BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037414
(577 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/581 (39%), Positives = 332/581 (57%), Gaps = 59/581 (10%)
Query: 56 RSVDPKFFISSLLSCRNIFQIRQ---VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
R++D +S L +C + +H+ + G + L V+NKL+ +YA L D
Sbjct: 243 RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQ 302
Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
+F+ M RD +SW+ ++ + + F+E +Q D TL +
Sbjct: 303 KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLG 362
Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCA-ALVDMYAKCKVIDDARQLFDQMPTRDLV------ 225
DI R + L+ G ++ A+V MYAK ++D AR +F+ +P D++
Sbjct: 363 DIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTII 422
Query: 226 ------------------------------TWTVMIGA-------------------NKF 236
TW ++ A N
Sbjct: 423 SGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL 482
Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
LDV + T++ DMY KCG ++ A +F ++ + N + W+ +IA +G+HG G+KA+ LF
Sbjct: 483 YLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
ML V P+ ITFV+LL ACSH+GLV+EG F M D+ + P +KHY CMVD+ GRAG
Sbjct: 543 MLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAG 602
Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
+L+ ALK I+SMS++ D +WGALL ACR+H NVDL ++A++ L E +P++ G++VLLSN
Sbjct: 603 QLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSN 662
Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
+YA+AG+W+ V +IR + + L+K PGW+ +EV+NK+ F G+ THP EE+YR L
Sbjct: 663 MYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTA 722
Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
L KL++ GY+PD F L DV+++ K L SHSE+LAIAF LIATP T IRI KNLRV
Sbjct: 723 LQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRV 782
Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
CGDCHS K +S IT R IIVRD+NRFHHF+ G CSC DYW
Sbjct: 783 CGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 191/415 (46%), Gaps = 64/415 (15%)
Query: 59 DPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM 118
D + F S L +CR + ++H + G + ++ VA L+++Y+ +KA+ +A LF+ M
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEM 211
Query: 119 KERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
RD SW+ M+ G+ + + T +R +DS T+ ++ AC + D G
Sbjct: 212 PVRDMGSWNAMISGYCQSGNAKEAL-TLSNGLRA---MDSVTVVSLLSACTEAGDFNRGV 267
Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
IH +K GL+ + FV L+D+YA+ + D +++FD+M RDL++W +I A
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327
Query: 234 --------------NKFLLDVILGTAVIDMYAKCGSIDSARE------------------ 261
++ D + ++ + ++ G I + R
Sbjct: 328 QPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIG 387
Query: 262 ------------------IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM-LSSRV 302
+F+ + +VISW+ +I+ Y +G +A++++ +M +
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEI 447
Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
N+ T+VS+L ACS G + +G++L + + + DV T + D+ G+ GRL++AL
Sbjct: 448 AANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDAL 506
Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER--QPQNPGHYVLLS 415
L + + W L+ H + + A M K +L+ +P + LLS
Sbjct: 507 SLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 147/304 (48%), Gaps = 58/304 (19%)
Query: 70 CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
C N+ + +HA++V + N+ ++ KL+ +Y + A F+ ++ RD +W++M
Sbjct: 64 CTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLM 123
Query: 130 VGGFSKV---ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLK 186
+ G+ + ++ I CF F + G+ D T P V++ACR ++ G IH + LK
Sbjct: 124 ISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKACRT---VIDGNKIHCLALK 178
Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLL-- 238
G D +V A+L+ +Y++ K + +AR LFD+MP RD+ +W MI G K L
Sbjct: 179 FGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL 238
Query: 239 ------------------------------------------DVILGTAVIDMYAKCGSI 256
++ + +ID+YA+ G +
Sbjct: 239 SNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRL 298
Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
+++FDRM +++ISW+++I AY + Q +A+ LF M SR+ P+ +T +SL
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358
Query: 317 SHTG 320
S G
Sbjct: 359 SQLG 362
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 114/247 (46%), Gaps = 34/247 (13%)
Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLDIDQFVCAA--LVDMYA---KCK 207
M+ +++LP I C+ GR VL+S G I +F +A L D + + K
Sbjct: 1 MKFGTFSLPRQIPTCKG------GRFTR--VLQSIGSVIREFSASANALQDCWKNGNESK 52
Query: 208 VIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
IDD LF + + +K + +V + ++++Y G++ AR FD +
Sbjct: 53 EIDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHI 112
Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPM-MLSSRVLPNRITFVSLLYACSHTGLVEEG 325
+ ++V +W+ MI+ YG G + + F + MLSS + P+ TF S+L AC V +G
Sbjct: 113 QNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDG 169
Query: 326 LRL------FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
++ F MWD + ++ L R + A L + M V +D G W A
Sbjct: 170 NKIHCLALKFGFMWDVYVA-------ASLIHLYSRYKAVGNARILFDEMPV-RDMGSWNA 221
Query: 380 LL-GACR 385
++ G C+
Sbjct: 222 MISGYCQ 228
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/581 (40%), Positives = 333/581 (57%), Gaps = 66/581 (11%)
Query: 63 FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
F ++ +C ++F I +Q H Q G +++ V++ L+ +Y+ L DA +F+ +
Sbjct: 79 FPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP 138
Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKD 173
+R+ VSW+ M+ G+ + ++ F++ + M LDS L VI AC
Sbjct: 139 KRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPA 198
Query: 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC---------KVID-------------- 210
+ IH V+K G D V L+D YAK K+ D
Sbjct: 199 KGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIM 258
Query: 211 ----------DARQLFDQMPTRDLVTWTVMIGANKFLL---------------------- 238
+A ++F ++ +VT+ + + L
Sbjct: 259 SVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGL 318
Query: 239 --DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
DVI+GT++IDMY KCG +++AR+ FDRM+ KNV SW+AMIA YG HG KAL+LFP
Sbjct: 319 EDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPA 378
Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
M+ S V PN ITFVS+L ACSH GL EG R F++M F V P ++HY CMVDLLGRAG
Sbjct: 379 MIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAG 438
Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416
L +A LI+ M ++ D +W +LL ACRIHKNV+LAE++ L E N G+Y+LLS+
Sbjct: 439 FLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSH 498
Query: 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVT 476
+YA+AGRW+DV ++R +M R L K PG++ +E+ ++H F +GD HPQ E+IY L
Sbjct: 499 IYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAE 558
Query: 477 LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRV 536
L+ KL AGY+ +T+ HDVDEE K L HSEKLAIAFG++ T G+ + ++KNLRV
Sbjct: 559 LNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRV 618
Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
C DCH+ IK +S I R +VRDA RFHHF+ G CSC DYW
Sbjct: 619 CSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 144/363 (39%), Gaps = 78/363 (21%)
Query: 105 HKALTDAHALFNGMKER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
H + LFN ++ D SW+ ++ ++ D F + + + P
Sbjct: 22 HTERQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPC 81
Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
I+AC DI G+ H G D FV +AL+ MY+ C ++DAR++FD++P R+
Sbjct: 82 AIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN 141
Query: 224 LVTWTVMIGA---NKFLLDVIL-------------------GTAVIDMYAKCGSIDSA-- 259
+V+WT MI N LD + ++ + + C + +
Sbjct: 142 IVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201
Query: 260 -----REIFDRMRQKNVISWSAMIAAYGYHGQGKKAL----------------------- 291
+ R + V + ++ AY G+G A+
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261
Query: 292 ----------DLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDD---FA 337
++F ++ ++V+ N IT ++L A SH+G LR+ + D
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSG----ALRIGKCIHDQVIRMG 317
Query: 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397
+ DV T ++D+ + GR++ A K + M K+ W A++ +H + AA
Sbjct: 318 LEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMHGH------AA 370
Query: 398 KSL 400
K+L
Sbjct: 371 KAL 373
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/602 (37%), Positives = 329/602 (54%), Gaps = 101/602 (16%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+Q+H V + N+ V N L+ +YA + +A+ +F+ M +D VSW+ MV G+S++
Sbjct: 249 KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQI 308
Query: 137 ADFINCFETF-----------------------------------REFIRCGMQLDSYTL 161
F + F R+ + G++ + TL
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368
Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDI-------DQFVCAALVDMYAKCKVIDDARQ 214
V+ C ++ G+ IH +K +D+ + V L+DMYAKCK +D AR
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428
Query: 215 LFDQMPT--RDLVTWTVMIG-------ANKFL---------------------------- 237
+FD + RD+VTWTVMIG ANK L
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488
Query: 238 ----------------------LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
+ + + +IDMYAKCGSI AR +FD M KN ++W+
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548
Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
+++ YG HG G++AL +F M + +T + +LYACSH+G++++G+ F+ M
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTV 608
Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
F V P +HY C+VDLLGRAGRL+ AL+LIE M +E +W A L CRIH V+L E
Sbjct: 609 FGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEY 668
Query: 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIH 455
AA+ + E + G Y LLSN+YANAGRW+DV +IR LM + +KK PG +W+E
Sbjct: 669 AAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT 728
Query: 456 QFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAI 515
F VGD THP ++EIY++L+ ++++ GY+P+T F LHDVD+E K L+ HSEKLA+
Sbjct: 729 TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLAL 788
Query: 516 AFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575
A+G++ TP+G IRI KNLRVCGDCH+ ++S I II+RD++RFHHF+ G+CSC+
Sbjct: 789 AYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKG 848
Query: 576 YW 577
YW
Sbjct: 849 YW 850
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 169/359 (47%), Gaps = 41/359 (11%)
Query: 69 SCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
+C I +R HA + G ++N+ V N L+ +Y+ ++L+DA +F+ M D VS
Sbjct: 136 ACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVS 195
Query: 126 WSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184
W+ ++ ++K+ E F G + D+ TL V+ C +G+ +H
Sbjct: 196 WNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFA 255
Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244
+ S + + FV LVDMYAKC ++D+A +F M +D+V+W M+
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG----------- 304
Query: 245 AVIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
Y++ G + A +F++M+++ +V++WSA I+ Y G G +AL + MLSS
Sbjct: 305 -----YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSS 359
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH-----------YTCMV 349
+ PN +T +S+L C+ G + G + +A++ + ++
Sbjct: 360 GIKPNEVTLISVLSGCASVGALMHGKEIHC-----YAIKYPIDLRKNGHGDENMVINQLI 414
Query: 350 DLLGRAGRLDEALKLIESMSV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
D+ + ++D A + +S+S E+D W ++G H + + A + E Q
Sbjct: 415 DMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQT 473
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 113/288 (39%), Gaps = 35/288 (12%)
Query: 12 SISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISS--LLS 69
S+S K R + T HG + M DCQ TR P F S L++
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEM-FEEDCQ-TR---PNAFTISCALVA 486
Query: 70 CRNIFQIR---QVHAQIVAGG-TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
C ++ +R Q+HA + L V+N L+ +YA +++DA +F+ M ++ V+
Sbjct: 487 CASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT 546
Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD--- 182
W+ ++ G+ F E R G +LD TL V+ AC I G +
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMK 606
Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVI 241
V + + C LVD+ + ++ A +L ++MP V W + + V
Sbjct: 607 TVFGVSPGPEHYAC--LVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664
Query: 242 LG------------------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
LG T + ++YA G I MR K V
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGV 712
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/554 (39%), Positives = 310/554 (55%), Gaps = 57/554 (10%)
Query: 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
Q+H+ G ++ V + +Y+ + ALF ++ D V+++ M+ G++
Sbjct: 242 QIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNG 301
Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
+ F+E + G +L S TL ++ +++ IH LKS V
Sbjct: 302 ETELSLSLFKELMLSGARLRSSTLVSLVPVS---GHLMLIYAIHGYCLKSNFLSHASVST 358
Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDL--------------------------------- 224
AL +Y+K I+ AR+LFD+ P + L
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSP 418
Query: 225 --VTWTVMIGA-------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIF 263
VT T ++ A F + + TA+I MYAKCGSI AR +F
Sbjct: 419 NPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478
Query: 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE 323
D M +KN ++W+ MI+ YG HGQG++AL++F ML+S + P +TF+ +LYACSH GLV+
Sbjct: 479 DLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVK 538
Query: 324 EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
EG +F+SM + P VKHY CMVD+LGRAG L AL+ IE+MS+E +W LLGA
Sbjct: 539 EGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGA 598
Query: 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIP 443
CRIHK+ +LA ++ L E P N G++VLLSN+++ + A +R +R+L K P
Sbjct: 599 CRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAP 658
Query: 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKV 503
G+T IE+ H F+ GD +HPQ +EIY L L K+ AGY P+T LHDV+EE +
Sbjct: 659 GYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERE 718
Query: 504 GNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRF 563
+ HSE+LAIAFGLIAT GT IRI+KNLRVC DCH+ K +S IT RVI+VRDANRF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRF 778
Query: 564 HHFEGGACSCRDYW 577
HHF+ G CSC DYW
Sbjct: 779 HHFKDGVCSCGDYW 792
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 167/378 (44%), Gaps = 54/378 (14%)
Query: 62 FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
F IS+ R+ R +H Q V G + L++ + ++ +Y + DA +F+ M E+
Sbjct: 124 FAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183
Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
D++ W+ M+ G+ K ++ + FR+ I +LD+ TL ++ A + +++ +G I
Sbjct: 184 DTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI 243
Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
H + K+G +V + +Y+KC I LF + D+V + MI
Sbjct: 244 HSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGET 303
Query: 232 -------------GA-----------------------------NKFLLDVILGTAVIDM 249
GA + FL + TA+ +
Sbjct: 304 ELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTV 363
Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
Y+K I+SAR++FD +K++ SW+AMI+ Y +G + A+ LF M S PN +T
Sbjct: 364 YSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTI 423
Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
+L AC+ G + G + + + T ++ + + G + EA +L + M+
Sbjct: 424 TCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMT 482
Query: 370 VEKDEGLWGALLGACRIH 387
+K+E W ++ +H
Sbjct: 483 -KKNEVTWNTMISGYGLH 499
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 87/370 (23%), Positives = 152/370 (41%), Gaps = 65/370 (17%)
Query: 72 NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
+I + Q HAQI+ G ++ + KL + A+ A +F ++ D ++V++
Sbjct: 32 SISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR 91
Query: 132 GFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
GFS + F + ++ +S T F I A +D GR+IH + G D
Sbjct: 92 GFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD 151
Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK--------------- 235
+ + + +V MY K ++DAR++FD+MP +D + W MI +
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211
Query: 236 -----------FLLDVI----------LG-------------------TAVIDMYAKCGS 255
LLD++ LG T I +Y+KCG
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271
Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
I +F R+ ++++++AMI Y +G+ + +L LF ++ S T VSL+
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV 331
Query: 316 CSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD 373
H L+ G L S+ +V T + + + ++ A KL + S EK
Sbjct: 332 SGHLMLIYAIHGYCLKSNFLSHASVS------TALTTVYSKLNEIESARKLFDE-SPEKS 384
Query: 374 EGLWGALLGA 383
W A++
Sbjct: 385 LPSWNAMISG 394
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 31/165 (18%)
Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
F D+ L T + + G+I AR+IF +++ +V ++ ++ + + +L +F
Sbjct: 48 FRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFA 107
Query: 296 MMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD---- 350
+ S L PN T+ + A S G R DD A R V H +VD
Sbjct: 108 HLRKSTDLKPNSSTYAFAISAAS-------GFR------DDRAGR--VIHGQAVVDGCDS 152
Query: 351 --LLG--------RAGRLDEALKLIESMSVEKDEGLWGALLGACR 385
LLG + R+++A K+ + M EKD LW ++ R
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYR 196
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 218/577 (37%), Positives = 324/577 (56%), Gaps = 58/577 (10%)
Query: 58 VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
D +F+ + L C + + Q R VHA I+ ++++ N LL +YA +L +A +
Sbjct: 58 ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV 117
Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
F M +RD V+W+ ++ G+S+ + F + +R G + +TL VI+A +
Sbjct: 118 FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 177
Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
G +H +K G D + V +AL+D+Y + ++DDA+ +FD + +R+ V+W +I
Sbjct: 178 CCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGH 237
Query: 232 ----GANKFL-----------------------------------------------LDV 240
G K L L
Sbjct: 238 ARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVA 297
Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
G ++DMYAK GSI AR+IFDR+ +++V+SW++++ AY HG GK+A+ F M
Sbjct: 298 FAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
+ PN I+F+S+L ACSH+GL++EG + M D + P+ HY +VDLLGRAG L+
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNR 416
Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
AL+ IE M +E +W ALL ACR+HKN +L AA+ + E P +PG +V+L N+YA+
Sbjct: 417 ALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYAS 476
Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
GRW D A++R M +KK P +W+E+EN IH F D HPQ EEI R + K
Sbjct: 477 GGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAK 536
Query: 481 LELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
++ GY+PDT+ + VD++ + NL HSEK+A+AF L+ TP G+ I I KN+RVCGDC
Sbjct: 537 IKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDC 596
Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
H+ IK S + R IIVRD NRFHHF+ G CSC+DYW
Sbjct: 597 HTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/558 (37%), Positives = 319/558 (57%), Gaps = 61/558 (10%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGF 133
+QVH + +++ V+ L+ Y+ ++ + +A LF ER D V+W+ M+ G+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILF----ERHNFDLVAWNAMMAGY 492
Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
++ D + F + G + D +TL V + C I G+ +H +KSG D+D
Sbjct: 493 TQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDL 552
Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--------------------- 232
+V + ++DMY KC + A+ FD +P D V WT MI
Sbjct: 553 WVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLM 612
Query: 233 -----------------------------ANKFLL----DVILGTAVIDMYAKCGSIDSA 259
AN L D +GT+++DMYAKCGSID A
Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672
Query: 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
+F R+ N+ +W+AM+ HG+GK+ L LF M S + P+++TF+ +L ACSH+
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732
Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
GLV E + SM D+ ++P+++HY+C+ D LGRAG + +A LIESMS+E ++
Sbjct: 733 GLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRT 792
Query: 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
LL ACR+ + + + A LLE +P + YVLLSN+YA A +W ++ R +M ++
Sbjct: 793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKV 852
Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
KK PG++WIEV+NKIH F V D ++ Q+E IYR + + ++ GY+P+T+F L DV+E
Sbjct: 853 KKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912
Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
E K LY HSEKLA+AFGL++TP T IR++KNLRVCGDCH+ +K+++ + R I++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
Query: 560 ANRFHHFEGGACSCRDYW 577
ANRFH F+ G CSC DYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 64/363 (17%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+QVH + G L V+N L+ +Y + A +F+ M ERD +SW+ ++ G ++
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD-IVMGRLIHDIVLKSGLDIDQFV 195
+ F + +RCG++ D YT+ V++A + + + + +H +K D FV
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454
Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----------------------- 232
AL+D Y++ + + +A LF++ DLV W M+
Sbjct: 455 STALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGE 513
Query: 233 -ANKFLLDVILGT------------------------------AVIDMYAKCGSIDSARE 261
++ F L + T ++DMY KCG + +A+
Sbjct: 514 RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQF 573
Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
FD + + ++W+ MI+ +G+ ++A +F M VLP+ T +L A S
Sbjct: 574 AFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA 633
Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA---LKLIESMSVEKDEGLWG 378
+E+G ++ ++ D T +VD+ + G +D+A K IE M++ W
Sbjct: 634 LEQGRQIHANAL-KLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA----WN 688
Query: 379 ALL 381
A+L
Sbjct: 689 AML 691
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 122/281 (43%), Gaps = 33/281 (11%)
Query: 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
F+ + ++ ++ + HA+I+ + N L+ +Y+ +LT A +F+ M +RD
Sbjct: 45 FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104
Query: 123 SVSWSVMVGGFSK-----VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
VSW+ ++ +++ V + F FR + + TL +++ C +
Sbjct: 105 LVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWAS 164
Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
H K GLD D+FV ALV++Y K + + + LF++MP RD+V W +M+ A
Sbjct: 165 ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA---Y 221
Query: 238 LDVILGTAVIDMYAK-------------------------CGSIDSAREIFDRMRQKNVI 272
L++ ID+ + G + S D +I
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEII 281
Query: 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313
+ ++ Y + GQ L F M+ S V +++TF+ +L
Sbjct: 282 FRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILML 322
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 7/143 (4%)
Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG-----KKALDLFPMMLSS 300
+I MY+KCGS+ AR +FD+M ++++SW++++AAY + ++A LF ++
Sbjct: 80 LISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQD 139
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
V +R+T +L C H+G V F + D +V++ + G++ E
Sbjct: 140 VVYTSRMTLSPMLKLCLHSGYVWAS-ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKE 198
Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
L E M +D LW +L A
Sbjct: 199 GKVLFEEMPY-RDVVLWNLMLKA 220
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 45/267 (16%)
Query: 94 VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
VA L+ IY + + LF M RD V W++M+ + ++ + F G
Sbjct: 182 VAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSG 241
Query: 154 MQLDSYTLPFVIRACRDRKDIVM---------GRLIHDIVLKSGLDIDQFVCAALVDMYA 204
+ + TL + R D D + +I+ ++ + +++ +
Sbjct: 242 LNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNK-GLSEYLHSGQYSALL 300
Query: 205 KCKVIDDARQLFDQMPTRDL----VTWTVMIG-----------------ANKFLLDVIL- 242
KC F M D+ VT+ +M+ A K LD++L
Sbjct: 301 KC---------FADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLT 351
Query: 243 -GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
++I+MY K AR +FD M ++++ISW+++IA +G +A+ LF +L
Sbjct: 352 VSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCG 411
Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRL 328
+ P++ T S+L A S + EGL L
Sbjct: 412 LKPDQYTMTSVLKAASS---LPEGLSL 435
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/604 (38%), Positives = 346/604 (57%), Gaps = 64/604 (10%)
Query: 34 GHEQNPMNPRVPMQMGPD-CQFTRSVDPKFF-ISSLLSCRNIFQI----RQVHAQIVAGG 87
G+ QN M R+ ++M C+ ++ P F I S+L + ++ +++H + G
Sbjct: 210 GYSQNGM-ARMALEMVKSMCE--ENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSG 266
Query: 88 TLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFR 147
+ + ++ L+ +YA +L A LF+GM ER+ VSW+ M+ + + + F+
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326
Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
+ + G++ ++ + AC D D+ GR IH + ++ GLD + V +L+ MY KCK
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCK 386
Query: 208 VID-------------------------------DARQLFDQMPTR----DLVTWTVMIG 232
+D DA F QM +R D T+ +I
Sbjct: 387 EVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446
Query: 233 ANKFL-----------------LD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
A L LD V + TA++DMYAKCG+I AR IFD M +++V +
Sbjct: 447 AIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTT 506
Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
W+AMI YG HG GK AL+LF M + PN +TF+S++ ACSH+GLVE GL+ F M
Sbjct: 507 WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK 566
Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
+++++ + HY MVDLLGRAGRL+EA I M V+ ++GA+LGAC+IHKNV+ A
Sbjct: 567 ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFA 626
Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
E AA+ L E P + G++VLL+N+Y A W+ V ++R M R+ L+K PG + +E++N+
Sbjct: 627 EKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNE 686
Query: 454 IHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKL 513
+H F G + HP S++IY L L ++ AGY+PDTN L V+ +VK L +HSEKL
Sbjct: 687 VHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKL 745
Query: 514 AIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSC 573
AI+FGL+ T GT I + KNLRVC DCH+ K++S +T R I+VRD RFHHF+ GACSC
Sbjct: 746 AISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSC 805
Query: 574 RDYW 577
DYW
Sbjct: 806 GDYW 809
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 170/349 (48%), Gaps = 55/349 (15%)
Query: 70 CRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
C ++ ++RQ+ + G KL+ ++ + ++ +A +F + + +V + M
Sbjct: 47 CSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTM 106
Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
+ GF+KV+D + F ++ Y ++++ C D ++ +G+ IH +++KSG
Sbjct: 107 LKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGF 166
Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVI-- 241
+D F L +MYAKC+ +++AR++FD+MP RDLV+W ++ G + L+++
Sbjct: 167 SLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKS 226
Query: 242 ----------------------------------------------LGTAVIDMYAKCGS 255
+ TA++DMYAKCGS
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGS 286
Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
+++AR++FD M ++NV+SW++MI AY + K+A+ +F ML V P ++ + L+A
Sbjct: 287 LETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHA 346
Query: 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
C+ G +E G R + + + +V ++ + + +D A +
Sbjct: 347 CADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/566 (37%), Positives = 321/566 (56%), Gaps = 56/566 (9%)
Query: 68 LSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS 125
L RN + + + H +I+ ++ + N L+ Y+ + A +F+GM ER VS
Sbjct: 70 LCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVS 129
Query: 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
W+ M+G +++ + F E G + +T+ V+ AC D + + +H + +
Sbjct: 130 WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSV 189
Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA------------ 233
K+ +D++ +V AL+D+YAKC +I DA Q+F+ M + VTW+ M+
Sbjct: 190 KTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALL 249
Query: 234 ------------NKFLL------------------------------DVILGTAVIDMYA 251
N+F L +V + ++ +DMYA
Sbjct: 250 LYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYA 309
Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
KCGS+ + IF +++KN+ W+ +I+ + H + K+ + LF M + PN +TF S
Sbjct: 310 KCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSS 369
Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE 371
LL C HTGLVEEG R F M + + P+V HY+CMVD+LGRAG L EA +LI+S+ +
Sbjct: 370 LLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFD 429
Query: 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
+WG+LL +CR++KN++LAE+AA+ L E +P+N G++VLLSN+YA +W+++AK R
Sbjct: 430 PTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSR 489
Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491
L+ +KK+ G +WI++++K+H FSVG+S HP+ EI L L K GY P
Sbjct: 490 KLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVE 549
Query: 492 FELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAIT 551
ELHDV+ K L HSEKLA+ FGL+ PE + +RIMKNLR+C DCH F+K S T
Sbjct: 550 HELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMAT 609
Query: 552 RRVIIVRDANRFHHFEGGACSCRDYW 577
RR IIVRD NRFHHF G CSC D+W
Sbjct: 610 RRFIIVRDVNRFHHFSDGHCSCGDFW 635
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 123/278 (44%), Gaps = 56/278 (20%)
Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
+++ C ++ + H +++ L+ D + L++ Y+KC ++ ARQ+FD M R
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 224 LVTWTVMIGA------------------------NKFLLDVIL----------------- 242
LV+W MIG ++F + +L
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHC 186
Query: 243 -------------GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
GTA++D+YAKCG I A ++F+ M+ K+ ++WS+M+A Y + ++
Sbjct: 187 LSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEE 246
Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349
AL L+ + N+ T S++ ACS+ + EG ++ + + +V + V
Sbjct: 247 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKS-GFGSNVFVASSAV 305
Query: 350 DLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
D+ + G L E+ +I S EK+ LW ++ H
Sbjct: 306 DMYAKCGSLRESY-IIFSEVQEKNLELWNTIISGFAKH 342
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/558 (38%), Positives = 316/558 (56%), Gaps = 59/558 (10%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+Q+HA V G + V N++L Y+ H + + LF+ M E D VS++V++ +S+
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
+ FRE ++C M D PF ++ + + MGR +H L + D
Sbjct: 330 DQYEASLHFFRE-MQC-MGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387
Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV--------------------MIGAN 234
V +LVDMYAKC++ ++A +F +P R V+WT M G+N
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447
Query: 235 ----------------------------KFLL------DVILGTAVIDMYAKCGSIDSAR 260
F++ +V G+ ++DMYAKCGSI A
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507
Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
++F+ M +N +SW+A+I+A+ +G G+ A+ F M+ S + P+ ++ + +L ACSH G
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCG 567
Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
VE+G F +M + + P KHY CM+DLLGR GR EA KL++ M E DE +W ++
Sbjct: 568 FVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSV 627
Query: 381 LGACRIHKNVDLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439
L ACRIHKN LAE AA+ L + ++ YV +SN+YA AG W+ V ++ M R +
Sbjct: 628 LNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGI 687
Query: 440 KKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDE 499
KK+P ++W+EV +KIH FS D THP +EI R + L+ ++E GY PDT+ + DVDE
Sbjct: 688 KKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDE 747
Query: 500 EVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRD 559
++K+ +L HSE+LA+AF LI+TPEG I +MKNLR C DCH+ IK +S I +R I VRD
Sbjct: 748 QMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRD 807
Query: 560 ANRFHHFEGGACSCRDYW 577
+RFHHF G CSC DYW
Sbjct: 808 TSRFHHFSEGVCSCGDYW 825
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 163/371 (43%), Gaps = 72/371 (19%)
Query: 76 IRQVHAQIVAGGTLTN--LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF 133
+ QVHA V G TN L V+N LL Y + L A LF + E+DSV+++ ++ G+
Sbjct: 166 VGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGY 225
Query: 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ 193
K + F + + G Q +T V++A D +G+ +H + + +G D
Sbjct: 226 EKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA 285
Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-------------------- 233
V ++D Y+K + + R LFD+MP D V++ V+I +
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCM 345
Query: 234 -------------------------NKFLLDVILGTA---------VIDMYAKCGSIDSA 259
+ +L TA ++DMYAKC + A
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEA 405
Query: 260 REIFDRMRQKNVISWSAMIAAY---GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
IF + Q+ +SW+A+I+ Y G HG G L LF M S + ++ TF ++L A
Sbjct: 406 ELIFKSLPQRTTVSWTALISGYVQKGLHGAG---LKLFTKMRGSNLRADQSTFATVLKAS 462
Query: 317 SHTGLVEEGLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
+ + G +L + F +R +V + +VD+ + G + +A+++ E M ++
Sbjct: 463 ASFASLLLGKQLHA-----FIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP-DR 516
Query: 373 DEGLWGALLGA 383
+ W AL+ A
Sbjct: 517 NAVSWNALISA 527
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/398 (19%), Positives = 159/398 (39%), Gaps = 71/398 (17%)
Query: 46 MQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105
++ G D RS F + LL + R+V+ ++ N + N ++ +
Sbjct: 40 IKTGFDTDTCRS---NFIVEDLLRRGQVSAARKVYDEM----PHKNTVSTNTMISGHVKT 92
Query: 106 KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR---CGMQLDSYTLP 162
++ A LF+ M +R V+W++++G +++ + F F+ FR+ R C + D T
Sbjct: 93 GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLP-DHVTFT 151
Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV--IDDARQLFDQMP 220
++ C D +H +K G D + F+ + V + + C+V +D A LF+++P
Sbjct: 152 TLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIP 211
Query: 221 TRDLVTWTVMI---------------------------------------GANKFLL--- 238
+D VT+ +I G + F L
Sbjct: 212 EKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQ 271
Query: 239 ------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ 286
D +G ++D Y+K + R +FD M + + +S++ +I++Y Q
Sbjct: 272 LHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQ 331
Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY- 345
+ +L F M F ++L ++ ++ G +L A + H
Sbjct: 332 YEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHVG 389
Query: 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
+VD+ + +EA + +S+ ++ W AL+
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALISG 426
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL 237
R + ++K+G D D +V+ + + AR+++D+MP ++ V+ MI
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISG---- 88
Query: 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297
+ K G + SAR++FD M + V++W+ ++ Y + +A LF M
Sbjct: 89 ------------HVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136
Query: 298 L--SSRVLPNRITFVSLLYACS 317
SS LP+ +TF +LL C+
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCN 158
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/539 (40%), Positives = 319/539 (59%), Gaps = 33/539 (6%)
Query: 69 SCRNIFQI-RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
SC I R++H G + L V N L+ +Y L++A + + M RD VSW+
Sbjct: 151 SCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWN 210
Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK-DIVMGRLIHDIVLK 186
+V G+++ F + E RE + D+ T+ ++ A + + VM + D+ K
Sbjct: 211 SLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVM--YVKDMFFK 268
Query: 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR----DLVTWTVMIGA--------- 233
G ++ +Y K + +A +L+ +M D V+ T ++ A
Sbjct: 269 MGKK-SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327
Query: 234 ----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
K + +++L A+IDMYAKCG ++ AR++F+ M+ ++V+SW+AMI+AYG+
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGF 387
Query: 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
G+G A+ LF + S ++P+ I FV+ L ACSH GL+EEG F M D + + P ++
Sbjct: 388 SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE 447
Query: 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
H CMVDLLGRAG++ EA + I+ MS+E +E +WGALLGACR+H + D+ +AA L +
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507
Query: 404 QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDST 463
P+ G+YVLLSN+YA AGRW++V IR++M + LKK PG + +EV IH F VGD +
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567
Query: 464 HPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATP 523
HPQS+EIYR L L +K++ GY+PD+ LHDV+EE K +L HSEKLAI F L+ T
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627
Query: 524 E-----GTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
E IRI KNLR+CGDCH K +S IT R II+RD NRFH F G CSC DYW
Sbjct: 628 EEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 160/333 (48%), Gaps = 23/333 (6%)
Query: 72 NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
+I +R VH++I+ N + KL+ YA K + A +F+ + ER+ + +VM+
Sbjct: 54 DIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIR 113
Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
+ + + F C ++ D YT P V++AC IV+GR IH K GL
Sbjct: 114 SYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSS 173
Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---GANKFL---LDVILGTA 245
FV LV MY KC + +AR + D+M RD+V+W ++ N+ L+V
Sbjct: 174 TLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREME 233
Query: 246 VIDMYAKCGSIDS---------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
+ + G++ S +++F +M +K+++SW+ MI Y + +A
Sbjct: 234 SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293
Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
++L+ M + P+ ++ S+L AC T + G ++ + + + P++ ++D
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYI-ERKKLIPNLLLENALID 352
Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
+ + G L++A + E+M +D W A++ A
Sbjct: 353 MYAKCGCLEKARDVFENMK-SRDVVSWTAMISA 384
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/527 (39%), Positives = 310/527 (58%), Gaps = 49/527 (9%)
Query: 53 QFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
+FT + K ++S + ++ + +++HA + G +++ + L+ +YA + A
Sbjct: 178 RFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYAS 237
Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR--CGMQLDSYTLPFVIRACRD 170
+F GM R+ VSWS M+ ++K TFRE +R +S T+ V++AC
Sbjct: 238 YVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACAS 297
Query: 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230
+ G+LIH +L+ GLD
Sbjct: 298 LAALEQGKLIHGYILRRGLDS--------------------------------------- 318
Query: 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290
+L VI +A++ MY +CG ++ + +FDRM ++V+SW+++I++YG HG GKKA
Sbjct: 319 ------ILPVI--SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
+ +F ML++ P +TFVS+L ACSH GLVEEG RLF +MW D ++P ++HY CMVD
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410
LLGRA RLDEA K+++ M E +WG+LLG+CRIH NV+LAE A++ L +P+N G+
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490
Query: 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEI 470
YVLL+++YA A W +V +++ L+ R L+K+PG W+EV K++ F D +P E+I
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQI 550
Query: 471 YRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRI 530
+ LV L+E ++ GYIP T L++++ E K + HSEKLA+AFGLI T +G IRI
Sbjct: 551 HAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRI 610
Query: 531 MKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
KNLR+C DCH F K +S + I+VRD NRFH F+ G CSC DYW
Sbjct: 611 TKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 62/288 (21%)
Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
T +I C R + +H +L +G D D F+ L+ MY+ +D AR++FD+
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 220 PTRDLVTWTVM------------------------IGANKFLLDVILGTAV--------- 246
R + W + + +++F +L V
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHL 198
Query: 247 -------------------------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
+DMYA+ G +D A +F M +NV+SWSAMIA Y
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258
Query: 282 GYHGQGKKALDLFPMML--SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
+G+ +AL F M+ + PN +T VS+L AC+ +E+G +L +
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLD 317
Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
+ + +V + GR G+L+ ++ + M ++D W +L+ + +H
Sbjct: 318 SILPVISALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVH 364
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/645 (36%), Positives = 339/645 (52%), Gaps = 125/645 (19%)
Query: 58 VDPKFF-----ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--------- 103
++P F ++S+ + R + ++VH+ IV G N+ V+N LL +YA
Sbjct: 142 IEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAK 201
Query: 104 -------------------LHKALTD---AHALFNGMKERDSVSWSVMVGGFSKVADFIN 141
LH + A A F M ERD V+W+ M+ GF++ +
Sbjct: 202 FVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLR 261
Query: 142 CFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
+ F + +R + D +TL V+ AC + + + +G+ IH ++ +G DI V AL+
Sbjct: 262 ALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321
Query: 201 DMYAKCKVID---------------------------------DARQLFDQMPTRDLVTW 227
MY++C ++ A+ +F + RD+V W
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAW 381
Query: 228 TV--------------------MIGA----NKFLL------------------------- 238
T M+G N + L
Sbjct: 382 TAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVK 441
Query: 239 -----DVILGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALD 292
V + A+I MYAK G+I SA FD +R +++ +SW++MI A HG ++AL+
Sbjct: 442 SGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALE 501
Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
LF ML + P+ IT+V + AC+H GLV +G + F M D + P + HY CMVDL
Sbjct: 502 LFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLF 561
Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
GRAG L EA + IE M +E D WG+LL ACR+HKN+DL ++AA+ LL +P+N G Y
Sbjct: 562 GRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYS 621
Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
L+N+Y+ G+W++ AKIR M R+KK G++WIEV++K+H F V D THP+ EIY
Sbjct: 622 ALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYM 681
Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
+ + ++++ GY+PDT LHD++EEVK L HSEKLAIAFGLI+TP+ T +RIMK
Sbjct: 682 TMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMK 741
Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
NLRVC DCH+ IK +S + R IIVRD RFHHF+ G CSCRDYW
Sbjct: 742 NLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 146/295 (49%), Gaps = 22/295 (7%)
Query: 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
N +L Y+ + F+ + +RDSVSW+ M+ G+ + + + ++ G++
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
+TL V+ + + + G+ +H ++K GL + V +L++MYAKC A+ +
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203
Query: 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWS 275
FD+M RD+ +W MI ++ + G +D A F++M ++++++W+
Sbjct: 204 FDRMVVRDISSWNAMIA----------------LHMQVGQMDLAMAQFEQMAERDIVTWN 247
Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSM-W 333
+MI+ + G +ALD+F ML +L P+R T S+L AC++ + G ++ S +
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307
Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVE--KDEGLWGALLGACRI 386
F + V ++ + R G ++ A +LIE + K EG L G ++
Sbjct: 308 TGFDISGIV--LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKL 360
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 18/227 (7%)
Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236
+L+H V+KSGL ++ L+++Y+K AR+LFD+MP R +W ++ A
Sbjct: 33 AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA--- 89
Query: 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPM 296
Y+K G +DS E FD++ Q++ +SW+ MI Y GQ KA+ +
Sbjct: 90 -------------YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136
Query: 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356
M+ + P + T ++L + + T +E G ++ S + +R +V ++++ + G
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIV-KLGLRGNVSVSNSLLNMYAKCG 195
Query: 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403
A + + M V +D W A++ +DLA + + ER
Sbjct: 196 DPMMAKFVFDRMVV-RDISSWNAMIALHMQVGQMDLAMAQFEQMAER 241
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/561 (38%), Positives = 327/561 (58%), Gaps = 59/561 (10%)
Query: 75 QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
Q++QVHA ++ G + + KL+ + +A+ H LF + D ++ ++ S
Sbjct: 24 QLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTS 83
Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
K+ ++C +R + + +YT VI++C D + +G+ +H + SG +D +
Sbjct: 84 KLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTY 143
Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTR-------------------------------- 222
V AALV Y+KC ++ ARQ+FD+MP +
Sbjct: 144 VQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG 203
Query: 223 ---DLVTWTVMIGA-------------NKFL------LDVILGTAVIDMYAKCGSIDSAR 260
D T+ ++ A ++++ L+V LGTA+I++Y++CG + AR
Sbjct: 204 FEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAR 263
Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYACSHT 319
E+FD+M++ NV +W+AMI+AYG HG G++A++LF M +PN +TFV++L AC+H
Sbjct: 264 EVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHA 323
Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE---GL 376
GLVEEG ++ M + + P V+H+ CMVD+LGRAG LDEA K I + L
Sbjct: 324 GLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPAL 383
Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
W A+LGAC++H+N DL AK L+ +P NPGH+V+LSN+YA +G+ +V+ IRD M R
Sbjct: 384 WTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMR 443
Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
L+K G++ IEVENK + FS+GD +H ++ EIYR L TL + + GY P + +H
Sbjct: 444 NNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQ 503
Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
V+EE K L HSEKLA+AFGL+ T + I I+KNLR+C DCHS K++S ++ R I
Sbjct: 504 VEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICEDCHSAFKYISIVSNRQIT 562
Query: 557 VRDANRFHHFEGGACSCRDYW 577
VRD RFHHF+ G+CSC DYW
Sbjct: 563 VRDKLRFHHFQNGSCSCLDYW 583
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/570 (35%), Positives = 328/570 (57%), Gaps = 59/570 (10%)
Query: 67 LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH----KALTDAHALFNGMKERD 122
L C NI + +QVHA+ + + + + H ++ A ++F G+ +
Sbjct: 37 LKRCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPC 96
Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
+ ++ M+ G+ V F + E ++ G + D++T P +++AC K I G+ IH
Sbjct: 97 TFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHG 156
Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------- 233
V K GL+ D FV +L++MY +C ++ + +F+++ ++ +W+ M+ A
Sbjct: 157 QVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSE 216
Query: 234 ----------------------------------------NKFLL------DVILGTAVI 247
+ FLL ++I+ T+++
Sbjct: 217 CLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLV 276
Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
DMY KCG +D A IF +M ++N +++SAMI+ HG+G+ AL +F M+ + P+ +
Sbjct: 277 DMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHV 336
Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
+VS+L ACSH+GLV+EG R+F+ M + V P +HY C+VDLLGRAG L+EAL+ I+S
Sbjct: 337 VYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQS 396
Query: 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427
+ +EK++ +W L CR+ +N++L ++AA+ LL+ NPG Y+L+SN+Y+ W DV
Sbjct: 397 IPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDV 456
Query: 428 AKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYI 487
A+ R + + LK+ PG++ +E++ K H+F D +HP+ +EIY+ML + +L+ GY
Sbjct: 457 ARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYS 516
Query: 488 PDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHV 547
PD L +VDEE K L HS+K+AIAFGL+ TP G+ I+I +NLR+C DCH++ K +
Sbjct: 517 PDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKI 576
Query: 548 SAITRRVIIVRDANRFHHFEGGACSCRDYW 577
S I R I+VRD NRFH F+GG CSC+DYW
Sbjct: 577 SMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/586 (36%), Positives = 326/586 (55%), Gaps = 59/586 (10%)
Query: 48 MGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA 107
+GP+ F D +++ L R + ++VHA ++ L + +LL Y
Sbjct: 46 LGPEMGF-HGYDA--LLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDC 102
Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
L DA + + M E++ VSW+ M+ +S+ F E +R + + +T V+ +
Sbjct: 103 LEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTS 162
Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
C + +G+ IH +++K D FV ++L+DMYAK I +AR++F+ +P RD+V+
Sbjct: 163 CIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSC 222
Query: 228 TVMI-GANKFLLD----------------------------------------------- 239
T +I G + LD
Sbjct: 223 TAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLR 282
Query: 240 ------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
+L ++IDMY+KCG++ AR +FD M ++ ISW+AM+ Y HG G++ L+L
Sbjct: 283 RELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLEL 342
Query: 294 FPMML-SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM-WDDFAVRPDVKHYTCMVDL 351
F +M RV P+ +T +++L CSH + + GL +F M ++ +P +HY C+VD+
Sbjct: 343 FRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDM 402
Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411
LGRAGR+DEA + I+ M + G+ G+LLGACR+H +VD+ E + L+E +P+N G+Y
Sbjct: 403 LGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNY 462
Query: 412 VLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIY 471
V+LSN+YA+AGRW DV +R +M ++ + K PG +WI+ E +H F D THP+ EE+
Sbjct: 463 VILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVL 522
Query: 472 RMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIM 531
+ +S K++ AGY+PD + L+DVDEE K L HSEKLA+ FGLIAT EG IR+
Sbjct: 523 AKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVF 582
Query: 532 KNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
KNLR+C DCH+F K S + R + +RD NRFH G CSC DYW
Sbjct: 583 KNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 136/296 (45%), Gaps = 64/296 (21%)
Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMY 203
E E G ++ + ++ AC D++ + G+ +H ++K+ ++ L+ Y
Sbjct: 38 EALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFY 97
Query: 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIG------------------------ANKFLLD 239
KC ++DAR++ D+MP +++V+WT MI N+F
Sbjct: 98 GKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFA 157
Query: 240 VIL------------------------------GTAVIDMYAKCGSIDSAREIFDRMRQK 269
+L G++++DMYAK G I AREIF+ + ++
Sbjct: 158 TVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPER 217
Query: 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329
+V+S +A+IA Y G ++AL++F + S + PN +T+ SLL A S L++ G +
Sbjct: 218 DVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAH 277
Query: 330 SSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
+ +R ++ Y ++D+ + G L A +L ++M E+ W A+L
Sbjct: 278 CHV-----LRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP-ERTAISWNAML 327
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/567 (37%), Positives = 339/567 (59%), Gaps = 61/567 (10%)
Query: 72 NIFQIRQVHA-QIVAGGTLTNLIVANKLL-YIYALHKA--LTDAHALFNGMKERDSV-SW 126
+I ++RQ+HA I G ++++ + L+ Y+ +L ++ AH +F+ +++ +V W
Sbjct: 29 SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFIW 88
Query: 127 SVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRKDIVMGRLIHDIVL 185
+ ++ G++++ + I+ F +RE G+ + D++T PF+I+A D+ +G IH +V+
Sbjct: 89 NTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVI 148
Query: 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM--------------- 230
+SG +V +L+ +YA C + A ++FD+MP +DLV W +
Sbjct: 149 RSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALA 208
Query: 231 --------------------------IGA-------NKFLLDVIL------GTAVIDMYA 251
IGA + +++ V L ++D+YA
Sbjct: 209 LYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYA 268
Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFV 310
+CG ++ A+ +FD M KN +SW+++I +G GK+A++LF M S+ +LP ITFV
Sbjct: 269 RCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFV 328
Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
+LYACSH G+V+EG F M +++ + P ++H+ CMVDLL RAG++ +A + I+SM +
Sbjct: 329 GILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPM 388
Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
+ + +W LLGAC +H + DLAE A +L+ +P + G YVLLSN+YA+ RW DV KI
Sbjct: 389 QPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKI 448
Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
R M R +KK+PG + +EV N++H+F +GD +HPQS+ IY L ++ +L GY+P
Sbjct: 449 RKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQI 508
Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
+ DV+EE K + HSEK+AIAF LI+TPE + I ++KNLRVC DCH IK VS +
Sbjct: 509 SNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKV 568
Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
R I+VRD +RFHHF+ G+CSC+DYW
Sbjct: 569 YNREIVVRDRSRFHHFKNGSCSCQDYW 595
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 402 bits (1033), Expect = e-111, Method: Compositional matrix adjust.
Identities = 228/619 (36%), Positives = 329/619 (53%), Gaps = 114/619 (18%)
Query: 69 SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL----HKALTDAHALFNGMKERDSV 124
+CR I + Q+HA + G + + + A ++L A H+ L AH +FN M +R+
Sbjct: 32 NCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCF 91
Query: 125 SWSVMVGGFS-----KVADFINCFETFR--EFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177
SW+ ++ GFS K I F EF+ + + +T P V++AC I G
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFV----EPNRFTFPSVLKACAKTGKIQEG 147
Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA------------------------- 212
+ IH + LK G D+FV + LV MY C + DA
Sbjct: 148 KQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207
Query: 213 --------------------RQLFDQMPTRDLVTWTVMIGA---NKFL------------ 237
R LFD+M R +V+W MI N F
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 238 ---------------------------------------LDVILGTAVIDMYAKCGSIDS 258
+D +LG+A+IDMY+KCG I+
Sbjct: 268 GDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318
A +F+R+ ++NVI+WSAMI + HGQ A+D F M + V P+ + +++LL ACSH
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387
Query: 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
GLVEEG R FS M + P ++HY CMVDLLGR+G LDEA + I +M ++ D+ +W
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWK 447
Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
ALLGACR+ NV++ + A L++ P + G YV LSN+YA+ G W +V+++R M +
Sbjct: 448 ALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKD 507
Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
++K PG + I+++ +H+F V D +HP+++EI MLV +S+KL LAGY P T L +++
Sbjct: 508 IRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLE 567
Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
EE K L+ HSEK+A AFGLI+T G IRI+KNLR+C DCHS IK +S + +R I VR
Sbjct: 568 EEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVR 627
Query: 559 DANRFHHFEGGACSCRDYW 577
D RFHHF+ G+CSC DYW
Sbjct: 628 DRKRFHHFQDGSCSCMDYW 646
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/567 (37%), Positives = 317/567 (55%), Gaps = 55/567 (9%)
Query: 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
I +S R + + + + G + + N L+ +Y L DAH LF+ M +R+
Sbjct: 67 LIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRN 126
Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
+SW+ M+ +SK E +R ++ + YT V+R+C D+ R++H
Sbjct: 127 VISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHC 183
Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDAR----------------------------- 213
++K GL+ D FV +AL+D++AK +DA
Sbjct: 184 GIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDV 243
Query: 214 --QLFDQMPTRDLV----TWTVMIGAN-----------------KFLLDVILGTAVIDMY 250
+LF +M + T T ++ A K+ D+IL A++DMY
Sbjct: 244 ALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMY 303
Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310
KCGS++ A +F++M++++VI+WS MI+ +G ++AL LF M SS PN IT V
Sbjct: 304 CKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIV 363
Query: 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370
+L+ACSH GL+E+G F SM + + P +HY CM+DLLG+AG+LD+A+KL+ M
Sbjct: 364 GVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMEC 423
Query: 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
E D W LLGACR+ +N+ LAE AAK ++ P++ G Y LLSN+YAN+ +W V +I
Sbjct: 424 EPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEI 483
Query: 431 RDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDT 490
R M R +KK PG +WIEV +IH F +GD++HPQ E+ + L L +L GY+P+T
Sbjct: 484 RTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPET 543
Query: 491 NFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAI 550
NF L D++ E +L HSEKLA+AFGL+ P IRI KNLR+CGDCH F K S +
Sbjct: 544 NFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKL 603
Query: 551 TRRVIIVRDANRFHHFEGGACSCRDYW 577
R I++RD R+HHF+ G CSC DYW
Sbjct: 604 EIRSIVIRDPIRYHHFQDGKCSCGDYW 630
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/575 (37%), Positives = 323/575 (56%), Gaps = 64/575 (11%)
Query: 63 FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
F S + C N+ ++R Q+H +V G L + + L+ Y+ A+ DA LF +
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357
Query: 120 -ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
+ VSW+ M+ GF + + F E R G++ + +T ++ A ++
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL----PVISPS 413
Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----- 233
+H V+K+ + V AL+D Y K +++A ++F + +D+V W+ M+
Sbjct: 414 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473
Query: 234 -------------------NKFLLDVILG------------------------------- 243
N+F IL
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533
Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
+A++ MYAK G+I+SA E+F R R+K+++SW++MI+ Y HGQ KALD+F M +V
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593
Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK 363
+ +TF+ + AC+H GLVEEG + F M D + P +H +CMVDL RAG+L++A+K
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653
Query: 364 LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423
+IE+M +W +L ACR+HK +L +AA+ ++ +P++ YVLLSN+YA +G
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 713
Query: 424 WQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483
WQ+ AK+R LM R +KK PG++WIEV+NK + F GD +HP ++IY L LS +L+
Sbjct: 714 WQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKD 773
Query: 484 AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSF 543
GY PDT++ L D+D+E K L HSE+LAIAFGLIATP+G+ + I+KNLRVCGDCH
Sbjct: 774 LGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLV 833
Query: 544 IKHVSAITRRVIIVRDANRFHHFEG-GACSCRDYW 577
IK ++ I R I+VRD+NRFHHF G CSC D+W
Sbjct: 834 IKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 178/417 (42%), Gaps = 65/417 (15%)
Query: 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVA 137
QVH +V G + V+N L+ +Y + A LF+ + + V+W+ M+ G++
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274
Query: 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197
+ F ++L + VI+ C + K++ +H V+K G DQ +
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334
Query: 198 ALVDMYAKCKVIDDARQLFDQMP-TRDLVTWTVMIGA----------------------- 233
AL+ Y+KC + DA +LF ++ ++V+WT MI
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394
Query: 234 -NKFLLDVIL--------------------------GTAVIDMYAKCGSIDSAREIFDRM 266
N+F VIL GTA++D Y K G ++ A ++F +
Sbjct: 395 PNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454
Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
K++++WSAM+A Y G+ + A+ +F + + PN TF S+L C+ T
Sbjct: 455 DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 514
Query: 327 RLFSSMWDDFAVRPDVKHYTC----MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
+ F FA++ + C ++ + + G ++ A ++ + EKD W +++
Sbjct: 515 KQFHG----FAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMIS 569
Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA---NAGRWQDVAKIRDLMTR 436
H A K + +R+ + G V V+A +AG ++ K D+M R
Sbjct: 570 GYAQHGQAMKALDVFKEMKKRKVKMDG--VTFIGVFAACTHAGLVEEGEKYFDIMVR 624
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 96/396 (24%), Positives = 169/396 (42%), Gaps = 68/396 (17%)
Query: 43 RVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102
R+ M+M DC SV +S+ L C +F RQ+H Q + G L ++ V L+ Y
Sbjct: 86 RLGMEM--DCSIFSSV---LKVSATL-CDELFG-RQLHCQCIKFGFLDDVSVGTSLVDTY 138
Query: 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP 162
D +F+ MKER+ V+W+ ++ G+++ + F G Q +S+T
Sbjct: 139 MKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198
Query: 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
+ + G +H +V+K+GLD V +L+++Y KC + AR LFD+ +
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258
Query: 223 DLVTWTVMI---GANKFLLDVI-------------------------------------- 241
+VTW MI AN L+ +
Sbjct: 259 SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLH 318
Query: 242 -------------LGTAVIDMYAKCGSIDSAREIFDRMR-QKNVISWSAMIAAYGYHGQG 287
+ TA++ Y+KC ++ A +F + NV+SW+AMI+ + +
Sbjct: 319 CSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGK 378
Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
++A+DLF M V PN T+ +L A E ++ + ++ + T
Sbjct: 379 EEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG-----TA 433
Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383
++D + G+++EA K+ + +KD W A+L
Sbjct: 434 LLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAG 468
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 54/265 (20%)
Query: 108 LTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167
L +AH LF+ RD S+ ++ GFS+ F R GM++D V++
Sbjct: 43 LYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKV 102
Query: 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227
D + GR +H +K G D V +LVD Y K D R++FD+M R++VTW
Sbjct: 103 SATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162
Query: 228 TVMIGA------------------------NKFLLDVILG-------------------- 243
T +I N F LG
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222
Query: 244 ----------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL 293
++I++Y KCG++ AR +FD+ K+V++W++MI+ Y +G +AL +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282
Query: 294 FPMMLSSRVLPNRITFVSLLYACSH 318
F M + V + +F S++ C++
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCAN 307
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 104/236 (44%), Gaps = 25/236 (10%)
Query: 61 KFFISSLLSC-----RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
+F SS+L+ ++ Q +Q H + ++L V++ LL +YA + A +F
Sbjct: 494 EFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVF 553
Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
+E+D VSW+ M+ G+++ + + F+E + +++D T V AC +
Sbjct: 554 KRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVE 613
Query: 176 MGRLIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT-WTVMIGA 233
G DI+++ + + + +VD+Y++ ++ A ++ + MP T W ++ A
Sbjct: 614 EGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA 673
Query: 234 NKFLLDVILG------------------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
+ LG + +MYA+ G ++ M ++NV
Sbjct: 674 CRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNV 729
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/561 (37%), Positives = 322/561 (57%), Gaps = 56/561 (9%)
Query: 72 NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVG 131
N+ ++HA ++ G +NL V N L+ +Y+ F M ++D +SW+ ++
Sbjct: 401 NLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIA 460
Query: 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI 191
G+++ + E FR+ + M++D L ++RA K +++ + IH +L+ GL +
Sbjct: 461 GYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-L 519
Query: 192 DQFVCAALVDMYAKCKVI-------------------------------DDARQLFDQMP 220
D + LVD+Y KC+ + +A +LF +M
Sbjct: 520 DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMV 579
Query: 221 TRDLVTWTVMI-----------GANK------------FLLDVILGTAVIDMYAKCGSID 257
L +V + NK F L+ + AV+DMYA CG +
Sbjct: 580 ETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQ 639
Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
SA+ +FDR+ +K ++ +++MI AYG HG GK A++LF M V P+ I+F++LLYACS
Sbjct: 640 SAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACS 699
Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
H GL++EG M ++ + P +HY C+VD+LGRA + EA + ++ M E +W
Sbjct: 700 HAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVW 759
Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
ALL ACR H ++ E+AA+ LLE +P+NPG+ VL+SNV+A GRW DV K+R M
Sbjct: 760 CALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKAS 819
Query: 438 RLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHD 496
++K PG +WIE++ K+H+F+ D +HP+S+EIY L ++ KLE GY+ DT F LH+
Sbjct: 820 GMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHN 879
Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
VDE KV L+ HSE++AIA+GL+ TP+ +RI KNLRVC DCH+F K VS + RR I+
Sbjct: 880 VDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIV 939
Query: 557 VRDANRFHHFEGGACSCRDYW 577
+RDANRFHHFE G CSC D W
Sbjct: 940 MRDANRFHHFESGLCSCGDSW 960
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/397 (24%), Positives = 170/397 (42%), Gaps = 84/397 (21%)
Query: 63 FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
F + L +C + IR ++H+ +V G + + N L+ +YA + L+ A LF+G +
Sbjct: 185 FPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244
Query: 120 ER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR 178
E+ D+V W+ ++ +S + E FRE G +SYT+ + AC +G+
Sbjct: 245 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGK 304
Query: 179 LIHDIVLKSGLDIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG----- 232
IH VLKS + +VC AL+ MY +C + A ++ QM D+VTW +I
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364
Query: 233 -----ANKFLLDVI--------------------------------------------LG 243
A +F D+I +G
Sbjct: 365 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVG 424
Query: 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL 303
+IDMY+KC F RM K++ISW+ +IA Y + +AL+LF + R+
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484
Query: 304 PNRITFVSLLYACS-----------HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
+ + S+L A S H ++ +GL D ++ + +VD+
Sbjct: 485 IDEMILGSILRASSVLKSMLIVKEIHCHILRKGLL-------DTVIQNE------LVDVY 531
Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN 389
G+ + A ++ ES+ KD W +++ + ++ N
Sbjct: 532 GKCRNMGYATRVFESIK-GKDVVSWTSMISSSALNGN 567
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 134/312 (42%), Gaps = 48/312 (15%)
Query: 71 RNIFQIRQVHAQIVAGGTLTNL-IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM 129
R + Q RQ+H++I L +A KL+++Y +L DA +F+ M +R + +W+ M
Sbjct: 94 RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTM 153
Query: 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL 189
+G + + + + G+ L + P +++AC +DI G +H +++K G
Sbjct: 154 IGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGY 213
Query: 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249
F+ ALV MYAK + AR+LFD + G AV+
Sbjct: 214 HSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK--------------------GDAVL-- 251
Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
W++++++Y G+ + L+LF M + PN T
Sbjct: 252 ------------------------WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTI 287
Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
VS L AC + G + +S+ ++ ++ + R G++ +A +++ M+
Sbjct: 288 VSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMN 347
Query: 370 VEKDEGLWGALL 381
D W +L+
Sbjct: 348 -NADVVTWNSLI 358
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 115/283 (40%), Gaps = 25/283 (8%)
Query: 197 AALVDMYAKCKVIDDARQL----FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252
A ++++ K + + RQL F P+ F LD + G V MY K
Sbjct: 84 AYVLELCGKRRAVSQGRQLHSRIFKTFPS--------------FELDFLAGKLVF-MYGK 128
Query: 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312
CGS+D A ++FD M + +W+ MI AY +G+ AL L+ M V +F +L
Sbjct: 129 CGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPAL 188
Query: 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
L AC+ + G L S+ +V + + L A +L + +
Sbjct: 189 LKACAKLRDIRSGSELH-SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247
Query: 373 DEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431
D LW ++L + K+++ E+ + + P Y ++S + A G AK+
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFRE--MHMTGPAPNSYTIVSALTACDGF--SYAKLG 303
Query: 432 DLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRML 474
+ LK + + V N + PQ+E I R +
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM 346
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/585 (35%), Positives = 314/585 (53%), Gaps = 84/585 (14%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----------------- 119
+Q+H Q++ G + L+V + LLY+YA ++DA +F G+
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218
Query: 120 -------------ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166
E+DSVSW+ M+ G ++ E FRE G+++D Y V+
Sbjct: 219 GMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLP 278
Query: 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226
AC I G+ IH ++++ +V +AL+DMY KCK + A+ +FD+M +++V+
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338
Query: 227 WTVMI----------GANKFLLD------------------------------------- 239
WT M+ A K LD
Sbjct: 339 WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI 398
Query: 240 -------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292
V + +++ +Y KCG ID + +F+ M ++ +SW+AM++AY G+ + +
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQ 458
Query: 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352
LF M+ + P+ +T ++ ACS GLVE+G R F M ++ + P + HY+CM+DL
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLF 518
Query: 353 GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412
R+GRL+EA++ I M D W LL ACR N+++ + AA+SL+E P +P Y
Sbjct: 519 SRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 578
Query: 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYR 472
LLS++YA+ G+W VA++R M + +KK PG +WI+ + K+H FS D + P ++IY
Sbjct: 579 LLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYA 638
Query: 473 MLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMK 532
L L+ K+ GY PDT+F HDV+E VKV L HSE+LAIAFGLI P G IR+ K
Sbjct: 639 KLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGK 698
Query: 533 NLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
NLRVC DCH+ KH+S++T R I+VRDA RFH F+ G CSC D+W
Sbjct: 699 NLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 96/390 (24%), Positives = 169/390 (43%), Gaps = 68/390 (17%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK---VADFINCFETF- 146
NL N LL Y+ +++ + F + +RD V+W+V++ G+S V + + T
Sbjct: 71 NLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMM 130
Query: 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206
R+F L TL +++ + +G+ IH V+K G + V + L+ MYA
Sbjct: 131 RDF---SANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANV 187
Query: 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266
I DA+++F + R+ V + ++G LL CG I+ A ++F M
Sbjct: 188 GCISDAKKVFYGLDDRNTVMYNSLMGG---LL-------------ACGMIEDALQLFRGM 231
Query: 267 RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326
+K+ +SW+AMI +G K+A++ F M + ++ F S+L AC G + EG
Sbjct: 232 -EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGK 290
Query: 327 RLF---------------SSMWD---------------DFAVRPDVKHYTCMVDLLGRAG 356
++ S++ D D + +V +T MV G+ G
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 350
Query: 357 RLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG--HY 411
R +EA+K+ M ++ D G + AC +++ + S + G HY
Sbjct: 351 RAEEAVKIFLDMQRSGIDPDHYTLGQAISAC-----ANVSSLEEGSQFHGKAITSGLIHY 405
Query: 412 VLLSN----VYANAGRWQDVAKIRDLMTRR 437
V +SN +Y G D ++ + M R
Sbjct: 406 VTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298
+ L ++ YA S AR +FDR+ Q N+ SW+ ++ AY KA + M
Sbjct: 40 ETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY------SKAGLISEMES 93
Query: 299 SSRVLPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337
+ LP+R +T+ L+ S +GLV ++ +++M DF+
Sbjct: 94 TFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFS 134
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/590 (37%), Positives = 327/590 (55%), Gaps = 61/590 (10%)
Query: 48 MGPDCQFTRSVDPKFFISSLL-SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYA 103
M + Q R F LL +C + + R VHAQ+ G ++ V N L+ +YA
Sbjct: 106 MYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA 165
Query: 104 LHKALTDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161
+ L A +F G+ ER VSW+ +V +++ + + E F + + ++ D L
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVAL 225
Query: 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD---- 217
V+ A +D+ GR IH V+K GL+I+ + +L MYAKC + A+ LFD
Sbjct: 226 VSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKS 285
Query: 218 ---------------------------QMPTRDLVTWTVMI------------------- 231
+M +D+ T+ I
Sbjct: 286 PNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSM 345
Query: 232 ----GANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
G + + DV + +A+IDM+AKCGS++ AR +FDR ++V+ WSAMI YG HG+
Sbjct: 346 YEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRA 405
Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
++A+ L+ M V PN +TF+ LL AC+H+G+V EG F+ M D + P +HY C
Sbjct: 406 REAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYAC 464
Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
++DLLGRAG LD+A ++I+ M V+ +WGALL AC+ H++V+L E AA+ L P N
Sbjct: 465 VIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN 524
Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
GHYV LSN+YA A W VA++R M + L K G +W+EV ++ F VGD +HP+
Sbjct: 525 TGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRY 584
Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
EEI R + + +L+ G++ + + LHD+++E L SHSE++AIA+GLI+TP+GT
Sbjct: 585 EEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTP 644
Query: 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+RI KNLR C +CH+ K +S + R I+VRD NRFHHF+ G CSC DYW
Sbjct: 645 LRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/383 (24%), Positives = 184/383 (48%), Gaps = 60/383 (15%)
Query: 62 FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
F+ S + S + Q++Q+HA+++ G + + KL++ + +T A +F+ +
Sbjct: 23 FYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRP 82
Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
W+ ++ G+S+ F + + + DS+T P +++AC + MGR +H
Sbjct: 83 QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142
Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD--QMPTRDLVTWTVMIGA------ 233
V + G D D FV L+ +YAKC+ + AR +F+ +P R +V+WT ++ A
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Query: 234 ---------------------------NKF--LLDVILG----TAVIDM----------- 249
N F L D+ G +V+ M
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262
Query: 250 ----YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
YAKCG + +A+ +FD+M+ N+I W+AMI+ Y +G ++A+D+F M++ V P+
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322
Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMW-DDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364
I+ S + AC+ G +E+ ++ + D+ R DV + ++D+ + G + E +L
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSV-EGARL 379
Query: 365 IESMSVEKDEGLWGALLGACRIH 387
+ ++++D +W A++ +H
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLH 402
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 288/487 (59%), Gaps = 47/487 (9%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
N+ N ++ YA +++A LF+ M +RD VSW+ M+ G+S+ F +
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
R G +L+ + + C D + +G+ +H ++K G + FV
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFV--------------- 446
Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
G A++ MY KCGSI+ A ++F M K+
Sbjct: 447 --------------------------------GNALLLMYCKCGSIEEANDLFKEMAGKD 474
Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
++SW+ MIA Y HG G+ AL F M + P+ T V++L ACSHTGLV++G + F
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534
Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
+M D+ V P+ +HY CMVDLLGRAG L++A L+++M E D +WG LLGA R+H N
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594
Query: 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450
+LAE AA + +P+N G YVLLSN+YA++GRW DV K+R M + +KK+PG++WIE+
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654
Query: 451 ENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
+NK H FSVGD HP+ +EI+ L L +++ AGY+ T+ LHDV+EE K + HS
Sbjct: 655 QNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHS 714
Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
E+LA+A+G++ G IR++KNLRVC DCH+ IK+++ IT R+II+RD NRFHHF+ G+
Sbjct: 715 ERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGS 774
Query: 571 CSCRDYW 577
CSC DYW
Sbjct: 775 CSCGDYW 781
Score = 108 bits (271), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 101/392 (25%), Positives = 157/392 (40%), Gaps = 68/392 (17%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI 150
N + N LL Y + + +A LF + VSW+ ++GGF K + R+F
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA----RQFF 242
Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
D + +I I R + D +S + D F A+V Y + ++++
Sbjct: 243 DSMNVRDVVSWNTIITGYAQSGKIDEARQLFD---ESPVQ-DVFTWTAMVSGYIQNRMVE 298
Query: 211 DARQLFDQMPTRDLVTWTVMIGA---------NKFLLDVI------LGTAVIDMYAKCGS 255
+AR+LFD+MP R+ V+W M+ K L DV+ +I YA+CG
Sbjct: 299 EARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGK 358
Query: 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315
I A+ +FD+M +++ +SW+AMIA Y G +AL LF M NR +F S L
Sbjct: 359 ISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALST 418
Query: 316 CSHT-----------------------------------GLVEEGLRLFSSMWDDFAVRP 340
C+ G +EE LF M
Sbjct: 419 CADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEM-----AGK 473
Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVE---KDEGLWGALLGACRIHKNVDLAEMAA 397
D+ + M+ R G + AL+ ESM E D+ A+L AC VD
Sbjct: 474 DIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYF 533
Query: 398 KSLLERQPQNPG--HYVLLSNVYANAGRWQDV 427
++ + P HY + ++ AG +D
Sbjct: 534 YTMTQDYGVMPNSQHYACMVDLLGRAGLLEDA 565
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 133/316 (42%), Gaps = 51/316 (16%)
Query: 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF-----REFI 150
N ++ Y + A LF+ M ERD VSW+VM+ G+ + + E F R+
Sbjct: 99 NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVC 158
Query: 151 RCGMQLDSYTLPFVIRACR-------DRKDIVMGRLIHDIVLKSGLD------------- 190
L Y + R ++ D+ L+ V S ++
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWA 218
Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------NK 235
+ + C L+ + K K I +ARQ FD M RD+V+W +I
Sbjct: 219 LVSWNC--LLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276
Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFP 295
+ DV TA++ Y + ++ ARE+FD+M ++N +SW+AM+A Y + + A +LF
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFD 336
Query: 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355
+M V T+ +++ + G + E LF M + D + M+ ++
Sbjct: 337 VMPCRNV----STWNTMITGYAQCGKISEAKNLFDKM-----PKRDPVSWAAMIAGYSQS 387
Query: 356 GRLDEALKLIESMSVE 371
G EAL+L M E
Sbjct: 388 GHSFEALRLFVQMERE 403
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 30/258 (11%)
Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------GANKFLL------DVIL 242
++ Y + + AR+LFD+MP RDLV+W VMI G + L DV
Sbjct: 100 GMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCS 159
Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
++ YA+ G +D AR +FDRM +KN +SW+A+++AY + + ++A M+ SR
Sbjct: 160 WNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEAC----MLFKSRE 215
Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
+++ LL + E + F SM VR DV + ++ ++G++DEA
Sbjct: 216 NWALVSWNCLLGGFVKKKKIVEARQFFDSM----NVR-DVVSWNTIITGYAQSGKIDEAR 270
Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANA 421
+L + V+ D W A++ ++ V+ A+ L ++ P+ N + + Y
Sbjct: 271 QLFDESPVQ-DVFTWTAMVSGYIQNRMVE----EARELFDKMPERNEVSWNAMLAGYVQG 325
Query: 422 GRWQDVAKIRDLMTRRRL 439
R + ++ D+M R +
Sbjct: 326 ERMEMAKELFDVMPCRNV 343
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 23/232 (9%)
Query: 63 FISSLLSCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
F S+L +C ++ + +Q+H ++V GG T V N LL +Y ++ +A+ LF M
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGR- 178
+D VSW+ M+ G+S+ F R G++ D T+ V+ AC + GR
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFL 237
+ + G+ + A +VD+ + +++DA L MP D W ++GA++
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591
Query: 238 LDVILGTAVID------------------MYAKCGSIDSAREIFDRMRQKNV 271
+ L D +YA G ++ RMR K V
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/524 (39%), Positives = 309/524 (58%), Gaps = 57/524 (10%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETF- 146
++I ++ Y + + DA +F+ M E+ VSW+ M+ G+ ++ D FE
Sbjct: 202 SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMP 261
Query: 147 -REFIRC-------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF---- 194
+ I C G + + V + ++R D +I I ++G +++
Sbjct: 262 VKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIK-IHERNGFELEALDLFI 320
Query: 195 -------------------VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235
VCA+L ++ +Q+ Q+ +
Sbjct: 321 LMQKQGVRPTFPTLISILSVCASLASLH-------HGKQVHAQLVR------------CQ 361
Query: 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF- 294
F +DV + + ++ MY KCG + ++ IFDR K++I W+++I+ Y HG G++AL +F
Sbjct: 362 FDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFC 421
Query: 295 PMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354
M LS PN +TFV+ L ACS+ G+VEEGL+++ SM F V+P HY CMVD+LGR
Sbjct: 422 EMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGR 481
Query: 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414
AGR +EA+++I+SM+VE D +WG+LLGACR H +D+AE AK L+E +P+N G Y+LL
Sbjct: 482 AGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILL 541
Query: 415 SNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGD-STHPQSEEIYRM 473
SN+YA+ GRW DVA++R LM R ++K PG +W EVENK+H F+ G ++HP+ E I ++
Sbjct: 542 SNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKI 601
Query: 474 LVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKN 533
L L L AGY PD ++ LHDVDEE KV +L HSE+LA+A+ L+ EG IR+MKN
Sbjct: 602 LDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKN 661
Query: 534 LRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
LRVC DCH+ IK +S + R II+RDANRFHHF G CSC+DYW
Sbjct: 662 LRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/425 (23%), Positives = 178/425 (41%), Gaps = 86/425 (20%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF---SKVADFINCFETFR 147
N+I N L+ Y + + +A +F+ M ER+ VSW+ +V G+ KV + F
Sbjct: 78 NIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMP 137
Query: 148 E------------FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD----- 190
E F++ G D+ L +I D+ +I +IH + + +D
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLYEMIP---DKDNIARTSMIHGLCKEGRVDEAREI 194
Query: 191 IDQF------VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLD-- 239
D+ +V Y + +DDAR++FD MP + V+WT M+ N + D
Sbjct: 195 FDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAE 254
Query: 240 ----------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289
VI A+I + G I AR +FD M+++N SW +I + +G +
Sbjct: 255 ELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELE 314
Query: 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM----------------- 332
ALDLF +M V P T +S+L C+ + G ++ + +
Sbjct: 315 ALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMT 374
Query: 333 --------------WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDE 374
+D F + D+ + ++ G +EALK+ M S + +E
Sbjct: 375 MYIKCGELVKSKLIFDRFPSK-DIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNE 433
Query: 375 GLWGALLGACR----IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430
+ A L AC + + + + E + +S+ +P HY + ++ AGR+ + ++
Sbjct: 434 VTFVATLSACSYAGMVEEGLKIYE-SMESVFGVKPIT-AHYACMVDMLGRAGRFNEAMEM 491
Query: 431 RDLMT 435
D MT
Sbjct: 492 IDSMT 496
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 109/225 (48%), Gaps = 31/225 (13%)
Query: 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKN 270
DAR+LFD+MP R++++W ++ Y K G ID AR++FD M ++N
Sbjct: 66 DARKLFDEMPDRNIISWNGLVSG----------------YMKNGEIDEARKVFDLMPERN 109
Query: 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330
V+SW+A++ Y ++G+ A LF M N++++ +L G +++ +L+
Sbjct: 110 VVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDGRIDDACKLYE 165
Query: 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNV 390
+ D D T M+ L + GR+DEA ++ + MS E+ W ++ + V
Sbjct: 166 MIPDK-----DNIARTSMIHGLCKEGRVDEAREIFDEMS-ERSVITWTTMVTGYGQNNRV 219
Query: 391 DLAEMAAKSLLERQPQNPG-HYVLLSNVYANAGRWQDVAKIRDLM 434
D A+ + + P+ + + Y GR +D ++ ++M
Sbjct: 220 D----DARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 260
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 117/259 (45%), Gaps = 35/259 (13%)
Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
LV Y K ID+AR++FD MP R++V+W TA++ Y G +D
Sbjct: 84 GLVSGYMKNGEIDEARKVFDLMPERNVVSW----------------TALVKGYVHNGKVD 127
Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
A +F +M +KN +SW+ M+ + G+ A L+ M+ + I S+++
Sbjct: 128 VAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLC 183
Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
G V+E +F M + + +T MV G+ R+D+A K+ + M EK E W
Sbjct: 184 KEGRVDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVSW 237
Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
++L + ++ AE L E P P + + + + G+ ++AK R +
Sbjct: 238 TSMLMGYVQNGRIEDAE----ELFEVMPVKP--VIACNAMISGLGQKGEIAKARRVFDSM 291
Query: 438 RLKKIPGWTWIEVENKIHQ 456
+ + W + KIH+
Sbjct: 292 KERNDASWQTV---IKIHE 307
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 50/221 (22%)
Query: 251 AKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-------- 302
++ G I AR++FD K++ SW++M+A Y + + A LF M +
Sbjct: 28 SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVS 87
Query: 303 -----------------LPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343
+P R +++ +L+ H G V+ LF M P+
Sbjct: 88 GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM-------PEKN 140
Query: 344 HYTCMVDLLG--RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA-----EMA 396
+ V L+G + GR+D+A KL E + + + + G C+ VD A EM+
Sbjct: 141 KVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCK-EGRVDEAREIFDEMS 199
Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437
+S++ + + Y R D KI D+M +
Sbjct: 200 ERSVIT--------WTTMVTGYGQNNRVDDARKIFDVMPEK 232
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 27/234 (11%)
Query: 14 SAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCR 71
S K R +S T E +G E ++ + MQ + V P F IS L C
Sbjct: 290 SMKERNDASWQTVIKIHERNGFELEALDLFILMQ-------KQGVRPTFPTLISILSVCA 342
Query: 72 NIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
++ + +QVHAQ+V ++ VA+ L+ +Y L + +F+ +D + W+
Sbjct: 343 SLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNS 402
Query: 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTLP----FV--IRACRDRKDIVMGRLIHD 182
++ G++ + F C M L T P FV + AC + G I++
Sbjct: 403 IISGYASHGLGEEALKVF-----CEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYE 457
Query: 183 IVLKSGLDIDQFVC--AALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGA 233
++S + A +VDM + ++A ++ D M D W ++GA
Sbjct: 458 -SMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 395 bits (1016), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/553 (36%), Positives = 312/553 (56%), Gaps = 54/553 (9%)
Query: 79 VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138
+H+ +V G ++ LL IY+ L DAH LF+ + +R V+W+ + G++
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA 198
+ F++ + G++ DSY + V+ AC D+ G I + + + + FV
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 199 LVDMYAKCKVIDDARQLFDQMPTRDLVT-------------------------------- 226
LV++YAKC ++ AR +FD M +D+VT
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 227 ---------------------WTV-MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
W + +I ++FL ++ + A+IDMYAKCG++ E+F
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
M++K+++ +A I+ +G K + +F + P+ TF+ LL C H GL+++
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432
Query: 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGAC 384
GLR F+++ +A++ V+HY CMVDL GRAG LD+A +LI M + + +WGALL C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492
Query: 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPG 444
R+ K+ LAE K L+ +P N G+YV LSN+Y+ GRW + A++RD+M ++ +KKIPG
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 552
Query: 445 WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVG 504
++WIE+E K+H+F D +HP S++IY L L ++ L G++P T F DV+EE K
Sbjct: 553 YSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKER 612
Query: 505 NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFH 564
L HSEKLA+A GLI+T G IR++KNLRVCGDCH +K +S ITRR I+VRD NRFH
Sbjct: 613 VLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672
Query: 565 HFEGGACSCRDYW 577
F G+CSC DYW
Sbjct: 673 CFTNGSCSCNDYW 685
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 158/365 (43%), Gaps = 57/365 (15%)
Query: 64 ISSLLSCR-NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
I +L+S + ++Q+H ++ + + N LL + ++ LF+ + +
Sbjct: 16 IKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPN 75
Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
++ ++ GF F + F + G+ L +T P V++AC +G +H
Sbjct: 76 IFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHS 135
Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKF 236
+V+K G + D +L+ +Y+ ++DA +LFD++P R +VTWT + G ++
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHRE 195
Query: 237 LLDVI-----LGTA-----VIDMYAKC---GSIDS------------------------- 258
+D+ +G ++ + + C G +DS
Sbjct: 196 AIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVN 255
Query: 259 ----------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308
AR +FD M +K++++WS MI Y + K+ ++LF ML + P++ +
Sbjct: 256 LYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFS 315
Query: 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368
V L +C+ G ++ G S+ D ++ ++D+ + G + ++ + M
Sbjct: 316 IVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374
Query: 369 SVEKD 373
EKD
Sbjct: 375 K-EKD 378
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/615 (35%), Positives = 326/615 (53%), Gaps = 93/615 (15%)
Query: 56 RSVDPKFFISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYA--------- 103
R D F S L SC + +R VH IV G +L N L+ +YA
Sbjct: 101 RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKI 160
Query: 104 ---------------------------LHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+ + +F M +D VS++ ++ G+++
Sbjct: 161 SVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQS 220
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
+ + RE ++ DS+TL V+ + D++ G+ IH V++ G+D D ++
Sbjct: 221 GMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIG 280
Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRD--------------------------LVTWTVM 230
++LVDMYAK I+D+ ++F ++ RD +VT V
Sbjct: 281 SSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK 340
Query: 231 IGA----------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREI 262
GA F ++ + +A++DMY+KCG+I +AR+I
Sbjct: 341 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKI 400
Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
FDRM + +SW+A+I + HG G +A+ LF M V PN++ FV++L ACSH GLV
Sbjct: 401 FDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 460
Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
+E F+SM + + +++HY + DLLGRAG+L+EA I M VE +W LL
Sbjct: 461 DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLS 520
Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
+C +HKN++LAE A+ + +N G YVL+ N+YA+ GRW+++AK+R M ++ L+K
Sbjct: 521 SCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKK 580
Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
P +WIE++NK H F GD +HP ++I L + E++E GY+ DT+ LHDVDEE K
Sbjct: 581 PACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHK 640
Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
L+ HSE+LA+AFG+I T GT IR+ KN+R+C DCH IK +S IT R IIVRD +R
Sbjct: 641 RELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSR 700
Query: 563 FHHFEGGACSCRDYW 577
FHHF G CSC DYW
Sbjct: 701 FHHFNRGNCSCGDYW 715
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/403 (23%), Positives = 175/403 (43%), Gaps = 93/403 (23%)
Query: 75 QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
Q +Q+HAQ + +L++ A+ ++ IY K L +A LF +K ++W ++ F+
Sbjct: 23 QAKQLHAQFIRTQSLSH-TSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFT 81
Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
+ F +F E G D P V+++C D+ G +H +++ G+D D +
Sbjct: 82 DQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLY 141
Query: 195 VCAALVDMYAK---------------------------------CKV---IDDARQLFDQ 218
AL++MYAK C + ID R++F+
Sbjct: 142 TGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEV 201
Query: 219 MPTRDLVTWTVMIGA------------------------NKFLL-----------DVI-- 241
MP +D+V++ +I + F L DVI
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 242 -----------------LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH 284
+G++++DMYAK I+ + +F R+ ++ ISW++++A Y +
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321
Query: 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344
G+ +AL LF M++++V P + F S++ AC+H + G +L + ++
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSNIFI 380
Query: 345 YTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
+ +VD+ + G + A K+ + M+V DE W A++ +H
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAIIMGHALH 422
>sp|Q9LTF4|PP429_ARATH Putative pentatricopeptide repeat-containing protein At5g52630
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 588
Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/561 (39%), Positives = 319/561 (56%), Gaps = 55/561 (9%)
Query: 71 RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
R+ + Q+H +V G +VAN L+ Y+ + D+ F ++ S +WS ++
Sbjct: 29 RSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWSSII 88
Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190
F++ E ++ + ++ D + LP ++C +GR +H + +K+G D
Sbjct: 89 SCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYD 148
Query: 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM-------------------- 230
D FV ++LVDMYAKC I AR++FD+MP R++VTW+ M
Sbjct: 149 ADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEA 208
Query: 231 -----------------IGANKFLLDV---ILG--------------TAVIDMYAKCGSI 256
+ AN LL++ I G ++++ +Y+KCG
Sbjct: 209 LFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVP 268
Query: 257 DSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316
+ A ++F+ + KN+ W+AM+ AY H +K ++LF M S + PN ITF+++L AC
Sbjct: 269 EGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNAC 328
Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
SH GLV+EG F M + + P KHY +VD+LGRAGRL EAL++I +M ++ E +
Sbjct: 329 SHAGLVDEGRYYFDQMKES-RIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESV 387
Query: 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436
WGALL +C +HKN +LA AA + E P + G ++ LSN YA GR++D AK R L+
Sbjct: 388 WGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRD 447
Query: 437 RRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHD 496
R KK G +W+E NK+H F+ G+ H +S+EIY L L E++E AGYI DT++ L +
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLRE 507
Query: 497 VDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVII 556
VD + K + HSE+LAIAFGLI P IR+MKNLRVCGDCH+ IK +S TRRVII
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVII 567
Query: 557 VRDANRFHHFEGGACSCRDYW 577
VRD NRFH FE G CSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588
>sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protein At2g41080
OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2
Length = 650
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/601 (34%), Positives = 319/601 (53%), Gaps = 86/601 (14%)
Query: 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
FI S + +++ +Q+H +V G ++ + N L+ +Y+ A A++ M++++
Sbjct: 50 FIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKN 109
Query: 123 SVSWSVMVGGFSKVADFINC------------------------FE-------TFREFIR 151
+S ++++ G+ + D +N FE FRE
Sbjct: 110 YMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHG 169
Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
G D YTL V + + +G+ IH +K GL++D V ++L MY + + D
Sbjct: 170 LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 229
Query: 212 ARQLFDQMPTRDLVTWTVMIGA------------------------NKFLLDVILGTA-- 245
+ MP R+LV W +I NK +L +
Sbjct: 230 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 289
Query: 246 ----------------------------VIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277
+I MY+KCG + A + F ++ + WS+M
Sbjct: 290 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 349
Query: 278 IAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336
I+AYG+HGQG +A++LF M + N + F++LLYACSH+GL ++GL LF M + +
Sbjct: 350 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 409
Query: 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMA 396
+P +KHYTC+VDLLGRAG LD+A +I SM ++ D +W LL AC IHKN ++A+
Sbjct: 410 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 469
Query: 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQ 456
K +L+ P + YVLL+NV+A+A RW+DV+++R M + +KK G +W E + ++HQ
Sbjct: 470 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 529
Query: 457 FSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIA 516
F +GD + +S+EIY L L+ +++L GY PDT LHD+DEE K +L HSEKLA+A
Sbjct: 530 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 589
Query: 517 FGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDY 576
F L+ PEG IRI+KNLRVC DCH K++S I R I +RD +RFHHF G CSC DY
Sbjct: 590 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 649
Query: 577 W 577
W
Sbjct: 650 W 650
Score = 69.7 bits (169), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 19/241 (7%)
Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
N E F+ F S PF I++C R+ + G+ +H +++ SG D+F+C L+
Sbjct: 28 NLREAFQRFRLNIFTNTSLFTPF-IQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLM 86
Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
MY+K A ++ +M ++ ++ ++I Y + G + +AR
Sbjct: 87 SMYSKLGDFPSAVAVYGRMRKKNYMSSNILING----------------YVRAGDLVNAR 130
Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
++FD M + + +W+AMIA ++ L LF M P+ T S+ +
Sbjct: 131 KVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLR 190
Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
V G ++ + + D+ + + + R G+L + +I SM V ++ W L
Sbjct: 191 SVSIGQQIHGYTI-KYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPV-RNLVAWNTL 248
Query: 381 L 381
+
Sbjct: 249 I 249
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/545 (37%), Positives = 316/545 (57%), Gaps = 58/545 (10%)
Query: 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVS---WSVMVGGFSKVADFINCFETFR 147
N + +KL+ ++++ + L A +F+ + + ++ W+ M G+S+ + +
Sbjct: 166 NPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYV 225
Query: 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207
+ + ++ ++++ ++AC D KD+ +GR IH ++K +DQ V L+ +Y +
Sbjct: 226 DMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESG 285
Query: 208 VIDDARQLFDQMPTRDLVTWTV------------------------MIGANKFLLDVILG 243
+ DDAR++FD M R++VTW MIG + L IL
Sbjct: 286 LFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILP 345
Query: 244 ------------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
+++DMY KCG ++ +R +FD M K++ S
Sbjct: 346 ACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLAS 405
Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
W+ M+ Y +G ++ ++LF M+ S V P+ ITFV+LL CS TGL E GL LF M
Sbjct: 406 WNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMK 465
Query: 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLA 393
+F V P ++HY C+VD+LGRAG++ EA+K+IE+M + +WG+LL +CR+H NV +
Sbjct: 466 TEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVG 525
Query: 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENK 453
E+AAK L +P NPG+YV++SN+YA+A W +V KIR++M +R +KK G +W++V++K
Sbjct: 526 EIAAKELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDK 585
Query: 454 IHQFSVGDSTHPQSEEIYRMLVT-LSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEK 512
I F G ++ + Y+ + T L E +E +GY P+T+ LHDVDEE K + HSE+
Sbjct: 586 IQIFVAGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSER 645
Query: 513 LAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACS 572
LA + LI T EG IRI KNLRVC DCHS++K VS +TRRVI++RD RFHHF G CS
Sbjct: 646 LATTYSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICS 705
Query: 573 CRDYW 577
C+DYW
Sbjct: 706 CKDYW 710
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/557 (36%), Positives = 301/557 (54%), Gaps = 56/557 (10%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+Q+HA V G + ++ V +Y + DA LF+ + ER+ +W+ +
Sbjct: 128 KQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 187
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
E F EF R +S T + AC D + +G +H +VL+SG D D VC
Sbjct: 188 GRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVC 247
Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA----------------------- 233
L+D Y KCK I + +F +M T++ V+W ++ A
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 307
Query: 234 -NKFLLDVIL------------------------------GTAVIDMYAKCGSIDSAREI 262
+ F++ +L G+A++DMY KCG I+ + +
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 367
Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTG 320
FD M +KN+++ +++I Y + GQ AL LF M PN +TFVSLL ACS G
Sbjct: 368 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427
Query: 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380
VE G+++F SM + + P +HY+C+VD+LGRAG ++ A + I+ M ++ +WGAL
Sbjct: 428 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487
Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
ACR+H L +AA++L + P++ G++VLLSN +A AGRW + +R+ + +K
Sbjct: 488 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 547
Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
K G++WI V+N++H F D +H ++EI L L ++E AGY PD L+D++EE
Sbjct: 548 KGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEE 607
Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
K + HSEKLA+AFGL++ P IRI KNLR+CGDCHSF K VS +R IIVRD
Sbjct: 608 EKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDN 667
Query: 561 NRFHHFEGGACSCRDYW 577
NRFH F+ G CSC+DYW
Sbjct: 668 NRFHRFKDGICSCKDYW 684
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 101/422 (23%), Positives = 176/422 (41%), Gaps = 72/422 (17%)
Query: 77 RQVHAQIVAG-GTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
R VHA+IV + +AN L+ +Y+ A + R+ VSW+ ++ G ++
Sbjct: 26 RVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQ 85
Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
F F E R G+ + +T P +A + V G+ IH + +K G +D FV
Sbjct: 86 NGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFV 145
Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVILGTAVIDM 249
+ DMY K ++ DDAR+LFD++P R+L TW I G + ++ + ID
Sbjct: 146 GCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDG 205
Query: 250 YAK----CGSIDSA-----------------REIFD-----------------RMRQKNV 271
+ C +++ R FD ++R +
Sbjct: 206 HPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEI 265
Query: 272 I----------SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
I SW +++AAY + + +KA L+ V + S+L AC+
Sbjct: 266 IFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAG 325
Query: 322 VEEGLRLFSSMWDDFAVRPDVKHY----TCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
+E G + + AV+ V+ + +VD+ G+ G ++++ + + M EK+
Sbjct: 326 LELGRSIHAH-----AVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP-EKNLVTR 379
Query: 378 GALLGACRIHKNVDLA-----EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432
+L+G VD+A EMA + N +V L + + AG ++ KI D
Sbjct: 380 NSLIGGYAHQGQVDMALALFEEMAPRGC--GPTPNYMTFVSLLSACSRAGAVENGMKIFD 437
Query: 433 LM 434
M
Sbjct: 438 SM 439
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/557 (36%), Positives = 315/557 (56%), Gaps = 55/557 (9%)
Query: 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
++++H + + N +VAN + YA +L+ A +F+G++ + SW+ ++GG ++
Sbjct: 414 LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQ 473
Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
D + + G+ DS+T+ ++ AC K + +G+ +H ++++ L+ D FV
Sbjct: 474 SNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV 533
Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIG---------------------- 232
+++ +Y C + + LFD M + LV+W TV+ G
Sbjct: 534 YLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGI 593
Query: 233 -----------------------------ANKFLL--DVILGTAVIDMYAKCGSIDSARE 261
A K LL D + ++IDMYAK GSI + +
Sbjct: 594 QLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSK 653
Query: 262 IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321
+F+ +++K+ SW+AMI YG HG K+A+ LF M + P+ +TF+ +L AC+H+GL
Sbjct: 654 VFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL 713
Query: 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGAL 380
+ EGLR M F ++P++KHY C++D+LGRAG+LD+AL+++ E MS E D G+W +L
Sbjct: 714 IHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSL 773
Query: 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440
L +CRIH+N+++ E A L E +P+ P +YVLLSN+YA G+W+DV K+R M L+
Sbjct: 774 LSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLR 833
Query: 441 KIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEE 500
K G +WIE+ K+ F VG+ EEI + L K+ GY PDT HD+ EE
Sbjct: 834 KDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEE 893
Query: 501 VKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDA 560
K+ L HSEKLA+ +GLI T EGT IR+ KNLR+C DCH+ K +S + R I+VRD
Sbjct: 894 EKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDN 953
Query: 561 NRFHHFEGGACSCRDYW 577
RFHHF+ G CSC DYW
Sbjct: 954 KRFHHFKNGVCSCGDYW 970
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/377 (25%), Positives = 163/377 (43%), Gaps = 68/377 (18%)
Query: 71 RNIFQIRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV 128
++I R++H Q+V+G T + ++ +++ +YA+ + D+ +F+ ++ ++ W+
Sbjct: 98 KDIEMGRKIH-QLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNA 156
Query: 129 MVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
++ +S+ + ETF E I L D +T P VI+AC D+ +G +H +V+K+
Sbjct: 157 VISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKT 216
Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI---------------- 231
GL D FV ALV Y + DA QLFD MP R+LV+W MI
Sbjct: 217 GLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLL 276
Query: 232 -------GANKFLLDV-----------------------------------ILGTAVIDM 249
G F+ DV +L A++DM
Sbjct: 277 GEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDM 336
Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNRI 307
Y+KCG I +A+ IF KNV+SW+ M+ + G D+ ML+ V + +
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396
Query: 308 TFVSLLYACSHTGLVEEGLRLFS-SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
T ++ + C H + L S+ +F V + V + G L A ++
Sbjct: 397 TILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVAN--AFVASYAKCGSLSYAQRVFH 454
Query: 367 SMSVEKDEGLWGALLGA 383
+ K W AL+G
Sbjct: 455 GIR-SKTVNSWNALIGG 470
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/407 (21%), Positives = 158/407 (38%), Gaps = 63/407 (15%)
Query: 71 RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
R I + VH V L++ N L+ +Y+ +T+A +F ++ VSW+ MV
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365
Query: 131 GGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188
GGFS D F+ R+ + G ++ D T+ + C + + +H LK
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 425
Query: 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN------KFLLDVIL 242
++ V A V YAKC + A+++F + ++ + +W +IG + + LD L
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485
Query: 243 ----------GTAVIDMYAKCGSIDSAR-------------------------------- 260
V + + C + S R
Sbjct: 486 QMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCG 545
Query: 261 ------EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314
+FD M K+++SW+ +I Y +G +AL +F M+ + I+ + +
Sbjct: 546 ELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFG 605
Query: 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE 374
ACS + G + + D ++D+ + G + ++ K+ + EK
Sbjct: 606 ACSLLPSLRLGREAHAYALKHL-LEDDAFIACSLIDMYAKNGSITQSSKVFNGLK-EKST 663
Query: 375 GLWGALLGACRIHKNVDLAEMAAKSL--LERQPQNPGHYVLLSNVYA 419
W A++ IH LA+ A K ++R NP L + A
Sbjct: 664 ASWNAMIMGYGIH---GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 127/321 (39%), Gaps = 70/321 (21%)
Query: 130 VGGFSKVADFINCFETFREFI------RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183
+ F + D F T +EF+ L L +++A RKDI MGR IH +
Sbjct: 50 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109
Query: 184 VLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDV 240
V S L D +C ++ MYA C DD+R +FD + +++L W +I + L D
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169
Query: 241 ILGT-----------------------------------------------------AVI 247
+L T A++
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALV 229
Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR----VL 303
Y G + A ++FD M ++N++SW++MI + +G +++ L M+ +
Sbjct: 230 SFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFM 289
Query: 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
P+ T V++L C+ E GL W + ++ ++D+ + G + A
Sbjct: 290 PDVATLVTVLPVCARER--EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA- 346
Query: 363 KLIESMSVEKDEGLWGALLGA 383
++I M+ K+ W ++G
Sbjct: 347 QMIFKMNNNKNVVSWNTMVGG 367
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/576 (36%), Positives = 316/576 (54%), Gaps = 60/576 (10%)
Query: 59 DPKFFISSLLSCRNIFQIRQ--VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFN 116
+P IS S R + QI+ + + I + LI +++ A LF
Sbjct: 31 NPILLISKCNSLRELMQIQAYAIKSHIEDVSFVAKLI---NFCTESPTESSMSYARHLFE 87
Query: 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM 176
M E D V ++ M G+S+ + + F F E + G+ D+YT P +++AC K +
Sbjct: 88 AMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE 147
Query: 177 GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM----------------- 219
GR +H + +K GLD + +VC L++MY +C+ +D AR +FD++
Sbjct: 148 GRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYAR 207
Query: 220 ---PTRDLVTWTVMIGA----------------------------------NKFLLDVIL 242
P L + M G + F V +
Sbjct: 208 RNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKV 267
Query: 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302
TA+IDM+AKCGS+D A IF++MR K+ +WSAMI AY HG+ +K++ +F M S V
Sbjct: 268 NTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENV 327
Query: 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362
P+ ITF+ LL ACSHTG VEEG + FS M F + P +KHY MVDLL RAG L++A
Sbjct: 328 QPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAY 387
Query: 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
+ I+ + + LW LL AC H N+DLAE ++ + E + G YV+LSN+YA
Sbjct: 388 EFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNK 447
Query: 423 RWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482
+W+ V +R +M R+ K+PG + IEV N +H+F GD + +++R L + ++L+
Sbjct: 448 KWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELK 507
Query: 483 LAGYIPDTNFELH-DVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCH 541
L+GY+PDT+ +H +++++ K L HSEKLAI FGL+ TP GT IR++KNLRVC DCH
Sbjct: 508 LSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCH 567
Query: 542 SFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+ K +S I R +++RD RFHHFE G CSC D+W
Sbjct: 568 NAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 218/596 (36%), Positives = 313/596 (52%), Gaps = 91/596 (15%)
Query: 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGG 132
+F+ ++H TL + V + +YA + A +F+ M RD V+W+ M+
Sbjct: 127 LFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIER 186
Query: 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192
+ + F+ F E + D L ++ AC ++ R I++ ++++ + +D
Sbjct: 187 YCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMD 246
Query: 193 QFVCAALVDMYA-------------------------------KCKVIDDARQLFDQMPT 221
+ ALV MYA KC +DDA+ +FDQ
Sbjct: 247 THLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEK 306
Query: 222 RDLVTWTVMIG-------------------------------------ANKFLLD----- 239
+DLV WT MI AN +LD
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366
Query: 240 ------------VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQG 287
+ + A+I+MYAKCG +D+ R++F++M ++NV+SWS+MI A HG+
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEA 426
Query: 288 KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347
AL LF M V PN +TFV +LY CSH+GLVEEG ++F+SM D++ + P ++HY C
Sbjct: 427 SDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGC 486
Query: 348 MVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
MVDL GRA L EAL++IESM V + +WG+L+ ACRIH ++L + AAK +LE +P +
Sbjct: 487 MVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDH 546
Query: 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQS 467
G VL+SN+YA RW+DV IR +M + + K G + I+ K H+F +GD H QS
Sbjct: 547 DGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQS 606
Query: 468 EEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527
EIY L + KL+LAGY+PD L DV+EE K + HSEKLA+ FGL+ +
Sbjct: 607 NEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEE 666
Query: 528 ------IRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
IRI+KNLRVC DCH F K VS + R IIVRD RFH ++ G CSCRDYW
Sbjct: 667 KDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/465 (20%), Positives = 191/465 (41%), Gaps = 101/465 (21%)
Query: 64 ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL--FNGMKER 121
+ L C+++ I+Q+HA I+ T+ N + + L + ++ ++AL F+ +
Sbjct: 16 LEKLSFCKSLNHIKQLHAHILR--TVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSP 73
Query: 122 -DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
+S+ ++ + S+ ++ ++ G +LD ++ +++A + G +
Sbjct: 74 PESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMEL 133
Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------- 231
H + K D FV +DMYA C I+ AR +FD+M RD+VTW MI
Sbjct: 134 HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193
Query: 232 ---------------------------------------GANKFLL--DVILGT----AV 246
+FL+ DV + T A+
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253
Query: 247 IDMYAKCGSIDSARE-------------------------------IFDRMRQKNVISWS 275
+ MYA G +D ARE IFD+ +K+++ W+
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313
Query: 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335
MI+AY ++AL +F M S + P+ ++ S++ AC++ G++++ + S + +
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373
Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEM 395
+ ++ ++++ + G LD + E M ++ W +++ A +H
Sbjct: 374 -GLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNVVSWSSMINALSMHGEAS---- 427
Query: 396 AAKSLLERQPQ---NPGHYVLLSNVY--ANAGRWQDVAKIRDLMT 435
A SL R Q P + +Y +++G ++ KI MT
Sbjct: 428 DALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMT 472
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 218/606 (35%), Positives = 325/606 (53%), Gaps = 91/606 (15%)
Query: 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHA--LFNGMKE 120
IS L C N+ QI+Q+H ++ G + + KL+ D +A + ++
Sbjct: 52 LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111
Query: 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180
R+ W+ ++ G++ F + + + S+T +++AC KD+ +GR
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171
Query: 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM--------------------- 219
H + +V ++DMY KC+ ID AR++FD+M
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231
Query: 220 ----------PTRDLVTWTVM--------------------------------------- 230
PT+D+V WT M
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 291
Query: 231 --IGANKFLL---------------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
+GA+K+ V++G+A+IDMY+KCG+++ A +F M KNV +
Sbjct: 292 AQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFT 351
Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332
+S+MI HG+ ++AL LF M++ + + PN +TFV L ACSH+GLV++G ++F SM
Sbjct: 352 YSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSM 411
Query: 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
+ F V+P HYTCMVDLLGR GRL EAL+LI++MSVE G+WGALLGACRIH N ++
Sbjct: 412 YQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEI 471
Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452
AE+AA+ L E +P G+Y+LLSNVYA+AG W V ++R L+ + LKK P +W+ +N
Sbjct: 472 AEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKN 531
Query: 453 -KIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSE 511
++H+F G+ HP S +I L L E+L + GY PD + +DV + K L H+E
Sbjct: 532 GQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTE 591
Query: 512 KLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGAC 571
KLA+AF L+ T + I IMKNLR+C DCH F++ S +T +VII+RD RFHHF G C
Sbjct: 592 KLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDC 651
Query: 572 SCRDYW 577
SC D+W
Sbjct: 652 SCGDFW 657
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 286/487 (58%), Gaps = 48/487 (9%)
Query: 92 LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIR 151
+I N ++ + ++ A +F+ M++RD+ +W M+ + + + + F + +
Sbjct: 265 VIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQK 324
Query: 152 CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211
G++ +L ++ C + GR +H A LV +C+ DD
Sbjct: 325 QGVRPSFPSLISILSVCATLASLQYGRQVH---------------AHLV----RCQFDDD 365
Query: 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV 271
V + + ++ MY KCG + A+ +FDR K++
Sbjct: 366 ----------------------------VYVASVLMTMYVKCGELVKAKLVFDRFSSKDI 397
Query: 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331
I W+++I+ Y HG G++AL +F M SS +PN++T +++L ACS+ G +EEGL +F S
Sbjct: 398 IMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFES 457
Query: 332 MWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVD 391
M F V P V+HY+C VD+LGRAG++D+A++LIESM+++ D +WGALLGAC+ H +D
Sbjct: 458 MESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLD 517
Query: 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVE 451
LAE+AAK L E +P N G YVLLS++ A+ +W DVA +R M + K PG +WIEV
Sbjct: 518 LAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVG 577
Query: 452 NKIHQFSVGD-STHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHS 510
K+H F+ G HP+ I ML L AGY PD + LHDVDEE KV +L HS
Sbjct: 578 KKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHS 637
Query: 511 EKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGA 570
E+LA+A+GL+ PEG IR+MKNLRVCGDCH+ IK +S +T R II+RDANRFHHF G
Sbjct: 638 ERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGE 697
Query: 571 CSCRDYW 577
CSCRDYW
Sbjct: 698 CSCRDYW 704
Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 71/338 (21%)
Query: 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK---VADFINCFETFREFIRC 152
N ++ Y + +A LF+ M ER+ VSW+ +V G+ K + + N FE E
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPE---- 107
Query: 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
+ S+T A+V Y + ++ +A
Sbjct: 108 -RNVVSWT-------------------------------------AMVKGYMQEGMVGEA 129
Query: 213 RQLFDQMPTRDLVTWTVMIG----------ANKF-----LLDVILGTAVIDMYAKCGSID 257
LF +MP R+ V+WTVM G A K + DV+ T +I + G +D
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189
Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
AR IFD MR++NV++W+ MI Y + + A LF +M +++ S+L +
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----TEVSWTSMLLGYT 245
Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
+G +E+ F M ++P V M+ G G + +A ++ + M ++D W
Sbjct: 246 LSGRIEDAEEFFEVM----PMKP-VIACNAMIVGFGEVGEISKARRVFDLME-DRDNATW 299
Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415
++ A K +L + + +++Q P L+S
Sbjct: 300 RGMIKAYE-RKGFELEALDLFAQMQKQGVRPSFPSLIS 336
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257
++V Y + +ARQLFD+M R++V+W ++ Y K I
Sbjct: 53 SIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSG----------------YIKNRMIV 96
Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317
AR +F+ M ++NV+SW+AM+ Y G +A LF M N +++ +
Sbjct: 97 EARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPER----NEVSWTVMFGGLI 152
Query: 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377
G +++ +L+ D DV T M+ L R GR+DEA + + M E++ W
Sbjct: 153 DDGRIDKARKLY-----DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMR-ERNVVTW 206
Query: 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPG-HYVLLSNVYANAGRWQDVAKIRDLM 434
++ R + VD+ A+ L E P+ + + Y +GR +D + ++M
Sbjct: 207 TTMITGYRQNNRVDV----ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 20/217 (9%)
Query: 29 ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF--FISSLLSCRNIFQI---RQVHAQI 83
A E G E ++ MQ + V P F IS L C + + RQVHA +
Sbjct: 305 AYERKGFELEALDLFAQMQ-------KQGVRPSFPSLISILSVCATLASLQYGRQVHAHL 357
Query: 84 VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143
V ++ VA+ L+ +Y L A +F+ +D + W+ ++ G++
Sbjct: 358 VRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEAL 417
Query: 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL----DIDQFVCAAL 199
+ F E G + TL ++ AC + G I + ++S ++ + C
Sbjct: 418 KIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFE-SMESKFCVTPTVEHYSCT-- 474
Query: 200 VDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANK 235
VDM + +D A +L + M + D W ++GA K
Sbjct: 475 VDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACK 511
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/597 (34%), Positives = 324/597 (54%), Gaps = 94/597 (15%)
Query: 71 RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV 130
R + + ++VH I G + +++ N+LL +YA +L DA +F+ M RD SW+VMV
Sbjct: 99 RALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMV 158
Query: 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI--------------------RACRD 170
G+++V + F E + DSY+ ++ R
Sbjct: 159 NGYAEVGLLEEARKLFDEMT----EKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS 214
Query: 171 RKDIVM----------------GRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQ 214
R +I G+ IH ++++GLD D+ + ++L+DMY KC ID+AR
Sbjct: 215 RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARN 274
Query: 215 LFDQMPTRDLVTWTVM--------------------IGA----NKFLLDVILG------- 243
+FD++ +D+V+WT M +G+ N++ +L
Sbjct: 275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTT 334
Query: 244 -----------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
++++DMY KCG+I+SA+ + D + +++SW+++I
Sbjct: 335 EELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGG 394
Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
+GQ +AL F ++L S P+ +TFV++L AC+H GLVE+GL F S+ + +
Sbjct: 395 CAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSH 454
Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
HYTC+VDLL R+GR ++ +I M ++ + LW ++LG C + N+DLAE AA+ L
Sbjct: 455 TSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQEL 514
Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
+ +P+NP YV ++N+YA AG+W++ K+R M + K PG +W E++ K H F
Sbjct: 515 FKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAA 574
Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
D++HP +I L L +K++ GY+P T+ LHDV++E K NL HSEKLA+AF ++
Sbjct: 575 DTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAIL 634
Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+T EGT I++ KNLR C DCH IK +S IT+R I VRD+ RFH FE G CSC DYW
Sbjct: 635 STEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 23/221 (10%)
Query: 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRD 223
+I+ C + + G+ +H+ + SG + L+ MYAKC + DAR++FD+MP RD
Sbjct: 91 LIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRD 150
Query: 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGY 283
L +W VM+ YA+ G ++ AR++FD M +K+ SW+AM+ Y
Sbjct: 151 LCSWNVMVNG----------------YAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVK 194
Query: 284 HGQGKKALDLFPMML---SSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
Q ++AL L+ +M +SR PN T + A + + G + + +
Sbjct: 195 KDQPEEALVLYSLMQRVPNSR--PNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA-GLDS 251
Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381
D ++ ++D+ G+ G +DEA + + + VEKD W +++
Sbjct: 252 DEVLWSSLMDMYGKCGCIDEARNIFDKI-VEKDVVSWTSMI 291
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 34/152 (22%)
Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG--------------------- 325
G+K L +L P T+ +L+ CS T +EEG
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNR 125
Query: 326 -LRLFS---------SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375
LR+++ ++D+ R D+ + MV+ G L+EA KL + M+ EKD
Sbjct: 126 LLRMYAKCGSLVDARKVFDEMPNR-DLCSWNVMVNGYAEVGLLEEARKLFDEMT-EKDSY 183
Query: 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407
W A++ + K+ + SL++R P +
Sbjct: 184 SWTAMVTG-YVKKDQPEEALVLYSLMQRVPNS 214
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/573 (36%), Positives = 322/573 (56%), Gaps = 64/573 (11%)
Query: 62 FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF--NGMK 119
F + S S +Q+H + GG T V L+ +Y + DA +F N
Sbjct: 58 FILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS 117
Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179
+ SV ++ ++ G++ + + FR G+ +DS T+ ++ C + + +GR
Sbjct: 118 SQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177
Query: 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR-------------------------- 213
+H +K GLD + V + + MY KC ++ R
Sbjct: 178 LHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237
Query: 214 -----QLFDQMPTR----------DLVTWTVMIGA-------------NKFLLDVILGTA 245
+L++QM + +++ +GA N F+ +V + A
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNA 297
Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305
I MYA+CG++ AR +FD M K+++SW+AMI YG HG G+ L LF M+ + P+
Sbjct: 298 SISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357
Query: 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365
FV +L ACSH+GL ++GL LF +M ++ + P +HY+C+VDLLGRAGRLDEA++ I
Sbjct: 358 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 417
Query: 366 ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQ 425
ESM VE D +WGALLGAC+IHKNVD+AE+A ++E +P N G+YVL+SN+Y+++ +
Sbjct: 418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQE 477
Query: 426 DVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL-SEKLELA 484
+ +IR +M R +K PG++++E + ++H F GD +H Q+EE++RML L + +ELA
Sbjct: 478 GIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA 537
Query: 485 GYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFI 544
G N + D EEV HSE+LAIAFG++ + GT I ++KNLRVC DCH F+
Sbjct: 538 G-----NMDC-DRGEEVS-STTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFL 590
Query: 545 KHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
K VS I R +VRDA+RFH+F+ G CSC+DYW
Sbjct: 591 KQVSKIVDRQFVVRDASRFHYFKDGVCSCKDYW 623
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 167/379 (44%), Gaps = 60/379 (15%)
Query: 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHD 182
S W+V + + + F +R +R G D+++ PF++++C V G+ +H
Sbjct: 18 STPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHC 77
Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP--TRDLVTWTVMIG---ANKFL 237
V K G + + FV AL+ MY KC ++ DAR++F++ P ++ V + +I AN +
Sbjct: 78 HVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKV 137
Query: 238 LD------------------VILGTAVI-----------DMYAKC--GSIDS-------- 258
D +LG + ++ +C G +DS
Sbjct: 138 TDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSF 197
Query: 259 ------------AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR 306
R +FD M K +I+W+A+I+ Y +G L+L+ M SS V P+
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDP 257
Query: 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366
T VS+L +C+H G + G + + + P+V + + R G L +A + +
Sbjct: 258 FTLVSVLSSCAHLGAKKIGHEV-GKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFD 316
Query: 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH-YVLLSNVYANAGRWQ 425
M V K W A++G +H ++ M +++R + G +V++ + +++G
Sbjct: 317 IMPV-KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTD 375
Query: 426 DVAKIRDLMTRRRLKKIPG 444
++ M +R K PG
Sbjct: 376 KGLELFRAM-KREYKLEPG 393
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/477 (42%), Positives = 284/477 (59%), Gaps = 48/477 (10%)
Query: 102 YALHKALTDAHALFNGMK-ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160
Y K + A A+F M ++ V+W+ M+ G+ + + + + FR + G++ +S
Sbjct: 227 YMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSG 286
Query: 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220
L + C + + +GR IH IV KS L C
Sbjct: 287 LSSALLGCSELSALQLGRQIHQIVSKSTL----------------CN------------- 317
Query: 221 TRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280
DV T++I MY KCG + A ++F+ M++K+V++W+AMI+
Sbjct: 318 ------------------DVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISG 359
Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
Y HG KAL LF M+ +++ P+ ITFV++L AC+H GLV G+ F SM D+ V P
Sbjct: 360 YAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEP 419
Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
HYTCMVDLLGRAG+L+EALKLI SM ++G LLGACR+HKNV+LAE AA+ L
Sbjct: 420 QPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKL 479
Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
L+ QN YV L+N+YA+ RW+DVA++R M + K+PG++WIE+ NK+H F
Sbjct: 480 LQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSS 539
Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
D HP+ + I++ L L +K++LAGY P+ F LH+V+EE K L HSEKLA+AFG I
Sbjct: 540 DRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCI 599
Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
P+G+ I++ KNLR+CGDCH IK +S I +R IIVRD RFHHF+ G+CSC DYW
Sbjct: 600 KLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 133/314 (42%), Gaps = 28/314 (8%)
Query: 82 QIVAGGTLTNLIVANKLLY-IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFI 140
++ G N I N LL I + +AH LF+ + E D+ S+++M+ + + +
Sbjct: 82 RVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVN-- 139
Query: 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200
FE + F D+ + +I R ++ R + S ++ ++ A++
Sbjct: 140 --FEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL----FYSMMEKNEVSWNAMI 193
Query: 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260
Y +C ++ A F P R +V WT MI Y K ++ A
Sbjct: 194 SGYIECGDLEKASHFFKVAPVRGVVAWTAMITG----------------YMKAKKVELAE 237
Query: 261 EIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319
+F M KN+++W+AMI+ Y + + + L LF ML + PN S L CS
Sbjct: 238 AMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL 297
Query: 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379
++ G R + + DV T ++ + + G L +A KL E M +KD W A
Sbjct: 298 SALQLG-RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNA 355
Query: 380 LLGACRIHKNVDLA 393
++ H N D A
Sbjct: 356 MISGYAQHGNADKA 369
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 38/255 (14%)
Query: 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251
D F ++ Y + + A+ FD+MP +D +W MI YA
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITG----------------YA 166
Query: 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR--ITF 309
+ G ++ ARE+F M +KN +SW+AMI+ Y G +KA F +V P R + +
Sbjct: 167 RRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFF------KVAPVRGVVAW 220
Query: 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369
+++ VE L +M+ D V ++ + M+ R ++ LKL +M
Sbjct: 221 TAMITGYMKAKKVE----LAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAML 276
Query: 370 VE----KDEGLWGALLGACRIHK---NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422
E GL ALLG + + ++ +KS L + L ++Y G
Sbjct: 277 EEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL---CNDVTALTSLISMYCKCG 333
Query: 423 RWQDVAKIRDLMTRR 437
D K+ ++M ++
Sbjct: 334 ELGDAWKLFEVMKKK 348
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV--- 302
+I + G ID A +F MR KN I+W++++ + D MM + ++
Sbjct: 67 IIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGI--------SKDPSRMMEAHQLFDE 118
Query: 303 LPNRITF-VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
+P TF +++ +C + E + F +D + D + M+ R G +++A
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSF---FDRMPFK-DAASWNTMITGYARRGEMEKA 174
Query: 362 LKLIESMSVEKDEGLWGALLGA 383
+L SM +EK+E W A++
Sbjct: 175 RELFYSM-MEKNEVSWNAMISG 195
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/603 (34%), Positives = 329/603 (54%), Gaps = 69/603 (11%)
Query: 42 PRVPMQMGPDCQFTRSVDPKFFISSLLSC----RNIFQIRQVHAQIVAGGTLTNLIVANK 97
PR ++ D + KF +SS+ S N+ +Q+H+ + G + + V
Sbjct: 250 PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECS 307
Query: 98 LLYIYALHKA---LTDAHALFNGMKERDSVSWSVMVGGFSKVADF-INCFETFREFIRCG 153
L+ +YA A + D +F+ M++ +SW+ ++ G+ K + F E I G
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367
Query: 154 -MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212
++ + +T +AC + D +G+ + K GL + V +++ M+ K ++DA
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427
Query: 213 RQLFDQMPTRDLVTWTVMI------------------------GANKFLLDVILG----- 243
++ F+ + ++LV++ + G + F +L
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487
Query: 244 -------------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
A+I MY+KCGSID+A +F+ M +NVISW++MI
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547
Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
+ HG + L+ F M+ V PN +T+V++L ACSH GLV EG R F+SM++D +
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607
Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
+P ++HY CMVDLL RAG L +A + I +M + D +W LGACR+H N +L ++AA+
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667
Query: 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
+LE P P Y+ LSN+YA AG+W++ ++R M R L K G +WIEV +KIH+F
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727
Query: 459 VGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGN----LYSHSEKLA 514
VGD+ HP + +IY L L +++ GY+PDT+ LH ++EE LY HSEK+A
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787
Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
+AFGLI+T + +R+ KNLRVCGDCH+ +K++S ++ R I++RD NRFHHF+ G CSC
Sbjct: 788 VAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCN 847
Query: 575 DYW 577
DYW
Sbjct: 848 DYW 850
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 107/415 (25%), Positives = 191/415 (46%), Gaps = 69/415 (16%)
Query: 56 RSVDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAH 112
R +D F S L SC R+ + VHA+++ + ++ N L+ +Y+ A
Sbjct: 58 RPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE 117
Query: 113 ALFNGMK---ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACR 169
+F M+ +RD VSWS M+ + ++ + F EF+ G+ + Y VIRAC
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS 177
Query: 170 DRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCK-VIDDARQLFDQMPTRDLVTW 227
+ + +GR+ ++K+G + D V +L+DM+ K + ++A ++FD+M ++VTW
Sbjct: 178 NSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTW 237
Query: 228 TVMIG----------ANKFLLDVILG---------------------------------- 243
T+MI A +F LD++L
Sbjct: 238 TLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIR 297
Query: 244 --------TAVIDMYAKC---GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQ-GKKAL 291
+++DMYAKC GS+D R++FDRM +V+SW+A+I Y + +A+
Sbjct: 298 SGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAI 357
Query: 292 DLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350
+LF M++ V PN TF S AC + G ++ + + + ++
Sbjct: 358 NLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSVANSVIS 416
Query: 351 LLGRAGRLDEALKLIESMSVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQ 404
+ ++ R+++A + ES+S EK+ + L G CR + N + A + ER+
Sbjct: 417 MFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCR-NLNFEQAFKLLSEITERE 469
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/517 (39%), Positives = 309/517 (59%), Gaps = 20/517 (3%)
Query: 64 ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDS 123
+S+ RN+ RQV + I NL +AN +L +Y ++ DA LF+ M+E+D+
Sbjct: 239 LSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDN 298
Query: 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI-HD 182
V+W+ M+ G++ D+ E RE + Q D +I A ++ H+
Sbjct: 299 VTWTTMLDGYAISEDY----EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHE 354
Query: 183 IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT-VMIGANKFLLDVI 241
+ L+ + ++Q LV + C Q+ +L W I + ++
Sbjct: 355 LQLQKNMKLNQIT---LVSTLSACA----------QVGALELGRWIHSYIKKHGIRMNFH 401
Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
+ +A+I MY+KCG ++ +RE+F+ + +++V WSAMI HG G +A+D+F M +
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461
Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
V PN +TF ++ ACSHTGLV+E LF M ++ + P+ KHY C+VD+LGR+G L++A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521
Query: 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421
+K IE+M + +WGALLGAC+IH N++LAEMA LLE +P+N G +VLLSN+YA
Sbjct: 522 VKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKL 581
Query: 422 GRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKL 481
G+W++V+++R M LKK PG + IE++ IH+F GD+ HP SE++Y L + EKL
Sbjct: 582 GKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKL 641
Query: 482 ELAGYIPDTNFELHDV-DEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDC 540
+ GY P+ + L + +EE+K +L HSEKLAI +GLI+T IR++KNLRVCGDC
Sbjct: 642 KSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRVIKNLRVCGDC 701
Query: 541 HSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
HS K +S + R IIVRD RFHHF G CSC D+W
Sbjct: 702 HSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 169/327 (51%), Gaps = 19/327 (5%)
Query: 62 FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
F I + ++ + +H V +++ VAN L++ Y L A +F +KE+
Sbjct: 136 FLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 195
Query: 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181
D VSW+ M+ GF + E F++ ++ T+ V+ AC +++ GR +
Sbjct: 196 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC 255
Query: 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241
+ ++ ++++ + A++DMY KC I+DA++LFD M +D VTWT M
Sbjct: 256 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM----------- 304
Query: 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSS 300
+D YA ++ARE+ + M QK++++W+A+I+AY +G+ +AL +F + L
Sbjct: 305 -----LDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQK 359
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
+ N+IT VS L AC+ G +E G R S +R + + ++ + + G L++
Sbjct: 360 NMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEK 418
Query: 361 ALKLIESMSVEKDEGLWGALLGACRIH 387
+ ++ S+ ++D +W A++G +H
Sbjct: 419 SREVFNSVE-KRDVFVWSAMIGGLAMH 444
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 165/368 (44%), Gaps = 57/368 (15%)
Query: 42 PRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101
PR P P+ Q T + + IS + C ++ Q++Q H ++ GT ++ A+KL +
Sbjct: 13 PRHPNFSNPN-QPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAM 71
Query: 102 YALHK--ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFI-RCGMQLDS 158
AL +L A +F+ + + +S +W+ ++ ++ D + F + + +
Sbjct: 72 AALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNK 131
Query: 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218
YT PF+I+A + + +G+ +H + +KS + D FV +L+ Y C +D A ++F
Sbjct: 132 YTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTT 191
Query: 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278
+ +D+V+W MI + + GS D A E+F +M ++V +
Sbjct: 192 IKEKDVVSWNSMING----------------FVQKGSPDKALELFKKMESEDVKA----- 230
Query: 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338
+ +T V +L AC+ +E G R S ++ V
Sbjct: 231 --------------------------SHVTMVGVLSACAKIRNLEFG-RQVCSYIEENRV 263
Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398
++ M+D+ + G +++A +L ++M EKD W +L I ++ + AA+
Sbjct: 264 NVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE----AAR 318
Query: 399 SLLERQPQ 406
+L PQ
Sbjct: 319 EVLNSMPQ 326
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/611 (34%), Positives = 340/611 (55%), Gaps = 95/611 (15%)
Query: 60 PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI----YALHKA---LTDAH 112
PK ++ L SC + ++ +H ++ ++++ VA++LL + +K L A+
Sbjct: 14 PK--LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAY 71
Query: 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172
+F+ ++ + +++++ FS A+ F + + ++ + D+ T PF+I+A + +
Sbjct: 72 GIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEME 131
Query: 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA---------------------------- 204
+++G H +++ G D +V +LV MYA
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 205 ---KCKVIDDARQLFDQMPTRDLVTWTVMI------------------------------ 231
KC ++++AR++FD+MP R+L TW++MI
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251
Query: 232 -----------GANKF-------------LLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267
GA +F +++ILGTA++DM+ +CG I+ A +F+ +
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLP 311
Query: 268 QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327
+ + +SWS++I HG KA+ F M+S +P +TF ++L ACSH GLVE+GL
Sbjct: 312 ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLE 371
Query: 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387
++ +M D + P ++HY C+VD+LGRAG+L EA I M V+ + + GALLGAC+I+
Sbjct: 372 IYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIY 431
Query: 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447
KN ++AE L++ +P++ G+YVLLSN+YA AG+W + +RD+M + +KK PGW+
Sbjct: 432 KNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSL 491
Query: 448 IEVENKIHQFSVG-DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNL 506
IE++ KI++F++G D HP+ +I R + K+ L GY +T DVDEE K ++
Sbjct: 492 IEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSI 551
Query: 507 YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHF 566
+ HSEKLAIA+G++ T GT IRI+KNLRVC DCH+ K +S + R +IVRD NRFHHF
Sbjct: 552 HMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHF 611
Query: 567 EGGACSCRDYW 577
G CSCRDYW
Sbjct: 612 RNGVCSCRDYW 622
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 382 bits (982), Expect = e-105, Method: Compositional matrix adjust.
Identities = 212/603 (35%), Positives = 328/603 (54%), Gaps = 87/603 (14%)
Query: 62 FFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER 121
F + S + + +Q+H ++ G +L V L+ +Y + L DAH +F+ R
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198
Query: 122 DSVS-------------------------------WSVMVGGFSKVADFINCFETFREFI 150
D VS W+ M+ G+++ ++ E F++ +
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210
+ ++ D T+ V+ AC I +GR +H + G + + AL+D+Y+KC ++
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318
Query: 211 -------------------------------DARQLFDQM----PTRDLVTWTVMIGANK 235
+A LF +M T + VT ++ A
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378
Query: 236 FLLDVILG---------------------TAVIDMYAKCGSIDSAREIFDRMRQKNVISW 274
L + +G T++IDMYAKCG I++A ++F+ + K++ SW
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334
+AMI + HG+ + DLF M + P+ ITFV LL ACSH+G+++ G +F +M
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498
Query: 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394
D+ + P ++HY CM+DLLG +G EA ++I M +E D +W +LL AC++H NV+L E
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558
Query: 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454
A++L++ +P+NPG YVLLSN+YA+AGRW +VAK R L+ + +KK+PG + IE+++ +
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618
Query: 455 HQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLA 514
H+F +GD HP++ EIY ML + LE AG++PDT+ L +++EE K G L HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678
Query: 515 IAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCR 574
IAFGLI+T GT + I+KNLRVC +CH K +S I +R II RD RFHHF G CSC
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738
Query: 575 DYW 577
DYW
Sbjct: 739 DYW 741
Score = 172 bits (435), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 201/402 (50%), Gaps = 38/402 (9%)
Query: 44 VPMQMGPDCQFTRSVDPKF-------FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVAN 96
VP P S DP + +S L +C+ + +R +HAQ++ G +
Sbjct: 10 VPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALS 69
Query: 97 KLLYIYALH---KALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCG 153
KL+ L + L A ++F ++E + + W+ M G + +D ++ + + I G
Sbjct: 70 KLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLG 129
Query: 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213
+ +SYT PFV+++C K G+ IH VLK G D+D +V +L+ MY + ++DA
Sbjct: 130 LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAH 189
Query: 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273
++FD+ P RD+V++ TA+I YA G I++A+++FD + K+V+S
Sbjct: 190 KVFDKSPHRDVVSY----------------TALIKGYASRGYIENAQKLFDEIPVKDVVS 233
Query: 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333
W+AMI+ Y G K+AL+LF M+ + V P+ T V+++ AC+ +G +E G ++ +W
Sbjct: 234 WNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV--HLW 291
Query: 334 -DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDL 392
DD ++K ++DL + G L+ A L E + KD W L+G H N+
Sbjct: 292 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY-KDVISWNTLIGG-YTHMNLYK 349
Query: 393 AEMAAKSLLERQPQNPGHYVLLSNVYANA-------GRWQDV 427
+ + R + P +LS + A A GRW V
Sbjct: 350 EALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 198/537 (36%), Positives = 300/537 (55%), Gaps = 55/537 (10%)
Query: 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155
N LL +Y+ L A A+F M +R VS++ M+ G+++ + F E G+
Sbjct: 335 NTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394
Query: 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215
D YT+ V+ C + + G+ +H+ + ++ L D FV AL+DMYAKC + +A +
Sbjct: 395 PDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELV 454
Query: 216 FDQMPTRDLVTWTVMIGA--------------------NKFLLDVILGTAVIDMYAKCGS 255
F +M +D+++W +IG +F D V+ A +
Sbjct: 455 FSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSA 514
Query: 256 IDSAREI-----------------------------------FDRMRQKNVISWSAMIAA 280
D REI FD + K+++SW+ MIA
Sbjct: 515 FDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAG 574
Query: 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
YG HG GK+A+ LF M + + + I+FVSLLYACSH+GLV+EG R F+ M + + P
Sbjct: 575 YGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 634
Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
V+HY C+VD+L R G L +A + IE+M + D +WGALL CRIH +V LAE A+ +
Sbjct: 635 TVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKV 694
Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
E +P+N G+YVL++N+YA A +W+ V ++R + +R L+K PG +WIE++ +++ F G
Sbjct: 695 FELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAG 754
Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
DS++P++E I L + ++ GY P T + L D +E K L HSEKLA+A G+I
Sbjct: 755 DSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGII 814
Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
++ G IR+ KNLRVCGDCH K +S +TRR I++RD+NRFH F+ G CSCR +W
Sbjct: 815 SSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 177/383 (46%), Gaps = 59/383 (15%)
Query: 58 VDPKFFISSLLSC---RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
+DP+ S L C +++ ++V I G + + + +KL +Y L +A +
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174
F+ +K ++ W++++ +K DF F++ + G+++DSYT V ++ + +
Sbjct: 152 FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 211
Query: 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--- 231
G +H +LKSG V +LV Y K + +D AR++FD+M RD+++W +I
Sbjct: 212 HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271
Query: 232 --------GANKFLLDVI------------------------LGTAV------------- 246
G + F+ ++ LG AV
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331
Query: 247 ------IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
+DMY+KCG +DSA+ +F M ++V+S+++MIA Y G +A+ LF M
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391
Query: 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360
+ P+ T ++L C+ L++EG R+ + ++ + D+ ++D+ + G + E
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSMQE 450
Query: 361 ALKLIESMSVEKDEGLWGALLGA 383
A + M V KD W ++G
Sbjct: 451 AELVFSEMRV-KDIISWNTIIGG 472
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
R++H I+ G ++ VAN L+ +YA AL AH LF+ + +D VSW+VM+ G+
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV---LKSGLDIDQ 193
F + + G++ D + ++ AC + G +I+ K ++
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEH 638
Query: 194 FVCAALVDMYAKCKVIDDARQLFDQMPT-RDLVTWTVMIGANKFLLDVILGTAVID 248
+ C +VDM A+ + A + + MP D W ++ + DV L V +
Sbjct: 639 YAC--IVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAE 692
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 208/555 (37%), Positives = 300/555 (54%), Gaps = 54/555 (9%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
Q+H+QI+ N V + L+ +YA L A + +D VSW+ M+ G+++
Sbjct: 510 EQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQY 569
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC 196
TFR+ + G++ D L + AC + + G+ IH SG D
Sbjct: 570 NFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQ 629
Query: 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI------GANKFLLDVIL-------- 242
ALV +Y++C I+++ F+Q D + W ++ G N+ L V +
Sbjct: 630 NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID 689
Query: 243 ------GTAV----------------------------------IDMYAKCGSIDSAREI 262
G+AV I MYAKCGSI A +
Sbjct: 690 NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 749
Query: 263 FDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322
F + KN +SW+A+I AY HG G +ALD F M+ S V PN +T V +L ACSH GLV
Sbjct: 750 FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 809
Query: 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
++G+ F SM ++ + P +HY C+VD+L RAG L A + I+ M ++ D +W LL
Sbjct: 810 DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869
Query: 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442
AC +HKN+++ E AA LLE +P++ YVLLSN+YA + +W R M + +KK
Sbjct: 870 ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929
Query: 443 PGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK 502
PG +WIEV+N IH F VGD HP ++EI+ L+++ GY+ D L+++ E K
Sbjct: 930 PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQK 989
Query: 503 VGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANR 562
++ HSEKLAI+FGL++ P I +MKNLRVC DCH++IK VS ++ R IIVRDA R
Sbjct: 990 DPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYR 1049
Query: 563 FHHFEGGACSCRDYW 577
FHHFEGGACSC+DYW
Sbjct: 1050 FHHFEGGACSCKDYW 1064
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/386 (22%), Positives = 166/386 (43%), Gaps = 59/386 (15%)
Query: 59 DPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALF 115
D S +++C +F+ +Q+HA G +N + LL +YA + A F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447
Query: 116 NGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
+ + V W+VM+ + + D N F FR+ + + YT P +++ C D+
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507
Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI-GAN 234
+G IH ++K+ ++ +VC+ L+DMYAK +D A + + +D+V+WT MI G
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567
Query: 235 KFLLD-------------------VILGTAV----------------------------- 246
++ D V L AV
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 247 -----IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
+ +Y++CG I+ + F++ + I+W+A+++ + G ++AL +F M
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREG 687
Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361
+ N TF S + A S T +++G ++ + + + + ++ + + G + +A
Sbjct: 688 IDNNNFTFGSAVKAASETANMKQGKQVHAVI-TKTGYDSETEVCNALISMYAKCGSISDA 746
Query: 362 LKLIESMSVEKDEGLWGALLGACRIH 387
K +S K+E W A++ A H
Sbjct: 747 EKQFLEVST-KNEVSWNAIINAYSKH 771
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/382 (22%), Positives = 163/382 (42%), Gaps = 38/382 (9%)
Query: 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
+ Q+HA+I+ G + +V N L+ +Y+ + + A +F+G++ +D SW M+ G SK
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSK 265
Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
F + G+ Y V+ AC+ + + +G +H +VLK G D +V
Sbjct: 266 NECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 325
Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255
C ALV +Y + A +F M RD VT+ +I ++CG
Sbjct: 326 CNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING----------------LSQCGY 369
Query: 256 IDSAREIFDRMR----QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311
+ A E+F RM + + + ++++ A G + L N +
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429
Query: 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE---ALKLIESM 368
LL + +E L D+ + +V++ +L G LD+ + ++ M
Sbjct: 430 LLNLYAKCADIETAL--------DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM 481
Query: 369 SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRW 424
+E+ ++ + ++L C +++L E +++ Q N +L ++YA G+
Sbjct: 482 QIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKL 541
Query: 425 QDVAKIRDLMTRRRLKKIPGWT 446
D A D++ R K + WT
Sbjct: 542 -DTA--WDILIRFAGKDVVSWT 560
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 96/349 (27%)
Query: 131 GGFSKVADFINCFETFRE-----FIRCGMQLDSYTLPFVIRAC-RDRKDIVMGRLIHDIV 184
F+ ++ +I+ E+F+E G++ + TL +++ C + + GR +H +
Sbjct: 52 ASFAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQI 111
Query: 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG--ANKFLLDVIL 242
LK GLD + + L D Y + A ++FD+MP R + TW MI A++ L+ +
Sbjct: 112 LKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVF 171
Query: 243 G-----------------------------------------------------TAVIDM 249
G +ID+
Sbjct: 172 GLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDL 231
Query: 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309
Y++ G +D AR +FD +R K+ SW AMI+ + +A+ LF M ++P F
Sbjct: 232 YSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAF 291
Query: 310 VSLLYACSHTGLVEEGLRL--------FSS-----------------------MWDDFAV 338
S+L AC +E G +L FSS ++ + +
Sbjct: 292 SSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ 351
Query: 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGAC 384
R D Y +++ L + G ++A++L + M +E D +L+ AC
Sbjct: 352 R-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVAC 399
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/511 (38%), Positives = 295/511 (57%), Gaps = 59/511 (11%)
Query: 79 VHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGF----- 133
+H +V G + V N L+ +Y+ + A +F M++RD V+W+ M+ G+
Sbjct: 427 IHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEH 486
Query: 134 -SKVADFINCFETFREFI-----RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
++ + + R ++ +S TL ++ +C + G+ IH +K
Sbjct: 487 HEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIK- 545
Query: 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247
N DV +G+A++
Sbjct: 546 ----------------------------------------------NNLATDVAVGSALV 559
Query: 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307
DMYAKCG + +R++FD++ QKNVI+W+ +I AYG HG G++A+DL MM+ V PN +
Sbjct: 560 DMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEV 619
Query: 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367
TF+S+ ACSH+G+V+EGLR+F M D+ V P HY C+VDLLGRAGR+ EA +L+
Sbjct: 620 TFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNM 679
Query: 368 MSVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426
M + ++ G W +LLGA RIH N+++ E+AA++L++ +P HYVLL+N+Y++AG W
Sbjct: 680 MPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDK 739
Query: 427 VAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486
++R M + ++K PG +WIE +++H+F GDS+HPQSE++ L TL E++ GY
Sbjct: 740 ATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGY 799
Query: 487 IPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKH 546
+PDT+ LH+V+E+ K L HSEKLAIAFG++ T GT IR+ KNLRVC DCH K
Sbjct: 800 VPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKF 859
Query: 547 VSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+S I R II+RD RFH F+ G CSC DYW
Sbjct: 860 ISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 105 bits (263), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 63/365 (17%)
Query: 77 RQVHAQIVA-GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
+Q+HA + G + ++ VAN L+ +Y + +F+ + ER+ VSW+ ++
Sbjct: 117 KQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 176
Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRD---RKDIVMGRLIHDIVLKSGLDID 192
+ E FR + ++ S+TL V+ AC + + ++MG+ +H L+ G +++
Sbjct: 177 FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELN 235
Query: 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFLLDVI-------- 241
F+ LV MY K + ++ L RDLVTW ++ + N+ LL+ +
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295
Query: 242 --------------------------------------------LGTAVIDMYAKCGSID 257
+G+A++DMY C +
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVL 355
Query: 258 SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLF-PMMLSSRVLPNRITFVSLLYAC 316
S R +FD M + + W+AMIA Y + K+AL LF M S+ +L N T ++ AC
Sbjct: 356 SGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPAC 415
Query: 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGL 376
+G + + R T M D+ R G++D A+++ M ++D
Sbjct: 416 VRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVT 473
Query: 377 WGALL 381
W ++
Sbjct: 474 WNTMI 478
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 100/424 (23%), Positives = 178/424 (41%), Gaps = 84/424 (19%)
Query: 52 CQFTRSVDPKFF--ISSLLSCRNI------FQIRQVHAQIVAGGTLTNLIVANKLLYIYA 103
C +V+P F +S + +C N+ +QVHA + G L + I+ N L+ +Y
Sbjct: 189 CMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-NTLVAMYG 247
Query: 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF 163
L + L RD V+W+ ++ + + E RE + G++ D +T+
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307
Query: 164 VIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222
V+ AC + + G+ +H LK+G LD + FV +ALVDMY CK + R++FD M R
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDR 367
Query: 223 DLVTWTVMIGA------NKFLLDVILG--------------TAVIDMYAKCGSIDSAREI 262
+ W MI +K L + +G V+ + G+ I
Sbjct: 368 KIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427
Query: 263 --------FDR---------------------------MRQKNVISWSAMIAAYGYHGQG 287
DR M +++++W+ MI Y +
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487
Query: 288 KKALDLFPMML---------SSRV--LPNRITFVSLLYACSHTGLVEEGLRLFS-SMWDD 335
+ AL L M +SRV PN IT +++L +C+ + +G + + ++ ++
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547
Query: 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKN----VD 391
A DV + +VD+ + G L + K+ + + +K+ W ++ A +H N +D
Sbjct: 548 LAT--DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQEAID 604
Query: 392 LAEM 395
L M
Sbjct: 605 LLRM 608
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 51/261 (19%)
Query: 145 TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204
T+ + I G++ D+Y P +++A D +D+ +G+ IH V K G +D
Sbjct: 84 TYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDS----------- 132
Query: 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264
V + ++++Y KCG + ++FD
Sbjct: 133 -----------------------------------VTVANTLVNLYRKCGDFGAVYKVFD 157
Query: 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324
R+ ++N +SW+++I++ + + AL+ F ML V P+ T VS++ ACS+ + E
Sbjct: 158 RISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PE 216
Query: 325 GLRLFSSMWDDFAVRPDVKHY--TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLG 382
GL + + + ++ + +V + G+ G+L + L+ S +D W +L
Sbjct: 217 GLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG-GRDLVTWNTVLS 275
Query: 383 A-CRIHKNVDLAEMAAKSLLE 402
+ C+ + ++ E + +LE
Sbjct: 276 SLCQNEQLLEALEYLREMVLE 296
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/217 (19%), Positives = 97/217 (44%), Gaps = 23/217 (10%)
Query: 77 RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKV 136
+++HA + T++ V + L+ +YA L + +F+ + +++ ++W+V++ +
Sbjct: 537 KEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMH 596
Query: 137 ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG-RLIHDIVLKSGLDIDQFV 195
+ + R + G++ + T V AC + G R+ + + G++
Sbjct: 597 GNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDH 656
Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLV---TWTVMIGANKFLLDVILG--------- 243
A +VD+ + I +A QL + MP RD W+ ++GA++ ++ +G
Sbjct: 657 YACVVDLLGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQ 715
Query: 244 ---------TAVIDMYAKCGSIDSAREIFDRMRQKNV 271
+ ++Y+ G D A E+ M+++ V
Sbjct: 716 LEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/559 (37%), Positives = 300/559 (53%), Gaps = 56/559 (10%)
Query: 75 QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFS 134
Q++++HA ++ G + +LL + + A +F+ M + W+ + G+
Sbjct: 26 QLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYV 85
Query: 135 KVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQF 194
+ +++ G++ D +T PFV++A D G +H V+K G
Sbjct: 86 RNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI 145
Query: 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------NKFLLD- 239
V LV MY K + A LF+ M +DLV W + NK D
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADA 205
Query: 240 ---------------------------------------VILGTAVIDMYAKCGSIDSAR 260
+I+ A +DM+ KCG+ ++AR
Sbjct: 206 VQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAAR 265
Query: 261 EIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320
+F+ M+Q+NV+SWS MI Y +G ++AL LF M + + PN +TF+ +L ACSH G
Sbjct: 266 VLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAG 325
Query: 321 LVEEGLRLFSSM--WDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWG 378
LV EG R FS M +D + P +HY CMVDLLGR+G L+EA + I+ M VE D G+WG
Sbjct: 326 LVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWG 385
Query: 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438
ALLGAC +H+++ L + A L+E P ++VLLSN+YA AG+W V K+R M +
Sbjct: 386 ALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLG 445
Query: 439 LKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498
KK+ ++ +E E KIH F+ GD +HPQS+ IY L + +K+ GY+PDT HDV+
Sbjct: 446 TKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVE 505
Query: 499 EEVKVGNLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVR 558
E K +L HSEKLAIAFGLI G IR+MKNLR C DCH+F K VS++T II+R
Sbjct: 506 MEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMR 565
Query: 559 DANRFHHFEGGACSCRDYW 577
D NRFHHF G CSC+++W
Sbjct: 566 DKNRFHHFRNGVCSCKEFW 584
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/581 (36%), Positives = 324/581 (55%), Gaps = 69/581 (11%)
Query: 63 FISSLLSCRNIFQIR---QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
ISSL SC ++ + Q+H + + G N+ V+N L+ +YA L + +F+ M
Sbjct: 418 LISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP 477
Query: 120 ERDSVSWSVMVGGFSK----VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175
E D VSW+ ++G ++ + + + CF + R G +L+ T V+ A
Sbjct: 478 EHDQVSWNSIIGALARSERSLPEAVVCFLNAQ---RAGQKLNRITFSSVLSAVSSLSFGE 534
Query: 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------------- 222
+G+ IH + LK+ + + AL+ Y KC +D ++F +M R
Sbjct: 535 LGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGY 594
Query: 223 ----------DLVTWTVMIGA--NKFLL------------------------------DV 240
DLV + + G + F+ DV
Sbjct: 595 IHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDV 654
Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM-LS 299
++G+A++DMY+KCG +D A F+ M +N SW++MI+ Y HGQG++AL LF M L
Sbjct: 655 VVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLD 714
Query: 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359
+ P+ +TFV +L ACSH GL+EEG + F SM D + + P ++H++CM D+LGRAG LD
Sbjct: 715 GQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELD 774
Query: 360 EALKLIESMSVEKDEGLWGALLGAC-RIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417
+ IE M ++ + +W +LGAC R + + +L + AA+ L + +P+N +YVLL N+
Sbjct: 775 KLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNM 834
Query: 418 YANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTL 477
YA GRW+D+ K R M +KK G++W+ +++ +H F GD +HP ++ IY+ L L
Sbjct: 835 YAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKEL 894
Query: 478 SEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGT-HIRIMKNLRV 536
+ K+ AGY+P T F L+D+++E K L HSEKLA+AF L A T IRIMKNLRV
Sbjct: 895 NRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRV 954
Query: 537 CGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
CGDCHS K++S I R II+RD+NRFHHF+ GACSC D+W
Sbjct: 955 CGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 160/375 (42%), Gaps = 73/375 (19%)
Query: 77 RQVHAQIVAGGTLTNLI-VANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSK 135
R+VH ++ G + ++ + N L+ +YA ++ DA +F M ++DSVSW+ M+ G +
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQ 392
Query: 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV 195
FI E ++ R + S+TL + +C K +G+ IH LK G+D++ V
Sbjct: 393 NGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSV 452
Query: 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233
AL+ +YA+ +++ R++F MP D V+W +IGA
Sbjct: 453 SNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAG 512
Query: 234 ---NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV----ISWSAMIAAYGYHGQ 286
N+ +L + + G ++I + N+ + +A+IA YG G+
Sbjct: 513 QKLNRITFSSVLSAVSSLSFGELG-----KQIHGLALKNNIADEATTENALIACYGKCGE 567
Query: 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL---------------FSS 331
+F M R + +T+ S++ H L+ + L L +++
Sbjct: 568 MDGCEKIFSRMAERR---DNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYAT 624
Query: 332 MWDDFA-------------------VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372
+ FA + DV + +VD+ + GRLD AL+ +M V +
Sbjct: 625 VLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPV-R 683
Query: 373 DEGLWGALLGACRIH 387
+ W +++ H
Sbjct: 684 NSYSWNSMISGYARH 698
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/440 (21%), Positives = 182/440 (41%), Gaps = 80/440 (18%)
Query: 60 PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119
P F+ S + R R H+++ ++ + N L+ Y A +F+ M
Sbjct: 6 PLSFVQSCVGHRG--AARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMP 63
Query: 120 ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD--RKDIVMG 177
R+ VSW+ +V G+S+ + R+ ++ G+ + Y V+RAC++ I+ G
Sbjct: 64 LRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFG 123
Query: 178 RLIHDIVLKSGLDIDQFVCAALVDMYAK---------CKVID------------------ 210
R IH ++ K +D V L+ MY K C D
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183
Query: 211 -----DARQLFDQM------PTR----DLVTWTV---------------MIGANKFLLDV 240
A ++F M PT LVT I + L D+
Sbjct: 184 AGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDL 243
Query: 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300
+G+ ++ +AK GS+ AR++F++M +N ++ + ++ G++A LF M ++S
Sbjct: 244 FVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLF-MDMNS 302
Query: 301 RVLPNRITFVSLLYACSHTGLVEE-GLR--------LFSSMWDDFAVRPDVKHYTCMVDL 351
+ + ++V LL + L EE GL+ + ++ DF V +V++
Sbjct: 303 MIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIG----NGLVNM 358
Query: 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK-SLLERQPQNPGH 410
+ G + +A ++ M+ +KD W +++ + +N E + + R PG
Sbjct: 359 YAKCGSIADARRVFYFMT-DKDSVSWNSMITG--LDQNGCFIEAVERYKSMRRHDILPGS 415
Query: 411 YVLLSNVYANAG-RWQDVAK 429
+ L+S++ + A +W + +
Sbjct: 416 FTLISSLSSCASLKWAKLGQ 435
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 213/597 (35%), Positives = 328/597 (54%), Gaps = 94/597 (15%)
Query: 71 RNIFQIRQVHAQIVAGGTLTNL---IVANKLLYIYALHKALTDAHALFNGMKERDSVSWS 127
+++ ++ Q+HA I+ L + ++ KL YA H + + ALF+ + D ++
Sbjct: 40 QSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFT 99
Query: 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187
+ S F + + + + + +T ++++C + G+LIH VLK
Sbjct: 100 AAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHTHVLKF 155
Query: 188 GLDIDQFVCAALVDMYAKC-------KVID------------------------DARQLF 216
GL ID +V LVD+YAK KV D AR LF
Sbjct: 156 GLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALF 215
Query: 217 DQMPTRDLVTWTVM------------------------------------------IGA- 233
D M RD+V+W VM IGA
Sbjct: 216 DSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGAL 275
Query: 234 ------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281
++ L+V + T +IDMY+KCGS++ A +F+ +K++++W+AMIA Y
Sbjct: 276 ETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGY 335
Query: 282 GYHGQGKKALDLFPMMLS-SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP 340
HG + AL LF M + + P ITF+ L AC+H GLV EG+R+F SM ++ ++P
Sbjct: 336 AMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395
Query: 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400
++HY C+V LLGRAG+L A + I++M+++ D LW ++LG+C++H + L + A+ L
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYL 455
Query: 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVG 460
+ +N G YVLLSN+YA+ G ++ VAK+R+LM + + K PG + IE+ENK+H+F G
Sbjct: 456 IGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAG 515
Query: 461 DSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLI 520
D H +S+EIY ML +SE+++ GY+P+TN L D++E K +L HSE+LAIA+GLI
Sbjct: 516 DREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLI 575
Query: 521 ATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
+T G+ ++I KNLRVC DCH+ K +S IT R I++RD NRFHHF G+CSC D+W
Sbjct: 576 STKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/540 (38%), Positives = 310/540 (57%), Gaps = 52/540 (9%)
Query: 60 PKFFISSLL--SCRNIFQI---RQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHAL 114
P F+ S L +C N+ I RQVH + + +V + L+ +YA L A A+
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162
Query: 115 FNGMKERDSVSWSVMVGGFSKVADFINCFETFR---------------EFIRCGMQLDSY 159
F+ ++ ++++SW+ MV G++K E FR F++ G L+++
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAF 222
Query: 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219
++ +R R+R DI +D V +++V A RQ+
Sbjct: 223 SVFTEMR--RERVDI----------------LDPLVLSSIVGACANLAASIAGRQVHG-- 262
Query: 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA 279
++ A F V + A+IDMYAKC + +A++IF RMR ++V+SW+++I
Sbjct: 263 ----------LVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIV 312
Query: 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339
HGQ +KAL L+ M+S V PN +TFV L+YACSH G VE+G LF SM D+ +R
Sbjct: 313 GMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIR 372
Query: 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399
P ++HYTC++DLLGR+G LDEA LI +M DE W ALL AC+ + A
Sbjct: 373 PSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADH 432
Query: 400 LLER-QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458
L+ + ++P Y+LLSN+YA+A W V++ R + ++K PG + +EV + F
Sbjct: 433 LVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFY 492
Query: 459 VGDSTHPQSEEIYRMLVTLSEKLEL-AGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAF 517
G+++HP E+I+R+L L E++ + GY+PDT++ LHD+DE+ K L+ HSE+ A+A+
Sbjct: 493 AGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAY 552
Query: 518 GLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
GL+ GT IRI+KNLRVCGDCH +KH+S IT R IIVRDA R+HHF+GG CSC D+W
Sbjct: 553 GLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/578 (35%), Positives = 314/578 (54%), Gaps = 63/578 (10%)
Query: 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD 122
+S ++S +RQ+HA ++ + N V + L AL D + +R
Sbjct: 14 LLSLIVSSTGKLHLRQIHALLLRTSLIRNSDVFHHFLSRLALSLIPRDINYSCRVFSQRL 73
Query: 123 SVSWS---VMVGGFSKVADFINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGR 178
+ + S M+ FS F FR R + + + F ++ C D++ G
Sbjct: 74 NPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGL 133
Query: 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NK 235
IH + G D + L+D+Y+ C+ DA ++FD++P RD V+W V+ NK
Sbjct: 134 QIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNK 193
Query: 236 FLLDVIL-----------------------------------GTAVID------------ 248
DV++ G V D
Sbjct: 194 RTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALN 253
Query: 249 -------MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301
MY++CGS+D A ++F MR++NV+SW+A+I+ +G GK+A++ F ML
Sbjct: 254 LSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFG 313
Query: 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD-DFAVRPDVKHYTCMVDLLGRAGRLDE 360
+ P T LL ACSH+GLV EG+ F M +F ++P++ HY C+VDLLGRA LD+
Sbjct: 314 ISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDK 373
Query: 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420
A LI+SM ++ D +W LLGACR+H +V+L E L+E + + G YVLL N Y+
Sbjct: 374 AYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYST 433
Query: 421 AGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEK 480
G+W+ V ++R LM +R+ PG + IE++ +H+F V D +HP+ EEIY+ML ++++
Sbjct: 434 VGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQ 493
Query: 481 LELAGYIPDTNFELHDVDEEVKVG-NLYSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGD 539
L++AGY+ + ELH+++ E + G L HSEKLAIAFG++ TP GT IR+ KNLR C D
Sbjct: 494 LKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVD 553
Query: 540 CHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577
CH+F K VS + R++IVRD +RFHHF+GG+CSC D+W
Sbjct: 554 CHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,982,262
Number of Sequences: 539616
Number of extensions: 8471432
Number of successful extensions: 29241
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 23938
Number of HSP's gapped (non-prelim): 1959
length of query: 577
length of database: 191,569,459
effective HSP length: 123
effective length of query: 454
effective length of database: 125,196,691
effective search space: 56839297714
effective search space used: 56839297714
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.3 bits)