +E  E +WGALL ACR+ K+ D A +AAK L +   ++ G ++LLS+ YA A
Sbjct: 380 LELIESMPMEPPESVWGALLMACRMFKDADTAAIAAKRLFQTGSRSSGAHMLLSSTYAAA 439

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
           GR  D A  R  M    ++K  G +W+E   ++H F      HP+S+EIY +L  + EK+
Sbjct: 440 GRHVDAALARKAMRDAGVRKETGLSWLEAAGEVHTFVSNCRRHPRSDEIYNVLEKVGEKM 499

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           E AGY+ DT+  + DV  E K   L  HSE+LAI  GL+  PEG  IR+MKNLRVC DCH
Sbjct: 500 EGAGYVADTSAVVKDVAREEKCETLGYHSERLAIGLGLLIVPEGVPIRVMKNLRVCDDCH 559

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           + IK++S  T RV+I+RD  RFH FE G CSC D+W
Sbjct: 560 NAIKYLSKCTGRVVILRDNRRFHRFEDGLCSCGDFW 595


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 189/487 (38%), Positives = 274/487 (56%), Gaps = 47/487 (9%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           +++  N++L  Y     +T A  +F+ M  RD +SWS +VGG+ K  +       FR  +
Sbjct: 212 DVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMV 271

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
             G++ +   +   + A      +  G+ +H++V +SG+ +   V AALVDMYAKC  + 
Sbjct: 272 EQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVA 331

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
            AR++FD M  RD+  W  MI                     CG                
Sbjct: 332 VAREVFDGMRRRDVFAWNAMI---------------------CG---------------- 354

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
                  +AA   HG G+ A++LF   +S  + P  +TFV +L  CS +GLV EG R F 
Sbjct: 355 -------LAA---HGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFK 404

Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
            + + + + P+++HY CMVDLLGRAG + EA++LIE M +  D  LWG +L +C+ H  V
Sbjct: 405 LIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLV 464

Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
           DL       L+E  P + G+YVLLS +YA A +W +V ++R LM+ R   K  GW+ +E 
Sbjct: 465 DLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEA 524

Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
             K+H+F VGD+ H  S +IY  L  ++++L  AGY+PD +  LHD+ EE KV  +  HS
Sbjct: 525 HGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHS 584

Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
           E+LAIA+G I    G+ IRI+KNLRVCGDCH F K V+ + +R IIVRD +RFHH + G 
Sbjct: 585 ERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGK 644

Query: 571 CSCRDYW 577
           CSC DYW
Sbjct: 645 CSCLDYW 651



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 19/213 (8%)

Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGAN 234
           +G  +H + +K+G   D FV  ALV  Y     +   R++FD++P  RD++TW       
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWN------ 217

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
               +V+ G      Y + G +  ARE+FD M  ++ ISWS ++  Y    + + AL +F
Sbjct: 218 ----EVLAG------YVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVF 267

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
             M+   V PN+   V+ L A +  GL+E G +   ++     +   +     +VD+  +
Sbjct: 268 RNMVEQGVRPNQAAVVTALSAAARLGLLEHG-KFVHNVVQRSGMPVCMNVGAALVDMYAK 326

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
            G +  A ++ + M   +D   W A++     H
Sbjct: 327 CGCVAVAREVFDGMR-RRDVFAWNAMICGLAAH 358



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 31/238 (13%)

Query: 79  VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
           VH  +   G    + V   L+ +YA    +  A  +F+GM+ RD  +W+ M+ G +    
Sbjct: 301 VHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGL 360

Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS---GLDIDQFV 195
             +  E F  FI  G+   + T   V+  C     +  GR    ++++      +++ + 
Sbjct: 361 GRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYG 420

Query: 196 CAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANK----FLLDVILGTAVIDM- 249
           C  +VD+  +  ++ +A +L + M    D V W  ++ + K      L V +G  +I++ 
Sbjct: 421 C--MVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELD 478

Query: 250 -------------YAKCGSIDSAREIFDRMRQKNV---ISWSAMIAAYGYHGQGKKAL 291
                        YAK    D  RE+   M  +       WS M A    HG+  K L
Sbjct: 479 PTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEA----HGKVHKFL 532


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 167/337 (49%), Positives = 240/337 (71%), Gaps = 1/337 (0%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-S 300
           L T+++DMYAK G +  AR +FD++  + +ISW+AMI  +G HG    A +LF  M + +
Sbjct: 304 LKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEA 363

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
           +V+P+ ITFV +L AC+H G+V+E   +F  M   ++++P V+HYTC+VD+LG +GR  E
Sbjct: 364 QVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKE 423

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  +I+ M V+ D G+WGALL  C+IHKNV+LAE+A   L+E +P++ G+YVLLSN+YA 
Sbjct: 424 ASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQ 483

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           +G+W++ A++R LMT R LKKI   +WIE++ K H F VGD++HP+S+EIY  L  L   
Sbjct: 484 SGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGL 543

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +   GY+PDT    H+V+++ K   +  HSE+LAIAFGLI+TP GT + + KNLRVC DC
Sbjct: 544 ISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDC 603

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H  IK +S I +R II+RD NR+HHF  G CSC+D+W
Sbjct: 604 HVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 146/331 (44%), Gaps = 62/331 (18%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR- 222
           ++R+C   + +  GR +H  +L SGL +D  +   LVD+YA C ++  AR+LFD+MP + 
Sbjct: 69  ILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQG 128

Query: 223 DLVTWTVMI---------------------------------------------GANKFL 237
           ++  W V+I                                             GA + +
Sbjct: 129 NVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREV 188

Query: 238 LDVILGTA----------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
            D ++ T+          +IDMYAKCG +D A  +FD    ++ + W++MIAA G +G+ 
Sbjct: 189 HDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRP 248

Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYT 346
            +AL L   M +  + P  +T VS + A +  G +  G  L    W   F  +  +K  T
Sbjct: 249 AEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLK--T 306

Query: 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406
            ++D+  ++G +  A  L + +   ++   W A++    +H + D A    + +      
Sbjct: 307 SLLDMYAKSGWVTVARVLFDQL-FHRELISWNAMICGFGMHGHADHACELFRRMRNEAQV 365

Query: 407 NPGHYVLLSNVYA--NAGRWQDVAKIRDLMT 435
            P H   +  + A  + G  Q+  ++ DLM 
Sbjct: 366 MPDHITFVGVLSACNHGGMVQEAKEVFDLMV 396


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/520 (37%), Positives = 300/520 (57%), Gaps = 52/520 (10%)

Query: 63  FISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
           F S   +C ++  IR    +HA  V  G  +N  V   L+ +Y+    L  A  LF+ ++
Sbjct: 108 FTSVAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIR 167

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
           ++  V+W+ M+ G+ +        E +RE    G   DS T    + AC     + +GR 
Sbjct: 168 DKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGR- 226

Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239
                      +D+ + +  ++M                                    +
Sbjct: 227 ----------QVDKLIVSERMEM------------------------------------N 240

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
           V+LG A+++MYA+CG ++ ARE F+ ++++NV++W++MIA YG HG G +A+ LF +M  
Sbjct: 241 VVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQ 300

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
               PN +TFV++L AC+H GLV EG   F+SM   + + P V+HY  MVD+ GRAG LD
Sbjct: 301 QGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLD 360

Query: 360 EALKLI-ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418
           +A++ I +S+  E    +W A+LGAC++HK+ +L    A+ L+  +P++P H VLLSN+Y
Sbjct: 361 DAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIALEPESPSHRVLLSNLY 420

Query: 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLS 478
           A +G+   V K+RD M +RRLKK  G++ IE+    H F +G+ +HP++ EIY+ L  L 
Sbjct: 421 ALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEKSHPKTSEIYQYLEKLI 480

Query: 479 EKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPE-GTHIRIMKNLRVC 537
           EK+   GY+P T+  LH+++EE +   L  H EKLA+AFGL+ T    T IRI+KNLR+C
Sbjct: 481 EKITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTTPIRIIKNLRIC 540

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCH  IK++SA+  R IIVRD +RFHHF+ G CSC++YW
Sbjct: 541 EDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 322/557 (57%), Gaps = 30/557 (5%)

Query: 44  VPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQ-IVAGGTLTNLIVANKLLYIY 102
           VP  + PD +FT S   K F    L    + + ++ H Q +V G  ++N+ V + L+ +Y
Sbjct: 169 VPDGILPD-EFTFSSVFKAFSDLGL----VHEGQRAHGQSVVLGVGVSNVFVGSALVDMY 223

Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
           A    + DA  + + +  +D V ++ ++ G+S   +     + FR   + G++ + YTL 
Sbjct: 224 AKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLS 283

Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK---VIDDARQLFDQM 219
            V+  C + +D+  GRLIH +++K+GL+      + +V +    +    +   RQ+    
Sbjct: 284 SVLVCCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSS 343

Query: 220 PTRDLVTWTVMIGA-----------------NKFLLDV--ILGTAVIDMYAKCGSIDSAR 260
            T +  T + ++ A                  KF LD+   +G A+ID Y KCGS + AR
Sbjct: 344 ITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIAR 403

Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F+ + + +V+S ++MI +Y  +G G +AL LF  M  + + PN +T++ +L AC++ G
Sbjct: 404 SVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAG 463

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
           L+EEG  +FSS  +   +     HY CMVDLLGRAGRL EA  LI  +++  D  +W  L
Sbjct: 464 LLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNIS-DVVIWRTL 522

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           L ACRIH +V++A+     +++  P++ G +VLLSN+YA+ G W  V +++  M   RLK
Sbjct: 523 LSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLK 582

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
           K P  +W++VE +IH F  GD +HP   +I   L  L EK++  GY+PDT F L D+DEE
Sbjct: 583 KNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEE 642

Query: 501 VKVGNLYSHSEKLAIAFGLI-ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
            K+ +LY HSEKLA+AF L  +  + T IRI+KNLRVCGDCH+++K VS I  R II RD
Sbjct: 643 KKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARD 702

Query: 560 ANRFHHFEGGACSCRDY 576
             RFHHF  G CSC DY
Sbjct: 703 VKRFHHFRNGLCSCGDY 719



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 6/212 (2%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
           LG  +ID Y KCGS+  AR++FD +  +++++W++MIA+Y  +G+ K+A+D++  M+   
Sbjct: 113 LGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           +LP+  TF S+  A S  GLV EG R             +V   + +VD+  + G++ +A
Sbjct: 173 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA 232

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
            +L+    V KD  L+ AL+     H   D   +     + ++      Y  LS+V    
Sbjct: 233 -RLVSDQVVGKDVVLFTALIVGYS-HHGEDGESLQVFRNMTKKGIEANEYT-LSSVLVCC 289

Query: 422 GRWQDVAK---IRDLMTRRRLKKIPGWTWIEV 450
           G  +D+     I  L+ +  L+    WT + V
Sbjct: 290 GNLEDLTSGRLIHGLIVKAGLESAVTWTSVIV 321



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 113/279 (40%), Gaps = 62/279 (22%)

Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
           +I+ C   K I     I    LK G      +   L+D Y KC  +  AR++FD++P R 
Sbjct: 84  LIQQCIGIKSITDITKIQSHALKRGFH--HSLGNKLIDAYLKCGSVVYARKVFDEVPHRH 141

Query: 224 LVTWTVMI------GANKFLLDV------------------------------------- 240
           +V W  MI      G +K  +D+                                     
Sbjct: 142 IVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHG 201

Query: 241 ------------ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
                        +G+A++DMYAK G +  AR + D++  K+V+ ++A+I  Y +HG+  
Sbjct: 202 QSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDG 261

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           ++L +F  M    +  N  T  S+L  C +   +  G RL   +     +   V   + +
Sbjct: 262 ESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSG-RLIHGLIVKAGLESAVTWTSVI 320

Query: 349 VDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
           V L+ + GR + AL     M   S+  +     ++L AC
Sbjct: 321 VGLV-QNGREEIALLKFRQMLRSSITPNSFTLSSVLRAC 358


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 301/561 (53%), Gaps = 62/561 (11%)

Query: 78   QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
            Q+H   +  G    + V N L+ +Y+    + +A  +F  M  R  +SW+ M+ G+    
Sbjct: 491  QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAG 550

Query: 138  DFINCFETF--REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI--DQ 193
                   TF   +  +   + D +TL  +++AC     I  G+ IH  +++SG       
Sbjct: 551  YGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 610

Query: 194  FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------------- 231
             +  +LVD+Y KC  +  AR+ FDQ+  + +++W+ +I                      
Sbjct: 611  TITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQEL 670

Query: 232  --GANKFLLDVILG------------------------------TAVIDMYAKCGSIDSA 259
                + F+L  I+G                               +++DMY KCG +D A
Sbjct: 671  SSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEA 730

Query: 260  REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
             + F  M+ K+VISW+ MI  YG HG GKKA+ +F  ML   + P+ + ++++L ACSH+
Sbjct: 731  EKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHS 790

Query: 320  GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
            G+++EG  LFS + +   ++P V+HY C+VDLLGRAGRL EA  L+++M ++ + G+W  
Sbjct: 791  GMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQT 850

Query: 380  LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
            LL  CR+H +++L +   K LL    +NP +YV++SN+Y  AG W +    R+L + + L
Sbjct: 851  LLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGL 910

Query: 440  KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL-ELAGYIPDTNFELHDVD 498
            +K  G +W+E+E ++H F  G+ +HP +  I   L  +  +L E  GY+     ELHD+D
Sbjct: 911  QKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGLKHELHDID 970

Query: 499  EEVKVGNLYSHSEKLAIAFGLIA---TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
            +E K  NL +HSEKLAI   L       +G  IR+ KNLRVC DCH FIK +S IT+   
Sbjct: 971  DESKEENLRAHSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAY 1030

Query: 556  IVRDANRFHHFEGGACSCRDY 576
            +VRDA RFH FE G CSC DY
Sbjct: 1031 VVRDAVRFHSFEDGCCSCGDY 1051



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 125/298 (41%), Gaps = 51/298 (17%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G+  NLI +N L+ +Y   +    A+ +F+ M ER+ VSW+ ++ G     D       F
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
            E  R G+  + +T    ++AC     +  G  IH   LK G ++   V  +LVDMY+KC
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
             I++A ++F  M  R L++W  M                                    
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAM------------------------------------ 542

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTGLVEE 324
                      IA Y + G G +AL  F MM  +++   P+  T  SLL ACS TG++  
Sbjct: 543 -----------IAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYA 591

Query: 325 GLRLFSSMWDDFAVRPDVKHYT-CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           G ++   +       P     T  +VDL  + G L  A K  + +  EK    W +L+
Sbjct: 592 GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK-EKTMISWSSLI 648



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 93/181 (51%), Gaps = 7/181 (3%)

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
           L++I    +IDMY KC     A ++FD M ++NV+SW+A+++ +  +G    +L LF  M
Sbjct: 402 LNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEM 461

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAG 356
               + PN  TF + L AC     +E+GL++    +   F +  +V +   +VD+  + G
Sbjct: 462 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN--SLVDMYSKCG 519

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE--RQPQNPGHYVLL 414
           R++EA K+   M V +    W A++ A  +H       +A   +++  +  + P  + L 
Sbjct: 520 RINEAEKVFRWM-VGRSLISWNAMI-AGYVHAGYGSRALATFGMMQEAKIKERPDEFTLT 577

Query: 415 S 415
           S
Sbjct: 578 S 578


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 310/574 (54%), Gaps = 56/574 (9%)

Query: 58   VDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
            VD    +S L++  NI  +   R +H   V       ++ +N LL +Y+    L  A  +
Sbjct: 569  VDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 628

Query: 115  FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
            F  M +   VSW+  +  + +   + +    F E    G++ D YT+  ++ AC     +
Sbjct: 629  FVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 688

Query: 175  VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------------ 222
              GR +H  V+K+G+  +  V  AL++MYAKC  +++AR +F ++P +            
Sbjct: 689  DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 748

Query: 223  ----------------------DLVTWTVMIGA-------------------NKFLLDVI 241
                                  D +T   ++ A                     +  D+ 
Sbjct: 749  SQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLH 808

Query: 242  LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
            +  A++DMYAKCG +  A+ +FD + +K++ISW+ MIA YG HG G +A+  F  M  + 
Sbjct: 809  VACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAG 868

Query: 302  VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
            + P+  +F  +L ACSH+GL+ EG + F+SM ++  V P ++HY C+VDLL R G L +A
Sbjct: 869  IEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKA 928

Query: 362  LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             K IESM ++ D  +WG LL  CRIH +V LAE  A+ + E +P N  +YV+L+NVYA A
Sbjct: 929  YKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEA 988

Query: 422  GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
             +W++V K+R  M +R  K+ PG +WIEV  K + F  G+S HPQ++ I  +L  L+ ++
Sbjct: 989  EKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQM 1048

Query: 482  ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
            +   Y     + L + D+  K      HSEK A+AFG++  P G  +R+ KN RVCGDCH
Sbjct: 1049 QNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCH 1108

Query: 542  SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
               K +S  T+R I++RD+NRFHHF+ G CSCRD
Sbjct: 1109 EMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 168/384 (43%), Gaps = 59/384 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           ++VH+ I++ G   +  +  KL+++Y     L     +F+ +       W++++  ++K+
Sbjct: 389 KRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKI 448

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
            +F      F++  + G+  + YT   V++       +   + +H  VLK G   +  V 
Sbjct: 449 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 508

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-----------GANKFLLDVILGTA 245
            +L+  Y K   ++ A  LFD++   D+V+W  MI           G   F+  +ILG  
Sbjct: 509 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568

Query: 246 V-------------------------------------------IDMYAKCGSIDSAREI 262
           V                                           +DMY+KCG+++ A E+
Sbjct: 569 VDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 628

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F +M    ++SW++ IAAY   G    A+ LF  M S  V P+  T  S+++AC+ +  +
Sbjct: 629 FVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 688

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G  + S +  +  +  ++     ++++  + G ++EA +L+ S    KD   W  ++G
Sbjct: 689 DKGRDVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEA-RLVFSKIPVKDIVSWNTMIG 746

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQ 406
               +    L   A +  L+ Q Q
Sbjct: 747 G---YSQNSLPNEALELFLDMQKQ 767



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 158/397 (39%), Gaps = 88/397 (22%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           + ++VH  ++  G  +N  V N L+  Y     +  AH LF+ + E D VSW+ M+ G  
Sbjct: 488 ECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCV 547

Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
                 N  E F + +  G+++D  TL  V+ A  +  ++ +GR +H   +K+    +  
Sbjct: 548 VNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVV 607

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------NK 235
               L+DMY+KC  ++ A ++F +M    +V+WT  I A                     
Sbjct: 608 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 236 FLLDVILGTAVIDMYAKCGSIDSARE---------------------------------- 261
              D+   T+++   A   S+D  R+                                  
Sbjct: 668 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 727

Query: 262 -IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
            +F ++  K+++SW+ MI  Y  +    +AL+LF + +  +  P+ IT   +L AC+   
Sbjct: 728 LVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELF-LDMQKQFKPDDITMACVLPACAGLA 786

Query: 321 LVEE------------------------------GLRLFSSMWDDFAVRPDVKHYTCMVD 350
            +++                              GL + + +  D   + D+  +T M+ 
Sbjct: 787 ALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 846

Query: 351 LLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
             G  G  +EA+     M    +E DE  +  +L AC
Sbjct: 847 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNAC 883



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 120/293 (40%), Gaps = 57/293 (19%)

Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
           +  F ++ D  N  E   +     + L+SY    V++ C ++K +  G+ +H +++ +G+
Sbjct: 343 INKFCEMGDLRNAIELLTKSKSYELGLNSYCS--VLQLCAEKKSLEDGKRVHSVIISNGI 400

Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------------- 232
            ID+ + A LV MY  C  +   R++FD++    +  W +++                  
Sbjct: 401 SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKK 460

Query: 233 -------ANKFLLDVIL--------------------------GTAVID----MYAKCGS 255
                   N +    +L                           TAV++     Y K G 
Sbjct: 461 MQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGG 520

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           ++SA  +FD + + +V+SW++MI     +G     L++F  ML   V  +  T VS+L A
Sbjct: 521 VESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVA 580

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
            ++ G +  G R             +V     ++D+  + G L+ A ++   M
Sbjct: 581 WANIGNLSLG-RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 205/560 (36%), Positives = 307/560 (54%), Gaps = 61/560 (10%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLY--IYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
            + ++H  I+      + +    LL   + A  ++L+ A  +F+ +   D+++++ ++  
Sbjct: 3   NVYRLHCYIIKSSKQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRS 62

Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
            S+     + F  F      G+ LD++T PFV++AC     + +   +H +++K GLD D
Sbjct: 63  HSRFFPSHSLFYFF-SMRSNGIPLDNFTFPFVLKAC---SRLQINLHLHSLIVKYGLDSD 118

Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTR------------------------------ 222
            FV  AL+ +Y  C  ++ A ++FD+M  R                              
Sbjct: 119 IFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQL 178

Query: 223 ------DLVTWTVMIGANKFLLD-------------------VILGTAVIDMYAKCGSID 257
                 D VT   +I A   L D                   V LGTA+IDM+++CGSID
Sbjct: 179 EDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSID 238

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
            +  +F++M  +NV++W+A+I   G HG+  +AL +F  M  S V P+ +TF  +L ACS
Sbjct: 239 ESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACS 298

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GLV+EG  +F S+   + + P + HY CMVD+LGRAG L+EA   +E M ++ +  +W
Sbjct: 299 HGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNSIIW 358

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LLGAC  H N+ LAE     + +      G  VLLSNVY  AGRW + A IR  M  +
Sbjct: 359 RTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVLLSNVYGAAGRWVEKASIRSKMREK 418

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
           R+ K PG + I V+  IH+F  GD++HPQSE+I + L ++   L   GY+  T   LHD+
Sbjct: 419 RIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKFLSSIIGDLRNRGYMMQTKNVLHDI 478

Query: 498 DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIV 557
           +EE +  +L  HSEKLA+AF +++  +   IRIMKNLR+C DCHSF+KH+S    R II+
Sbjct: 479 EEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKNLRICYDCHSFMKHISVRFERKIII 538

Query: 558 RDANRFHHFEGGACSCRDYW 577
           RD NRFHHFE G CSC DYW
Sbjct: 539 RDRNRFHHFEKGLCSCHDYW 558


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 297/556 (53%), Gaps = 86/556 (15%)

Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
           L DA  L      R+ +SW+ ++ G+S+        + F   +  G++ D  T+  ++ A
Sbjct: 187 LDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSA 246

Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI------------------ 209
           C   KD+V GR +H +V + G+ +   +  AL+DMYAKC  I                  
Sbjct: 247 CAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQS 306

Query: 210 --------------DDARQLFDQMPTRDLVTWTVM------------------------I 231
                         D AR LFDQM  RDLVT+  +                        +
Sbjct: 307 WNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDL 366

Query: 232 GANKFLL------------------------------DVILGTAVIDMYAKCGSIDSARE 261
            A+ F +                              D+ LGTA++DMY KCG ++ A  
Sbjct: 367 RADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASL 426

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  M  ++V +WSAMIA   ++G GK AL+ F  M      PN +T++++L ACSH+ L
Sbjct: 427 VFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCL 486

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           ++EG   F  M     +RP ++HY CM+DLLGR+G LDEA+ L+ +M ++ +  +W ++L
Sbjct: 487 LDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASIL 546

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
            ACR+HK+ +LA  AA+ LL+ +P     YV L N+Y ++ +W+D ++IR LM  R +KK
Sbjct: 547 SACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKK 606

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
             G++ I V  ++H+F V D THPQ  EI  M+  ++ +L+  GY P T+    DVDEE 
Sbjct: 607 AAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEE 666

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   L +HSEK+AIAFGLI+      + I+KNLRVC DCHS IK +S I  R IIVRD +
Sbjct: 667 KEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRS 726

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G CSC D+W
Sbjct: 727 RFHHFRDGTCSCNDFW 742



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 151/332 (45%), Gaps = 27/332 (8%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD------AHALFNGMKERDSV 124
           R++ Q  ++HA +VA G L +   A+ LL         TD      A  LF+ M     +
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFL 69

Query: 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDI 183
             + +   F   +   +    +R   R G+  D++T  F+ + C R R  +++ +++H  
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAA 129

Query: 184 VLKSGL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
             ++ L      V   ++ MY +  +  DAR+ FD +P +D V WT              
Sbjct: 130 CFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTT------------- 176

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
              VI   AK G +D A  +      +NVISW+ +I+ Y   G+  +A+D F  MLS  +
Sbjct: 177 ---VISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGI 233

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            P+ +T + LL AC+    +  G R    +  +  +    K    ++D+  + G +  A 
Sbjct: 234 EPDEVTVIGLLSACAQLKDLVFG-RSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAW 292

Query: 363 KLIESMSVEKDEGLWGALL-GACRIHKNVDLA 393
           ++ +++   +    W A++ G C++  +VD+A
Sbjct: 293 EVFDALGRGRRPQSWNAMIDGYCKL-GHVDVA 323


>gi|296082479|emb|CBI21484.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 210/606 (34%), Positives = 319/606 (52%), Gaps = 90/606 (14%)

Query: 46  MQMGPDCQFTRSVDP-KFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL----- 99
           M+       T   DP   F+   L  ++ F  + +HA+I+  G    + + N L+     
Sbjct: 1   METSSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAK 60

Query: 100 --YIYALHKA------------------------LTDAHALFNGMKERDSVSWSVMVGGF 133
             +IY  H+                         L +AH +F  M E DSVSW+ M+ G+
Sbjct: 61  TGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGY 120

Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
           +++  F N    FRE +   +    +TL  V+ +C   + + +GR +H  V+K GL    
Sbjct: 121 NQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYI 180

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253
            V  +L++MYAK      A+ +FD+M  +   T+T                A++D Y K 
Sbjct: 181 SVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSTFT----------------ALLDGYVKL 224

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G I+ AR IFD +R ++V++W+AMI  Y  +G  + A++LF  M+     PN  T  ++L
Sbjct: 225 GDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATML 284

Query: 314 YACSHTGLVEEGLRLFSS-------------------------------MWDDFAVRPDV 342
              S    ++ G ++ +S                               +++    + D 
Sbjct: 285 SVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDT 344

Query: 343 KHYTCMVDLLGRAGRLDEALKL-----------IESMSVEKDEGLWGALLGACRIHKNVD 391
             +T M+  L + G  +EAL L           IE+M +E D   WG+LL +C++HKNV+
Sbjct: 345 ITWTSMIIALAQHGLGEEALTLFERMLENAHAFIENMPIEPDVIAWGSLLASCKVHKNVE 404

Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
           LAE+AA+ LL  +P+N G Y  L+NVY+  G+W++ A IR  M  + +KK  G++W++++
Sbjct: 405 LAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIK 464

Query: 452 NKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
           NK+H F V D  HPQ + IY M+  + ++++  G++PDT   LHD++EE+K   L  HSE
Sbjct: 465 NKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSE 524

Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
           KLAIAFGLI TPE T +RIMKNLRVC DCHS IK +S +  R IIVRDA RFHHF+ G C
Sbjct: 525 KLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLC 584

Query: 572 SCRDYW 577
           SCRDYW
Sbjct: 585 SCRDYW 590


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 227/656 (34%), Positives = 342/656 (52%), Gaps = 119/656 (18%)

Query: 19  FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR-NIFQIR 77
           F SS+T  +I++        P NP +P+ +          +P+ F S LL+ R  +  ++
Sbjct: 51  FCSSNTFPSISI--------PTNP-IPIDLP---------NPQTF-SLLLNQRPKLSPLQ 91

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS--WSVMVGGFSK 135
           Q+HAQ+V     +N  +   L++ Y   K   +A  LF+           W+VM+  +SK
Sbjct: 92  QIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSK 151

Query: 136 VADFINCFETFREFIRC-----GMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +    N  E    F+R       MQ+  D YT  FVI +C  +  ++ G ++H +V+KSG
Sbjct: 152 IR---NSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSG 208

Query: 189 LDIDQFVCAALVDM-------------------------------YAKCKVIDDARQLFD 217
            + + +V  ++++M                               YAK   +D A +LF+
Sbjct: 209 FESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFN 268

Query: 218 QMPTRDLVTWTVM-------------------------IGANKFLLDVILG--------- 243
            MP R+ V+W VM                         +  N+ +L  +L          
Sbjct: 269 MMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALD 328

Query: 244 ---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                                TA+IDMYAKCG ID A  +F+ + +++V+S+++MI+   
Sbjct: 329 QGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLS 388

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
           YHG GK AL +F  ML   V+PN IT + +L  CSH+GLVEEG  + ++M   + + P +
Sbjct: 389 YHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKI 448

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY C +DLLGRAG L+ AL+++++M +E D  +W ALL A RIH NV+L E     + +
Sbjct: 449 EHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIGQ 508

Query: 403 -RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
            +   + G  VLLSN+YA+ GRW+ V ++R LM  RR +  PG +WIEV   +H+F V D
Sbjct: 509 LKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVAD 568

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
             HPQ  EI   L  + ++L   GY  +T     D++EE K   +  HSEKLAIAFGL++
Sbjct: 569 QLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLMS 628

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T  GT IRI+KNLR C DCHS +K +S +  R I+VRD +RFH F  G CSC+D+W
Sbjct: 629 TEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/584 (34%), Positives = 316/584 (54%), Gaps = 59/584 (10%)

Query: 53  QFTRSVDPKF--FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110
            F  S+D      I+++ SC +I   R +H ++V   +  +  + ++L+  Y        
Sbjct: 25  SFVHSLDANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVC 84

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI--RCGMQLDSYTLPFVIRAC 168
           A  LF+ M ERD VSW+ ++ G+S       CFE     +    G + +  T   +I AC
Sbjct: 85  AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-------CKVIDDAR-------- 213
                   GR IH +V+K G+  +  V  A ++ Y K       CK+ +D          
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204

Query: 214 -----QLFDQMPTRDLVTWTV----------------------------------MIGAN 234
                 L + +  + L  + +                                  +I   
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264

Query: 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF 294
            F  +  + TA++D+Y+K G ++ +  +F  +   + ++W+AM+AAY  HG G+ A+  F
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324

Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
            +M+   + P+ +TF  LL ACSH+GLVEEG   F +M   + + P + HY+CMVDLLGR
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384

Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           +G L +A  LI+ M +E   G+WGALLGACR++K+  L   AA+ L E +P++  +YV+L
Sbjct: 385 SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
           SN+Y+ +G W+D ++IR+LM ++ L +  G ++IE  NKIH+F VGD +HP+SE+I + L
Sbjct: 445 SNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKL 504

Query: 475 VTLSEKLELA-GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
             + +K++   GY   T F LHDV E+VK   +  HSEK+A+AFGL+       I I KN
Sbjct: 505 KEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKN 564

Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           LR+CGDCH   K +S I +R II+RD+ RFHHF  G+CSC DYW
Sbjct: 565 LRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 284/491 (57%), Gaps = 61/491 (12%)

Query: 146 FREFIRCGMQLDSYTLPFVIRACR---DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
           F   +R  +  + +T PF+++AC       D+  G   H   LK G   DQ+V   L+ M
Sbjct: 114 FPLMLRGAVVPNKFTFPFLLKACAALPGSPDV--GLQAHAAALKFGFATDQYVSNTLIHM 171

Query: 203 YA--KCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------ANKFLLD-- 239
           Y+      + DAR +FD+MP    VTW+ MIG                   AN    D  
Sbjct: 172 YSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEV 231

Query: 240 ---------------------------------VILGTAVIDMYAKCGSIDSAREIFDRM 266
                                            V L  A+ID  AKCG +D A  +F+ M
Sbjct: 232 TVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
           +Q++V+SW+++I A    G+GK+A+ +F  M  + V P+ + F+ +L ACSH G+V+EG 
Sbjct: 292 QQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGC 351

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
             F +M  ++ + P ++HY CMVD+ GRAG ++ A++ + +M ++ +  +W +L+ ACR 
Sbjct: 352 GYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRA 411

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           H  ++L E   +SLL   P +  +Y++LSNV+A   RW++ ++IR  M++R +KK+PG +
Sbjct: 412 HGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCS 471

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
            +E++ ++H+F  GD +HPQ ++IYRM+  ++ +L   G+I  T+  L D+DEE K G L
Sbjct: 472 IVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGAL 531

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLAIAF L+ TP GT +R++KNLRVC DCH+ IK +S + RR I+VRD +RFH F
Sbjct: 532 QWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRF 591

Query: 567 EGGACSCRDYW 577
           + G+CSC+D+W
Sbjct: 592 KDGSCSCKDFW 602



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   ++ + N L+   A    +  A A+F GM++R  VSW+ ++   +           F
Sbjct: 260 GIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVF 319

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV-LKSGLD--IDQFVCAALVDMY 203
            E    G+  D      V+ AC     +  G    D + ++ G++  I+ + C  +VDM+
Sbjct: 320 EEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGC--MVDMF 377

Query: 204 AKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAV 246
            +  +++ A +    MP + + V W  ++ A +    + LG ++
Sbjct: 378 GRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESI 421


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 209/580 (36%), Positives = 309/580 (53%), Gaps = 72/580 (12%)

Query: 63  FISSLLSCRN-----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNG 117
           F+S   +C +       Q++  HA +   G  ++++VA  L+  YA    +  A   F  
Sbjct: 233 FVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAE 292

Query: 118 MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           M ER++VSW+ M+  F+++   +   ETF   +  G+     TL   +  C   +D+ + 
Sbjct: 293 MPERNAVSWTSMIAAFTQIGHLL-AVETFHAMLLEGVVPTRSTLFAALEGC---EDLRVA 348

Query: 178 RLIHDIVLKSGL---------------------------------DIDQFVCAALVDMYA 204
           RL+  I  + G+                                 + D  +  A++ +YA
Sbjct: 349 RLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYA 408

Query: 205 KCKVIDDARQLF-------DQMPTRDLVTWTVMIGANKFLL------------------- 238
           +C+   D R  F       ++  + D + +   + A   L                    
Sbjct: 409 QCR---DRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLD 465

Query: 239 -DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            DV LG A++ MY +CGS+  AR+ FD M  ++ ISW+AM++A   HG+ +   DLF  M
Sbjct: 466 RDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAM 525

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           L       RI F++LL AC+H GLV+ G   FS+M  D  V P  +HY CMVDLLGR GR
Sbjct: 526 LQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLLGRKGR 585

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           L +A  ++++M V  D   W AL+GACRI+ + +    AA+ +LE +  +   YV L N+
Sbjct: 586 LADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYVALCNI 645

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           Y+ AGRW D A +R +M    L+KIPG + IE+ +K+H+F V D +HPQSE IY  L  +
Sbjct: 646 YSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYAELERV 705

Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVC 537
              +E AGY   T   LHDV+EE K   L  HSEKLAIAFG+++TP+G+ +R++KNLRVC
Sbjct: 706 MGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIKNLRVC 765

Query: 538 GDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            DCH+  K +S +  R I+VRD  RFHHF+ GACSC DYW
Sbjct: 766 VDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 165/393 (41%), Gaps = 59/393 (15%)

Query: 57  SVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA 113
           ++D   F+S L +C +   +   R +H   V  G     IVA+ L+ +Y    +L DA+A
Sbjct: 125 ALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANA 184

Query: 114 LFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
           LF  ++   D V W+ M+   S+        E F   ++ G+  D  T   V +AC    
Sbjct: 185 LFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSP 244

Query: 173 DIVMGRL--IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
            +   ++   H  + ++GL  D  V  ALV+ YA+C  ID AR+ F +MP R+ V+WT M
Sbjct: 245 SLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSM 304

Query: 231 IGA-------------NKFLL-------------------------------------DV 240
           I A             +  LL                                     DV
Sbjct: 305 IAAFTQIGHLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDV 364

Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQK--NVISWSAMIAAYGYHGQGKKALDLFPMML 298
            + T ++  YA+C   + A  +F    +   +    +AMIA Y      +    L+   +
Sbjct: 365 AIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAI 424

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              + P+RI +++ L AC+    + EG ++ + +  D  +  DV     +V + G+ G L
Sbjct: 425 ERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSL 484

Query: 359 DEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
            +A    + M   +DE  W A+L A   H  V+
Sbjct: 485 RDARDAFDGMPA-RDEISWNAMLSASAQHGRVE 516



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 141/345 (40%), Gaps = 66/345 (19%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
           +A+ L+Y+Y    +L  A  +F+ +  +  V W+V++  +            F   ++ G
Sbjct: 64  LASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQEG 123

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           + LD+     V+ AC   + +  GRLIH   +++GL + + V +ALV MY +C  + DA 
Sbjct: 124 IALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDAN 183

Query: 214 QLFDQMPTR-DLVTWTVMIGANK-----------FLLDVILG-----TAVIDMYAKCGSI 256
            LF  +    D+V W  MI AN            F   + LG        + ++  C S 
Sbjct: 184 ALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSS 243

Query: 257 DSAR----------------------------------------EIFDRMRQKNVISWSA 276
            S R                                        + F  M ++N +SW++
Sbjct: 244 PSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTS 303

Query: 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
           MIAA+   G    A++ F  ML   V+P R T  + L  C    +     RL  ++  + 
Sbjct: 304 MIAAFTQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGCEDLRVA----RLVEAIAQEI 358

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
            V  DV   T +V    R    ++A+++  +    ++EG W A L
Sbjct: 359 GVVTDVAIVTDLVMAYARCDGQEDAIRVFSA----REEGEWDAAL 399



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
           D  L ++++ MY +CGS++SA ++F ++  K+++ W+ +I+AY   G    A+ LF  +L
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 299 SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358
              +  + I FVS+L ACS    +  G RL      +  +       + +V + GR G L
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAG-RLIHRCAVEAGLGLQEIVASALVSMYGRCGSL 179

Query: 359 DEALKLIESMSVEKDEGLWGALLGA 383
            +A  L   +    D  LW A++ A
Sbjct: 180 RDANALFGHLERHLDVVLWNAMITA 204



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 32/206 (15%)

Query: 57  SVDPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLT-NLIVANKLLYIYALHKALTDAH 112
           S D   +I++L +C ++  +   RQ+HA + A   L  ++ + N ++ +Y    +L DA 
Sbjct: 429 SPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDAR 488

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
             F+GM  RD +SW+ M+   ++     +C + FR  ++ G   +      ++ AC    
Sbjct: 489 DAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSAC---- 544

Query: 173 DIVMGRLIHDIVLKSGLD--------------IDQFVCAALVDMYAKCKVIDDARQLFDQ 218
                   H  ++K+G +               + + C  +VD+  +   + DA  +   
Sbjct: 545 -------AHAGLVKAGCEHFSAMTGDHGVVPATEHYGC--MVDLLGRKGRLADAHGIVQA 595

Query: 219 MPT-RDLVTWTVMIGANKFLLDVILG 243
           MP   D  TW  ++GA +   D   G
Sbjct: 596 MPVPPDAATWMALMGACRIYGDTERG 621


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/556 (35%), Positives = 307/556 (55%), Gaps = 87/556 (15%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           +++    V  G  +NL V    +++++L   +  AH +F+     + V+W++M+ G+++V
Sbjct: 127 KELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRV 186

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
             F                     +  V+ AC   KD+  G+            I +++ 
Sbjct: 187 KQF-----------------KISKMLLVLSACSKLKDLEWGK-----------HIFKYIN 218

Query: 197 AALVD-MYAKCKVIDDARQLFDQMPTRDLVTWTVM----------IGA------------ 233
             +V+ M+A C  +D+A+ +FD M TRD+V+WT M          IGA            
Sbjct: 219 GGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNV 278

Query: 234 --NKFLL------------------------------DVILGTAVIDMYAKCGSIDSARE 261
             ++F +                              D  +G A++DMY KCG++  A++
Sbjct: 279 KPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKK 338

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           +F  M QK+  +W+ MI     +G G++AL +F  M+ + V P+ IT++ +L AC    +
Sbjct: 339 VFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----M 394

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           V++G   F++M     ++P V HY CMVDLLG  G L+EAL++I +M V+ +  +WG+ L
Sbjct: 395 VDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPL 454

Query: 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441
           GACR+HKNV LA+MAAK +LE +P+N   YVLL N+YA + +W+++ ++R LM  R +KK
Sbjct: 455 GACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKK 514

Query: 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEV 501
            PG + +E+   +++F  GD +HPQS+EIY  L  + + L  AGY PDT+    D+ EE 
Sbjct: 515 TPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEED 574

Query: 502 KVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDAN 561
           K   LY HSEKLAIA+ LI++  G  IRI+KNLR+C DCH   K VS    R +IV+D  
Sbjct: 575 KETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKT 634

Query: 562 RFHHFEGGACSCRDYW 577
           RFHHF  G+CSC ++W
Sbjct: 635 RFHHFRHGSCSCNNFW 650



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 166/347 (47%), Gaps = 31/347 (8%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA--LTDAHALFNGMKER 121
           IS L  C++++Q++Q+H+  +  G  ++ +  N+++     H++  +  AH +F+ +   
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHP 70

Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
               W+ M+ G+SK++   N    +   +   ++ D +T PF ++       +  G+ + 
Sbjct: 71  SMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELL 130

Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------- 233
           +  +K G D + FV  A + M++ C ++D A ++FD     ++VTW +M+          
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFK 190

Query: 234 -------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
                               K +   I G  V  M+A CG +D A+ +FD M+ ++V+SW
Sbjct: 191 ISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSW 250

Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
           +AMI  Y        AL LF  M  S V P+  T VS+L AC+  G +E G     +  D
Sbjct: 251 TAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELG-EWVKTCID 309

Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             + + D      +VD+  + G + +A K+ + M  +KD+  W  ++
Sbjct: 310 KNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEM-YQKDKFTWTTMI 355


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 191/497 (38%), Positives = 283/497 (56%), Gaps = 74/497 (14%)

Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
           ++ D +    +++AC +   I  GR +H   + S    D+ V ++LVDMYAKC +++ A+
Sbjct: 38  LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 97

Query: 214 QLFDQ-------------------------------MPTRDLVTWTVMI--------GAN 234
            +FD                                +P ++L +WT +I        G  
Sbjct: 98  AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLE 157

Query: 235 KF------------LLDVIL---------------------GTAVIDMYAKCGSIDSARE 261
            F            +LD ++                     G A+IDMYAKC  + +A++
Sbjct: 158 AFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKD 217

Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
           IF RMR ++V+SW+++I     HGQ +KAL L+  M+S  V PN +TFV L+YACSH G 
Sbjct: 218 IFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGF 277

Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
           VE+G  LF SM  D+ +RP ++HYTC++DLLGR+G LDEA  LI +M    DE  W ALL
Sbjct: 278 VEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALL 337

Query: 382 GACRIHKNVDLAEMAAKSLLER-QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
            AC+      +    A  L+   + ++P  Y+LLSN+YA+A  W  V++ R  +    ++
Sbjct: 338 SACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVR 397

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDE 499
           K PG + +EV  +   F  G+++HP  E+I+R+L  L E++ +  GY+PDT++ LHD+DE
Sbjct: 398 KDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDE 457

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           + K   L+ HSE+ A+A+GL+    GT IRI+KNLRVCGDCH  +KH+S IT R IIVRD
Sbjct: 458 QEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRD 517

Query: 560 ANRFHHFEGGACSCRDY 576
           A R+HHF+GG CSC D+
Sbjct: 518 ATRYHHFKGGKCSCNDF 534


>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
 gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
          Length = 595

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/521 (37%), Positives = 284/521 (54%), Gaps = 53/521 (10%)

Query: 62  FFISSLLSCR-NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           F ++ LL  R  +   RQ+HA +VA G L + ++A  L+  YA       A  LF  M  
Sbjct: 123 FTLAILLKPRCALAHARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLFGEMPA 182

Query: 121 RDSVSWSVMVGGFSK---VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
           RD+V+W+V++   ++     D +  FE  R                             G
Sbjct: 183 RDAVAWNVLISCCARNRRTKDALKLFEEMR-----------------------------G 213

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
           R        SG + D   C  L+        +D   Q++                 + + 
Sbjct: 214 R-------DSGAEPDDVTCILLLQACTSLGALDFGEQVW------------AYAEEHGYG 254

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
             + +  ++I MY++CG +D A  +F    QK+V++WSAMI+    +G G  A+  F  M
Sbjct: 255 AKLKVRNSLIAMYSRCGCVDKAYRVFCGTPQKSVVTWSAMISGLAANGFGDDAISAFEEM 314

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           + S V P+  TF  +L ACSH+GLV+EG R F  M  ++ ++P+V+HY C+VDL+GRAG 
Sbjct: 315 IRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGL 374

Query: 358 LDEALKLIES-MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           LDEA +L+ + M V  D  +W  LLGACRIH +VDL E    +L+E + Q  G YVLL N
Sbjct: 375 LDEAYELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNLIELKAQQAGDYVLLLN 434

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
            YA  G W  V+++R LM  + ++  PG T +E   ++++F   D  HP+  EIY  L  
Sbjct: 435 TYAAVGEWSKVSEVRKLMQEKGIQTTPGCTTVEHNGEVYEFIADDDAHPRKVEIYEKLNE 494

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           ++++L +AGY+P+ + ELHD+D E K   L  HSEKLAIAF L+ TP+   IR+ KNLRV
Sbjct: 495 INKQLRIAGYVPNVSSELHDLDSEGKESALTYHSEKLAIAFALLVTPQNRPIRLAKNLRV 554

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           C DCH+F K  S I  R++IVRD  RFHHF+GG CSC DYW
Sbjct: 555 CVDCHNFTKVFSGIYNRLVIVRDRTRFHHFQGGKCSCNDYW 595


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 192/515 (37%), Positives = 281/515 (54%), Gaps = 46/515 (8%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           F ++     N+    Q +  +   G   ++ V+N ++  Y   + +  A A+F+GM  R+
Sbjct: 228 FFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRN 287

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
           +VSW  MV  +++       F  +    R G +   + +  V+  C     + +GR +H 
Sbjct: 288 NVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHA 347

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242
           + ++S +D + FV +ALVDMY KC  I+DA Q+F +MP R+LVTW  MIG          
Sbjct: 348 VAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGG--------- 398

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
                  YA  G   +A  +FD+                              M++    
Sbjct: 399 -------YAHIGDAHNALSVFDK------------------------------MIMGQET 421

Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
            PN IT V++L ACS  GL +EG  LF +M   F + P ++HY C+VDLL RAG  + A 
Sbjct: 422 APNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAY 481

Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
           K+I+ M +     +WGALLG C++H   +L  +AA+ L E  PQ+ G++VLLSN+ A+AG
Sbjct: 482 KIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAG 541

Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
           RW +   +R  M    +KK PG +WI  +N +H F   D+TH  + EI  +L  L  +++
Sbjct: 542 RWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQ 601

Query: 483 LAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHS 542
            AGY+PDT + L+D++EE K   ++ HSEKLA+AFGLI  P G  IRIMKNLR+C DCH 
Sbjct: 602 AAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHR 661

Query: 543 FIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             K +S I  R IIVRD N FHHF+   CSC+DYW
Sbjct: 662 AFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 61/357 (17%)

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM-GRLIHD 182
           VS++  + G ++ A  +     F   +R G++ + +T P   +A          G  +H 
Sbjct: 85  VSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHA 144

Query: 183 IVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------- 231
           + L+ G L  D FV  A +DMY K   +  AR+LFD+MP R++V W  ++          
Sbjct: 145 LALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPL 204

Query: 232 ----------GANKF---------------LLDVILGTAVIDMYAKCG------------ 254
                     GA                  + ++ LG       AKCG            
Sbjct: 205 ETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVV 264

Query: 255 -------SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
                   +  AR +FD M  +N +SW +M+ AY  +G  ++A  ++     +   P   
Sbjct: 265 DFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDF 324

Query: 308 TFVSLLYACSHTGLVEEGL-RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
              S+L  C+  GL+   L R   ++     +  ++   + +VD+ G+ G +++A ++  
Sbjct: 325 MVSSVLTTCA--GLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFF 382

Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
            M  +++   W A++G      +   A      ++  Q   P +Y+ L NV     R
Sbjct: 383 EMP-QRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAP-NYITLVNVLTACSR 437


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 309/595 (51%), Gaps = 90/595 (15%)

Query: 73  IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA-LTDAHAL--FNGMKERDSVSWSVM 129
           I QI+Q HA+I+  G   +  + + LL   A+  + L   +AL  +N +      + + M
Sbjct: 44  ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNM 103

Query: 130 VGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
           +  F K     +    +    R  +   + +TL FV++AC +   I  G  +   V+K G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQ--------------------------------LF 216
              D FV  AL+ +Y  C  ++ A+Q                                LF
Sbjct: 164 FVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLF 223

Query: 217 DQMPTRDLVTW-TVMIG------------------------------------------- 232
            +MP +D+++W T++ G                                           
Sbjct: 224 VEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLE 283

Query: 233 --------AN--KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
                   AN  +F +   LGTA++DMYAKCG ID +R +FDRM +K+  SW+ MI    
Sbjct: 284 YGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLA 343

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            HG G++AL LF   L+    P  +TF+ +L ACS  GLV EG   F  M D + + P++
Sbjct: 344 THGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEM 403

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402
           +HY CMVDLL RAG + +A+++I  M    D  LW ++LG+C++H  ++L E     L++
Sbjct: 404 EHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQ 463

Query: 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDS 462
             P + GHYV L+ ++A   +W+DV+K+R LM  R   KI GW+ IE E ++H+F  GD 
Sbjct: 464 MDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDK 523

Query: 463 THPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIAT 522
            H ++ EIY+ML  +  ++  AGY  + +  LHD++EE K   +  HSE+LAIAFGL+ T
Sbjct: 524 EHERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVT 583

Query: 523 PEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            +G  IRI+KNLRVCGDCH   K +S +  R IIVRD +RFHHF+ G CSC+DYW
Sbjct: 584 KDGDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 284/491 (57%), Gaps = 61/491 (12%)

Query: 146 FREFIRCGMQLDSYTLPFVIRACR---DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202
           F   +R  +  + +T PF+++AC       D+  G   H   LK G   DQ+V   L+ M
Sbjct: 114 FPLMLRGAVVPNKFTFPFLLKACAALPGSPDV--GLQAHAAALKFGFATDQYVSNTLIHM 171

Query: 203 YA--KCKVIDDARQLFDQMPTRDLVTWTVMIG-------------------ANKFLLD-- 239
           Y+      + DAR +FD+MP    VTW+ MIG                   AN    D  
Sbjct: 172 YSCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEV 231

Query: 240 ---------------------------------VILGTAVIDMYAKCGSIDSAREIFDRM 266
                                            V L  A+ID  AKCG +D A  +F+ M
Sbjct: 232 TVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
           +Q++V+SW+++I A    G+GK+A+ +F  M  + V P+ + F+ +L ACSH G+V+EG 
Sbjct: 292 QQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGC 351

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
             F +M  ++ + P ++HY CMVD+ GRAG ++ A++ + +M ++ +  +W +L+ ACR 
Sbjct: 352 GYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRA 411

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           H  ++L E   +SLL   P +  +Y++LSNV+A   RW++ ++IR  M++R +KK+PG +
Sbjct: 412 HGRLELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCS 471

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
            +E++ ++H+F  GD +HPQ ++IYRM+  ++ +L   G+I  T+  L D+DEE K G L
Sbjct: 472 IVELDGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGAL 531

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLAIAF L+ TP GT +R++KNLRVC DCH+ IK +S + RR I+VRD +RFH F
Sbjct: 532 QWHSEKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRF 591

Query: 567 EGGACSCRDYW 577
           + G+CSC+D+W
Sbjct: 592 KDGSCSCKDFW 602



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 6/164 (3%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   ++ + N L+   A    +  A A+F GM++R  VSW+ ++   +           F
Sbjct: 260 GIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVF 319

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV-LKSGLD--IDQFVCAALVDMY 203
            E    G+  D      V+ AC     +  G    D + ++ G++  I+ + C  +VDM+
Sbjct: 320 EEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGC--MVDMF 377

Query: 204 AKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAV 246
            +  +++ A +    MP + + V W  ++ A +    + LG ++
Sbjct: 378 GRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESI 421


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 195/485 (40%), Positives = 289/485 (59%), Gaps = 32/485 (6%)

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI--RCGMQLDSYTLPFVIRA 167
           DA+ +F  M+ RD VSW+ M+ GF+    F    + FRE +  +C  + D+ T+  ++ +
Sbjct: 10  DAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCP-KPDAGTMASILPS 68

Query: 168 CRDRK--DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR--- 222
               +  DI + + + D +  +GL        A++ +Y   ++  +A +LF +M      
Sbjct: 69  MGKARVEDIALLKGVFDEMRFTGL----ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIE 124

Query: 223 -DLVTWTVM-------------------IGANKFLLDVILGTAVIDMYAKCGSIDSAREI 262
            D VT   +                   I   +    ++L  A++DMYA CG +  AR++
Sbjct: 125 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDV 184

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           FD M  ++V+SW+++I+AYG HG G++A+DLF  M    + P+ I FV++L ACSH GL+
Sbjct: 185 FDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLL 244

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           + G   F SM  +F + P ++HY CMVDLLGRAG + EA   I  M ++ +E +WGALLG
Sbjct: 245 DMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLG 304

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
           ACRIH N+D+  +AA SLL   P+  G+YVLLSN+YA AGRW DV+ +R +M  + +KK+
Sbjct: 305 ACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKL 364

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +  E+ + +H F +GD++HPQS+ IY+ L  L  ++   GY P+    LHDV+EE K
Sbjct: 365 PGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDK 424

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
            G+L  HSEKLAIAF LI T  GT IRI  NLR C DCH   K +S I  R II++D NR
Sbjct: 425 EGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNR 484

Query: 563 FHHFE 567
            H+ +
Sbjct: 485 IHYMK 489



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 29/214 (13%)

Query: 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPNRI 307
           MYA+CG  D A ++F+ M+ ++V+SW+AMI+ + + G   +A+D+F  +++ +   P+  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
           T  S+L +     +  E + L   ++D+      +  +  M+ +        EA++L   
Sbjct: 61  TMASILPSMGKARV--EDIALLKGVFDEMRFTGLIS-WNAMLAVYTNNEMHVEAVELFMR 117

Query: 368 M---SVEKDEGLWGALLGAC----------RIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
           M    +E D      +L +C          RIH+ +    M +  LLE           L
Sbjct: 118 MQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENA---------L 168

Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
            ++YAN G  ++   + D M  R    +  WT I
Sbjct: 169 MDMYANCGCLKEARDVFDSMGTR---DVVSWTSI 199



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 87/197 (44%), Gaps = 9/197 (4%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           D     + L SC  +  +   +++H  I      +++++ N L+ +YA    L +A  +F
Sbjct: 126 DAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVF 185

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  RD VSW+ ++  + +        + F +    G++ DS     ++ AC     + 
Sbjct: 186 DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLD 245

Query: 176 MGR-LIHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMI 231
           MG+   + +  +  +   ++ + C  +VD+  +   I +A      MP + +   W  ++
Sbjct: 246 MGKHYFYSMTSEFHIAPKLEHYAC--MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALL 303

Query: 232 GANKFLLDVILGTAVID 248
           GA +   ++ +G    D
Sbjct: 304 GACRIHSNMDIGLLAAD 320


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 186/501 (37%), Positives = 286/501 (57%), Gaps = 48/501 (9%)

Query: 78  QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
           Q+HAQ++         V   L+  Y+   +  +A ++F  + ++D VSWS M+  +++  
Sbjct: 377 QIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAG 436

Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRD-RKDIVMGRLIHDIVLKSGLDIDQFVC 196
           D       F +    G++ + +T+   I AC      + +GR  H I +K          
Sbjct: 437 DCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKH--------- 487

Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI 256
                   +C    DA                           + + +A++ MYA+ GSI
Sbjct: 488 --------RCH---DA---------------------------LCVSSALVSMYARKGSI 509

Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
           ++A+ +F+R   ++++SW++M++ Y  HG  +KALD+F  M    +  + +TF+S++  C
Sbjct: 510 ENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGC 569

Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
           +H GLVEEG + F  M  D+ + P + HY CMVDL  RAG+LDE + LIE M       +
Sbjct: 570 AHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTI 629

Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
           W ALLGACR+HKNV+L ++AA+ LL  +P +   YVLLSN+Y+ AG+W++  ++R LM  
Sbjct: 630 WRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDT 689

Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
           ++++K  G +WI+++NK+H F   D +HP SE+IY  L  ++ KL+  GY PDT+F  HD
Sbjct: 690 KKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHD 749

Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
           V E+ K   L  HSE+LA+AFGLIATP    + I KNLRV GD H+ +K VS I  R I+
Sbjct: 750 VAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIV 809

Query: 557 VRDANRFHHFEGGACSCRDYW 577
           +RD  RFHHF+ G CSC D+W
Sbjct: 810 MRDCCRFHHFKSGVCSCGDFW 830



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 143/294 (48%), Gaps = 27/294 (9%)

Query: 77  RQVHAQIV-AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
           +Q+HA  V  G    ++ V   L+ +Y    ++ D   +F GM +R+ V+W+ ++ G+ +
Sbjct: 75  KQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQ 134

Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
               ++    F      G+  + +T   V+     +  + +G+ +H   +K G     FV
Sbjct: 135 AGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFV 194

Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG------------------ANKF 236
           C +L++MYAKC ++++AR +F +M TRD+V+W T+M G                  ++  
Sbjct: 195 CNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSIT 254

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISW----SAMIAAYGYHGQGKKALD 292
           +L     + VI++ A    +  AR++   + +    S+    +A++ AY   GQ  KALD
Sbjct: 255 MLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALD 314

Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346
           +F +M  S+   N +++ +++  C   G +     LFS M +D     D+ + T
Sbjct: 315 VFLLMSGSQ---NVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYST 365



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 6/191 (3%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           RQ HA  +       L V++ L+ +YA   ++ +A  +F    +RD +SW+ M+ G+++ 
Sbjct: 478 RQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQH 537

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GL--DIDQ 193
                  + FR+    G+ +D  T   VI  C     +  G+   D++++  G+   +D 
Sbjct: 538 GYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDH 597

Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
           + C  +VD+Y++   +D+   L + MP       W  ++GA +   +V LG    +    
Sbjct: 598 YAC--MVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLS 655

Query: 253 CGSIDSAREIF 263
              +DSA  + 
Sbjct: 656 LEPLDSATYVL 666


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 197/563 (34%), Positives = 307/563 (54%), Gaps = 63/563 (11%)

Query: 78  QVHAQIVAGGTL---TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
           Q+HAQ V  G L    + I+A  +L  YA  +    A  +F+GM  R++V+W+ ++ G++
Sbjct: 91  QLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYA 150

Query: 135 KVADFINCFETFREFIRCGMQL--DSYTLPFVI----RACRDRKDIVMGRLIHDIVLKSG 188
           +          FR+  R G  +  D YT P ++    R     + + +G  +H  V+K+G
Sbjct: 151 QAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAG 210

Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLF-------------------------------- 216
           L+ D FV A+LV +YA  + ++DA+  F                                
Sbjct: 211 LERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFF 270

Query: 217 -----DQMPTRDLVTWTVMIGANKFLL-----------------DVILGTAVIDMYAKCG 254
                D  PT+ + +    +     +L                 D  +  A++ MY+ CG
Sbjct: 271 NMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCG 330

Query: 255 SIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
            I+ A+++F      NVIS+++MI+A G HG  K+AL+ F  M  + ++P+ +T ++L+ 
Sbjct: 331 CINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLIS 390

Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
           + +H GLV EGL++F+SM D   ++P  +HY C+VD+L R+G + +A+K I  M  E + 
Sbjct: 391 SFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEA 450

Query: 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434
            LW  +LGAC  H++++  +  A+ L E +P    +Y+LL N+YA  GRW +  K+R LM
Sbjct: 451 PLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYARLGRWTEAEKVRSLM 510

Query: 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFEL 494
             R + K   ++WIE+  + ++F V D +HP S EIYR L  L   +++AGY+PD +F  
Sbjct: 511 GERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLISTIKVAGYVPDISFAA 570

Query: 495 HDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV 554
           H++  + K  +LY H EKLA AFG +A P G  +RIMKNLRVCGDCH   K+ S +T R 
Sbjct: 571 HNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCGDCHCAYKYFSLVTGRE 630

Query: 555 IIVRDANRFHHFEGGACSCRDYW 577
           II+RD  RFHHF  G CSC DYW
Sbjct: 631 IILRDNQRFHHFNSGFCSCGDYW 653


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 182/476 (38%), Positives = 271/476 (56%), Gaps = 47/476 (9%)

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           +A +  +  A  LF+ M E++ VSW+ MV GFS+  D       F + +  G++ +++T+
Sbjct: 291 FAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTI 350

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
              + AC     +  G  IH  +  +GL + +                            
Sbjct: 351 VSALSACAKIGGLEAGLRIHKYIKDNGLHLTE---------------------------- 382

Query: 222 RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
                               LGTA++DMYAKCG+I+SA E+F    QK++ +W+ MI  +
Sbjct: 383 -------------------ALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGW 423

Query: 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341
             HG  ++A+  F  M+ + + P+ + F++LL AC H+G V+ GL  F SM  D+ + P 
Sbjct: 424 AIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPS 483

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
           +KHYT +VD+LGR+G+L EAL+ IE M +  D  +WGAL  ACR HK   +A+ A   LL
Sbjct: 484 MKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLL 543

Query: 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD 461
           + +P + G+Y+ LSN YA  G+W+D  ++R LM  R + K  GW+ IEVE ++H+F  GD
Sbjct: 544 KLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGD 603

Query: 462 STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521
             H  S+ I   L  +       GYIP T + LH++++E K   L SH EKLA+AF LI 
Sbjct: 604 HDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALIC 663

Query: 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           T  G  IRI+KNL+VCGDCHS +K+ S I++R I++RD  RFHHF+ G+CSCRD+W
Sbjct: 664 TSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 187/359 (52%), Gaps = 22/359 (6%)

Query: 63  FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
           FIS +   + I Q+ Q+HAQI+     ++ ++  +L+   +L K++  + A+FN  K ++
Sbjct: 84  FISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKN 143

Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
             +++ ++ G +  + F N    FR  +R G++ D  T PFV+++        +G  IH 
Sbjct: 144 LFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHC 203

Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-----DLVTWTVMI------ 231
           ++L+ G+++D FV  +LVDMY K + +  A ++FD+ P R       + W V+I      
Sbjct: 204 MILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKA 263

Query: 232 GANKFLLDVILG---------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282
           G+ K  + +            + +ID +AK G +D A E+FD+M +KNV+SW+ M+  + 
Sbjct: 264 GSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFS 323

Query: 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342
            +G  +KAL +F  ML   V PN  T VS L AC+  G +E GLR+   + D+  +    
Sbjct: 324 RNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDN-GLHLTE 382

Query: 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401
              T +VD+  + G ++ A ++    + +K    W  ++    IH + + A    K ++
Sbjct: 383 ALGTALVDMYAKCGNIESASEVFGE-TEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMM 440



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 76/183 (41%), Gaps = 7/183 (3%)

Query: 58  VDPKFF--ISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           V P  F  +S+L +C  I  +    ++H  I   G      +   L+ +YA    +  A 
Sbjct: 343 VRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESAS 402

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F   +++   +W+VM+ G++           F++ +  G++ D      ++ AC    
Sbjct: 403 EVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSG 462

Query: 173 DIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVM 230
            + +G    D + L   ++        +VDM  +   + +A +  ++MP   D V W  +
Sbjct: 463 QVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGAL 522

Query: 231 IGA 233
             A
Sbjct: 523 FCA 525


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 190/491 (38%), Positives = 276/491 (56%), Gaps = 52/491 (10%)

Query: 90  TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETF 146
           T+ I+   ++  Y     +  A   F  M  R+ VSW+ +V G+   S+  D +  F+T 
Sbjct: 164 TDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTM 223

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
            E     +Q +  TL  V+  C +   +  GR +H   +K                    
Sbjct: 224 VE--DAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMK-------------------- 261

Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
                       +P    +T               +GT+++ MY KCG +D A ++FD M
Sbjct: 262 ------------LPLGRSIT---------------VGTSLLSMYCKCGDLDDACKLFDEM 294

Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
             K++++W+AMI+ Y  HG G+KA+ LF  M    V+P+ IT +++L AC HTGL + G+
Sbjct: 295 HTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGI 354

Query: 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386
           + F +M + + + P V HY+CMVDLL RAG L+ A+ +I SM  E     +G LL ACR+
Sbjct: 355 QCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRV 414

Query: 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWT 446
           +KN++ AE AA+ L+E+ PQN G YV L+N+YA A RW DV+++R  M    + K PG++
Sbjct: 415 YKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYS 474

Query: 447 WIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
           W+E++   H+F   D  HPQ + I+  L  L + ++  GY PD +F LHDV+E +K   L
Sbjct: 475 WMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQML 534

Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
             HSEKLAIAFGLI+T  G  +RI KNLR+CGDCH+  K +S I  R II+RD  RFHHF
Sbjct: 535 MRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHF 594

Query: 567 EGGACSCRDYW 577
            GG CSC DYW
Sbjct: 595 RGGHCSCGDYW 605



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 19/206 (9%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------GANKFLL-------DVIL 242
           +V   +K   I++A  +F  MP R+ V+W  M+         GA + L        D IL
Sbjct: 109 MVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAIL 168

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
            TA++  Y   G++  A E F  M  +N++SW+A++A Y  + +   AL +F  M+   +
Sbjct: 169 WTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAI 228

Query: 303 L-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + PN  T  S+L  CS+   +  G R          +   +   T ++ +  + G LD+A
Sbjct: 229 VQPNPSTLSSVLLGCSNLSALGFG-RQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDA 287

Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
            KL + M   KD   W A++     H
Sbjct: 288 CKLFDEMHT-KDIVAWNAMISGYAQH 312



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 30/173 (17%)

Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
           L+  +  C  ID A ++F  MP RD+ +W  M+                   +K G+I+ 
Sbjct: 78  LLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSG----------------LSKNGAIEE 121

Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR---ITFVSLLYA 315
           A  +F  M  +N +SW+AM+AA    G    A +LF      R  P +   I + +++  
Sbjct: 122 AEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLF------RNAPEKTDAILWTAMVSG 175

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
              TG V++ +  F +M     VR ++  +  +V    +  R  +AL++ ++M
Sbjct: 176 YMDTGNVQKAMEYFRAM----PVR-NLVSWNAVVAGYVKNSRAGDALRVFKTM 223



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 28/162 (17%)

Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
           DAR+LFD +P  D V++  ++                  +  CG ID A  +F  M  ++
Sbjct: 59  DARRLFDSIPHPDAVSYNTLLSC----------------HFACGDIDGAWRVFSTMPVRD 102

Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP--NRITFVSLLYACSHTGLVEEGLRL 328
           V SW+ M++    +G  ++A  +F      R +P  N +++ +++ A + +G +     L
Sbjct: 103 VTSWNTMVSGLSKNGAIEEAEAMF------RAMPARNAVSWNAMVAARASSGDMGAAENL 156

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
           F +  +    + D   +T MV      G + +A++   +M V
Sbjct: 157 FRNAPE----KTDAILWTAMVSGYMDTGNVQKAMEYFRAMPV 194



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 59  DPKFFISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
           +P    S LL C N+  +   RQVH   +      ++ V   LL +Y     L DA  LF
Sbjct: 232 NPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLF 291

Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
           + M  +D V+W+ M+ G+++        + F +    G+  D  TL  V+ AC       
Sbjct: 292 DEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCD 351

Query: 176 MGRLIHDIVLKS---GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
            G    + + ++      +D + C  +VD+  +  +++ A  +   MP
Sbjct: 352 FGIQCFETMQEAYNIEPQVDHYSC--MVDLLCRAGLLERAVNMIHSMP 397


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 192/506 (37%), Positives = 290/506 (57%), Gaps = 19/506 (3%)

Query: 74  FQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-KERDSVSWSVMVGG 132
           F    VHA  V  G   +L V N L + Y +   +     +F+ + + RD V+W+ ++ G
Sbjct: 147 FLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAG 206

Query: 133 FSKVADFINCFETFREF-IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
           + +        E F E  +R  +   +    +V        D+ +G +  D+V K G+ +
Sbjct: 207 YVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEG---ELDVALG-VFRDMVEK-GVRV 261

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
           ++      +   A+  +++  R + +            ++      + V +G A++DM++
Sbjct: 262 NEAAVVTALSAAAQMGLLEHGRFVHE------------VVQRTGMPVSVNVGAALVDMFS 309

Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
           KCG +  ARE+FD M +++V +W+AMI     HG G+ A++LF   L   + P  ITFV 
Sbjct: 310 KCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVG 369

Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
           +L ACS  GLV EG R F  M D + + P+++HY CMVDLLGRAG + EA++LIE M + 
Sbjct: 370 VLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIA 429

Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
            D  LWG +L AC+ H  VDL       L+E +P + GHYVLL+++YA A +W +V ++R
Sbjct: 430 PDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWDEVREVR 489

Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
            LM+ R   K  GW+ +E +  +H+F VGD  H  S +IY ML  ++ +L  AGY+PD +
Sbjct: 490 KLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDSVQIYNMLDMINRRLADAGYVPDVS 549

Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
             LHD+ +E KV  +  HSE+LAIA+G I T  G+ IRI+KNL+VCGDCH F K V+ + 
Sbjct: 550 SVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSPIRIVKNLQVCGDCHEFSKMVTKVF 609

Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
            R IIVRD +RFHH + G CSC DYW
Sbjct: 610 NREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 98/216 (45%), Gaps = 19/216 (8%)

Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP-TRDLV 225
           A   R    +G  +H + +K+G   D +V  AL   Y  C  +   R +FD++P  RD+V
Sbjct: 139 ATDHRASSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVV 198

Query: 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
           TW                 AV+  Y + G + +ARE+F+ M  ++ +SWS ++  Y   G
Sbjct: 199 TW----------------NAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEG 242

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
           +   AL +F  M+   V  N    V+ L A +  GL+E G R    +     +   V   
Sbjct: 243 ELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEHG-RFVHEVVQRTGMPVSVNVG 301

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
             +VD+  + G +  A ++ + M   +D   W A++
Sbjct: 302 AALVDMFSKCGCVAVAREVFDGMP-RRDVFAWNAMI 336


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 200/562 (35%), Positives = 302/562 (53%), Gaps = 62/562 (11%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H   V  G   +++V   LL +YA    L DA  LF     ++ V ++ M+ GF + 
Sbjct: 233 KTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQT 292

Query: 137 ADF-----INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
            D          + F +  R G++   +T   +I+ C   +    G+ IH  + K  +  
Sbjct: 293 EDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQS 352

Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------------ 233
           D+F+ + L+++Y+     +D  + F+  P  D+V+WT MI                    
Sbjct: 353 DEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELL 412

Query: 234 ------NKFLLDVIL----------------GTAV--------------IDMYAKCGSID 257
                 ++F++  +L                G AV              I MYAK G++D
Sbjct: 413 ASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLD 472

Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
           SA+  F+ ++  +V+SWS MI +   HG  K A++LF +M S  + PN+ITF+ +L ACS
Sbjct: 473 SAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACS 532

Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
           H GLVEEGLR + SM  D+ ++ +VKH TC+VDLL RAGRL +A   I +        +W
Sbjct: 533 HGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMW 592

Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
             LL  CRI+K++   +  A+ L+E  PQ    YVLL N+Y +AG      KIR+LM  R
Sbjct: 593 RTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDR 652

Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV 497
            ++K PG +WIEV N++H F VGD +HP S+ IY+ L  + EK    GYI      +   
Sbjct: 653 GIRKEPGQSWIEVGNEVHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGYIDQKIQNVTIS 712

Query: 498 DEEVKVGNL--YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
            +EVK G L    HSEKLA++FG+++ P    +++MKNLRVC DCH+ +K +S + +R I
Sbjct: 713 TKEVK-GTLGVNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREI 771

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           I+RD+ RFHHF+ G+CSC DYW
Sbjct: 772 ILRDSLRFHHFKEGSCSCNDYW 793



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 142/327 (43%), Gaps = 62/327 (18%)

Query: 102 YALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
           Y+    + +A  LF+ M ER  +S+++++ G+  +  +      F E     ++LD ++ 
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221
             V+ AC   KD  +G++IH + +  GL    F+   L+DMY KC+ ID AR LF+    
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDE 173

Query: 222 RDLVTWTVMI------GA------------------NKFLL------------------- 238
            D V+W  +I      GA                  N F L                   
Sbjct: 174 LDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGK 233

Query: 239 -------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                        D+++GTA++DMYAK G +  A ++F     +NV+ ++AMIA +    
Sbjct: 234 TLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTE 293

Query: 286 QGKK-----ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
              K     AL LF  M    + P+  TF S++  C+H    E G ++ + +     ++ 
Sbjct: 294 DIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKH-NIQS 352

Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIES 367
           D    + +++L    G  ++ LK   S
Sbjct: 353 DEFIGSTLIELYSLLGSTEDQLKCFNS 379



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 146/317 (46%), Gaps = 25/317 (7%)

Query: 77  RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
           + +H   +  G    + + N L+ +Y   + +  A  LF    E D+VSW+ ++ G+++V
Sbjct: 130 KVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARV 189

Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD--IVMGRLIHDIVLKSGLDIDQF 194
             +    +   +    G++L+++TL   +++C    +  +  G+ +H   +K GLD+D  
Sbjct: 190 GAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIV 249

Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254
           V  AL+DMYAK   + DA QLF   P +++V +  MI          + T  ID   +C 
Sbjct: 250 VGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAG-------FIQTEDID--KECA 300

Query: 255 SIDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
               A ++F +M+++ +     ++S++I    +    +    +   +    +  +     
Sbjct: 301 Y--EALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGS 358

Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-- 368
           +L+   S  G  E+ L+ F+S       + D+  +T M+    + G+ + AL L   +  
Sbjct: 359 TLIELYSLLGSTEDQLKCFNS-----TPKLDIVSWTTMIAGYAQNGQFESALALFYELLA 413

Query: 369 -SVEKDEGLWGALLGAC 384
              + DE +   +L AC
Sbjct: 414 SGKKPDEFIITTMLSAC 430


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 314/571 (54%), Gaps = 68/571 (11%)

Query: 72  NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-RDSVSWSVMV 130
           N+  IRQ+HA  V  G  + + V N L+  Y+ +  L +A  +F+ + E RD VSW+ MV
Sbjct: 153 NVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMV 212

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             + +  +     E + E    G+ +D +TL  V+ A  + +D++ G   H  ++KSG  
Sbjct: 213 VAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYH 272

Query: 191 IDQFVCAALVDMYAK-------CKVI--------------------------DDARQLFD 217
            +  V + L+D+Y+K       C+ +                          D+A + F 
Sbjct: 273 QNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFR 332

Query: 218 QMPT----RDLVTWTVMIGANKFL---------------LDV-----ILGTAVIDMYAKC 253
           Q+       D  +   +I A   +               LD+      +  A+I MY+KC
Sbjct: 333 QLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKC 392

Query: 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
           G++  A+ +FD M + N +S+++MIA Y  HG G ++L LF  ML     P  ITF+S+L
Sbjct: 393 GNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVL 452

Query: 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
            AC+HTG VE+G   F+ M   F + P+  H++CM+DLLGRAG+L EA +LIE++  +  
Sbjct: 453 AACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPG 512

Query: 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433
              W ALLGACRIH NV+LA  AA  LL+  P N   YV+L+N+Y++ GR QD A +R L
Sbjct: 513 FFFWSALLGACRIHGNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKL 572

Query: 434 MTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFE 493
           M  R +KK PG +WIEV  +IH F   D+ HP  ++I   L  +  K++  GY P+    
Sbjct: 573 MRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSA 632

Query: 494 LHDVD-------EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
           L   D       EE+++G+   HSEKLA++FGL++T EG  I + KNLR+C DCH+ IK+
Sbjct: 633 LVGGDDRVWQREEELRLGH---HSEKLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKY 689

Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           +S + +R I VRD++RFH F+ G CSC  YW
Sbjct: 690 ISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 143/340 (42%), Gaps = 69/340 (20%)

Query: 91  NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           N+   N L+  YA    +  AH LF+ M + DSVS++ ++  +++  D    F+ F E  
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
              + +D +TL  +I AC     ++  R +H + + +GLD    V  AL+  Y+K   + 
Sbjct: 133 EAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTGLDSYVSVGNALITSYSKNGFLK 190

Query: 211 DARQLFDQMPT-RDLVTWTVMIGA-------------------NKFLLDVILGTAVI--- 247
           +AR++F  +   RD V+W  M+ A                      ++D+    +V+   
Sbjct: 191 EARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAF 250

Query: 248 --------------------------------DMYAKCGS-IDSAREIFDRMRQKNVISW 274
                                           D+Y+KCG  +   R++FD +   +++ W
Sbjct: 251 TNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLW 310

Query: 275 SAMIAAYG-YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
           + MI+ Y  Y     +AL+ F  +      P+  + V ++ ACS+     +G ++     
Sbjct: 311 NTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG--- 367

Query: 334 DDFAVRPDVKH-----YTCMVDLLGRAGRLDEALKLIESM 368
              A++ D+          ++ +  + G L +A  L ++M
Sbjct: 368 --LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTM 405



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 114/245 (46%), Gaps = 30/245 (12%)

Query: 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL 224
           ++ C   +D+  G+ +H + +KS +    ++    + +Y+KC+ +  AR++FD     ++
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 225 VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
            ++  +I A                YAK   ++ A ++FD M Q + +S++ +IAAY   
Sbjct: 75  FSFNTLISA----------------YAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARR 118

Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACS-HTGLVEE--GLRLFSSMWDDFAVRPD 341
           G  + A  LF  M  + +  +  T   ++ AC  + GL+ +   L + + + D +     
Sbjct: 119 GDTQPAFQLFLEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGL-DSY----- 172

Query: 342 VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-----EMA 396
           V     ++    + G L EA ++   +S ++DE  W +++ A   H+    A     EM 
Sbjct: 173 VSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMT 232

Query: 397 AKSLL 401
            + L+
Sbjct: 233 VRGLI 237


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 201/562 (35%), Positives = 297/562 (52%), Gaps = 55/562 (9%)

Query: 71  RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
           R + Q  Q+HA ++A G L +  ++NKL+  Y     +  AHA+F    + +  SW +++
Sbjct: 45  RALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQPDPNVFSWMMLI 104

Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
               + A        +R     G   D++ +  +  A  D  ++ +GR I   +  + + 
Sbjct: 105 SACLRNARPRAALGHYRAMQLRGCHPDAHVVSAIFCAVADTANLELGRSITAPLASTAML 164

Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------- 230
            D  V  +L++MY +C  +DD  + F  MP+RD V+WT M                    
Sbjct: 165 HDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVM 224

Query: 231 -------------------------IGANKFLLDVILGT----------AVIDMYAKCGS 255
                                    I   + L D I+ +          A+++MYAKCG 
Sbjct: 225 DQDGFRITSALTFATLVDACGNLSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGR 284

Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
           +D ARE+FD+  + N I++S+M+AAY  +G    AL LF  M      P+ +TF  +LYA
Sbjct: 285 VDEARELFDQTLEPNNITFSSMVAAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYA 344

Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
           CSH G V++    F+++  D  +    +H+ C VDLL RAG L +A K +  M +  D  
Sbjct: 345 CSHGGFVDQAWHYFTTLEPDRGIPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSV 404

Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435
            W +LL ACRIH+NV++   AA+ +    P   G Y LLSN+Y++AG+W   AK++ LM 
Sbjct: 405 SWMSLLQACRIHRNVEIGARAAEHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMR 464

Query: 436 RRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELH 495
            R +KK  G +WIE+  K  +F VGDS HP   +I + +  +S+ ++  GY+PDT   LH
Sbjct: 465 DRGIKKPGGRSWIEINGKTSEFIVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLH 524

Query: 496 DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVI 555
           D +EE K   LY HSEKLAI  GLI TP  T I I+KN+RVC DCH+  K +S +T R I
Sbjct: 525 DAEEEEKEDILYFHSEKLAIGLGLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKI 584

Query: 556 IVRDANRFHHFEGGACSCRDYW 577
           ++RD N FHH E G CSCRDYW
Sbjct: 585 VIRDINLFHHMEDGNCSCRDYW 606


>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
 gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
          Length = 511

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 186/467 (39%), Positives = 266/467 (56%), Gaps = 50/467 (10%)

Query: 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170
           A  +FN M+ RD V+W+ M+GG+ + A F      FR   +  ++ D YT   VI  C  
Sbjct: 95  AKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMNKSNVEPDKYTFASVINGCAK 154

Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
              +   + +H+++++  ++                                        
Sbjct: 155 LGALKHAQWVHELLIEKRIE---------------------------------------- 174

Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
                  L+ IL +A+IDMY+KCG I +A+EIFD +++ NV  W+AMI+    HG    A
Sbjct: 175 -------LNFILSSALIDMYSKCGKIQTAKEIFDGVQRNNVCIWNAMISGLAVHGLALDA 227

Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
           + +F  M    VLP+ ITF+ +L ACSH GLV+EG + F  M   ++V+P ++HY  MVD
Sbjct: 228 IKVFTKMEVENVLPDAITFLGILTACSHCGLVKEGRKYFDLMRSRYSVQPHIEHYGAMVD 287

Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
           LLGRAG L+EA  +I+SM +E D  +W ALLGACR +K  +L E A  ++        G 
Sbjct: 288 LLGRAGLLEEAFAMIKSMPMEPDVVIWRALLGACRTYKKPELGEAAMANI---SRLRSGD 344

Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
           YVLLSN+Y +  RW     + ++M ++ + K+ G +  E    +H F  GD +HP++E I
Sbjct: 345 YVLLSNIYCSQKRWDTAQGVWEMMKKKGVHKVRGKSCFEWAGFLHPFKAGDRSHPETEAI 404

Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
           Y+ML  L ++ +LAGY+P T+    DV EE K GNLY HSEKLA+A+G++ T  G  +RI
Sbjct: 405 YKMLEGLIQRTKLAGYVPTTDLVTMDVSEEEKEGNLYHHSEKLALAYGILKTTSGAEVRI 464

Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
            KNLR+C DCHS+IK VS +  RVIIVRD  RFH FE G CSC DYW
Sbjct: 465 SKNLRICYDCHSWIKIVSRLLSRVIIVRDRIRFHRFENGLCSCGDYW 511


>gi|357111099|ref|XP_003557352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 685

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 205/578 (35%), Positives = 310/578 (53%), Gaps = 68/578 (11%)

Query: 62  FFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA----------LHKA 107
           F ++++L C    R++   + +H  ++  G   ++++ N +L +YA            KA
Sbjct: 114 FVLAAVLRCCAGLRDMESGKCIHGWMLRNGAHLDVVLCNAVLDMYAKCGDYECTKRAFKA 173

Query: 108 LTDAHA---------------------LFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           +T   A                     LF+    RD+ SW+ ++ G  +        +  
Sbjct: 174 MTKIDAVSWNIVISACMQNGDILGSMQLFDVSPLRDTSSWNTVISGLMRNGCAAKALDCL 233

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
               R  +  + YT    +          +GR +H  VL + +D D FV ++L+DMY KC
Sbjct: 234 YRMARARVVFNHYTYSTALALAGMLSLQDLGRQLHGRVLTAAVDTDAFVRSSLMDMYCKC 293

Query: 207 KVIDDARQLFDQMP--TRDL-VTWTVMIG------------------------ANKFLLD 239
             ++ A  +FD     T D+   W+ M+                         A++F L 
Sbjct: 294 GSMETAVLIFDSWSQLTGDMNFAWSAMVAGYVQNGREEEAFEFFRSMLREGVAAHQFTL- 352

Query: 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299
               T+ I   A  G ++  R IFDR   KNV  W++M+ +Y  HG+G+ A++LF  M +
Sbjct: 353 ----TSAIAACANAGMVEQGR-IFDRACAKNVALWTSMLCSYASHGKGRMAIELFNRMTA 407

Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
            ++ PN IT V +L ACSH  LV EG   F  M D++ + P ++HY CMVDL GRAG L 
Sbjct: 408 EKITPNEITLVGVLSACSHGRLVNEGDHFFKLMQDEYGIVPSIEHYNCMVDLYGRAGMLY 467

Query: 360 EALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419
           +A   I+  +++ +  +W  LL ACR+HK+++ A++A+++L++ +  + G YV+LSNVYA
Sbjct: 468 KAHNFIKENNIKHEAIVWKTLLSACRLHKHMEYAKLASENLIQLEECDAGSYVMLSNVYA 527

Query: 420 NAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSE 479
              +W D +K+R  M  RR+ K PG +WI ++N +H F  GD+ HP+S EIY  L  L E
Sbjct: 528 THSKWLDTSKLRSSMRERRVWKQPGRSWIHLKNIMHTFVAGDTAHPRSAEIYAYLEKLME 587

Query: 480 KLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
           +L+  GY   T+   HDV+EE +   L  HSEKLAIAFG+I+TP GT +RI KNLRVC D
Sbjct: 588 RLKDLGYTSRTDLVAHDVEEEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCVD 647

Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CH  IK+VS  T R I+VRD  RFHHF+   CSC D+W
Sbjct: 648 CHEAIKYVSQATDREIVVRDLYRFHHFKDAKCSCEDFW 685



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 123/261 (47%), Gaps = 18/261 (6%)

Query: 110 DAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREF-IRCGMQLDSYTLPFVIRAC 168
           +A  L +   +R + +W+  + G ++    ++    F E   + G + +++ L  V+R C
Sbjct: 64  NARKLLDETPKRSASAWTAFIAGCARSGRHMDGLSAFTEMRAKGGAEPNAFVLAAVLRCC 123

Query: 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228
              +D+  G+ IH  +L++G  +D  +C A++DMYAKC   +  ++ F  M   D V+W 
Sbjct: 124 AGLRDMESGKCIHGWMLRNGAHLDVVLCNAVLDMYAKCGDYECTKRAFKAMTKIDAVSWN 183

Query: 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288
           ++I A                  + G I  + ++FD    ++  SW+ +I+    +G   
Sbjct: 184 IVISA----------------CMQNGDILGSMQLFDVSPLRDTSSWNTVISGLMRNGCAA 227

Query: 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348
           KALD    M  +RV+ N  T+ + L       L + G +L   +    AV  D    + +
Sbjct: 228 KALDCLYRMARARVVFNHYTYSTALALAGMLSLQDLGRQLHGRVLTA-AVDTDAFVRSSL 286

Query: 349 VDLLGRAGRLDEALKLIESMS 369
           +D+  + G ++ A+ + +S S
Sbjct: 287 MDMYCKCGSMETAVLIFDSWS 307


>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
          Length = 602

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 190/461 (41%), Positives = 274/461 (59%), Gaps = 49/461 (10%)

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIR---CGMQLDSYTLPFVIRACRDRKDIVMG 177
           RD VSW+ ++   ++    +   E +R        G++ D+ TL  V+ +C         
Sbjct: 187 RDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSC--------- 237

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
              H    + GLD++++V                          RD +          F 
Sbjct: 238 --AHTGARRVGLDVERYV--------------------------RDTIP--------GFR 261

Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
            ++ L  A+I+ +A+CGS+  A+E+FD M +++V+SW+ +I  YG HGQG  A+DLF  M
Sbjct: 262 DNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLFETM 321

Query: 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357
           +S    P+ +  V LL ACSH G+ +EG + FS+M  D+ +RP ++HYTCMVDLLGRAGR
Sbjct: 322 VSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKLEHYTCMVDLLGRAGR 381

Query: 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
           LDEA +LI SM +  D  +WGALLGAC+IHKNV++ E A + ++  +P N G+YVL++N+
Sbjct: 382 LDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGYYVLMANI 441

Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
           YA+AG+   VAK+R  M RR L+K PG +++E + K+H F   D +HPQ+  IY ++V L
Sbjct: 442 YADAGQLDGVAKVRAAMRRRGLRKEPGCSYVEHKGKVHLFMADDHSHPQARRIYELVVEL 501

Query: 478 SEKL-ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
              + E  G           V E   V  +  HSEKLA+AFGL+ T  G+ I ++KNLRV
Sbjct: 502 ERMVKEKTGGDVVEERAEKAVAEAAAVPLVGFHSEKLAVAFGLLNTEAGSEIVVIKNLRV 561

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCHSF+K +S +T R  +VRDA+RFH FE GACSCRDYW
Sbjct: 562 CGDCHSFLKTISELTNRAFLVRDASRFHRFENGACSCRDYW 602



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 28/209 (13%)

Query: 87  GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF 146
           G   NL + N L+  +A   +L  A  LF+ M ER  VSW+ ++ G+          + F
Sbjct: 259 GFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTLIIGYGMHGQGDIAVDLF 318

Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGR-----LIHDIVLKSGLDIDQFVCAALVD 201
              +      DS  +  ++ AC        GR     +  D  L+  L  + + C  +VD
Sbjct: 319 ETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYCLRPKL--EHYTC--MVD 374

Query: 202 MYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGANKFLLDVILGTAVID------------ 248
           +  +   +D+AR+L   MP   D   W  ++GA K   +V +G    +            
Sbjct: 375 LLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAFERVVSLEPANVGY 434

Query: 249 ------MYAKCGSIDSAREIFDRMRQKNV 271
                 +YA  G +D   ++   MR++ +
Sbjct: 435 YVLMANIYADAGQLDGVAKVRAAMRRRGL 463



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 24/237 (10%)

Query: 180 IHDIVLKSGL--DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
           IH +  K GL    D ++ +AL+  Y++ +++  ARQL D++P       T     N  +
Sbjct: 79  IHALAAKRGLLPSSDAYLLSALLSSYSRLRLLPLARQLLDELPLASTPPATARTAFNSLI 138

Query: 238 ---------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAA 280
                          L     + +    A       AR++F+ M +  ++++SW+A+I+A
Sbjct: 139 SGSTPSRRDRGSPRTLPWPTASCLSTRAAAAAGASLARQVFEEMPRASRDLVSWNAVISA 198

Query: 281 YGYHGQGKKALDLFPMMLSSR---VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF- 336
           +  +G   +A++L+  M       V P+ +T V +L +C+HTG    GL +   + D   
Sbjct: 199 HAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTGARRVGLDVERYVRDTIP 258

Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
             R ++     +++   R G L +A +L + M  E+    W  L+    +H   D+A
Sbjct: 259 GFRDNLPLCNALINFHARCGSLAQAQELFDEMP-ERSVVSWTTLIIGYGMHGQGDIA 314


>gi|297737119|emb|CBI26320.3| unnamed protein product [Vitis vinifera]
          Length = 522

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 192/521 (36%), Positives = 303/521 (58%), Gaps = 24/521 (4%)

Query: 67  LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSW 126
           L  C+ +  ++QVHA ++  G + +    +++L I +     T A ++FN +       +
Sbjct: 16  LEKCKTLDTLKQVHAHMITTGLIFHTYPLSRILLISST-IVFTHALSIFNHIPNPTIFLY 74

Query: 127 SVMVGGFSKVADFIN-CFETF-REFIRCGMQLDSYTLPFVIRACRD----RKDIVMGRLI 180
           + ++   + +    +  F  + R      ++ + +T P + +AC      R DI + + +
Sbjct: 75  NTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHDIFLIKSV 134

Query: 181 HDIVL---KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKF 236
             + +   KS +  ++    AL+   A+   +                 W  V +  +  
Sbjct: 135 LTLFIEMQKSLIKANEVTLVALISACAELGALSQG-------------AWAHVYVLKHNL 181

Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
            L+  +GTA+IDMY+KCG +D A ++FD++  ++ + ++AMI  +  HG G +ALDLF  
Sbjct: 182 KLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKK 241

Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
           M    + P+ +T V  + +CSH GLVEEG  +F SM + + V P ++HY C+VDLLGRAG
Sbjct: 242 MTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAG 301

Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
           RL EA + + +M ++ +  +W +LLGA R+H N+++ E+  K L++ +P+  G+YVLLSN
Sbjct: 302 RLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSN 361

Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
           +YA+  RW DV ++R LM    + K+PG + +EV   +H+F +GD THP+S+EIY  L  
Sbjct: 362 MYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEE 421

Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
           +S +L   G+ P T   L D++EE K   L  HSE+LAIAF LIA+     IRI+KNLRV
Sbjct: 422 MSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRV 481

Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           CGDCH+  K +S I  R IIVRD NRFHHF+ GACSC DYW
Sbjct: 482 CGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 522


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 200/555 (36%), Positives = 301/555 (54%), Gaps = 71/555 (12%)

Query: 55  TRSVDP-KFFISSLLS-CRN---IFQIRQVHAQIVAGGT----LTNLIVANKLLYIYALH 105
           ++ + P +F  +SLLS C N       + VH Q +           L V N L+ +Y+  
Sbjct: 289 SKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKS 348

Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165
             +  A  +F+ M  +D VSW+ ++ G+ +     N    F+E            +P+  
Sbjct: 349 GKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKE------------MPY-- 394

Query: 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL- 224
                               KS L         +V  Y    + +DA +LF+QM + D+ 
Sbjct: 395 --------------------KSELS-----WMVMVSGYVHGGLAEDALKLFNQMRSEDVK 429

Query: 225 ---------VTWTVMIGANK-------------FLLDVILGTAVIDMYAKCGSIDSAREI 262
                    V     +GA K             F      G A++ MYA+CG++  AR +
Sbjct: 430 PCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLV 489

Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
           F  M   + +SW+AMI+A G HG G++AL+LF  M++  + P+RI+F+++L AC+H GLV
Sbjct: 490 FLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLV 549

Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
           ++G + F SM  DF + P   HY  ++DLLGRAGR+ EA  LI++M  E    +W A+L 
Sbjct: 550 DDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILS 609

Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
            CRI+ +++L   AA  L +  P++ G Y+LLSN Y+ AGRW D A++R LM  R +KK 
Sbjct: 610 GCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKE 669

Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
           PG +WIEV NK+H F VGD+ HP + E+YR L  +  K+   GY+PDT F L D+    K
Sbjct: 670 PGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEK 729

Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
              L++HSE+LA++FGL+  P G  + ++KNL++CGDCH+ +  +S    R I+VRD  R
Sbjct: 730 EYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRR 789

Query: 563 FHHFEGGACSCRDYW 577
           FHHF+ G CSC +YW
Sbjct: 790 FHHFKDGECSCGNYW 804



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 167/370 (45%), Gaps = 52/370 (14%)

Query: 93  IVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFI 150
           + A  L+  YA+   L D+ A F+ +    RD+V  + M+  F++ +        FR  +
Sbjct: 90  VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLL 149

Query: 151 RC--GMQLDSYTLPFVIRACRDRKDIVMGRL--IHDIVLKSGLDIDQFVCAALVDMYAKC 206
                ++ D Y+   ++ A     D+ +     +H  V K G      V  AL+ +Y KC
Sbjct: 150 ASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKC 209

Query: 207 K---VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
               V  DAR++ D+MP +D +TWT           +++G      + + G + +AR  F
Sbjct: 210 DAPGVTRDARKVLDEMPEKDELTWTT----------IVVG------HVRKGDVHAARSAF 253

Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
           + +  +  + W+AMI+ Y   G   +A +LF  M+S R+ P+  TF SLL AC++ G   
Sbjct: 254 EEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFL 313

Query: 324 EGLRL---FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW--- 377
            G  +   F  +  DF     +     +V L  ++G++  A K+ +SM++ KD   W   
Sbjct: 314 HGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTL-KDVVSWNTI 372

Query: 378 -------GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
                  G L  A RI K     EM  KS L         ++++ + Y + G  +D  K+
Sbjct: 373 LSGYIESGCLDNAARIFK-----EMPYKSELS--------WMVMVSGYVHGGLAEDALKL 419

Query: 431 RDLMTRRRLK 440
            + M    +K
Sbjct: 420 FNQMRSEDVK 429



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 160/386 (41%), Gaps = 70/386 (18%)

Query: 110 DAHALFNGMKERDS---VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
           D HA  +  +E D    V W+ M+ G+ +       FE FR  +   +  D +T   ++ 
Sbjct: 245 DVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLS 304

Query: 167 ACRDRKDIVMGRLIH--------DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
           AC +    + G+ +H        D V ++ L ++     ALV +Y+K   I  A ++FD 
Sbjct: 305 ACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNN----ALVTLYSKSGKIAVATKIFDS 360

Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
           M  +D+V+W  ++                  Y + G +D+A  IF  M  K+ +SW  M+
Sbjct: 361 MTLKDVVSWNTILSG----------------YIESGCLDNAARIFKEMPYKSELSWMVMV 404

Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS-------- 330
           + Y + G  + AL LF  M S  V P   T+   + AC   G ++ G +L +        
Sbjct: 405 SGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFE 464

Query: 331 ----------SMWDD----------FAVRPDVK--HYTCMVDLLGRAGRLDEALKLIESM 368
                     +M+            F V P+V    +  M+  LG+ G   EAL+L + M
Sbjct: 465 ASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQM 524

Query: 369 ---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HYVLLSNVYANAGR 423
               +  D   +  +L AC     VD      +S+      +PG  HY  L ++   AGR
Sbjct: 525 VAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGR 584

Query: 424 WQDVAKIRDLMTRRRLKKIPG-WTWI 448
              + + RDL+     +  P  W  I
Sbjct: 585 ---IGEARDLIKTMPFEPTPAIWEAI 607


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 187/520 (35%), Positives = 296/520 (56%), Gaps = 55/520 (10%)

Query: 64  ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
           I++ +  R +++ RQVHA+++       + +  +L+ +Y    AL DA  + + M ER  
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
           VSW+ M+ G+S+    +   + F + +R G   + YTL  V+ +C   + I  G+ +H +
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFL 237
           ++K+  +   FV ++L+DMYAK + I +AR++FD +P RD+V+ T +I      G ++  
Sbjct: 137 LVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEA 196

Query: 238 LD------------------------------------------------VILGTAVIDM 249
           LD                                                V L  ++IDM
Sbjct: 197 LDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDM 256

Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
           Y+KCG +  +R +FD M +++V+SW+AM+  YG HG G + + LF   L   V P+ +T 
Sbjct: 257 YSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTL 315

Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
           +++L  CSH GLV+EGL +F ++  + +      HY C++DLLGR+GRL++AL LIE+M 
Sbjct: 316 LAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 375

Query: 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429
            E    +WG+LLGACR+H NV + E+ A+ LLE +P+N G+YV+LSN+YA AG W+DV K
Sbjct: 376 FESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFK 435

Query: 430 IRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPD 489
           +R LM  + + K PG +WI ++  IH F   +  HP  ++I   +  +   ++ AG++PD
Sbjct: 436 VRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPD 495

Query: 490 TNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIR 529
            +  LHDVD+E K   L  HSEKLAI FGL+ TP G  IR
Sbjct: 496 LSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 164/337 (48%), Positives = 240/337 (71%), Gaps = 1/337 (0%)

Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS-S 300
           L T+++DMYAK G +  A  +F+++  + +ISW+AMI  +G HG    A +LF  M S +
Sbjct: 309 LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEA 368

Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
           +V+P+ ITFV +L AC+H G+V+E   +F  M   ++++P V+HYTC+VD+LG +GR  E
Sbjct: 369 QVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKE 428

Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
           A  +I+ M V+ D G+WGALL  C+IHKNV+LAE+A + L+E +P++ G+YVLLSN+YA 
Sbjct: 429 ASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAE 488

Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
           +G+W++ A++R LMT R LKKI   +WIE++ K H F VGD++HP+S++IY  L  L   
Sbjct: 489 SGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGL 548

Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
           +   GY+PDT    H+V+++ K   ++ HSE+LAIAFGLI+TP  T + + KNLRVC DC
Sbjct: 549 ISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDC 608

Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
           H  IK +S I +R II+RD NR+HHF  G CSC+D+W
Sbjct: 609 HVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645


>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 322/576 (55%), Gaps = 62/576 (10%)

Query: 62  FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK--ALTDAHALFNGMK 119
           +F   L  C +  QI+Q+ A ++  G         KLL + A+     L+ A  +F  + 
Sbjct: 3   YFNLLLQKCSSFSQIKQLQANLIINGDFHFSSSRTKLLELCAISSFGDLSYALHIFRYIP 62

Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMG 177
              +  W+ ++ G +  +D  N    +R         ++D+ T  F ++AC         
Sbjct: 63  YPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEA 122

Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM------------------ 219
             +H  +L+ G + D  +   L+D YAK   +D A++LFD+M                  
Sbjct: 123 IQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQG 182

Query: 220 --PTRDLVTWTVM----------------------IGA-------NKFLLD------VIL 242
             P   ++T+  M                      +GA       +K++++      V +
Sbjct: 183 SRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQV 242

Query: 243 GTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
              VIDMYAKCGS+D A  +F+ MR  K++I+W+ MI A+  HG G KALDLF  +  S 
Sbjct: 243 CNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSG 302

Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
           + P+ ++++++L AC+H GLVE+GL+LF+SM     + P++KHY  MVDLLGRAGRL EA
Sbjct: 303 MSPDAVSYLAVLCACNHAGLVEDGLKLFNSM-TQRGLEPNIKHYGSMVDLLGRAGRLKEA 361

Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
             ++ S+    +  LW  LLGACR + +V++AE+A++ L+E    + G +VLLSNVYA  
Sbjct: 362 YDIVSSLPFP-NMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVLLSNVYAAR 420

Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
            RW DV ++RD M RR +KK PG+++IE++ K+++F  GD +H    EIY  L  ++ ++
Sbjct: 421 QRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAKLDEINLRI 480

Query: 482 ELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
           +  GY  DT+  LHD+ +E K   L  HSEKLA+AFGL  T EGT I+++KNLR+CGDCH
Sbjct: 481 KAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKNLRICGDCH 540

Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             IK +S I  R IIVRD  RFH F+ G CSC+DYW
Sbjct: 541 VVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 203/592 (34%), Positives = 310/592 (52%), Gaps = 89/592 (15%)

Query: 75  QIRQVHAQIVAGGTLTNLIVANKLLYIYAL--HKALTDAHALFNGMKERDSVSWSVMVGG 132
           ++RQ+HA++   GTL +  +    +   AL  HK L  A+ + +  ++    + + M+  
Sbjct: 21  EVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRA 80

Query: 133 FSKVADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
             K       F+ +R  +  G  L  D+YT+ F+++AC   +    G  +H + ++ G D
Sbjct: 81  HCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFD 140

Query: 191 IDQFVCAALVDMYAKCKVIDD-------------------------------ARQLFDQM 219
            D  V   L+ +YA+   +D                                AR+LF+ M
Sbjct: 141 NDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGM 200

Query: 220 PTRDLVTWTVM-----------------------------------------IGA----- 233
           P RD + W  M                                         +GA     
Sbjct: 201 PERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGR 260

Query: 234 --------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHG 285
                   NK  + V L T ++D+YAKCG ++ A E+F  M +KNV +WS+ +     +G
Sbjct: 261 WAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNG 320

Query: 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345
            G+K L+LF +M    V PN +TFVS+L  CS  G V+EG R F SM ++F + P ++HY
Sbjct: 321 FGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHY 380

Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405
            C+VDL  RAGRL++A+ +I+ M ++    +W +LL A R++KN++L  +A+K +LE + 
Sbjct: 381 GCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELET 440

Query: 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHP 465
            N G YVLLSN+YA++  W +V+ +R  M  + ++K PG + +EV  ++H+F VGD +HP
Sbjct: 441 ANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHP 500

Query: 466 QSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEG 525
           +  +I  +   +S +L LAGY  DT   + D+DEE K   L  HSEK AIAFG+++  E 
Sbjct: 501 KYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKED 560

Query: 526 THIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
             IRI+KNLRVCGDCH     +S I  R IIVRD NRFHHF+ G CSC  +W
Sbjct: 561 VPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 9/188 (4%)

Query: 64  ISSLLSCRNIF---QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE 120
           IS L +C  +    Q R  H+ I        + +A  L+ +YA    +  A  +F GM+E
Sbjct: 244 ISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEE 303

Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
           ++  +WS  + G +       C E F    + G+  ++ T   V+R C     +  G+  
Sbjct: 304 KNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRH 363

Query: 181 HDIVLKS-GLD--IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD-LVTWTVMIGANKF 236
            D +    G++  ++ + C  LVD+YA+   ++DA  +  QMP +     W+ ++ A++ 
Sbjct: 364 FDSMRNEFGIEPQLEHYGC--LVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRM 421

Query: 237 LLDVILGT 244
             ++ LG 
Sbjct: 422 YKNLELGV 429


>gi|218202317|gb|EEC84744.1| hypothetical protein OsI_31741 [Oryza sativa Indica Group]
          Length = 563

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 196/498 (39%), Positives = 275/498 (55%), Gaps = 66/498 (13%)

Query: 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205
           F   +R G   D       +  C   +D      +H    K G    + VC  L+  YA 
Sbjct: 66  FDHLLRSGADPDHVAYALALGRCARGRDHRAAAQLHSHAAKRGAASHRRVCNGLIHAYAV 125

Query: 206 CKVIDDARQLFDQ-------------------------------MPTRDLVTWTV----- 229
           C  + DAR++FD+                               M  RD V+W       
Sbjct: 126 CGSLLDARKVFDRGHEGDAVAWNSLLRGYAAAGDVNALREFFVGMQARDTVSWNTIIAWC 185

Query: 230 ---------------MIGANKFLLDVI-------------LGTAVIDMYAKCGSIDSARE 261
                          M+ + + L D +             L +A+I+MY+KC  I+ A  
Sbjct: 186 VENGEYEEAIAVFREMLASMECLPDRVTLFPGKGIEVEERLSSALINMYSKCACIEGAVH 245

Query: 262 IFDRM-RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
           +F+ +  Q NV +W+AM+A +  +G  +KAL+LF  M  + ++PN+ITF ++L ACSH G
Sbjct: 246 VFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEITGLVPNKITFNTVLNACSHGG 305

Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
            VEEG+  F  M   + + PD+ HY CMVDL  RAG  D+A K+I+ M ++ D  +W AL
Sbjct: 306 FVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDKAEKMIQMMPMKPDAAVWKAL 365

Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
           +GAC+ H+N +L   A   L+E  P +   YVLLSN+YA  G W  V K+R LM  R ++
Sbjct: 366 VGACKTHRNFELGRKAGHMLIEAAPNDHAGYVLLSNIYALDGNWTGVHKVRKLMLDRGVQ 425

Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDV-DE 499
           K+PG + IE++  IH+F  GD +H   E+IY ML  + ++L++AGY+PDT+  L D+ DE
Sbjct: 426 KVPGSSSIEIDGVIHEFISGDKSHSSKEDIYEMLSEMCQQLKVAGYVPDTSHVLLDIDDE 485

Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
           +VK  +L  HSEKLAIAFGLI+T  GT IRI KNLRVCGDCH+ +K +S I  R IIVRD
Sbjct: 486 DVKESSLALHSEKLAIAFGLISTAPGTPIRIAKNLRVCGDCHNAVKLLSKIYGRCIIVRD 545

Query: 560 ANRFHHFEGGACSCRDYW 577
           ANRFHHF  G+CSC D+W
Sbjct: 546 ANRFHHFREGSCSCGDFW 563



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 3/169 (1%)

Query: 94  VANKLLYIYALHKALTDAHALFNGMKERDSV-SWSVMVGGFSKVADFINCFETFREFIRC 152
           +++ L+ +Y+    +  A  +F  +  + +V +W+ M+ GF+         E F      
Sbjct: 226 LSSALINMYSKCACIEGAVHVFENLGAQMNVDTWNAMLAGFTANGCSEKALELFARMEIT 285

Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDD 211
           G+  +  T   V+ AC     +  G    + + K  G++ D      +VD++ +  + D 
Sbjct: 286 GLVPNKITFNTVLNACSHGGFVEEGMGCFERMTKVYGIEPDIAHYGCMVDLFCRAGLFDK 345

Query: 212 ARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259
           A ++   MP + D   W  ++GA K   +  LG     M  +    D A
Sbjct: 346 AEKMIQMMPMKPDAAVWKALVGACKTHRNFELGRKAGHMLIEAAPNDHA 394


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 274/489 (56%), Gaps = 47/489 (9%)

Query: 89  LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFRE 148
           + +L VAN L+  YA       A ALF+ M  RD V+W+ ++ G ++          +R+
Sbjct: 74  VAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRD 133

Query: 149 FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208
            +  G++ D Y +   + +C     + +G+ +H   ++ GL+                  
Sbjct: 134 MVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLE------------------ 175

Query: 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268
                                      FL    +G +++ MYAK GS+  AR++FD  R 
Sbjct: 176 --------------------------PFL---SVGNSLVSMYAKTGSLREARKVFDATRL 206

Query: 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328
           +  ++W+A+I  Y  +G+G+++L ++  M+ S   P+ +TF+ LL+ACSH GLV+ G   
Sbjct: 207 RCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAH 266

Query: 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK 388
           F SM  D  + P   HY CMVD+LGRAGRLDEA++L++  +++ D  +W ALLGACR H+
Sbjct: 267 FKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGACRTHR 326

Query: 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448
           N +LAE AA+ +    P +   Y++LSN+Y+   RW DVA+IR LM  R + K PG +W+
Sbjct: 327 NAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAKEPGCSWV 386

Query: 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYS 508
                 H F V D  HP+++EIYR +  + EK+   G++ DT++ L D   E +   L  
Sbjct: 387 VASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGREKGLAH 446

Query: 509 HSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEG 568
           HSE+LA+AFGL+A P G  +R+ KNLRVCGDCH  IK V+ +  R II+RD+N FHH   
Sbjct: 447 HSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNCFHHMRD 506

Query: 569 GACSCRDYW 577
           G CSC DYW
Sbjct: 507 GVCSCGDYW 515



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 13/211 (6%)

Query: 58  VDPKFFI--SSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
           V+P  ++  ++L SC     +   + VHA  V  G    L V N L+ +YA   +L +A 
Sbjct: 139 VEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREAR 198

Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
            +F+  + R  V+W+ ++ G+++        + + E +  G + D  T   ++ AC    
Sbjct: 199 KVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAG 258

Query: 173 DIVMGRLIHDIVLKSGLDI----DQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTW 227
            +  GR  H   +++   I    D + C  +VD+  +   +D+A +L DQ   + D   W
Sbjct: 259 LVDAGR-AHFKSMQADHGITPGPDHYAC--MVDVLGRAGRLDEAMELLDQSTMKLDATVW 315

Query: 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258
             ++GA +   +  L     +M  +    D+
Sbjct: 316 KALLGACRTHRNAELAERAAEMVWRLDPTDA 346


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.325    0.138    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,771,956,548
Number of Sequences: 23463169
Number of extensions: 351471827
Number of successful extensions: 1133361
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7667
Number of HSP's successfully gapped in prelim test: 3670
Number of HSP's that attempted gapping in prelim test: 1003399
Number of HSP's gapped (non-prelim): 52553
length of query: 577
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 429
effective length of database: 8,886,646,355
effective search space: 3812371286295
effective search space used: 3812371286295
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 80 (35.4 bits)