Query 037414
Match_columns 577
No_of_seqs 684 out of 4412
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 11:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-112 3E-117 926.3 56.6 555 19-577 86-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1E-109 3E-114 923.4 55.7 551 18-575 251-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 6E-68 1.3E-72 590.0 34.3 536 18-572 49-679 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.4E-59 5.3E-64 512.0 39.3 514 18-556 368-912 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-57 4.9E-62 496.6 41.3 400 22-443 408-847 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.7E-53 5.8E-58 461.8 36.8 482 58-572 85-583 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 4.9E-30 1.1E-34 207.1 6.7 106 444-567 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.7E-23 3.6E-28 237.3 39.4 395 21-439 466-868 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-22 4.6E-27 228.3 39.4 412 19-439 362-801 (899)
10 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.9E-24 184.9 32.0 296 131-445 43-355 (389)
11 PRK11788 tetratricopeptide rep 99.9 1.6E-19 3.4E-24 184.4 28.0 293 100-404 43-348 (389)
12 KOG4626 O-linked N-acetylgluco 99.8 3E-19 6.6E-24 174.7 21.4 390 11-426 107-508 (966)
13 KOG4626 O-linked N-acetylgluco 99.8 2E-18 4.3E-23 169.1 23.0 405 23-439 51-487 (966)
14 TIGR00990 3a0801s09 mitochondr 99.8 4.2E-16 9.1E-21 167.9 39.4 347 73-437 143-571 (615)
15 PRK10049 pgaA outer membrane p 99.8 4.4E-15 9.6E-20 163.0 45.5 370 63-438 21-457 (765)
16 PRK15174 Vi polysaccharide exp 99.8 3E-16 6.5E-21 168.6 35.1 325 63-408 48-386 (656)
17 PRK11447 cellulose synthase su 99.8 2.9E-16 6.3E-21 180.1 36.2 355 69-438 281-701 (1157)
18 PRK11447 cellulose synthase su 99.8 5.6E-16 1.2E-20 177.8 37.3 382 28-439 277-743 (1157)
19 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.7E-20 163.9 37.3 321 97-438 47-382 (656)
20 PRK09782 bacteriophage N4 rece 99.8 2.5E-15 5.5E-20 165.2 38.0 398 20-438 78-707 (987)
21 PRK14574 hmsH outer membrane p 99.7 1.5E-14 3.3E-19 156.0 39.0 413 19-438 33-514 (822)
22 TIGR00990 3a0801s09 mitochondr 99.7 4.5E-15 9.7E-20 159.9 33.7 360 23-408 130-576 (615)
23 PRK10049 pgaA outer membrane p 99.7 2.3E-13 4.9E-18 149.6 38.5 332 89-438 12-423 (765)
24 PRK14574 hmsH outer membrane p 99.7 1.7E-12 3.6E-17 140.3 40.3 358 62-437 37-479 (822)
25 PRK09782 bacteriophage N4 rece 99.6 6E-12 1.3E-16 138.9 34.7 344 73-439 358-742 (987)
26 KOG4422 Uncharacterized conser 99.6 5.3E-12 1.1E-16 119.5 28.8 332 61-404 208-591 (625)
27 KOG2076 RNA polymerase III tra 99.6 4.8E-12 1E-16 130.5 30.5 330 104-447 151-522 (895)
28 KOG2002 TPR-containing nuclear 99.6 6.1E-12 1.3E-16 130.6 30.0 368 73-450 252-686 (1018)
29 PF13429 TPR_15: Tetratricopep 99.6 2.9E-14 6.3E-19 138.1 12.3 256 163-435 13-275 (280)
30 KOG4422 Uncharacterized conser 99.5 4.5E-10 9.8E-15 106.6 36.4 372 62-439 118-592 (625)
31 PRK10747 putative protoheme IX 99.5 5.2E-11 1.1E-15 120.9 31.0 285 105-403 97-390 (398)
32 PRK10747 putative protoheme IX 99.5 3.7E-11 8.1E-16 121.9 29.1 277 136-435 97-388 (398)
33 TIGR00540 hemY_coli hemY prote 99.4 1.3E-10 2.9E-15 118.5 29.8 286 104-402 96-398 (409)
34 PF13429 TPR_15: Tetratricopep 99.4 9E-13 2E-17 127.7 11.0 254 129-402 14-276 (280)
35 KOG1126 DNA-binding cell divis 99.4 2E-11 4.4E-16 122.3 20.6 259 174-438 335-621 (638)
36 COG2956 Predicted N-acetylgluc 99.4 4.1E-10 9E-15 103.4 27.1 305 136-457 48-367 (389)
37 TIGR00540 hemY_coli hemY prote 99.4 2.8E-10 6.1E-15 116.2 28.7 283 134-435 95-397 (409)
38 KOG2003 TPR repeat-containing 99.4 1.8E-10 3.8E-15 109.9 24.4 276 131-423 427-709 (840)
39 KOG0495 HAT repeat protein [RN 99.4 5.7E-09 1.2E-13 104.3 35.8 379 58-448 377-791 (913)
40 KOG1155 Anaphase-promoting com 99.4 6.9E-10 1.5E-14 106.6 27.9 257 164-436 233-494 (559)
41 KOG1126 DNA-binding cell divis 99.4 8.6E-11 1.9E-15 117.8 21.8 280 107-408 334-625 (638)
42 KOG0547 Translocase of outer m 99.4 3.7E-10 8E-15 109.1 24.7 189 242-435 362-564 (606)
43 KOG2002 TPR-containing nuclear 99.3 5.7E-10 1.2E-14 116.3 26.5 407 28-452 172-608 (1018)
44 KOG0495 HAT repeat protein [RN 99.3 1E-08 2.2E-13 102.5 33.9 365 62-450 518-891 (913)
45 TIGR02521 type_IV_pilW type IV 99.3 5.1E-10 1.1E-14 105.0 23.5 197 239-436 30-231 (234)
46 KOG1155 Anaphase-promoting com 99.3 3.8E-08 8.2E-13 94.9 34.5 283 132-435 236-534 (559)
47 COG3071 HemY Uncharacterized e 99.3 6.9E-09 1.5E-13 98.4 28.9 287 105-403 97-390 (400)
48 PF13041 PPR_2: PPR repeat fam 99.3 6.4E-12 1.4E-16 85.9 6.5 50 269-318 1-50 (50)
49 KOG4318 Bicoid mRNA stability 99.3 8.9E-11 1.9E-15 120.7 16.8 270 180-501 12-282 (1088)
50 KOG2003 TPR repeat-containing 99.3 6.5E-10 1.4E-14 106.1 21.3 233 202-437 428-689 (840)
51 PF13041 PPR_2: PPR repeat fam 99.3 7.6E-12 1.6E-16 85.6 5.9 50 121-170 1-50 (50)
52 KOG1840 Kinesin light chain [C 99.2 8.4E-09 1.8E-13 104.7 27.6 247 158-435 199-477 (508)
53 COG2956 Predicted N-acetylgluc 99.2 8E-09 1.7E-13 95.1 23.7 283 105-402 48-346 (389)
54 KOG4318 Bicoid mRNA stability 99.2 3.5E-09 7.6E-14 109.2 23.6 246 78-354 11-283 (1088)
55 KOG2076 RNA polymerase III tra 99.2 1.1E-07 2.3E-12 99.0 33.5 361 64-438 146-556 (895)
56 PRK12370 invasion protein regu 99.2 4.5E-09 9.9E-14 111.5 24.5 258 157-438 255-536 (553)
57 COG3071 HemY Uncharacterized e 99.2 1.9E-08 4.2E-13 95.4 25.4 277 136-435 97-388 (400)
58 KOG1915 Cell cycle control pro 99.2 1.1E-07 2.5E-12 91.8 30.7 357 73-437 89-500 (677)
59 TIGR02521 type_IV_pilW type IV 99.2 9.8E-09 2.1E-13 96.2 22.3 196 123-332 31-229 (234)
60 KOG1915 Cell cycle control pro 99.1 9.9E-08 2.1E-12 92.2 28.1 368 73-450 123-546 (677)
61 KOG1173 Anaphase-promoting com 99.1 2E-08 4.3E-13 99.1 22.3 250 168-435 254-516 (611)
62 PRK12370 invasion protein regu 99.1 2.2E-08 4.8E-13 106.2 24.0 258 122-404 255-536 (553)
63 KOG1129 TPR repeat-containing 99.0 1.8E-08 4E-13 92.7 18.1 230 192-438 222-459 (478)
64 KOG1840 Kinesin light chain [C 99.0 1.1E-07 2.4E-12 96.7 23.5 237 126-402 202-478 (508)
65 KOG1174 Anaphase-promoting com 99.0 1.7E-06 3.6E-11 82.6 27.9 268 122-409 231-506 (564)
66 PRK11189 lipoprotein NlpI; Pro 98.9 8.9E-08 1.9E-12 93.1 19.9 191 240-439 64-267 (296)
67 KOG1174 Anaphase-promoting com 98.9 9.8E-06 2.1E-10 77.5 32.3 325 93-434 98-464 (564)
68 KOG1129 TPR repeat-containing 98.9 6.2E-08 1.3E-12 89.3 16.9 228 162-406 227-461 (478)
69 KOG1173 Anaphase-promoting com 98.9 8.8E-07 1.9E-11 87.8 25.1 278 122-415 243-530 (611)
70 PRK11189 lipoprotein NlpI; Pro 98.9 3.9E-07 8.4E-12 88.7 22.8 227 172-418 40-281 (296)
71 KOG0547 Translocase of outer m 98.9 8E-07 1.7E-11 86.5 23.0 216 169-403 337-566 (606)
72 KOG4162 Predicted calmodulin-b 98.9 8.7E-06 1.9E-10 83.8 30.9 338 84-437 315-783 (799)
73 COG3063 PilF Tfp pilus assembl 98.8 4E-07 8.7E-12 80.4 17.8 162 274-439 38-204 (250)
74 KOG2047 mRNA splicing factor [ 98.8 9.5E-06 2.1E-10 81.7 29.4 269 161-436 390-686 (835)
75 cd05804 StaR_like StaR_like; a 98.8 2.4E-05 5.1E-10 78.8 32.5 300 125-438 8-337 (355)
76 PF12569 NARP1: NMDA receptor- 98.8 2.1E-06 4.7E-11 88.4 24.6 148 289-439 129-293 (517)
77 KOG2047 mRNA splicing factor [ 98.8 7.3E-05 1.6E-09 75.6 33.6 337 92-435 169-613 (835)
78 PF04733 Coatomer_E: Coatomer 98.8 4.3E-07 9.4E-12 87.1 17.9 79 357-435 182-263 (290)
79 PF04733 Coatomer_E: Coatomer 98.8 3.8E-07 8.3E-12 87.5 17.3 253 133-408 11-270 (290)
80 PF12569 NARP1: NMDA receptor- 98.8 5.4E-06 1.2E-10 85.5 26.7 124 310-436 198-333 (517)
81 KOG1125 TPR repeat-containing 98.8 2.3E-07 5E-12 92.2 15.8 220 202-436 294-526 (579)
82 KOG2376 Signal recognition par 98.7 3.7E-05 8E-10 77.0 29.9 392 25-434 17-517 (652)
83 COG3063 PilF Tfp pilus assembl 98.7 2.9E-06 6.4E-11 75.0 19.6 194 242-436 37-235 (250)
84 KOG1156 N-terminal acetyltrans 98.7 4.9E-05 1.1E-09 77.0 29.8 301 122-439 142-470 (700)
85 cd05804 StaR_like StaR_like; a 98.7 2.9E-05 6.2E-10 78.2 28.8 295 92-403 6-336 (355)
86 KOG4340 Uncharacterized conser 98.7 1.2E-05 2.5E-10 73.7 22.5 301 95-434 13-336 (459)
87 KOG0624 dsRNA-activated protei 98.7 7.6E-05 1.7E-09 69.9 27.9 200 91-307 37-257 (504)
88 PF12854 PPR_1: PPR repeat 98.6 5.5E-08 1.2E-12 59.7 4.4 34 187-220 1-34 (34)
89 PF12854 PPR_1: PPR repeat 98.6 5.4E-08 1.2E-12 59.7 4.1 34 86-119 1-34 (34)
90 KOG3785 Uncharacterized conser 98.6 3.1E-05 6.7E-10 72.7 23.4 353 73-439 73-492 (557)
91 PRK04841 transcriptional regul 98.6 0.00012 2.6E-09 83.5 33.4 330 102-438 384-761 (903)
92 KOG0548 Molecular co-chaperone 98.6 4.2E-05 9E-10 75.9 25.0 362 73-438 18-456 (539)
93 KOG1070 rRNA processing protei 98.6 4.6E-06 1E-10 90.7 19.8 199 239-441 1457-1667(1710)
94 KOG1128 Uncharacterized conser 98.5 3.9E-06 8.4E-11 85.8 16.8 222 188-439 393-618 (777)
95 KOG4162 Predicted calmodulin-b 98.5 2.3E-05 4.9E-10 80.9 22.2 132 273-408 652-788 (799)
96 KOG1156 N-terminal acetyltrans 98.5 0.00056 1.2E-08 69.6 31.3 358 62-439 10-436 (700)
97 TIGR03302 OM_YfiO outer membra 98.5 1.6E-05 3.4E-10 74.8 19.4 182 238-437 31-232 (235)
98 PRK04841 transcriptional regul 98.4 0.00048 1E-08 78.7 33.7 326 102-437 351-720 (903)
99 KOG0985 Vesicle coat protein c 98.4 0.00038 8.2E-09 74.0 28.2 309 76-431 966-1335(1666)
100 KOG0985 Vesicle coat protein c 98.4 0.00029 6.2E-09 74.8 26.5 310 65-432 928-1244(1666)
101 PRK10370 formate-dependent nit 98.4 3.8E-05 8.2E-10 69.6 18.0 118 319-438 52-174 (198)
102 KOG3616 Selective LIM binding 98.4 0.00011 2.4E-09 75.2 22.6 166 247-433 739-933 (1636)
103 KOG3617 WD40 and TPR repeat-co 98.4 0.00011 2.5E-09 76.1 22.5 286 90-431 724-1058(1416)
104 KOG4340 Uncharacterized conser 98.4 8.2E-05 1.8E-09 68.3 19.1 394 23-436 13-442 (459)
105 KOG1070 rRNA processing protei 98.3 7.9E-05 1.7E-09 81.6 22.0 218 89-321 1455-1686(1710)
106 TIGR03302 OM_YfiO outer membra 98.3 5.1E-05 1.1E-09 71.4 18.8 144 241-405 71-234 (235)
107 PRK15179 Vi polysaccharide bio 98.3 4.5E-05 9.8E-10 81.8 20.2 131 271-406 86-220 (694)
108 KOG3616 Selective LIM binding 98.3 0.00032 6.9E-09 72.0 24.5 289 100-438 714-1025(1636)
109 PRK15359 type III secretion sy 98.3 1.3E-05 2.9E-10 68.6 12.3 90 347-436 29-120 (144)
110 PRK14720 transcript cleavage f 98.3 0.00013 2.8E-09 79.2 22.0 147 242-419 118-268 (906)
111 PLN02789 farnesyltranstransfer 98.3 0.0002 4.3E-09 69.8 21.4 217 203-435 47-300 (320)
112 COG4783 Putative Zn-dependent 98.3 0.001 2.3E-08 65.7 25.9 116 317-434 317-434 (484)
113 PRK15359 type III secretion sy 98.2 5.7E-05 1.2E-09 64.7 15.3 121 292-419 14-137 (144)
114 PRK10370 formate-dependent nit 98.2 0.00015 3.2E-09 65.8 18.3 156 245-412 21-182 (198)
115 KOG1128 Uncharacterized conser 98.2 6.2E-05 1.3E-09 77.3 17.3 234 89-350 395-631 (777)
116 TIGR00756 PPR pentatricopeptid 98.2 2E-06 4.4E-11 53.5 4.5 35 124-158 1-35 (35)
117 KOG2376 Signal recognition par 98.2 0.009 1.9E-07 60.5 33.0 329 73-432 28-400 (652)
118 KOG1125 TPR repeat-containing 98.2 6.8E-05 1.5E-09 75.1 16.6 86 132-219 294-379 (579)
119 PRK15363 pathogenicity island 98.2 5E-05 1.1E-09 64.2 13.2 95 342-436 35-131 (157)
120 TIGR00756 PPR pentatricopeptid 98.2 3.2E-06 7E-11 52.5 4.3 34 272-305 1-34 (35)
121 COG4783 Putative Zn-dependent 98.2 0.00031 6.7E-09 69.3 19.6 144 273-438 308-455 (484)
122 COG5010 TadD Flp pilus assembl 98.1 0.0004 8.6E-09 63.2 18.8 154 275-431 70-225 (257)
123 KOG3785 Uncharacterized conser 98.1 0.002 4.3E-08 60.9 23.0 176 99-297 29-211 (557)
124 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00014 3E-09 72.3 16.1 127 93-221 170-296 (395)
125 PF13812 PPR_3: Pentatricopept 98.1 6.5E-06 1.4E-10 50.8 4.3 34 123-156 1-34 (34)
126 KOG1127 TPR repeat-containing 98.1 0.0011 2.4E-08 70.6 22.7 132 92-226 492-629 (1238)
127 COG5010 TadD Flp pilus assembl 98.1 0.00043 9.2E-09 63.0 17.1 134 303-438 63-198 (257)
128 KOG0624 dsRNA-activated protei 98.0 0.012 2.6E-07 55.6 27.7 302 90-438 67-395 (504)
129 KOG1914 mRNA cleavage and poly 98.0 0.019 4.1E-07 57.7 31.6 375 56-434 16-536 (656)
130 PLN02789 farnesyltranstransfer 98.0 0.002 4.3E-08 62.9 22.7 31 270-300 141-171 (320)
131 KOG1127 TPR repeat-containing 98.0 0.0017 3.8E-08 69.2 23.1 126 307-435 851-994 (1238)
132 TIGR02552 LcrH_SycD type III s 98.0 0.00011 2.3E-09 62.3 12.3 101 338-438 12-115 (135)
133 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 50.1 4.2 33 272-304 2-34 (34)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.7E-09 71.0 15.7 129 240-372 169-298 (395)
135 KOG3617 WD40 and TPR repeat-co 98.0 0.00068 1.5E-08 70.6 19.4 242 120-401 723-994 (1416)
136 KOG0548 Molecular co-chaperone 98.0 0.015 3.3E-07 58.3 27.7 370 29-420 11-472 (539)
137 KOG3081 Vesicle coat complex C 98.0 0.0056 1.2E-07 55.9 22.1 84 250-334 147-235 (299)
138 PRK15179 Vi polysaccharide bio 98.0 0.0011 2.3E-08 71.5 21.0 140 238-381 84-229 (694)
139 KOG3081 Vesicle coat complex C 97.9 0.0043 9.4E-08 56.6 21.1 114 318-435 149-269 (299)
140 PRK14720 transcript cleavage f 97.9 0.0027 5.9E-08 69.2 23.3 235 89-385 28-268 (906)
141 PF01535 PPR: PPR repeat; Int 97.8 2.6E-05 5.7E-10 46.8 3.6 31 124-154 1-31 (31)
142 KOG3060 Uncharacterized conser 97.8 0.0025 5.4E-08 57.7 17.0 168 242-412 54-229 (289)
143 TIGR02552 LcrH_SycD type III s 97.8 0.00097 2.1E-08 56.4 14.3 113 293-409 5-120 (135)
144 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.6E-10 46.5 3.3 31 272-302 1-31 (31)
145 cd00189 TPR Tetratricopeptide 97.7 0.0004 8.7E-09 53.9 10.4 92 345-436 3-96 (100)
146 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00094 2E-08 54.9 12.7 102 309-410 5-112 (119)
147 PF09976 TPR_21: Tetratricopep 97.7 0.0017 3.7E-08 55.8 14.2 113 319-432 24-142 (145)
148 KOG3060 Uncharacterized conser 97.7 0.0034 7.5E-08 56.8 15.9 182 253-438 25-221 (289)
149 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00078 1.7E-08 55.4 11.4 97 343-439 3-107 (119)
150 PF09976 TPR_21: Tetratricopep 97.6 0.0024 5.3E-08 54.8 14.4 85 279-366 56-142 (145)
151 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.053 1.1E-06 53.3 24.2 128 307-436 398-530 (660)
152 PF12895 Apc3: Anaphase-promot 97.6 9.2E-05 2E-09 56.8 4.6 78 355-433 2-83 (84)
153 PF13414 TPR_11: TPR repeat; P 97.5 0.00034 7.5E-09 51.2 6.5 64 373-436 2-66 (69)
154 PF05843 Suf: Suppressor of fo 97.5 0.0051 1.1E-07 59.2 15.9 134 272-408 2-141 (280)
155 PF10037 MRP-S27: Mitochondria 97.4 0.0015 3.3E-08 65.4 11.8 121 86-206 60-186 (429)
156 PF13432 TPR_16: Tetratricopep 97.4 0.00045 9.9E-09 49.9 6.0 58 380-437 3-60 (65)
157 KOG2053 Mitochondrial inherita 97.4 0.28 6.1E-06 52.6 30.7 387 30-441 53-506 (932)
158 KOG2053 Mitochondrial inherita 97.4 0.18 3.8E-06 54.1 26.5 217 133-368 19-252 (932)
159 PF06239 ECSIT: Evolutionarily 97.4 0.0016 3.4E-08 57.9 10.0 97 260-357 34-153 (228)
160 PLN03088 SGT1, suppressor of 97.4 0.0014 3E-08 65.5 10.9 104 313-418 9-114 (356)
161 PRK02603 photosystem I assembl 97.4 0.0029 6.3E-08 56.1 11.8 95 342-436 35-148 (172)
162 PF08579 RPM2: Mitochondrial r 97.3 0.0033 7.1E-08 49.5 10.1 80 126-205 28-116 (120)
163 PF08579 RPM2: Mitochondrial r 97.3 0.0029 6.3E-08 49.8 9.7 81 273-354 27-116 (120)
164 CHL00033 ycf3 photosystem I as 97.3 0.0025 5.5E-08 56.2 10.9 94 341-434 34-139 (168)
165 cd00189 TPR Tetratricopeptide 97.3 0.0042 9.2E-08 47.9 10.6 57 275-332 4-60 (100)
166 KOG1914 mRNA cleavage and poly 97.3 0.026 5.7E-07 56.7 17.8 124 242-368 368-498 (656)
167 PF14938 SNAP: Soluble NSF att 97.3 0.015 3.2E-07 56.2 16.3 142 277-433 100-262 (282)
168 PF13432 TPR_16: Tetratricopep 97.2 0.0016 3.4E-08 47.0 7.3 61 348-408 3-65 (65)
169 PRK02603 photosystem I assembl 97.2 0.009 2E-07 52.9 13.5 130 270-423 34-166 (172)
170 PF14938 SNAP: Soluble NSF att 97.2 0.023 5E-07 54.9 17.4 214 107-375 30-269 (282)
171 PRK10153 DNA-binding transcrip 97.2 0.013 2.8E-07 61.2 16.5 65 373-438 419-483 (517)
172 PF14559 TPR_19: Tetratricopep 97.2 0.00053 1.2E-08 50.0 4.6 53 385-437 2-54 (68)
173 PLN03088 SGT1, suppressor of 97.2 0.0067 1.4E-07 60.6 13.4 101 277-381 8-110 (356)
174 PF05843 Suf: Suppressor of fo 97.2 0.0036 7.8E-08 60.2 10.8 130 307-437 2-136 (280)
175 KOG2041 WD40 repeat protein [G 97.1 0.28 6E-06 51.1 23.4 90 189-299 848-951 (1189)
176 PF12895 Apc3: Anaphase-promot 97.1 0.0018 3.8E-08 49.6 6.4 80 284-367 2-83 (84)
177 PF10037 MRP-S27: Mitochondria 97.1 0.0058 1.3E-07 61.3 11.5 116 239-355 65-186 (429)
178 PF06239 ECSIT: Evolutionarily 97.1 0.0046 1E-07 55.0 9.4 72 138-209 67-154 (228)
179 PF13371 TPR_9: Tetratricopept 97.0 0.0024 5.1E-08 47.3 6.6 57 382-438 3-59 (73)
180 PRK10153 DNA-binding transcrip 97.0 0.017 3.7E-07 60.4 14.9 139 269-409 335-488 (517)
181 COG4235 Cytochrome c biogenesi 97.0 0.0068 1.5E-07 56.8 10.6 101 339-439 153-258 (287)
182 KOG0553 TPR repeat-containing 97.0 0.0029 6.3E-08 58.9 8.0 97 315-414 90-189 (304)
183 KOG2041 WD40 repeat protein [G 97.0 0.067 1.4E-06 55.4 18.1 240 155-438 689-953 (1189)
184 PRK10866 outer membrane biogen 97.0 0.065 1.4E-06 50.3 17.2 173 246-435 38-239 (243)
185 KOG0553 TPR repeat-containing 97.0 0.0076 1.6E-07 56.2 10.5 100 278-381 88-189 (304)
186 KOG0550 Molecular chaperone (D 97.0 0.027 5.7E-07 54.8 14.3 152 280-437 178-350 (486)
187 PRK10866 outer membrane biogen 96.9 0.11 2.3E-06 48.9 18.2 61 126-188 35-99 (243)
188 KOG1538 Uncharacterized conser 96.9 0.071 1.5E-06 54.7 17.1 85 307-401 748-844 (1081)
189 PRK15331 chaperone protein Sic 96.9 0.0072 1.6E-07 51.6 8.8 86 351-436 46-133 (165)
190 PRK15363 pathogenicity island 96.9 0.029 6.3E-07 47.7 12.2 98 242-340 37-137 (157)
191 PF04840 Vps16_C: Vps16, C-ter 96.9 0.52 1.1E-05 46.0 27.8 112 307-435 178-289 (319)
192 COG3898 Uncharacterized membra 96.8 0.38 8.3E-06 46.7 20.7 288 95-403 85-392 (531)
193 PF14559 TPR_19: Tetratricopep 96.8 0.0023 4.9E-08 46.6 4.8 58 318-377 3-61 (68)
194 COG4700 Uncharacterized protei 96.8 0.04 8.8E-07 47.6 12.4 123 303-428 86-213 (251)
195 KOG2796 Uncharacterized conser 96.8 0.051 1.1E-06 49.6 13.5 132 162-300 181-315 (366)
196 PRK10803 tol-pal system protei 96.7 0.014 3E-07 55.2 10.7 93 344-436 145-245 (263)
197 KOG1538 Uncharacterized conser 96.7 0.27 5.8E-06 50.7 19.8 101 256-368 732-843 (1081)
198 CHL00033 ycf3 photosystem I as 96.7 0.034 7.4E-07 49.0 12.5 62 272-333 36-99 (168)
199 PF13414 TPR_11: TPR repeat; P 96.7 0.0058 1.3E-07 44.6 6.2 65 341-405 2-69 (69)
200 KOG2796 Uncharacterized conser 96.7 0.078 1.7E-06 48.5 14.2 226 93-349 70-326 (366)
201 PF12688 TPR_5: Tetratrico pep 96.7 0.049 1.1E-06 44.5 12.0 92 277-368 7-101 (120)
202 PF12688 TPR_5: Tetratrico pep 96.6 0.03 6.5E-07 45.8 10.6 81 352-432 11-99 (120)
203 PF13431 TPR_17: Tetratricopep 96.6 0.0016 3.6E-08 39.7 2.3 33 397-429 2-34 (34)
204 COG4700 Uncharacterized protei 96.6 0.4 8.6E-06 41.7 17.2 99 338-436 85-188 (251)
205 PF13281 DUF4071: Domain of un 96.6 0.16 3.4E-06 50.2 16.9 159 245-406 146-337 (374)
206 KOG2280 Vacuolar assembly/sort 96.6 0.93 2E-05 47.9 22.8 117 301-433 679-795 (829)
207 PF04840 Vps16_C: Vps16, C-ter 96.6 0.86 1.9E-05 44.5 27.4 85 344-434 179-263 (319)
208 PF09205 DUF1955: Domain of un 96.4 0.13 2.9E-06 41.8 12.6 139 283-440 14-152 (161)
209 PF07079 DUF1347: Protein of u 96.3 1.4 2.9E-05 44.0 28.5 72 363-435 445-522 (549)
210 PF13371 TPR_9: Tetratricopept 96.3 0.018 4E-07 42.4 6.9 62 350-411 3-66 (73)
211 PF13428 TPR_14: Tetratricopep 96.3 0.011 2.3E-07 38.7 4.8 42 375-416 2-43 (44)
212 COG3898 Uncharacterized membra 96.3 1.2 2.7E-05 43.4 27.2 285 125-436 84-391 (531)
213 KOG1130 Predicted G-alpha GTPa 96.3 0.041 9E-07 53.4 10.5 128 308-435 197-342 (639)
214 KOG0550 Molecular chaperone (D 96.2 0.33 7.2E-06 47.5 16.3 154 247-406 176-353 (486)
215 PF12921 ATP13: Mitochondrial 96.2 0.063 1.4E-06 44.4 10.2 96 240-351 2-97 (126)
216 PRK10803 tol-pal system protei 96.2 0.12 2.6E-06 49.0 13.4 102 308-409 145-252 (263)
217 PF13525 YfiO: Outer membrane 96.1 0.41 8.8E-06 43.6 15.8 167 246-429 11-199 (203)
218 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.031 6.7E-07 55.8 8.9 96 341-439 74-176 (453)
219 KOG3941 Intermediate in Toll s 96.0 0.05 1.1E-06 50.2 9.3 109 259-368 53-185 (406)
220 PF03704 BTAD: Bacterial trans 95.9 0.04 8.6E-07 47.2 8.2 61 376-436 64-124 (146)
221 PF12921 ATP13: Mitochondrial 95.9 0.088 1.9E-06 43.5 9.7 62 306-367 2-77 (126)
222 PF13525 YfiO: Outer membrane 95.8 0.59 1.3E-05 42.6 15.5 57 131-187 13-71 (203)
223 KOG0543 FKBP-type peptidyl-pro 95.6 0.12 2.6E-06 50.6 10.5 64 374-437 257-320 (397)
224 COG0457 NrfG FOG: TPR repeat [ 95.5 1.9 4E-05 39.3 22.6 197 240-438 59-266 (291)
225 PF13424 TPR_12: Tetratricopep 95.5 0.028 6E-07 42.1 4.9 57 241-297 6-72 (78)
226 PF13281 DUF4071: Domain of un 95.5 0.83 1.8E-05 45.2 16.2 71 98-168 147-227 (374)
227 PF13424 TPR_12: Tetratricopep 95.4 0.031 6.8E-07 41.8 4.9 60 376-435 7-73 (78)
228 PF03704 BTAD: Bacterial trans 95.3 0.33 7.1E-06 41.5 11.6 53 279-332 70-122 (146)
229 KOG1130 Predicted G-alpha GTPa 95.3 0.1 2.2E-06 50.8 8.7 259 132-403 26-344 (639)
230 KOG3941 Intermediate in Toll s 95.1 0.16 3.6E-06 46.9 9.1 113 109-221 51-187 (406)
231 COG4235 Cytochrome c biogenesi 95.1 0.42 9.1E-06 45.1 12.0 30 270-299 155-184 (287)
232 PF04053 Coatomer_WDAD: Coatom 94.9 0.63 1.4E-05 47.7 13.8 156 169-369 272-429 (443)
233 COG5107 RNA14 Pre-mRNA 3'-end 94.7 1.6 3.5E-05 43.4 15.2 126 194-332 398-528 (660)
234 COG4105 ComL DNA uptake lipopr 94.5 3.9 8.5E-05 37.9 20.7 58 380-437 173-233 (254)
235 KOG2610 Uncharacterized conser 94.4 1.1 2.3E-05 42.9 12.9 112 253-368 116-235 (491)
236 COG1729 Uncharacterized protei 94.3 0.59 1.3E-05 43.5 11.0 57 380-436 184-243 (262)
237 smart00299 CLH Clathrin heavy 94.3 2.8 6.2E-05 35.3 15.8 125 275-419 11-136 (140)
238 KOG4555 TPR repeat-containing 94.2 0.49 1.1E-05 38.5 8.8 89 351-439 52-146 (175)
239 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.36 7.9E-06 48.4 9.8 62 304-368 73-138 (453)
240 PF13512 TPR_18: Tetratricopep 94.0 1.6 3.4E-05 36.6 11.9 56 353-408 21-81 (142)
241 PF04184 ST7: ST7 protein; In 94.0 3.1 6.8E-05 42.2 15.9 99 310-408 263-380 (539)
242 KOG0543 FKBP-type peptidyl-pro 94.0 0.73 1.6E-05 45.3 11.3 138 278-437 215-355 (397)
243 PF04053 Coatomer_WDAD: Coatom 94.0 0.98 2.1E-05 46.3 13.0 29 192-220 346-374 (443)
244 KOG1258 mRNA processing protei 93.8 9.6 0.00021 39.7 29.4 357 57-423 42-490 (577)
245 PF09205 DUF1955: Domain of un 93.8 3.3 7.1E-05 34.0 13.1 138 169-338 13-151 (161)
246 COG4105 ComL DNA uptake lipopr 93.7 4.9 0.00011 37.3 15.4 55 277-332 173-230 (254)
247 KOG2280 Vacuolar assembly/sort 93.6 12 0.00026 40.0 23.3 100 249-364 693-792 (829)
248 PRK11906 transcriptional regul 93.6 1.6 3.4E-05 44.1 13.0 77 359-435 321-399 (458)
249 COG3118 Thioredoxin domain-con 93.5 6.9 0.00015 37.1 17.2 142 278-422 141-286 (304)
250 KOG1920 IkappaB kinase complex 93.5 16 0.00035 41.2 22.7 32 154-186 787-820 (1265)
251 PF13512 TPR_18: Tetratricopep 93.4 3.6 7.8E-05 34.6 12.9 112 280-408 19-133 (142)
252 KOG1941 Acetylcholine receptor 93.2 2.2 4.7E-05 41.3 12.7 191 242-432 45-270 (518)
253 smart00299 CLH Clathrin heavy 93.1 4.7 0.0001 34.0 15.0 42 128-170 12-53 (140)
254 PF07035 Mic1: Colon cancer-as 92.9 5.8 0.00013 34.5 14.5 32 144-175 15-46 (167)
255 PF10300 DUF3808: Protein of u 92.8 7.2 0.00016 40.6 17.3 161 273-436 190-375 (468)
256 COG3118 Thioredoxin domain-con 92.5 9.9 0.00022 36.0 16.5 51 169-220 145-195 (304)
257 PF13170 DUF4003: Protein of u 92.3 2.3 4.9E-05 41.2 11.9 142 57-200 57-224 (297)
258 PRK11906 transcriptional regul 92.1 8.8 0.00019 38.9 15.9 156 272-431 252-430 (458)
259 PF00515 TPR_1: Tetratricopept 92.0 0.36 7.8E-06 29.1 4.1 32 375-406 2-33 (34)
260 KOG4555 TPR repeat-containing 92.0 3.3 7.1E-05 33.9 10.4 53 281-334 53-105 (175)
261 PF07719 TPR_2: Tetratricopept 91.9 0.51 1.1E-05 28.3 4.8 32 376-407 3-34 (34)
262 KOG1585 Protein required for f 91.9 10 0.00022 34.9 16.8 85 346-431 154-250 (308)
263 PF08631 SPO22: Meiosis protei 91.8 13 0.00027 35.8 21.8 17 384-400 256-272 (278)
264 PF10300 DUF3808: Protein of u 91.7 14 0.00031 38.5 18.0 172 142-333 176-374 (468)
265 PF09613 HrpB1_HrpK: Bacterial 91.7 7.3 0.00016 33.4 12.9 90 314-406 18-109 (160)
266 COG1729 Uncharacterized protei 91.7 4.1 8.8E-05 38.1 12.3 102 308-410 144-251 (262)
267 KOG2114 Vacuolar assembly/sort 91.4 10 0.00022 41.1 16.2 175 244-434 338-516 (933)
268 KOG1920 IkappaB kinase complex 91.4 30 0.00065 39.3 22.5 110 248-368 916-1025(1265)
269 PRK15331 chaperone protein Sic 91.1 1.1 2.4E-05 38.5 7.4 82 104-186 49-133 (165)
270 PF04184 ST7: ST7 protein; In 91.1 12 0.00026 38.2 15.5 63 377-439 262-326 (539)
271 COG3629 DnrI DNA-binding trans 90.9 1.3 2.7E-05 42.0 8.3 61 376-436 155-215 (280)
272 KOG2610 Uncharacterized conser 90.6 6.9 0.00015 37.6 12.7 148 134-296 114-272 (491)
273 COG4649 Uncharacterized protei 90.5 3.8 8.3E-05 35.4 9.9 120 103-222 69-196 (221)
274 COG0457 NrfG FOG: TPR repeat [ 90.5 13 0.00027 33.5 25.9 222 172-406 37-268 (291)
275 PF00637 Clathrin: Region in C 90.3 0.56 1.2E-05 39.9 5.2 85 164-267 13-97 (143)
276 COG3629 DnrI DNA-binding trans 89.9 2.3 5.1E-05 40.3 9.2 76 240-315 153-236 (280)
277 PF02259 FAT: FAT domain; Int 89.7 23 0.00049 35.2 18.3 148 269-419 144-303 (352)
278 PF02259 FAT: FAT domain; Int 89.5 16 0.00035 36.3 15.9 181 247-438 5-214 (352)
279 COG1747 Uncharacterized N-term 89.5 27 0.00059 35.8 18.9 175 238-419 64-250 (711)
280 KOG4570 Uncharacterized conser 89.2 1.2 2.7E-05 42.1 6.6 102 85-188 57-165 (418)
281 KOG0890 Protein kinase of the 89.0 67 0.0014 39.6 22.5 311 97-439 1388-1733(2382)
282 KOG2066 Vacuolar assembly/sort 88.9 38 0.00082 36.7 24.5 165 99-272 363-537 (846)
283 COG4649 Uncharacterized protei 88.6 9.4 0.0002 33.1 10.8 50 353-402 143-195 (221)
284 KOG4234 TPR repeat-containing 88.6 1.9 4E-05 38.2 6.9 88 352-439 105-199 (271)
285 PF10602 RPN7: 26S proteasome 88.4 7.1 0.00015 34.5 10.8 58 242-299 38-101 (177)
286 PF10602 RPN7: 26S proteasome 88.1 8.6 0.00019 34.0 11.1 94 125-220 38-140 (177)
287 PF13176 TPR_7: Tetratricopept 87.8 1.1 2.4E-05 27.5 3.8 24 377-400 2-25 (36)
288 COG3947 Response regulator con 87.5 26 0.00057 33.2 15.5 59 378-436 283-341 (361)
289 PF13176 TPR_7: Tetratricopept 87.2 1.2 2.7E-05 27.3 3.8 24 274-297 2-25 (36)
290 PF09613 HrpB1_HrpK: Bacterial 87.1 4.3 9.3E-05 34.8 8.1 69 354-422 22-92 (160)
291 KOG2114 Vacuolar assembly/sort 86.9 18 0.00039 39.3 14.1 118 95-220 337-458 (933)
292 KOG4570 Uncharacterized conser 86.8 2.9 6.2E-05 39.7 7.5 98 236-335 60-164 (418)
293 KOG1941 Acetylcholine receptor 86.8 24 0.00052 34.5 13.6 127 276-402 127-274 (518)
294 PRK09687 putative lyase; Provi 86.6 31 0.00067 33.1 25.9 80 89-170 34-117 (280)
295 PF13428 TPR_14: Tetratricopep 86.6 2 4.4E-05 27.7 4.8 27 125-151 3-29 (44)
296 PF13181 TPR_8: Tetratricopept 86.5 1.5 3.2E-05 26.3 3.9 31 376-406 3-33 (34)
297 TIGR02561 HrpB1_HrpK type III 86.5 4.4 9.4E-05 34.2 7.7 52 387-438 23-74 (153)
298 TIGR02508 type_III_yscG type I 86.4 13 0.00028 29.0 9.4 61 247-310 46-106 (115)
299 KOG2066 Vacuolar assembly/sort 86.4 53 0.0012 35.6 22.7 129 91-225 391-537 (846)
300 PF13431 TPR_17: Tetratricopep 86.2 1.3 2.9E-05 26.8 3.5 32 181-213 2-33 (34)
301 PF13170 DUF4003: Protein of u 86.2 31 0.00067 33.4 14.6 131 287-419 78-227 (297)
302 PF07079 DUF1347: Protein of u 85.1 46 0.001 33.7 25.7 195 194-399 299-520 (549)
303 PF02284 COX5A: Cytochrome c o 84.9 6.7 0.00014 30.6 7.3 48 368-415 39-86 (108)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 84.6 6.6 0.00014 30.3 7.1 48 368-415 36-83 (103)
305 PF02284 COX5A: Cytochrome c o 84.5 8.2 0.00018 30.1 7.7 62 287-350 26-87 (108)
306 PRK11619 lytic murein transgly 84.1 70 0.0015 34.9 31.7 52 383-434 321-372 (644)
307 KOG1498 26S proteasome regulat 83.4 42 0.00091 33.3 13.7 105 346-454 135-258 (439)
308 COG4785 NlpI Lipoprotein NlpI, 83.3 35 0.00076 30.9 14.6 179 254-439 79-268 (297)
309 cd00923 Cyt_c_Oxidase_Va Cytoc 83.1 9.4 0.0002 29.5 7.4 63 286-350 22-84 (103)
310 TIGR02561 HrpB1_HrpK type III 83.0 11 0.00023 31.9 8.4 65 317-386 21-89 (153)
311 KOG0276 Vesicle coat complex C 82.0 39 0.00084 35.5 13.5 139 194-374 615-753 (794)
312 PF13174 TPR_6: Tetratricopept 81.8 3 6.4E-05 24.5 3.8 27 380-406 6-32 (33)
313 PRK15180 Vi polysaccharide bio 81.7 23 0.0005 35.9 11.5 83 353-435 334-418 (831)
314 PF13929 mRNA_stabil: mRNA sta 81.7 23 0.00049 33.7 11.1 56 336-391 196-255 (292)
315 PF00515 TPR_1: Tetratricopept 81.0 3.1 6.6E-05 24.8 3.6 27 273-299 3-29 (34)
316 PF08631 SPO22: Meiosis protei 80.9 54 0.0012 31.4 22.8 157 273-433 86-271 (278)
317 KOG1586 Protein required for f 80.9 46 0.001 30.6 12.6 89 320-408 128-229 (288)
318 PRK15180 Vi polysaccharide bio 80.7 70 0.0015 32.6 20.4 112 73-187 306-420 (831)
319 KOG1585 Protein required for f 80.1 50 0.0011 30.6 15.5 53 274-327 193-248 (308)
320 PF00637 Clathrin: Region in C 80.1 1.3 2.8E-05 37.6 2.3 53 278-330 14-66 (143)
321 KOG1258 mRNA processing protei 79.9 85 0.0018 33.1 23.0 302 122-437 44-395 (577)
322 PF07721 TPR_4: Tetratricopept 79.5 2.7 5.8E-05 23.6 2.7 24 409-432 2-25 (26)
323 PF06552 TOM20_plant: Plant sp 78.9 32 0.0007 30.2 10.2 44 390-440 96-139 (186)
324 PF11207 DUF2989: Protein of u 78.7 22 0.00048 31.9 9.4 78 283-362 119-198 (203)
325 KOG0276 Vesicle coat complex C 78.3 33 0.00072 35.9 11.7 152 31-220 597-748 (794)
326 PF07719 TPR_2: Tetratricopept 78.2 3.8 8.3E-05 24.2 3.5 29 409-437 2-30 (34)
327 PF07035 Mic1: Colon cancer-as 78.0 46 0.001 29.0 15.4 120 269-400 27-146 (167)
328 PF13374 TPR_10: Tetratricopep 77.8 4.1 8.9E-05 25.5 3.7 28 409-436 3-30 (42)
329 PF11207 DUF2989: Protein of u 77.5 17 0.00038 32.5 8.5 78 134-213 118-198 (203)
330 PF13374 TPR_10: Tetratricopep 76.0 5.2 0.00011 24.9 3.8 26 273-298 4-29 (42)
331 PF07721 TPR_4: Tetratricopept 75.6 5.8 0.00012 22.2 3.4 22 243-264 4-25 (26)
332 KOG4648 Uncharacterized conser 75.3 6.8 0.00015 37.7 5.6 110 314-430 105-217 (536)
333 COG3947 Response regulator con 75.3 78 0.0017 30.2 12.8 144 73-220 149-340 (361)
334 KOG3364 Membrane protein invol 74.9 16 0.00035 30.2 6.9 49 388-436 49-99 (149)
335 PF04097 Nic96: Nup93/Nic96; 73.7 1.4E+02 0.0031 32.4 16.7 85 131-220 266-354 (613)
336 COG2976 Uncharacterized protei 73.3 68 0.0015 28.6 14.2 56 246-301 132-189 (207)
337 PRK09687 putative lyase; Provi 73.0 91 0.002 29.9 26.9 84 117-206 31-118 (280)
338 smart00028 TPR Tetratricopepti 72.3 7.8 0.00017 21.7 3.8 28 378-405 5-32 (34)
339 PF13174 TPR_6: Tetratricopept 71.8 5 0.00011 23.5 2.7 29 410-438 2-30 (33)
340 PF14853 Fis1_TPR_C: Fis1 C-te 71.7 21 0.00045 24.3 5.9 26 411-436 4-29 (53)
341 PF13762 MNE1: Mitochondrial s 71.7 54 0.0012 27.8 9.6 92 80-171 25-128 (145)
342 PF13181 TPR_8: Tetratricopept 71.4 8.6 0.00019 22.7 3.8 28 409-436 2-29 (34)
343 KOG2396 HAT (Half-A-TPR) repea 70.8 1.3E+02 0.0029 31.0 18.3 98 302-402 455-558 (568)
344 KOG4648 Uncharacterized conser 70.6 16 0.00036 35.2 7.0 94 278-375 104-199 (536)
345 PRK10941 hypothetical protein; 70.2 22 0.00049 33.8 8.0 63 376-438 183-245 (269)
346 COG2976 Uncharacterized protei 69.9 82 0.0018 28.2 14.1 90 312-406 95-191 (207)
347 KOG1586 Protein required for f 68.8 75 0.0016 29.3 10.3 61 348-408 119-188 (288)
348 COG4785 NlpI Lipoprotein NlpI, 68.7 94 0.002 28.3 13.9 62 123-187 99-162 (297)
349 PF14853 Fis1_TPR_C: Fis1 C-te 68.6 12 0.00026 25.4 4.2 30 380-409 7-36 (53)
350 KOG0890 Protein kinase of the 68.5 3.2E+02 0.0068 34.4 25.4 129 93-230 1421-1552(2382)
351 COG4455 ImpE Protein of avirul 68.4 20 0.00043 32.5 6.6 72 345-416 4-80 (273)
352 COG2909 MalT ATP-dependent tra 68.2 2E+02 0.0044 32.0 23.3 221 204-433 426-684 (894)
353 cd08819 CARD_MDA5_2 Caspase ac 68.2 34 0.00075 25.9 6.8 67 75-143 20-86 (88)
354 PF04097 Nic96: Nup93/Nic96; 68.1 1.9E+02 0.004 31.5 23.6 161 272-434 325-531 (613)
355 TIGR03504 FimV_Cterm FimV C-te 66.3 14 0.0003 24.0 3.9 23 277-299 5-27 (44)
356 smart00386 HAT HAT (Half-A-TPR 66.2 13 0.00028 21.4 3.8 29 388-416 1-29 (33)
357 TIGR02508 type_III_yscG type I 66.2 62 0.0013 25.4 9.6 85 73-161 21-105 (115)
358 PF14561 TPR_20: Tetratricopep 65.7 23 0.00049 27.2 5.8 44 395-438 9-52 (90)
359 PF07163 Pex26: Pex26 protein; 63.3 91 0.002 29.6 10.1 87 278-367 90-183 (309)
360 KOG4077 Cytochrome c oxidase, 60.3 54 0.0012 26.9 7.0 70 289-369 67-136 (149)
361 COG4455 ImpE Protein of avirul 60.2 89 0.0019 28.5 9.0 57 162-219 5-61 (273)
362 PF09477 Type_III_YscG: Bacter 59.6 88 0.0019 24.9 9.1 78 73-153 22-99 (116)
363 TIGR03504 FimV_Cterm FimV C-te 59.6 21 0.00045 23.2 3.9 24 164-187 5-28 (44)
364 KOG4077 Cytochrome c oxidase, 58.5 56 0.0012 26.8 6.8 48 367-414 77-124 (149)
365 PRK12798 chemotaxis protein; R 58.4 2.1E+02 0.0046 28.9 21.9 182 253-435 125-322 (421)
366 COG2909 MalT ATP-dependent tra 58.3 3.1E+02 0.0066 30.7 24.0 296 140-447 298-657 (894)
367 KOG0687 26S proteasome regulat 58.0 1.9E+02 0.0041 28.2 13.2 10 510-519 320-329 (393)
368 PF10579 Rapsyn_N: Rapsyn N-te 56.9 33 0.00071 25.5 4.9 46 318-363 18-64 (80)
369 PF11846 DUF3366: Domain of un 56.8 45 0.00097 29.9 7.2 35 371-405 141-175 (193)
370 PHA02875 ankyrin repeat protei 56.7 2.3E+02 0.005 28.8 16.4 202 78-306 16-230 (413)
371 PF11663 Toxin_YhaV: Toxin wit 56.6 15 0.00033 30.3 3.5 31 136-168 108-138 (140)
372 PF08311 Mad3_BUB1_I: Mad3/BUB 55.8 85 0.0018 25.9 8.0 42 392-433 81-124 (126)
373 PF09670 Cas_Cas02710: CRISPR- 55.5 2.2E+02 0.0047 28.8 12.4 54 280-334 140-197 (379)
374 PF11768 DUF3312: Protein of u 55.4 1.8E+02 0.0039 30.6 11.6 56 244-299 412-472 (545)
375 COG5071 RPN5 26S proteasome re 54.8 1.7E+02 0.0036 28.1 10.2 113 346-458 135-262 (439)
376 KOG3807 Predicted membrane pro 54.7 1.9E+02 0.0042 28.1 10.8 53 315-367 284-336 (556)
377 KOG0292 Vesicle coat complex C 54.5 31 0.00068 37.8 6.3 44 354-400 655-698 (1202)
378 PRK13800 putative oxidoreducta 54.4 3.9E+02 0.0084 30.7 26.3 127 267-401 752-879 (897)
379 PF10579 Rapsyn_N: Rapsyn N-te 54.3 34 0.00074 25.4 4.7 45 386-430 18-65 (80)
380 PF09477 Type_III_YscG: Bacter 54.3 1.1E+02 0.0024 24.4 11.1 39 173-212 21-59 (116)
381 PF10345 Cohesin_load: Cohesin 54.2 3.2E+02 0.007 29.7 26.6 339 63-402 65-522 (608)
382 KOG4234 TPR repeat-containing 53.4 1.7E+02 0.0037 26.4 10.0 93 317-411 106-205 (271)
383 PF14669 Asp_Glu_race_2: Putat 52.1 1.8E+02 0.0038 26.1 15.3 98 260-368 96-207 (233)
384 KOG1550 Extracellular protein 52.0 3.3E+02 0.0072 29.2 21.2 174 139-332 228-423 (552)
385 KOG1464 COP9 signalosome, subu 51.6 2.2E+02 0.0047 26.9 15.1 183 206-402 40-259 (440)
386 PF10366 Vps39_1: Vacuolar sor 51.5 68 0.0015 25.6 6.5 27 273-299 41-67 (108)
387 PF11846 DUF3366: Domain of un 51.4 63 0.0014 28.9 7.2 51 318-368 120-170 (193)
388 PF13929 mRNA_stabil: mRNA sta 51.3 2.3E+02 0.005 27.2 13.6 112 107-218 143-263 (292)
389 KOG0292 Vesicle coat complex C 51.0 1.4E+02 0.003 33.2 10.2 159 197-403 624-782 (1202)
390 KOG0545 Aryl-hydrocarbon recep 50.7 1.2E+02 0.0026 28.3 8.4 86 352-437 188-293 (329)
391 PRK13800 putative oxidoreducta 50.4 4.5E+02 0.0097 30.3 26.7 252 89-375 632-885 (897)
392 PF13762 MNE1: Mitochondrial s 50.3 1.4E+02 0.003 25.3 8.4 74 244-317 43-126 (145)
393 PF14863 Alkyl_sulf_dimr: Alky 48.2 90 0.0019 26.4 7.0 63 358-423 57-119 (141)
394 PF07163 Pex26: Pex26 protein; 47.6 1.5E+02 0.0032 28.2 8.8 87 128-216 88-181 (309)
395 PF10366 Vps39_1: Vacuolar sor 46.8 1.3E+02 0.0028 24.0 7.5 27 125-151 41-67 (108)
396 COG5108 RPO41 Mitochondrial DN 46.2 1.2E+02 0.0025 32.6 8.6 47 276-322 33-81 (1117)
397 PRK10564 maltose regulon perip 46.1 37 0.0008 32.5 4.8 41 273-313 259-299 (303)
398 cd08326 CARD_CASP9 Caspase act 45.7 62 0.0014 24.5 5.2 63 76-142 18-80 (84)
399 KOG1308 Hsp70-interacting prot 45.6 14 0.00031 35.7 2.1 114 318-434 126-241 (377)
400 KOG1550 Extracellular protein 45.0 4.2E+02 0.0091 28.4 16.9 179 256-440 228-429 (552)
401 PF11663 Toxin_YhaV: Toxin wit 45.0 22 0.00047 29.4 2.7 33 282-316 106-138 (140)
402 KOG4642 Chaperone-dependent E3 45.0 72 0.0016 29.5 6.2 84 316-402 20-106 (284)
403 PF06957 COPI_C: Coatomer (COP 44.1 92 0.002 31.7 7.5 109 281-407 214-333 (422)
404 PRK10941 hypothetical protein; 43.6 1.3E+02 0.0028 28.7 8.1 65 346-410 185-251 (269)
405 PF06552 TOM20_plant: Plant sp 43.6 38 0.00083 29.8 4.1 45 390-434 51-99 (186)
406 KOG2063 Vacuolar assembly/sort 43.4 5.4E+02 0.012 29.2 16.8 111 95-205 507-638 (877)
407 PF04034 DUF367: Domain of unk 43.2 1.9E+02 0.0041 23.8 8.7 89 209-297 31-125 (127)
408 PF11848 DUF3368: Domain of un 43.1 89 0.0019 20.6 5.0 32 282-313 13-44 (48)
409 PF04190 DUF410: Protein of un 42.8 3E+02 0.0065 26.1 15.1 81 341-437 89-170 (260)
410 PF14689 SPOB_a: Sensor_kinase 42.3 38 0.00083 23.8 3.4 23 276-298 28-50 (62)
411 PF12862 Apc5: Anaphase-promot 41.8 85 0.0019 24.1 5.7 53 384-436 8-69 (94)
412 KOG4279 Serine/threonine prote 41.3 72 0.0016 34.5 6.4 165 240-407 201-399 (1226)
413 PF09986 DUF2225: Uncharacteri 41.3 1.6E+02 0.0034 27.0 8.1 62 377-438 121-195 (214)
414 cd08819 CARD_MDA5_2 Caspase ac 41.0 1.1E+02 0.0024 23.3 5.7 39 252-291 48-86 (88)
415 KOG1114 Tripeptidyl peptidase 40.3 6.1E+02 0.013 28.9 14.5 38 319-356 1244-1281(1304)
416 PF14669 Asp_Glu_race_2: Putat 39.8 2.8E+02 0.006 24.9 14.3 58 162-219 136-207 (233)
417 KOG1464 COP9 signalosome, subu 38.9 3.5E+02 0.0075 25.7 16.7 148 244-398 149-327 (440)
418 KOG0687 26S proteasome regulat 38.5 3.9E+02 0.0085 26.2 12.5 97 193-299 104-209 (393)
419 KOG0991 Replication factor C, 38.4 3.3E+02 0.0072 25.3 10.2 134 246-405 136-269 (333)
420 PF11848 DUF3368: Domain of un 38.1 1.1E+02 0.0023 20.2 4.8 31 170-200 14-44 (48)
421 KOG0376 Serine-threonine phosp 37.7 25 0.00053 35.8 2.4 96 312-410 10-108 (476)
422 KOG4507 Uncharacterized conser 37.0 1E+02 0.0023 32.4 6.6 70 348-417 648-719 (886)
423 PF11838 ERAP1_C: ERAP1-like C 36.1 4.1E+02 0.0089 25.7 19.6 176 255-431 55-260 (324)
424 KOG0991 Replication factor C, 36.0 3.6E+02 0.0079 25.1 11.4 57 259-317 227-283 (333)
425 PF10155 DUF2363: Uncharacteri 35.5 2.5E+02 0.0055 23.1 10.0 95 126-220 21-125 (126)
426 COG1747 Uncharacterized N-term 35.2 5.5E+02 0.012 26.9 20.8 93 157-266 65-157 (711)
427 PF12862 Apc5: Anaphase-promot 34.5 1.7E+02 0.0037 22.5 6.3 24 380-403 47-70 (94)
428 COG4976 Predicted methyltransf 34.5 63 0.0014 29.6 4.2 56 352-407 5-62 (287)
429 PHA02875 ankyrin repeat protei 33.6 5.2E+02 0.011 26.2 12.6 108 103-218 10-124 (413)
430 PF04190 DUF410: Protein of un 33.3 4.3E+02 0.0092 25.0 18.6 83 238-335 88-170 (260)
431 cd08332 CARD_CASP2 Caspase act 33.2 1.4E+02 0.003 22.9 5.4 60 76-139 22-81 (90)
432 PF14689 SPOB_a: Sensor_kinase 32.8 63 0.0014 22.7 3.3 30 122-151 22-51 (62)
433 PRK10564 maltose regulon perip 32.6 67 0.0015 30.8 4.3 30 126-155 260-289 (303)
434 PF07575 Nucleopor_Nup85: Nup8 32.5 6.6E+02 0.014 27.0 13.9 314 91-442 148-529 (566)
435 KOG4507 Uncharacterized conser 31.7 2.2E+02 0.0047 30.2 7.8 134 302-438 567-706 (886)
436 KOG2659 LisH motif-containing 31.2 4.2E+02 0.0092 24.4 9.4 93 273-368 28-129 (228)
437 PF13934 ELYS: Nuclear pore co 31.2 4.3E+02 0.0092 24.4 12.4 127 243-377 79-207 (226)
438 cd00280 TRFH Telomeric Repeat 30.8 2.9E+02 0.0062 24.6 7.4 35 349-383 118-152 (200)
439 smart00777 Mad3_BUB1_I Mad3/BU 29.6 3.2E+02 0.007 22.5 8.2 40 393-432 82-123 (125)
440 KOG0686 COP9 signalosome, subu 29.2 6.2E+02 0.013 25.7 13.8 89 242-332 152-255 (466)
441 KOG2034 Vacuolar sorting prote 29.2 8.7E+02 0.019 27.4 16.0 170 201-399 366-555 (911)
442 PF04090 RNA_pol_I_TF: RNA pol 29.0 4.3E+02 0.0094 23.8 10.0 126 272-414 42-184 (199)
443 KOG1524 WD40 repeat-containing 29.0 2.5E+02 0.0054 29.3 7.7 89 341-432 572-668 (737)
444 KOG3824 Huntingtin interacting 28.9 1.1E+02 0.0025 29.3 5.0 58 353-410 127-186 (472)
445 PF04034 DUF367: Domain of unk 28.8 3.3E+02 0.0072 22.4 7.6 57 343-399 67-124 (127)
446 KOG2300 Uncharacterized conser 28.7 6.9E+02 0.015 26.1 18.8 129 134-268 334-473 (629)
447 KOG0686 COP9 signalosome, subu 28.1 6.5E+02 0.014 25.6 12.2 186 93-314 151-352 (466)
448 PF11123 DNA_Packaging_2: DNA 28.0 1.5E+02 0.0032 21.7 4.3 32 73-105 13-44 (82)
449 COG0735 Fur Fe2+/Zn2+ uptake r 27.7 3E+02 0.0065 23.3 7.1 45 312-357 26-70 (145)
450 PF11768 DUF3312: Protein of u 27.4 7.1E+02 0.015 26.4 10.8 57 96-152 412-473 (545)
451 COG5191 Uncharacterized conser 26.9 1.6E+02 0.0034 28.5 5.6 78 338-415 103-183 (435)
452 KOG2063 Vacuolar assembly/sort 26.8 9.9E+02 0.021 27.2 16.0 113 241-354 505-638 (877)
453 PF12796 Ank_2: Ankyrin repeat 26.8 2.2E+02 0.0048 21.1 5.8 50 103-158 5-54 (89)
454 PF08311 Mad3_BUB1_I: Mad3/BUB 26.7 3.6E+02 0.0078 22.1 8.4 43 176-218 81-124 (126)
455 PF07720 TPR_3: Tetratricopept 26.6 1.6E+02 0.0035 18.0 4.3 18 379-396 6-23 (36)
456 COG2178 Predicted RNA-binding 26.5 4.8E+02 0.01 23.5 8.9 18 419-436 132-149 (204)
457 COG5108 RPO41 Mitochondrial DN 25.8 8.9E+02 0.019 26.4 11.1 113 245-368 33-159 (1117)
458 KOG4567 GTPase-activating prot 25.3 6.4E+02 0.014 24.5 10.2 72 291-368 263-344 (370)
459 smart00544 MA3 Domain in DAP-5 25.3 3.4E+02 0.0075 21.4 7.2 22 129-150 8-29 (113)
460 PRK11639 zinc uptake transcrip 25.3 2.7E+02 0.0059 24.3 6.7 61 297-359 17-77 (169)
461 PF10255 Paf67: RNA polymerase 25.3 1.4E+02 0.0031 30.2 5.4 69 194-267 123-191 (404)
462 COG5187 RPN7 26S proteasome re 25.2 6.2E+02 0.014 24.4 10.9 11 510-520 334-344 (412)
463 PRK13342 recombination factor 25.1 7.5E+02 0.016 25.3 14.3 167 173-367 152-330 (413)
464 PF10255 Paf67: RNA polymerase 25.0 5.8E+02 0.013 26.0 9.6 58 241-298 123-191 (404)
465 PF12926 MOZART2: Mitotic-spin 25.0 3.1E+02 0.0068 20.9 7.0 43 179-221 29-71 (88)
466 PRK11639 zinc uptake transcrip 24.9 3.3E+02 0.007 23.8 7.1 33 176-208 43-75 (169)
467 KOG4279 Serine/threonine prote 24.8 3.1E+02 0.0068 30.0 7.8 25 275-299 205-229 (1226)
468 KOG2297 Predicted translation 24.6 6.6E+02 0.014 24.4 15.1 180 227-429 153-342 (412)
469 PRK09857 putative transposase; 24.5 5.3E+02 0.012 24.9 9.1 64 377-440 209-272 (292)
470 COG2042 Uncharacterized conser 24.5 4.7E+02 0.01 22.7 8.6 92 207-298 78-175 (179)
471 COG2178 Predicted RNA-binding 24.5 3.4E+02 0.0074 24.3 6.8 54 247-300 36-98 (204)
472 cd07153 Fur_like Ferric uptake 24.4 1.6E+02 0.0035 23.5 4.8 46 277-322 6-51 (116)
473 KOG3364 Membrane protein invol 24.1 4.4E+02 0.0095 22.2 8.3 70 340-409 30-106 (149)
474 KOG4521 Nuclear pore complex, 23.8 1.2E+03 0.027 27.3 15.2 22 246-267 926-947 (1480)
475 PF02607 B12-binding_2: B12 bi 23.7 1.2E+02 0.0027 22.1 3.7 39 282-320 12-50 (79)
476 COG0735 Fur Fe2+/Zn2+ uptake r 23.5 3.8E+02 0.0081 22.7 7.0 61 147-208 10-70 (145)
477 KOG2396 HAT (Half-A-TPR) repea 23.3 8.8E+02 0.019 25.4 27.1 65 122-188 104-170 (568)
478 COG4976 Predicted methyltransf 23.3 1.5E+02 0.0033 27.3 4.6 55 384-438 5-59 (287)
479 KOG0551 Hsp90 co-chaperone CNS 23.2 3.9E+02 0.0084 26.3 7.5 83 350-432 89-177 (390)
480 PF07064 RIC1: RIC1; InterPro 23.2 6.5E+02 0.014 23.8 14.5 81 352-438 163-250 (258)
481 PF02847 MA3: MA3 domain; Int 22.8 2.5E+02 0.0055 22.2 5.7 21 277-297 8-28 (113)
482 PF11817 Foie-gras_1: Foie gra 22.4 3.3E+02 0.0072 25.5 7.2 16 131-146 18-33 (247)
483 PF08967 DUF1884: Domain of un 22.1 1.1E+02 0.0023 22.9 2.8 26 468-493 8-33 (85)
484 smart00638 LPD_N Lipoprotein N 22.0 1E+03 0.022 25.6 24.3 60 90-151 308-368 (574)
485 PF01475 FUR: Ferric uptake re 21.8 1.5E+02 0.0032 24.0 4.1 46 276-321 12-57 (120)
486 PF04910 Tcf25: Transcriptiona 21.6 8.2E+02 0.018 24.5 14.7 64 373-436 99-167 (360)
487 KOG4642 Chaperone-dependent E3 21.4 6.8E+02 0.015 23.5 9.9 114 281-399 20-142 (284)
488 PF09868 DUF2095: Uncharacteri 21.2 3.3E+02 0.0071 21.9 5.5 41 63-104 67-107 (128)
489 COG4003 Uncharacterized protei 21.2 2.7E+02 0.0059 20.8 4.7 36 163-199 36-71 (98)
490 PF08225 Antimicrobial19: Pseu 20.9 45 0.00097 17.4 0.5 12 538-549 10-21 (23)
491 PF12968 DUF3856: Domain of Un 20.8 4.8E+02 0.01 21.4 10.3 21 343-363 56-76 (144)
492 PF11817 Foie-gras_1: Foie gra 20.6 6.2E+02 0.014 23.6 8.6 53 382-434 186-244 (247)
493 PF11525 CopK: Copper resistan 20.6 21 0.00045 25.4 -1.0 22 554-575 9-30 (73)
494 PRK02287 hypothetical protein; 20.4 5.9E+02 0.013 22.3 8.1 57 344-400 109-166 (171)
495 cd08323 CARD_APAF1 Caspase act 20.3 3.7E+02 0.0081 20.4 5.6 63 76-142 16-78 (86)
496 smart00804 TAP_C C-terminal do 20.2 93 0.002 22.0 2.2 23 136-158 38-61 (63)
497 PF12069 DUF3549: Protein of u 20.2 8.5E+02 0.018 24.1 18.9 111 209-335 148-259 (340)
498 PF09454 Vps23_core: Vps23 cor 20.1 2.4E+02 0.0053 20.1 4.3 62 264-326 1-62 (65)
499 cd00280 TRFH Telomeric Repeat 20.0 3.5E+02 0.0076 24.1 6.0 30 380-410 117-146 (200)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-112 Score=926.25 Aligned_cols=555 Identities=39% Similarity=0.689 Sum_probs=543.4
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVA 95 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~ 95 (577)
...+|+++|.++.+.|++++|+++|.+|.... +..||..||+.+|.+|.+ ++.+.++|..|.+.|+.||+.+|
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGC----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 44589999999999999999999999998652 357999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
|.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc----------------------
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---------------------- 233 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~---------------------- 233 (577)
.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||++|.+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999988
Q ss_pred --------------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 037414 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281 (577)
Q Consensus 234 --------------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 281 (577)
.|++||..+||+||++|+++|++++|.++|++|.+||+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
+++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
.+++++|+..|+..+|++|+.+|..+|+++.|..+++++.+.+|++..+|..|+++|++.|+|++|.++++.|+++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhcccc
Q 037414 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521 (577)
Q Consensus 442 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 521 (577)
.||+||+++++.+|.|++||..||+.++++..+.++..+|++.||.||+.++++++++++|+..++.|||+||++|||+.
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~ 641 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLIN 641 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecccccCCchhhHHhhhhccCceEEEecCCcccccccccccCCCCC
Q 037414 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRDYW 577 (577)
Q Consensus 522 ~~~~~~~~~~~~l~~~~~~~~~~~~is~~~~~~~~~~~~~~~h~~~~g~~s~~~~w 577 (577)
+|+|.||||+||||+|+|||+|+|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 642 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 642 TSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-109 Score=923.39 Aligned_cols=551 Identities=37% Similarity=0.667 Sum_probs=536.1
Q ss_pred ccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHH
Q 037414 18 RFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIV 94 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~ 94 (577)
++..+|+++|.+|.+.|++++|+++|..|... |..||..||+++|.+|.+ ++.|.++|..+.+.|+.||..+
T Consensus 251 ~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-----g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 251 RDCISWNAMISGYFENGECLEGLELFFTMREL-----SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 46778999999999999999999999999876 789999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
||+||.+|+++|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc---------------------
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~--------------------- 233 (577)
+.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|.++|+++||++|.+
T Consensus 406 ~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~ 485 (857)
T PLN03077 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL 485 (857)
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999976
Q ss_pred --------------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 037414 234 --------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAY 281 (577)
Q Consensus 234 --------------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 281 (577)
.|+.+|..++|+||++|+++|++++|.++|+++ .+|+++||+||.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHH
Confidence 456667777788889999999999999999999 99999999999999
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987889999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
.+++++|+++||..+|++|+.+|..+|+.+.++.+.+++.+++|+++..|..|+++|+..|+|++|.++++.|+++|+++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhcccc
Q 037414 442 IPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIA 521 (577)
Q Consensus 442 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 521 (577)
.||+||+++++++|.|.+||.+||+.++||.+|+++..+|++.||.||+..++ ++++++|+..++.|||+||++|||++
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999998877 55778899999999999999999999
Q ss_pred CCCCCeEEEEecccccCCchhhHHhhhhccCceEEEecCCcccccccccccCCC
Q 037414 522 TPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRVIIVRDANRFHHFEGGACSCRD 575 (577)
Q Consensus 522 ~~~~~~~~~~~~l~~~~~~~~~~~~is~~~~~~~~~~~~~~~h~~~~g~~s~~~ 575 (577)
+|+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6e-68 Score=589.98 Aligned_cols=536 Identities=23% Similarity=0.376 Sum_probs=483.7
Q ss_pred ccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHH
Q 037414 18 RFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIV 94 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~ 94 (577)
...+.++.++.++.+.|++++|+++|..|... |..|+..+|..++.+|.. +..|.++|..+.+.|..++..+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQEL-----RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchH
Confidence 34555789999999999999999999999876 678999999999999987 8899999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
+|+|+.+|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc---------------------
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA--------------------- 233 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~--------------------- 233 (577)
..+.+++..+.+.|+.||..++|+||++|+++|++++|.++|++|+++|+++||++|.+
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHH
Q 037414 234 ---------------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280 (577)
Q Consensus 234 ---------------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 280 (577)
.|+.||..+||+|+++|+++|++++|.++|++|.+||.++||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 57889999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+. |+.|+..+|++||++|+++|++++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999754 999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 361 ALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 361 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
|.++|++|. +||..+|++++.+|.+.|+.++|..+|++|.+..+++..+|..++.+|++.|..+.+.+++..|.+.|+.
T Consensus 443 A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 999999997 6899999999999999999999999999998766777788888888777777777777777777777664
Q ss_pred cCCc-----------------------------eeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCC
Q 037414 441 KIPG-----------------------------WTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTN 491 (577)
Q Consensus 441 ~~~~-----------------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~ 491 (577)
++.. .+|..+ +.|+..|++.+++. +++++|++.|+.||..
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~l-------I~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL-------LTGYVAHGKGSMAV----ELFNRMVESGVNPDEV 590 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHH-------HHHHHHcCCHHHHH----HHHHHHHHcCCCCCcc
Confidence 4321 223222 44566677777766 7899999999999999
Q ss_pred ccccccchhhhhccc---cccchHhHHHhccccCCCCCeEEEEecccccCCchhhHHhhhhccCce------EEEecCCc
Q 037414 492 FELHDVDEEVKVGNL---YSHSEKLAIAFGLIATPEGTHIRIMKNLRVCGDCHSFIKHVSAITRRV------IIVRDANR 562 (577)
Q Consensus 492 ~~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~is~~~~~~------~~~~~~~~ 562 (577)
++...+..+.+.+.+ ....+.|.-.+|+.|...++. ++++.+..+|+..+|.++|.+|+.++ .++..|+.
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 998888888877765 445677776789887766555 79999999999999999999997554 55667777
Q ss_pred cccccccccc
Q 037414 563 FHHFEGGACS 572 (577)
Q Consensus 563 ~h~~~~g~~s 572 (577)
+.+.+.|+..
T Consensus 670 ~~~~e~~e~~ 679 (857)
T PLN03077 670 HRHVELGELA 679 (857)
T ss_pred cCChHHHHHH
Confidence 7777766543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-59 Score=512.04 Aligned_cols=514 Identities=15% Similarity=0.177 Sum_probs=430.4
Q ss_pred ccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHH
Q 037414 18 RFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIV 94 (577)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~ 94 (577)
.....+..++..+.+.|++++|+++|+.|.... -..|+..+++.++.+|.+ ...|..++..|.. ||..+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~g----vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRG----LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCC----CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 345567788888899999999999999998762 135777788888888876 8888888888863 99999
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKE----RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
||.||.+|++.|++++|.++|+.|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999974 68999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~ 250 (577)
.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.... .|+.||..+|++||.+|
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~----------~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAET----------HPIDPDHITVGALMKAC 589 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc----------CCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997531 46789999999999999
Q ss_pred HhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 251 AKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
+++|++++|.++|++|.+ |+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999975 6779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
++|+.|.+. |+.|+..+|++||++|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.
T Consensus 670 ~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 670 EILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999754 99999999999999999999999999999998 67899999999999999999999999999999887
Q ss_pred C-CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEE-------------CCEEEEEEecCCCCcccH-
Q 037414 404 Q-PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV-------------ENKIHQFSVGDSTHPQSE- 468 (577)
Q Consensus 404 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~-------------~~~~~~~~~~~~~~~~~~- 468 (577)
+ .++..+|..++.+|.+.|++++|.+++++|.+.|+.++.......+ ...+..|-.+ ++...
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g---~~~~~n 825 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG---RPQIEN 825 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc---cccccc
Confidence 6 6677899999999999999999999999999999977652211111 0011111111 11100
Q ss_pred HHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhccccCCCCCeE--EEEecccccCCchhhHHh
Q 037414 469 EIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTHI--RIMKNLRVCGDCHSFIKH 546 (577)
Q Consensus 469 ~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 546 (577)
.-..+...++++|.+.|+.||..++...+....+.+. ......+--.+++.+.+++... .+++.+ |..-++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHH
Confidence 0112344899999999999999887665522222221 2334566666787777776443 244543 1112578888
Q ss_pred hhhccCceEE
Q 037414 547 VSAITRRVII 556 (577)
Q Consensus 547 is~~~~~~~~ 556 (577)
+.+|..+.|+
T Consensus 903 ~~em~~~Gi~ 912 (1060)
T PLN03218 903 LEEAASLGVV 912 (1060)
T ss_pred HHHHHHcCCC
Confidence 8888777643
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-57 Score=496.59 Aligned_cols=400 Identities=15% Similarity=0.180 Sum_probs=374.5
Q ss_pred chhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037414 22 SSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKL 98 (577)
Q Consensus 22 ~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (577)
.++.++.+|.+.|..++|+++|..|. .||..+|+.+|.+|.+ ++.|.++|+.|.+.|+.||..+||+|
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~---------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL 478 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIR---------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcC---------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34566777999999999999999885 3899999999999998 99999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 99 LYIYALHKALTDAHALFNGMK----ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
|.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~ 558 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999998 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh
Q 037414 175 VMGRLIHDIVLK--SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252 (577)
Q Consensus 175 ~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~ 252 (577)
++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+ .|+.|+..+||.+|.+|++
T Consensus 559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e------------~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE------------YNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------cCCCCChHHHHHHHHHHHh
Confidence 999999999987 67899999999999999999999999999999988 4678899999999999999
Q ss_pred cCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 328 (577)
.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999974 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Q 037414 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ- 404 (577)
Q Consensus 329 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~- 404 (577)
|++|.+ .|+.|+..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+|.+.|++++|.+++++|.+.+
T Consensus 707 f~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi 785 (1060)
T PLN03218 707 YEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785 (1060)
T ss_pred HHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999965 599999999999999999999999999999998 789999999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHhc----c-------------------CChhHHHHHHHHHhhCCCccCC
Q 037414 405 PQNPGHYVLLSNVYAN----A-------------------GRWQDVAKIRDLMTRRRLKKIP 443 (577)
Q Consensus 405 p~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~~~~ 443 (577)
.++..+|..|+.+|.+ + +..++|..+|++|.+.|+.|+.
T Consensus 786 ~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 786 KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 5567889998876432 2 1236799999999999998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.7e-53 Score=461.80 Aligned_cols=482 Identities=18% Similarity=0.199 Sum_probs=412.1
Q ss_pred CChhhHHHHHHhccC---hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC----CCCcchHHHH
Q 037414 58 VDPKFFISSLLSCRN---IFQIRQVHAQIVAGG-TLTNLIVANKLLYIYALHKALTDAHALFNGMK----ERDSVSWSVM 129 (577)
Q Consensus 58 p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~l 129 (577)
++..++++++.++.+ +++|.++|..|.+.+ +.||..+|++++.++++.++++.|.+++..|. .||..+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455688888887766 999999999998865 78999999999999999999999999999986 3799999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 037414 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209 (577)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 209 (577)
+..|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHH
Q 037414 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 210 ~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (577)
+.+.+++..+.+ .|+.||..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++
T Consensus 241 ~~~~~l~~~~~~------------~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~e 308 (697)
T PLN03081 241 RAGQQLHCCVLK------------TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEE 308 (697)
T ss_pred HHHHHHHHHHHH------------hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHH
Confidence 999999988766 57788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 290 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |+.|+..+|++||++|+++|++++|.++|++|.
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999765 999999999999999999999999999999997
Q ss_pred CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHhccCChhHHHHHHHHHhh-CCCccCCceeE
Q 037414 370 VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR-RRLKKIPGWTW 447 (577)
Q Consensus 370 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~s~ 447 (577)
+||..+|++||.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|.+ .|+.|... .|
T Consensus 388 -~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-~y 465 (697)
T PLN03081 388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-HY 465 (697)
T ss_pred -CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-ch
Confidence 6899999999999999999999999999999876 56788999999999999999999999999986 47765431 22
Q ss_pred EEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhhhccccccchHhHHHhccccCCCCCe
Q 037414 448 IEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVKVGNLYSHSEKLAIAFGLIATPEGTH 527 (577)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~ 527 (577)
..+ +.+....+..++++ +.+++.++.||..+|...+..+.+.+.+-.--+-....+++.|...+..
T Consensus 466 ~~l-------i~~l~r~G~~~eA~-------~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y 531 (697)
T PLN03081 466 ACM-------IELLGREGLLDEAY-------AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531 (697)
T ss_pred HhH-------HHHHHhcCCHHHHH-------HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence 111 22333445555554 3345668999988776666666554443111111112245555545566
Q ss_pred EEEEecccccCCchhhHHhhhhccCceEEE-------ecCCccccccccccc
Q 037414 528 IRIMKNLRVCGDCHSFIKHVSAITRRVIIV-------RDANRFHHFEGGACS 572 (577)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~is~~~~~~~~~-------~~~~~~h~~~~g~~s 572 (577)
+.+++-...+|+..+|.++..+|..+.+.. --.+..|.|-.|..+
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 667778889999999999999998886421 222455667655433
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.96 E-value=4.9e-30 Score=207.12 Aligned_cols=106 Identities=67% Similarity=1.066 Sum_probs=96.2
Q ss_pred ceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccchhhh--------hccccccchHhHH
Q 037414 444 GWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVDEEVK--------VGNLYSHSEKLAI 515 (577)
Q Consensus 444 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~~~la~ 515 (577)
|++|+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ ...++.|||+||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899987 9999999999988 456677889999999988888877655 4578999999999
Q ss_pred HhccccCCCCCeEEEEecc-cccCCchhhHHhhhhccCceEEEecCCcccccc
Q 037414 516 AFGLIATPEGTHIRIMKNL-RVCGDCHSFIKHVSAITRRVIIVRDANRFHHFE 567 (577)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~is~~~~~~~~~~~~~~~h~~~ 567 (577)
+||++++ +|+||+ |+|+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.7e-23 Score=237.27 Aligned_cols=395 Identities=12% Similarity=0.023 Sum_probs=242.1
Q ss_pred cchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037414 21 SSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLY 100 (577)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 100 (577)
..+..+...+...|++++|.+.|..+... .+........+..+....++++.|.+.+..+.+.+ +.+..++..+..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 541 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAG 541 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 34555555566666666666666655433 11111111112222222333666666666666554 445566666666
Q ss_pred HHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHH
Q 037414 101 IYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMG 177 (577)
Q Consensus 101 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 177 (577)
.|.+.|+.++|...|+++.. .+...+..++..|.+.|++++|.++++.+.+. .+.+..+|..+...+...|++++|
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666666533 13445566666666666666776666666653 233455666666666666777777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHH
Q 037414 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257 (577)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~ 257 (577)
...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+.+ +.+...+..++..+.+.|+++
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-------------PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHcCCHH
Confidence 77776666553 3455566666666767777777777666654322 224556666777777777777
Q ss_pred HHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 258 SAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 258 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+|..+++.+.+ .+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|+.++|.+.++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777654 344556666677777777777777777776643 3445555666677777777777777777664
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
. .+.+...+..+...|.+.|++++|.+.|+++ ... ++..++..+...+...|+ ++|+..++++.+..|+++..+.
T Consensus 765 ~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 T--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred h--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 3 3345666666777777777777777777666 222 345566666666666666 6677777777666666666666
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
.+..+|...|++++|.++++++.+.+.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666667777777777777766666543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.1e-22 Score=228.27 Aligned_cols=412 Identities=11% Similarity=-0.016 Sum_probs=288.6
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (577)
....+..+...+.+.|++++|++.|..+.... +....-...+..+....++.+.|...+..+.+.. +.+......+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 437 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLL 437 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHH
Confidence 34456667777788888888888887765431 1111111112222223333666666666666554 2233444555
Q ss_pred HHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 99 LYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
+..|.+.|++++|.++++.+.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 516 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD 516 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 6666666666666666666543 244556666666666666666666666666532 123344555555566666666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh---hHHHHHHhc------------------C
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL---VTWTVMIGA------------------N 234 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~i~~------------------~ 234 (577)
+|.+.++.+.+.+ +.+..++..+...|.+.|+.++|...|+++.+.++ ..+..+... .
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666553 34555666666666666666666666665533221 111111110 2
Q ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 037414 235 KFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311 (577)
Q Consensus 235 g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 311 (577)
..+.+..++..+..+|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|...|+++.+.. +.+..++..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3345677888999999999999999999998764 356678888999999999999999999988752 445678888
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCH
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNV 390 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~ 390 (577)
+...+...|++++|.++++.+.+. .+++...+..+...+.+.|++++|.+.|+++ ...|+..++..+...+...|+.
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 889999999999999999999654 3456777888889999999999999999987 5567778888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
++|...++++++..|+++..+..++..|...|++++|.+.++++.+...
T Consensus 753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999987653
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.3e-19 Score=184.92 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=227.1
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhCC
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID---QFVCAALVDMYAKCK 207 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 207 (577)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34566777888888888887752 12344677777777788888888888887776532221 246777888888888
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC--C------hhhHHHHHH
Q 037414 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK--N------VISWSAMIA 279 (577)
Q Consensus 208 ~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~--~------~~~~~~li~ 279 (577)
++++|..+|+++.+.+ +.+..+++.++..|.+.|++++|.+.|+.+.+. + ...|..+..
T Consensus 122 ~~~~A~~~~~~~l~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred CHHHHHHHHHHHHcCC-------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 8888888888886532 224567778888888888888888888887642 1 123556777
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCC
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGR 357 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~ 357 (577)
.+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ...++.++.+|.+.|+
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCC
Confidence 8888999999999999988753 234556777888899999999999999998743 343 4567888999999999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc---cCChhHHHHHHHH
Q 037414 358 LDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN---AGRWQDVAKIRDL 433 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 433 (577)
+++|.+.++++ ...|+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999987 4567777778888899999999999999999999988875 56666665553 5689999999999
Q ss_pred HhhCCCccCCce
Q 037414 434 MTRRRLKKIPGW 445 (577)
Q Consensus 434 m~~~g~~~~~~~ 445 (577)
|.+++++++|.+
T Consensus 344 ~~~~~~~~~p~~ 355 (389)
T PRK11788 344 LVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHhCCCCE
Confidence 999999888863
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.6e-19 Score=184.39 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=238.9
Q ss_pred HHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---cchHHHHHHHHhcCCC
Q 037414 100 YIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD---SYTLPFVIRACRDRKD 173 (577)
Q Consensus 100 ~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~ 173 (577)
..+...|++++|...|.++.+. +..+|..+...+.+.|++++|..+++.+...+..++ ..++..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456789999999999998753 455788899999999999999999999987532222 2457788888999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC 253 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~ 253 (577)
++.|..++.++.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+...... .....+..+...+.+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV--------EIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHhC
Confidence 999999999998763 5678899999999999999999999999986543221000 0123456788889999
Q ss_pred CCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 254 GSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 254 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|++++|...|+++.+ | +...+..+...|.+.|++++|.++|+++...+......++..+..+|...|++++|...++
T Consensus 194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 194 GDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999864 3 4557888899999999999999999999876433334567889999999999999999999
Q ss_pred HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 037414 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRI---HKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 331 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~ 404 (577)
.+.+ ..|+...+..++..|.+.|++++|.++++++ ...|+...+..++..+.. .|+.+++..+++++++..
T Consensus 274 ~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 274 RALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 9974 3577777788999999999999999999876 667999999988887664 568899999999888754
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3e-19 Score=174.73 Aligned_cols=390 Identities=13% Similarity=0.112 Sum_probs=291.4
Q ss_pred eecccccccccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCC
Q 037414 11 VSISAKLRFFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLT 90 (577)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~ 90 (577)
..+.-.+.+...+..+...+-..|.+++|+++++.|.+.. +...--.....+.+..-++.+.|.+.|...++. .|
T Consensus 107 ~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~---p~fida~inla~al~~~~~~~~a~~~~~~alql--nP 181 (966)
T KOG4626|consen 107 LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELK---PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NP 181 (966)
T ss_pred hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Cc
Confidence 3344445566666777777788888888888888887651 111111222344444445577777777777664 34
Q ss_pred CHHHH-HHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cchHHHHH
Q 037414 91 NLIVA-NKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-SYTLPFVI 165 (577)
Q Consensus 91 ~~~~~-~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 165 (577)
+.+.. +.+-..+-..|++++|...+.+..+ | =.+.|+.|...+-..|+...|+..|++... +.|+ ...|..|-
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLG 259 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLG 259 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHH
Confidence 44433 3344444456888888877766543 3 355788888888888888888888888876 4554 45677888
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
..|...+.+++|...+.+..... +....++..|...|...|.+|-|...+++..+.++ .-...|+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-------------~F~~Ay~N 325 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-------------NFPDAYNN 325 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-------------CchHHHhH
Confidence 88888888888888888777653 44567777888888888999999888888766432 12668889
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCC
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGL 321 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 321 (577)
|..++-..|++.+|.+.|.+... | -..+.+.+...|...|.+++|..+|....+ +.|. ...++.|...|-+.|+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhccc
Confidence 99999999999999999998765 3 345778889999999999999999988876 4454 3567888888999999
Q ss_pred HHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
+++|...+++.+ .++|+ ...|+-+...|-..|+.+.|.+.+.+. .+.|.-. ..+.|...+...|++.+|+..++
T Consensus 404 l~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 404 LDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999887 57887 578888888899999999999988876 6667543 78888899999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhccCChhH
Q 037414 399 SLLERQPQNPGHYVLLSNVYANAGRWQD 426 (577)
Q Consensus 399 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 426 (577)
..+++.|+.+.+|..++-+..--.+|.+
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999999888877666555555
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=2e-18 Score=169.11 Aligned_cols=405 Identities=14% Similarity=0.102 Sum_probs=287.5
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIY 102 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 102 (577)
...+.+-..+.|++++|++.-...... .+...+..-...+..-.+.+.+...+--...++.. +.-..+|+.+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 346777888999999998876655544 22333333334444444444333333222222222 44566788888888
Q ss_pred HcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHH-HHhcCCChHHHH
Q 037414 103 ALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR-ACRDRKDIVMGR 178 (577)
Q Consensus 103 ~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~ 178 (577)
-..|++++|+.+++.+.+. .+..|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+. ..-..|++.+|.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhH
Confidence 8888888888888877653 556788888888888888888888877776 3455443322222 233456666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHH--------------------hcCCCCc
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMI--------------------GANKFLL 238 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i--------------------~~~g~~~ 238 (577)
..+.+.++.. +-=..+|+.|...+-..|++..|...|++...-|+---.+-+ .+....|
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 6666665542 112345666666666666666666666665443221100000 0012222
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHH
Q 037414 239 -DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLL 313 (577)
Q Consensus 239 -~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 313 (577)
...++..|...|-..|.+|-|...|++..+ |+ ...|+.|..++-..|+..+|.+.|.+.... .|+ ....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 355666666777788888888888888764 33 468999999999999999999999998875 444 45778899
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNV 390 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~ 390 (577)
..+...|.+++|..+|.... .+.|. ....+-|...|-+.|++++|...+++. .++|+.. .++.+...|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999887 35565 567888999999999999999999887 7888765 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+.|.+.+.+++..+|.-..++..|..+|-..|+..+|.+-+++..+...
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999999998876543
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=4.2e-16 Score=167.89 Aligned_cols=347 Identities=11% Similarity=0.034 Sum_probs=269.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
++.|...+...++. .|+...|..+...|.+.|++++|+..++...+. +...|..+..+|...|++++|+..|...
T Consensus 143 ~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 143 FNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88899999988764 567888999999999999999999999887653 5567888999999999999998766443
Q ss_pred HHCC----------------------------CCC-CcchHHHHHHH---------------------------------
Q 037414 150 IRCG----------------------------MQL-DSYTLPFVIRA--------------------------------- 167 (577)
Q Consensus 150 ~~~g----------------------------~~p-~~~t~~~ll~~--------------------------------- 167 (577)
...+ ..| +...+..+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 2211 011 11111111000
Q ss_pred ---HhcCCChHHHHHHHHHHHHcC-C-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhh
Q 037414 168 ---CRDRKDIVMGRLIHDIVLKSG-L-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242 (577)
Q Consensus 168 ---~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~ 242 (577)
....+++++|.+.++..++.+ . +.....++.+...|...|++++|...|++..+.++. +...
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-------------~~~~ 367 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-------------VTQS 367 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------cHHH
Confidence 011256778889999888765 2 334567888889999999999999999988764321 3557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
|..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHC
Confidence 77889999999999999999998764 456789999999999999999999999998753 33456777788899999
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-h-------HHHHHHHHHHhcCCH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-G-------LWGALLGACRIHKNV 390 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~g~~ 390 (577)
|++++|...|+..++. .+.+...++.+...|...|++++|.+.|++. .+.|+. . .++..+..+...|++
T Consensus 447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999999753 3334778889999999999999999999986 444431 1 122222334456999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
++|..+++++++.+|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999987653
No 15
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=4.4e-15 Score=162.97 Aligned_cols=370 Identities=9% Similarity=0.024 Sum_probs=244.7
Q ss_pred HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCCh
Q 037414 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 63 ~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 139 (577)
|..+..-.++.+.|.+++....... +.+...+..+...+.+.|++++|..+|++..+ | +...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 4555555555666666666665422 34444566666666666666666666666422 2 344455666666666666
Q ss_pred hHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 140 INCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
++|+..+++..+. .| +.. +..+..++...|+.++|...++++++.. |.+..++..+..++...|..++|.+.++.
T Consensus 100 ~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 100 DEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 6666666666654 23 233 5555555666666666666666666653 33444555566666666666666666655
Q ss_pred CCCCChhH------------------------------------HHHHHhcCCCCcchh-----hHHHHHHHHHhcCCHH
Q 037414 219 MPTRDLVT------------------------------------WTVMIGANKFLLDVI-----LGTAVIDMYAKCGSID 257 (577)
Q Consensus 219 m~~~~~~~------------------------------------~~~~i~~~g~~~~~~-----~~~~Li~~~~~~g~~~ 257 (577)
... ++.. +..++......|+.. .....+..+...|+++
T Consensus 176 ~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 176 ANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 443 1000 000000001112111 1111123445779999
Q ss_pred HHHHHHHhccCCC--hh--hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 258 SAREIFDRMRQKN--VI--SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP---NRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 258 ~A~~~~~~~~~~~--~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
+|...|+.+.+.+ .. .-..+...|...|++++|+..|+++.+..... .......+..++...|++++|.++++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9999999998632 11 12225778999999999999999987643211 12445666778899999999999999
Q ss_pred HhhHhcC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 037414 331 SMWDDFA----------VRPD---VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 331 ~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|+.++|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9975311 1122 234566778899999999999999997 3345 56688899999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++++++.+|+++..+..++..+...|++++|.++++.+.+..
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998654
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3e-16 Score=168.61 Aligned_cols=325 Identities=10% Similarity=-0.018 Sum_probs=228.3
Q ss_pred HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCCh
Q 037414 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 63 ~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~ 139 (577)
+..-+..-+++..|..++..++..... +......+.......|++++|...|+++.. | +...|..+...+.+.|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 333333344478888888887776533 344444455566668888888888888754 3 455677778888888888
Q ss_pred hHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 140 INCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
++|++.|++..+. .| +...+..+...+...|+.++|...+..+.... +.+...+..+ ..+...|++++|...+++
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 8888888888774 44 35566777777888888888888888776654 2233333333 347778888888888887
Q ss_pred CCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHH----HH
Q 037414 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKK----AL 291 (577)
Q Consensus 219 m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~ 291 (577)
+.+.+. .++......+...+.+.|++++|...|++..+ .+...+..+...|.+.|++++ |+
T Consensus 203 ~l~~~~------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 203 LLPFFA------------LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred HHhcCC------------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 765321 12334445566778888888888888887764 345667778888888888875 78
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 037414 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-S 369 (577)
Q Consensus 292 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 369 (577)
..|++..+.. +.+...+..+...+...|++++|...++..++. .|+ ...+..+...|.+.|++++|.+.++++ .
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888887652 234557777888888888888888888888643 343 455666778888888888888888877 3
Q ss_pred CCCCHhH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 370 VEKDEGL-WGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 370 ~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..|+... +..+..++...|+.++|...++++++..|++.
T Consensus 347 ~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 347 EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4565443 33345667888888888888888888887753
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=2.9e-16 Score=180.12 Aligned_cols=355 Identities=12% Similarity=0.054 Sum_probs=230.5
Q ss_pred hccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CCc---chHHHH------------HH
Q 037414 69 SCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDS---VSWSVM------------VG 131 (577)
Q Consensus 69 a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~---~~~~~l------------i~ 131 (577)
..++++.|...+...++.. +.+..++..|...|.+.|++++|+..|++..+ |+. ..|..+ ..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 3444888999999888765 55788888899999999999999999988754 221 123222 33
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 211 (577)
.+.+.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHH
Confidence 5678899999999999998852 2245566677788888999999999999988764 445566666777664 456788
Q ss_pred HHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChH
Q 037414 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGK 288 (577)
Q Consensus 212 A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~ 288 (577)
|...++.+............. ......+..+...+...|++++|.+.|++..+ | +...+..+...|.+.|+++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~----~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIER----SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHH----HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 888777765432111110000 00122344556666666666666666666543 2 2344555666666666666
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHH--------------------------------------------HHHHhccCCHHH
Q 037414 289 KALDLFPMMLSSRVLPNRITFVSL--------------------------------------------LYACSHTGLVEE 324 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~t~~~l--------------------------------------------l~a~~~~g~~~~ 324 (577)
+|...|+++.+.. +.+...+..+ ...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 6666666665431 1122222222 233444445555
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
|..+++. .+++...+..+...|.+.|++++|++.|++. ...| +...+..+...+...|+.++|+..++++.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5544441 1234455566777777888888888887776 3345 455777777778888888888888888777
Q ss_pred cCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 403 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..|+++..+..+..++...|++++|.++++.+....
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 777777777777788888888888888888776543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.78 E-value=5.6e-16 Score=177.80 Aligned_cols=382 Identities=10% Similarity=-0.001 Sum_probs=271.4
Q ss_pred HhhccCCCCCCCCCcccCccCCCCCCCCCCC-ChhhH---HHHHHhccChHHHHHHHHHHHHcCCCC-CHHHHH------
Q 037414 28 IALEPHGHEQNPMNPRVPMQMGPDCQFTRSV-DPKFF---ISSLLSCRNIFQIRQVHAQIVAGGTLT-NLIVAN------ 96 (577)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p-~~~~~---~~ll~a~~~~~~a~~~~~~~~~~g~~~-~~~~~~------ 96 (577)
..+...|++++|+..|+..... .| +...+ ..++...++.++|...+...++..-.. ....+.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA-------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 3466788888888888887754 22 23333 333334444888888888887754221 111121
Q ss_pred ------HHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cchHHHH--
Q 037414 97 ------KLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-SYTLPFV-- 164 (577)
Q Consensus 97 ------~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l-- 164 (577)
.+...+.+.|++++|...|+++.+. +...+..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 2234566788888888888877542 5556777888888888899998888888764 333 2222222
Q ss_pred ----------------------------------------HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 037414 165 ----------------------------------------IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA 204 (577)
Q Consensus 165 ----------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 204 (577)
...+...|++++|.+.+++.++.. +.+..++..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223445678888888888877764 445667777888888
Q ss_pred hCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC----Ch---------
Q 037414 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK----NV--------- 271 (577)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~----~~--------- 271 (577)
+.|++++|...|+++.+.++ .+...+..+...+.+.|+.++|...++.+... +.
T Consensus 507 ~~G~~~~A~~~l~~al~~~P-------------~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~ 573 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKP-------------NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQS 573 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCC-------------CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence 88888888888887654221 13344445555667788888888888887532 11
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 351 (577)
..+..+...+...|+.++|.++++. .+++...+..+...+.+.|+.++|...|+..++. -+.+...+..+...
T Consensus 574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~ 646 (1157)
T PRK11447 574 DQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEV 646 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 1123456678889999999998872 2445556777888999999999999999999853 23357888899999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hhHHHHHHHHhccCC
Q 037414 352 LGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP------GHYVLLSNVYANAGR 423 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~ 423 (577)
|...|++++|++.++.. ...|+ ...+..+..++...|++++|.++++++++..|+++ ..+..+...+...|+
T Consensus 647 ~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 99999999999999987 34454 45677788889999999999999999998876544 356667899999999
Q ss_pred hhHHHHHHHHHhh-CCC
Q 037414 424 WQDVAKIRDLMTR-RRL 439 (577)
Q Consensus 424 ~~~A~~~~~~m~~-~g~ 439 (577)
+++|.+.++.... .|+
T Consensus 727 ~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 727 PQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHHHHHHHHhhcCC
Confidence 9999999987753 344
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.2e-15 Score=163.87 Aligned_cols=321 Identities=10% Similarity=-0.005 Sum_probs=229.3
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCC
Q 037414 97 KLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRK 172 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 172 (577)
.++..+.+.|++++|..+++.... .+...+..++.+....|++++|++.|+++... .| +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcC
Confidence 345566678888888888777643 24445556666777788888888888888874 44 4455666777778888
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK 252 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~ 252 (577)
++++|...++++++.. +.+...+..+...|...|++++|...++.+...++ .+...+..+ ..+..
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-------------~~~~a~~~~-~~l~~ 189 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-------------PRGDMIATC-LSFLN 189 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-------------CCHHHHHHH-HHHHH
Confidence 8888888888887763 44567777888888888888888888876643211 122223223 23677
Q ss_pred cCCHHHHHHHHHhccCC----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH----
Q 037414 253 CGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE---- 324 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---- 324 (577)
.|++++|...++.+.+. +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~ 268 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQ 268 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHH
Confidence 88888888888876542 22334445667778888888888888887653 3345566677778888888875
Q ss_pred HHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
|...++..++ +.| +...+..+...+.+.|++++|...+++. ...|+ ...+..+...+...|++++|...++++.
T Consensus 269 A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 269 AAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7888888764 334 4567778888888888888888888876 34454 4466677777888888888888888888
Q ss_pred hcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 402 ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 402 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+|.++..+..+..++...|++++|.+.+++..+..
T Consensus 346 ~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 346 REKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8888876666666777888888888888888776553
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=2.5e-15 Score=165.22 Aligned_cols=398 Identities=10% Similarity=-0.017 Sum_probs=248.8
Q ss_pred ccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037414 20 FSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL 99 (577)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 99 (577)
......+...|.+.|+.++|+...+..... .|+...|..++....+...|..+++.+.+.. +.+..++..+.
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l-------dP~n~~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la 149 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKR-------HPGDARLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRC 149 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CcccHHHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHH
Confidence 334466777778888888888887777644 4555555555555555777778888887765 45566666666
Q ss_pred HH--------HHcCCChHHHHHHHhcCCCCC--cchHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 037414 100 YI--------YALHKALTDAHALFNGMKERD--SVSWSV-MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168 (577)
Q Consensus 100 ~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 168 (577)
.. |.+.++..+|++ .+...++ ...... +...|.+.|++++|++++.++.+.+.. +..-...|-.+|
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay 226 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVL 226 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 65 777666666666 3333333 333333 378899999999999999999987533 333355566666
Q ss_pred hc-CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----CChhHHHHHHhc---------
Q 037414 169 RD-RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT-----RDLVTWTVMIGA--------- 233 (577)
Q Consensus 169 ~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~i~~--------- 233 (577)
.. .++ +.+..++.. .+..+..+...+++.|.+.|+.++|.+++++++. ++..+|--.+..
T Consensus 227 ~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~ 301 (987)
T PRK09782 227 LAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQAL 301 (987)
T ss_pred HHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhc
Confidence 66 355 666666443 3346788899999999999999999999998863 222333222221
Q ss_pred --------------------------------------------------------------------------------
Q 037414 234 -------------------------------------------------------------------------------- 233 (577)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (577)
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q 381 (987)
T PRK09782 302 ANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQ 381 (987)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037414 234 -------------------------------------------------------------------------------- 233 (577)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (577)
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence
Q ss_pred ------CCC-Cc--chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC--------------------------------
Q 037414 234 ------NKF-LL--DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-------------------------------- 270 (577)
Q Consensus 234 ------~g~-~~--~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-------------------------------- 270 (577)
.+. ++ +...+..+..++.. |+.++|...|.+... |+
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 111 22 34445544444443 444445554443322 22
Q ss_pred -hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 271 -VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 271 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|...++..+ .+.|+...|..+.
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA 616 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARA 616 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHH
Confidence 2223333344444455555555554444432 1111122222223334466666666666665 2456667777777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 427 (577)
..+.+.|+.++|+..+++. ...|+ ...+..+...+...|+.++|+..++++++..|.++..+..+..+|...|++++|
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 7777888888888877776 44554 446666666777888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCC
Q 037414 428 AKIRDLMTRRR 438 (577)
Q Consensus 428 ~~~~~~m~~~g 438 (577)
...+++..+..
T Consensus 697 ~~~l~~Al~l~ 707 (987)
T PRK09782 697 QHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhcC
Confidence 88887776543
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=1.5e-14 Score=156.01 Aligned_cols=413 Identities=11% Similarity=0.031 Sum_probs=300.6
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKL 98 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 98 (577)
.+...-.-+....+.|+++.|++.|+..... .|...|-..-+..++...++.+.|...++..+... ..+.....++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHH
Confidence 3333334455678999999999999998765 22222223344445555566888988888887211 2233344444
Q ss_pred HHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 99 LYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
...|...|++++|.++|+++.+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 66888889999999999998763 4556777788899999999999999998874 566666644444444456666
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---Ch------------h---------------
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---DL------------V--------------- 225 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~------------~--------------- 225 (577)
+|.+.++++++.. |.+...+..++....+.|-...|.++..+-+.- .. +
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6999999999885 567888888999999999988888887765520 00 0
Q ss_pred -------HHHHHHhc-CCCCcchhh-HHH---HHHHHHhcCCHHHHHHHHHhccCC----ChhhHHHHHHHHHHcCChHH
Q 037414 226 -------TWTVMIGA-NKFLLDVIL-GTA---VIDMYAKCGSIDSAREIFDRMRQK----NVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 226 -------~~~~~i~~-~g~~~~~~~-~~~---Li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~ 289 (577)
-+..++.. ...++.... ..+ -+-++.+.|++.++.+.|+.+..+ ....--++.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 00111110 122322222 222 244567889999999999999842 23455678899999999999
Q ss_pred HHHHHHHhhhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC----------CCCC---HHHHHHHHHH
Q 037414 290 ALDLFPMMLSSR-----VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA----------VRPD---VKHYTCMVDL 351 (577)
Q Consensus 290 A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~ 351 (577)
|+.+|+++.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999987643 123344456788999999999999999999965211 0122 2445567788
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 352 LGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
+...|++.+|++.++++ ...| |...+..+...+...|.+.+|+..++.+...+|.+..+....+..+...|+|.+|.+
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 89999999999999998 3345 777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC
Q 037414 430 IRDLMTRRR 438 (577)
Q Consensus 430 ~~~~m~~~g 438 (577)
+.+.+.+..
T Consensus 506 ~~~~l~~~~ 514 (822)
T PRK14574 506 LTDDVISRS 514 (822)
T ss_pred HHHHHHhhC
Confidence 998776544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.74 E-value=4.5e-15 Score=159.93 Aligned_cols=360 Identities=9% Similarity=-0.042 Sum_probs=271.4
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHH---HHhccChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISS---LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLL 99 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~l---l~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 99 (577)
+...-..+...|++++|+..|...... .|+...|..+ ....++.+.|...+...++.. +.+...+..+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a 201 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC-------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 334556688899999999999998754 4555555444 333344889999999988875 55677888899
Q ss_pred HHHHcCCChHHHHHHHhcCCC---------------------------------CCcchHHHHHHHH-------------
Q 037414 100 YIYALHKALTDAHALFNGMKE---------------------------------RDSVSWSVMVGGF------------- 133 (577)
Q Consensus 100 ~~~~~~g~~~~A~~~f~~m~~---------------------------------~~~~~~~~li~~~------------- 133 (577)
.+|...|++++|..-|..... .+..++..+...+
T Consensus 202 ~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 202 NAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999999765533210 0111111111100
Q ss_pred -----------------------HhCCChhHHHHHHHHHHHCC-CCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 134 -----------------------SKVADFINCFETFREFIRCG-MQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 134 -----------------------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
...+++++|++.|+.....+ ..| +...+..+...+...|++++|...+++.++..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 11257889999999998765 334 34556777777888999999999999998864
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
+.....|..+...|...|++++|...|++..+.+ +.+..++..+...|...|++++|...|++..+
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-------------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID 427 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3446788899999999999999999999876533 23567888899999999999999999999865
Q ss_pred --C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH---
Q 037414 269 --K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV--- 342 (577)
Q Consensus 269 --~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--- 342 (577)
| +...|..+...+.+.|++++|+..|++.... .+-+...+..+...+...|++++|...|+..++ +.|+.
T Consensus 428 l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~ 503 (615)
T TIGR00990 428 LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPM 503 (615)
T ss_pred cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccc
Confidence 3 4567888889999999999999999998875 233467888889999999999999999999874 33321
Q ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 343 -----KHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 343 -----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..++.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|...++++.++.+...
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 11222223344579999999999986 555644 4788899999999999999999999998876543
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.69 E-value=2.3e-13 Score=149.59 Aligned_cols=332 Identities=11% Similarity=0.051 Sum_probs=248.5
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFV 164 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l 164 (577)
+.++....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|.++|++..+. .| +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 45666667778888899999999999998764 24445899999999999999999999999875 44 45566777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHH
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~ 244 (577)
...+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.+.++. +..++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-------------~~~~~~ 154 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-------------TQQYPT 154 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------CHHHHH
Confidence 788899999999999999999874 55666 888999999999999999999998753321 122222
Q ss_pred HHHHHHHhcCCH----------------------------------------------HHHHHHHHhccC-----CChh-
Q 037414 245 AVIDMYAKCGSI----------------------------------------------DSAREIFDRMRQ-----KNVI- 272 (577)
Q Consensus 245 ~Li~~~~~~g~~----------------------------------------------~~A~~~~~~~~~-----~~~~- 272 (577)
.+..++.+.|.. ++|.+.++.+.+ |+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 233333333332 455555555542 2211
Q ss_pred hHH----HHHHHHHHcCChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--CHHHH
Q 037414 273 SWS----AMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHY 345 (577)
Q Consensus 273 ~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~ 345 (577)
.+. ..+..+...|++++|+..|+++.+.+.+ |+.. -..+..+|...|++++|...|+.+.+.....+ .....
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~ 313 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEEL 313 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHH
Confidence 111 1133456779999999999999987632 4432 22256789999999999999999875321111 13456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CH---hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVEK-------------DE---GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..+..++...|++++|.++++++ ...| +. ..+..+...+...|+.++|+..++++.+..|.++
T Consensus 314 ~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~ 393 (765)
T PRK10049 314 ADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ 393 (765)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 66777889999999999999988 2223 21 2445666778899999999999999999999999
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+..++.++...|++++|++.+++..+..
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999887654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=1.7e-12 Score=140.34 Aligned_cols=358 Identities=11% Similarity=0.034 Sum_probs=262.5
Q ss_pred hHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHH-HH--HHHHHhC
Q 037414 62 FFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWS-VM--VGGFSKV 136 (577)
Q Consensus 62 ~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~-~l--i~~~~~~ 136 (577)
.|...+..... ...|...+.++++......+.++ .++..+...|+.++|+..+++...|+...+. .+ ...|...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 35555544444 88999999999877522213445 8899999999999999999999877544443 33 4477888
Q ss_pred CChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 137 ADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 137 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
|++++|+++|+++.+. .| |...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.
T Consensus 116 gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 9999999999999986 34 4566677778889999999999999999876 45555665565666556777679999
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCH---------------------------------------
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSI--------------------------------------- 256 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~--------------------------------------- 256 (577)
++++.+.++. +...+..++....+.|-.
T Consensus 192 ~ekll~~~P~-------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 192 SSEAVRLAPT-------------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred HHHHHHhCCC-------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998754321 222222223333333322
Q ss_pred ---------HHHHHHHHhccC-----CChh-hH----HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 257 ---------DSAREIFDRMRQ-----KNVI-SW----SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 257 ---------~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
+.|+.-++.+.. |... .| --.+-++...|+..++++.|+.|...|.+.-..+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 223333333322 2111 11 1235677889999999999999999886645557788999999
Q ss_pred ccCCHHHHHHHHHHhhHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC-C-------------CCHh---H
Q 037414 318 HTGLVEEGLRLFSSMWDDFA----VRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV-E-------------KDEG---L 376 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~-------------p~~~---~ 376 (577)
..+++++|..+++.+....+ ..++......|.-+|...+++++|..+++++.- . ||.. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999999976432 233455567889999999999999999998821 1 2222 3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...++..+.-.|+..+|++.++++....|.|+.....+..++...|.+.+|++.++.....
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3445666889999999999999999999999999999999999999999999999776543
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=6e-12 Score=138.87 Aligned_cols=344 Identities=10% Similarity=0.007 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC-C-----CcchHHHHHHHHHhCCC---hhHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-R-----DSVSWSVMVGGFSKVAD---FINCF 143 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~-----~~~~~~~li~~~~~~g~---~~~A~ 143 (577)
..++.+.+..+.+.. +-+....-.+--...+.|+.++|.++|..... + +...-+-++..|.+.+. ..+++
T Consensus 358 ~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 358 KAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred hhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 556666677776653 33555555555666778888888888887655 2 22234466677777665 33333
Q ss_pred HH----------------------HHHHHH-CCC-CC--CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 037414 144 ET----------------------FREFIR-CGM-QL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197 (577)
Q Consensus 144 ~~----------------------~~~m~~-~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 197 (577)
.+ ...... .+. ++ +...|..+..++.. ++.++|...+.+..... |+.....
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L 513 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHR 513 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHH
Confidence 33 111111 112 22 44556666666655 78888999888777663 5555444
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM 277 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 277 (577)
.+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...|++..+.++..++..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--------------~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~ 579 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--------------DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALY 579 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--------------CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHH
Confidence 5556667999999999999987542 23334456678889999999999999998876443333333
Q ss_pred ---HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHH
Q 037414 278 ---IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLG 353 (577)
Q Consensus 278 ---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~ 353 (577)
.......|++++|+..+++..+. .|+...+..+..++.+.|+.++|...++..++ ..|+ ...++.+...+.
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 33334559999999999999875 56788888999999999999999999999974 4554 677788888999
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
..|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|++..+.........+..+++.|.+.+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999987 5556 55689999999999999999999999999999999988888899999999999999888
Q ss_pred HHHhhCCC
Q 037414 432 DLMTRRRL 439 (577)
Q Consensus 432 ~~m~~~g~ 439 (577)
++--..++
T Consensus 735 ~r~~~~~~ 742 (987)
T PRK09782 735 GRRWTFSF 742 (987)
T ss_pred HHHhhcCc
Confidence 76655444
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=5.3e-12 Score=119.51 Aligned_cols=332 Identities=11% Similarity=0.054 Sum_probs=191.6
Q ss_pred hhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC----CCCcchHHHHHHHH
Q 037414 61 KFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK----ERDSVSWSVMVGGF 133 (577)
Q Consensus 61 ~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~ 133 (577)
.|+++++.+..+ .+.|++++..........+..++|.+|.+-.-.-+ .++..+|. .||..++|+++++.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 344444444433 44444444444444334455555555443221111 23333332 24555555555555
Q ss_pred HhCCChh----HHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHH-HHHHHHHHHHc----CC----CCcHHHHHHHH
Q 037414 134 SKVADFI----NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVM-GRLIHDIVLKS----GL----DIDQFVCAALV 200 (577)
Q Consensus 134 ~~~g~~~----~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----g~----~~~~~~~~~li 200 (577)
.+.|+++ .|++++.+|++-|+.|...+|..++..+.+.++..+ +..++.++... .+ +.|...+...+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 5555443 346777888888888888888888888877777644 33444444331 12 23456667777
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc---chhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhh
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL---DVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVIS 273 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~---~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~ 273 (577)
+.|....+.+-|.++-.-....+.. - -+.| ...-|..+....|....++.-..+|+.|.. |+..+
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~--~------~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNW--K------FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCch--h------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 8888888888888876655432211 0 1112 234566778888888899999999999874 77777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC-C--------HHH-----HHHHHHHh---h-Hh
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG-L--------VEE-----GLRLFSSM---W-DD 335 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-~--------~~~-----a~~~~~~m---~-~~ 335 (577)
..-++.+..-.|+++-.-+++..|+..|..-+...-..++.-+++.. . +.. |..+++.. . +.
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 77888888888998888888888888774444433333333333322 0 000 00111100 0 00
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
...+-.....++..-.+.|.|+.++|.+++.-+ +..|......-++....+.++...|..+++-+...+
T Consensus 516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 022334455666667777888888887777654 223333344455556666677777777777776554
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=4.8e-12 Score=130.50 Aligned_cols=330 Identities=14% Similarity=0.124 Sum_probs=253.0
Q ss_pred cCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcCCChHHHHH
Q 037414 104 LHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYTLPFVIRACRDRKDIVMGRL 179 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~ 179 (577)
-.|++++|.+++.++.. ++...|.+|...|-+.|+.++++..+-..-. +.| |...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 34999999999999865 3677899999999999999999888744444 444 66778888888899999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh-hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL-VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS 258 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~ 258 (577)
.|.++++.. |++....-.-+.+|-+.|+...|..-|.++.+.++ +.|-- ....--..+..|...++.+.
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er---------~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER---------IEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH---------HHHHHHHHHHHHHHhhHHHH
Confidence 999999986 67777777788999999999999999988876443 11111 11222335667778888899
Q ss_pred HHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC---------------------------CCCH
Q 037414 259 AREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV---------------------------LPNR 306 (577)
Q Consensus 259 A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------~p~~ 306 (577)
|.+.++.... -+...++.++..|.+...++.|......+..... .++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 9999888764 3445688999999999999999999888876222 2222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhCC---CCCCHhHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRLDEALKLIESMS---VEKDEGLWGALL 381 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll 381 (577)
..+ .+.-++.+....+...-+.....++ .+.| +...|.-+.++|...|++.+|.++|..+- ...+...|-.+.
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 221 2223344444444444444444433 4333 46788889999999999999999999982 223567999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeE
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 447 (577)
.++...|..++|.+.+++++...|.+..+-..|...|.+.|+.++|.+++..|..-+-...+++.|
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999999999887433333345555
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.56 E-value=6.1e-12 Score=130.58 Aligned_cols=368 Identities=15% Similarity=0.125 Sum_probs=265.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCC------cchHHHHHHHHHhCCChhHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERD------SVSWSVMVGGFSKVADFINCFETF 146 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 146 (577)
...|.+++...-... ..++.+.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445555555554443 5678889999999999999999998887765432 335777889999999999999999
Q ss_pred HHHHHCCCCCCcch--HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----CHHHHHHHHhhCC
Q 037414 147 REFIRCGMQLDSYT--LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDARQLFDQMP 220 (577)
Q Consensus 147 ~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 220 (577)
.+..+. .||.++ +.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..
T Consensus 331 ~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 777654 455544 4556777899999999999999998874 666788888888888775 5677777777766
Q ss_pred CCChhHHHHHHhc-------------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------
Q 037414 221 TRDLVTWTVMIGA-------------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ------- 268 (577)
Q Consensus 221 ~~~~~~~~~~i~~-------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~------- 268 (577)
++.++..++.|.- .+.++.+.+.|.+...+...|++++|...|.+...
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 5443322222211 55557788899999999999999999999987653
Q ss_pred CCh------hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC
Q 037414 269 KNV------ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD 341 (577)
Q Consensus 269 ~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 341 (577)
+|. .+-..+...+-..++.+.|.+.|...... .|.-+ .|..++..-...+...+|...+...+. ....+
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~n 563 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSN 563 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCC
Confidence 222 12223556666778899999999998875 45543 344444333445778888888888875 34455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCC
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGACRI------------HKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p 405 (577)
+..++.+...+.+...+..|.+-|+.+ ...+|..+.-+|.+.|.. .+..+.|+++|.++++.+|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 566666777888888888888755444 334677777667665542 2347889999999999999
Q ss_pred CCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEE
Q 037414 406 QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450 (577)
Q Consensus 406 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 450 (577)
.|..+-+-+.-+++..|++.+|..+|.+.++......+ .|+-+
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d--v~lNl 686 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED--VWLNL 686 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc--eeeeH
Confidence 99888888899999999999999999999887653222 46544
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=2.9e-14 Score=138.12 Aligned_cols=256 Identities=16% Similarity=0.155 Sum_probs=111.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 163 FVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
.+...+.+.|++++|.+++....... .+.|...|..+...+...++.+.|.+.++++...+.. +..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------~~~ 79 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------NPQ 79 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------ccc
Confidence 34555667778888887775444333 2345555666666777778888888888877664322 334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~ 318 (577)
.+..++.. ...+++++|.++++..-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45556666 677888888888776643 566677888888999999999999999977543 34566778888888999
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.|+.++|...++..++. .|+ ......++..+...|+.+++.++++.. ....|...|..+..++...|+.++|..
T Consensus 159 ~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 159 LGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp CCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 99999999999999853 564 777888999999999999988888776 123466688999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.+++..+.+|+|+.....++.++...|+.++|.+++.+.-
T Consensus 236 ~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 236 YLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999987653
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=4.5e-10 Score=106.63 Aligned_cols=372 Identities=13% Similarity=0.135 Sum_probs=200.1
Q ss_pred hHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCCCh-------------------------HHHH
Q 037414 62 FFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYA--LHKAL-------------------------TDAH 112 (577)
Q Consensus 62 ~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~-------------------------~~A~ 112 (577)
+=+++++-.+. +.++.-+++.|.+.|.+.+..+--.|...-+ ...++ +-|.
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 33444443333 7777778888887777777666555544322 11111 1122
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc
Q 037414 113 ALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID 192 (577)
Q Consensus 113 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 192 (577)
-+|+.. .++..+|..||.++|+--..++|.+++++-.....+.+..+||.++.+..- ..++++..+|+...+.||
T Consensus 198 L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 198 LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCc
Confidence 222222 235567777788877777777777777777666666667777777665322 223566667776667777
Q ss_pred HHHHHHHHHHHHhCCCHHHHHH----HHhhCCC----CChhHHHHHHhc------------------------C---CC-
Q 037414 193 QFVCAALVDMYAKCKVIDDARQ----LFDQMPT----RDLVTWTVMIGA------------------------N---KF- 236 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~----~~~~m~~----~~~~~~~~~i~~------------------------~---g~- 236 (577)
..|+|+++.+..+.|+++.|.+ ++.+|++ |...+|.-+|.- . ..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 7777777777777776665443 3334432 222222222111 1 11
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--------CC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--------KN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
+.|...+..-++.|....+.+-|.++-.-... ++ .+-|..+....++....+.....|+.|+-.-+-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 11233444455555566666666665544432 11 12344556666666677777777777776666677
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC-C--------HHH-----HHHHHH-----
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-R--------LDE-----ALKLIE----- 366 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~----- 366 (577)
..+...++.|....+.++-..++|..++ .+|..-....-.-+...+++.. + +.. |..+++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777777777777777776666666664 3343322222222223333222 0 000 111111
Q ss_pred --hC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCc--hhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 367 --SM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ---PQNP--GHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 367 --~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+| ...-.....+..+-.+.+.|..++|.+++..+.+.+ |..+ .+..-+.+.-........|...++-|...+
T Consensus 512 ~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 512 PIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 11 112233445555555677777777777777775443 3322 122344444555666777777777776555
Q ss_pred C
Q 037414 439 L 439 (577)
Q Consensus 439 ~ 439 (577)
.
T Consensus 592 ~ 592 (625)
T KOG4422|consen 592 L 592 (625)
T ss_pred c
Confidence 4
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=5.2e-11 Score=120.85 Aligned_cols=285 Identities=11% Similarity=0.012 Sum_probs=197.1
Q ss_pred CCChHHHHHHHhcCCCC--Ccch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHH--HHHHHHhcCCChHHHHH
Q 037414 105 HKALTDAHALFNGMKER--DSVS-WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLP--FVIRACRDRKDIVMGRL 179 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 179 (577)
.|+++.|++.+...++. ++.. |-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 59999999999877653 2333 333344558899999999999999874 56655443 33456788999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A 259 (577)
.++.+.+.. |.+..+...+...|.+.|++++|.+++..+.+....+-...- .....+|..++.......+.+..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~-----~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA-----MLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHHHHHHHHhcCHHHH
Confidence 999998876 667889999999999999999999999998764332100000 00002333444444455556666
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc
Q 037414 260 REIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336 (577)
Q Consensus 260 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 336 (577)
.++++.+++ .++.....+...+...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...++
T Consensus 249 ~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 249 KRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-
Confidence 666666653 45667777778888888888888888777763 4444221 233344557777777777777653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 337 AVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 337 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
.+-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2234555667777777778888888777776 55677777777777777777777777777777654
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=3.7e-11 Score=121.92 Aligned_cols=277 Identities=12% Similarity=0.057 Sum_probs=209.6
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhCCCHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVC--AALVDMYAKCKVIDDAR 213 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~ 213 (577)
.|++++|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998887765542111 222333344457899999999999999875 4554333 34477899999999999
Q ss_pred HHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHH
Q 037414 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV-----------ISWSAMIAAYG 282 (577)
Q Consensus 214 ~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~ 282 (577)
+.++++.+.++ .+..+...+...|.+.|++++|.+++..+.+... ..|..++....
T Consensus 174 ~~l~~~~~~~P-------------~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 174 HGVDKLLEVAP-------------RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999876432 3577888999999999999999999999875221 13344444444
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 362 (577)
...+.+...++++.+.+. .+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHH
Confidence 555666777777776543 455777888899999999999999999999875 34554322 233334569999999
Q ss_pred HHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 363 KLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 363 ~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+..++. ...|+. ..+..+...|...+++++|.+.|+++.+..|++ ..|..+..++.+.|+.++|.+++++-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887 445654 467788889999999999999999999999886 567899999999999999999997653
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.3e-10 Score=118.53 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=197.2
Q ss_pred cCCChHHHHHHHhcCCCC--Cc-chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhcCCChHHHH
Q 037414 104 LHKALTDAHALFNGMKER--DS-VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY--TLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 178 (577)
..|+++.|.+.+.+..+. +. ..+-.....+.+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 479999999999887653 22 23444456788889999999999998764 35553 3333466778899999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH---HHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT---WTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
..++.+.+.. |-+..+...+..+|...|++++|.+.+..+.+..+.. +..+ ....+..++..-.....
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l--------~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADL--------EQKAEIGLLDEAMADEG 244 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH--------HHHHHHHHHHHHHHhcC
Confidence 9999999886 5677889999999999999999999999987643211 0000 00112222222122223
Q ss_pred HHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHH--H-HHHHHHHhccCCHHHHHHHH
Q 037414 256 IDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT--F-VSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 256 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~-~~ll~a~~~~g~~~~a~~~~ 329 (577)
.+...+.++..++ .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3444555555543 47788888899999999999999999998875 344331 1 11112223456777788888
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES--M-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77765433333224556777788888888888888883 2 5578887777888888888888888888887654
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=9e-13 Score=127.70 Aligned_cols=254 Identities=17% Similarity=0.167 Sum_probs=97.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 037414 129 MVGGFSKVADFINCFETFREFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK 207 (577)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 207 (577)
+...+.+.|++++|++++++-.....+|+...| ..+...+...++.+.|.+.++++...+ +.+...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 355566777777777777554433223443333 334444556677788888888777665 2355566666666 6777
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc-----CCChhhHHHHHHHHH
Q 037414 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR-----QKNVISWSAMIAAYG 282 (577)
Q Consensus 208 ~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~ 282 (577)
++++|.+++.+.-+++ ++...+..++..|.+.|+++++..+++.+. +.+...|..+...+.
T Consensus 92 ~~~~A~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred cccccccccccccccc--------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 8888877776654322 234455566777788888888888877754 245667778888888
Q ss_pred HcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
+.|+.++|++.+++..+. .|+ ......++..+...|+.+++.+++....+. .+.+...+..+..+|...|+.++|
T Consensus 158 ~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccc
Confidence 888888888888888875 454 556777888888888888888888887654 245566777888888888888888
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 362 LKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 362 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
..+|++. ...| |......+..++...|+.++|..+.+++.+
T Consensus 234 l~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 234 LEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888887 3244 666777777888888888888888777654
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2e-11 Score=122.25 Aligned_cols=259 Identities=14% Similarity=0.033 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC------ChhHHHHHHhc--------------
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR------DLVTWTVMIGA-------------- 233 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~i~~-------------- 233 (577)
..+|...|..+.+. +.-+..+..-+..+|...+++++|+++|+.+... +...|.+.+--
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555553322 2334456666666777777777777777666432 22233322211
Q ss_pred -CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCH-HH
Q 037414 234 -NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR-IT 308 (577)
Q Consensus 234 -~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t 308 (577)
.--+..+.+|.++.++|.-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|.. -.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnA 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNA 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHH
Confidence 222335788999999999999999999999998763 5578888888888899999999999987643 3332 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
|-.+...|.+.++++.|+-.|+.++ .+.|. ......+...+-+.|+.|+|++++++. ..+| |+..--.-...+.
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 5567778999999999999999886 46665 455566777888999999999999988 3344 4433334455567
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+++++|...++++.+.-|++...|..++..|.+.|+.+.|..-|.-+.+..
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 78899999999999999999999999999999999999999998887776543
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=4.1e-10 Score=103.36 Aligned_cols=305 Identities=13% Similarity=0.137 Sum_probs=220.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHHhCCCHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDID--QFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~~A 212 (577)
+.++++|+++|-+|.+.. +-+..+-.+|-+.|.+.|..++|.++|+.+.++. .+-+ ....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 578999999999999842 1133444567778999999999999999988752 1111 34456677889999999999
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhh--------HHHHHHHHHHc
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS--------WSAMIAAYGYH 284 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~li~~~~~~ 284 (577)
+.+|..+.+.+...- ....-|+..|-+..+|++|.++-+++.+-+... |.-+...+...
T Consensus 127 E~~f~~L~de~efa~-------------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 127 EDIFNQLVDEGEFAE-------------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHHhcchhhhH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 999999887544433 344568999999999999999998876533333 44555566667
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
.+.+.|..++.+..+...+. ...-..+-......|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...+
T Consensus 194 ~~~d~A~~~l~kAlqa~~~c-vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQADKKC-VRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhCccc-eehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999988764222 222234566788899999999999999754 4333467788899999999999999999
Q ss_pred HHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH---hccCChhHHHHHHHHHhhCCCc
Q 037414 365 IESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY---ANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 365 ~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
+.++ ...++...-..+...-....-.+.|...+.+-+...|.-. .+..|+..- +..|++.+....+..|....++
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 9887 4455555555555555566667778888777777777754 444455443 2446688888899999888887
Q ss_pred cCCceeEEEECCEEEEE
Q 037414 441 KIPGWTWIEVENKIHQF 457 (577)
Q Consensus 441 ~~~~~s~~~~~~~~~~~ 457 (577)
..|.+..-..+-..|.|
T Consensus 351 ~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 351 RKPRYRCQNCGFTAHTL 367 (389)
T ss_pred hcCCceecccCCcceee
Confidence 77766555444444443
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.40 E-value=2.8e-10 Score=116.16 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=203.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCcch-HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 037414 134 SKVADFINCFETFREFIRCGMQLDSYT-LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 212 (577)
...|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+.+..+....++..+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4579999999999887764 455433 3344556778899999999999987764222234555568899999999999
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH----HHHHHHHcC
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSA----MIAAYGYHG 285 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~g 285 (577)
...++.+.+..+ .+..+...+...|...|++++|.+.+..+.+. +...+.. ...++...+
T Consensus 173 l~~l~~l~~~~P-------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 173 RHGVDKLLEMAP-------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999876432 25678889999999999999999999998752 3322321 112223333
Q ss_pred ChHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-HHHHHH--HHHcCCHH
Q 037414 286 QGKKALDLFPMMLSSRV---LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TCMVDL--LGRAGRLD 359 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~--~~~~g~~~ 359 (577)
..+++.+.+..+..... +.+...+..+...+...|+.++|.+++++.+++ .|+.... ..++.. ....++.+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChH
Confidence 33334445555554321 237778888889999999999999999999864 3443311 012222 23457788
Q ss_pred HHHHHHHhC-CCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 360 EALKLIESM-SVEKDE---GLWGALLGACRIHKNVDLAEMAAKS--LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 360 ~A~~~~~~m-~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
.+.+.+++. ...|+. ....++...+.+.|++++|.+.|++ ..+..|++ ..+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888776 334533 5667888899999999999999994 66667765 4577999999999999999999986
Q ss_pred Hh
Q 037414 434 MT 435 (577)
Q Consensus 434 m~ 435 (577)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.8e-10 Score=109.91 Aligned_cols=276 Identities=14% Similarity=0.158 Sum_probs=210.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHH--HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPF--VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 208 (577)
..|.++|+++.|++++.-+.+..-+.-...-+. .+......+++..|.+.-+..+... .-+....+.--+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 357889999999999988876533322222222 2333334556777777776665432 2233333333344556799
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHHcC
Q 037414 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR---QKNVISWSAMIAAYGYHG 285 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 285 (577)
+++|.+.+.+....|.....+ .|| +.-.+-+.|++++|+..|-++. ..++.....+.+.|-...
T Consensus 506 ~dka~~~ykeal~ndasc~ea------------lfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEA------------LFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHH------------HHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 999999999988876554222 222 3445778999999999998875 367777788889999999
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
++.+|++++.+.... ++-|+....-|...|-+.|+-.+|.+.+-.--+ -++-+.++..-|..-|....-+++|...|
T Consensus 573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999877654 566777888899999999999999998765532 34557888888888899999999999999
Q ss_pred HhC-CCCCCHhHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 366 ESM-SVEKDEGLWGALLGAC-RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 366 ~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
++. -++|+..-|..++..| ++.|++..|..+++...+..|.+......|++.+...|.
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 998 5789999999998775 778999999999999999999999999999999988874
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=5.7e-09 Score=104.27 Aligned_cols=379 Identities=14% Similarity=0.098 Sum_probs=278.0
Q ss_pred CChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 037414 58 VDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFS 134 (577)
Q Consensus 58 p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 134 (577)
|+++.+-.........+.|+.++...++.- +.+...|.+ |++..-++.|.+++++..+ .+...|-+-...=-
T Consensus 377 P~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE 451 (913)
T KOG0495|consen 377 PRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEE 451 (913)
T ss_pred CchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Confidence 444444443333444666777777776653 445555554 4555667888888887655 37777877777677
Q ss_pred hCCChhHHHHHHHH----HHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhCCC
Q 037414 135 KVADFINCFETFRE----FIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID--QFVCAALVDMYAKCKV 208 (577)
Q Consensus 135 ~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~ 208 (577)
.+|+.+...++..+ +...|+..+..-|..=..+|-..|..-....+....+..|++.. ..+|+.-.+.|.+.+.
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 78888887777654 34567777777777777777777777777777777777775432 4577777777888888
Q ss_pred HHHHHHHHhhCCCC---ChhHHHHHHhc------------------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 209 IDDARQLFDQMPTR---DLVTWTVMIGA------------------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 209 ~~~A~~~~~~m~~~---~~~~~~~~i~~------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
++-|+.+|....+- +...|...... ...+.....|-.....+...|++..|+.++.+.-
T Consensus 532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af 611 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF 611 (913)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 88887777665431 22334322221 3344456667777778888999999999998876
Q ss_pred C---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HH
Q 037414 268 Q---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VK 343 (577)
Q Consensus 268 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 343 (577)
+ .+...|-+-+.....+.+++.|..+|.+... ..|+...|.--+..-.-.++.++|.+++++.++. -|+ ..
T Consensus 612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~K 686 (913)
T KOG0495|consen 612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS---FPDFHK 686 (913)
T ss_pred HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHH
Confidence 5 3456788888999999999999999999876 4677777766666666679999999999999864 344 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.|-.+.+.+-+.++++.|.+.|..- ..-|+. ..|-.|...-.+.|++-.|..++++..-.+|.+...|...+.+-.+.
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc
Confidence 7777888899999999999988765 445654 48888888888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCccCCceeEE
Q 037414 422 GRWQDVAKIRDLMTRRRLKKIPGWTWI 448 (577)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~s~~ 448 (577)
|+.+.|..+..+..+.- |..|.-|.
T Consensus 767 gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred CCHHHHHHHHHHHHHhC--CccchhHH
Confidence 99999998877665432 23344453
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.9e-10 Score=106.60 Aligned_cols=257 Identities=12% Similarity=0.133 Sum_probs=202.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhH
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~ 243 (577)
+..++......+++.+-.......|++.....-+-...++-...++|+|+.+|+++.+.|+.-. .|..+|
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------~dmdly 302 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------DDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc----------hhHHHH
Confidence 3445666667788888888888889888877777777778888999999999999988776532 255666
Q ss_pred HHHHHHHHhcCCHH-HHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCC
Q 037414 244 TAVIDMYAKCGSID-SAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGL 321 (577)
Q Consensus 244 ~~Li~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 321 (577)
+.++-.--++.++. -|..+++ +-+--+.|...+.+.|+-.++.++|...|++.++.+ |. ...++.+.+-|....+
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKN 379 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKN 379 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcc
Confidence 66653332222222 2222222 223334567778888999999999999999998753 33 4567777788999999
Q ss_pred HHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
...|.+-++..++ +.| |-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|+..|.
T Consensus 380 t~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 380 THAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred cHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999974 444 6788999999999999999999999998 5667 67799999999999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 399 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++...+..+...|..|.++|.+.++.++|.+.++.-.+
T Consensus 457 rai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 457 RAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999887888999999999999999999999987664
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=8.6e-11 Score=117.84 Aligned_cols=280 Identities=15% Similarity=0.089 Sum_probs=216.5
Q ss_pred ChHHHHHHHhcCCCC--Ccc-hHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCCcchHHHHHHHHhcCCChHHHHHHH
Q 037414 107 ALTDAHALFNGMKER--DSV-SWSVMVGGFSKVADFINCFETFREFIRCG--MQLDSYTLPFVIRACRDRKDIVMGRLIH 181 (577)
Q Consensus 107 ~~~~A~~~f~~m~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 181 (577)
+..+|...|...++. |+- .-.-+..+|...+++++|.++|+...+.. -.-+...|.+.+--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467899999987653 333 33456788999999999999999998742 112567788877654321 122222
Q ss_pred -HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHH
Q 037414 182 -DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR 260 (577)
Q Consensus 182 -~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 260 (577)
+.+++.. +..+.+|.++.++|.-.++.+.|.+.|++..+-|+. ...+|+.+..-+.....+|.|.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-------------faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-------------FAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-------------cchhhhhcCChhhhhHHHHhHH
Confidence 2333332 556889999999999999999999999998875531 5678888888899999999999
Q ss_pred HHHHhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC
Q 037414 261 EIFDRMRQKNVISWSA---MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA 337 (577)
Q Consensus 261 ~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 337 (577)
..|+.....|+..||+ +...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|.++++++. .
T Consensus 476 ~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ 551 (638)
T KOG1126|consen 476 KSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAI---H 551 (638)
T ss_pred HHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---h
Confidence 9999999888877666 5678999999999999999998753 2345556667778888999999999999987 3
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 338 VRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 338 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+.|. +..---.+..+...++.++|+..++++ .+.|+. ..+..+...|.+.|+.+.|+.-|.-+.+++|+-.
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 4443 333334456677889999999999999 456755 4777788889999999999999999999998743
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.7e-10 Score=109.06 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=148.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHh
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACS 317 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~ 317 (577)
.|--+..+|....+-++..+.|++..+ .|..+|.--...+.-.+++++|..=|++.+.. .| +...|.-+..+.-
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHH
Confidence 366666777888888888888877654 34456666666666677888999999888764 34 4557777777778
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---------HhHHHHHHHHHHhc
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD---------EGLWGALLGACRIH 387 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---------~~~~~~ll~~~~~~ 387 (577)
+.+.++++...|++..++ ++..+++|+.....+...+++++|.+.|+.. .++|+ +.+-.+++..-- .
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-K 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-h
Confidence 889999999999999764 6666889999999999999999999999876 44443 222233333322 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+++..|+++++++.+.+|....+|..|...-.+.|+.++|.++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998754
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.34 E-value=5.7e-10 Score=116.26 Aligned_cols=407 Identities=13% Similarity=0.076 Sum_probs=282.3
Q ss_pred HhhccCCCCCCCCCcccCccCCCCCCCCCCCChhh-HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037414 28 IALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF-FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106 (577)
Q Consensus 28 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~-~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 106 (577)
......|++..|+.+|...... +|...||+.. ..-.+.-|...+.|+..|....+.. +.++.++-.|--.-....
T Consensus 172 ~i~ynkkdY~~al~yyk~al~i---np~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~ 247 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRI---NPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFN 247 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhc---CcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHcc
Confidence 3355677888999998886655 4456677643 2334455666888888888887654 233333333322222222
Q ss_pred ---ChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CCcchHHHHHHHHhcCCChHHHH
Q 037414 107 ---ALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ--LDSYTLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 107 ---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~ 178 (577)
.+..+..++...-. .|++..+.|..-|.-.|++..++.+...+...... .-...|-.+.+++-..|+++.|.
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~ 327 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAF 327 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHH
Confidence 34455555554432 48888999999999999999999999888775311 12345777888888999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC----
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG---- 254 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g---- 254 (577)
+.|.+..+..-..-+..+-.|..+|.+.|+++.|...|+.+.... +.+..+...|...|+..+
T Consensus 328 ~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-------------p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 328 KYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-------------PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-------------cchHHHHHHHHhHHHhhhhhhH
Confidence 999887766422113445568899999999999999999886532 234566677788887765
Q ss_pred CHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHhh----hCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 255 SIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPMML----SSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 255 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
..+.|..+..+..++ |...|-.+...+-+ +++..++..|.... ..+-.+.....|.+.......|++++|..
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 567777777777653 45567666666654 44445576666543 44555777889999999999999999999
Q ss_pred HHHHhhHhcC--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHH
Q 037414 328 LFSSMWDDFA--VRPDV------KHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 328 ~~~~m~~~~~--~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
.|........ ..++. .+---+...+-..++.+.|.+.|..+ ...|.-+ .|--++......++..+|...+
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 9998864311 12222 11223344555677899999999988 3355543 5555554556668899999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECC
Q 037414 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVEN 452 (577)
Q Consensus 398 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~ 452 (577)
+.++..+..+|..+..+.+.|.+...|..|.+-|....++-......++.+.+++
T Consensus 554 k~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 554 KDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred HHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhH
Confidence 9999999999999999999999999999999988877766555544566666665
No 44
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.34 E-value=1e-08 Score=102.53 Aligned_cols=365 Identities=13% Similarity=0.090 Sum_probs=250.7
Q ss_pred hHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHh
Q 037414 62 FFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSK 135 (577)
Q Consensus 62 ~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 135 (577)
|+...-+.|.+ ++.++.||...++- ++.+..+|...+..=-..|..++-..+|.+... .....|-.....+..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 44444444444 66666777766654 355566666666655566666766666666543 244456666666666
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
.|+...|..++...-+... -+...|...+..-.....+++|+.++.+.... .|+..+|.--+..---.|..++|.++
T Consensus 597 agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 7777777777766666421 14455666666666777777777777766543 45666666666665566777777777
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHH
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALD 292 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 292 (577)
+++..+. ++.-...|-.+...+-+.++++.|...|..-.+ |+ +..|-.+...--+.|++-.|..
T Consensus 674 lEe~lk~-------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 674 LEEALKS-------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHHHHh-------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 7665432 222345667777777777788887777776554 33 3457666666667778888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 037414 293 LFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372 (577)
Q Consensus 293 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 372 (577)
+|++....+ +-|...|...|..=.+.|+.+.|..+..+.+++ ++.+...|..-|.+..+.++-..+.+.+++.. .
T Consensus 741 ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~ 815 (913)
T KOG0495|consen 741 ILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--H 815 (913)
T ss_pred HHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence 888776654 345667777777778888888888887777764 45566677777777777777666666666553 4
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEE
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 450 (577)
|..+.-++...+-...+++.|...|.+..+.+|++..+|..+...+.+.|.-++-.+++....... |.-|..|..+
T Consensus 816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 566666777778888899999999999999999999999999999999999999999998876543 4456677655
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=5.1e-10 Score=105.01 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=165.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
....+..+...|...|++++|...|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 356778889999999999999999998764 346678888999999999999999999998764 3355677778889
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 393 (577)
+...|++++|.+.++...+..........+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999754222334566777888999999999999999887 3344 456788888999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+++..+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998888888888999999999999999999887764
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.8e-08 Score=94.91 Aligned_cols=283 Identities=11% Similarity=0.132 Sum_probs=213.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHhCCCH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL--DIDQFVCAALVDMYAKCKVI 209 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~ 209 (577)
++-...+.++++.-.......|..-+...-+....+.-...++++|..+|+++.+... -.|..+|+.++-.--.+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444445666777677777776654444333344445677899999999999998742 12567777765433322222
Q ss_pred H-HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcC
Q 037414 210 D-DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHG 285 (577)
Q Consensus 210 ~-~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 285 (577)
. -|..+++-=+ + -+.|...+.+-|+-.++.++|...|++..+- ....|+.|..-|....
T Consensus 316 s~LA~~v~~idK---------------y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK 378 (559)
T KOG1155|consen 316 SYLAQNVSNIDK---------------Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK 378 (559)
T ss_pred HHHHHHHHHhcc---------------C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc
Confidence 2 2333332211 1 2345667788999999999999999998763 3567999999999999
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
+...|++-++..++-. +-|-..|-.|..+|.-.+...-|.-+|++.. .++| |...|.+|.+.|.+.+++++|.+.
T Consensus 379 Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999863 5577899999999999999999999999986 4566 588999999999999999999999
Q ss_pred HHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 365 IESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER-------QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 365 ~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
|.+. .-+.+...+..|...+.+.++.++|...+++-++. +|....+-..|..-+.+.+++++|........
T Consensus 455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9988 22345578999999999999999999999988763 23334455568888999999999988765543
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=6.9e-09 Score=98.40 Aligned_cols=287 Identities=11% Similarity=0.022 Sum_probs=217.8
Q ss_pred CCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHH
Q 037414 105 HKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIH 181 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 181 (577)
.|++..|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 59999999999876543 344566666778889999999999999887533344445555566688899999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Q 037414 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE 261 (577)
Q Consensus 182 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 261 (577)
.++.+.+ +-+..+......+|.+.|++.....+..++.+....+-.-+. .....+|+.+++-....+..+.-..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----RLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----HHHHHHHHHHHHHHhccccchHHHH
Confidence 9888876 667889999999999999999999999999875443211110 1134466677776666666666666
Q ss_pred HHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC
Q 037414 262 IFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 262 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 338 (577)
.++..++ .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+.-.+.++.
T Consensus 251 ~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 251 WWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 7777763 456667778888889999999999999888887777632 233566777777777777777766565
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
.| ..+.+|...|.+.+.|.+|.+.|+.. +.+|+..+|+-+..++.+.|+.++|.+..++.+-+
T Consensus 327 ~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred Ch--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55 66778888888888899988888876 67788888888888888888888888888887644
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=6.4e-12 Score=85.95 Aligned_cols=50 Identities=24% Similarity=0.446 Sum_probs=46.8
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.29 E-value=8.9e-11 Score=120.67 Aligned_cols=270 Identities=14% Similarity=0.148 Sum_probs=170.0
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A 259 (577)
++..+...|+.|+..||..||.-||..|+++.|- +|.-|.-++. +.+..+++.++......++.+.+
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL------------pv~e~vf~~lv~sh~~And~Enp 78 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL------------PVREGVFRGLVASHKEANDAENP 78 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc------------cccchhHHHHHhcccccccccCC
Confidence 4455666677777777777777777777777666 6666665432 33556666677766666666655
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
. +|...+|+.+..+|.++||..- ++..++ -...+...++..|....-..++..+.-..+.-
T Consensus 79 k-------ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~l 139 (1088)
T KOG4318|consen 79 K-------EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSL 139 (1088)
T ss_pred C-------CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccc
Confidence 4 5666778888888888887654 222222 11223344455555555555555442222344
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK-NVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
||.. ..+..+.-.|.++.+.+++..+|...-......+++-+.... .+++-....+...+ ..++.+|..++..-
T Consensus 140 pda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~a 214 (1088)
T KOG4318|consen 140 PDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRA 214 (1088)
T ss_pred hhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHH
Confidence 4543 344445566778888888888753321112222344443332 33444444444444 45678999999999
Q ss_pred hccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCcccCCCccccccc
Q 037414 419 ANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGYIPDTNFELHDVD 498 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~ 498 (577)
..+|+.+-|..++.+|+++|+...+.+.|..+.+ ... ...++.+.+-|++.|+.|++.+....+.
T Consensus 215 laag~~d~Ak~ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 215 LAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 9999999999999999999999999999987633 111 1234467889999999999988665554
Q ss_pred hhh
Q 037414 499 EEV 501 (577)
Q Consensus 499 ~~~ 501 (577)
++-
T Consensus 280 p~l 282 (1088)
T KOG4318|consen 280 PQL 282 (1088)
T ss_pred hhh
Confidence 443
No 50
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6.5e-10 Score=106.14 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=167.6
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHH---------Hh-c---------CCCCcchhhHHHH-----HHHHHhcCCHH
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVM---------IG-A---------NKFLLDVILGTAV-----IDMYAKCGSID 257 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---------i~-~---------~g~~~~~~~~~~L-----i~~~~~~g~~~ 257 (577)
-|.+.|+++.|.+++.-..++|..+-++. +. | ..+..+..-||.- .+.-...|+++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHH
Confidence 46788899988888776665543322111 11 1 1112222222221 12233578999
Q ss_pred HHHHHHHhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 258 SAREIFDRMRQKNVISWSAM---IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 258 ~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+|.+.|.+....|...-.++ .-.+-..|+.++|++.|-++..- +.-+......+...|....+..+|++++.+...
T Consensus 508 ka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 508 KAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 99999999988776543333 33466789999999999887653 344566777788889889999999999988742
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
-++.|+...+-|.+.|-+.|+-.+|.+..-.- ..-| |..+..-|...|....-+++++..|+++.-..|+......
T Consensus 587 --lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 587 --LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred --cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 34556888999999999999999999875443 3334 5666666777888888899999999999888888766566
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhC
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.+..++.+.|++.+|..+++...++
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh
Confidence 6667788999999999999998764
No 51
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=7.6e-12 Score=85.59 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.24 E-value=8.4e-09 Score=104.68 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=165.4
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHc-----CC-CCcH-HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKS-----GL-DIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 158 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
..+...+...|...|+++.|..++++.++. |. .|.+ ...+.+...|...+++++|..+|+++..--..+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~---- 274 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV---- 274 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh----
Confidence 346667888899999999999999987765 21 2232 333457778999999999999998775310000
Q ss_pred HhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH-H
Q 037414 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI-T 308 (577)
Q Consensus 231 i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t 308 (577)
.|...+--..+++.|...|.+.|++++|...++. |++++++ ..| ..|... -
T Consensus 275 -~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~------------------------Al~I~~~--~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 275 -FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER------------------------ALEIYEK--LLGASHPEVAAQ 327 (508)
T ss_pred -cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH------------------------HHHHHHH--hhccChHHHHHH
Confidence 0000111234566677777888888777766543 3333333 111 122222 3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFA--VRP----DVKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKD 373 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~ 373 (577)
++.+...|...+.+++|..+++...+.+. +.+ ...+++.|...|...|++++|++++++. +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 44555667777777777777776654332 112 1467888889999999999999988876 11222
Q ss_pred -HhHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---CchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 374 -EGLWGALLGACRIHKNVDLAEMAAKSLLE----RQPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 374 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
...++.|...|.+.++.++|.++|.+... .+|+ ...+|..|+..|.+.|++++|.++.+...
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33677788889999999989888887643 3444 44678899999999999999999988775
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=8e-09 Score=95.07 Aligned_cols=283 Identities=13% Similarity=0.122 Sum_probs=206.5
Q ss_pred CCChHHHHHHHhcCCCCCcchH---HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc------hHHHHHHHHhcCCChH
Q 037414 105 HKALTDAHALFNGMKERDSVSW---SVMVGGFSKVADFINCFETFREFIRCGMQLDSY------TLPFVIRACRDRKDIV 175 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~ 175 (577)
..+.++|..+|-+|.+-|..++ -+|.+.|-+.|..++|+.+-+.+.++ ||.. ..-.|..-|-..|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4678999999999987665554 46778889999999999999988875 4422 2334455577889999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
.|+.+|..+.+.| .--.....-|+..|-+..++++|.++-+++..-+.-.++.-| ...|.-|...+....+
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------AqfyCELAq~~~~~~~ 195 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------AQFYCELAQQALASSD 195 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------HHHHHHHHHHHhhhhh
Confidence 9999999988755 334567788999999999999999988877654433333322 2456677777778889
Q ss_pred HHHHHHHHHhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 256 IDSAREIFDRMRQKN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
++.|..++.+..+.| +..--.+...+...|++++|.+.++...+.+..--..+...|..+|.+.|+.+++...+..+
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999887533 33344456788899999999999999998865555667888999999999999999999988
Q ss_pred hHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHhHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 037414 333 WDDFAVRPDVKHYTCMVDLLGRAGRLDEALK-LIESMSVEKDEGLWGALLGACRIH---KNVDLAEMAAKSLLE 402 (577)
Q Consensus 333 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 402 (577)
.+. .++...-..+.+.-....-.+.|.. +.+.+..+|+...+..|+..-... |...+....++.|..
T Consensus 276 ~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 276 MET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 653 3444444455554444444555554 455567789999999999875433 334555555666654
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.21 E-value=3.5e-09 Score=109.24 Aligned_cols=246 Identities=13% Similarity=0.087 Sum_probs=137.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 037414 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER----DSVSWSVMVGGFSKVADFINCFETFREFIRCG 153 (577)
Q Consensus 78 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 153 (577)
.++..+...|+.|+.++|.+||.-|+..|+.+.|- +|.-|.-+ +...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35666778899999999999999999999999888 88877654 4556888888888888776665
Q ss_pred CCCCcchHHHHHHHHhcCCChHH---HHHHHHHHHH----cCCC-Cc-------------HHHHHHHHHHHHhCCCHHHH
Q 037414 154 MQLDSYTLPFVIRACRDRKDIVM---GRLIHDIVLK----SGLD-ID-------------QFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 154 ~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~----~g~~-~~-------------~~~~~~li~~~~~~g~~~~A 212 (577)
.|...||+.|+.+|+..||+.. .++.+..+.. .|+- +. ..-...++....-.|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788889999999999888654 2332222221 1211 00 11112334445556777777
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHH-hcCCHHHHHHHHHhccC-CChhhHHHHHHHHHHcCChHHH
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA-KCGSIDSAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKA 290 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 290 (577)
.+++..++... |+. |..+ .++-.. ....+++-...-....+ ++..+|.+.+..-..+|+.+.|
T Consensus 159 lkll~~~Pvsa---~~~--------p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 159 LKLLAKVPVSA---WNA--------PFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHhhCCccc---ccc--------hHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 77777766311 100 0000 011111 11112222222222222 5555555555555555555555
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
..++.+|.+.|++.+..-|-.|+-+ .++..-+..++..|. ..|+.|+.+|+...+-.+..
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhc
Confidence 5555555555555555555444433 444445555555553 23555555555544444433
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.19 E-value=1.1e-07 Score=99.02 Aligned_cols=361 Identities=11% Similarity=0.092 Sum_probs=262.6
Q ss_pred HHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC---CCCCcchHHHHHHHHHhCCChh
Q 037414 64 ISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM---KERDSVSWSVMVGGFSKVADFI 140 (577)
Q Consensus 64 ~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~ 140 (577)
+..+-+.++.+.|..++..+++.. +.+...|-.|...|-..|+.+++...+-.. ...|..-|-.+..-..+.|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 334555566999999999999987 678889999999999999999998876543 3347788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhCCCHHHHHHHH
Q 037414 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA----ALVDMYAKCKVIDDARQLF 216 (577)
Q Consensus 141 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~ 216 (577)
+|.-.|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-.. ..+..|...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999863 3354445555667889999999999999999875433433333 3455667777778888888
Q ss_pred hhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----C----------------------C
Q 037414 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----K----------------------N 270 (577)
Q Consensus 217 ~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~----------------------~ 270 (577)
+..... .+-.-+...++.++..|.+...++.|......+.. + +
T Consensus 304 e~~~s~-----------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 304 EGALSK-----------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred HHHHhh-----------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 776541 11123556778899999999999988877765532 1 1
Q ss_pred hhhHHH----HHHHHHHcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHH
Q 037414 271 VISWSA----MIAAYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344 (577)
Q Consensus 271 ~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 344 (577)
..+|.. +.-++......+....+........+ .-+...|.-+..++...|.+.+|..+|..+... ...-+...
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFV 451 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhh
Confidence 112221 22233344444444444555555553 334567888999999999999999999999754 22334778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CCCchhHHH
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQ---------PQNPGHYVL 413 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------p~~~~~~~~ 413 (577)
|--+..+|...|..++|.+.|+.. ...|+. ..--+|-..+.+.|+.++|.+.++.+.--+ +++......
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 999999999999999999999988 556643 355566677899999999999998876322 222344566
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
....|...|+.++=..+-..|....
T Consensus 532 r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 7788899999998777777776544
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=4.5e-09 Score=111.49 Aligned_cols=258 Identities=14% Similarity=0.046 Sum_probs=184.5
Q ss_pred CcchHHHHHHHHh-----cCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---------hCCCHHHHHHHHhhCCCC
Q 037414 157 DSYTLPFVIRACR-----DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYA---------KCKVIDDARQLFDQMPTR 222 (577)
Q Consensus 157 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~ 222 (577)
+...|...+.+-. ..+++++|.+.+++.++.. |.+...+..+..+|. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4445556666532 1245678999999998874 334566666666554 234588999999988765
Q ss_pred ChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 223 DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 223 ~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
++ .+...+..+...+...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+
T Consensus 334 dP-------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 334 DH-------------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred CC-------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 43 2567788888999999999999999999865 4 356788889999999999999999999988
Q ss_pred CCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-
Q 037414 300 SRVLPNR-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG- 375 (577)
Q Consensus 300 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~- 375 (577)
.. |+. ..+..++..+...|++++|...++++.+. ..| +...+..+...|...|++++|...++++ +..|+..
T Consensus 401 l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 401 LD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLI 476 (553)
T ss_pred cC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHH
Confidence 64 432 23333444566689999999999988653 234 3455677888899999999999999987 4445444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQ---PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++.+...+...| +.|...++.+.+.. |.++. .+...|.-.|+.+.+... +++.+.|
T Consensus 477 ~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 477 AVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4555555667666 47888788777653 44433 366667777787777766 7777654
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.19 E-value=1.9e-08 Score=95.41 Aligned_cols=277 Identities=13% Similarity=0.099 Sum_probs=210.3
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
.|+|.+|.++..+-.+.+-.| ...|..-..+....|+.+.+-+.+.++-+..-.++..++-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 699999999999877765443 2345555666788999999999999998874467788888888999999999999988
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHHHc
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV-----------ISWSAMIAAYGYH 284 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~ 284 (577)
.+++.+.. +.++.+......+|.+.|++.....+...+.+... .+|+.++.-....
T Consensus 176 v~~ll~~~-------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 176 VDQLLEMT-------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HHHHHHhC-------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 87776532 23677888999999999999999999999986322 3577676665555
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
+..+.-...+++.... .+-++..-.+++.-+.+.|+.++|.++..+..++ +..|+.. .++ ...+-++...-.+.
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~~~-~~l~~~d~~~l~k~ 316 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---RLI-PRLRPGDPEPLIKA 316 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---HHH-hhcCCCCchHHHHH
Confidence 5555555566655443 4555556667788888999999999999998876 6666621 122 23344554444444
Q ss_pred H----HhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 365 I----ESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 365 ~----~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
. ...+..| ..+.+|...|.+++.+.+|...|+..++..|.. ..|..+..++.+.|+.++|.+.+++-.
T Consensus 317 ~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 317 AEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3 3334344 678899999999999999999999999888874 689999999999999999999998765
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.1e-07 Score=91.79 Aligned_cols=357 Identities=13% Similarity=0.118 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RD-SVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
.+.|+.||+..+... ..+...|-.-+.+=.++..+..|+.+|++... |- -..|--.+-.=-..|+...|.++|++-
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 667888888877765 55677777778888888888888888887543 21 112433333334457778888888777
Q ss_pred HHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhH
Q 037414 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT---RDLVT 226 (577)
Q Consensus 150 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~ 226 (577)
.+ ..|+...|.+.++.=.+-+.++.|+.++++.+-. .|++..|--....-.++|....|..+|+...+ .+-..
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 65 4678888888888777777888888888777653 47777777777777778887777777766532 11100
Q ss_pred ---HHHHHhc------------------CCCCcc--hhhHHHHHHHHHhcCCHHHHHHH--------HHhccCC---Chh
Q 037414 227 ---WTVMIGA------------------NKFLLD--VILGTAVIDMYAKCGSIDSAREI--------FDRMRQK---NVI 272 (577)
Q Consensus 227 ---~~~~i~~------------------~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~--------~~~~~~~---~~~ 272 (577)
+.+...- ..++.+ ..+|..+...=-+-|+...-..+ ++.+... |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 0000000 011111 12222222222222222111111 1111111 222
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHH---hccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI-------TFVSLLYAC---SHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+++.+.++++..++ -++...
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 3444444444556666666666666543 444211 111111111 223455555555555542 122222
Q ss_pred HHHHHHHHH----HHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 343 KHYTCMVDL----LGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 343 ~~~~~li~~----~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.|+.-+=-+ -.++.++..|.+++... |.-|-..++...|..-.+.++++....++++.++-+|.+..+|.-....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 333322222 22455555555555444 5455555555555555555555555555555555555555555555555
Q ss_pred HhccCChhHHHHHHHHHhhC
Q 037414 418 YANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~ 437 (577)
-...|+++.|..+|....+.
T Consensus 481 E~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcC
Confidence 55555555555555554443
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.15 E-value=9.8e-09 Score=96.20 Aligned_cols=196 Identities=13% Similarity=0.020 Sum_probs=114.4
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666677777777777777777776542 2234455666666777777777777777776654 3445566667777
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIA 279 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 279 (577)
|...|++++|.+.|++...... .+.....+..+...|...|++++|...|++..+ .+...|..+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL-----------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc-----------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 7777777777777776543210 011223444455556666666666666665543 22344555555
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
.+...|++++|...+++.... .+.+...+..+...+...|+.++|..+.+.+
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666666666665544 2233344444445555555666655555544
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=9.9e-08 Score=92.21 Aligned_cols=368 Identities=12% Similarity=0.143 Sum_probs=264.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMK--ERDSVSWSVMVGGFSKVADFINCFETFREFI 150 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 150 (577)
+..|+.+++..+..- +.--..|-..+.+=-..|++..|+++|++-. +|+...|++.|.-=.+-...+.|..++++..
T Consensus 123 vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV 201 (677)
T KOG1915|consen 123 VNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV 201 (677)
T ss_pred HhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 778888888887653 3333455555666667788889999988754 4788889998888888888888888888887
Q ss_pred HCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc-CC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhh----CCCCCh
Q 037414 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GL-DIDQFVCAALVDMYAKCKVIDDARQLFDQ----MPTRDL 224 (577)
Q Consensus 151 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~ 224 (577)
- +.|+..+|.-....=-+.|....+++++...++. |- ..+...+.+....-.++..++.|.-+|.- +++...
T Consensus 202 ~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra 279 (677)
T KOG1915|consen 202 L--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA 279 (677)
T ss_pred e--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH
Confidence 6 4688888887777777888888888888877764 11 11234445555555566677777776643 332110
Q ss_pred -----------------hHHHHHHhc----------CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChh---
Q 037414 225 -----------------VTWTVMIGA----------NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVI--- 272 (577)
Q Consensus 225 -----------------~~~~~~i~~----------~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~--- 272 (577)
..-...|.+ ...+-|-.+|--.+..-...|+.+...++|++... |...
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr 359 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHH
Confidence 000011111 44555677788888888889999999999998764 2221
Q ss_pred hHHHHH--------HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhhHhcCCCC
Q 037414 273 SWSAMI--------AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC----SHTGLVEEGLRLFSSMWDDFAVRP 340 (577)
Q Consensus 273 ~~~~li--------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~~~~~p 340 (577)
.|.--| -.-....+.+.+.++|+..++. ++-...||.-+=-.| .+..++..|.+++...+ |.-|
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cP 435 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCP 435 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCC
Confidence 122211 1123467899999999999884 454566776554433 45678999999999887 8899
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP--GHYVLLSN 416 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~ 416 (577)
...++...|+.=.+.+.+|...+++++. ...| |-.+|......-...|+.+.|..+|+-++.....+. ..|...+.
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 9999999999999999999999999987 5566 667999998888999999999999999887653322 34556666
Q ss_pred HHhccCChhHHHHHHHHHhhCCCccCCceeEEEE
Q 037414 417 VYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEV 450 (577)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 450 (577)
.-...|.++.|..+++.+.++.-.. -.|+..
T Consensus 516 FEi~~~E~ekaR~LYerlL~rt~h~---kvWisF 546 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDRTQHV---KVWISF 546 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHhcccc---hHHHhH
Confidence 6678999999999999998765321 157653
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2e-08 Score=99.15 Aligned_cols=250 Identities=13% Similarity=0.044 Sum_probs=179.6
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
|-...++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.++. ...|....+|-++.
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV-------------~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLV-------------DLYPSKALSWFAVG 319 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHH-------------HhCCCCCcchhhHH
Confidence 344455555555555555442 4444444444455555555443333322222 22334566788888
Q ss_pred HHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 88888999999999999876533 357999999999999999999988876654 11122222334456788899999
Q ss_pred HHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCC-----C---CC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 325 GLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMS-----V---EK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
|.++|.+.. ++-|+ +...+-+.-..-..+.+.+|..+|+..- + .+ -..+++.|..+|++.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 56664 5555555555667788999999988761 1 11 2346888889999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
..+++.+.+.|.++.+|..+.-+|...|+++.|.+.|.+-.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998765
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=2.2e-08 Score=106.25 Aligned_cols=258 Identities=10% Similarity=-0.027 Sum_probs=179.6
Q ss_pred CcchHHHHHHHHHh-----CCChhHHHHHHHHHHHCCCCCCc-chHHHHHHHHh---------cCCChHHHHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSK-----VADFINCFETFREFIRCGMQLDS-YTLPFVIRACR---------DRKDIVMGRLIHDIVLK 186 (577)
Q Consensus 122 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 186 (577)
+...|...+.+-.. .+..++|+++|++..+. .|+. ..|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44556666665322 23467899999998874 5654 34444443332 23457899999999998
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 037414 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM 266 (577)
Q Consensus 187 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~ 266 (577)
.. +.+...+..+..++...|++++|...|++..+.++ .+...+..+...|...|++++|...+++.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-------------~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-------------ISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 75 55788888899999999999999999999876432 24567788899999999999999999998
Q ss_pred cC--CChh-hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-
Q 037414 267 RQ--KNVI-SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD- 341 (577)
Q Consensus 267 ~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 341 (577)
.+ |+.. .+..++..+...|++++|+..+++..... .|+ ...+..+..++...|+.++|...+..+.. ..|+
T Consensus 399 l~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~ 474 (553)
T PRK12370 399 LKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITG 474 (553)
T ss_pred HhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchh
Confidence 75 4322 33444555777899999999999987653 343 44466677788899999999999988753 2444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
....+.+...|...| ++|...++.+ ...|....+.. ..+.-+|+.+.+... +++.+.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHHH-HHhhccc
Confidence 344455556677777 4777766665 23344344433 335556777777666 7766654
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.8e-08 Score=92.70 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K 269 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~ 269 (577)
|..--+-+..+|.+.|.+.+|.+.|+.-.+. .|.+.+|..|-..|.+..+.+.|+.+|.+-.+ |
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP 287 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP 287 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC
Confidence 4444467889999999999999999876542 35667888899999999999999999998875 5
Q ss_pred ChhhH-HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 270 NVISW-SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 270 ~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
..+|| .-+...+-..++.++|.++|+...+. -+.+......+...|.-.++++-|..+++.+++- |+ .+.+.|+.+
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~Ni 364 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNI 364 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhH
Confidence 44444 45778888899999999999998876 2445566667777888889999999999999864 65 456677777
Q ss_pred HHHHHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 349 VDLLGRAGRLDEALKLIESM---SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.-.+.-.+++|-++.-|++. .-+|+ ..+|-.+.......||+..|.+.|+-.+..+|++..+++.|.-.-.+.|+
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 77777789999999888876 22344 34898898889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCC
Q 037414 424 WQDVAKIRDLMTRRR 438 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (577)
+++|..++....+..
T Consensus 445 i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVM 459 (478)
T ss_pred hHHHHHHHHHhhhhC
Confidence 999999998876544
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.00 E-value=1.1e-07 Score=96.70 Aligned_cols=237 Identities=14% Similarity=0.113 Sum_probs=157.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC-----C-CCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHc-----C--CCC
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRC-----G-MQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKS-----G--LDI 191 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~ 191 (577)
...+...|...|+++.|..+++...+. | ..|...+. +.+...|...+++++|..+|+.++.. | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444888999999999999999888764 2 12343333 33556788899999999999988763 3 122
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc---C
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR---Q 268 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~---~ 268 (577)
-..+++.|..+|.+.|++++|...+++..+ +++... .
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------------------I~~~~~~~~~ 321 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------------------IYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------------------HHHHhhccCh
Confidence 246677788899999999999988765432 222211 1
Q ss_pred CChh-hHHHHHHHHHHcCChHHHHHHHHHhhhC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhhHhc----
Q 037414 269 KNVI-SWSAMIAAYGYHGQGKKALDLFPMMLSS---RVLPN----RITFVSLLYACSHTGLVEEGLRLFSSMWDDF---- 336 (577)
Q Consensus 269 ~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 336 (577)
+.+. .++.++..+...+++++|..+++...+. -+.++ ..+++.+...|.+.|++++|.++|++.++..
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence 1111 2334445555556666666555544321 12222 2467777777777888888877777776532
Q ss_pred C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 337 A-VRPD-VKHYTCMVDLLGRAGRLDEALKLIESM--------SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 337 ~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+ ..+. ...++-|...|.+.++.++|.++|.+. +-.|+.. +|..|...|...|+++.|+++.+.+..
T Consensus 402 ~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 402 GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 1122 355667777788888888887777665 2345544 899999999999999999999988763
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.7e-06 Score=82.56 Aligned_cols=268 Identities=10% Similarity=0.028 Sum_probs=177.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 200 (577)
|+.....+...+...|+.++|+..|+..+.. .|+..+- ..-.-.+.+.|+.+....+...+.... .-+...|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 6666777888888888888888888877653 3433221 111122345667776666666554432 12223333333
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHH
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAM 277 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 277 (577)
.......++..|..+-++..+.+.. +...+-.-...+...|+.++|.-.|+.... -+..+|..+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-------------~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-------------NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGL 374 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-------------cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4444566777777777766554332 222333335566778888888888887653 467788899
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHH
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL-YACS-HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGR 354 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~ 354 (577)
+..|...|.+.+|..+-+...+. ++.+..+...+- ..|. ...--++|.+++++.+ .+.|+ ....+.+...+..
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHh
Confidence 99999999988888776665443 333444544331 2222 2223477888888775 45666 4556677788888
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 355 AGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
.|+.+++..++++. ...||....+.|...++..+.+++|...|..++..+|++..
T Consensus 451 Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred hCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 89999999988886 56788888888888888888999999999999999988754
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=8.9e-08 Score=93.12 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=142.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYA 315 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 315 (577)
...|..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|.+.|++..+. .|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45677888899999999999999998864 45678999999999999999999999999875 454 5677788888
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a 393 (577)
+...|++++|.+.|+...+ ..|+..........+...++.++|...|++. ...|+...| .+ .....|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~--~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NI--VEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HH--HHHHccCCCHH
Confidence 8999999999999999975 3555432222233345678899999999665 223333222 22 22334555443
Q ss_pred HHHHHHHH-------hcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 394 EMAAKSLL-------ERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 394 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
..++.+. +..|..+.+|..+...|.+.|++++|...|++..+.++
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3444444 34456678999999999999999999999999886553
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.8e-06 Score=77.47 Aligned_cols=325 Identities=12% Similarity=0.042 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCCCCC-cchHHHHHHHHHhCCC--hhH-------------HHHHHHHHHHCC---
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMKERD-SVSWSVMVGGFSKVAD--FIN-------------CFETFREFIRCG--- 153 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~--~~~-------------A~~~~~~m~~~g--- 153 (577)
..---.+..|.-.++-+.|.....+.+.+- ..--|.|+.-+-+.|. .++ |++.+.-..+.+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g 177 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNG 177 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcc
Confidence 334456777777888889998888887653 3334444443333332 111 222222222222
Q ss_pred ------------CCCCcchHHHHHHHHhc--CCChHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 154 ------------MQLDSYTLPFVIRACRD--RKDIVMGRLIHDIVLK-SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 154 ------------~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
+.|+..+....+.+++. .++-..+.+.+-.+.+ .-++.++.....+.+.|...|+.++|...|++
T Consensus 178 ~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~ 257 (564)
T KOG1174|consen 178 NEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSS 257 (564)
T ss_pred hhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHH
Confidence 23444455555555433 3343444444443333 33677889999999999999999999999999
Q ss_pred CCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHH
Q 037414 219 MPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFP 295 (577)
Q Consensus 219 m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 295 (577)
...-|+.+..+| | .|..| +...|+.++-..+...+... ....|-.-....-...+++.|+.+-.
T Consensus 258 ~~~~dpy~i~~M--------D--~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 258 TLCANPDNVEAM--------D--LYAVL---LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred HhhCChhhhhhH--------H--HHHHH---HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 887776655444 1 22222 33455555555555544322 22334333444444556666666666
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC
Q 037414 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM--SVEK 372 (577)
Q Consensus 296 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p 372 (577)
+.++.. +-+...|..--.++...+++++|.-.|+... .+.| +...|..|+..|...|++.||.-+-+.. .+..
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 655432 1122233333344555666666666666653 3443 4566666666666666666655433322 1112
Q ss_pred CHhHHHHHH-HHH-HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 373 DEGLWGALL-GAC-RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 373 ~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+..+...+. ..| -...--++|..++++.++++|.-..+.+.+...+...|+.+++..+++.-
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 222332221 111 11122355666666666666665556666666666666666666655543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=6.2e-08 Score=89.32 Aligned_cols=228 Identities=11% Similarity=0.055 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
+-+-++|.+.|-+.+|.+.++.-++. .|-+.||-.|-.+|.+..+++.|+.+|.+-.+. ++-|+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-------------fP~~VT 291 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-------------FPFDVT 291 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-------------CCchhh
Confidence 34556677778888887777776665 455566777777888888888888887765542 233444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
........+-..++.++|.++|+...+ .++.+..++..+|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~y 370 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLY 370 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHh
Confidence 555667777788888888888888765 45666777778888899999999999999999866 56678888888888
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.+++|-+..-|+..+.. .-.|+ ..+|-.+-......|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|.
T Consensus 371 aqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar 449 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR 449 (478)
T ss_pred hcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence 99999999888887643 33344 456777777778889999999999876 3234 4558888888889999999999
Q ss_pred HHHHHHHhcCCC
Q 037414 395 MAAKSLLERQPQ 406 (577)
Q Consensus 395 ~~~~~~~~~~p~ 406 (577)
.++..+....|.
T Consensus 450 sll~~A~s~~P~ 461 (478)
T KOG1129|consen 450 SLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhhhhCcc
Confidence 999999888876
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8.8e-07 Score=87.81 Aligned_cols=278 Identities=15% Similarity=0.058 Sum_probs=209.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
++..--.-..-+-..+++.+..++++...+. .+++...+..-|..+...|+..+-..+=.++++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333444455677789999999999999886 4556677777777888888887776666677776 4667889999999
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHH
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMI 278 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 278 (577)
-|...|+..+|++.|.+...-|.. -...|-.+...|+-.|..|.|...+....+ .....+--+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 999999999999999887654321 244677789999999999999888876543 1111222244
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc-CCCC----CHHHHHHHHHHHH
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-AVRP----DVKHYTCMVDLLG 353 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~ 353 (577)
--|.+.++.+.|.+.|.+.... .+-|+...+-+.-..-..+.+.+|..+|+..+..- .+.+ ...+++-|..+|.
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 5677889999999999988764 23455666666666667889999999999886311 1111 3456788889999
Q ss_pred HcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 354 RAGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+++++|+..+++. .. ..|..++.++.-.+...|+++.|...|.+.+-+.|++..+-..|.
T Consensus 467 kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 467 KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 999999999999987 33 347789999999999999999999999999999999865444443
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=3.9e-07 Score=88.65 Aligned_cols=227 Identities=15% Similarity=0.029 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHHHHcC-CCC--cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSG-LDI--DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+.+ +.+...|+.+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------------P~~~~a~~~lg~ 106 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------------PDMADAYNYLGI 106 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------------CCCHHHHHHHHH
Confidence 34455555666666432 112 13456677777888888888888887765533 224667788888
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
.|...|++++|...|++..+ | +...|..+...+...|++++|++.|++..+. .|+..........+...++.++|
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A 184 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQA 184 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHH
Confidence 88888888888888888754 3 3567777888888889999999999888774 44432222222233456788899
Q ss_pred HHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH--HHHHHhC-CC----CC-CHhHHHHHHHHHHhcCCHHHHHHHH
Q 037414 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA--LKLIESM-SV----EK-DEGLWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
...|..... ...|+...+ .++.. ..|++.++ .+.+.+- .. .| ....|..+...+...|+.++|+..|
T Consensus 185 ~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~ 259 (296)
T PRK11189 185 KENLKQRYE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALF 259 (296)
T ss_pred HHHHHHHHh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888876543 223333222 23332 34444333 3222221 11 12 2347888899999999999999999
Q ss_pred HHHHhcCCCCc-hhHHHHHHHH
Q 037414 398 KSLLERQPQNP-GHYVLLSNVY 418 (577)
Q Consensus 398 ~~~~~~~p~~~-~~~~~l~~~~ 418 (577)
+++++.+|++. ..-..++...
T Consensus 260 ~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 260 KLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHHHHhCCchHHHHHHHHHHHH
Confidence 99999997543 3333344433
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=8e-07 Score=86.51 Aligned_cols=216 Identities=10% Similarity=0.011 Sum_probs=170.0
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
.-.|+.-.+.+-++..++.... +...|--+..+|....+.++-.+.|+....-|+. |..+|.--..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-------------n~dvYyHRgQ 402 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-------------NPDVYYHRGQ 402 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-------------CCchhHhHHH
Confidence 3467888888999998887533 3344777888899999999999999988765432 5677888888
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
++.-.+++++|..=|++... .++..|-.+..+.-+.++++++...|++..+. ++--...|+.....+...+++++|
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 88889999999999999876 34566777777777888999999999999876 555667888889999999999999
Q ss_pred HHHHHHhhHhcCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 326 LRLFSSMWDDFAVRPD---------VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.+.|+..++ +.|+ +.+.-+++..-. .+++..|.+++++. .+.| ....+..|...-.+.|+.++|+
T Consensus 482 ~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 482 VKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred HHHHHHHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 999998863 3443 222223332223 38999999999987 5666 4458999999999999999999
Q ss_pred HHHHHHHhc
Q 037414 395 MAAKSLLER 403 (577)
Q Consensus 395 ~~~~~~~~~ 403 (577)
++|++...+
T Consensus 558 elFEksa~l 566 (606)
T KOG0547|consen 558 ELFEKSAQL 566 (606)
T ss_pred HHHHHHHHH
Confidence 999998765
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.86 E-value=8.7e-06 Score=83.81 Aligned_cols=338 Identities=15% Similarity=0.106 Sum_probs=206.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcch
Q 037414 84 VAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYT 160 (577)
Q Consensus 84 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 160 (577)
....+.-|..+|-.|.-+..++|+++.+-+.|++...- ....|+.+-..|...|.-..|+.+.+.-....-.|+..+
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 33445678999999999999999999999999987542 455799999999999999999999988765433354444
Q ss_pred HHHH-HHHHh-cCCChHHHHHHHHHHHHc--CC--CCcHHHHHHHHHHHHhCC-----------CHHHHHHHHhhCCCCC
Q 037414 161 LPFV-IRACR-DRKDIVMGRLIHDIVLKS--GL--DIDQFVCAALVDMYAKCK-----------VIDDARQLFDQMPTRD 223 (577)
Q Consensus 161 ~~~l-l~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~ 223 (577)
--.+ -..|. +.+..+++..+-.++++. +. ......|-.+.-+|...- ...++.+.+++..+.|
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333 33343 457777777777666662 11 122344444444444321 2345666677665443
Q ss_pred hhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 224 LVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 224 ~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
... |++.. -|.--|+-.++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+...+
T Consensus 475 ~~d-----------p~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 475 PTD-----------PLVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CCC-----------chHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 321 11111 122224444455555444443322 2334444444444444444444444333222
Q ss_pred C-CC----------------------------------------------------------------------------
Q 037414 300 S-RV---------------------------------------------------------------------------- 302 (577)
Q Consensus 300 ~-g~---------------------------------------------------------------------------- 302 (577)
. |.
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 1 00
Q ss_pred -------------------CCCH------HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcC
Q 037414 303 -------------------LPNR------ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAG 356 (577)
Q Consensus 303 -------------------~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 356 (577)
.|+. ..+......+...+..++|...+.+.. ++.| ....|......+...|
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHH
Confidence 0010 001122223333444445544444442 2222 2344555555666778
Q ss_pred CHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 357 RLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEM--AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
++++|.+.|... .+.|+.+ +..++...+.+.|+...|.. ++..+++.+|.++..|..|...+.+.|+.++|.+.|.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 888888877766 6677554 88888889999998888887 9999999999999999999999999999999999998
Q ss_pred HHhhC
Q 037414 433 LMTRR 437 (577)
Q Consensus 433 ~m~~~ 437 (577)
...+-
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 77654
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=4e-07 Score=80.40 Aligned_cols=162 Identities=16% Similarity=0.100 Sum_probs=126.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLL 352 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 352 (577)
...+.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..+ .+.|+ ..+.|-...-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHHH
Confidence 4456677888888888888888888752 2234577777888888888888888888876 34554 45666666777
Q ss_pred HHcCCHHHHHHHHHhCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 353 GRAGRLDEALKLIESMSVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.+...+.....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888888732332 3478888888888899999999999999999999888889999999999999999
Q ss_pred HHHHHHhhCCC
Q 037414 429 KIRDLMTRRRL 439 (577)
Q Consensus 429 ~~~~~m~~~g~ 439 (577)
..++.....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 98888876654
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.83 E-value=9.5e-06 Score=81.73 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=159.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CCh-hHHHHHHhc
Q 037414 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDID---QFVCAALVDMYAKCKVIDDARQLFDQMPT---RDL-VTWTVMIGA 233 (577)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~-~~~~~~i~~ 233 (577)
|..+.+.|-..|+++.|+.+|++..+-.++.- ..+|.....+-.+..+++.|+++.+.... +.. .-|.
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd----- 464 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD----- 464 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc-----
Confidence 44455555666666666666666655443221 34455555555555566666666555421 100 0000
Q ss_pred CCCCc------chhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 234 NKFLL------DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA---MIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 234 ~g~~~------~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
.+.++ +..+|...++.--..|-++....+|+++.+--+.|=-. -..-+-.+.-++++.+.+++-+..=-.|
T Consensus 465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 12222 33455556666667888888888998887622222111 1122334566889999988766653445
Q ss_pred CHH-HHHHHHHHH---hccCCHHHHHHHHHHhhHhcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhC--CCCCC--H
Q 037414 305 NRI-TFVSLLYAC---SHTGLVEEGLRLFSSMWDDFAVRPDVKH--YTCMVDLLGRAGRLDEALKLIESM--SVEKD--E 374 (577)
Q Consensus 305 ~~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~ 374 (577)
+.. .++..+.-+ .....++.|..+|++.++ |.+|...- |-...+.=-+.|-...|..++++. ++++. .
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l 622 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRL 622 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHH
Confidence 553 344433322 233468999999999986 66665322 222222223468888899999998 34443 2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..|+..|.-....=.+..-..+++++++.-|++. ....-.+..-.+.|..+.|..++..-.+
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3888888665554446667789999998877643 2333455666788999999999876543
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=2.4e-05 Score=78.79 Aligned_cols=300 Identities=9% Similarity=-0.063 Sum_probs=156.0
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCcchHH-HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHH---H
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLP-FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAA---L 199 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---l 199 (577)
.|..+...+...|+++.+.+.+....+... .++..... .....+...|++++|..++++..+.. |.|...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 344455555555666665555554443211 11111111 11122445667777777777666653 334333331 1
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHH
Q 037414 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSA 276 (577)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 276 (577)
.......|..+.+.+.++..... .+........+...+...|++++|...+++..+ .+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~ 153 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPE-------------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHA 153 (355)
T ss_pred HHhcccccCchhHHHHHhccCcC-------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 11222234445555554432111 111233444556667777777777777777654 33455666
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-H--HHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRV-LPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-T--CMVD 350 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~ 350 (577)
+...|...|++++|..++++...... .|+. ..+..+...+...|+.++|..+++.........+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 77777777788888877777665421 1222 233456666777788888888777764221111111111 1 2223
Q ss_pred HHHHcCCHHHHHHH---HHhC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C--------CCchhHHHH
Q 037414 351 LLGRAGRLDEALKL---IESM-SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-P--------QNPGHYVLL 414 (577)
Q Consensus 351 ~~~~~g~~~~A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l 414 (577)
-+...|..+.+.++ .... +..| ..........++...|+.+.|..+++.+.... . .........
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~ 313 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAE 313 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHH
Confidence 33333432222222 1111 1001 11222245566778888999988888876532 1 123344566
Q ss_pred HHHHhccCChhHHHHHHHHHhhCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..++...|++++|.+.+.......
T Consensus 314 A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 314 ALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 667889999999999998776543
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=2.1e-06 Score=88.43 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=110.3
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc-------------CCCCCHH--HHHHHHHHHH
Q 037414 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-------------AVRPDVK--HYTCMVDLLG 353 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~--~~~~li~~~~ 353 (577)
.+..++..+...|+++ +|+.|-..|......+-..+++....... .-.|+.. ++..+...|-
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4556667777788664 56666666665555555555555543321 1124443 4456678888
Q ss_pred HcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
..|++++|++++++. ...|+. ..|..-...+...|++++|.+.++.+.++++.|...-.-.+..+.++|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999976 556764 477778888999999999999999999999998777777788889999999999999
Q ss_pred HHHhhCCC
Q 037414 432 DLMTRRRL 439 (577)
Q Consensus 432 ~~m~~~g~ 439 (577)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877765
No 77
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.78 E-value=7.3e-05 Score=75.60 Aligned_cols=337 Identities=15% Similarity=0.141 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCC----------CcchHHHHHHHHHhCCChh---HHHHHHHHHHHCCCCCCc
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKER----------DSVSWSVMVGGFSKVADFI---NCFETFREFIRCGMQLDS 158 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~ 158 (577)
+..-+--|..+++.+++++|.+.+..+... +-..|+.+-...+++-+.- ....+++.+.. .-+|.
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq 246 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQ 246 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHH
Confidence 344556677777888888888877776542 3335666666666554432 23334444433 23453
Q ss_pred --chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----------------------HHHHHH
Q 037414 159 --YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV----------------------IDDARQ 214 (577)
Q Consensus 159 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~ 214 (577)
..|++|.+-|.+.|.++.|..++++.+..- .++.-++.+-+.|+.... ++-...
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 457888888888888888888888877652 333344444444443211 122222
Q ss_pred HHhhCCCCChhHHHHHHhc-------------------------------CCCCc------chhhHHHHHHHHHhcCCHH
Q 037414 215 LFDQMPTRDLVTWTVMIGA-------------------------------NKFLL------DVILGTAVIDMYAKCGSID 257 (577)
Q Consensus 215 ~~~~m~~~~~~~~~~~i~~-------------------------------~g~~~------~~~~~~~Li~~~~~~g~~~ 257 (577)
-|+.+.++-+..-|+.+-. ..+.| -...|..+.+.|-..|+++
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 2333322111111111111 11111 2457788999999999999
Q ss_pred HHHHHHHhccCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-----------CCH------HHHHHHH
Q 037414 258 SAREIFDRMRQKN-------VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-----------PNR------ITFVSLL 313 (577)
Q Consensus 258 ~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~------~t~~~ll 313 (577)
.|..+|++..+-+ ...|..-...-.++.+++.|+++.+......-. +.. ..+...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 9999999987632 235666667777888999999998887643111 111 1233334
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHhC-C-C-CCCHh-HHHHHHHHHHh--
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVK-HYTCMVDLLGRAGRLDEALKLIESM-S-V-EKDEG-LWGALLGACRI-- 386 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~-~-~p~~~-~~~~ll~~~~~-- 386 (577)
+.--..|-++....+++.++.-.-..|... .|.. .+-...-++++.+++++- + + -|++. .|+..+.-+.+
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAm---fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM---FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 444445677777788888764322233321 2222 234556689999999986 2 2 34554 88888876543
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 387 -HKNVDLAEMAAKSLLERQPQNP--GHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 387 -~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
....+.|..+|+++++.-|+.. ..|...+..-.+-|.-..|+.++++..
T Consensus 562 gg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3468999999999999777532 233333333445577777888887753
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=4.3e-07 Score=87.13 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh-hHHHHHHHH
Q 037414 357 RLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW-QDVAKIRDL 433 (577)
Q Consensus 357 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 433 (577)
.+.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++.+....|+. +.+.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 455555555555 22244445555555555666666666666666555566655555555555555555 444455555
Q ss_pred Hh
Q 037414 434 MT 435 (577)
Q Consensus 434 m~ 435 (577)
++
T Consensus 262 L~ 263 (290)
T PF04733_consen 262 LK 263 (290)
T ss_dssp CH
T ss_pred HH
Confidence 44
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.77 E-value=3.8e-07 Score=87.51 Aligned_cols=253 Identities=11% Similarity=0.051 Sum_probs=145.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 037414 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 212 (577)
+.-.|++..++.-.+ .....-..+......+.+++...|..+.+ +.++.+.. .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 11111111223344556666666665532 23332222 45544444444333333444555
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHH
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALD 292 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 292 (577)
..-+++....... ..+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+
T Consensus 86 l~~l~~~~~~~~~-----------~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k 152 (290)
T PF04733_consen 86 LEELKELLADQAG-----------ESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEK 152 (290)
T ss_dssp HHHHHHCCCTS--------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhccc-----------cccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHH
Confidence 5545443322111 112233333445566778888888777765 455556667788888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 293 LFPMMLSSRVLPNRITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 293 l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.++.|.+. ..| .+...+..++.. ...+.+|..+|+++.+ ...+++.+.+.+.-+....|++++|.+++++.
T Consensus 153 ~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 153 ELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888764 333 334445554433 2357888888888854 34577788888888888888999998888775
Q ss_pred -CCCC-CHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCc
Q 037414 369 -SVEK-DEGLWGALLGACRIHKNV-DLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 369 -~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 408 (577)
...| |..+...++......|+. +.+.+.+.++....|..+
T Consensus 228 l~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 228 LEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 3344 445677777777777777 777888888888888865
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=5.4e-06 Score=85.52 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=72.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 386 (577)
.-+...|...|+.++|.++.+..++ ..|+ ++.|..-...|-+.|++++|.+.++.. .+.+ |-..-+.....+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3344556666777777777766653 2444 556666666666777777776666665 2222 33444445555666
Q ss_pred cCCHHHHHHHHHHHHhcC--CCC-------chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 387 HKNVDLAEMAAKSLLERQ--PQN-------PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.|++++|..++....+.+ |.. .......+.+|.+.|++..|++-+..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677777776666654443 111 01223456677777877777776665543
No 81
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.3e-07 Score=92.22 Aligned_cols=220 Identities=16% Similarity=0.097 Sum_probs=170.4
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHH
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMI 278 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 278 (577)
-+.+.|++.+|.-.|+.....|+. +...|.-|...-...++-..|...+.+..+ .|....-+|.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-------------haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-------------HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-------------HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 356778888888888887766543 566777778888888888888888888765 3456667777
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVL--------PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
-.|...|.-.+|+..++..+....+ ++..+-.. ..+.....+....++|-.+....+..+|..++.+|.-
T Consensus 361 VSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 361 VSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 7888888888999999888654211 00000000 1222333455666777777666676678888889999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
.|--.|.+++|.+.|+.. .++| |..+||.|...++...+.++|+..|.+++++.|.-..+...|.-.|...|.+++|.
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence 999999999999999988 6778 55699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 037414 429 KIRDLMTR 436 (577)
Q Consensus 429 ~~~~~m~~ 436 (577)
+.|-....
T Consensus 519 ~hlL~AL~ 526 (579)
T KOG1125|consen 519 KHLLEALS 526 (579)
T ss_pred HHHHHHHH
Confidence 99876543
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=3.7e-05 Score=77.02 Aligned_cols=392 Identities=13% Similarity=0.127 Sum_probs=231.5
Q ss_pred hHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCC-hhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHH--HHHH
Q 037414 25 TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVD-PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANK--LLYI 101 (577)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~-~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~ 101 (577)
+-++-+...|.+++|+..-...... .|| ...+..=+.+....+.-...+..+...+. ..+++. +=.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~-------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKA 86 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSI-------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKA 86 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhc-------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHH
Confidence 3445567788888888888777644 233 33343333333343333333333333331 111222 2344
Q ss_pred HH--cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC------------------------
Q 037414 102 YA--LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ------------------------ 155 (577)
Q Consensus 102 ~~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------ 155 (577)
|+ +.+..|+|+..++....-+...-..-...+-+.|++++|+++|+.+.+.+..
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 54 6789999999998665555556666677888999999999999998554321
Q ss_pred -C--CcchHHHHHHH---HhcCCChHHHHHHHHHHHHcCC-------CC--cH-----HHHHHHHHHHHhCCCHHHHHHH
Q 037414 156 -L--DSYTLPFVIRA---CRDRKDIVMGRLIHDIVLKSGL-------DI--DQ-----FVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 156 -p--~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~-------~~--~~-----~~~~~li~~~~~~g~~~~A~~~ 215 (577)
| ...+|..+.+. +...|++..|++++....+.+. .. +. .+---|.-++-..|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1 12355555443 4578999999999988843211 00 11 1222344566778999999998
Q ss_pred HhhCCCCCh-------hHHHHHHhcCCCCc--c-----------------------------hhhHHHHHHHHHhcCCHH
Q 037414 216 FDQMPTRDL-------VTWTVMIGANKFLL--D-----------------------------VILGTAVIDMYAKCGSID 257 (577)
Q Consensus 216 ~~~m~~~~~-------~~~~~~i~~~g~~~--~-----------------------------~~~~~~Li~~~~~~g~~~ 257 (577)
+..+...+. +.-|-+++..+..+ | ..--+.|+.+| .+..+
T Consensus 247 y~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~ 324 (652)
T KOG2376|consen 247 YVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD 324 (652)
T ss_pred HHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence 887764322 11222222211110 0 00111222222 23334
Q ss_pred HHHHHHHhccCCC-hhhHHHHHHHHH--HcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--
Q 037414 258 SAREIFDRMRQKN-VISWSAMIAAYG--YHGQGKKALDLFPMMLSSRVLPNR--ITFVSLLYACSHTGLVEEGLRLFS-- 330 (577)
Q Consensus 258 ~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~-- 330 (577)
.+.++-...+... ...+.+++.... +...+.+|.+++...-+. .|+. ......+......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444443311 233444443332 223466777777776554 3333 344455666788999999999998
Q ss_pred ------HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HhHHHHHHHHHHhcCCHHHHHH
Q 037414 331 ------SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--------SVEKD-EGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 331 ------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.+. +.+.. +.+..+++..|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|+.++|..
T Consensus 403 ~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 443 22333 445567888888888766666666554 11222 2244445555567899999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+++++.+.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999876 567777665444
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=2.9e-06 Score=75.05 Aligned_cols=194 Identities=13% Similarity=0.073 Sum_probs=162.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+.|++..... +-+....|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4556788899999999999999998863 34589999999999999999999999998752 2245567777777889
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
.|.+++|.+.|+..+.......-..+|.-+.-.-.+.|+.+.|.+.|++. ...|+ ..+...+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 99999999999999876444444678888888888999999999999887 44553 44777888888999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++......+.+.......+.+-...|+-+.+.+.=..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998888888888999999999999988888776654
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=4.9e-05 Score=77.00 Aligned_cols=301 Identities=11% Similarity=0.020 Sum_probs=160.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCcchHHHHHH------HHhcCCChHHHHHHHHHHHHcCCCCcHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCG-MQLDSYTLPFVIR------ACRDRKDIVMGRLIHDIVLKSGLDIDQF 194 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 194 (577)
....|..+..++.-.|++..|..+.++..+.. -.|+...|..... ...+.|.++.|.+.+..-... +.....
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla 220 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLA 220 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHH
Confidence 34456666666666666666666666665543 1344443322211 234455555555555433222 122223
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHhccCCC-hh
Q 037414 195 VCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAR-EIFDRMRQKN-VI 272 (577)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~-~~~~~~~~~~-~~ 272 (577)
.-..-.+.+.+.+++++|..++..+..+++. +...|-.+..++.+--+.-++. .+|....+.- ..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-------------n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPD-------------NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-------------hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 3334455666667777777766666554322 2333334444444333333333 4444443200 00
Q ss_pred h-HHHHHHHHHH-cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh---HhcC----------
Q 037414 273 S-WSAMIAAYGY-HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW---DDFA---------- 337 (577)
Q Consensus 273 ~-~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~---------- 337 (577)
. -.-+--...+ ..-.+..-.++..+.+.|+++- |..+.+-|-.....+--+++.-.+. ...|
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 0 0000000111 1122334455666677776643 3334433333222221122221111 1111
Q ss_pred CCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 338 VRPDVKH--YTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 338 ~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
-+|+... +-.++..|-+.|+++.|+..++.. +..|+.+ .|..-.+.+...|++++|...++++.+++-.|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 1455444 446778889999999999999987 5556654 55555577889999999999999999998666433224
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
-+.-..++.+.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 45566788999999999988887764
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=2.9e-05 Score=78.15 Aligned_cols=295 Identities=12% Similarity=0.029 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcch---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-chHHH-
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKE---RDSVS---WSVMVGGFSKVADFINCFETFREFIRCGMQLDS-YTLPF- 163 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~- 163 (577)
...+..+...|...|+.+++.+.+....+ .+... .......+...|++++|.+.+++..+. .|+. ..+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHh
Confidence 33455555566666767665555544322 12222 222233566788999999999888875 3433 33331
Q ss_pred --HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 164 --VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 164 --ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
........+..+.+.+.+... ....+........+...+...|++++|.+.+++..+.+ +.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------------p~~~~ 149 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------------PDDAW 149 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------CCCcH
Confidence 111112234455555555441 11122334455566678888999999999998876543 22456
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC--C---Ch--hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCCHHHH-H--
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ--K---NV--ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPNRITF-V-- 310 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~-- 310 (577)
.+..+...|...|++++|...+++..+ + +. ..|..+...+...|++++|..++++...... .+..... +
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAA 229 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHH
Confidence 777888889999999999999988764 1 21 2355678888999999999999999864322 1222211 1
Q ss_pred HHHHHHhccCCHHHHHHH--HHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----hHH
Q 037414 311 SLLYACSHTGLVEEGLRL--FSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESMS--VEK---DE----GLW 377 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~--~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p---~~----~~~ 377 (577)
.++.-+...|..+.+.+. +...... ..... .........++...|+.++|..+++.+. ... .. .+-
T Consensus 230 ~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 308 (355)
T cd05804 230 SLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG 308 (355)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh
Confidence 223333333433333222 1111111 11111 1222245567778899999999998871 111 11 122
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHhc
Q 037414 378 GALLGA--CRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 378 ~~ll~~--~~~~g~~~~a~~~~~~~~~~ 403 (577)
..++.+ +...|+.+.|.+.+..++..
T Consensus 309 ~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 309 LPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 223333 56889999999998887754
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=1.2e-05 Score=73.68 Aligned_cols=301 Identities=14% Similarity=0.130 Sum_probs=178.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHH-HHHHHhc
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPF-VIRACRD 170 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~ 170 (577)
+++.+..+.+..++++|++++..-.++ +......|..+|-...++..|-+.++++-.. .|...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 455555566777777887777665554 3344566666777777777887777777653 444443322 2233445
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVD--MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
.+.+..|.++...|... ++...-..-+. .....+++..+..+.++.+..+ +..+.+...-
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---------------~Ad~~in~gC 152 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---------------EADGQINLGC 152 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---------------ccchhccchh
Confidence 56677777776665432 22111111111 2234566666777777766322 2223334444
Q ss_pred HHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
...+.|+++.|.+-|+...+ .....||..+..| +.|+++.|+++..+.++.|++-.+. ++ .|...+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceec
Confidence 55677777777777777654 3445566544433 4567777777777777776553221 00 011111
Q ss_pred HH---------HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHH
Q 037414 325 GL---------RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS----VEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 325 a~---------~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
+. .+....+ ++.+|.-...+.+.|+++.|.+-+..|| .+.|++|...+.-. -..+++.
T Consensus 223 giDvrsvgNt~~lh~Sal--------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~ 293 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSAL--------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPT 293 (459)
T ss_pred cCchhcccchHHHHHHHH--------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcc
Confidence 11 1111110 1223333334568899999999999994 23466666554322 2345667
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.+.+-+.-+++.+|-.+.++..++-.|++..-++-|..++-+-
T Consensus 294 ~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 294 EGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 7777777888889988899999999999999999999887543
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=7.6e-05 Score=69.85 Aligned_cols=200 Identities=12% Similarity=0.049 Sum_probs=138.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHH-HHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMV---GGFSKVADFINCFETFREFIRCGMQLDSYTLPF-VIR 166 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~ 166 (577)
++.-.--|-..+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=|...++ ++||-..-.. --.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch
Confidence 4444445566777789999999999999888888888775 478889999999999988887 5777432211 112
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCC--cHHHH------------HHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 167 ACRDRKDIVMGRLIHDIVLKSGLDI--DQFVC------------AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
.+.+.|.++.|..-|+.+++..... ...++ ...+..+.-.|+...|......+.+-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---------- 184 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---------- 184 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----------
Confidence 3678899999999999998874211 11111 22233455567777777777766653
Q ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc---cCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH
Q 037414 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM---RQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI 307 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 307 (577)
.+.|...+..-..+|...|++..|..=+... ...++...--+-..+-..|+.+.++...++.++ +.||..
T Consensus 185 ---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 185 ---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred ---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 2346667777788888888888886555544 345666666677777788888888888887776 456654
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5.5e-08 Score=59.70 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=30.1
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 187 SGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 187 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
No 89
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.4e-08 Score=59.74 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.0
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCC
Q 037414 86 GGTLTNLIVANKLLYIYALHKALTDAHALFNGMK 119 (577)
Q Consensus 86 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 119 (577)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999999884
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=3.1e-05 Score=72.67 Aligned_cols=353 Identities=13% Similarity=0.062 Sum_probs=196.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
.++|..++..+.... .++..++-.|.-.+.-.|.+.+|..+-...++ ++..-..|.....+.++-++-..+-..+...
T Consensus 73 Y~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~ 150 (557)
T KOG3785|consen 73 YEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT 150 (557)
T ss_pred HHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence 555666665555533 33444444444444444566666665554432 2222333334444455544444443333321
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH-HHHHhCCCHHHHHHHHhhCCC--CC-hhHHH
Q 037414 153 GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV-DMYAKCKVIDDARQLFDQMPT--RD-LVTWT 228 (577)
Q Consensus 153 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~ 228 (577)
..---+|.+..-..-.+++|..++.+++..+ |+....|.-+ -+|.|..-++-+.++++--.+ +| ++.-|
T Consensus 151 -----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 151 -----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred -----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 1111223333333345778888888877653 4444444333 356677766666665543221 11 11111
Q ss_pred H-------HHhc--------------------------------CC------CCc-----chhhHHHHHHHHHhcCCHHH
Q 037414 229 V-------MIGA--------------------------------NK------FLL-----DVILGTAVIDMYAKCGSIDS 258 (577)
Q Consensus 229 ~-------~i~~--------------------------------~g------~~~-----~~~~~~~Li~~~~~~g~~~~ 258 (577)
. ++.| .+ +-| =+..--.|+-.|.+.+++.+
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe 303 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE 303 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH
Confidence 1 1111 00 111 12233456667889999999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHcC-------ChHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 037414 259 AREIFDRMRQKNVISWSAMIAAYGYHG-------QGKKALDLFPMMLSSRVLPNRI-TFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 259 A~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|..+.+++...++.-|-.-.-.++..| +..-|.+.|+-.-.++..-|.+ --.++.+++.-..++++...++.
T Consensus 304 A~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yln 383 (557)
T KOG3785|consen 304 AISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLN 383 (557)
T ss_pred HHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999998886655444433333334443 3455777776665665554432 12234444445567888888888
Q ss_pred HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcC-CC
Q 037414 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VE-KDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQ-PQ 406 (577)
Q Consensus 331 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~ 406 (577)
.+ +.+=...|...+ -+.++++..|.+.+|+++|-.+. .+ .|..+|.+++ ++|.+.+..+.|..+ +++.+ |.
T Consensus 384 Si-~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~ 458 (557)
T KOG3785|consen 384 SI-ESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPS 458 (557)
T ss_pred HH-HHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCch
Confidence 88 444444444444 46788999999999999998873 11 3566777666 456778888877655 45554 33
Q ss_pred Cc-hhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 407 NP-GHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 407 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+. .....+.+-|.+++.+--|.+.|+.+...+.
T Consensus 459 e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 459 ERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 32 3345567789999999999999998876554
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.58 E-value=0.00012 Score=83.54 Aligned_cols=330 Identities=10% Similarity=-0.000 Sum_probs=209.6
Q ss_pred HHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC--C----CCCcc--hHHHHHHHHh
Q 037414 102 YALHKALTDAHALFNGMKE----RDSVSWSVMVGGFSKVADFINCFETFREFIRCG--M----QLDSY--TLPFVIRACR 169 (577)
Q Consensus 102 ~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~ 169 (577)
....|+++.+...++.++. .+..........+...|++++|...+......- . .|... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455777777777777642 133333344455667899999999988775431 1 11111 1112223356
Q ss_pred cCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 170 DRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
..|+++.|...++...+.-...+ ....+.+...+...|++++|...+++........ ............
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-------g~~~~~~~~~~~ 536 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-------DVYHYALWSLLQ 536 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-------cchHHHHHHHHH
Confidence 78999999999988776321122 1344666677888999999999988765310000 000012235566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC-------CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCCC--HHHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ-------KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSR--VLPN--RITFV 310 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~ 310 (577)
+...+...|++++|...+++..+ ++ ...+..+...+...|++++|...+++..... ..+. ...+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 77888999999999998887543 11 1234455566777899999999998876531 1122 23444
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----hHHHH
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-----TCMVDLLGRAGRLDEALKLIESMSV-E-KDE----GLWGA 379 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~ 379 (577)
.+.......|+.++|...+.....-.........+ ...+..+...|+.+.|.+++..... . ... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 45667778899999999988875321111111111 1122445668999999999877621 1 111 12345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQ------PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+..++...|+.++|...++++.+.. +....++..+..+|.+.|+.++|...+.+..+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667888999999999999987652 1123467778889999999999999999887643
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.2e-05 Score=75.92 Aligned_cols=362 Identities=11% Similarity=0.055 Sum_probs=210.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RD-SVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
++.|...|...+... ++|...|+.=..+|++.|++++|++=-.+-.+ |+ ...|+-...++.-.|++++|+.-|.+=
T Consensus 18 ~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G 96 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG 96 (539)
T ss_pred HHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 888888888888776 66888888888999999999888775554433 32 336888888888889999999999887
Q ss_pred HHCCCCC-CcchHHHHHHHHhcCC---ChHHHHHHHHHHHHcC---CCCcHHHHHHHHHH----------HHhCCCHHHH
Q 037414 150 IRCGMQL-DSYTLPFVIRACRDRK---DIVMGRLIHDIVLKSG---LDIDQFVCAALVDM----------YAKCKVIDDA 212 (577)
Q Consensus 150 ~~~g~~p-~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~----------~~~~g~~~~A 212 (577)
++. .| |...++.+..++.... +.-..-.++..+...- .......|..++.. |....++..|
T Consensus 97 L~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a 174 (539)
T KOG0548|consen 97 LEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA 174 (539)
T ss_pred hhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence 764 34 4556666776661110 0000001111111100 00011122222222 2222223333
Q ss_pred HHHHhhCCCCChhHHHHHHhcCCCCc------------c----------hhhHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 037414 213 RQLFDQMPTRDLVTWTVMIGANKFLL------------D----------VILGTAVIDMYAKCGSIDSAREIFDRMRQ-- 268 (577)
Q Consensus 213 ~~~~~~m~~~~~~~~~~~i~~~g~~~------------~----------~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-- 268 (577)
..++......-...-..++...+..| | ..-...|.++.-+..+++.|.+-+....+
T Consensus 175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~ 254 (539)
T KOG0548|consen 175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA 254 (539)
T ss_pred HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence 33322211100000000000001111 1 11234566777777788888888877654
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC--CH----HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP--NR----ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
.++.-++....+|...|.+.+....-....+.|-.- |. ..+..+-.+|.+.++.+.+...|...+..+ ..|+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~-Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH-RTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh-cCHHH
Confidence 344446666778888888877777766666654221 11 122223346666778888888888876553 23332
Q ss_pred HHHH-------------------------HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 037414 343 KHYT-------------------------CMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 343 ~~~~-------------------------~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
..-. .-...+.+.|++..|.+.|.++ ...| |...|..-..+|.+.|.+..|+.
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHH
Confidence 1100 0122345667788888877776 3345 55577777777888888888888
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
-.+..++++|+....|.-=..++....+|++|.+.|.+-.+.+
T Consensus 414 Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 414 DAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888877777777777777778888887777665443
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.58 E-value=4.6e-06 Score=90.73 Aligned_cols=199 Identities=15% Similarity=0.149 Sum_probs=170.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 310 (577)
....|-..+......+++++|++++++... .-.-.|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 456777888889999999999999999864 123478899988888898899999999998752 1234678
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHh
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK---DEGLWGALLGACRI 386 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~ 386 (577)
.|...|.+.+..++|.++++.|.++++ -....|...++.+.+..+-++|..++.+. ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999876 66788999999999999999999999876 2233 44566667777789
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
+||.+.+..+|+..+...|.....|...++.-.+.|+.+.++.+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999887743
No 94
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=3.9e-06 Score=85.83 Aligned_cols=222 Identities=15% Similarity=0.067 Sum_probs=176.4
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 188 GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 188 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
+++|-...-..+...+.+.|-...|..+|+++. .+..+|.+|...|+..+|..+..+-.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------------------mw~~vi~CY~~lg~~~kaeei~~q~l 451 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------------------MWDPVILCYLLLGQHGKAEEINRQEL 451 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------------------HHHHHHHHHHHhcccchHHHHHHHHh
Confidence 345666677788899999999999999999864 34557899999999999998887665
Q ss_pred C--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH
Q 037414 268 Q--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345 (577)
Q Consensus 268 ~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 345 (577)
+ ||...|..+.+......-+++|.++++..-.. .-..+.....+.++++++.+.|+.-.+-+.+ ...+|
T Consensus 452 ek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~w 522 (777)
T KOG1128|consen 452 EKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTW 522 (777)
T ss_pred cCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHH
Confidence 4 77788888888887777888999988865432 1111222223478999999999877653222 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
-.+-.+..+.++++.|.+.|... ...||.. .||.+-.+|.+.++-.+|...+.++++-+-.+...|...+-.-.+.|.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 88888888999999999999876 6678654 999999999999999999999999999887777777777888889999
Q ss_pred hhHHHHHHHHHhhCCC
Q 037414 424 WQDVAKIRDLMTRRRL 439 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g~ 439 (577)
|++|.+.+.+|.+...
T Consensus 603 ~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999998876544
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.52 E-value=2.3e-05 Score=80.85 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDL 351 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 351 (577)
.|......+...++.++|...+.+.... .+-....|......+...|..++|.+.|...+ .+.|+ +....++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 3666677888889999998888777654 23334455555566777899999999999886 56776 6788899999
Q ss_pred HHHcCCHHHHHH--HHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 352 LGRAGRLDEALK--LIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 352 ~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+.+.|+..-|.+ ++..+ .+.| +...|-.+...+.+.|+.+.|.+.|.-..++++.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999998877777 77777 5566 667999999999999999999999999999987665
No 96
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.51 E-value=0.00056 Score=69.57 Aligned_cols=358 Identities=11% Similarity=0.045 Sum_probs=223.8
Q ss_pred hHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhC
Q 037414 62 FFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKV 136 (577)
Q Consensus 62 ~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 136 (577)
-|-.++.++-. ...+......+++ +++-...+....--.+...|+-++|......-.. ++.+.|..+.-.+-..
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 35556665554 5566666666665 3343344444433445567899999888776554 3677899999888888
Q ss_pred CChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 037414 137 ADFINCFETFREFIRCGMQLD-SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQL 215 (577)
Q Consensus 137 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (577)
.++++|++.|+..... .|| ...+.-+--.-++.++++.......++.+.. +.....|..+.-++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 454 4445444444466778887777777776653 45567788888888889999999998
Q ss_pred HhhCCCCChhHHHHHHhcCCCCcchhhHHHH------HHHHHhcCCHHHHHHHHHhccC--CChh-hHHHHHHHHHHcCC
Q 037414 216 FDQMPTRDLVTWTVMIGANKFLLDVILGTAV------IDMYAKCGSIDSAREIFDRMRQ--KNVI-SWSAMIAAYGYHGQ 286 (577)
Q Consensus 216 ~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L------i~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~ 286 (577)
.++..+... ..|+...+.-. .....+.|..++|.+.+..-.. -|-. .--+....+.+.++
T Consensus 166 l~ef~~t~~-----------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 166 LEEFEKTQN-----------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHhhc-----------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh
Confidence 877654211 01222222211 2234567777887777766543 1222 22334566777888
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHH-HHh-ccCCHHHHHHHHHHhhHhc----------------------------
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLY-ACS-HTGLVEEGLRLFSSMWDDF---------------------------- 336 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~-~~g~~~~a~~~~~~m~~~~---------------------------- 336 (577)
.++|..++..++.. .||..-|...+. ++. -.+..+.-..+|....+.+
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR 312 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH
Confidence 88888888888775 466655544433 332 2222222223344332211
Q ss_pred -----CCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHhC-C------------CCCCHhHHHHH--HHHHHhcCCHHH
Q 037414 337 -----AVRPDVKHYTCMVDLLGRAGRLDE----ALKLIESM-S------------VEKDEGLWGAL--LGACRIHKNVDL 392 (577)
Q Consensus 337 -----~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m-~------------~~p~~~~~~~l--l~~~~~~g~~~~ 392 (577)
|+++ ++..+...|-.-...+- +..+...+ + -.|....|... ...+-..|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 2221 12222222221111111 11122222 1 14566666554 455788999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
|....+.++..-|.-++.|..-++++...|.+++|..++++.++.+.
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999887553
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.6e-05 Score=74.83 Aligned_cols=182 Identities=11% Similarity=0.027 Sum_probs=121.9
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CCH-HHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNR-ITF 309 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~ 309 (577)
.....+..+...|.+.|++++|...|+++.. |+. ..+..+...|.+.|++++|...++++.+.... |.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4566777788888888888888888887764 321 35667778888888888888888888765321 111 133
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 037414 310 VSLLYACSHT--------GLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380 (577)
Q Consensus 310 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 380 (577)
..+..++... |+.++|.+.++.+++. .|+. ..+..+... +...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 3444444443 6677788888877643 3432 222222111 0011000 0011245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...+...|++++|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566888999999999999999987765 468899999999999999999999888754
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00048 Score=78.67 Aligned_cols=326 Identities=8% Similarity=-0.009 Sum_probs=194.6
Q ss_pred HHcCCChHHHHHHHhcCCCCCcch--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 037414 102 YALHKALTDAHALFNGMKERDSVS--WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179 (577)
Q Consensus 102 ~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 179 (577)
|...|++.+|..........+... ...........|+++.+...++.+.......+..........+...++++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 344455555555444443321111 111122344567777777766665322111222333334444567789999998
Q ss_pred HHHHHHHcCC------CCc--HHHHHHHHHHHHhCCCHHHHHHHHhhCCCC--ChhHHHHHHhcCCCCcchhhHHHHHHH
Q 037414 180 IHDIVLKSGL------DID--QFVCAALVDMYAKCKVIDDARQLFDQMPTR--DLVTWTVMIGANKFLLDVILGTAVIDM 249 (577)
Q Consensus 180 ~~~~~~~~g~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~i~~~g~~~~~~~~~~Li~~ 249 (577)
.+....+.-- .+. ......+...+...|++++|...+++..+. ....+. -....+.+...
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~a~~~lg~~ 500 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS----------RIVATSVLGEV 500 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH----------HHHHHHHHHHH
Confidence 8887755311 111 122233445667899999999998875431 100000 12245667778
Q ss_pred HHhcCCHHHHHHHHHhccC-------CC--hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCC--C-CHHHHHHHH
Q 037414 250 YAKCGSIDSAREIFDRMRQ-------KN--VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVL--P-NRITFVSLL 313 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll 313 (577)
+...|++++|...+++... +. ..++..+...+...|++++|...+++.... |.. | ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 8899999999999988753 11 234555667788899999999998886652 221 1 223344455
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHH-----HHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFA-VRP--DVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWG-----ALL 381 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~-----~ll 381 (577)
..+...|++++|...+........ ..+ ....+..+...+...|+.++|.+.+++. ........+. ..+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 566778999999999888754211 112 2334445566788899999999888776 1111111111 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchh----HHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGH----YVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..+...|+.+.|...+.......+..... +..+..++...|++++|...+.+....
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556889999998877765433222211 456788899999999999999887653
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=0.00038 Score=73.95 Aligned_cols=309 Identities=13% Similarity=0.094 Sum_probs=167.2
Q ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCCChHHHHHHHhcCC-CCCcc-----hHHHHHHHHHhCCChhHHHHHHH
Q 037414 76 IRQVHAQIVAGGTL--TNLIVANKLLYIYALHKALTDAHALFNGMK-ERDSV-----SWSVMVGGFSKVADFINCFETFR 147 (577)
Q Consensus 76 a~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-~~~~~-----~~~~li~~~~~~g~~~~A~~~~~ 147 (577)
-+++.++.++.+++ .|+.-.+.-+.++...+-..+-.++++++. +++++ .-|.||-...+. +..++.+..+
T Consensus 966 rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~ 1044 (1666)
T KOG0985|consen 966 RRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHH
Confidence 35777888877763 467777778899999999999999998874 33222 344444443333 3345555555
Q ss_pred HHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC---------------------CCCcHHHHHHHHHHHHhC
Q 037414 148 EFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG---------------------LDIDQFVCAALVDMYAKC 206 (577)
Q Consensus 148 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g---------------------~~~~~~~~~~li~~~~~~ 206 (577)
++-... .|+ +...+...+-+++|..+|......+ -.....+|+.+..+-.+.
T Consensus 1045 rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1045 RLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 544321 112 2222333344455555554321000 001223444555555555
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHc
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYH 284 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~ 284 (577)
|.+.+|.+-|-+.. |+..|..+++...+.|.+++-.+.+....+ +....=+.+|-+|++.
T Consensus 1118 ~~v~dAieSyikad------------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKAD------------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKT 1179 (1666)
T ss_pred CchHHHHHHHHhcC------------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHh
Confidence 55555544443322 334455566666666666666655544432 2222334566666666
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
++..+..+++ .-||......+-+-|...|.++.|.-+|... ..|..|...+...|.++.|.+.
T Consensus 1180 ~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1180 NRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred chHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHH
Confidence 6655544443 2455555555666666666666666555544 2355566666667777766665
Q ss_pred HHhCCCCCCHhHHH------------------------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 365 IESMSVEKDEGLWG------------------------------ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 365 ~~~m~~~p~~~~~~------------------------------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
-++.. +..+|. -|+..|...|-+++.+.+++..+.++......|..|
T Consensus 1243 aRKAn---s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1243 ARKAN---STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred hhhcc---chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 55442 333444 445555556666666666666666666666677777
Q ss_pred HHHHhccCChhHHHHHH
Q 037414 415 SNVYANAGRWQDVAKIR 431 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~ 431 (577)
.-.|++- ++++..+-+
T Consensus 1320 aiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred HHHHHhc-CHHHHHHHH
Confidence 7777654 334433333
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00029 Score=74.80 Aligned_cols=310 Identities=15% Similarity=0.171 Sum_probs=209.9
Q ss_pred HHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC-----CC-CCcchHHHHHHHHHhCCC
Q 037414 65 SSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-----KE-RDSVSWSVMVGGFSKVAD 138 (577)
Q Consensus 65 ~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-----~~-~~~~~~~~li~~~~~~g~ 138 (577)
-+++.|..-...+..-+.+++ ..|...|+.++.- .-.--+++.++. ++ .|+..-..-+.++...+-
T Consensus 928 elI~vcNeNSlfK~~aRYlv~---R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVE---RSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHh---ccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 356666653333344444544 3467777776631 111112233332 22 366667778899999999
Q ss_pred hhHHHHHHHHHHHCC-CCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 139 FINCFETFREFIRCG-MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
+.+-++++++..-.. .-........|+-.-+-.-+..++....+++.... .|+ ........+-+++|..+|+
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHH
Confidence 999999999987432 11112223333333333445666777777665543 222 3344556677899999998
Q ss_pred hCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHh
Q 037414 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 218 ~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
+..- +....+.||+ ..+.+|.|.+.-++..+|. .|..+..+-.+.|...+|++-|-+.
T Consensus 1073 kf~~-----------------n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1073 KFDM-----------------NVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred Hhcc-----------------cHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHHHHHHhc
Confidence 7543 3333444443 4678899988888887664 6899999999999999999988654
Q ss_pred hhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHH
Q 037414 298 LSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377 (577)
Q Consensus 298 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 377 (577)
-|+..|..++..+.+.|.+++-.+++....++ .-.|.+. +.||-+|++.+++.+-++++. -||..-.
T Consensus 1131 ------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i 1197 (1666)
T KOG0985|consen 1131 ------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANI 1197 (1666)
T ss_pred ------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhH
Confidence 26678999999999999999999988877554 5556554 578999999999999887764 3777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
..+..-|...|.++.|.-++..+ +.|..|...+...|.+..|...-+
T Consensus 1198 ~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1198 QQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888888888888888777643 466777777777777777765543
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.38 E-value=3.8e-05 Score=69.63 Aligned_cols=118 Identities=9% Similarity=0.058 Sum_probs=87.6
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCC--HHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA-CRIHKN--VDLA 393 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 393 (577)
.++.+++...++..++. -+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566666666666542 2445777888888888888888888888877 4455 45566666665 356666 4888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++++++++.+|+++.++..+...+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 888888888888888888888888888888888888888887644
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.37 E-value=0.00011 Score=75.17 Aligned_cols=166 Identities=18% Similarity=0.273 Sum_probs=88.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhh--HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVIS--WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
|.+......+.+|..+++.+++.++.+ |..+...|+..|+++.|.++|.+.- .|+-.|..|.+.|.++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 334444555666666666555433332 4445556666666666666664431 13334555666666666
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh---------------------------HH
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG---------------------------LW 377 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~---------------------------~~ 377 (577)
|.++-.+.. |-......|-+-..-+-+.|++.+|++++-.++ .|+.. |-
T Consensus 810 a~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 810 AFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 655554432 333444455444455555555555555555444 33321 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
..+..-+...|+...|+..|-+ ..-|..-+++|...+.|++|.++-+.
T Consensus 886 ~~f~~e~e~~g~lkaae~~fle--------a~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLE--------AGDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHh--------hhhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 2233333444444444443322 23466778888888999988887653
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.00011 Score=76.11 Aligned_cols=286 Identities=12% Similarity=0.098 Sum_probs=183.0
Q ss_pred CCHHHHHHHHH--HHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCCc
Q 037414 90 TNLIVANKLLY--IYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC-G--------MQLDS 158 (577)
Q Consensus 90 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 158 (577)
-|..+-.++++ .|..-|++|.|.+-..-++ +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 35666667664 5778899999988877765 4567999999999998888887777666431 1 1232
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc
Q 037414 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL 238 (577)
Q Consensus 159 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~ 238 (577)
.+=.-+.-.....|.+++|+.+|.+-.+. ..|=..|-..|++++|.++-+.= |.+.
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~---DRiH------------ 856 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETK---DRIH------------ 856 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhc---ccee------------
Confidence 22223333356778999999999987764 33456788899999999886532 2211
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC-----------------------CChhhHHHHHHHHHHcCChHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----------------------KNVISWSAMIAAYGYHGQGKKALDLFP 295 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~ 295 (577)
=..+|.....-+-..++.+.|++.|++... +|...|.-....+-..|+.+.|+.+|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 112444555556667888888888877542 344445555555666778888887777
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh
Q 037414 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375 (577)
Q Consensus 296 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 375 (577)
.... |-+++...|-.|+.++|-++-++- -|......|...|-..|++.+|..+|.+..
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq------ 994 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRAQ------ 994 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH------
Confidence 6653 445666667778888887776644 233444567788888888888888887752
Q ss_pred HHHHHHHHHHhcCCHH---------------HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 376 LWGALLGACRIHKNVD---------------LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~---------------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
++...|+.|..++--+ .|-++|++. +....-.+..|-++|.+.+|+++-
T Consensus 995 afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 995 AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHH
Confidence 2333444444333222 222222221 112334556788888888887763
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=8.2e-05 Score=68.32 Aligned_cols=394 Identities=10% Similarity=-0.021 Sum_probs=217.3
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC----hHHHHHHHHHHHHcCCCCCHHHHHH-
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN----IFQIRQVHAQIVAGGTLTNLIVANK- 97 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~----~~~a~~~~~~~~~~g~~~~~~~~~~- 97 (577)
+++.+-.+.+..+++.|++++..-.+. .|....=.++|.-|-- +..|...++++-.. .|...-|.-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 445566667777888888877665544 4433334445555543 66677777777543 233222221
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCC-CcchHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 98 LLYIYALHKALTDAHALFNGMKER-DSVSWSVMVG--GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
-...+-+.+.+.+|+++...|... +...-..-+. ..-+.+++..+..+.++....| +..+.+......-+.|+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 123344677888999988888763 2222111122 2334677778888877766432 334444444444678999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc---CCCC----cc--------
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA---NKFL----LD-------- 239 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~---~g~~----~~-------- 239 (577)
+.|.+-|+...+-+--.....||.-+ +..+.|+.+.|.+...++.++++....-+--| .|+. .|
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999998877754333345666544 45567889999988877754322110000000 0000 00
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 240 -VILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 240 -~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
+..+|.-...+.+.|+.+.|.+.+-.|+. .|++|...+.-.- ..+++.+..+-+.-+...+. ....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 22344445557789999999999999974 4677765553322 24455555555555555533 3457899999
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCC-CCHHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCC--HhHHHHHHHHHHhcCC
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVR-PDVKHYTCMVDLLGR-AGRLDEALKLIESMSVEKD--EGLWGALLGACRIHKN 389 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~ 389 (577)
-.||+..-++.|-.++.+-.. ...+ .+...|+ |++++.- .-..++|++-++.+...-. ......-+.--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999888887764321 1111 1233333 3333332 3456667665555410000 0011111111111221
Q ss_pred ---HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 ---VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+.+-+++.+++.-+ ....-...|.+..++..+.++|..-.+
T Consensus 396 d~a~R~ai~~Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11222333344433221 334455678889999999999977654
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=7.9e-05 Score=81.58 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=171.3
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC--------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-c
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKER--------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-Y 159 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 159 (577)
+.+...|-.-|......++.+.|++++++.... -...|.+++..-..-|.-+...++|++..+.. |+ .
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHH
Confidence 566778988999999999999999999987642 24468888888888888889999999998852 33 3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
.|..|...|.+.+..++|-++++.|.+. +.....+|...++.+.+..+-+.|..++.+..+--+ -.-.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP-----------k~eH 1599 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP-----------KQEH 1599 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc-----------hhhh
Confidence 4778888899999999999999999886 446788999999999999999999999887643100 0113
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH--HHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI--TFVSLLY 314 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~ 314 (577)
.......+.+-.++|+.+.++.+|+.... +-.-.|+..|+.-.++|+.+.+..+|++....++.|-.. .|.-.+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 44556677788899999999999999874 345689999999999999999999999999988777543 3444443
Q ss_pred HHhccCC
Q 037414 315 ACSHTGL 321 (577)
Q Consensus 315 a~~~~g~ 321 (577)
.=.+.|+
T Consensus 1680 yEk~~Gd 1686 (1710)
T KOG1070|consen 1680 YEKSHGD 1686 (1710)
T ss_pred HHHhcCc
Confidence 3333343
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=5.1e-05 Score=71.39 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hh---hHHHHHHHHHHc--------CChHHHHHHHHHhhhCCCCCCH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VI---SWSAMIAAYGYH--------GQGKKALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~ 306 (577)
..+..+..+|.+.|++++|...|+++.+ |+ .. .+..+...+.+. |+.++|.+.|+++... .|+.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 148 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNS 148 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCC
Confidence 4678889999999999999999999864 32 22 455555666654 7789999999999875 3443
Q ss_pred H-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHhHHHHH
Q 037414 307 I-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM----SVEK-DEGLWGAL 380 (577)
Q Consensus 307 ~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~l 380 (577)
. ....+... +... ... . .....+...|.+.|++++|...+++. +-.| ....|..+
T Consensus 149 ~~~~~a~~~~----~~~~------~~~-~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l 209 (235)
T TIGR03302 149 EYAPDAKKRM----DYLR------NRL-A--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARL 209 (235)
T ss_pred hhHHHHHHHH----HHHH------HHH-H--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHH
Confidence 2 22111111 0000 000 0 11124556788999999999988887 2223 24588889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
..++...|+.++|...++.+....|
T Consensus 210 ~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 210 VEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999888877665
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.34 E-value=4.5e-05 Score=81.82 Aligned_cols=131 Identities=11% Similarity=0.067 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNR-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCM 348 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 348 (577)
+..+-.|.....+.|.+++|..+++...+ +.||. .....+...+.+.+.+++|....+..+. ..|+ ......+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~ 160 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLE 160 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence 44455555555566666666666666555 24443 2344455556666666666666665542 2332 4444555
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 349 VDLLGRAGRLDEALKLIESMS-VEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
..++.+.|++++|..+|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 555666666666666666651 2232 345555666666666666666666666655433
No 108
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.32 E-value=0.00032 Score=71.96 Aligned_cols=289 Identities=12% Similarity=0.109 Sum_probs=197.6
Q ss_pred HHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 037414 100 YIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRL 179 (577)
Q Consensus 100 ~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 179 (577)
.-+...|+++.|..-|-+.. ..-..|.+......+.+|+.+++.+..... -.-.|..+.+-|+..|+++.|.+
T Consensus 714 ~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~ 786 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEE 786 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHH
Confidence 33445688888888775432 122345566778899999999998887533 34457788888999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHH
Q 037414 180 IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSA 259 (577)
Q Consensus 180 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A 259 (577)
+|.+. + .++-.|++|.+.|++++|.++-.+...|.. ....|-+-..-.-+.|++.+|
T Consensus 787 lf~e~---~------~~~dai~my~k~~kw~da~kla~e~~~~e~--------------t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 787 LFTEA---D------LFKDAIDMYGKAGKWEDAFKLAEECHGPEA--------------TISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHHhc---c------hhHHHHHHHhccccHHHHHHHHHHhcCchh--------------HHHHHHHhHHhHHhhcchhhh
Confidence 98643 2 356688999999999999999888765432 334566666777789999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
.++|-.+..|+. .|..|-++|..+..+++..+-.-. .-..|-..+..-+...|++..|..-|-+.-
T Consensus 844 eqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~------ 909 (1636)
T KOG3616|consen 844 EQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------ 909 (1636)
T ss_pred hheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh------
Confidence 999998888874 578899999999998888764321 112455667777888899999988777652
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---C-CHhHHHHH------HHHHHhcCCHHH-------------HHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESMSVE---K-DEGLWGAL------LGACRIHKNVDL-------------AEMA 396 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---p-~~~~~~~l------l~~~~~~g~~~~-------------a~~~ 396 (577)
-|.+-+.+|-..+.|++|.++-+.-+-. . -...|..- +..+.++|-.+. |..+
T Consensus 910 ----d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdl 985 (1636)
T KOG3616|consen 910 ----DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDL 985 (1636)
T ss_pred ----hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHH
Confidence 2566778888888999998887665211 0 11133221 122334444333 3333
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.+-..+.. -+....-+..-+...|++++|.+-+-+..+.+
T Consensus 986 ari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 986 ARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 33332222 23345556667788899999988777666544
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.29 E-value=1.3e-05 Score=68.58 Aligned_cols=90 Identities=11% Similarity=-0.083 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
.+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+.+|.++.++..+..++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3445555666666666666555 3333 3445566666666666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhh
Q 037414 425 QDVAKIRDLMTR 436 (577)
Q Consensus 425 ~~A~~~~~~m~~ 436 (577)
++|...++...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.28 E-value=0.00013 Score=79.17 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
.+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 445566666666777777766666654 3455666666666666 666666666665432 334
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
..++..+.++|..++.. .|+ ...+--+.. ++...++...-..++-.+-..|...++++++..++
T Consensus 182 ~kq~~~~~e~W~k~~~~---~~~d~d~f~~i~~------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY---NSDDFDFFLRIER------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred hhcchHHHHHHHHHHhc---CcccchHHHHHHH------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 45666666666666531 222 111111111 11112222334556777778889999999999999
Q ss_pred HHHHhcCCCCchhHHHHHHHHh
Q 037414 398 KSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 398 ~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
+.+++.+|.|..+..-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 9999999999888888888887
No 111
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.0002 Score=69.83 Aligned_cols=217 Identities=13% Similarity=0.085 Sum_probs=139.1
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQ---KNVISWSAMI 278 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li 278 (577)
+...++.++|..+.+++.+.++. +..+|+....++.+.| ++++++..++++.+ ++...|+...
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 33445666666666665543332 2234444444555556 56788888877664 4455676555
Q ss_pred HHHHHcCCh--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc-
Q 037414 279 AAYGYHGQG--KKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA- 355 (577)
Q Consensus 279 ~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 355 (577)
..+.+.|+. ++++.+++++.+.. +-|..++....-++...|+++++.+.++.+++. + ..+...|+...-.+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhcc
Confidence 555555653 66788888887653 235667777777777778888888888888754 2 23345555544444433
Q ss_pred --CCH----HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC-
Q 037414 356 --GRL----DEALKLIESM-SVEK-DEGLWGALLGACRIH----KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG- 422 (577)
Q Consensus 356 --g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 422 (577)
|.. +++.+...++ ...| |...|+-+...+... +...+|...+.++.+.+|+++.+...|+..|....
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhc
Confidence 222 4556665343 4456 566888888888773 34567888999988888999999999999998643
Q ss_pred -----------------ChhHHHHHHHHHh
Q 037414 423 -----------------RWQDVAKIRDLMT 435 (577)
Q Consensus 423 -----------------~~~~A~~~~~~m~ 435 (577)
..++|.++++.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 2356777777773
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.001 Score=65.69 Aligned_cols=116 Identities=19% Similarity=0.183 Sum_probs=70.2
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 394 (577)
...|+.++|+..++.+++. .+-|........+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 3456666666666666542 2233444455556666666666666666666 44554 335555566666666666666
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.+++.....+|+++..|..|..+|...|+..++.....++
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 6666666666666666666666666665555555544443
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=5.7e-05 Score=64.69 Aligned_cols=121 Identities=13% Similarity=0.070 Sum_probs=94.6
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 037414 292 DLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-S 369 (577)
Q Consensus 292 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 369 (577)
.+|++..+ +.|+. +..+..++...|++++|...|+..+. +.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555554 34443 44566777888999999999998874 344 5778888888999999999999999888 4
Q ss_pred CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 370 VEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 370 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
..| +...|..+..++...|+.++|+..++++++..|+++..+.....+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 455 56688888889999999999999999999999999888876665543
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=0.00015 Score=65.81 Aligned_cols=156 Identities=10% Similarity=0.115 Sum_probs=120.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
.-+-.|...|+++......+.+..+. . .|...++.+++...+++..+.. +.|...+..+...|...|++++
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 34667999999998876665443321 0 1223567788888888877753 5577789999999999999999
Q ss_pred HHHHHHHhhHhcCCCC-CHHHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRP-DVKHYTCMVDL-LGRAGR--LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
|...|+...+ +.| +...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999974 445 57777888876 467787 59999999998 4556 55688888889999999999999999
Q ss_pred HHHhcCCCCchhHH
Q 037414 399 SLLERQPQNPGHYV 412 (577)
Q Consensus 399 ~~~~~~p~~~~~~~ 412 (577)
++++..|++..-+.
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999988765443
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=6.2e-05 Score=77.34 Aligned_cols=234 Identities=11% Similarity=0.069 Sum_probs=139.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 168 (577)
+|--..--.+...+.+.|-...|..+|++. ..|.-.|-.|+..|+..+|..+..+-.+ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 333344455666777777777777777664 3566677777777777777777666665 356777777776666
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
....-++.|.++.+..-.. .-..+.....+.++++++.+.|+.-.+-++. -..+|-.+..
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-------------q~~~wf~~G~ 527 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-------------QLGTWFGLGC 527 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-------------chhHHHhccH
Confidence 5555556666555543221 1111222223356777777777665443221 3445666666
Q ss_pred HHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
++.++++++.|.+.|..-.. || ..+||.+-.+|.+.|+-.+|...+.+..+.+ .-+...+-..+....+.|.+++|
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 67777777777777776542 43 4567777777777777777777777777665 32333444444555667777777
Q ss_pred HHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 326 LRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
++.+.++........|..+-..++.
T Consensus 607 ~~A~~rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 607 IKAYHRLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred HHHHHHHHHhhhhcccchhhHHHHH
Confidence 7777766543222334444444443
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2e-06 Score=53.46 Aligned_cols=35 Identities=23% Similarity=0.565 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 037414 124 VSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS 158 (577)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 158 (577)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 117
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.009 Score=60.52 Aligned_cols=329 Identities=12% Similarity=0.098 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHH--HHHHHH--hCCChhHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSV--MVGGFS--KVADFINCFETFRE 148 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~--li~~~~--~~g~~~~A~~~~~~ 148 (577)
+++|.+....++..+ +.+...+..=+-+....+++++|+++.+.-... .+++. +=.+|| +.+..++|+..++
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 888999999988876 666666666677778889999999777654321 12222 234444 5788999999887
Q ss_pred HHHCCCCCCcc-hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH
Q 037414 149 FIRCGMQLDSY-TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDI-DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226 (577)
Q Consensus 149 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 226 (577)
|..++.. +...-...|-+.++++++..+|+.+.+.+.+. |...-..++.+-. .-.+. +.+..+.....+
T Consensus 104 ----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 104 ----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred ----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcch
Confidence 4444433 55555566889999999999999998876432 2222222222211 11111 333333322112
Q ss_pred HHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc--------CCC-----hhh-----HHHHHHHHHHcCChH
Q 037414 227 WTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR--------QKN-----VIS-----WSAMIAAYGYHGQGK 288 (577)
Q Consensus 227 ~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~--------~~~-----~~~-----~~~li~~~~~~g~~~ 288 (577)
-..+-...-.+...|++.+|+++++... +.| ... ---|.-.+...|+..
T Consensus 175 -------------yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 175 -------------YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred -------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 2223334556778999999999999872 111 111 223455677899999
Q ss_pred HHHHHHHHhhhCCCCCCHH----HHHHHHHHHhccCCHHH--HHHHHHHhhHhc----------CCCCCHHHHHHHHHHH
Q 037414 289 KALDLFPMMLSSRVLPNRI----TFVSLLYACSHTGLVEE--GLRLFSSMWDDF----------AVRPDVKHYTCMVDLL 352 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~ 352 (577)
+|..++...+... .+|.. .-|.|+ +...-.++-. +...++...... .-.....--++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998874 44442 222233 2222222111 111222111000 0001112223444444
Q ss_pred HHcCCHHHHHHHHHhCC-CCCCHhHHHHHHHHHH-h-cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhccCChhHHH
Q 037414 353 GRAGRLDEALKLIESMS-VEKDEGLWGALLGACR-I-HKNVDLAEMAAKSLLERQPQN-PGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~-~-~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~ 428 (577)
.+..+.+.++-...+ ..|.. .+..++..+. . ......+.+++....+..|.+ ......++.....+|+++.|.
T Consensus 320 --tnk~~q~r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 --TNKMDQVRELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhhHHHHHHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 455677777777774 33433 4445554432 2 224777888888888888887 445566777788999999999
Q ss_pred HHHH
Q 037414 429 KIRD 432 (577)
Q Consensus 429 ~~~~ 432 (577)
+++.
T Consensus 397 ~il~ 400 (652)
T KOG2376|consen 397 EILS 400 (652)
T ss_pred HHHH
Confidence 9998
No 118
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=6.8e-05 Score=75.10 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=71.4
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 211 (577)
-+.++|+..+|.-.|+..++... -+...|..|-...+..++-..|...+.+.++.. +.+..+.-+|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 46788999999999998887632 267788888888888888889999999998875 5578888899999999999999
Q ss_pred HHHHHhhC
Q 037414 212 ARQLFDQM 219 (577)
Q Consensus 212 A~~~~~~m 219 (577)
|.+.++.-
T Consensus 372 Al~~L~~W 379 (579)
T KOG1125|consen 372 ALKMLDKW 379 (579)
T ss_pred HHHHHHHH
Confidence 99988764
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.19 E-value=5e-05 Score=64.19 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
....-.+...+...|++++|.++|+-+ .+.| +...|-.|...|...|++++|+..+..+..++|++|.++..+..+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445556677899999999999988 4456 55688889999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
..|+.+.|.+.|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988764
No 120
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.2e-06 Score=52.52 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999987
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00031 Score=69.33 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF-VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVD 350 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 350 (577)
.+....-.+...|++++|+..++.+... .||...| ......+...++.++|.+.++.++ ...|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHH
Confidence 3334444556789999999999998875 5555544 455678899999999999999997 45676 555667788
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+|.+.|++.+|.+++++. ...-|+..|..|..+|...|+..++.... ...|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999987 33347779999999999999988876553 45677899999999
Q ss_pred HHHHHHhhCC
Q 037414 429 KIRDLMTRRR 438 (577)
Q Consensus 429 ~~~~~m~~~g 438 (577)
..+....++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9998887654
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.0004 Score=63.16 Aligned_cols=154 Identities=13% Similarity=0.118 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
...-..+...|+-+....+..+.... ..-|......+.....+.|++.+|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666555555553322 122333333455566666666666666666642 344556666666666666
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 355 AGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
.|++++|..-|.+. .+.| +....+.|...+.-.|+.+.|..++.......+.++..-..|.......|++++|.++.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666655554 3333 33455566666666666666666666666666656666666666666666666666554
No 123
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.002 Score=60.89 Aligned_cols=176 Identities=9% Similarity=0.029 Sum_probs=95.3
Q ss_pred HHHHHcCCChHHHHHHHhcCCCC---CcchHHH-HHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh
Q 037414 99 LYIYALHKALTDAHALFNGMKER---DSVSWSV-MVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI 174 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 174 (577)
+.-+....++..|+.+++--..- ...+-+. +...+.+.|++++|+..+....+. -.|+...+..|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 44455667888888887644321 1112222 334667789999999998887775 345555565555555556777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG 254 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g 254 (577)
.+|+++-... +.++-....|...--+.|+-++-..+-+.+.. ...---+|..+....-
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----------------~~EdqLSLAsvhYmR~ 165 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----------------TLEDQLSLASVHYMRM 165 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----------------hHHHHHhHHHHHHHHH
Confidence 7777765432 33333444555666677777666655544432 1111223444444445
Q ss_pred CHHHHHHHHHhccC--CChhhHHH-HHHHHHHcCChHHHHHHHHHh
Q 037414 255 SIDSAREIFDRMRQ--KNVISWSA-MIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 255 ~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m 297 (577)
.+++|.+++.++.. |+....|. |.-+|.+..-++-+.+++.--
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 56667777766654 32233332 222334444444444444433
No 124
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.08 E-value=0.00014 Score=72.33 Aligned_cols=127 Identities=14% Similarity=0.170 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCC
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK 172 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 172 (577)
....+|+..+...++++.|..+|+++.+.++..+-.++..+...++..+|++++++..+.. +-|...+......+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3455666777778999999999999999888888889999999999999999999998752 225555666666788999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (577)
+.+.|..+.+++++.. |.+..+|..|..+|.+.|+++.|+..++.++-
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999874 55677999999999999999999999999873
No 125
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=6.5e-06 Score=50.77 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 156 (577)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.06 E-value=0.0011 Score=70.60 Aligned_cols=132 Identities=11% Similarity=0.034 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-Ccch--HHHHH
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL-DSYT--LPFVI 165 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t--~~~ll 165 (577)
...|..|-..|....+...|.+.|+...+- |..++......|++..+++.|..+.-..-+. .| -... |..+-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 357888888888888888999999887653 6778999999999999999998883222221 11 1112 22222
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 226 (577)
-.+.+.++...+..-++...+.. |.|...|..|..+|..+|++..|.++|++...-++.+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 23667788888888888877765 6688999999999999999999999998876655444
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.05 E-value=0.00043 Score=62.96 Aligned_cols=134 Identities=19% Similarity=0.125 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHH
Q 037414 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGAL 380 (577)
Q Consensus 303 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 380 (577)
.|+......+-.++...|+-+....+...... .-..+......++....+.|++.+|...|++. .-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44433225566777788888888888777642 33445566667899999999999999999998 434578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+|-+.|+.+.|...+.+++++.|.++..++.|...|.-.|+++.|..++..-...+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998876544
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.05 E-value=0.012 Score=55.58 Aligned_cols=302 Identities=10% Similarity=0.011 Sum_probs=191.0
Q ss_pred CCHHHHHHH---HHHHHcCCChHHHHHHHhcCCCCCcchHHHHH---HHHHhCCChhHHHHHHHHHHHCCCCCC------
Q 037414 90 TNLIVANKL---LYIYALHKALTDAHALFNGMKERDSVSWSVMV---GGFSKVADFINCFETFREFIRCGMQLD------ 157 (577)
Q Consensus 90 ~~~~~~~~l---i~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~------ 157 (577)
.|+..|-++ ...|...|+-..|+.-|++..+--+.-+.+-| ..+.+.|.+++|..=|+..+.....-+
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaq 146 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQ 146 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 344444444 34566677777777777666543222333333 357789999999999999887532111
Q ss_pred ------cc--hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHH
Q 037414 158 ------SY--TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTV 229 (577)
Q Consensus 158 ------~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 229 (577)
.. .....+..+...|+...|......+++.. +.|...+..-..+|...|++..|..=+....+-.
T Consensus 147 skl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs------ 219 (504)
T KOG0624|consen 147 SKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS------ 219 (504)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc------
Confidence 11 12233445667899999999999998875 6799999999999999999999987665543311
Q ss_pred HHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 230 MIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 230 ~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
..++...--+-..+...|+.+.++...++..+-|+..-. +|..-....+..+.++.|.+
T Consensus 220 -------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~----Cf~~YKklkKv~K~les~e~---------- 278 (504)
T KOG0624|consen 220 -------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL----CFPFYKKLKKVVKSLESAEQ---------- 278 (504)
T ss_pred -------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh----HHHHHHHHHHHHHHHHHHHH----------
Confidence 124555666778888999999999998887763332211 11111122333333333332
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLG 382 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 382 (577)
....+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++.-.+. .+.|| +.++.-=..
T Consensus 279 ------~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 279 ------AIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred ------HHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 12334444555555555432 333 233445566777888888888877766 56665 557777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|.....++.|+.-|+.+.+.++++..+-.- .+.|.++.+...+++
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~~reG----------le~Akrlkkqs~kRD 395 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTRAREG----------LERAKRLKKQSGKRD 395 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHhccch
Confidence 8888888999999999999998887643222 345555555544443
No 129
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.04 E-value=0.019 Score=57.66 Aligned_cols=375 Identities=13% Similarity=0.157 Sum_probs=215.3
Q ss_pred CCCChhhHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC--CcchHHHHHH
Q 037414 56 RSVDPKFFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER--DSVSWSVMVG 131 (577)
Q Consensus 56 ~~p~~~~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~--~~~~~~~li~ 131 (577)
++.|..+|..+++-... .++++..++++... ++.++..|..-|..-.+..+++...++|.+.... +...|..-|+
T Consensus 16 nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CCccHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 45688899999987776 89999999999864 4667888999999999999999999999987654 7778888886
Q ss_pred HHHh-CCChh----HHHHHHHHHH-HCCCCCCcc-hHHHHHHH---------HhcCCChHHHHHHHHHHHHcCCCCcHHH
Q 037414 132 GFSK-VADFI----NCFETFREFI-RCGMQLDSY-TLPFVIRA---------CRDRKDIVMGRLIHDIVLKSGLDIDQFV 195 (577)
Q Consensus 132 ~~~~-~g~~~----~A~~~~~~m~-~~g~~p~~~-t~~~ll~~---------~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 195 (577)
.--+ +|... ...+.|+-.. +.|+.+-.. .|+.-+.. +....+++..++++++++..-+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4333 23322 2233344333 445544332 23433332 2334456677888888875432222333
Q ss_pred HHHHHH------H-------HHhCCCHHHHHHHHhhCCC------CCh---------------hHHHHHHhc--------
Q 037414 196 CAALVD------M-------YAKCKVIDDARQLFDQMPT------RDL---------------VTWTVMIGA-------- 233 (577)
Q Consensus 196 ~~~li~------~-------~~~~g~~~~A~~~~~~m~~------~~~---------------~~~~~~i~~-------- 233 (577)
|+-... . --+...+-.|+++++++.. ++. ..|--+|.=
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 322211 0 0112335556666665421 111 114222221
Q ss_pred --------------------CCCCcchhhHH-----HHHHHHHhcCC-------HHHHHHHHHhcc--------------
Q 037414 234 --------------------NKFLLDVILGT-----AVIDMYAKCGS-------IDSAREIFDRMR-------------- 267 (577)
Q Consensus 234 --------------------~g~~~~~~~~~-----~Li~~~~~~g~-------~~~A~~~~~~~~-------------- 267 (577)
.+..|++.... ..-+.+...|+ -+++..+++...
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111000 00011111222 122223332221
Q ss_pred ------------------------C----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhc
Q 037414 268 ------------------------Q----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSH 318 (577)
Q Consensus 268 ------------------------~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 318 (577)
. .-..+|...+..-.+..-...|..+|.+..+.+..+ +...+++++.-+|
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c- 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC- 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-
Confidence 1 112345556666666666777888888888777777 5666677777665
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKD--EGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a 393 (577)
.++.+-|.++|+.=++++|- +..--...++-+...++-..|..+|++. .+.|| ..+|..+|..-..-|+...+
T Consensus 414 skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46777888888877665443 3334456677777778878888888777 22333 34888888888888888888
Q ss_pred HHHHHHHHhcCCCC----chhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 394 EMAAKSLLERQPQN----PGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 394 ~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
..+-++.....|.+ ...-..+++-|.-.+.+..-..-++.|
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 88877776655521 123345566666666555444444433
No 130
>PLN02789 farnesyltranstransferase
Probab=98.03 E-value=0.002 Score=62.93 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=16.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
|..+|+-....+...|+++++++.++++++.
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.02 E-value=0.0017 Score=69.24 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHhHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEGLWG 378 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~ 378 (577)
.+|..+--.|....+++.|...|.... .+.|+ ...|-...-.....|+.-++..+|..- +-.|+...|-
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~ 927 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWL 927 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHH
Confidence 344444444555667888888888774 45554 444444444444567777777777652 3345666665
Q ss_pred HHHHHHHhcCCHHHHHH----------HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 379 ALLGACRIHKNVDLAEM----------AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~----------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
....-...+|+.++-+. ..++.....|+...+|........+.+.+++|.....+..
T Consensus 928 c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 928 CATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555566666555444 3444455678888899999888888888888887766543
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=0.00011 Score=62.34 Aligned_cols=101 Identities=22% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 338 VRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 338 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++.+.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 344556667777888888888888776 3344 556777777778888888888888888888888888888888
Q ss_pred HHHHhccCChhHHHHHHHHHhhCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+|...|++++|.+.++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888887776543
No 133
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.01 E-value=9.3e-06 Score=50.05 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00022 Score=71.02 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
-.....|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++.+.... .+-|......-...|.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 3444567777778899999999999998877777777888888899999999999998865 233555666666778899
Q ss_pred CCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMSVEK 372 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 372 (577)
++.+.|.++.+++.+ ..|+ ..+|..|...|.+.|++++|+-.++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999973 4565 5699999999999999999999999987554
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00068 Score=70.62 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=165.5
Q ss_pred CCCcchHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc--------CC
Q 037414 120 ERDSVSWSVMVG--GFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS--------GL 189 (577)
Q Consensus 120 ~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g~ 189 (577)
.-|..+-.+++. -|..-|+.+.|.+-.+..+. ...|..+.+.|.+..+++-|+-.+..|... ..
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 347777777774 57788999999888877654 367999999999999998887777665532 11
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-
Q 037414 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ- 268 (577)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~- 268 (577)
+.+...-....-.....|.+++|..+|++.+.-| .|=..|-..|.+++|.++-+.--+
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------------------LlNKlyQs~g~w~eA~eiAE~~DRi 855 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD---------------------LLNKLYQSQGMWSEAFEIAETKDRI 855 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------------------HHHHHHHhcccHHHHHHHHhhccce
Confidence 1111233333444567899999999999887643 345667889999999988765432
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-------------------CCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR-------------------VLPNRITFVSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------------~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 329 (577)
.=-.||..-...+-..++.+.|++.|++..... -.-|...|.--...+...|+++.|..++
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 111245555555566777778877776542210 0122333333344455667778887777
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
.... -|-+++...+-.|+.++|-++-++-+ |....-.|.+-|...|++.+|..+|.++.
T Consensus 936 ~~A~----------D~fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAK----------DYFSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhh----------hhhhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7663 25577777788899999999888865 66666678888999999999998888764
No 136
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.015 Score=58.27 Aligned_cols=370 Identities=11% Similarity=0.029 Sum_probs=208.5
Q ss_pred hhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHcCC
Q 037414 29 ALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVA-GGTLTN-LIVANKLLYIYALHK 106 (577)
Q Consensus 29 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~-~g~~~~-~~~~~~li~~~~~~g 106 (577)
+....|+++.|+..|....... +++...|+.=..+.+........+....+ ..+.|+ +--|+-+-.++.-.|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~------p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS------PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC------CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 4567899999999999887651 23444454444444443333333333322 234454 557888888888899
Q ss_pred ChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHH---HHHHHHHHC---CCCCCcchHHHHHHHHhcC------
Q 037414 107 ALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCF---ETFREFIRC---GMQLDSYTLPFVIRACRDR------ 171 (577)
Q Consensus 107 ~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~t~~~ll~~~~~~------ 171 (577)
++++|+.-|.+-.+. |...++.+..++.......+.. .++...... ........|..++...-+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999987653 5556777777762211000000 000000000 0000111233332222110
Q ss_pred -CChHHHHHHHHHHHHc--------C-------CCC------------c----------HHHHHHHHHHHHhCCCHHHHH
Q 037414 172 -KDIVMGRLIHDIVLKS--------G-------LDI------------D----------QFVCAALVDMYAKCKVIDDAR 213 (577)
Q Consensus 172 -~~~~~a~~~~~~~~~~--------g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~ 213 (577)
.+.+...+.+..+... | ..| | ..-...|.++..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 0111112222111110 0 011 0 011234455555566666666
Q ss_pred HHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh---h-------hHHHHHHHHHH
Q 037414 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV---I-------SWSAMIAAYGY 283 (577)
Q Consensus 214 ~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~li~~~~~ 283 (577)
+-++...+-+ .+..-++....+|...|.+......-+...+..- . ....+..+|.+
T Consensus 245 q~y~~a~el~--------------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 245 QHYAKALELA--------------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHHHHhHh--------------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6665554422 1344455666667777766666555554433111 1 12223345666
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHH-------------------------HHHHHHHhccCCHHHHHHHHHHhhHhcCC
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITF-------------------------VSLLYACSHTGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~-------------------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 338 (577)
.++++.|+..|.+....-..||..+= ..-...+.+.|++..|...+.++++. -
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~ 388 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--D 388 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--C
Confidence 67777777777776554444443321 11134456779999999999999864 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
+-|...|.-..-+|.+.|.+..|++-.+.. ...|+. ..|.-=..++....+++.|.+.|++.++.+|.+...-..+.+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 446788998999999999999998876655 445543 356555666777789999999999999999998776655555
Q ss_pred HHhc
Q 037414 417 VYAN 420 (577)
Q Consensus 417 ~~~~ 420 (577)
++..
T Consensus 469 c~~a 472 (539)
T KOG0548|consen 469 CVEA 472 (539)
T ss_pred HHHH
Confidence 5543
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0056 Score=55.90 Aligned_cols=84 Identities=17% Similarity=0.170 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHHHhccCC-ChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 250 YAKCGSIDSAREIFDRMRQK-NVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
+.+..+.+-|.+.+++|.+- +..+.+.|..++.+ .+...+|.-+|++|-+. ..|+..+.+....++...|++++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 33444444455555554442 22233333333322 22344455555554432 34444445444444555555555
Q ss_pred HHHHHHHhhH
Q 037414 325 GLRLFSSMWD 334 (577)
Q Consensus 325 a~~~~~~m~~ 334 (577)
|..+++..+.
T Consensus 226 Ae~lL~eaL~ 235 (299)
T KOG3081|consen 226 AESLLEEALD 235 (299)
T ss_pred HHHHHHHHHh
Confidence 5555554443
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.95 E-value=0.0011 Score=71.53 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=114.6
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLL 313 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 313 (577)
.++..+-.|.......|.+++|+.+++...+ || ...+..++..+.+.+++++|+..+++.... .|+ ......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 3677888999999999999999999999875 54 556778899999999999999999999885 455 44566777
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALL 381 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 381 (577)
.++.+.|+.++|..+|+++... ..-+...+..+...+...|+.++|...|++. ...|....|+..+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 7889999999999999999852 2234778888899999999999999999988 3345555555544
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0043 Score=56.59 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=63.7
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG----RAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
+..+++-|.+.++.|.+ + .+..+.+-|..++. -.+.+.+|.-+|++| +..|+..+.+-...++...|+++
T Consensus 149 k~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e 224 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE 224 (299)
T ss_pred HHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence 44455555555555531 1 12223333333322 234566666677666 24566666666666666677777
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH-HHHHHHHh
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV-AKIRDLMT 435 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (577)
+|+.+++.++..+++++.+...++-.-...|+..++ .+.+.+++
T Consensus 225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777777777777777666666666666666655443 33444444
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.0027 Score=69.24 Aligned_cols=235 Identities=9% Similarity=0.067 Sum_probs=159.0
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKE--RD-SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 165 (577)
+.+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 34567888999999999999999999886544 33 22333333366666765555444 334
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
.......++..+..++..+.+. ..+...+..|..+|-+.|+.++|..+++++.+-|+ .|+.+.|.
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-------------~n~~aLNn 155 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-------------DNPEIVKK 155 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-------------ccHHHHHH
Confidence 4444444555555555566654 34556888899999999999999999999987653 37888999
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhccCCHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI-TFVSLLYACSHTGLVEE 324 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 324 (577)
+...|+.. ++++|.+++.+... .|....++.++.++|.++... .|+.. .|..++.
T Consensus 156 ~AY~~ae~-dL~KA~~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~---------- 211 (906)
T PRK14720 156 LATSYEEE-DKEKAITYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIER---------- 211 (906)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHH-----------HHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHH----------
Confidence 99999999 99999998877533 377778999999999999875 33333 2222222
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
.+....+..--+.++-.+..-|-..++++++..+++.+ ...| |.....-++..|.
T Consensus 212 ------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 ------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22222233333455556667777888888998888887 4444 4445555555554
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.81 E-value=2.6e-05 Score=46.80 Aligned_cols=31 Identities=26% Similarity=0.659 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 037414 124 VSWSVMVGGFSKVADFINCFETFREFIRCGM 154 (577)
Q Consensus 124 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 154 (577)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0025 Score=57.67 Aligned_cols=168 Identities=15% Similarity=0.139 Sum_probs=125.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH---HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAM---IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+|..+.-+...+|+.+.|...++.+.++-+-++... ..-+-..|++++|+++++.+.+.. +-|.+++..-+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 555667777889999999999999875333333322 122445799999999999999875 5567777766666667
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHH---HhcCCHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGAC---RIHKNVDLA 393 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~---~~~g~~~~a 393 (577)
.|.--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -+.|. ...+..+...+ ....+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7877788888877776 46788999999999999999999999999998 44564 34444454442 334467889
Q ss_pred HHHHHHHHhcCCCCchhHH
Q 037414 394 EMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~ 412 (577)
.+.+.+.++..|.+...+.
T Consensus 211 rkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHhChHhHHHHH
Confidence 9999999999996654443
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.79 E-value=0.00097 Score=56.42 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=84.5
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 037414 293 LFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV 370 (577)
Q Consensus 293 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 370 (577)
.|++.... .|+ ......+...+...|+.++|.+.++.+.+. .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555443 343 344556667778889999999999888643 2345677788888888899999999888877 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 371 EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 371 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
.| +...+..+...+...|+.+.|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4567777788888999999999999999999988764
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3e-05 Score=46.51 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 302 (577)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4677788888888888888888888777663
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.0004 Score=53.89 Aligned_cols=92 Identities=21% Similarity=0.244 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
+..+...+...|++++|.+++++. ...|+ ...+..+...+...++++.|...++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677788888888888776 33443 3567777777888888888888888888888888778888888888888
Q ss_pred ChhHHHHHHHHHhh
Q 037414 423 RWQDVAKIRDLMTR 436 (577)
Q Consensus 423 ~~~~A~~~~~~m~~ 436 (577)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00094 Score=54.89 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=57.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLG 382 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 382 (577)
+..+...+...|++++|.+.|..+.+.+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555556666666666666654321111 1234445566666666666666666655 22232 234555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.+...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6666677777777777777766665543
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.0017 Score=55.75 Aligned_cols=113 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDL 392 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 392 (577)
.++...+...++.+.++++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555544321110 0112222334455555555555555554 111222 122333444555555665
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
|+..++.. ...+..+..+..+.++|.+.|++++|...|+
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55555442 1122233445556666666666666666554
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0034 Score=56.79 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=110.6
Q ss_pred cCCHHHHHHHHHhccC--------CCh-hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHhccCCH
Q 037414 253 CGSIDSAREIFDRMRQ--------KNV-ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS-LLYACSHTGLV 322 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~ 322 (577)
..+.++..+++.++.. ++. ..|-.++-+....|+.+.|...++++... + |...-... -.--+-..|..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3466777777776652 222 22444455556677777777777777665 2 33221111 11123345777
Q ss_pred HHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
++|.++++..+++ -+.|..+|---+-..-..|+--+|++-+... .+..|...|.-+...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7888888777754 2334555555555555566655666555444 33457777888888888888888888888888
Q ss_pred HhcCCCCchhHHHHHHHHhccC---ChhHHHHHHHHHhhCC
Q 037414 401 LERQPQNPGHYVLLSNVYANAG---RWQDVAKIRDLMTRRR 438 (577)
Q Consensus 401 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g 438 (577)
+=..|.++..+..+...+...| +.+-|.+++.+-.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7777877777777777765554 3445666666655443
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.00078 Score=55.38 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHH
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLL 414 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 414 (577)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+.+..|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667778889999999999999988 33343 3466678888999999999999999999988775 5678889
Q ss_pred HHHHhccCChhHHHHHHHHHhhCCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
..++.+.|++++|.+.++++.+...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 9999999999999999999987653
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0024 Score=54.75 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNR--ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 356 (577)
..+...|++++|...|+........|+. .....+...+...|++++|...++... +-......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---DEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHCC
Confidence 3444455555555555555444311111 122223344444455555554443321 11112223334444444555
Q ss_pred CHHHHHHHHH
Q 037414 357 RLDEALKLIE 366 (577)
Q Consensus 357 ~~~~A~~~~~ 366 (577)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555544443
No 151
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.61 E-value=0.053 Score=53.33 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH-HHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFA-VRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLW-GALLGA 383 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~ll~~ 383 (577)
..|...+.+..+..-++.|..+|-+..+. + +.+++..+++++.-++ .|+..-|.++|+-- ..-||...| ...+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34666777777777788888888888544 5 5677888888888665 57778888888754 334555433 445566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+...++-+.|..+|+...+.-.. -...|..++.--..-|+...+..+-+.|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 67778888888888866543222 246778888777778888777776666654
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=9.2e-05 Score=56.80 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH
Q 037414 355 AGRLDEALKLIESM-SVEK---DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 1122 334455566666677777777777766 555555555555667777777777777776
Q ss_pred HHH
Q 037414 431 RDL 433 (577)
Q Consensus 431 ~~~ 433 (577)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.51 E-value=0.00034 Score=51.23 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=58.2
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC-ChhHHHHHHHHHhh
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG-RWQDVAKIRDLMTR 436 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 436 (577)
+..+|..+...+...|++++|+..|+++++.+|+++..|..+..+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45688888999999999999999999999999999999999999999999 79999999987664
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.48 E-value=0.0051 Score=59.17 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
.+|..++...-+.+..+.|..+|.+..+.+ ...+.....+++.- ...++.+.|..+|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999998653 23444444444433 3357777899999999876 4556788899999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 351 LLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987 323333 4999999999999999999999999999988754
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0015 Score=65.43 Aligned_cols=121 Identities=6% Similarity=0.026 Sum_probs=101.4
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc
Q 037414 86 GGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY 159 (577)
Q Consensus 86 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 159 (577)
.+.+.+......+++......+++++..++.+.... -..+..++|+.|.+.|..++++.+++.=...|+-||.+
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667777777888888888888899888776542 23356799999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKC 206 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 206 (577)
|++.||+.+.+.|++..|.++...|...+...+..|+...+.++.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998888777777777666666666
No 156
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00045 Score=49.87 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=44.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+...+...|++++|+..++++++..|.++..+..+..++...|++++|...+++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455677788888888888888888888888888888888888888888888777654
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.28 Score=52.61 Aligned_cols=387 Identities=12% Similarity=0.069 Sum_probs=210.7
Q ss_pred hccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 037414 30 LEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHK 106 (577)
Q Consensus 30 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 106 (577)
+.|.|+.++|+.+++.....+ .-|..|+..+-..+.+ .+.+..+++...+. .|+......+..+|.|.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~------~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK------GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC------CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 678999999998887776431 1155555544444433 77888888887754 566888888899999988
Q ss_pred ChH----HHHHHHhcCCCCCcchHHHHHHHHHhC-CCh---------hHHHHHHHHHHHCCCCC-CcchHHHHHHHHhcC
Q 037414 107 ALT----DAHALFNGMKERDSVSWSVMVGGFSKV-ADF---------INCFETFREFIRCGMQL-DSYTLPFVIRACRDR 171 (577)
Q Consensus 107 ~~~----~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~---------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~ 171 (577)
++. .|.+++...+++--.-|+.+ +.+.+. ..+ .-|.+.++.+.+.+-+. +..-...-+......
T Consensus 125 ~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~ 203 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ 203 (932)
T ss_pred HHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 765 57788887776555556543 333332 222 23555666666554111 122222223345567
Q ss_pred CChHHHHHHHH-HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHH-
Q 037414 172 KDIVMGRLIHD-IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM- 249 (577)
Q Consensus 172 ~~~~~a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~- 249 (577)
+..++|..++. ...+.-...+...-+--++.+...+++.+..++-.++..++...|...+. .++..|-..
T Consensus 204 ~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~--------sv~klLe~~~ 275 (932)
T KOG2053|consen 204 GKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTD--------SVFKLLELLN 275 (932)
T ss_pred ccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHH--------HHHHHHHhcc
Confidence 88999999884 33333334455566677889999999988777666655433221222110 012222111
Q ss_pred -------HHhcCCHHHHHHHHHhccC-CChhhHHHHHHHHH---HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 250 -------YAKCGSIDSAREIFDRMRQ-KNVISWSAMIAAYG---YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 250 -------~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+...+.++...+...+... ..--.|-+-+.++. .-|+.+++.-.|-+- -|-.|- |..=+..|..
T Consensus 276 ~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpc---c~~Dl~~yl~ 350 (932)
T KOG2053|consen 276 KEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPC---CAIDLNHYLG 350 (932)
T ss_pred cccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcH---hHhhHHHhhc
Confidence 2223333333333333322 12223334444443 347777765554332 232321 2222222222
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHH-------HHHHHHHHHHHcCC-----HHHHHHHHHhC------C------CCCCH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVK-------HYTCMVDLLGRAGR-----LDEALKLIESM------S------VEKDE 374 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~m------~------~~p~~ 374 (577)
.=..++-..++.... +..++.. -+.+.+....-.|. -+.-..++++. + .-|..
T Consensus 351 ~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE 427 (932)
T KOG2053|consen 351 HLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTE 427 (932)
T ss_pred cCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccc
Confidence 223333333333332 1122211 12222222222231 11222222211 1 11221
Q ss_pred ---------hHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCcc
Q 037414 375 ---------GLWGALLGACRIHKNV---DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKK 441 (577)
Q Consensus 375 ---------~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 441 (577)
-+-+.|+..|.+.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-+..|.+.++.|--+.|..
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 1456777889888875 467777788888889998888999999999999999999999886555543
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.18 Score=54.07 Aligned_cols=217 Identities=13% Similarity=0.148 Sum_probs=135.9
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 037414 133 FSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 210 (577)
....+++.+|+.....+.+. .||. .|..++.+ ..+.|..++|..+++.....+. .|..|...+-.+|...|+.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 34457788888888887764 3553 35555665 4677888888887777665553 37788888888888888888
Q ss_pred HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHH----HHHHHHhccCCChhhHHHHHHHHHHcC-
Q 037414 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDS----AREIFDRMRQKNVISWSAMIAAYGYHG- 285 (577)
Q Consensus 211 ~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~li~~~~~~g- 285 (577)
+|..+|++....+ |+......+-.+|.+.+++.+ |.+++...++.--..|+. ++.+.+.-
T Consensus 95 ~~~~~Ye~~~~~~--------------P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~ 159 (932)
T KOG2053|consen 95 EAVHLYERANQKY--------------PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIF 159 (932)
T ss_pred HHHHHHHHHHhhC--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhcc
Confidence 8888888876543 344455566667777666653 556666555555555554 33333321
Q ss_pred C---------hHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc
Q 037414 286 Q---------GKKALDLFPMMLSSR-VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355 (577)
Q Consensus 286 ~---------~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 355 (577)
. ..-|.+.++.+.+.+ -.-+..-....+......|..++|..++..-..+.-..-+...-+--++.+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 1 124566677776654 222222233334455677889999998843322212222334445667888889
Q ss_pred CCHHHHHHHHHhC
Q 037414 356 GRLDEALKLIESM 368 (577)
Q Consensus 356 g~~~~A~~~~~~m 368 (577)
+++.+..++-.++
T Consensus 240 ~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 240 NRWQELFELSSRL 252 (932)
T ss_pred cChHHHHHHHHHH
Confidence 9988877776665
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.39 E-value=0.0016 Score=57.90 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=79.2
Q ss_pred HHHHHhc--cCCChhhHHHHHHHHHHc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-------------
Q 037414 260 REIFDRM--RQKNVISWSAMIAAYGYH-----GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT------------- 319 (577)
Q Consensus 260 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 319 (577)
...|+.. ..+|-.+|..++..|.+. |+.+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4566665 457888999999988764 77888889999999999999999999999987543
Q ss_pred ---CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 320 ---GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 320 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
.+-+-|.+++++| +.+|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346688899999 567999999999999998877664
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0014 Score=65.48 Aligned_cols=104 Identities=12% Similarity=0.028 Sum_probs=84.6
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV 390 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 390 (577)
...+...|++++|.++|..+++. -+.+...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45566789999999999999853 2234677888888999999999999999888 5556 455888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
++|+..++++++++|.++.....+..+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999987766654443
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0029 Score=56.08 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
...+..+...|...|++++|...|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666677777777777777765 22222 3467777777888888888888888888888888888888888
Q ss_pred HHhccCC--------------hhHHHHHHHHHhh
Q 037414 417 VYANAGR--------------WQDVAKIRDLMTR 436 (577)
Q Consensus 417 ~~~~~g~--------------~~~A~~~~~~m~~ 436 (577)
+|...|+ +++|.+++++..+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 8877766 4556666555544
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0033 Score=49.52 Aligned_cols=80 Identities=10% Similarity=0.047 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCcchHHHHHHHHhcCC--------ChHHHHHHHHHHHHcCCCCcHHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGM-QLDSYTLPFVIRACRDRK--------DIVMGRLIHDIVLKSGLDIDQFVC 196 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 196 (577)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 999999999999876543 233567889999999999999999
Q ss_pred HHHHHHHHh
Q 037414 197 AALVDMYAK 205 (577)
Q Consensus 197 ~~li~~~~~ 205 (577)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 163
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.33 E-value=0.0029 Score=49.81 Aligned_cols=81 Identities=11% Similarity=0.175 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhhHhcCCCCCHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPNRITFVSLLYACSHTG--------LVEEGLRLFSSMWDDFAVRPDVK 343 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 343 (577)
|-...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. .+-+...+++.|+.. +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334556667777999999999999999999 899999999999887653 244567788888865 8999999
Q ss_pred HHHHHHHHHHH
Q 037414 344 HYTCMVDLLGR 354 (577)
Q Consensus 344 ~~~~li~~~~~ 354 (577)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0025 Score=56.23 Aligned_cols=94 Identities=16% Similarity=-0.013 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|+.++|+..++++++..|.....+..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788889999999988877 33332 247888888899999999999999999999998888888888
Q ss_pred HHHh-------ccCChhHHHHHHHHH
Q 037414 416 NVYA-------NAGRWQDVAKIRDLM 434 (577)
Q Consensus 416 ~~~~-------~~g~~~~A~~~~~~m 434 (577)
.+|. ..|++++|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666543
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0042 Score=47.89 Aligned_cols=57 Identities=21% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555544431 112233333444444444444444444444
No 166
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.26 E-value=0.026 Score=56.68 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
+|..+++.-.+..-+..|+.+|.+..+ ..+..+++++..||. ++..-|.++|+-=.+. ..-+..--...++-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 455566666666666677777766653 245566666666653 4556666776653332 111222233455556
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+.++-..++.+|+..+.. ++.|+ ...|..+++-=..-|++..+.++-+++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6666667777777777654 45544 466777777666677777776666554
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.25 E-value=0.015 Score=56.17 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-GLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDL 351 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~ 351 (577)
.+..|...|++..|-..+.+ +...|... |++++|.+.|+...+-+.-... ..++.-+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 45566666666666555544 44566676 8888888888887653322222 3456667788
Q ss_pred HHHcCCHHHHHHHHHhCC---CC-----CCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----hhHHHHHHH
Q 037414 352 LGRAGRLDEALKLIESMS---VE-----KDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNP-----GHYVLLSNV 417 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~---~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~ 417 (577)
+.+.|++++|.++|++.. .. .+.. .+-..+-.+...||...|.+.+++....+|.-. .....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 999999999999998871 11 1121 222333356677999999999999998887522 234456666
Q ss_pred Hhc--cCChhHHHHHHHH
Q 037414 418 YAN--AGRWQDVAKIRDL 433 (577)
Q Consensus 418 ~~~--~g~~~~A~~~~~~ 433 (577)
|-. ...+++|..-|+.
T Consensus 245 ~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHTT-CCCHHHHCHHHTT
T ss_pred HHhCCHHHHHHHHHHHcc
Confidence 643 2344444444433
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.25 E-value=0.0016 Score=47.00 Aligned_cols=61 Identities=26% Similarity=0.281 Sum_probs=48.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677889999999999888 45564 45888888889999999999999999999988864
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.23 E-value=0.009 Score=52.93 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHH
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYT 346 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 346 (577)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.++. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 345677777788888888888888888876543332 346677777888888888888888887642 33 345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 347 CMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.+...|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666677766665554332221 112577888888888888876 5555555554443
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.23 E-value=0.023 Score=54.87 Aligned_cols=214 Identities=12% Similarity=0.177 Sum_probs=113.7
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhcCCChHHHHHHH
Q 037414 107 ALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIH 181 (577)
Q Consensus 107 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~ 181 (577)
++++|..+|++ ....|-..|++++|.+.|.+....-.+.+. ..|......+.+ .++++|..
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~-- 95 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIE-- 95 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHH--
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHH--
Confidence 55566555443 455677777777777777665432111000 011111111211 13333333
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc-CCHHHHH
Q 037414 182 DIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC-GSIDSAR 260 (577)
Q Consensus 182 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~-g~~~~A~ 260 (577)
.|...+..|...|++..|-+++.. +...|-+. |++++|.
T Consensus 96 -------------~~~~A~~~y~~~G~~~~aA~~~~~---------------------------lA~~ye~~~~d~e~Ai 135 (282)
T PF14938_consen 96 -------------CYEKAIEIYREAGRFSQAAKCLKE---------------------------LAEIYEEQLGDYEKAI 135 (282)
T ss_dssp -------------HHHHHHHHHHHCT-HHHHHHHHHH---------------------------HHHHHCCTT--HHHHH
T ss_pred -------------HHHHHHHHHHhcCcHHHHHHHHHH---------------------------HHHHHHHHcCCHHHHH
Confidence 344445667777777776665543 45566666 7777777
Q ss_pred HHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-----CCCHH-HHHHHHHHHhccCCHHHH
Q 037414 261 EIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-----LPNRI-TFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 261 ~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~-t~~~ll~a~~~~g~~~~a 325 (577)
+.|++..+ .. ...+..+...+.+.|++++|.++|++....-. +++.. .|...+-.+...|++..|
T Consensus 136 ~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A 215 (282)
T PF14938_consen 136 EYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAA 215 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 77776542 11 12355667778888999999999988765422 22222 233333355567888888
Q ss_pred HHHHHHhhHh-cCCCCC--HHHHHHHHHHHHH--cCCHHHHHHHHHhCCCCCCHh
Q 037414 326 LRLFSSMWDD-FAVRPD--VKHYTCMVDLLGR--AGRLDEALKLIESMSVEKDEG 375 (577)
Q Consensus 326 ~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~ 375 (577)
...++..... .++..+ ......|++++-. ...+++|..-|+.+. +.|..
T Consensus 216 ~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 216 RKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 8888887532 122222 3445566676653 335777777777774 33443
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.23 E-value=0.013 Score=61.24 Aligned_cols=65 Identities=20% Similarity=0.135 Sum_probs=44.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+...|.++.-.....|++++|...++++++++| +...|..+...|...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566665555566777777777777777777 35677777777777777777777777665544
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.23 E-value=0.00053 Score=50.02 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=43.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...|++++|+..++++.+.+|.++..+..++.+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788888888888888888888888888888888888888888888776654
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.18 E-value=0.0067 Score=60.61 Aligned_cols=101 Identities=14% Similarity=0.056 Sum_probs=81.3
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHc
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRA 355 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 355 (577)
-...+...|++++|+++|++.++.. +-+...|..+..+|...|++++|...++.+++ +.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3456678899999999999999863 33566788888899999999999999999974 445 567888888999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 037414 356 GRLDEALKLIESM-SVEKDEGLWGALL 381 (577)
Q Consensus 356 g~~~~A~~~~~~m-~~~p~~~~~~~ll 381 (577)
|++++|...|++. .+.|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999987 5566655444444
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0036 Score=60.24 Aligned_cols=130 Identities=12% Similarity=0.132 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~ 384 (577)
.+|..++....+.+..+.|+++|....+.......+....+++. |...++.+.|.++|+.. ....+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46788889999999999999999999754233334444444443 33356677799999988 3345777899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...++.+.|..+|++.+..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998765543 58888999999999999999999888764
No 175
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.09 E-value=0.28 Score=51.07 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
++.+....-.+.+++...|.-++|.+.|-+-..+. +-+..|...+++.+|.++-+...-
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---------------------aAv~tCv~LnQW~~avelaq~~~l 906 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---------------------AAVHTCVELNQWGEAVELAQRFQL 906 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH---------------------HHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666666677777777777766665543321 235556666677777776666554
Q ss_pred CChhhHHH--------------HHHHHHHcCChHHHHHHHHHhhh
Q 037414 269 KNVISWSA--------------MIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 269 ~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
|.+.+.-+ -|..+.+.|+.-.|.+++.+|.+
T Consensus 907 ~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 907 PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 44443221 13334445555555555555543
No 176
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.08 E-value=0.0018 Score=49.59 Aligned_cols=80 Identities=21% Similarity=0.327 Sum_probs=40.4
Q ss_pred cCChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 037414 284 HGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 361 (577)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...|+ ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666654321 1333333455666666666666666655 1 11222 22233335556666666666
Q ss_pred HHHHHh
Q 037414 362 LKLIES 367 (577)
Q Consensus 362 ~~~~~~ 367 (577)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.07 E-value=0.0058 Score=61.30 Aligned_cols=116 Identities=11% Similarity=0.123 Sum_probs=91.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC-CC-----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-KN-----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSL 312 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 312 (577)
+......+++......+++.+..++.+... |+ ..|..++|..|.+.|..++++.+++.=...|+-||..||+.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 334445567777777788889888887753 21 235569999999999999999999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 355 (577)
++.+.+.|++..|.++...|... ....+..++..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999888654 5555666666555555554
No 178
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.05 E-value=0.0046 Score=55.01 Aligned_cols=72 Identities=7% Similarity=0.084 Sum_probs=45.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc----------------CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 138 DFINCFETFREFIRCGMQLDSYTLPFVIRACRD----------------RKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 138 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
..+=....+..|.+-|+.-|..+|+.||+.+=+ -.+-+-|.+++++|...|+-||..++..|++
T Consensus 67 HVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~ 146 (228)
T PF06239_consen 67 HVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLN 146 (228)
T ss_pred hHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 333334444455555555555555555554322 1234567888888888888889889988888
Q ss_pred HHHhCCCH
Q 037414 202 MYAKCKVI 209 (577)
Q Consensus 202 ~~~~~g~~ 209 (577)
.+++.+..
T Consensus 147 iFG~~s~p 154 (228)
T PF06239_consen 147 IFGRKSHP 154 (228)
T ss_pred HhccccHH
Confidence 88777653
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.03 E-value=0.0024 Score=47.29 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+...++++.|.++++.+++.+|.++..+.....+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888888888888888888888888877544
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.01 E-value=0.017 Score=60.37 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=100.6
Q ss_pred CChhhHHHHHHHHHHc--C---ChHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhhH
Q 037414 269 KNVISWSAMIAAYGYH--G---QGKKALDLFPMMLSSRVLPNR-ITFVSLLYACSHT--------GLVEEGLRLFSSMWD 334 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 334 (577)
.|...|...+.+.... + +..+|..+|++..+. .||- ..+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 5778899888885543 2 367999999999985 6664 4455444444222 123344444444322
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
......+...|.++.-.+...|++++|...+++. ...|+...|..+...+...|+.++|...++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123334577877776677789999999999998 66788889999999999999999999999999999999884
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0068 Score=56.75 Aligned_cols=101 Identities=15% Similarity=0.105 Sum_probs=83.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 339 RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR---IHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~---~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++. ......++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456899999999999999999999999887 3333 4455655555533 3335688999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
|...+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0029 Score=58.86 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=78.0
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVD 391 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~ 391 (577)
-..+.+++++|...|...+ .+.|+ ...|.--..+|.+.|.++.|.+-.+.. .+.|... +|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3567789999999999997 46665 455555678899999999999877766 6667544 9999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHH
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
+|++.|+++++++|++......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 99999999999999987443333
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.067 Score=55.38 Aligned_cols=240 Identities=14% Similarity=0.093 Sum_probs=152.9
Q ss_pred CCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc-CCC--------CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh
Q 037414 155 QLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS-GLD--------IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 155 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
.|.+..|..+.......-.++.|++.|-+.... |++ .+...-.+=+.+| .|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 366666776666655555666666655443221 111 0111112223333 5889999999999888774
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K---NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 226 ~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
-|.++.+.|++-...++++.-.. . -...|+.+...++....+++|.+.|..-...
T Consensus 766 --------------------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~ 825 (1189)
T KOG2041|consen 766 --------------------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT 825 (1189)
T ss_pred --------------------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 37888889999888888776432 1 1357888999998888899998888764321
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 037414 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380 (577)
Q Consensus 301 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 380 (577)
...+.++.+..++++-+.+-..+ +.+......+.+++.+.|.-++|.+.+-+-+ .|. +.
T Consensus 826 ---------e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk-----aA 884 (1189)
T KOG2041|consen 826 ---------ENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK-----AA 884 (1189)
T ss_pred ---------HhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----HH
Confidence 23556666666666655554444 3445566678889999999999988887765 332 34
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-----------CchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQ-----------NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+|...+++.+|.++.++..-.... ...-..--+..+.++|+.-+|.+++.+|.++.
T Consensus 885 v~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 56677777787777766542110000 00112335667888899999999988887653
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.065 Score=50.25 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CChh-h---HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc-
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ--KNVI-S---WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH- 318 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 318 (577)
....+.+.|++++|.+.|+++.. |+.. . .-.++.+|.+.+++++|...+++..+.-..-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 44556678888888888888865 3321 1 234566778888888888888888775322222333334444331
Q ss_pred -cC---------------C---HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHH
Q 037414 319 -TG---------------L---VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGA 379 (577)
Q Consensus 319 -~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 379 (577)
.+ + ..+|...|+.++++ |-...-..+|..-+..+...--. ---.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~-~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAK-YELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHH-HHHH
Confidence 10 1 12333444444432 32233344444433333100000 0113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+..-|.+.|.+..|..-++.+++..|..+ .+...++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 44558889999999999999999987754 567788899999999999999887654
No 185
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.0076 Score=56.16 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=80.1
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAG 356 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 356 (577)
..-+.+.+++.+|+..|.+.++. .+-|.+-|..=..+|++.|.++.|.+-.+..+ .+.|. ...|..|-.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 34567789999999999999885 23456677778889999999999988888776 45665 678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHhHHHHHH
Q 037414 357 RLDEALKLIESM-SVEKDEGLWGALL 381 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p~~~~~~~ll 381 (577)
++++|.+.|++. .+.|+-.+|..=|
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999998887 7788777665444
No 186
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.027 Score=54.80 Aligned_cols=152 Identities=10% Similarity=0.065 Sum_probs=92.6
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH---H------
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY--ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC---M------ 348 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---l------ 348 (577)
.+...|+.++|...-....+.. ++ ..+..++. ++-..++.+.|...|++.+ .+.|+-..-.. +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 4445566666666555444331 11 11112222 2233455666666666654 34444221111 1
Q ss_pred ----HHHHHHcCCHHHHHHHHHhC-CCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 349 ----VDLLGRAGRLDEALKLIESM-SVEK-----DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 349 ----i~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
..-..+.|++.+|.+.|.+. .+.| +...|........+.|+..+|+.--+.+++++|.-...|..-.+++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 12345678888888888776 4444 4445555556677888888888888888888888777888888888
Q ss_pred hccCChhHHHHHHHHHhhC
Q 037414 419 ANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~ 437 (577)
...++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8888888888888766543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.94 E-value=0.11 Score=48.87 Aligned_cols=61 Identities=7% Similarity=-0.068 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH----HHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL----PFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
+-.....+.+.|++++|.+.|+.+... -|+.... -.+..++-+.++++.|...+++.++.-
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 333445566788888888888888774 3433222 234456677888888888888887764
No 188
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.071 Score=54.72 Aligned_cols=85 Identities=18% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHh-HHH------
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEKDEG-LWG------ 378 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~-~~~------ 378 (577)
.+...+..-+-+...+..|-++|..|-. ...++++....++|++|..+-++.| ..||+. -|.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444444445555666677777777621 2356777778888888888888874 334432 111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHH
Q 037414 379 ----ALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 379 ----~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
-.-.+|.+.|+-.+|.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12234555555555555555543
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=96.88 E-value=0.0072 Score=51.57 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
-+-..|++++|..+|+-+ -..| |..-|..|..++...++++.|...+.....++++||.++.....+|...|+.+.|+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 345789999999999987 2233 56678888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 037414 429 KIRDLMTR 436 (577)
Q Consensus 429 ~~~~~m~~ 436 (577)
..|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988775
No 190
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.86 E-value=0.029 Score=47.68 Aligned_cols=98 Identities=5% Similarity=-0.082 Sum_probs=76.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
..-.+..-+...|++++|.++|+-+.. .+..-|..|...+-..|++++|+..|....... +-|...+-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 344556667789999999999998764 345678888888999999999999999988765 3456677778888899
Q ss_pred cCCHHHHHHHHHHhhHhcCCCC
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRP 340 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p 340 (577)
.|+.+.|++-|+..+...+-.|
T Consensus 116 lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred cCCHHHHHHHHHHHHHHhccCh
Confidence 9999999999998876544333
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.86 E-value=0.52 Score=46.03 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 386 (577)
.+.+.-+.-|...|+...|.++-.+. .+ |+...|-..+.+|+..++|++-.++... +..+..|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566777789888888775554 55 8999999999999999999999887654 3356889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+.+
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999999888771 23567889999999999988765443
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.38 Score=46.73 Aligned_cols=288 Identities=12% Similarity=0.044 Sum_probs=173.4
Q ss_pred HHHHHHHHH--cCCChHHHHHHHhcCC---CCCcchHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcc--hHHHHH
Q 037414 95 ANKLLYIYA--LHKALTDAHALFNGMK---ERDSVSWSVMVG--GFSKVADFINCFETFREFIRCGMQLDSY--TLPFVI 165 (577)
Q Consensus 95 ~~~li~~~~--~~g~~~~A~~~f~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 165 (577)
|.+|-..+. -.|+-..|++.-.+-. ..|....--++. +-.-.|+++.|.+-|+.|... |... -+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 344444333 3577777777665543 235444444443 344579999999999999873 3222 123344
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch--hhH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV--ILG 243 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~--~~~ 243 (577)
-...+.|+.+.|++.-+..-... +.-...+.+++...+..|+++.|+++.+.-.+..++. +++ ..-
T Consensus 162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie-----------~~~aeR~r 229 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE-----------KDVAERSR 229 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc-----------hhhHHHHH
Confidence 44567899999988888776553 3346788899999999999999999998765422211 111 011
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhcc--CCChhhHH-HHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 244 TAVIDMYAK---CGSIDSAREIFDRMR--QKNVISWS-AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 244 ~~Li~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
..|+.+-+. .-+...|...-.+.. .||.+.-. .-..++.+.|+..++-.+++.+-+....|+.- .+-...
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~a 305 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRA 305 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHh
Confidence 112221111 123344444433333 35544332 33567888999999999999998875555532 222344
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHH-HhcCCHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGAC-RIHKNVDLAE 394 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~ 394 (577)
+.|+. +..-++...+-..++|+ .+..-.+..+-...|++..|..--+.. ...|....|..|...- ...||-.++.
T Consensus 306 r~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR 383 (531)
T COG3898 306 RSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVR 383 (531)
T ss_pred cCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHH
Confidence 55543 22222322222244554 456666777777888888777655554 4467788887777764 4458888888
Q ss_pred HHHHHHHhc
Q 037414 395 MAAKSLLER 403 (577)
Q Consensus 395 ~~~~~~~~~ 403 (577)
..+-+.++.
T Consensus 384 ~wlAqav~A 392 (531)
T COG3898 384 QWLAQAVKA 392 (531)
T ss_pred HHHHHHhcC
Confidence 888777653
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.0023 Score=46.62 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=28.4
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLW 377 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 377 (577)
..|++++|.++|+.+.+. .+-+...+..+...|.+.|++++|.++++++ ...|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345555555555555432 1123444445555555555555555555555 333443333
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.78 E-value=0.04 Score=47.60 Aligned_cols=123 Identities=13% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC---CHhHH
Q 037414 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV-RPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEK---DEGLW 377 (577)
Q Consensus 303 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~~ 377 (577)
.|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...++.+. ..| .+.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444444444555555555555555554432 22 2233344444444444555555555544441 011 11122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
-.+.+.+...|....|+..|+.+....|. +..-......+.++|+..++.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH
Confidence 23334444555555555555555444433 122222333344444444443
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.051 Score=49.64 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
..++..+...+.+.-....+..+++...+.++.....|..+-.+.|+.+.|...|++..+.+.-. .+..-+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-------~~~q~~~~ 253 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-------DGLQGKIM 253 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-------hccchhHH
Confidence 34455555556666666666666666555566666666666667777777766666543211110 11122222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
+.......|.-.+++..|...|.++.. .|++.-|.-.-+..-.|+...|++.++.|...
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333344455556666677777766654 33444444344444456777777777777664
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.74 E-value=0.014 Score=55.21 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLS 415 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 415 (577)
.|...+..+.+.|++++|...|+.+ ...|+. ..+--+...+...|++++|...|+.+.+..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444455666666555555 222322 244445555566666666666666666655543 23344445
Q ss_pred HHHhccCChhHHHHHHHHHhh
Q 037414 416 NVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666665554
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.74 E-value=0.27 Score=50.75 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
.|-+.++-+++...+..+...+...+-+...+.-|.++|.+|-.. ..++......+++++|..+-+..-
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-- 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-- 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--
Confidence 334444444444444444555555555566666777777766432 245556666777777776666553
Q ss_pred cCCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 336 FAVRPDVKH-----------YTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 336 ~~~~p~~~~-----------~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+.|++.. +.-.-++|.++|+-.||.++++++
T Consensus 801 -e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 801 -EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred -cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 33444321 112224566777777777777776
No 198
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.72 E-value=0.034 Score=48.98 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555666666666666666666654322221 2345555566666666666666666654
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.70 E-value=0.0058 Score=44.58 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK-NVDLAEMAAKSLLERQP 405 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 405 (577)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777778888888888888888876 4445 4457888888888888 68899999988888876
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.078 Score=48.50 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCC---CC----------------CcchHHH-HHHH--HHhCCChhHHHHHHHHHH
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMK---ER----------------DSVSWSV-MVGG--FSKVADFINCFETFREFI 150 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~---~~----------------~~~~~~~-li~~--~~~~g~~~~A~~~~~~m~ 150 (577)
..|+--+.++++....++|..-++... .| +.+.|.. +|.+ ....|.+.+.+.-+..++
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 456666777888888877765554432 22 2233322 2222 233566666555444443
Q ss_pred HCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 151 RCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 151 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
.. ..-.+.........+.-...+++-. ..+-+.++..+.-.|.+.-...++.+..+++..
T Consensus 150 ~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e----- 209 (366)
T KOG2796|consen 150 TV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE----- 209 (366)
T ss_pred HH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-----
Confidence 21 1122333322223344455555432 245667777777778888788888877766543
Q ss_pred HhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHH-----HHHHHHHcCChHHHHHHHHHhhhCC
Q 037414 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSA-----MIAAYGYHGQGKKALDLFPMMLSSR 301 (577)
Q Consensus 231 i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g 301 (577)
.++.....|..+-.+.||.+.|...|++..+ -|..+.+. +...|.-.+++..|...|.+.....
T Consensus 210 -------~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D 282 (366)
T KOG2796|consen 210 -------QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD 282 (366)
T ss_pred -------ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC
Confidence 3667778899999999999999999996542 34333333 3445666778889999998887653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 302 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
.-|.+..|.-.-...-.|+...|.+..+.|+ ...|...+-++++
T Consensus 283 -~~~~~a~NnKALcllYlg~l~DAiK~~e~~~---~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 283 -PRNAVANNNKALCLLYLGKLKDALKQLEAMV---QQDPRHYLHESVL 326 (366)
T ss_pred -CCchhhhchHHHHHHHHHHHHHHHHHHHHHh---ccCCccchhhhHH
Confidence 2244444433333445689999999999997 3567665555443
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.68 E-value=0.049 Score=44.55 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=61.5
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLG 353 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 353 (577)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778888888888888888776654 23566677788888888888888888875432111 1222223334667
Q ss_pred HcCCHHHHHHHHHhC
Q 037414 354 RAGRLDEALKLIESM 368 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m 368 (577)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888776543
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.65 E-value=0.03 Score=45.76 Aligned_cols=81 Identities=22% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHcCCHHHHHHHHHhC---CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHhccCC
Q 037414 352 LGRAGRLDEALKLIESM---SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ---NPGHYVLLSNVYANAGR 423 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 423 (577)
+-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..++++..+..|+ +......+..++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 34445555555555543 11111 113334444555555555555555555555444 33334444445555555
Q ss_pred hhHHHHHHH
Q 037414 424 WQDVAKIRD 432 (577)
Q Consensus 424 ~~~A~~~~~ 432 (577)
.++|.+.+-
T Consensus 91 ~~eAl~~~l 99 (120)
T PF12688_consen 91 PKEALEWLL 99 (120)
T ss_pred HHHHHHHHH
Confidence 555555543
No 203
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.63 E-value=0.0016 Score=39.74 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=30.6
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
++++++.+|+++.+|..|..+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.62 E-value=0.4 Score=41.72 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHH
Q 037414 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYV 412 (577)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~ 412 (577)
+.|++..--.|..++.+.|+..||...|++. ...-|....-.+.++....++...|...++++.+.+|. .|....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3455555555555555555555555555554 12234445555555555555555555555555555433 334444
Q ss_pred HHHHHHhccCChhHHHHHHHHHhh
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+.+.|...|++++|+..|+...+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 555555555555555555554443
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.16 Score=50.18 Aligned_cols=159 Identities=19% Similarity=0.158 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---Chh----hHHHHHHHHHH---cCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQK---NVI----SWSAMIAAYGY---HGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
.|+-.|....+++...++++.+... +.. .--...-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555699999999999999999763 111 11123445556 7899999999999776667788888877666
Q ss_pred HHhc---------cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHH---HhC----C-C--C
Q 037414 315 ACSH---------TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD----EALKLI---ESM----S-V--E 371 (577)
Q Consensus 315 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m----~-~--~ 371 (577)
.|-. ...+++|...|.+.- .+.|+..+---++..+...|... +..++- ..+ + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5522 223566666666443 44555433333333333334311 222222 111 1 1 1
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.|-.-+.+++.++.-.|+.+.|.+..+++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 23334456666666777777777777777766554
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.93 Score=47.90 Aligned_cols=117 Identities=15% Similarity=0.072 Sum_probs=89.4
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH
Q 037414 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL 380 (577)
Q Consensus 301 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 380 (577)
|......|.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-+++-+++. .+.-|.-+
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334444556666667778899999988877662 4888888888999999999999988888764 25668888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
..+|.+.|+.++|..++-+.-. +.-.+.+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8999999999999888765422 22578889999999999887544
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.56 E-value=0.86 Score=44.53 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
+.+.-|.-+...|+...|.++..+..+ ||...|...+.+++..+++++-..+... ..+|..|...+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCC
Confidence 344445666788999999999999984 8999999999999999999988876542 3456789999999999999
Q ss_pred hhHHHHHHHHH
Q 037414 424 WQDVAKIRDLM 434 (577)
Q Consensus 424 ~~~A~~~~~~m 434 (577)
..+|.++...+
T Consensus 253 ~~eA~~yI~k~ 263 (319)
T PF04840_consen 253 KKEASKYIPKI 263 (319)
T ss_pred HHHHHHHHHhC
Confidence 99999998774
No 208
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.45 E-value=0.13 Score=41.79 Aligned_cols=139 Identities=15% Similarity=0.200 Sum_probs=84.5
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 362 (577)
-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+ | ...+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----D----------is~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----D----------ISKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS---------------GGG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------chhhcchHHHH
Confidence 356666666666666543 244555656555444444444555555442221 1 12456666666
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 363 KLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 363 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
..+-.++ .+.......+......|+-+.-.++...+.+.+..+|....-+.++|.+.|+..++.+++.+.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 6665554 244556667788899999999999999998877778899999999999999999999999999999974
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.30 E-value=1.4 Score=44.01 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=55.9
Q ss_pred HHHHhCCCCC----CHhHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 363 KLIESMSVEK----DEGLWGALLGA--CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 363 ~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.++++.++.| +...-|.|..| +..+|++.++...-.-+.+..| ++.+|..+.-+.....++++|..++..+.
T Consensus 445 ~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 445 DFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 3445556555 33345555555 5678999999988888888888 78999999999999999999999997764
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.29 E-value=0.018 Score=42.43 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
..|.+.+++++|.++++++ ...| +...|......+...|++++|...+++.++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4678889999999999888 4555 445777788889999999999999999999999876543
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.28 E-value=0.011 Score=38.71 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
.+|..+...+...|++++|+++++++++..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988877653
No 212
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.28 E-value=1.2 Score=43.36 Aligned_cols=285 Identities=16% Similarity=0.146 Sum_probs=185.8
Q ss_pred hHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH--hcCCChHHHHHHHHHHHHcCCCCcHH--HHHH
Q 037414 125 SWSVMVGGFSK--VADFINCFETFREFIRCGMQLDSYTLPFVIRAC--RDRKDIVMGRLIHDIVLKSGLDIDQF--VCAA 198 (577)
Q Consensus 125 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ 198 (577)
.|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..|+.+- .-.|+.+.|++-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 45555555544 56777777766555433 556777777787764 3469999999999999753 3222 2233
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CChh-
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVI- 272 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~- 272 (577)
|.-.--+.|..+.|...-+..-+.-+. -.....+++...+..|+++.|+++.+.-.. +++.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-------------l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-------------LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-------------CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 333345678888888776655432111 234556789999999999999999987653 4442
Q ss_pred -hHHHHHHHHHH---cCChHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH
Q 037414 273 -SWSAMIAAYGY---HGQGKKALDLFPMMLSSRVLPNRIT-FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347 (577)
Q Consensus 273 -~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 347 (577)
.-..|+.+-+. ..+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+ ..|....+..
T Consensus 227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l 301 (531)
T COG3898 227 RSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL 301 (531)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH
Confidence 22233333222 2345566655554443 5666542 23445688999999999999999974 4566665544
Q ss_pred HHHHHHHcCCHHH--HHH--HHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-c
Q 037414 348 MVDLLGRAGRLDE--ALK--LIESMSVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN-A 421 (577)
Q Consensus 348 li~~~~~~g~~~~--A~~--~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~ 421 (577)
.+ +.+.|+... ..+ -++.| +| +..+.-.+..+....|++..|..-.+.+....|.. ..|..|.++-.. .
T Consensus 302 Y~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAet 376 (531)
T COG3898 302 YV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAET 376 (531)
T ss_pred HH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhcc
Confidence 44 456665322 211 23333 45 45577778888889999999999998888888875 578888888654 4
Q ss_pred CChhHHHHHHHHHhh
Q 037414 422 GRWQDVAKIRDLMTR 436 (577)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (577)
|+-.++...+.+-.+
T Consensus 377 GDqg~vR~wlAqav~ 391 (531)
T COG3898 377 GDQGKVRQWLAQAVK 391 (531)
T ss_pred CchHHHHHHHHHHhc
Confidence 998888888766554
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.27 E-value=0.041 Score=53.39 Aligned_cols=128 Identities=12% Similarity=0.070 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhh---HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CC-CCCHh
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMW---DDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-------SV-EKDEG 375 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~~ 375 (577)
.|..|-..|.-.|+++.|+..++.-+ +++|-.. ....+.-+..++.-.|+++.|.+.|... +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666666788999987766432 3444332 2356677778888889999999888764 21 22445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLE----RQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+.-+|.++|....+++.|+.++.+-+. ++ .....++.+|.++|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777888999999999999998877543 22 2345789999999999999999988876544
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.33 Score=47.51 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=105.7
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChh-hHHHHHHH--HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHH---HHH-----
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVI-SWSAMIAA--YGYHGQGKKALDLFPMMLSSRVLPNRITFVSL---LYA----- 315 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a----- 315 (577)
..++.-.|+.++|..+--.+.+-|.. .+...+.+ +--.++.+.|...|++.+.. .||...-... ...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 45677789999999888777765443 33333443 33477889999999988764 5655433222 111
Q ss_pred -----HhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh-HHHHHHH--
Q 037414 316 -----CSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG-LWGALLG-- 382 (577)
Q Consensus 316 -----~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll~-- 382 (577)
..+.|.+..|.+.+.+.+ ++.|+ ...|.-......+.|++.+|+.--++.- .-|.. ++..+.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~ 329 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRAN 329 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHH
Confidence 246789999999999887 55554 5566666677889999999998877662 23443 3333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
++...+++++|.+-+++..+....
T Consensus 330 c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 356778999999999999887644
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.24 E-value=0.063 Score=44.37 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
..++.+++-++++.|+++....+.+..-..|+. +-...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 445556666666666666666665544321110 0000000 112234667777777888888888
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL 351 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 351 (577)
|++..|.++.+...+.|+++-+...|..|++-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888777777777777777777753
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.23 E-value=0.12 Score=49.01 Aligned_cols=102 Identities=9% Similarity=0.085 Sum_probs=69.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALL 381 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 381 (577)
.|...+......|++++|...|+.+++.+.-.+ ....+..+...|...|++++|...|+.+ ...|+ ...+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556788888888888876532111 0245566777888888888888888877 22232 33555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
..+...|+.+.|..+++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6677889999999999999999888653
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.06 E-value=0.41 Score=43.62 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=93.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQ--KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
....+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...+++..+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 44556677888888888888764 32 1234556777888888888888888876642111111222222222211
Q ss_pred -------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh
Q 037414 320 -------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI 386 (577)
Q Consensus 320 -------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 386 (577)
+...+|...| ..++.-|=......+|...+..+...- ..---.+..-|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 1112233333 333444444444555554444431000 0011124456889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHH
Q 037414 387 HKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 429 (577)
.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|..
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999999865 456778889999998885543
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.06 E-value=0.031 Score=55.80 Aligned_cols=96 Identities=10% Similarity=0.051 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG----LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+...++.+..+|.+.|++++|...|++. .+.|+.. +|..+..+|...|+.++|+..++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3556666777777777777777777664 5556532 4677777777777777777777777775321 121111
Q ss_pred H--HHhccCChhHHHHHHHHHhhCCC
Q 037414 416 N--VYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 416 ~--~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
. .+....+.++..++++...+-|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122333456666666666554
No 219
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.03 E-value=0.05 Score=50.21 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=85.4
Q ss_pred HHHHHHhcc--CCChhhHHHHHHHHHHc-----CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC-----------
Q 037414 259 AREIFDRMR--QKNVISWSAMIAAYGYH-----GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG----------- 320 (577)
Q Consensus 259 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 320 (577)
.++.|.... ++|-.+|-+++..|..+ ++.+-....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355677776 57888999999888764 567778888999999999999999999998875542
Q ss_pred -----CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 037414 321 -----LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL-DEALKLIESM 368 (577)
Q Consensus 321 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 368 (577)
+-+=++.++++| +.+|+.||.++-..|+.++++.+.. .+..++.--|
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 224578999999 6789999999999999999998864 3334443333
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.93 E-value=0.04 Score=47.23 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
....++..+...|+++.|....+.++..+|-+...|..++.+|...|+..+|.++++.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999999999999999999999999999988753
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.92 E-value=0.088 Score=43.50 Aligned_cols=62 Identities=21% Similarity=0.403 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhh--------------HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMW--------------DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~--------------~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
..++..++.++++.|+++....+.+..- ....+.|+..+..+++.+|+..|++..|.++++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4455566666666666666655554331 1123334444444444444444444444444443
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.75 E-value=0.59 Score=42.55 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=28.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC--CcchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 187 (577)
..+.+.|++.+|.+.|+.+...-... -....-.+..++-+.|+++.|...++..++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555666666666666666531110 0112334444555666666666666665554
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.12 Score=50.57 Aligned_cols=64 Identities=13% Similarity=-0.016 Sum_probs=57.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..++..+..++.+.+++..|++...++++.+|+|..+..--..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3466777788899999999999999999999999999999999999999999999999998753
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.52 E-value=1.9 Score=39.25 Aligned_cols=197 Identities=19% Similarity=0.145 Sum_probs=145.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
...+......+...+++..+...+..... .....+......+...++..++...+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 34566778888889999999888887642 34456777777888888899999999998875444422 2222223
Q ss_pred -HHhccCCHHHHHHHHHHhhHhcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HhHHHHHHHHHHhcC
Q 037414 315 -ACSHTGLVEEGLRLFSSMWDDFAV--RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD--EGLWGALLGACRIHK 388 (577)
Q Consensus 315 -a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 388 (577)
.+...|+.+.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78889999999999998853 111 123444445555577889999999999887 33344 567888888889999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.+.+...+....+..|.....+..+...+...+.++++...+....+..
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988865666677777777778999998888776543
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.51 E-value=0.028 Score=42.11 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC---------CC-hhhHHHHHHHHHHcCChHHHHHHHHHh
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ---------KN-VISWSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
.+++.+...|...|++++|+..|++..+ ++ ..+++.+...|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666666667776666666665432 11 234444555555555555555555543
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.50 E-value=0.83 Score=45.18 Aligned_cols=71 Identities=14% Similarity=0.073 Sum_probs=38.3
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCC---C----cchHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 98 LLYIYALHKALTDAHALFNGMKER---D----SVSWSVMVGGFSK---VADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
|+-.|-...+++...++.+.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+.+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333466666677777777666543 1 1111122223444 56677777777665554455566666655554
Q ss_pred H
Q 037414 168 C 168 (577)
Q Consensus 168 ~ 168 (577)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 3
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.42 E-value=0.031 Score=41.83 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC---CchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLER----QPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+++.+...+...|++++|+..+++.++. +++ ...++..++.+|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6677777788888888888888877654 222 23567788888888888888888887654
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.29 E-value=0.33 Score=41.47 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=23.6
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..+...|++++|..+.+.+... -+.|...+..++.++...|+..+|.+.|+.+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344455555555555554443 1233444445555555555555555444433
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.27 E-value=0.1 Score=50.85 Aligned_cols=259 Identities=13% Similarity=0.051 Sum_probs=141.3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCc----chHHHHHHHHhcCCChHHHHHHHHHHH--Hc--CCC-CcHHHHHHHHHH
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLDS----YTLPFVIRACRDRKDIVMGRLIHDIVL--KS--GLD-IDQFVCAALVDM 202 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~li~~ 202 (577)
-+|+.|+....+.+|+..++.|-. |. ..|..|-++|.-.+++++|.+.|..=+ .. |-. -.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467788888888888888777643 32 234455556666677777777654211 10 100 011122223333
Q ss_pred HHhCCCHHHHHHHHhh-CC---C-CChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC--------------------HH
Q 037414 203 YAKCKVIDDARQLFDQ-MP---T-RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS--------------------ID 257 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~-m~---~-~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~--------------------~~ 257 (577)
+--.|.+++|...-.+ +. + .|.+. ....+-.|.+.|-..|+ ++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~------------e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVL------------ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHh------------hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 3344555555432111 10 0 01010 11222334444433321 23
Q ss_pred HHHHHHHhccC---------CChhhHHHHHHHHHHcCChHHHHHHHHHhh----hCCCCC-CHHHHHHHHHHHhccCCHH
Q 037414 258 SAREIFDRMRQ---------KNVISWSAMIAAYGYHGQGKKALDLFPMML----SSRVLP-NRITFVSLLYACSHTGLVE 323 (577)
Q Consensus 258 ~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~t~~~ll~a~~~~g~~~ 323 (577)
.|.++|.+=.+ .--..|..+...|.-.|+++.|+..-+.-. +.|-+. ....+..+..++.-.|+++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe 252 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE 252 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence 34444443211 112345555566666788888887654322 223222 2245667778888889999
Q ss_pred HHHHHHHHhhH---hcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCCHhHHHHHHHHHHhcCCHH
Q 037414 324 EGLRLFSSMWD---DFA-VRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------S-VEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 324 ~a~~~~~~m~~---~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
.|.+.++.... +.| -.....+..+|...|.-...+++|+..+.+- + .--....+.+|..++...|..+
T Consensus 253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~ 332 (639)
T KOG1130|consen 253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR 332 (639)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence 99888876532 111 1223455556777777777888888777653 1 1124557888999999999999
Q ss_pred HHHHHHHHHHhc
Q 037414 392 LAEMAAKSLLER 403 (577)
Q Consensus 392 ~a~~~~~~~~~~ 403 (577)
.|..+.+..++.
T Consensus 333 kAl~fae~hl~~ 344 (639)
T KOG1130|consen 333 KALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHH
Confidence 998888776553
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.08 E-value=0.16 Score=46.94 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=85.7
Q ss_pred HHHHHHHhcCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCC---------
Q 037414 109 TDAHALFNGMK--ERDSVSWSVMVGGFSKV-----ADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRK--------- 172 (577)
Q Consensus 109 ~~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--------- 172 (577)
-..++.|.... ++|-.+|-+.+..|... +..+=.-..++.|.+.|+.-|..+|..|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677766 67888888888877653 455666667788999999999999999998765433
Q ss_pred -------ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH-HHHHHHHhhCCC
Q 037414 173 -------DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI-DDARQLFDQMPT 221 (577)
Q Consensus 173 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 221 (577)
.-+-+..++++|...|+.||..+-..|++++.+.+.. .+..++.-.|++
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2335788999999999999999999999999998874 345555555543
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.42 Score=45.06 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=16.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
|...|-.|...|...|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.85 E-value=0.63 Score=47.70 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=89.1
Q ss_pred hcCCChHHHHHHHH--HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHH
Q 037414 169 RDRKDIVMGRLIHD--IVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246 (577)
Q Consensus 169 ~~~~~~~~a~~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L 246 (577)
.-.++++.+.++.+ .+. ..+ +..-.+.++..+-+.|..+.|+.+-..-. .-
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------------------~r 324 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------------------HR 324 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------------------HH
T ss_pred HHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------------------HH
Confidence 34566666555543 111 111 24447777788888888888887743211 12
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
-+...++|+++.|.++.++.. +...|..|.....+.|+.+-|.+.|.+... |..|+-.|...|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 455667888888877766654 555788888888888888888888877643 445555666677776666
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
++.+...++ | -++....++.-.|+.++..+++.+.+
T Consensus 394 kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 394 KLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666555322 2 13444444555677777777776665
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.72 E-value=1.6 Score=43.39 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV 271 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~ 271 (577)
.+|..+++.-.+..-++.|+++|-+..+... +.+++.++++.+..|+ .|+...|.++|+.-.. +|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----------~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----------VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDS 465 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----------CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCc
Confidence 3444444444444444455555544443211 1234444444444333 3444444444443221 333
Q ss_pred hhH-HHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 272 ISW-SAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 272 ~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..| +-.+.-+...++-+.|..+|+..+.. +..+ ...|..+|+-=+.-|++..+..+=+.|
T Consensus 466 ~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 222 12233333444444455555433222 1111 223444444444445555554444444
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.53 E-value=3.9 Score=37.87 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=47.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+..-|.+.|.+..|..-++.+++.-|+.+ ..+..+.++|.+.|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34568899999999999999999876654 45667888999999999999988777543
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=1.1 Score=42.89 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH--HH--HHHHHHHhccCCHHHH
Q 037414 253 CGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI--TF--VSLLYACSHTGLVEEG 325 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~--~~ll~a~~~~g~~~~a 325 (577)
.|+..+|-..++++.+ .|..+++-.=.+|..+|+.+.-...+++.... -.||.. +| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4444454444444443 34445555555555555555555555555433 122221 11 1222233344555555
Q ss_pred HHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 326 LRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
++.-++.++ +.| |.-.-.++...+--.|+..++.++..+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555544432 222 2223334444444555555555555544
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.33 E-value=0.59 Score=43.50 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC---CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQ---NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
|..++...|+++.|..+|..+.+..|+ -|..+.-|..+..+.|+.++|..+++++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444455555555555555444333 233444444445555555555555554443
No 237
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.31 E-value=2.8 Score=35.32 Aligned_cols=125 Identities=11% Similarity=0.074 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.. .++..+.+.. .++......++..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555556666666666665554 244445555666555432 2233333331 0112222334555555
Q ss_pred cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 355 AGRLDEALKLIESMSVEKDEGLWGALLGACRIH-KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 355 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
.+.++++.-++.+++. |...+..+..+ ++.+.|.+++.+ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 5666666666665542 11122222223 556666655543 223445555554443
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.23 E-value=0.49 Score=38.53 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=69.1
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCc---hhHHHHHHHHhccCCh
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-PQNP---GHYVLLSNVYANAGRW 424 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 424 (577)
++...|+++.|++.|.+. .+-| ....||.=..+++-.|+.++|..-+++++++- |... .+|+.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788999999888776 3333 66788888889999999999999999888874 4422 3566777788889999
Q ss_pred hHHHHHHHHHhhCCC
Q 037414 425 QDVAKIRDLMTRRRL 439 (577)
Q Consensus 425 ~~A~~~~~~m~~~g~ 439 (577)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888777664
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.14 E-value=0.36 Score=48.41 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV----KHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+...++.+..+|...|++++|...|+..++ +.|+. ..|..+..+|...|++++|.+.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788888899999999999999998873 56764 34788888999999999999988886
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.05 E-value=1.6 Score=36.63 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=38.3
Q ss_pred HHcCCHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 353 GRAGRLDEALKLIESM----SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+.|++++|.+.|+.+ +..| ....--.++.++.+.+++++|...+++.++++|.++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 3567777777777777 2222 223555567777788888888888888888877765
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.05 E-value=3.1 Score=42.19 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCCH--hHHHHHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-V-EKDE--GLWGALLGACR 385 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~--~~~~~ll~~~~ 385 (577)
..+..++.+.|+.++|.+.+++|.+++...........|+..|...+++.++..++.+-. + .|.. ..|++.+-.++
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345666778899999999999998765433345677789999999999999999998873 1 2333 36666654444
Q ss_pred hcCCH---------------HHHHHHHHHHHhcCCCCc
Q 037414 386 IHKNV---------------DLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 386 ~~g~~---------------~~a~~~~~~~~~~~p~~~ 408 (577)
..++. ..|.+.+.++.+.+|..+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44431 235577888888887654
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.73 Score=45.27 Aligned_cols=138 Identities=14% Similarity=0.014 Sum_probs=95.0
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
.+.|.+.|++..|...|++.+.. |. +.+.-+.++...... .-..++.-+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677777787777777775532 11 111112222222111 113355667777889999
Q ss_pred HHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH-HHHHHHH
Q 037414 358 LDEALKLIESM-SVE-KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV-AKIRDLM 434 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 434 (577)
+.+|++.-+.. ..+ +|....-.=..++...|+++.|+..|+++++.+|.|..+-..|+.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887776 334 45556666678899999999999999999999999988888888887776666554 7788888
Q ss_pred hhC
Q 037414 435 TRR 437 (577)
Q Consensus 435 ~~~ 437 (577)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 654
No 243
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.00 E-value=0.98 Score=46.34 Aligned_cols=29 Identities=17% Similarity=0.074 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
+...|..|.+...+.|+++-|++.|.+..
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 34455555555555555555555554443
No 244
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.82 E-value=9.6 Score=39.67 Aligned_cols=357 Identities=13% Similarity=0.075 Sum_probs=200.4
Q ss_pred CCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHH
Q 037414 57 SVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMV 130 (577)
Q Consensus 57 ~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li 130 (577)
..+...+..++.--.. +..++.++..++.. +|..-.-|-.....=.+.|..+.+.++|++-.. .++..|....
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYL 120 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3455556666665544 55666666666543 233333556666666678999999999998654 2555666665
Q ss_pred HHHH-hCCChhHHHHHHHHHHHC-CCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--
Q 037414 131 GGFS-KVADFINCFETFREFIRC-GMQL-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK-- 205 (577)
Q Consensus 131 ~~~~-~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 205 (577)
.-+. ..|+.+...+.|+..... |..- ....|...+.--...+++....++++++++.- ..-++..-.-|.+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHH
Confidence 5443 467888888888888763 3322 33456666766677888999999999988642 2223322222221
Q ss_pred -C------CCHHHHHHHHhhCCC--------CChhHHHHHHhc-------------------------------------
Q 037414 206 -C------KVIDDARQLFDQMPT--------RDLVTWTVMIGA------------------------------------- 233 (577)
Q Consensus 206 -~------g~~~~A~~~~~~m~~--------~~~~~~~~~i~~------------------------------------- 233 (577)
. -..+++.++=..... .....+..-+..
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 1 122222222111110 011111111110
Q ss_pred -------------CC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHHcCChHHHHHHHHH
Q 037414 234 -------------NK-FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK---NVISWSAMIAAYGYHGQGKKALDLFPM 296 (577)
Q Consensus 234 -------------~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ 296 (577)
.+ .+++..+|..-++.-.+.|+.+.+.-+|++..-| =...|--.+.-.-..|+.+-|..++..
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 11 1223445555555555556666665555555432 112233333333344666666666555
Q ss_pred hhhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHhC-C
Q 037414 297 MLSSRV--LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEAL---KLIESM-S 369 (577)
Q Consensus 297 m~~~g~--~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~ 369 (577)
..+--+ .|....+.+.+ +-..|+.+.|..+++...++ . |+. ..-..-+....+.|..+.+. .++... .
T Consensus 357 ~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred hhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 443322 23333333333 34568999999999999765 3 553 33334456667788888877 444443 1
Q ss_pred CCCCHhHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 370 VEKDEGLWGALLG-----ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 370 ~~p~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
-.-+..+...+.- -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 1223323332222 14556889999999999999999999999999888776653
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.76 E-value=3.3 Score=34.05 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=72.2
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC-ChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
.-.|.++++.++..+..++. +..-+|..|--....-+-+...++++.+-.- |... ..-...++
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-------------C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-------------CGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--------------S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchh-------------hcchHHHH
Confidence 44577888888888777653 3333343333333333334444444443220 1100 00011234
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
.+|++.|... ......+......|.-++-.+++.++.+ +-+|++.....+..||.+.|+..++.+
T Consensus 77 ~C~~~~n~~s--------------e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 77 ECYAKRNKLS--------------EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp HHHHHTT-----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHhcchH--------------HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4444444332 2344566777888888888888888765 346777777788888888888888888
Q ss_pred HHHHhhHhcCC
Q 037414 328 LFSSMWDDFAV 338 (577)
Q Consensus 328 ~~~~m~~~~~~ 338 (577)
++.++.++ |+
T Consensus 142 ll~~ACek-G~ 151 (161)
T PF09205_consen 142 LLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHT-T-
T ss_pred HHHHHHHh-ch
Confidence 88888754 55
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.70 E-value=4.9 Score=37.28 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=33.2
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNR---ITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|...-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445677777777777777777765 22122 23444556666677766666655544
No 247
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.59 E-value=12 Score=40.02 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=50.1
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 037414 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRL 328 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 328 (577)
-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+.. +.-|.-+..+|.+.|+.++|.++
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhh
Confidence 344455555555555555555555555555555555555554444433321 12233455555555666555555
Q ss_pred HHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 037414 329 FSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 329 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
+-..- |.. -.+.+|.+.|++.+|.++
T Consensus 767 iprv~---~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 767 IPRVG---GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhccC---ChH-------HHHHHHHHhccHHHHHHH
Confidence 54431 111 244555555555555544
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.56 E-value=1.6 Score=44.14 Aligned_cols=77 Identities=9% Similarity=0.079 Sum_probs=49.9
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 359 DEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.+|.++.++. .+.| |......+..+....++.+.|...|+++..++|+.+.+|........-.|+.++|.+.+++-.
T Consensus 321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444443 3333 455555555555666667777777777777777777777777777777777777777776643
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=6.9 Score=37.07 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=80.7
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAG 356 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 356 (577)
.......|+..+|..+|+........ +...-..+..+|...|+++.|..++..+-.+ ..-+ .....+-|..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~--~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ--AQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc--chhhHHHHHHHHHHHHHHHh
Confidence 34455677777777777777665322 2333445667777777777777777766322 1111 111122344555555
Q ss_pred CHHHHHHHHHhCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHhccC
Q 037414 357 RLDEALKLIESMSVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 357 ~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g 422 (577)
...+...+-++..-.| |...--.+...+...|+.+.|.+.+=.+++.+ -.+...-..|+..+.-.|
T Consensus 218 ~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5554444555553345 44455556666777777777777666665543 445556666666666655
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.49 E-value=16 Score=41.24 Aligned_cols=32 Identities=9% Similarity=-0.056 Sum_probs=19.3
Q ss_pred CCCCcchHHHHHHHHhcCC--ChHHHHHHHHHHHH
Q 037414 154 MQLDSYTLPFVIRACRDRK--DIVMGRLIHDIVLK 186 (577)
Q Consensus 154 ~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~ 186 (577)
..|+ .-.-.+|.++.+.+ .++.+.+....+..
T Consensus 787 ~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 787 RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3455 34456777777766 56666666555553
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.38 E-value=3.6 Score=34.56 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred HHHHcCChHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 280 AYGYHGQGKKALDLFPMMLSSR--VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
...+.|++++|.+.|+.+...= -+-....-..++.+|...+++++|...++..++-+.-.|+ ..|...+.+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 3344555555555555555431 0111223334555555555555555555555543322222 223333333332221
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 358 LDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+ ..|..+ +.+.|. +....|...|+++++..|++.
T Consensus 98 ~~---~~~~~~~~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DE---GSLQSFFRSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hh---hHHhhhcccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 11 111111 111111 224577788888888888864
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.23 E-value=2.2 Score=41.29 Aligned_cols=191 Identities=8% Similarity=0.042 Sum_probs=111.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHh-c------cC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhC-CCCCC---HHH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDR-M------RQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPN---RIT 308 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~-~------~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~---~~t 308 (577)
++..+.++.++.|.+++++..--. | .+ .-...|..+..++-+..++.+++.+-..-... |..|- ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 455566777777777766543221 1 11 11245666666666666666666665543332 22231 122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHh-------CCCCCCHhHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVR--P--DVKHYTCMVDLLGRAGRLDEALKLIES-------MSVEKDEGLW 377 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~p~~~~~ 377 (577)
..++-.|....+.++++.+.|+...+-..-. | ...+|-.|-..|.+..++++|.-+..+ .++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345566666777888888888775421111 1 246777888888888888876644433 3322111122
Q ss_pred H-----HHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 378 G-----ALLGACRIHKNVDLAEMAAKSLLERQ------PQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 378 ~-----~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
. .|.-+++..|..-.|.+.-++..++- +-.......+.++|...|+.+.|..-++
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2 33456788888888888877776542 2233445678888888888887766554
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.14 E-value=4.7 Score=33.98 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
.++..+.+.+.+.....+++.+...+. .+...++.++..+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444331 233344444444443
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.93 E-value=5.8 Score=34.48 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 144 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
+.++.+.+.+++|+...+..+++.+.+.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444444555555555555555555555544
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.78 E-value=7.2 Score=40.65 Aligned_cols=161 Identities=15% Similarity=0.140 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCH-----HHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNR-----ITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
....+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..++. ....+.+.+++..+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666666788888888888766542 22211 234444444433 45788999999999754 4776
Q ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHhCC-CC-----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 343 KHYTCM-VDLLGRAGRLDEALKLIESMS-VE-----KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 343 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
..|... ...+...|++++|.+.|++.- .+ -....+--+.-.+....++++|...|.++.+.+.-+...|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 655443 356677899999999999752 11 12233444555677889999999999999998766666665444
Q ss_pred -HHHhccCCh-------hHHHHHHHHHhh
Q 037414 416 -NVYANAGRW-------QDVAKIRDLMTR 436 (577)
Q Consensus 416 -~~~~~~g~~-------~~A~~~~~~m~~ 436 (577)
-+|...|+. ++|.+++.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445677888 888888877754
No 256
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=9.9 Score=36.05 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=23.6
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
...+++.++..++....... +-+....-.|+.+|...|+.+.|..+++.++
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555444432 2223334444445555555555555555444
No 257
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.28 E-value=2.3 Score=41.15 Aligned_cols=142 Identities=10% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCChhhHHHHHHhccC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CC----ChHHHHHHHhcCCCC----
Q 037414 57 SVDPKFFISSLLSCRN-----IFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL--HK----ALTDAHALFNGMKER---- 121 (577)
Q Consensus 57 ~p~~~~~~~ll~a~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~f~~m~~~---- 121 (577)
.....+++++|..-.. ++....+++.|.+.|+..+.+++-+....... .. ....|..+|+.|++.
T Consensus 57 ~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 57 GNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 3456677777777666 77888999999999999888777664443333 22 345788999999863
Q ss_pred ---CcchHHHHHHHHHhCCC----hhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhcCCC--hHHHHHHHHHHHHcCCC
Q 037414 122 ---DSVSWSVMVGGFSKVAD----FINCFETFREFIRCGMQLDSY--TLPFVIRACRDRKD--IVMGRLIHDIVLKSGLD 190 (577)
Q Consensus 122 ---~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~ 190 (577)
+-.++..|+.. ...+ .+.+..+|+.+...|...+.. ....++..+..... ..++..+++.+.+.|++
T Consensus 137 Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 44456666654 3333 356788899999888776443 34444444433333 34678889999999988
Q ss_pred CcHHHHHHHH
Q 037414 191 IDQFVCAALV 200 (577)
Q Consensus 191 ~~~~~~~~li 200 (577)
+....|..+.
T Consensus 215 ik~~~yp~lG 224 (297)
T PF13170_consen 215 IKYMHYPTLG 224 (297)
T ss_pred cccccccHHH
Confidence 8777666543
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=92.06 E-value=8.8 Score=38.94 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=101.1
Q ss_pred hhH--HHHHHHHHHcC-----ChHHHHHHHHHhhh-CCCCCCHH-HHHHHHHHHhc---------cCCHHHHHHHHHHhh
Q 037414 272 ISW--SAMIAAYGYHG-----QGKKALDLFPMMLS-SRVLPNRI-TFVSLLYACSH---------TGLVEEGLRLFSSMW 333 (577)
Q Consensus 272 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 333 (577)
..| ...+.+..... ..+.|+.+|.+... +.+.|+-. .|..+..++.. .....+|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 66666655422 34678889999882 23566643 33333222211 234556677777665
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 334 DDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 334 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+ +.| |......+..++.-.|+++.|..+|++. .+.||.. +|....-.+.-.|+.++|.+.+++.++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3 334 4566666666677788899999999998 5677654 66655566777899999999999999999986543
Q ss_pred --HHHHHHHHhccCChhHHHHHH
Q 037414 411 --YVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 411 --~~~l~~~~~~~g~~~~A~~~~ 431 (577)
....+..|... ..++|.+++
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 33344466655 456666665
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.02 E-value=0.36 Score=29.09 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 375 GLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.+|..+...+...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35677777788888888888888888887775
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.00 E-value=3.3 Score=33.92 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
.+..|+.++|++.|.+.+.. .+-....||.-..++.-.|+.++|.+-+.+.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555554443 222344455555555555555555555554443
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.95 E-value=0.51 Score=28.26 Aligned_cols=32 Identities=28% Similarity=0.157 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566677777777777877777777777764
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=10 Score=34.90 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCchhHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESMS-------VEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLER----QPQNPGHYVL 413 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 413 (577)
...-..|.+..++++|-..|.+-+ --|+. ..+-+.|-.+....|+..|+..++.--+. .|.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 333445556666666655554431 11222 12334444455556777777777664433 2555566666
Q ss_pred HHHHHhccCChhHHHHHH
Q 037414 414 LSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~ 431 (577)
|+.+|- .|+.+++.++.
T Consensus 234 LL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHhc-cCCHHHHHHHH
Confidence 776664 46666665554
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.81 E-value=13 Score=35.79 Aligned_cols=17 Identities=24% Similarity=-0.162 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 037414 384 CRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~ 400 (577)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45566677776666643
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.74 E-value=14 Score=38.47 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=100.6
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc-----HHHHHHHHHHHHh----CCCHHH
Q 037414 142 CFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDID-----QFVCAALVDMYAK----CKVIDD 211 (577)
Q Consensus 142 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~-----~~~~~~li~~~~~----~g~~~~ 211 (577)
..-+|.-+... ++|. +..++...+=.||-+.+.+.+.+..+.+ +... .-+|...+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555553 3333 4456666666677777877777665533 1111 1223333333332 456778
Q ss_pred HHHHHhhCCC--CChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------CChhhHHHHHHHHH
Q 037414 212 ARQLFDQMPT--RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-------KNVISWSAMIAAYG 282 (577)
Q Consensus 212 A~~~~~~m~~--~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~ 282 (577)
|.++++.+.+ |+..-|.- .-...+...|++++|.+.|+.... -....+--+.-.+.
T Consensus 252 a~~lL~~~~~~yP~s~lfl~---------------~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLF---------------FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHH---------------HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 8888888766 44433332 235667778888888888886542 12233444566677
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HhccCCH-------HHHHHHHHHhh
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA-CSHTGLV-------EEGLRLFSSMW 333 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~-------~~a~~~~~~m~ 333 (577)
-.+++++|.+.|..+.+.. .....+|.-+..+ +...|+. ++|.++|.++.
T Consensus 317 ~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7888888888888888753 3344444433332 3345555 77888887764
No 265
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.73 E-value=7.3 Score=33.44 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=59.0
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
..-...++.+++..++..+. -+.|..... ..-...+.+.|++.+|.++|+++ .-.|....-.+|+..|....+-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33456678888888888884 456653222 22233467889999999999998 33455555667777777665555
Q ss_pred HHHHHHHHHHhcCCC
Q 037414 392 LAEMAAKSLLERQPQ 406 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~ 406 (577)
.=....+++++.+++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 555666667766654
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.67 E-value=4.1 Score=38.10 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-HhHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKD-EGLWGALL 381 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll 381 (577)
.|+.-+..+ ..|++..|.+.|...++++.-.+ ....+--|...+...|++++|..+|..+ |..|- +..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555443 45667777777777765431111 1234445667777777777777777666 22222 23555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
......|+.++|...++++.+..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66677777888888888887777776543
No 267
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=10 Score=41.06 Aligned_cols=175 Identities=10% Similarity=0.069 Sum_probs=102.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH---HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA---MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
..-+++..+-..++.|..+-+.-..+....-+. -.+.+-+.|++++|...|-+-... +.|.. ++.-|....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHH
Confidence 345777777777888877776654322222222 233455678888888888776543 34432 445555666
Q ss_pred CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD-EGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
...+-..+++.+.++ |+ .+..+-..|+.+|.+.++.++-.++++... +-. ..-....+..|.+.+-.++|..+..+
T Consensus 412 ~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 666666777777554 55 455666788888888888888887777653 110 11234556666666666666666554
Q ss_pred HHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 400 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
... +. ..|-..+...|++++|.+.++.|
T Consensus 489 ~~~----he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK----HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc----CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 332 11 12223344556666666665544
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.38 E-value=30 Score=39.29 Aligned_cols=110 Identities=17% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
+.--+.|.+++|..++.-=.+.-...|.+-...+.+.+.+++|.-.|+..-+ ..-.+.+|...|++++|..
T Consensus 916 n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 916 NYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHH
Confidence 3333455555555444322222223333334444445566666655554322 1123456666666666666
Q ss_pred HHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 328 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 987 ~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 987 LAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 6665521 11111222345566666666666666666555
No 269
>PRK15331 chaperone protein SicA; Provisional
Probab=91.09 E-value=1.1 Score=38.49 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=45.2
Q ss_pred cCCChHHHHHHHhcCC--CC-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHH
Q 037414 104 LHKALTDAHALFNGMK--ER-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLI 180 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 180 (577)
..|++++|..+|.-+. .+ |..-|..|..++-..+++++|+..|...-..+. -|...+-..-.++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 4566666666665432 22 444455555556666666666666655544332 2334444455555566666666666
Q ss_pred HHHHHH
Q 037414 181 HDIVLK 186 (577)
Q Consensus 181 ~~~~~~ 186 (577)
|...++
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 665554
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.06 E-value=12 Score=38.24 Aligned_cols=63 Identities=17% Similarity=0.062 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
=..+..++.+.|+.++|++.++++++..|. +......|++.+...+++.++..++.+--+..+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 344666677788888888888888776654 344667788888888888888888776544333
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.88 E-value=1.3 Score=42.05 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++..++..+...|+.+.+.+.++++.+.+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 5556667777778888888888888888888888888888888888888888888877765
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=6.9 Score=37.62 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=95.3
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhCCCH
Q 037414 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA----ALVDMYAKCKVI 209 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~ 209 (577)
.-+|...+|-..++++++. .+.|...+...=.+|.-.|+...-+..+++++.. ..+|...|. .+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3467778888888888775 4557777777777888888887777777777654 234443333 333344578888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh-----hhHHHHHHHHH
Q 037414 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV-----ISWSAMIAAYG 282 (577)
Q Consensus 210 ~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~-----~~~~~li~~~~ 282 (577)
++|++.-++..+-|.. |...-.++...+-..|+..++.++..+-.. ++. .-|=-..-.+.
T Consensus 192 ~dAEk~A~ralqiN~~-------------D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~i 258 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-------------DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHI 258 (491)
T ss_pred hhHHHHHHhhccCCCc-------------chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhh
Confidence 8888888877664432 444555667777778888888887776553 110 01112223345
Q ss_pred HcCChHHHHHHHHH
Q 037414 283 YHGQGKKALDLFPM 296 (577)
Q Consensus 283 ~~g~~~~A~~l~~~ 296 (577)
..+.++.|+++|+.
T Consensus 259 E~aeye~aleIyD~ 272 (491)
T KOG2610|consen 259 EGAEYEKALEIYDR 272 (491)
T ss_pred cccchhHHHHHHHH
Confidence 56788888888875
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.53 E-value=3.8 Score=35.40 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=75.3
Q ss_pred HcCCChHHHHHHHhcCCCCCcchHHHHH-----HHHHhCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHH--HhcCCCh
Q 037414 103 ALHKALTDAHALFNGMKERDSVSWSVMV-----GGFSKVADFINCFETFREFIRCGMQLDSY-TLPFVIRA--CRDRKDI 174 (577)
Q Consensus 103 ~~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~--~~~~~~~ 174 (577)
+..+..++|+.-|..+.+.+.-+|-.|. ....+.|+...|+..|.+.-...-.|-.. -..-|=.+ +...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 4556677777777777665555554443 34566788888888888876654333332 11112112 3456777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR 222 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 222 (577)
+......+-+-..+-+.....-.+|.-+-.+.|++.+|.+.|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 766666655544444445566677777778889999999998887653
No 274
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=90.52 E-value=13 Score=33.49 Aligned_cols=222 Identities=15% Similarity=0.048 Sum_probs=147.1
Q ss_pred CChHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLD-IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~ 250 (577)
+....+...+......... .....+......+...+.+..+...+...... . ........+..+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~ 105 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--E---------LLPNLAEALLNLGLLL 105 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--h---------hccchHHHHHHHHHHH
Confidence 3444444555544443321 13566777777888888888888777765431 0 0122344556667777
Q ss_pred HhcCCHHHHHHHHHhccC--CCh-hhHHHHHH-HHHHcCChHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHhccCCHHH
Q 037414 251 AKCGSIDSAREIFDRMRQ--KNV-ISWSAMIA-AYGYHGQGKKALDLFPMMLSSRV--LPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
...+++..+...+..... ++. ........ .+...|+++.|...+.+...... ......+......+...++.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185 (291)
T ss_pred HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence 778888888888887765 222 22333333 68889999999999999855221 1223344444445677889999
Q ss_pred HHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
+...+....+. ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+..
T Consensus 186 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 186 ALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988743 223 3677788888888899999999988887 44454 3455555555557778999999999999
Q ss_pred hcCCC
Q 037414 402 ERQPQ 406 (577)
Q Consensus 402 ~~~p~ 406 (577)
+..|.
T Consensus 264 ~~~~~ 268 (291)
T COG0457 264 ELDPD 268 (291)
T ss_pred HhCcc
Confidence 88886
No 275
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.28 E-value=0.56 Score=39.87 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=51.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhH
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILG 243 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~ 243 (577)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++....-|+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~------------------- 73 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDL------------------- 73 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-C-------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCH-------------------
Confidence 4556666677777777777777666556677778888888888777777777764332221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
..++..+.+.|.+++|.-++.++.
T Consensus 74 ~~~~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 74 DKALRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp THHHHHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHHHHHhcchHHHHHHHHHHcc
Confidence 124455555555555555555543
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.87 E-value=2.3 Score=40.27 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhh-----CCCCCCHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLS-----SRVLPNRITFVS 311 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 311 (577)
..++..++..+..+|+.+.+...++++.. -+...|..+|.+|.+.|+...|+..|+++.. .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788889999999999999888875 3556899999999999999999999888765 367776665554
Q ss_pred HHHH
Q 037414 312 LLYA 315 (577)
Q Consensus 312 ll~a 315 (577)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.71 E-value=23 Score=35.18 Aligned_cols=148 Identities=11% Similarity=-0.026 Sum_probs=80.2
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP---NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VK 343 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 343 (577)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-++|...++..++. .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 445678888899999999999999999887754211 2233334455566778888998888877652 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLI-ESMSVEKDEGLWGALLGACRIH------KNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
....+...+.. ..+.....- .......-...+..+..-+... ++.+++...|..+.+..|.....|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 000000000 0000000011222222223333 77888899999999998887777777666
Q ss_pred HHh
Q 037414 417 VYA 419 (577)
Q Consensus 417 ~~~ 419 (577)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 654
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.53 E-value=16 Score=36.26 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=104.1
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC---CCC-CHHHHHHHHHHHhcc-
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR---VLP-NRITFVSLLYACSHT- 319 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p-~~~t~~~ll~a~~~~- 319 (577)
..+..+.|+++...+....... ++...+.++... ..|+.+++....+++...- ..+ ....|........+.
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 5677788899887777776665 334444444443 7788888888877765531 000 111122222222222
Q ss_pred --CCHHHHHHHHHHhh--------------Hh-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHhHHHHHH
Q 037414 320 --GLVEEGLRLFSSMW--------------DD-FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS-VEKDEGLWGALL 381 (577)
Q Consensus 320 --g~~~~a~~~~~~m~--------------~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll 381 (577)
..++++.++..... ++ ....++..++..++..-. -++..+. ......+|..+.
T Consensus 83 ~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a 153 (352)
T PF02259_consen 83 QLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFA 153 (352)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHH
Confidence 22333333331110 00 012223333333322100 0111111 123455899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCC----CCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQP----QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+++.|.++.|...+.++.+.++ ..+.....-+......|+..+|...++...+..
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988652 245677778889999999999999998888743
No 279
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.50 E-value=27 Score=35.80 Aligned_cols=175 Identities=11% Similarity=0.095 Sum_probs=122.1
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
.|....-+++..+.+.-+..-.+.+-.+|.. .+-..|..++..|.++ ..++-..+|+++.+.. .|...+..-+.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 3455566788888888888888888888875 6777899999999999 5678899999998864 344445544444
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPD------VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGACR 385 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 385 (577)
+...++.+.+..+|..++.. +-|. .+.|.-++..- ..+.+....+...+ +...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44558888999999888643 3342 24566555432 34556666665555 33334556666667788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...++++|++++..+++.+..+..+-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 8999999999999998887666555555554443
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.24 E-value=1.2 Score=42.06 Aligned_cols=102 Identities=11% Similarity=0.127 Sum_probs=76.5
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC-------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 037414 85 AGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER-------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157 (577)
Q Consensus 85 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 157 (577)
..|.+.+..+...++..-....+++++...+-++... +.. -.+.++. +-.-++++++.++..=...|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccc
Confidence 3455666667777777777778899998888777542 111 1222332 334567799999999899999999
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 158 SYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 158 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
.++++.+|+.+.+.+++..|.++...|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877664
No 281
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.02 E-value=67 Score=39.64 Aligned_cols=311 Identities=11% Similarity=0.026 Sum_probs=167.5
Q ss_pred HHHHHHHcCCChHHHHHHHhcC----CCC--CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 97 KLLYIYALHKALTDAHALFNGM----KER--DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
.|..+-.+++.+..|.-.|++- .+. ...-|-.+...|..-++++....+...-.. .|+ +...+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3444555778888888888873 221 122344444588888888887776654111 122 3334444566
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMY 250 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~ 250 (577)
.|+++.|...|+.+.+.+ ++....++.++..-...|.+..+....+........- ....++.=+.+-
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~------------~~~~~s~~~eaa 1528 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEE------------VDELNSLGVEAA 1528 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHH------------HHHHHHHHHHHH
Confidence 788888888898888765 3336667766666666777777776665554321110 011122234445
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHH--HHHHHHcC--ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 251 AKCGSIDSAREIFDRMRQKNVISWSAM--IAAYGYHG--QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
.+.+++|....... ..+..+|.+. +..+.+.. +.-.-.++.+.+.+.-+.| +.+|+..|.+..+.
T Consensus 1529 W~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y 1597 (2382)
T KOG0890|consen 1529 WRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSY 1597 (2382)
T ss_pred hhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHH
Confidence 77888887776655 5556666654 22222222 2111222333333221111 12222222221211
Q ss_pred HHHHHh----------hHhcCCCCCH------HHHHHHH---HHHHHcCCHHHHH-HHHHhCCCCC-----CHhHHHHHH
Q 037414 327 RLFSSM----------WDDFAVRPDV------KHYTCMV---DLLGRAGRLDEAL-KLIESMSVEK-----DEGLWGALL 381 (577)
Q Consensus 327 ~~~~~m----------~~~~~~~p~~------~~~~~li---~~~~~~g~~~~A~-~~~~~m~~~p-----~~~~~~~ll 381 (577)
++.-.+ ....+..++. ..|..-+ +.+.+....=-|. +.+.....+| -..+|-...
T Consensus 1598 ~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsA 1677 (2382)
T KOG0890|consen 1598 EILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSA 1677 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHH
Confidence 111110 0011222221 1222222 2222211111111 1111111122 234899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+.++..|.++.|....-++.+..++ ..+...+......|+-..|..++++-.+...
T Consensus 1678 riaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1678 RIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9999999999999998888877744 6888999999999999999999998886543
No 282
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=38 Score=36.66 Aligned_cols=165 Identities=8% Similarity=0.049 Sum_probs=83.0
Q ss_pred HHHHHcCCChHHHHHHHhcCCCC-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCC
Q 037414 99 LYIYALHKALTDAHALFNGMKER-----DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD 173 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 173 (577)
|+-+.+.+.+++|+..-+..... -...+...|..+...|++++|-...-.|... +..-|.-.+.-++..++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45556667777777766655432 1234667777777777777777777666553 33444444444444444
Q ss_pred hHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc-----CCCCcchhhHHHHHH
Q 037414 174 IVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA-----NKFLLDVILGTAVID 248 (577)
Q Consensus 174 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~-----~g~~~~~~~~~~Li~ 248 (577)
......+ +-......+..+|..++..+.. .+...=.++..+-+ .+..+-.+.+.+ ....-+..+...|+.
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp-~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~ 513 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWP-GHLYSVLTIISATEPQIKQNSESTALLEVLAH 513 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCC-hhhhhhhHHHhhcchHHHhhccchhHHHHHHH
Confidence 3322111 1111111234455555554444 11111111111111 011111111111 011112334455999
Q ss_pred HHHhcCCHHHHHHHHHhccCCChh
Q 037414 249 MYAKCGSIDSAREIFDRMRQKNVI 272 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~~~~ 272 (577)
.|...+++++|..++-..+++++.
T Consensus 514 LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 514 LYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHccChHHHHHHHHhccChHHH
Confidence 999999999999999998876554
No 283
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.62 E-value=9.4 Score=33.12 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=23.7
Q ss_pred HHcCCHHHHHHHHHhCCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 353 GRAGRLDEALKLIESMSVEKD---EGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
...|.+++...-.+.+....+ ...-.+|.-+-.+.|++..|...|+++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555555555555421111 12333444444555666666666655544
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.59 E-value=1.9 Score=38.17 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=67.7
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 352 LGRAGRLDEALKLIESM-SVEK------DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
+.+.|++++|..-|... ..-| -.+.|..-..++.+.+.++.|+.-..+.++++|....+..--..+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 55678888888777665 1112 1234444456678889999999999999999998877777778899999999
Q ss_pred hHHHHHHHHHhhCCC
Q 037414 425 QDVAKIRDLMTRRRL 439 (577)
Q Consensus 425 ~~A~~~~~~m~~~g~ 439 (577)
++|..-++.+.+...
T Consensus 185 eealeDyKki~E~dP 199 (271)
T KOG4234|consen 185 EEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999887553
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.38 E-value=7.1 Score=34.52 Aligned_cols=58 Identities=17% Similarity=0.163 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCh------hhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQKNV------ISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
.+..+.+.|++.|+.+.|.+.|.++.+..+ ..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777777777777777665321 2355566666666777666666665543
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.12 E-value=8.6 Score=34.02 Aligned_cols=94 Identities=13% Similarity=0.006 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--cchHHHHHHHHhcCCChHHHHHHHHHHHHcCC---CCc----HHH
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIRCGMQLD--SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGL---DID----QFV 195 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~---~~~----~~~ 195 (577)
.+..+..-|++.|+.++|++.|.++.+....|. ...+..++..+...+++..+.....++...-- +++ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345555555556666666666655555433332 22344455555555666655555544433211 111 223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
|..|. +...|++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 33333 234678999888887765
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.78 E-value=1.1 Score=27.51 Aligned_cols=24 Identities=13% Similarity=-0.069 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
|..|...|...|++++|+.++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 288
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.47 E-value=26 Score=33.18 Aligned_cols=59 Identities=15% Similarity=0.005 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+.....|...|.+.+|.++.++++..+|-+...+..|++.++..|+--.|.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446789999999999999999999999999999999999999998888888887754
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.22 E-value=1.2 Score=27.25 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHh
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.13 E-value=4.3 Score=34.82 Aligned_cols=69 Identities=22% Similarity=0.165 Sum_probs=35.6
Q ss_pred HcCCHHHHHHHHHhC-CCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 354 RAGRLDEALKLIESM-SVEKDEGLWGALL-GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
+.++.+++..+++.+ -++|.......+- ..+...|++.+|.++++.+.+..|..+..-..+..++...|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 456666666666666 2344433222221 12456667777777777766555555443333433333333
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.94 E-value=18 Score=39.29 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHH----HHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERDSVSWSVM----VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
...-+++..+...++.|..+-+.-.. |...-..+ .+-+-+.|++++|...|-+-... +.|. .++.-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 34556777777788888877765433 22222222 23445678888888887665543 3332 24555555
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
......--.+++.+.+.|+. +...-+.|+.+|.+.++.++-.+..+...
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 55555556677777788754 44556778888888888888887777665
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=2.9 Score=39.71 Aligned_cols=98 Identities=13% Similarity=0.172 Sum_probs=71.0
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHH
Q 037414 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT 308 (577)
Q Consensus 236 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 308 (577)
.+....+...++..-....+++++...+-++.. ++...+ +.+..+. .-++++++.++..=+..|+-||..|
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 333444555566666667788888888777753 222211 2233222 3467899999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
++.+++.+.+.+++.+|.++...|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999888777654
No 293
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.80 E-value=24 Score=34.49 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=62.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHhh---HhcCCCCCHHHHHH
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSSRV-----LPNRITFVSLLYACSHTGLVEEGLRLFSSMW---DDFAVRPDVKHYTC 347 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ 347 (577)
+|..++...+.++++++.|+...+.-- ......+..|-+.|.+..+.++|.-+..... ..++++.-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555566666666665543211 1112345556666666666666554443322 22233222222332
Q ss_pred H-----HHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 348 M-----VDLLGRAGRLDEALKLIESM-------SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 348 l-----i~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+ .-+|...|++.+|.+.-++. +.+| -......+...|+..|+.+.|..-++++..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 23455556555555444432 3222 122445556667777777777776666543
No 294
>PRK09687 putative lyase; Provisional
Probab=86.63 E-value=31 Score=33.12 Aligned_cols=80 Identities=9% Similarity=0.012 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCcchHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF----INCFETFREFIRCGMQLDSYTLPFV 164 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 164 (577)
.+|..+.-..+..+...|..+-...+..-+..+|...-...+.++.+-|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555565555433333333323334555545555556665553 3455555555322 2343333344
Q ss_pred HHHHhc
Q 037414 165 IRACRD 170 (577)
Q Consensus 165 l~~~~~ 170 (577)
+.+++.
T Consensus 112 ~~aLG~ 117 (280)
T PRK09687 112 INATGH 117 (280)
T ss_pred HHHHhc
Confidence 444433
No 295
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.58 E-value=2 Score=27.71 Aligned_cols=27 Identities=7% Similarity=0.279 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIR 151 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 151 (577)
.|..+...|.+.|++++|.++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555
No 296
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.55 E-value=1.5 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
+|..+...+...|+.++|...+++.++.+|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777663
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.54 E-value=4.4 Score=34.19 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.++.++++.+++.+.-+.|+.+..-..-...+...|+|++|.+++++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555555555555554455555555555555555555554443
No 298
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.43 E-value=13 Score=28.96 Aligned_cols=61 Identities=20% Similarity=0.243 Sum_probs=41.3
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 310 (577)
+..+.+.|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3445677888888888888877888888766543 4566666666676776665 44444444
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.42 E-value=53 Score=35.62 Aligned_cols=129 Identities=11% Similarity=0.129 Sum_probs=81.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhc
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRD 170 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 170 (577)
-..++...|+.+.-.|++++|-.+.-.|...+..-|.--+..+...++......+ +.......+...|..++..+..
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 3457888899999999999999998888888888888888888877776544333 2221111234455555555544
Q ss_pred CCChHHH--------------HH----HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh
Q 037414 171 RKDIVMG--------------RL----IHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 171 ~~~~~~a--------------~~----~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
.+...- .. +..+..+. .-+......|+..|...+++.+|..++-...+.++.
T Consensus 468 -~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 468 -SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred -HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 111110 00 01111111 112234455999999999999999999888776543
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.20 E-value=1.3 Score=26.76 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=24.9
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 037414 181 HDIVLKSGLDIDQFVCAALVDMYAKCKVIDDAR 213 (577)
Q Consensus 181 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 213 (577)
+++.++.. |.+..+|+.|..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555554 667889999999999999999886
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.19 E-value=31 Score=33.40 Aligned_cols=131 Identities=8% Similarity=0.139 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhhHhcCCC--CCHHHHHHHHHHHHHcCCH
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSH--TG----LVEEGLRLFSSMWDDFAVR--PDVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~ 358 (577)
+++.+.+++.|.+.|++-+..+|.+....... .. ...++..+|+.|.+++.+- ++...+..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44567788899999998888777654333322 22 3567899999998776553 334455555433 33333
Q ss_pred ----HHHHHHHHhC---CCCC-CH-hHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 359 ----DEALKLIESM---SVEK-DE-GLWGALLGACRIHKN--VDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 359 ----~~A~~~~~~m---~~~p-~~-~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
+.++.+|+.+ ++.. |. .....++..+..... ...+.++++.+.+.+..-...+...+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3344555544 4333 33 344444443332222 346677777777776432233333333333
No 302
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.15 E-value=46 Score=33.74 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHH-HHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW-TVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ 268 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~ 268 (577)
.++..++....+.++...|.+.+.-+..-|+..| . ..+-.. -..|.++.+. .-+..+=..+++....
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs-----~Kllls---~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs 370 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVS-----EKLLLS---PKVLQDIVCEDDESYTKLRDYLNLWEEIQS 370 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhh-----hhhhcC---HHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 4567777778888888888777665543222211 1 001011 1122222221 1122223344444443
Q ss_pred CCh-----hhHHHH-HHHHHHcCC-hHHHHHHHHHhhhCCCCCC-HH----HHHHHHHHHhcc---CCHHHHHHHHHHhh
Q 037414 269 KNV-----ISWSAM-IAAYGYHGQ-GKKALDLFPMMLSSRVLPN-RI----TFVSLLYACSHT---GLVEEGLRLFSSMW 333 (577)
Q Consensus 269 ~~~-----~~~~~l-i~~~~~~g~-~~~A~~l~~~m~~~g~~p~-~~----t~~~ll~a~~~~---g~~~~a~~~~~~m~ 333 (577)
.|+ +.|-.- ..-+=+.|. -++|+++++...+- .|. .. ++..+=.+|.++ ..+.+-..+-+-+
T Consensus 371 ~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi- 447 (549)
T PF07079_consen 371 YDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFI- 447 (549)
T ss_pred hcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-
Confidence 332 122111 122333444 66777777777653 222 22 222222233322 2233333333333
Q ss_pred HhcCCCCC----HHHHHHHHHH--HHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 334 DDFAVRPD----VKHYTCMVDL--LGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 334 ~~~~~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
++.|+.|- .+.-|.|.++ +-..|++.++.-.-.-+ .+.|++.+|..+.-......++++|..++..
T Consensus 448 ~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 448 TEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 44577663 4555666654 44567777776433333 4567777777777777777777777777654
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.89 E-value=6.7 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 368 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 356789999999999999999999999999988776544444665554
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.60 E-value=6.6 Score=30.30 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 368 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+-|++.+..+.+++|++.+|+..|.++++-+...-..+...|-.++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 356788888999999999999999999999887755433444554443
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.52 E-value=8.2 Score=30.14 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.+..+.+ +....|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 346677777777788899999999999999999999999999998866544 33337777664
No 306
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.05 E-value=70 Score=34.91 Aligned_cols=52 Identities=8% Similarity=-0.035 Sum_probs=23.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.....++++.+...+..|-+.....+..+.-+.+++...|+.++|..+|+..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334455554444444443222223334444555544455555555555444
No 307
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=83.41 E-value=42 Score=33.26 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q 037414 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGAL------------LGACRIHKNVDLAEMAAKSLLERQPQN------ 407 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~p~~------ 407 (577)
..|.+.+-.+|++++|..++.+.+++ ||.++ ++.|...+|+-.|.-+-+++....-+.
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34566777899999999999988643 33332 467888999999998888887654222
Q ss_pred -chhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEE
Q 037414 408 -PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKI 454 (577)
Q Consensus 408 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~ 454 (577)
...|..++....+.+.+=.+-+.++..-+-|-.+.....|+.+...+
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhh
Confidence 24688999999999999999999999988776555445576654433
No 308
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.33 E-value=35 Score=30.94 Aligned_cols=179 Identities=15% Similarity=0.133 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHhcc--CCC-hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 254 GSIDSAREIFDRMR--QKN-VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 254 g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|-++-|+-=|.+.. .|+ +..||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++--.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 44444444444432 233 4578888888889999999999999888764333322333222 3334578887776555
Q ss_pred HhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 037414 331 SMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALK-LIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN-- 407 (577)
Q Consensus 331 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-- 407 (577)
..-+.-.-.|-...|--++. +.-++.+|.. +.++.. ..|..-|...|-.+--..-.+ +.+++++.+.-.++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTS 231 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHH
Confidence 54332122232333333332 3345666654 334432 334455555444432211111 22333333322222
Q ss_pred -----chhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 408 -----PGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 408 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
.++|.-|..-|...|+.++|..+|+.....++
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 46899999999999999999999987765443
No 309
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.12 E-value=9.4 Score=29.50 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+....+.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456777777777778889999999999999999999999999998854433 34556666654
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.04 E-value=11 Score=31.93 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=36.4
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHhHHHHHHHHHHh
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDV---KHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 386 (577)
...++.+++..+++.|. -+.|+. .++... .+.+.|++++|.++|++..-.+ ....-..|+..|..
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34677777777777774 345542 333333 3567777888888887773232 33333344444443
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.02 E-value=39 Score=35.48 Aligned_cols=139 Identities=17% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhh
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS 273 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~ 273 (577)
...+.++..+.+.|..++|+++-..-.+ --+...+.|+++.|.++..+. .+..-
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D~d~------------------------rFelal~lgrl~iA~~la~e~--~s~~K 668 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTDPDQ------------------------RFELALKLGRLDIAFDLAVEA--NSEVK 668 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCChhh------------------------hhhhhhhcCcHHHHHHHHHhh--cchHH
Confidence 3456677777777777777765221111 133455778888887776553 45667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 353 (577)
|..|..+..+.|++..|.+.|.+... |..|+-.+...|+-+.-..+-... ++.|. .|...-+|.
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~-~~~g~------~N~AF~~~~ 732 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA-KKQGK------NNLAFLAYF 732 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH-Hhhcc------cchHHHHHH
Confidence 88999999999999999988887654 445666666777765444444443 22232 223334566
Q ss_pred HcCCHHHHHHHHHhCCCCCCH
Q 037414 354 RAGRLDEALKLIESMSVEKDE 374 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~p~~ 374 (577)
..|+++++.+++.+-+.-|..
T Consensus 733 l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 733 LSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred HcCCHHHHHHHHHhcCcCcHH
Confidence 788899988888877544443
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.81 E-value=3 Score=24.51 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=16.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
+..++...|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455566666666666666666664
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.70 E-value=23 Score=35.87 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=36.0
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH
Q 037414 353 GRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
...|.++.+...+... -+.....+...+++.....|++++|....+.|+..+..+++........-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 3444555554444433 11123334444445455555555555555555444433333332222223333444555555
Q ss_pred HHHHh
Q 037414 431 RDLMT 435 (577)
Q Consensus 431 ~~~m~ 435 (577)
++++.
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 54444
No 314
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.70 E-value=23 Score=33.68 Aligned_cols=56 Identities=9% Similarity=0.198 Sum_probs=25.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCCHhHHHHHHHHHHhcCCHH
Q 037414 336 FAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS----VEKDEGLWGALLGACRIHKNVD 391 (577)
Q Consensus 336 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~ 391 (577)
++-.++..+...+++.+++.+++.+-.++++... -..|...|..+|..-...||..
T Consensus 196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 3344444444555555555555555555544431 1113344444444444444433
No 315
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=81.03 E-value=3.1 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555666666666666655554
No 316
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=80.93 E-value=54 Score=31.44 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHcCChH---HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGK---KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+..|+.... -....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~--~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD--HSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc--cccchHHHHH
Confidence 5667788888877654 566677777554222 234454566777778999999999999987533 1223333333
Q ss_pred HH---HHHcCCHHHHHHHHHhC---CCCCCHh-HHHH-HHHH---HHhcCC------HHHHHHHHHHHHhc--CCCCchh
Q 037414 350 DL---LGRAGRLDEALKLIESM---SVEKDEG-LWGA-LLGA---CRIHKN------VDLAEMAAKSLLER--QPQNPGH 410 (577)
Q Consensus 350 ~~---~~~~g~~~~A~~~~~~m---~~~p~~~-~~~~-ll~~---~~~~g~------~~~a~~~~~~~~~~--~p~~~~~ 410 (577)
.. +.... ...|...++.+ .+.|... .... ++.. ....++ ++....+++.+.+. .|-++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33 34333 34555555444 2233322 1111 1111 122222 34444445533332 2334333
Q ss_pred HHHH-------HHHHhccCChhHHHHHHHH
Q 037414 411 YVLL-------SNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 411 ~~~l-------~~~~~~~g~~~~A~~~~~~ 433 (577)
-..+ +..+.+.++|++|.+.++.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 2222 3346678999999998874
No 317
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=46 Score=30.61 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHhhHhcC-CCCCHHHHHHHHH---HHHHcCCHHHHHHHHHhC---CCCCCHhHHHH---HHHH--HHhc
Q 037414 320 GLVEEGLRLFSSMWDDFA-VRPDVKHYTCMVD---LLGRAGRLDEALKLIESM---SVEKDEGLWGA---LLGA--CRIH 387 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~---~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~~--~~~~ 387 (577)
.++++|+..++..-+-+. -..+...--+++. .-+..+++.+|.++|++. .+..+..-|.. ++.+ |.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 445555555555532221 1122222223333 334678889999999887 22333333322 2222 3333
Q ss_pred -CCHHHHHHHHHHHHhcCCCCc
Q 037414 388 -KNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 388 -g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.|.-.+.+.+++-.+.+|.-.
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccc
Confidence 666677788888888888743
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.75 E-value=70 Score=32.64 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
....+++++.+.+..-.|+....-+.| +...|+++.+.+.+..... ....+-..+++...+.|++++|..+-.-|
T Consensus 306 ~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 306 IAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 455677777777665566655554443 5567999999998876644 35567788899999999999999999888
Q ss_pred HHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 037414 150 IRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS 187 (577)
Q Consensus 150 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 187 (577)
+...++ +..............+-++++...++++...
T Consensus 384 l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 384 LSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred hccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 877655 3333333333334456677777777776654
No 319
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.09 E-value=50 Score=30.58 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSR---VLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
|-+.|-.|....++..|...++.--+.+ -.-|..+...||.+|- .|+.++...
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~k 248 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKK 248 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHH
Confidence 3334444444555555555555532221 1122334555555542 344444443
No 320
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.08 E-value=1.3 Score=37.58 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
|..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555554444445555555555555554444444444
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=79.88 E-value=85 Score=33.05 Aligned_cols=302 Identities=12% Similarity=0.099 Sum_probs=187.8
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH-HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL-PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 200 (577)
+-..|+.+|..--.....+.+..++..++.. .|...-| .....-=.+.|..+.+.++|++-+.. ++.....|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 5567888887655555666777777777754 4555443 22333335778899999999988864 677777887776
Q ss_pred HHHH-hCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 037414 201 DMYA-KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFL-LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278 (577)
Q Consensus 201 ~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 278 (577)
.... ..|+.+..++.|+....- .|.. .....|...|..-..++++.....+++++.+-....++...
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~-----------vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f 189 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSY-----------VGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHF 189 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHh-----------cccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHH
Confidence 6554 457888888888876542 1222 24567777787778899999999999999986666666665
Q ss_pred HHHHH---c------CChHHHHHHHHHhhhC---C-CCCCHHHHHHHHHHHhc-cCCHHHH-------------------
Q 037414 279 AAYGY---H------GQGKKALDLFPMMLSS---R-VLPNRITFVSLLYACSH-TGLVEEG------------------- 325 (577)
Q Consensus 279 ~~~~~---~------g~~~~A~~l~~~m~~~---g-~~p~~~t~~~ll~a~~~-~g~~~~a------------------- 325 (577)
.-|.+ . ...+++.++-...... + ..+........+.--.. .+..+++
T Consensus 190 ~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~ 269 (577)
T KOG1258|consen 190 DRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSE 269 (577)
T ss_pred HHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhH
Confidence 55543 2 2345555554443321 0 00111111111111100 1111111
Q ss_pred -----HHHHHHhhHh--cCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHH
Q 037414 326 -----LRLFSSMWDD--FAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 326 -----~~~~~~m~~~--~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~ 392 (577)
+..|+.-+++ +.++| +..+|...++--.+.|+.+.+.-+|++. +...-...|-..+.-....|+.+.
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence 1112211111 01222 4577888888888899999999999887 333334466666666666688888
Q ss_pred HHHHHHHHHhcC-CCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 393 AEMAAKSLLERQ-PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 393 a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
|..+.....+.. |..+.+...-.......|++..|..+++...+.
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh
Confidence 888888777765 556666556666667788999999998888764
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.54 E-value=2.7 Score=23.55 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhccCChhHHHHHHH
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
.....+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777888888888877764
No 323
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.86 E-value=32 Score=30.20 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
+++|...|+++...+|.+. .|..-+.+.. +|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 5667777777788889874 6766666653 478888888877654
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.73 E-value=22 Score=31.86 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=51.6
Q ss_pred HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCCCHHHHHHHHHHHHHcCCHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA--VRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
+.|+ ++|.+.|-++...+.--++.....|...|. ..+.+++.+++...++-++ -.+|+..+.+|+..|.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3343 477777777777765555555555555444 5677888888777765332 24667778888888888888777
Q ss_pred HH
Q 037414 361 AL 362 (577)
Q Consensus 361 A~ 362 (577)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.34 E-value=33 Score=35.94 Aligned_cols=152 Identities=11% Similarity=-0.041 Sum_probs=100.4
Q ss_pred ccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHH
Q 037414 31 EPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTD 110 (577)
Q Consensus 31 ~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 110 (577)
.-.|+++.|-.++.... .+...-...+|...+ .+++.+.....||.. .....+.|+++.
T Consensus 597 vmrrd~~~a~~vLp~I~---------k~~rt~va~Fle~~g-------~~e~AL~~s~D~d~r-----Felal~lgrl~i 655 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP---------KEIRTKVAHFLESQG-------MKEQALELSTDPDQR-----FELALKLGRLDI 655 (794)
T ss_pred hhhccccccccccccCc---------hhhhhhHHhHhhhcc-------chHhhhhcCCChhhh-----hhhhhhcCcHHH
Confidence 44677777777655543 223333444444333 334444433333322 334457899999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 037414 111 AHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLD 190 (577)
Q Consensus 111 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 190 (577)
|.++..+. .+..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|.
T Consensus 656 A~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~- 723 (794)
T KOG0276|consen 656 AFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK- 723 (794)
T ss_pred HHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-
Confidence 99887654 3667799999999999999999999877654 56677778888887766666666666663
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
.+. -.-+|...|+++++.+++.+-.
T Consensus 724 ~N~-----AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 724 NNL-----AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred cch-----HHHHHHHcCCHHHHHHHHHhcC
Confidence 232 3345677899999999987653
No 326
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.22 E-value=3.8 Score=24.23 Aligned_cols=29 Identities=10% Similarity=0.237 Sum_probs=24.5
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..+..+..+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999987653
No 327
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.04 E-value=46 Score=28.99 Aligned_cols=120 Identities=16% Similarity=0.140 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
++...|..+|..+.+.|++... .++...++-||.......+-.+. +....+.++--.|.++.+ ..+..+
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~i 95 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEI 95 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHH
Confidence 5555666677777777665433 33444455555555444443322 222334444444443311 134556
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
++.+...|++-+|.++.+..+. -+...-..++.+....+|...-..+++-.
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~-~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHK-VDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-cccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6667777777777777766421 12222344555555555544444444333
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.75 E-value=4.1 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.++..|...|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887754
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.54 E-value=17 Score=32.49 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=58.8
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhCCCHH
Q 037414 134 SKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS---GLDIDQFVCAALVDMYAKCKVID 210 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~ 210 (577)
.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++-..++. +-.+|+.++.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 688999988888765545555555555454 68899999999888774 23678999999999999999999
Q ss_pred HHH
Q 037414 211 DAR 213 (577)
Q Consensus 211 ~A~ 213 (577)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 884
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.01 E-value=5.2 Score=24.95 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45566666666666666666666554
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.58 E-value=5.8 Score=22.15 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFD 264 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~ 264 (577)
...|...+...|+.++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456666777777777776664
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=75.32 E-value=6.8 Score=37.74 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=76.9
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhcCCH
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGACRIHKNV 390 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~ 390 (577)
.-|.+.|.+++|+..|...+ .+.| +..+|.--..+|.+..++..|+.-.... .+. .-...|..-..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999998776 4566 7778888888899999988887655443 211 1123555555555667889
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH
Q 037414 391 DLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
.+|.+-++.+++++|++.. |-..|.+.....++.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999999654 33444444444454433
No 333
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.27 E-value=78 Score=30.21 Aligned_cols=144 Identities=11% Similarity=0.020 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC-------CC-----------------------CC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM-------KE-----------------------RD 122 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m-------~~-----------------------~~ 122 (577)
...|+++|..++.+.-. ..+-+-++.++....+..+|...|... .. -|
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~D 226 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYD 226 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCcccc
Confidence 56899999999876322 233455677777777776666555432 11 14
Q ss_pred cchHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCCc-----------------chHHHHHHHHhcCCChHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKV-ADFINCFETFREFIRCGMQLDS-----------------YTLPFVIRACRDRKDIVMGRLIHDIV 184 (577)
Q Consensus 123 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-----------------~t~~~ll~~~~~~~~~~~a~~~~~~~ 184 (577)
+.-|-..++..-.- -..+++.++...... +.-|+. .++..+.+.|...|.+.+|.++++..
T Consensus 227 v~e~es~~rqi~~inltide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 227 VQEYESLARQIEAINLTIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44455555443332 234555555444322 122221 13444556788999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 185 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
++.. +.+...+-.|+..|...|+--.|.+-++++.
T Consensus 306 ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 306 LTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 9876 7788899999999999999777777776664
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.87 E-value=16 Score=30.25 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcC-CCC-chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 388 KNVDLAEMAAKSLLERQ-PQN-PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+..+++.+++.+.+.. |.. ......|.-++.+.|+++.+.++.+.+.+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34566777777777632 332 23344566677788888888888777764
No 335
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.69 E-value=1.4e+02 Score=32.45 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=39.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhC---
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQFVCAALVDMYAKC--- 206 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~--- 206 (577)
..+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345557889999988766 2234456666666666553322222211 2222211 011124567788888763
Q ss_pred CCHHHHHHHHhhCC
Q 037414 207 KVIDDARQLFDQMP 220 (577)
Q Consensus 207 g~~~~A~~~~~~m~ 220 (577)
.++.+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888876654
No 336
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.30 E-value=68 Score=28.64 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=32.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhh--HHHHHHHHHHcCChHHHHHHHHHhhhCC
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQKNVIS--WSAMIAAYGYHGQGKKALDLFPMMLSSR 301 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g 301 (577)
|.......|..|+|+.+++...+++-.. ...-.+.+...|+-++|..-|.+.+..+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455556666666666666665543322 2222345666666666666666666554
No 337
>PRK09687 putative lyase; Provisional
Probab=73.02 E-value=91 Score=29.95 Aligned_cols=84 Identities=8% Similarity=-0.061 Sum_probs=39.5
Q ss_pred cCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh----HHHHHHHHHHHHcCCCCc
Q 037414 117 GMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI----VMGRLIHDIVLKSGLDID 192 (577)
Q Consensus 117 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~ 192 (577)
.+..+|....-..+.++...|. .++...+..+... +|...-...+.+++..|+. +++...+..+... .++
T Consensus 31 ~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d 104 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKS 104 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCC
Confidence 3344555555555556655553 3444444444432 2333334445555555542 2344444443222 455
Q ss_pred HHHHHHHHHHHHhC
Q 037414 193 QFVCAALVDMYAKC 206 (577)
Q Consensus 193 ~~~~~~li~~~~~~ 206 (577)
..+....+.+++..
T Consensus 105 ~~VR~~A~~aLG~~ 118 (280)
T PRK09687 105 ACVRASAINATGHR 118 (280)
T ss_pred HHHHHHHHHHHhcc
Confidence 55555555555544
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=72.27 E-value=7.8 Score=21.65 Aligned_cols=28 Identities=25% Similarity=0.009 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 378 GALLGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 378 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
..+...+...++++.|...+++.++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3334444444455555555444444433
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.84 E-value=5 Score=23.48 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=24.7
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++..+..+|.+.|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999987643
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.69 E-value=21 Score=24.26 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=21.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 411 YVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+.-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45678899999999999999998875
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.68 E-value=54 Score=27.78 Aligned_cols=92 Identities=11% Similarity=0.164 Sum_probs=62.6
Q ss_pred HHHHHHcCCCCCH--HHHHHHHHHHHcCCChHHHHHHHhcCCC---------CCcchHHHHHHHHHhCCC-hhHHHHHHH
Q 037414 80 HAQIVAGGTLTNL--IVANKLLYIYALHKALTDAHALFNGMKE---------RDSVSWSVMVGGFSKVAD-FINCFETFR 147 (577)
Q Consensus 80 ~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~ 147 (577)
...|.+.+..++. ...|.++.-.+..+++.....+++.+.. .+..+|++++.+..+..- ---+..+|.
T Consensus 25 ~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 25 LPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 3445555655554 3467777777777788877777776632 255678888888766655 334577778
Q ss_pred HHHHCCCCCCcchHHHHHHHHhcC
Q 037414 148 EFIRCGMQLDSYTLPFVIRACRDR 171 (577)
Q Consensus 148 ~m~~~g~~p~~~t~~~ll~~~~~~ 171 (577)
.|.+.+.+++..-|..++.+|.+.
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcC
Confidence 887777777888888888877664
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.40 E-value=8.6 Score=22.73 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+|..+...|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688899999999999999999988764
No 343
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.85 E-value=1.3e+02 Score=31.00 Aligned_cols=98 Identities=9% Similarity=0.110 Sum_probs=59.8
Q ss_pred CCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHhC--CCCCCHh
Q 037414 302 VLPNRITFV-SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL---LGRAGRLDEALKLIESM--SVEKDEG 375 (577)
Q Consensus 302 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m--~~~p~~~ 375 (577)
..|+..|+. .++.-+-..|-..+|...+..+.. --+|+...|..+|+. ...+| +..+.+.++.| ..-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 355555543 456666667777778777777753 234556666666653 23333 66667777766 2225666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
.|...+.--..+|..+-+-.++.++.+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 677666666677777666666665554
No 344
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.57 E-value=16 Score=35.24 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=60.8
Q ss_pred HHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 356 (577)
..-|.+.|.+++|++.|..-.. +.| |.+++..-..||.+...+..|+.--...+.- . ..-+..|+.-..+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 4579999999999999998776 456 8899998899999998888777655544321 0 001223333333333345
Q ss_pred CHHHHHHHHHhC-CCCCCHh
Q 037414 357 RLDEALKLIESM-SVEKDEG 375 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p~~~ 375 (577)
...+|.+-++.. .++|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 566666655554 5677643
No 345
>PRK10941 hypothetical protein; Provisional
Probab=70.17 E-value=22 Score=33.76 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+.+-.++.+.++++.|.++.+.++...|+++.-+.--.-+|.+.|.+..|..-++...+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 455666778999999999999999999999998888888888999999999999888776543
No 346
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.87 E-value=82 Score=28.15 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=59.3
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHhCCCCCCHhH--HHHHHHHH
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC-----MVDLLGRAGRLDEALKLIESMSVEKDEGL--WGALLGAC 384 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~p~~~~--~~~ll~~~ 384 (577)
+...+...+++++|...++..+.. |....+.. |.......|.+|+|+++++... .++-.. ...-...+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHH
Confidence 345667778888888888776522 33333333 3346677889999999888763 222222 22222457
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
...|+-++|...|++.++.++.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 8889999999999998888744
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.83 E-value=75 Score=29.29 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=33.5
Q ss_pred HHHHHHHc-CCHHHHHHHHHhC-----CCCCCHhHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 348 MVDLLGRA-GRLDEALKLIESM-----SVEKDEGLWGALL---GACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 348 li~~~~~~-g~~~~A~~~~~~m-----~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+.+.|-.- .++++|+..|+.. +-+.+...-..++ ..-...+++.+|+.+|+++.....+++
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 33444332 4555555555554 1122232223333 334567889999999999877654443
No 348
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=68.74 E-value=94 Score=28.35 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH--HhcCCChHHHHHHHHHHHHc
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA--CRDRKDIVMGRLIHDIVLKS 187 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~ 187 (577)
+..||-|.-.+...|+++.|.+.|+...+.. |. .-|..+=++ +--.|++..|.+-+...-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 4568888888888999999999999888753 22 123323222 22347777776665555444
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.61 E-value=12 Score=25.39 Aligned_cols=30 Identities=23% Similarity=0.150 Sum_probs=24.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
+.-++.+.|+++.|.+..+.+++.+|++..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 456788999999999999999999999864
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.52 E-value=3.2e+02 Score=34.36 Aligned_cols=129 Identities=9% Similarity=0.051 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhc-CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cchHHHHHHHHhc
Q 037414 93 IVANKLLYIYALHKALTDAHALFNG-MKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-SYTLPFVIRACRD 170 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 170 (577)
..+-.+...|+.-+++|...-+... ...++ ...-|-.....|+++.|...|+.+.+. .|+ ..+++-++.....
T Consensus 1421 ~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~ 1495 (2382)
T KOG0890|consen 1421 ALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLA 1495 (2382)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhc
Confidence 3445555689888888887776653 33332 223444667789999999999999985 344 6778878877777
Q ss_pred CCChHHHHHHHHHHHHcCCCCcHHHH-HHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGLDIDQFVC-AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
.+.++...-..+-.... ..+....+ +.=+.+--+.+++|....... .++..+|.+.
T Consensus 1496 ~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1496 IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 77777766544443332 22333333 333444467777777666655 4444555443
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.45 E-value=20 Score=32.51 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHH
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSN 416 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 416 (577)
.+.-++.+.+.+++++|+...+.- .-+| |...-..++..++..|++++|..-++-+-++.|+.. ..|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344566778889999999887665 4456 555777788899999999999999988888888754 34444443
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.25 E-value=2e+02 Score=32.03 Aligned_cols=221 Identities=14% Similarity=0.008 Sum_probs=115.4
Q ss_pred HhCCCHHHHHHHHhhCC----CCChhHHHHHHhcCCCCcchhhHHHHH-HHHHhcCCHHHHHHHHHhccC--------CC
Q 037414 204 AKCKVIDDARQLFDQMP----TRDLVTWTVMIGANKFLLDVILGTAVI-DMYAKCGSIDSAREIFDRMRQ--------KN 270 (577)
Q Consensus 204 ~~~g~~~~A~~~~~~m~----~~~~~~~~~~i~~~g~~~~~~~~~~Li-~~~~~~g~~~~A~~~~~~~~~--------~~ 270 (577)
....++++|..++.+.. .++...- ..-...+++|- ......|+.+.|.++-+.... ..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~---------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQ---------GDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccch---------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 44678999988887653 2221100 00011222222 223457888888887766542 45
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH-----HHHhccCCHHH--HHHHHHHhhHhcCC-CC--
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL-----YACSHTGLVEE--GLRLFSSMWDDFAV-RP-- 340 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-----~a~~~~g~~~~--a~~~~~~m~~~~~~-~p-- 340 (577)
++.+..+..+..-.|++++|..+.++..+.--.-|...|.... ..+...|+... ....|......+.. +|
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~ 576 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH 576 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 6677788888888999999999888776543333433332221 22344563322 22223322221111 11
Q ss_pred --CHHHHHHHHHHHHHc-CCHHHHHHHHHhC-CCCCCH--h--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchh
Q 037414 341 --DVKHYTCMVDLLGRA-GRLDEALKLIESM-SVEKDE--G--LWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGH 410 (577)
Q Consensus 341 --~~~~~~~li~~~~~~-g~~~~A~~~~~~m-~~~p~~--~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~ 410 (577)
-.-.+..+..++.+. +...+|..-+.-. ...|.. . .+..|.......|+.+.|....+++.... +.-...
T Consensus 577 ~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 577 EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 123444445555541 1222222222222 112222 2 22356677888999999999999887653 221122
Q ss_pred HH-----HHHHHHhccCChhHHHHHHHH
Q 037414 411 YV-----LLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 411 ~~-----~l~~~~~~~g~~~~A~~~~~~ 433 (577)
|. .-......+|+.+++.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 22 222234577888888777655
No 353
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=68.21 E-value=34 Score=25.93 Aligned_cols=67 Identities=13% Similarity=0.099 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 037414 75 QIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143 (577)
Q Consensus 75 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 143 (577)
.+.++++.+.+.|+- +....+.+-.+-...|+.+.|+++++.++ +.+..|..+++++-..|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 466788888888843 33344444444346789999999999999 88889999999998888765554
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.07 E-value=1.9e+02 Score=31.54 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHH---cCChHHHHHHHHHhhhCCCCCCH-HHHHHHHH-HHhccCCHHHH-----------HHHHHHhhHh
Q 037414 272 ISWSAMIAAYGY---HGQGKKALDLFPMMLSSRVLPNR-ITFVSLLY-ACSHTGLVEEG-----------LRLFSSMWDD 335 (577)
Q Consensus 272 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~-a~~~~g~~~~a-----------~~~~~~m~~~ 335 (577)
.-+..||..|.+ ..++.+|+++|--+....- |+. ..+...+. .....++++.- ..++++-.+-
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~L 403 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSL 403 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccc
Confidence 557778888876 4578888888887765432 332 22222221 11222211110 0111110000
Q ss_pred cCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHhCCCCCCHh--HHHHHHHHHHhcCC------------HHHHHHHH
Q 037414 336 FAVRPDVKHYT----CMVDLLGRAGRLDEALKLIESMSVEKDEG--LWGALLGACRIHKN------------VDLAEMAA 397 (577)
Q Consensus 336 ~~~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~g~------------~~~a~~~~ 397 (577)
.++..+..... ....-+...|++++|..+|+-.+ +.|.+ ..+.+++-...... ...|..+.
T Consensus 404 i~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~ 482 (613)
T PF04097_consen 404 IKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEIL 482 (613)
T ss_dssp GT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHH
Confidence 12222222222 22344667899999999999886 33322 44555544333222 23344433
Q ss_pred HHHHhc-------CCCCchhHHHHHHH-----HhccCChhHHHHHHHHH
Q 037414 398 KSLLER-------QPQNPGHYVLLSNV-----YANAGRWQDVAKIRDLM 434 (577)
Q Consensus 398 ~~~~~~-------~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 434 (577)
+..... .+....++..|... +...|+|++|.+.++++
T Consensus 483 ~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 483 ERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 333221 12223455555544 56889999999887765
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.34 E-value=14 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHHHHHcCChHHHHHHHHHhhh
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.18 E-value=13 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSN 416 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 416 (577)
|+.+.+..+++++++..|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788888999998888887777766554
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.17 E-value=62 Score=25.35 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
.++|..|-+++...|-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 66777777777665522 222222334556678888899888888888888888777543 556666666666666665
Q ss_pred CCCCCcchH
Q 037414 153 GMQLDSYTL 161 (577)
Q Consensus 153 g~~p~~~t~ 161 (577)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3333333
No 358
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=65.69 E-value=23 Score=27.24 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..++...+.+|+|...-..+...+...|++++|.+.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44566677888888888888888889999999988888877654
No 359
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.30 E-value=91 Score=29.59 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=49.5
Q ss_pred HHHHHHcCChHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH-
Q 037414 278 IAAYGYHGQGKKALDLFPMMLSS--RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR- 354 (577)
Q Consensus 278 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 354 (577)
|.+++..+++.+++...-+--+. .++|...-. -|-.|++.+.+..+.++-..-++..+ .-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 66777777777766554333222 244443333 33346777777777776666654321 1223346666666554
Q ss_pred ----cCCHHHHHHHHHh
Q 037414 355 ----AGRLDEALKLIES 367 (577)
Q Consensus 355 ----~g~~~~A~~~~~~ 367 (577)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888887743
No 360
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.30 E-value=54 Score=26.86 Aligned_cols=70 Identities=13% Similarity=0.251 Sum_probs=51.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 289 KALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 289 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+..+-++.+....+.|+......-+.||.+.+++..|..+|+-... ...+....|..+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH---------HHHHHHHHh
Confidence 5666677777778899999999999999999999999999998854 34444455666553 344555565
Q ss_pred C
Q 037414 369 S 369 (577)
Q Consensus 369 ~ 369 (577)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 361
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.17 E-value=89 Score=28.52 Aligned_cols=57 Identities=11% Similarity=-0.067 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q 037414 162 PFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219 (577)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (577)
+.-++.+.+.+.++++.+...+-++.. +.|......|++.||-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455556677777777776666654 556666777777788888888776655443
No 362
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.64 E-value=88 Score=24.88 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
.++|..|.+++...+- ....+--.-+..+.+.|++++|+..=.....||..+|-+|-. .+.|-.+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 7888888888887763 333344444566778889998865555566678888877654 4667777777777777655
Q ss_pred C
Q 037414 153 G 153 (577)
Q Consensus 153 g 153 (577)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=59.61 E-value=21 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=13.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKS 187 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~ 187 (577)
+..+|...|+.+.|+.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666666555543
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.53 E-value=56 Score=26.80 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=36.9
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 367 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
.+.+-|++.+..+-+++|++.+|+..|.++++-+...-++....|-.+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 346778999999999999999999999999998876654443344443
No 365
>PRK12798 chemotaxis protein; Reviewed
Probab=58.38 E-value=2.1e+02 Score=28.93 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=116.2
Q ss_pred cCCHHHHHHHHHhccC----CChhhHHHHHHHHHH-cCChHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 253 CGSIDSAREIFDRMRQ----KNVISWSAMIAAYGY-HGQGKKALDLFPMMLSS--RVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
.|+.++|.+.+..+.. +....|-+|+.+-.. ..++.+|+++|++..-. |--........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 7999999999998864 445667777776554 56899999999987653 2111223344445566788999998
Q ss_pred HHHHHHhhHhcCCCCCHHHHH-HHHHHHHHc---CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 326 LRLFSSMWDDFAVRPDVKHYT-CMVDLLGRA---GRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
..+-....+++.-.|-...|. .++.++.+. -..+.-..++..|.-.--...|-.+.+.-...|+.+.|....++++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~ 284 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERAL 284 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 887777766665555443332 233333333 3455556666776422234588889999999999999999999998
Q ss_pred hcCCCCchhHHHHHHHHh-----ccCChhHHHHHHHHHh
Q 037414 402 ERQPQNPGHYVLLSNVYA-----NAGRWQDVAKIRDLMT 435 (577)
Q Consensus 402 ~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~ 435 (577)
.+...+ ..-...+..|. -..+++++.+.+..+-
T Consensus 285 ~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 285 KLADPD-SADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 875332 12222333332 2344666666665443
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=58.31 E-value=3.1e+02 Score=30.72 Aligned_cols=296 Identities=18% Similarity=0.140 Sum_probs=156.8
Q ss_pred hHHHHHHHHHHHCCCC-------CCcchHHHHHHHHhc----CCChHHHHHHHHH----HHHcCCCCcHHHHHHHHHHHH
Q 037414 140 INCFETFREFIRCGMQ-------LDSYTLPFVIRACRD----RKDIVMGRLIHDI----VLKSGLDIDQFVCAALVDMYA 204 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~-------p~~~t~~~ll~~~~~----~~~~~~a~~~~~~----~~~~g~~~~~~~~~~li~~~~ 204 (577)
+....+++++...|+. ++-+-|..++.-+.+ .+......++|.. ....|. |+. -|+-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~e-----AI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PSE-----AIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hHH-----HHHHHH
Confidence 3455667777777642 344556666654432 2222334444433 334453 332 344455
Q ss_pred hCCCHHHHHHHHhhCCC----C-ChhHHHHHHhcCCCCcchh-----hHHHHHHHHHhcCCHHHHHHHHHhcc----CCC
Q 037414 205 KCKVIDDARQLFDQMPT----R-DLVTWTVMIGANKFLLDVI-----LGTAVIDMYAKCGSIDSAREIFDRMR----QKN 270 (577)
Q Consensus 205 ~~g~~~~A~~~~~~m~~----~-~~~~~~~~i~~~g~~~~~~-----~~~~Li~~~~~~g~~~~A~~~~~~~~----~~~ 270 (577)
+.|+++.|..++++... . ....--.++ .+++++.. ..-.-+-...-..++++|..+..+.. .++
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~--~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~ 449 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWL--KALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM 449 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHH--HhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc
Confidence 78888888888877621 1 111111111 12222211 11111223345788999998888764 232
Q ss_pred h-------hhHHHHHH-HHHHcCChHHHHHHHHHhhhC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC
Q 037414 271 V-------ISWSAMIA-AYGYHGQGKKALDLFPMMLSS----RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 271 ~-------~~~~~li~-~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 338 (577)
. ..|+++-. .....|++++|.++-+..... -..+..+.+..+..+..-.|++++|..+.....+. .-
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~ 528 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-AR 528 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HH
Confidence 2 24665533 234578899999998877654 12234455566666777789999998887766432 22
Q ss_pred CCCHHHHHHHH-----HHHHHcCCHH--HHHHHHHhC-----CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 339 RPDVKHYTCMV-----DLLGRAGRLD--EALKLIESM-----SVEK----DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 339 ~p~~~~~~~li-----~~~~~~g~~~--~A~~~~~~m-----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
.-++..+...+ ..+...|+.. +.+..|... +.+| -..+...++.++.+ .+.+..-.....+
T Consensus 529 ~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~ 605 (894)
T COG2909 529 QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIE 605 (894)
T ss_pred HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcch
Confidence 23333333322 2345566332 223333322 1122 22344555555444 4444444443333
Q ss_pred c----CCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeE
Q 037414 403 R----QPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTW 447 (577)
Q Consensus 403 ~----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 447 (577)
. .|... ..+..|+.++...|+.++|...++++........+...|
T Consensus 606 ~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~ 657 (894)
T COG2909 606 VGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDY 657 (894)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchH
Confidence 2 23322 123478899999999999999999998765444344444
No 367
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.02 E-value=1.9e+02 Score=28.20 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=7.7
Q ss_pred chHhHHHhcc
Q 037414 510 SEKLAIAFGL 519 (577)
Q Consensus 510 ~~~la~~~~~ 519 (577)
.+.||.+||.
T Consensus 320 l~~MA~aFgV 329 (393)
T KOG0687|consen 320 LESMAKAFGV 329 (393)
T ss_pred HHHHHHHhCc
Confidence 4678888886
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.90 E-value=33 Score=25.49 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=21.1
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALK 363 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 363 (577)
+...-++|...|...+++..-.|+ -.+..+|+.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555443222222 1334455555555555555444
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.81 E-value=45 Score=29.88 Aligned_cols=35 Identities=11% Similarity=0.008 Sum_probs=17.0
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 371 EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 371 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
.|+..++..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.65 E-value=2.3e+02 Score=28.81 Aligned_cols=202 Identities=11% Similarity=0.038 Sum_probs=95.8
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHcCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 037414 78 QVHAQIVAGGTLTNLIV--ANKLLYIYALHKALTDAHALFNGMKERDSV--SWSVMVGGFSKVADFINCFETFREFIRCG 153 (577)
Q Consensus 78 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g 153 (577)
++...+++.|..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..++ +.|
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL----DLG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH----HcC
Confidence 34455666676665432 334455556777877666666543333211 1122344556677765544443 333
Q ss_pred CCCC----cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhCCCHHHHHHHHhhCCCCChhHH
Q 037414 154 MQLD----SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227 (577)
Q Consensus 154 ~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 227 (577)
...+ ..-.+. +...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.-...+..
T Consensus 92 ~~~~~~~~~~g~tp-L~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~-- 164 (413)
T PHA02875 92 KFADDVFYKDGMTP-LHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE-- 164 (413)
T ss_pred CcccccccCCCCCH-HHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCC--
Confidence 2211 111222 33333445553 4445556665554321 123445556677777766666543322111
Q ss_pred HHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhh---HHHHHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVIS---WSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 228 ~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
|..-. ..+...+..|+.+-+..+++.-..++... ..+.+...+..|+.+ +.+.+.+.|..+
T Consensus 165 -----------d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 165 -----------DCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred -----------CCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 11111 12334455677776666666544433221 223444344556553 344445566666
Q ss_pred CH
Q 037414 305 NR 306 (577)
Q Consensus 305 ~~ 306 (577)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 54
No 371
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.58 E-value=15 Score=30.30 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=23.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 037414 136 VADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 168 (577)
.|.-..|-.+|++|++.|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 45566788888888888888876 66676654
No 372
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.77 E-value=85 Score=25.88 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcC--CCCchhHHHHHHHHhccCChhHHHHHHHH
Q 037414 392 LAEMAAKSLLERQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDL 433 (577)
Q Consensus 392 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (577)
.+..+|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7888999887764 56677899999999999999999999864
No 373
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.47 E-value=2.2e+02 Score=28.84 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=35.9
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhhH
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRI--TFVSLLYACS--HTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 334 (577)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-+.++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344778889999999988876 555554 3444444443 34567788888887754
No 374
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=55.38 E-value=1.8e+02 Score=30.58 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC--ChhhH---HHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQK--NVISW---SAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
..|+.-|.+.+++++|..++..|.-. ....| +.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45788899999999999999998632 22233 3334444444434444445554443
No 375
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.84 E-value=1.7e+02 Score=28.14 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCC------CHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CC----Cchh
Q 037414 346 TCMVDLLGRAGRLDEALKLIESMSVEK------DEG--LWGALLGACRIHKNVDLAEMAAKSLLERQ---PQ----NPGH 410 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m~~~p------~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~----~~~~ 410 (577)
.-|...+-.+|+.+.|.+++-..+++. ... .----+..|...+|+-.|-...+++.+.. |+ ....
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlky 214 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKY 214 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 456677888999999999998775432 111 11112466888999999999999888764 22 1246
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEE
Q 037414 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFS 458 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~ 458 (577)
|..++..-.....+-++.++++..-...........|..+.+.+-.|.
T Consensus 215 YeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~ 262 (439)
T COG5071 215 YELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFA 262 (439)
T ss_pred HHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeE
Confidence 778888777778888888777776554433333457877776554443
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.68 E-value=1.9e+02 Score=28.11 Aligned_cols=53 Identities=8% Similarity=0.214 Sum_probs=28.8
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
+-.+.|++.+|.+.|+.+.++..+..-......|+.++....-+.+...++-+
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456777778777777765533222223334556666555555555544433
No 377
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.48 E-value=31 Score=37.81 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=23.0
Q ss_pred HcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 354 RAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
.+|+++.|++.-.++. |..+|..|.......|+.+.|+..+++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4555555555544443 4445555555555555555555555543
No 378
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.43 E-value=3.9e+02 Score=30.74 Aligned_cols=127 Identities=14% Similarity=0.025 Sum_probs=55.1
Q ss_pred cCCChhhHHHHHHHHHHcCChHH-HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH
Q 037414 267 RQKNVISWSAMIAAYGYHGQGKK-ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345 (577)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 345 (577)
.+++...-...+.++...+..+. +...+..+.. .+|...-...+.++...|..+.+...+..++++ ++..+-
T Consensus 752 ~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR 824 (897)
T PRK13800 752 TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVR 824 (897)
T ss_pred cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHH
Confidence 34444444444555555544322 2333434432 234444555555666555544333333333321 344444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
...+.++.+.+.- ++...+..+-..|+..+-...+.++...+....+...+..++
T Consensus 825 ~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 825 QGAARALAGAAAD-VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHHHHhcccc-chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4455555555542 233333333224455544445555544322233444444433
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.29 E-value=34 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.122 Sum_probs=30.0
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCch---hHHHHHHHHhccCChhHHHHH
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPG---HYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 430 (577)
...+.+.|+..++++++..++.+. ++-.|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776655443 344566777777877777665
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.28 E-value=1.1e+02 Score=24.36 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=16.6
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA 212 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 212 (577)
..++|..|.+.+...+- ....+--+-+..+.+.|++++|
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A 59 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA 59 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555555554432 2223333333444445555555
No 381
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.23 E-value=3.2e+02 Score=29.71 Aligned_cols=339 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHhccC-hHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHcCCChHHHHHHHhcCCC--------CCcchHHH
Q 037414 63 FISSLLSCRN-IFQIRQVHAQIVAGGTLTNLI-----VANKLLYIYALHKALTDAHALFNGMKE--------RDSVSWSV 128 (577)
Q Consensus 63 ~~~ll~a~~~-~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~~--------~~~~~~~~ 128 (577)
+..+|--.+. ++.|+..++..+...-.++.. ....++..|.+.+... |.+..++..+ .-...+.-
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Q ss_pred H-HHHHHhCCChhHHHHHHHHHHHCC---CCCCcchHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCC---------cH
Q 037414 129 M-VGGFSKVADFINCFETFREFIRCG---MQLDSYTLPFVIRA--CRDRKDIVMGRLIHDIVLKSGLDI---------DQ 193 (577)
Q Consensus 129 l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~---------~~ 193 (577)
+ +..+...+++..|++.++.....- ..|-...+..++.+ ....+..+.+.+..+.+......+ ..
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Q ss_pred HHHHHHHHHHH--hCCCHHHHHHHHhhCCC-----CChhHHHH----------------------HHhcCCCCcchhhHH
Q 037414 194 FVCAALVDMYA--KCKVIDDARQLFDQMPT-----RDLVTWTV----------------------MIGANKFLLDVILGT 244 (577)
Q Consensus 194 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~-----~~~~~~~~----------------------~i~~~g~~~~~~~~~ 244 (577)
.++..+++.++ ..|+++.+...++++.+ .+...|.. ++-..--..+..+..
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~ 303 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALV 303 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHH
Q ss_pred HHHHHHHhcCCH---------HHHHHHHHhcc-------------CCChhhHHHHHHHHHH---------cCChHHHHHH
Q 037414 245 AVIDMYAKCGSI---------DSAREIFDRMR-------------QKNVISWSAMIAAYGY---------HGQGKKALDL 293 (577)
Q Consensus 245 ~Li~~~~~~g~~---------~~A~~~~~~~~-------------~~~~~~~~~li~~~~~---------~g~~~~A~~l 293 (577)
-++.+...+.+- ++|.+..++.. -.+...|...+..+.. .+++..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Q ss_pred HHHhhhC-CCCCC-------HHHHHHHHHHHhccCCHHHHHHHHH-------HhhHhcCCCCCHHHHHH--HHHHHHHcC
Q 037414 294 FPMMLSS-RVLPN-------RITFVSLLYACSHTGLVEEGLRLFS-------SMWDDFAVRPDVKHYTC--MVDLLGRAG 356 (577)
Q Consensus 294 ~~~m~~~-g~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~-------~m~~~~~~~p~~~~~~~--li~~~~~~g 356 (577)
+.+|... ...|+ ...+....-.+-..|+++.|...|. ......+...+...+.. ++-.+...+
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~ 463 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES 463 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Q ss_pred CHHH----HHHHHHhC------CCCCCHhHHHHHHHHHHhcCCHH---HHHHHHHHHHh
Q 037414 357 RLDE----ALKLIESM------SVEKDEGLWGALLGACRIHKNVD---LAEMAAKSLLE 402 (577)
Q Consensus 357 ~~~~----A~~~~~~m------~~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~ 402 (577)
.-.+ +.++++.+ ....+..+|..++..-......- ++...+...++
T Consensus 464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~ 522 (608)
T PF10345_consen 464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK 522 (608)
T ss_pred ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
No 382
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.44 E-value=1.7e+02 Score=26.36 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=52.0
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhcCC
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGACRIHKN 389 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~ 389 (577)
...|++++|..-|...+.. +++. ...|.--.-++.+.+.++.|.+-..+. .+.|.- .....-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456666666666655532 2221 122333334556667777776655443 333421 122222345777788
Q ss_pred HHHHHHHHHHHHhcCCCCchhH
Q 037414 390 VDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
++.|+.-++++++.+|....+-
T Consensus 184 ~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHH
Confidence 8999999999999888765433
No 383
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=52.15 E-value=1.8e+02 Score=26.06 Aligned_cols=98 Identities=11% Similarity=0.163 Sum_probs=61.9
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC-
Q 037414 260 REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV- 338 (577)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~- 338 (577)
..+.++-+++..+.|.....+-++.-+.+++.+.|-- .+=.+++-.|-+.-++.+++++++.|.+- .+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el-~i~ 164 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHEL-QIH 164 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh
Confidence 3344444455666777777777776666665444311 12234666777888888888888877431 21
Q ss_pred -------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 339 -------------RPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 339 -------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+.-...|.....+.+.|.+|.|..++++-
T Consensus 165 ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 165 FTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233355666777788888888888888765
No 384
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.95 E-value=3.3e+02 Score=29.19 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHCCCCCCcchH-HHHHHH-HhcCCChHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHhCC--
Q 037414 139 FINCFETFREFIRCGMQLDSYTL-PFVIRA-CRDRKDIVMGRLIHDIVLK-------SGLDIDQFVCAALVDMYAKCK-- 207 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~-~~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~~~~~g-- 207 (577)
...|.++++.....|..-..... .....+ .....+++.|...+..+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45678888777776522111111 111222 4466788888888888766 44 2334556666676643
Q ss_pred ---CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc---CCHHHHHHHHHhccCC-ChhhHHHHHHH
Q 037414 208 ---VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC---GSIDSAREIFDRMRQK-NVISWSAMIAA 280 (577)
Q Consensus 208 ---~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~ 280 (577)
+.+.|..+|.+..+.+. |+ ..-.|..+|... .+...|.++|....+. .+.++-.+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-------------~~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-------------PD--AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC 369 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-------------ch--HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 55667777766543221 11 112233333322 3567777777776542 22222222222
Q ss_pred HH----HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 281 YG----YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 281 ~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
|. ...+...|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 21 2235677777777777776 3332222233333433 5555555444444
No 385
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.59 E-value=2.2e+02 Score=26.95 Aligned_cols=183 Identities=10% Similarity=0.082 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHhhCCCC--ChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhhH
Q 037414 206 CKVIDDARQLFDQMPTR--DLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---------KNVISW 274 (577)
Q Consensus 206 ~g~~~~A~~~~~~m~~~--~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 274 (577)
...+++|..-|++..+- ...-| .-.....+|..+.+.|++++....|.++.. -...+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeW-----------GFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEW-----------GFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchh-----------HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34677787777776432 11122 222345568889999999999999988863 233456
Q ss_pred HHHHHHHHHcCChHHHHHHHHH-------hhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC--------
Q 037414 275 SAMIAAYGYHGQGKKALDLFPM-------MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR-------- 339 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~-------m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-------- 339 (577)
|+++..-....+.+--.++++. .....+- -.|-.-|-..|...+.+.+..+++.++.+...-.
T Consensus 109 N~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW--FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kK 186 (440)
T KOG1464|consen 109 NSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW--FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKK 186 (440)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee--eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhc
Confidence 6766655555554444443332 2211111 1122345556666677777777776664321110
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHH-----HhcCCHHHHHHHHHHHHh
Q 037414 340 --PDVKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDEGLWGALLGAC-----RIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 340 --p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~ 402 (577)
.-.+.|..=|++|....+-..-..++++. ..-|.+.... +|+-| .+.|.+++|-.-|-++.+
T Consensus 187 GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 187 GTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred cchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 11467888888888887766666677655 2234444333 33333 456777777655555544
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.50 E-value=68 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.456 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777665
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.44 E-value=63 Score=28.89 Aligned_cols=51 Identities=18% Similarity=0.010 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
...+.+......+.+.+.....|+..+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555554444444443355677777777777777777777777777776
No 388
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=51.28 E-value=2.3e+02 Score=27.17 Aligned_cols=112 Identities=11% Similarity=0.139 Sum_probs=80.4
Q ss_pred ChHHHHHHHhcCCC-----CCcchHHHHHHHHHhCCC--hhHHHHHHHHHHH-CCCCCCcchHHHHHHHHhcCCChHHHH
Q 037414 107 ALTDAHALFNGMKE-----RDSVSWSVMVGGFSKVAD--FINCFETFREFIR-CGMQLDSYTLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 107 ~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~ 178 (577)
.+.+|+++|+.... .|...-..+++......+ ...--++.+-+.. .|-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35678888884322 255555666666655222 2222333333332 346778888999999999999999999
Q ss_pred HHHHHHHHc-CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 179 LIHDIVLKS-GLDIDQFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 179 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
+++...... +...|...|...|+.-.+.|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999877665 5677899999999999999999998888765
No 389
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.04 E-value=1.4e+02 Score=33.25 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=103.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH
Q 037414 197 AALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA 276 (577)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 276 (577)
.+.|.-+.+.|-.+-|+...+.=..+ .+....+|+++.|++.-.++-+ ..+|..
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tR------------------------F~LaLe~gnle~ale~akkldd--~d~w~r 677 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTR------------------------FELALECGNLEVALEAAKKLDD--KDVWER 677 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchh------------------------eeeehhcCCHHHHHHHHHhcCc--HHHHHH
Confidence 34555566677776666554332211 2345678999999888777654 457999
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 356 (577)
|+..-...|+.+-|+..|++... |..|--.|.-.|+.++-.++...... .-|... ....-.-.|
T Consensus 678 Lge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r~D~~~---~~qnalYl~ 741 (1202)
T KOG0292|consen 678 LGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----RNDATG---QFQNALYLG 741 (1202)
T ss_pred HHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----hhhhHH---HHHHHHHhc
Confidence 99999999999999999988654 33343456667888887776665532 222211 111112368
Q ss_pred CHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 357 RLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 357 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
+.++=.++++..+..|-. |- ....+|.-++|.++.++.-+.
T Consensus 742 dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 742 DVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred cHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhccc
Confidence 899999999988744422 21 124578888999998888663
No 390
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.69 E-value=1.2e+02 Score=28.25 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=61.6
Q ss_pred HHHcCCHHHHHHHHHhC---------CCCCCHhHH-----------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 352 LGRAGRLDEALKLIESM---------SVEKDEGLW-----------GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m---------~~~p~~~~~-----------~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
+.+.|++.+|..-|++. .-+|...-| ...-.++...|++-++++.-.+++...|.+..+|
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~ 267 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAY 267 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45666666666555443 224433333 2233456678999999999999999999999999
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 412 VLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..-..+.+..=+..+|..-|....+.
T Consensus 268 frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 268 FRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 98888888887888888888777653
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=50.43 E-value=4.5e+02 Score=30.26 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=141.2
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRAC 168 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 168 (577)
.+|+.+--.-+..+.+.+..+....+...+..+|...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 6677777777777777776554444555555555555445555554443222222333333332 4555555555665
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 169 RDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
...+.-+ ...+.. .++ .+|..+-...+.++.+.+..+... .... .++..+-...+.
T Consensus 709 ~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~l~---~~l~----------------D~~~~VR~~aa~ 764 (897)
T PRK13800 709 RALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVESVA---GAAT----------------DENREVRIAVAK 764 (897)
T ss_pred HhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHHHH---HHhc----------------CCCHHHHHHHHH
Confidence 5443211 112222 222 566677777777777665543221 1111 234556666677
Q ss_pred HHHhcCCHHH-HHH-HHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 249 MYAKCGSIDS-ARE-IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 249 ~~~~~g~~~~-A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
++...+..+. +.. +..-+.++|...-.+.+.++.+.|....+...+..+.. .+|...-...+.++...+. +++.
T Consensus 765 aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 765 GLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchH
Confidence 7777665443 233 33444568888888888999999987666555555554 3465566667778877765 4555
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEG 375 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 375 (577)
..+..+++ .|+..+-...+.++++.+.-..+...+...-..+|..
T Consensus 841 ~~L~~~L~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~ 885 (897)
T PRK13800 841 PALVEALT----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDAD 885 (897)
T ss_pred HHHHHHhc----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHH
Confidence 66666654 4677777777777777533344555554442244444
No 392
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.27 E-value=1.4e+02 Score=25.33 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---------CChhhHHHHHHHHHHcCC-hHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQ---------KNVISWSAMIAAYGYHGQ-GKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
|.++.-....++......+++.+.. .+..+|.+++.+..+..- ---+..+|..|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444455555555555554421 233344444444433332 223344444444444444444444444
Q ss_pred HHHh
Q 037414 314 YACS 317 (577)
Q Consensus 314 ~a~~ 317 (577)
.+|.
T Consensus 123 ~~~l 126 (145)
T PF13762_consen 123 KAAL 126 (145)
T ss_pred HHHH
Confidence 4443
No 393
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=48.18 E-value=90 Score=26.37 Aligned_cols=63 Identities=16% Similarity=0.075 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 358 LDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 358 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
-+.|.++.+-|+ .....-.........|++.-|.++.+.++..+|++...-....++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 466777888875 233334445556789999999999999999999998888888777766543
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=47.57 E-value=1.5e+02 Score=28.24 Aligned_cols=87 Identities=8% Similarity=0.078 Sum_probs=54.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH--CCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 037414 128 VMVGGFSKVADFINCFETFREFIR--CGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205 (577)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 205 (577)
.=|.+++..+++.+++...-+--+ ..++|...-. -|-.|.+.+....+.++-..-++..-.-+..-|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 347788888888888765433322 1244443333 334477888888877776655553222334457777776655
Q ss_pred -----CCCHHHHHHHH
Q 037414 206 -----CKVIDDARQLF 216 (577)
Q Consensus 206 -----~g~~~~A~~~~ 216 (577)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 59999999887
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=46.80 E-value=1.3e+02 Score=24.01 Aligned_cols=27 Identities=7% Similarity=0.166 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037414 125 SWSVMVGGFSKVADFINCFETFREFIR 151 (577)
Q Consensus 125 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 151 (577)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888887776
No 396
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.21 E-value=1.2e+02 Score=32.59 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=24.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhccCCH
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSS--RVLPNRITFVSLLYACSHTGLV 322 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~ 322 (577)
++..+|..+|++..+.++++..... |-+.-...|+..|....+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 4556666666666666665555433 2222233455555555555543
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.14 E-value=37 Score=32.53 Aligned_cols=41 Identities=24% Similarity=0.202 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
-|+..|..-.+.||+++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788999999999999999999999988776666665443
No 398
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.71 E-value=62 Score=24.46 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 037414 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142 (577)
Q Consensus 76 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 142 (577)
...++..+.+.|+-.. ...-..-+...+.+.|.++++.++.+...+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3457777887774322 22223334556788889999988888888888888888877765444
No 399
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.64 E-value=14 Score=35.74 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=52.9
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcCCHHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 395 (577)
..|.++.|.+.|...++. -.+....|.--..++.+.++...|++=++.. .+.||.. .|-.=-.+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 346666666666665431 1222334444444555555555555544443 3344433 22222333444566666666
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 396 AAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 396 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.+..+.+++-+. .+-..|-...-..+..++-...+++-
T Consensus 204 dl~~a~kld~dE-~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDYDE-ANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccccH-HHHHHHHHhccchhhhhhchhHHHHH
Confidence 666666554331 12223333444444444444444433
No 400
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.03 E-value=4.2e+02 Score=28.40 Aligned_cols=179 Identities=13% Similarity=0.084 Sum_probs=108.4
Q ss_pred HHHHHHHHHhccC-CChhhHHHHHHH-----HHHcCChHHHHHHHHHhhh-------CCCCCCHHHHHHHHHHHhccC--
Q 037414 256 IDSAREIFDRMRQ-KNVISWSAMIAA-----YGYHGQGKKALDLFPMMLS-------SRVLPNRITFVSLLYACSHTG-- 320 (577)
Q Consensus 256 ~~~A~~~~~~~~~-~~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-- 320 (577)
...|.++++...+ .++..-..+... +....+.+.|+.+|+.+.+ .|.. .....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCC
Confidence 5677778877765 344433333332 4456789999999999877 5522 23445556665533
Q ss_pred ---CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhCCCCCCHh--HHHHHHHHH--HhcCCHHH
Q 037414 321 ---LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR-AGRLDEALKLIESMSVEKDEG--LWGALLGAC--RIHKNVDL 392 (577)
Q Consensus 321 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~--~~~~ll~~~--~~~g~~~~ 392 (577)
+.+.|..++....+ .|. |+....-..+...+. ..+...|.++|......-... .+-++.... ....+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~-~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAE-LGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHh-cCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 66779999988853 343 554443333333333 245789999998883222333 332222221 23457899
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
|..++.++-+.++.....-......+.. ++++.+.-.+..+.+.|..
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 9999999999984432222233333444 8888888888888877754
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.00 E-value=22 Score=29.45 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=25.1
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
-..|.-..|..+|++|++.|-+||. ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999999985 66676654
No 402
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.97 E-value=72 Score=29.52 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=44.0
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHH-HHHhcCCHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHY-TCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLG-ACRIHKNVDL 392 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-~~~~~g~~~~ 392 (577)
|.....++.|..-+.+.+ .+.|+..+| +--+-.+.+..+++.+..--.+. .+.||.+--..++. +......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455666666555544 455665333 33444455566666655433332 45566553333333 3455566677
Q ss_pred HHHHHHHHHh
Q 037414 393 AEMAAKSLLE 402 (577)
Q Consensus 393 a~~~~~~~~~ 402 (577)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7776666643
No 403
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=44.14 E-value=92 Score=31.71 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=57.4
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc---CC
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA---GR 357 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~ 357 (577)
+...|++.+|+..|+.++.. ..+.......+.+++.+++.... +| +....+..-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icr-EY-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICR-EY-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhccccc
Confidence 35678999999999887632 22222333334455555544432 11 111122222211 11
Q ss_pred HHHHH------HHHHhCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 358 LDEAL------KLIESMSVEKDEG--LWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 358 ~~~A~------~~~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
.++.. .+|....++|... ++.+-++.+.+++++..|..+.+++++++|+.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 22222 2333335666433 67777788899999999999999999998865
No 404
>PRK10941 hypothetical protein; Provisional
Probab=43.64 E-value=1.3e+02 Score=28.72 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+.+-.+|.+.++++.|.++.+.+ .+.|+ ..-+.--.-.|.+.|.+..|..-++..++..|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556788899999999999888 45564 3456656666889999999999999999998888754
No 405
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=43.58 E-value=38 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC----hhHHHHHHHHH
Q 037414 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR----WQDVAKIRDLM 434 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 434 (577)
+++|+.-|++++.++|+...++..+.++|...+. ..+|...|++-
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777888888999999999999999886553 33444444443
No 406
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.45 E-value=5.4e+02 Score=29.21 Aligned_cols=111 Identities=10% Similarity=0.062 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCC--c-----chHHHHHHHHHhCCCh--hHHHHHHHHHHHCCCCCCcchHHH--
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERD--S-----VSWSVMVGGFSKVADF--INCFETFREFIRCGMQLDSYTLPF-- 163 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~--~-----~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~-- 163 (577)
|..|+..|...|..++|+++|......+ . ..+--++..+.+.+.. +-+++.-++..+....-....++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5667777777777777777777665422 1 1123344444444443 444444444433221111111111
Q ss_pred ----------HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 037414 164 ----------VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205 (577)
Q Consensus 164 ----------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 205 (577)
.+-.+......+.+...++.++...-.++....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111233444555566667766665545566777777777764
No 407
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=43.21 E-value=1.9e+02 Score=23.85 Aligned_cols=89 Identities=10% Similarity=0.182 Sum_probs=56.3
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHhc----CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-CChhhHH-HHHHHHH
Q 037414 209 IDDARQLFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-KNVISWS-AMIAAYG 282 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~~~~~~~i~~----~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~-~li~~~~ 282 (577)
+.++.++|.++..++.....-++.+ .|-+--..+..++..++.-+|..++|.++++...- ++-...| -++..|.
T Consensus 31 W~~l~~~f~k~~~~~~R~LP~LvAaNPVNYGkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~ 110 (127)
T PF04034_consen 31 WNRLDEVFKKLRSRNHRLLPYLVAANPVNYGKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYA 110 (127)
T ss_pred HHHHHHHHHhcCCCCCccCchhhccCCcccCCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5555555777765443333333333 34444556677888888889999999998888764 3333333 4678888
Q ss_pred HcCChHHHHHHHHHh
Q 037414 283 YHGQGKKALDLFPMM 297 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m 297 (577)
+..+.++..++-++.
T Consensus 111 ~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 111 KCKTSEEVIEIQNEY 125 (127)
T ss_pred cCCCHHHHHHHHHHH
Confidence 887777766655443
No 408
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.15 E-value=89 Score=20.60 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=19.0
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
.+.|-.+++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666666655555544
No 409
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.81 E-value=3e+02 Score=26.06 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH-HHHHHHh
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV-LLSNVYA 419 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~ 419 (577)
+......+...|.+.|++.+|+.-|-.-. .|+...+..++......| .|.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHHH
Confidence 45667778888899999999887776543 233333222332222222 233333333 3444577
Q ss_pred ccCChhHHHHHHHHHhhC
Q 037414 420 NAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (577)
..|+...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 788999999998887765
No 410
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.25 E-value=38 Score=23.82 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=11.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhh
Q 037414 276 AMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
.+|.+|.+.|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555443
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.75 E-value=85 Score=24.15 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcC----CCC-----chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 384 CRIHKNVDLAEMAAKSLLERQ----PQN-----PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..+.||+..|.+.+.+..... ... ..+...+...+...|++++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356677777766666655432 111 12334566777888999999998887764
No 412
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=41.31 E-value=72 Score=34.54 Aligned_cols=165 Identities=14% Similarity=0.242 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC-CCh----------hhHHHHHHHHHHcCChHHHHHHHHHhhhC--CCCCCH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ-KNV----------ISWSAMIAAYGYHGQGKKALDLFPMMLSS--RVLPNR 306 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~ 306 (577)
..+...++-.|....+++...++.+.++. ||. +.|.-.++---+-|+-++|++..-.|++. .+.||.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 44555677788899999999999888875 432 12333333334567888899888777764 367776
Q ss_pred HH-----HHH--HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH------HhC-CCC
Q 037414 307 IT-----FVS--LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR-LDEALKLI------ESM-SVE 371 (577)
Q Consensus 307 ~t-----~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~------~~m-~~~ 371 (577)
.. |.- +-+.|...+..+.|.+.|++.. .+.|+...--.+...+...|+ ++...++- ..+ +.+
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 43 221 2234556677888888888774 567765443333333333332 22222211 111 211
Q ss_pred CCH---h-HH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 372 KDE---G-LW--GALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 372 p~~---~-~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
-.. . .| ...+.+-.-.+|+.+|.+..+.|.++.|+.
T Consensus 358 G~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 358 GALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred chHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 111 1 11 223455566789999999999999999874
No 413
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.31 E-value=1.6e+02 Score=26.99 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCH-------HHHHHHHHHHHhcC--CCC----chhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 377 WGALLGACRIHKNV-------DLAEMAAKSLLERQ--PQN----PGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 377 ~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+--+.-.|+..|+. ..|.+.|++..+.+ |.. ......++.++.+.|++++|.+.|..+...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33334445666663 34555555555443 222 3456678888999999999999999887654
No 414
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.03 E-value=1.1e+02 Score=23.32 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHH
Q 037414 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 291 (577)
..|+.+.|.+++..+. +....|...++++...|+..-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 3466666666666666 55666666666666666554443
No 415
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=40.30 E-value=6.1e+02 Score=28.88 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG 356 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 356 (577)
.|++-.|.+++.+++++.|-.++...|-.+++.+...|
T Consensus 1244 ~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1244 LGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 34444555555544444444444444444444444444
No 416
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.81 E-value=2.8e+02 Score=24.85 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHcCC--------------CCcHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q 037414 162 PFVIRACRDRKDIVMGRLIHDIVLKSGL--------------DIDQFVCAALVDMYAKCKVIDDARQLFDQM 219 (577)
Q Consensus 162 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (577)
.+++-.|-+..++.+++++++.|-+..+ .+.-.+-|.....+.+.|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 4566678888889999999888776422 334467788899999999999999999853
No 417
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.89 E-value=3.5e+02 Score=25.66 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC------------CC---hhhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQ------------KN---VISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI 307 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~------------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ 307 (577)
+.|...|...|.+.+-.+++.++.+ +. ...|..=|..|....+-.+-..++++...-. --|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3467777778888877777777642 11 2356667888888888777778888765432 334444
Q ss_pred HHHHHHHHHh-----ccCCHHHHHHHHHHhhHhcCCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHhC---C--CCC
Q 037414 308 TFVSLLYACS-----HTGLVEEGLRLFSSMWDDFAVR--PD---VKHYTCMVDLLGRAGRLDEALKLIESM---S--VEK 372 (577)
Q Consensus 308 t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p 372 (577)
.. .+|.-|. +.|.+++|..-|-+..+.+.-. |. .--|-.|..++.+.|- .-|+.- | ..|
T Consensus 229 Im-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDP 302 (440)
T ss_pred HH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCH
Confidence 33 4566553 4577887765544444543221 22 2335555666766651 112111 2 235
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
.......|+.+|..+ ++.+-++++.
T Consensus 303 EIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 556778888887654 4444444433
No 418
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.46 E-value=3.9e+02 Score=26.15 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHH-HHh----cCCHHHHHHHHHhcc
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM-YAK----CGSIDSAREIFDRMR 267 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~-~~~----~g~~~~A~~~~~~~~ 267 (577)
....-....-||+-|+-+.|.+.+++..++++. .|...|+..+.+=+.. |.. ...++.|..++++--
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs--------~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg 175 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVS--------LGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG 175 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh--------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 345556677899999999999999887766554 3666676665543332 222 234556666666554
Q ss_pred C---CC-hhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 268 Q---KN-VISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 268 ~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
+ +| ..+|-.+-. ....++.+|-.+|-+...
T Consensus 176 DWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 176 DWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSVS 209 (393)
T ss_pred ChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHcc
Confidence 3 22 234443322 234567788887776654
No 419
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.36 E-value=3.3e+02 Score=25.31 Aligned_cols=134 Identities=15% Similarity=0.158 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEG 325 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 325 (577)
-+..|++.-++.-|-..++++.+|= .+- +.|--|.+..+.+---++.+-....++.-+..-..+++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPI-QSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPI-QSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhH-Hhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 4666777777776666666665541 111 22233444444333334444444445555554444444 3456788887
Q ss_pred HHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 326 LRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 326 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
...++.-...+|.. .+..+|+-.. +|.+.....++..|.. +++++|.+++.++-+++-
T Consensus 212 lNnLQst~~g~g~V--------------------n~enVfKv~d-~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLV--------------------NQENVFKVCD-EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhcccccc--------------------chhhhhhccC-CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC
Confidence 77777665433321 1223333333 5666666666666553 467777777777776653
No 420
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.09 E-value=1.1e+02 Score=20.21 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=18.4
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037414 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200 (577)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 200 (577)
+.|-++++...++.|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455556666666666666665555555544
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=37.71 E-value=25 Score=35.81 Aligned_cols=96 Identities=10% Similarity=0.045 Sum_probs=64.7
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhcC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC-MVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIHK 388 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g 388 (577)
-+......+.++.|..++.+++ .+.|+...|-+ -..++.+.+++..|..=+... ...|.-. .|--=..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3445556778899999998887 46776544433 236777888888777655444 4445432 3333345566777
Q ss_pred CHHHHHHHHHHHHhcCCCCchh
Q 037414 389 NVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.+.+|...|+......|+++..
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 8888888888888888988643
No 422
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.05 E-value=1e+02 Score=32.39 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=38.4
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
|...+.+.|...+|-.++.+. .+ ...+.++-.+.+++....+++.|++.|++++++.|+++..-..|..+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 334444555555555554432 11 12333555566666666667777777777777776666655554443
No 423
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.12 E-value=4.1e+02 Score=25.74 Aligned_cols=176 Identities=14% Similarity=0.063 Sum_probs=92.4
Q ss_pred CHHHHHHHHHhc-c-CCChhhHHHHHHHHHHcC-----ChHHHH--------HHHHHh-hhCCCCCC------HHHHHHH
Q 037414 255 SIDSAREIFDRM-R-QKNVISWSAMIAAYGYHG-----QGKKAL--------DLFPMM-LSSRVLPN------RITFVSL 312 (577)
Q Consensus 255 ~~~~A~~~~~~~-~-~~~~~~~~~li~~~~~~g-----~~~~A~--------~l~~~m-~~~g~~p~------~~t~~~l 312 (577)
.++.+.++...+ . +++...|..++..+.... ..+... .++..+ .+.|..++ .......
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 456777777777 3 467777777665543321 111111 122211 22244443 2222222
Q ss_pred -HHHHh-ccCCHHHHHHHHHHhhHhcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc
Q 037414 313 -LYACS-HTGLVEEGLRLFSSMWDDFAV---RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH 387 (577)
Q Consensus 313 -l~a~~-~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 387 (577)
+...+ ..+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+....
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 33333 122256788888888653111 3455666677777778888776666666665456777888899999889
Q ss_pred CCHHHHHHHHHHHHhcC-CCCchhHHHHHHHHhccCCh--hHHHHHH
Q 037414 388 KNVDLAEMAAKSLLERQ-PQNPGHYVLLSNVYANAGRW--QDVAKIR 431 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~ 431 (577)
.+.+...++++.++..+ .+....+..+. .+...+.. +.+.+.+
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFF 260 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHH
Confidence 99999999999988853 23333444443 33323322 4454444
No 424
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.03 E-value=3.6e+02 Score=25.07 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=39.2
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 259 AREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 259 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
+..+|+-.-+|.+.....|+..+. .+++++|.+.+.++-+.|..|.... +.+...+-
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K 283 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVVK 283 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH
Confidence 344555555677777777777654 5678999999999999998887653 34455543
No 425
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=35.48 E-value=2.5e+02 Score=23.13 Aligned_cols=95 Identities=7% Similarity=0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH---HHHHHHHhcC-------CChHHHHHHHHHHHHcCCCCcHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL---PFVIRACRDR-------KDIVMGRLIHDIVLKSGLDIDQFV 195 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~-------~~~~~a~~~~~~~~~~g~~~~~~~ 195 (577)
....++.+.+..-.-.++++..++....-.|..+.- +.-++.|... +.....-.+++.+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 455555666666666677777777665544443321 2223333321 222333456677888887766777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
+..+-..+.+..+..+|..+|+-+.
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kllk 125 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLLK 125 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHHh
Confidence 8888888888899999999998654
No 426
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.17 E-value=5.5e+02 Score=26.93 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=50.4
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC
Q 037414 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236 (577)
Q Consensus 157 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~ 236 (577)
|.....+++..+...-..+-++.+..+|+..| .+-..+-.++..|... ..++-..+++++.+-+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df------------ 129 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF------------ 129 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc------------
Confidence 55556666666666666666666666666654 3445566666666665 44444555554433211
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhc
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRM 266 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~ 266 (577)
.|++....|+..|-+ ++.+.+...|.++
T Consensus 130 -nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 130 -NDVVIGRELADKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred -hhHHHHHHHHHHHHH-hchhhHHHHHHHH
Confidence 133344444544444 5555555555544
No 427
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.48 E-value=1.7e+02 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=18.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
+.......|+.++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444567788899998888888765
No 428
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.47 E-value=63 Score=29.64 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=39.5
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 352 LGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
..+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+.+.|.+.+++.++.+|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566777777777666 3344 45577777777778888888888888888777765
No 429
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.61 E-value=5.2e+02 Score=26.18 Aligned_cols=108 Identities=14% Similarity=0.038 Sum_probs=49.6
Q ss_pred HcCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc--hHHHHHHHHhcCCChHHHH
Q 037414 103 ALHKALTDAHALFNGMKERDSV--SWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY--TLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 103 ~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 178 (577)
++.|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+.
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 4556777766666653333221 1223334445556643 344455566555432 1122334444567766554
Q ss_pred HHHHHHHHcCCCCcHH---HHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 179 LIHDIVLKSGLDIDQF---VCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
.+++ .|...+.. .....+...+..|+.+-+..+++.
T Consensus 86 ~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ 124 (413)
T PHA02875 86 ELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR 124 (413)
T ss_pred HHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 4443 33211100 012233444556676666666554
No 430
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.26 E-value=4.3e+02 Score=25.04 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=48.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
-|+.....+...|.+.|++.+|+..|-.-.+++...+..++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46788889999999999999998887666555444443344333333433333 222222333 344
Q ss_pred ccCCHHHHHHHHHHhhHh
Q 037414 318 HTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~ 335 (577)
..+++..|...+....+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877766543
No 431
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.19 E-value=1.4e+02 Score=22.93 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 037414 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 76 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 139 (577)
...++..+.+.|+-.+. .+ -...+...+.+.+.++++.++.+...+|..+..++-..+..
T Consensus 22 ~~~v~~~L~~~gvlt~~-~~---~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 22 LDELLIHLLQKDILTDS-MA---ESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred HHHHHHHHHHcCCCCHH-HH---HHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 44577777777754322 22 22333456778888888888888888888888888665543
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=32.79 E-value=63 Score=22.70 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=20.2
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIR 151 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 151 (577)
|-.-.--+|.+|.+.|++++|.++..++..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567788888888888888777754
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.56 E-value=67 Score=30.84 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQ 155 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 155 (577)
||..|....+.|+.++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 566666666666666676666666666654
No 434
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.47 E-value=6.6e+02 Score=27.01 Aligned_cols=314 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCC-----------ChhHHHHHHHHHHHC---
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE----RDSVSWSVMVGGFSKVA-----------DFINCFETFREFIRC--- 152 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~--- 152 (577)
++.-|+ .+..+.-.|.++.|.+++..... .....++.++....+.- ++..+.+-++.....
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~s~~~~~~~~~~~~~~~~LL~~~P~~~~~~~~s~~~f~~~~~~W~~~~~~l~~ 226 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLHSSYQSYSLQSAFEALIQLLSSMPRYRPNSGQSESEFSSQWREWKSECRRLRS 226 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TTTTTTTHHHHHHHHHHHHHHTT------------SS-HHHHHHHHHHHHHHHH
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhCCCccccchhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred -CCCCCcchHHHHHHHHhc------------------------------CCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 153 -GMQLDSYTLPFVIRACRD------------------------------RKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 153 -g~~p~~~t~~~ll~~~~~------------------------------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
...........=+....+ .+..+.-..+.+...+.. ++|...---.+-
T Consensus 227 ~~~~~~~~~~~~~L~~l~~Il~G~~~~i~~~~~~WyE~~~a~~ly~~P~~~~~e~l~~~a~~~~~~~-~~~~~~~~e~~~ 305 (566)
T PF07575_consen 227 SSLQDGPFEIRENLEDLLKILLGDEDTILEYSQDWYEALVALLLYVDPTCKPFELLHEYAQSCLEEF-PPDSTNPLEQIL 305 (566)
T ss_dssp HS---S-HHHHHHHHHHHHHHHT-HHHHHHT-SSHHHHHHHHHHHT------TTTHHHHHHHHHHHS----TTSTTHHHH
T ss_pred HhhccCchhhHHHHHHHHHHHCCCHHHHHHHhCcHHHHHHHhheeeCCCcchhhhHHHHHHHHHhcC-CCCCCCHHHHHH
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHH-HHHHHH--HhccC----------
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID-SAREIF--DRMRQ---------- 268 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~-~A~~~~--~~~~~---------- 268 (577)
...-.|++..+.+....+.. |..+-..+.+.+..+|-++ .-..-+ ..+.+
T Consensus 306 ~~i~~~d~~~vL~~~~~~~~-----------------~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L 368 (566)
T PF07575_consen 306 LAIFEGDIESVLKEISSLFD-----------------DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSL 368 (566)
T ss_dssp HHHHTS--GGGHHHHHHH-------------------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHcc-----------------chhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHH
Q ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH
Q 037414 269 -KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347 (577)
Q Consensus 269 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 347 (577)
.+...|..-+..+...++.. ....+.+...-.-.+.....-++..|.+.|..+.+.++.+.+-.+ .-...-|..
T Consensus 369 ~s~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---~~~~~~~g~ 443 (566)
T PF07575_consen 369 MSHHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR---LLKEGRYGE 443 (566)
T ss_dssp HT-TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HHHCCCHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH--hccC
Q 037414 348 MVDLLGRAGRLDEALKLIESM---SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY--ANAG 422 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g 422 (577)
-+..+.++|+...+..+.+.+ ....+......++....... .-.+....|..+-+.| .+.|
T Consensus 444 AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~~~~ll~~i~~~~--------------~~~~~L~fla~yreF~~~~~~~ 509 (566)
T PF07575_consen 444 ALSWFIRAGDYSLVTRIADRLLEEYCNNGEPLDDDLLDNIGSPM--------------LLSQRLSFLAKYREFYELYDEG 509 (566)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcccHHHHHHhcchh--------------hhhhhhHHHHHHHHHHHHHhhh
Q ss_pred ChhHHHHHHHHHhhCCCccC
Q 037414 423 RWQDVAKIRDLMTRRRLKKI 442 (577)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~ 442 (577)
++.+|.+.+-.+.+.++.|.
T Consensus 510 ~~~~Aa~~Lv~Ll~~~~~Pk 529 (566)
T PF07575_consen 510 DFREAASLLVSLLKSPIAPK 529 (566)
T ss_dssp --------------------
T ss_pred hHHHHHHHHHHHHCCCCCcH
No 435
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.68 E-value=2.2e+02 Score=30.23 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhC-CCCC--CHh
Q 037414 302 VLPNRITFVSLLYACSHTG--LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG-RAGRLDEALKLIESM-SVEK--DEG 375 (577)
Q Consensus 302 ~~p~~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m-~~~p--~~~ 375 (577)
-.|+..|...++.-....- .-+-|-.++..|. . .+.|-=...| +...|. -.|+...|.+.+... ...| ..+
T Consensus 567 ~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 567 KMPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-K-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred cCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-C-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 3466666655554433221 2234455555552 2 2223211111 122343 368888898888776 3344 223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
....|.+...+.|-...|-.++.+.+.+.-..|-++..+.++|....+.+.|.+.|+...+..
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 455566777777888889999999888887778899999999999999999999998776654
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.23 E-value=4.2e+02 Score=24.40 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP---NRITFV--SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTC 347 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 347 (577)
-+|.|+--|.-+..+.+|.+.|.. +.|+.| |..++. .-|......|+++.|.+.......+ -+..|...+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 345555555444445555555543 334444 333332 3344556667777777766665322 22333322222
Q ss_pred HHH----HHHHcCCHHHHHHHHHhC
Q 037414 348 MVD----LLGRAGRLDEALKLIESM 368 (577)
Q Consensus 348 li~----~~~~~g~~~~A~~~~~~m 368 (577)
|.. -+.|.|..++|+++.+.=
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 221 145677788888777653
No 437
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.17 E-value=4.3e+02 Score=24.41 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH--HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSA--MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
+..+++++.-..+ .+-.+.++.+..|....|-. ++.++...|+.+.|+.+++.+.-....++..+....+ ...+
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~---La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA---LANG 154 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH---HHcC
Q ss_pred CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHH
Q 037414 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW 377 (577)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 377 (577)
.+.+|..+-+...+..+ ...+..++..+.....-....+.+-.++..+....|
T Consensus 155 ~v~EAf~~~R~~~~~~~----~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~~ 207 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDELR----RRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQW 207 (226)
T ss_pred CHHHHHHHHHhCchhhh----HHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHHH
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.76 E-value=2.9e+02 Score=24.58 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=21.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 037414 349 VDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGA 383 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 383 (577)
+-.|.+.|.+++|.+++++.--.|+......-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHH
Confidence 34577788888888888777325555544444433
No 439
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.57 E-value=3.2e+02 Score=22.50 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcC--CCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 393 AEMAAKSLLERQ--PQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 393 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
...+|..|...+ ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566788887664 5556778888889999999999998885
No 440
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.19 E-value=6.2e+02 Score=25.68 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhC---------CCCCCH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSS---------RVLPNR 306 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~p~~ 306 (577)
.+.-+.+-|..+|+++.|.+.|-+..+ .-+..|-.+|..-.-.|++........+.... -+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456678899999999999999999654 22335666677767778887777766665543 123333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
..+..+...+. +.++.|.+.|-..
T Consensus 232 ~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 44444444333 3556665555544
No 441
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.17 E-value=8.7e+02 Score=27.38 Aligned_cols=170 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc--hhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD--VILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMI 278 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 278 (577)
..|...|++++|.++ .+..|+ ..++..-.+.|...+++..|-+++-++ ..++-.+.
T Consensus 366 k~yLd~g~y~kAL~~------------------ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVa 423 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEI------------------ARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVA 423 (911)
T ss_pred HHHHhcchHHHHHHh------------------ccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHH
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH------hccCCHH------------HHHHHHHHhhHhcCCCC
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC------SHTGLVE------------EGLRLFSSMWDDFAVRP 340 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~------~~~g~~~------------~a~~~~~~m~~~~~~~p 340 (577)
--|....+.+ ++..|-.=+-..++|...+-..++... .+.++++ +-..+-+++.+.....-
T Consensus 424 LKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~ 502 (911)
T KOG2034|consen 424 LKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHK 502 (911)
T ss_pred HHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
+...+.+........|+.+++..+-.-|+ -|..++.-+.+++++++|++++..
T Consensus 503 ~~~nretv~~l~~~~~~~e~ll~fA~l~~------d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 503 DELNRETVYQLLASHGRQEELLQFANLIK------DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HhhhHHHHHHHHHHccCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
No 442
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.04 E-value=4.3e+02 Score=23.82 Aligned_cols=126 Identities=10% Similarity=0.115 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVD 350 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~ 350 (577)
...+.++..+...|+++.|-+.|.-+.... +.|..+ .+.-+.+++..- +-.... .-++.|+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~------------~W~iG~eIL~~~----~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRS------------LWGIGAEILMRR----GEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHh------------cchHHHHHHHcC----CCcchHHHHHHHHHH
Confidence 356778888889999999999999888753 444332 234444444433 112222 45556666
Q ss_pred HHHHcCCHHHHHH------HHHhCC--CCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC---CchhHHHH
Q 037414 351 LLGRAGRLDEALK------LIESMS--VEKD---EGLWGALLGACRIHKNVDLAEMAAKSLLER--QPQ---NPGHYVLL 414 (577)
Q Consensus 351 ~~~~~g~~~~A~~------~~~~m~--~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~---~~~~~~~l 414 (577)
.|.......+... +|+.-. ..|. ...|..++..-.+....+.+.++.+++-++ .|| ++..|...
T Consensus 105 ~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~ 184 (199)
T PF04090_consen 105 FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIR 184 (199)
T ss_pred HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 6664433333221 111110 1121 124555555554455566777888888775 355 44444433
No 443
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=29.01 E-value=2.5e+02 Score=29.26 Aligned_cols=89 Identities=13% Similarity=0.217 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--------CchhHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--------NPGHYV 412 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 412 (577)
++..|-..+.-|...+++++|.++-+-.+ +...|..+......+.+..-++..+..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 44567777778888999999999988765 5678888888878888877777666655443211 011112
Q ss_pred HHHHHHhccCChhHHHHHHH
Q 037414 413 LLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~ 432 (577)
.+..-..-.|+..+|.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 23333445677777776653
No 444
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=28.87 E-value=1.1e+02 Score=29.29 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=32.2
Q ss_pred HHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 353 GRAGRLDEALKLIESM-SVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.+.|+.++|..+|+.. ...|+ +....-+......++++-+|.+.+-+++...|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3566677777766654 33443 2233333344445556666666666666666666543
No 445
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.78 E-value=3.3e+02 Score=22.44 Aligned_cols=57 Identities=14% Similarity=-0.006 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHH-HHHHHHHHhcCCHHHHHHHHHH
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLW-GALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
.+..++.-++.-.|..++|.++++..+.-++-... .-++..|....+.++..++-++
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455555666666667777666666544443322 3355566666555555554443
No 446
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.68 E-value=6.9e+02 Score=26.05 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=79.5
Q ss_pred HhCCChhHHHHHHHHHHHCC-CCCC--c-----chHHHHHHH-HhcCCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHH
Q 037414 134 SKVADFINCFETFREFIRCG-MQLD--S-----YTLPFVIRA-CRDRKDIVMGRLIHDIVLKSGLDIDQ--FVCAALVDM 202 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~g-~~p~--~-----~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~ 202 (577)
.-.|++.+|++-...|.+-- -.|. . .....++.. |...+..+.|+.-|....+.--..|. ..-..+.-.
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 44799999999999998632 1233 1 122334444 44568888998888777665434443 333456778
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
|.+.|+.+.-.++++.+..++..++.+-.. ...++-.-.-...+.+++.+|...+.+..+
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l------~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRL------EASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999999999887665444332110 111111112223467888888888877654
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.11 E-value=6.5e+02 Score=25.55 Aligned_cols=186 Identities=12% Similarity=0.069 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHH
Q 037414 93 IVANKLLYIYALHKALTDAHALFNGMKER------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIR 166 (577)
Q Consensus 93 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 166 (577)
..+.-+-+.|..+|+++.|.+.+.+..+- .+..|-.+|..-.-.|+|........+..+. |+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~-------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--------
Confidence 35677788888999999999988885431 2334656666666667777666665555442 110
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHH
Q 037414 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246 (577)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L 246 (577)
.... ...+++....+..|.....+ ++..|.+.|-.... +..-|+.+++ +.|+.+|..|
T Consensus 220 --------------~~~~-~q~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~-~~~d~~~ivt----psdv~iYggL 277 (466)
T KOG0686|consen 220 --------------NENL-AQEVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEF-DHCDYPEIVT----PSDVAIYGGL 277 (466)
T ss_pred --------------hhhH-HHhcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCC-CccCccceec----chhhHHHHhh
Confidence 0000 01123445555555555544 55665555533321 1111222111 2234444332
Q ss_pred HHHHHhcCCHHHH-----HHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhC-----CCCCCHHHHHHHHH
Q 037414 247 IDMYAKCGSIDSA-----REIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS-----RVLPNRITFVSLLY 314 (577)
Q Consensus 247 i~~~~~~g~~~~A-----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~ll~ 314 (577)
.+.+--++-+-- -..|....+-.+..+..+..-| .+++...+++++++... =+.|...+.-.+|.
T Consensus 278 -cALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 278 -CALATFDRQDLKLNVIKNESFKLFLELEPQLREILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred -HhhccCCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
Confidence 222222221111 1233444444555555555544 35677778888777543 24566666655554
No 448
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.98 E-value=1.5e+02 Score=21.68 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALH 105 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 105 (577)
.+.|++++..+..-. ..++..||++-..+.+.
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 567888888876543 67899999988777654
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=27.75 E-value=3e+02 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=18.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
++..+...+..-.|.++++.+.++ +...+..|----++.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCC
Confidence 344444444444555555555432 222223332333344444443
No 450
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.42 E-value=7.1e+02 Score=26.38 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCC--Ccc---hHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKER--DSV---SWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
..|+.-|.+.+++++|..++..|.=. ... +.+.+...+.+..--.+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 35788999999999999999988521 122 2334444455554444555555555543
No 451
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=26.86 E-value=1.6e+02 Score=28.52 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 338 VRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGA-LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 338 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
+.-|+..|.-.+.--.+.|.+.+.-.+|.+. ...| |+..|-. --.-+..+++++.+..+|.+.++.+|.+|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3345555555554444556666666676665 3345 4445543 22235678899999999999999999998876544
Q ss_pred H
Q 037414 415 S 415 (577)
Q Consensus 415 ~ 415 (577)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 452
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.81 E-value=9.9e+02 Score=27.24 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccCCC--h-----hhHHHHHHHHHHcCCh--HHHHHHHHHhhhCCCCCCHHHHHH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQKN--V-----ISWSAMIAAYGYHGQG--KKALDLFPMMLSSRVLPNRITFVS 311 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ 311 (577)
.-|..|+..|...|+.++|++++.+..+.+ . ..+--++..+.+.+.. +-+.++-+...+....--...|..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 457889999999999999999999887522 1 1122244444444433 333333333322211000000111
Q ss_pred ------------HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH
Q 037414 312 ------------LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR 354 (577)
Q Consensus 312 ------------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 354 (577)
.+-.|......+-+..+++.+... .-.++....+.++..|++
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 112334456667788888888765 334566677778877764
No 453
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.76 E-value=2.2e+02 Score=21.05 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=21.2
Q ss_pred HcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 037414 103 ALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS 158 (577)
Q Consensus 103 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 158 (577)
++.|+++-...+++.-...+. -+..+...+..|+ .++++.+.+.|..|+.
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~----~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 5 AQNGNLEILKFLLEKGADINL--GNTALHYAAENGN----LEIVKLLLENGADINS 54 (89)
T ss_dssp HHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTT----HHHHHHHHHTTTCTT-
T ss_pred HHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCC----HHHHHHHHHhcccccc
Confidence 445555555555553222222 1113333444444 3444444555555543
No 454
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.68 E-value=3.6e+02 Score=22.13 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 176 MGRLIHDIVLKSGLDID-QFVCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
.+..+|..|...|+-.. ...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67778888877775443 56677777778888888888888753
No 455
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=26.60 E-value=1.6e+02 Score=18.03 Aligned_cols=18 Identities=17% Similarity=-0.151 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 037414 379 ALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~ 396 (577)
.+...+-..|+.++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555666666666
No 456
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.47 E-value=4.8e+02 Score=23.45 Aligned_cols=18 Identities=11% Similarity=0.447 Sum_probs=14.5
Q ss_pred hccCChhHHHHHHHHHhh
Q 037414 419 ANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~ 436 (577)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467889999999888864
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.81 E-value=8.9e+02 Score=26.39 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=72.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC------ChhhHHHHHHHHHHcCChH------HHHHHHHHhhhCCCCCCHHHHHHH
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQK------NVISWSAMIAAYGYHGQGK------KALDLFPMMLSSRVLPNRITFVSL 312 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~------~A~~l~~~m~~~g~~p~~~t~~~l 312 (577)
+|..+|...|++-.+.++++..... -...||.-|..+.+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 6899999999999999999987642 2356888888889999764 3444444443 56688999988
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHhC
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR--AGRLDEALKLIESM 368 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~m 368 (577)
+.+-...-+-..+.-++.+.+.. +.|.+++.+.. .=.+++..-+.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~--------s~ngv~di~~~~~v~s~~ev~limd~l 159 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR--------SANGVIDILMHESVFSPEEVKLIMDQL 159 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh--------hhhhHHHHHhhhccCCHHHHHHHHHhc
Confidence 87765544434444444444321 12334443332 22456666666766
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.29 E-value=6.4e+02 Score=24.55 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH----------cCCHHH
Q 037414 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR----------AGRLDE 360 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 360 (577)
.++++.|.+.++.|.-..|.-+.-.+++.=.+.....+|+.+..+ ..-|..|+..++. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777777778888777777766677777777777777777643 1124444433332 356666
Q ss_pred HHHHHHhC
Q 037414 361 ALKLIESM 368 (577)
Q Consensus 361 A~~~~~~m 368 (577)
-.++++.-
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 66666554
No 459
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.29 E-value=3.4e+02 Score=21.42 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=12.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHH
Q 037414 129 MVGGFSKVADFINCFETFREFI 150 (577)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~m~ 150 (577)
++..|...+++++|...+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 4445555566666665555543
No 460
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.27 E-value=2.7e+02 Score=24.30 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=35.3
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 037414 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359 (577)
Q Consensus 297 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (577)
+...|++++..-. .++..+...+..-.|.++++.+.+. +...+..|..--++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666665433 3444444445555677788777544 55555555555566777777654
No 461
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.26 E-value=1.4e+02 Score=30.23 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
+....|+..++-.|++..|.++++.+.-.....++.. ....+.++--+.-+|.-.+++.+|.++|..+.
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V-----~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV-----PACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC-----cchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788889999999999999988753211112111 12245566667778888888888888887753
No 462
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.16 E-value=6.2e+02 Score=24.36 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=7.9
Q ss_pred chHhHHHhccc
Q 037414 510 SEKLAIAFGLI 520 (577)
Q Consensus 510 ~~~la~~~~~~ 520 (577)
.+.||..||.-
T Consensus 334 l~sMA~tFgVS 344 (412)
T COG5187 334 LESMAQTFGVS 344 (412)
T ss_pred HHHHHHHhCcc
Confidence 46788888863
No 463
>PRK13342 recombination factor protein RarA; Reviewed
Probab=25.12 E-value=7.5e+02 Score=25.26 Aligned_cols=167 Identities=16% Similarity=0.067 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHc---CC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHH
Q 037414 173 DIVMGRLIHDIVLKS---GL-DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVID 248 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~---g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~ 248 (577)
..++...++...... |+ ..+......++... .|+...+..+++.... ..
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~-------------------------~~ 204 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAAL-------------------------GV 204 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHH-------------------------cc
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHc---CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC----
Q 037414 249 MYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYH---GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL---- 321 (577)
Q Consensus 249 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 321 (577)
-......+.++........+++...+..+++++.+. ++++.|+..+..|.+.|..|....-..+..++...|.
T Consensus 205 ~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~ 284 (413)
T PRK13342 205 DSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPN 284 (413)
T ss_pred CCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHH
Q ss_pred -HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 322 -VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 322 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
...|...++.. +.-|.+-......-.+-.++.+-+-..+..-+..
T Consensus 285 ~~~~~~~~~~~~-~~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 285 ALQVAVAAADAV-ERIGMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 464
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.02 E-value=5.8e+02 Score=26.01 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-----------KNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
.....|++.++-.||+..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688899999999999999987741 234566777888899999999999998765
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.00 E-value=3.1e+02 Score=20.86 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 037414 179 LIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221 (577)
Q Consensus 179 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (577)
++|+.....|+..|..+|..+++...-.=.++...+++..|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6777777778888888888888877776677777777777643
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.93 E-value=3.3e+02 Score=23.80 Aligned_cols=33 Identities=6% Similarity=-0.020 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 208 (577)
.|.++++.+.+.+...+..|--.-++.+...|-
T Consensus 43 Sa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 43 SAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 444555555444433333333333344444443
No 467
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=24.82 E-value=3.1e+02 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
..++-.|....+++..+++.+.++.
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHh
Confidence 3344455555666666666666654
No 468
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.55 E-value=6.6e+02 Score=24.43 Aligned_cols=180 Identities=16% Similarity=0.190 Sum_probs=85.0
Q ss_pred HHHHHhcCCCCcchhhHHHHHHHHHhcCC-HHHHHHHHHhcc-CCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 227 WTVMIGANKFLLDVILGTAVIDMYAKCGS-IDSAREIFDRMR-QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 227 ~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
.+++.-+.|..|.......+=+-+.+.|- ..-|.++|..-. +.| .+.+|+.+.+-+.-+.-+++ ++|
T Consensus 153 ~Tal~l~nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef--------fPp 221 (412)
T KOG2297|consen 153 LTALLLSNGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF--------FPP 221 (412)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh--------cCC
Confidence 33333335555544444444444555542 334566676644 233 45667766665544444443 477
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HhC--CCCCCH----hHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI-ESM--SVEKDE----GLW 377 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m--~~~p~~----~~~ 377 (577)
+..+-......+...|.-+-..-.-.++. ...-.+.-..|.+-..+...+++..... ++| ..-|+. ..|
T Consensus 222 nkrs~E~Fak~Ft~agL~elvey~~~q~~----~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivW 297 (412)
T KOG2297|consen 222 NKRSVEHFAKYFTDAGLKELVEYHRNQQS----EGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVW 297 (412)
T ss_pred cchhHHHHHHHHhHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeH
Confidence 77776666666665554332211111110 0001111223333334444455554433 233 112433 277
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 378 GALLGACRIHKN-VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 378 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
..++++-.=+.+ ---|.++++++ ..|.-|+.+++.+|+.+-.+-
T Consensus 298 s~iMsaveWnKkeelva~qalrhl--------K~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 298 SGIMSAVEWNKKEELVAEQALRHL--------KQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred hhhhHHHhhchHHHHHHHHHHHHH--------HhhhHHHHHHhcCChHHHHHH
Confidence 777776322211 11223333332 357778888888888765543
No 469
>PRK09857 putative transposase; Provisional
Probab=24.51 E-value=5.3e+02 Score=24.92 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
+..++......++.++-.++++.+.+..|........++.-+.+.|.-+++.++..+|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555456677777777777777666665566667777777778778888889999888874
No 470
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=24.51 E-value=4.7e+02 Score=22.73 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhc----CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-CChh-hHHHHHHH
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGA----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-KNVI-SWSAMIAA 280 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~----~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~li~~ 280 (577)
+.++++.++|..+..+.......|+++ .|-+--..+..+++.++.-.|..++|.++.....- ++-. .=.-++..
T Consensus 78 cSW~~~~~~f~~l~~~~~R~LP~LvAaNPVNYGkp~kLss~EAlaAaLYI~G~~deA~~lls~F~WG~~FleLN~e~Le~ 157 (179)
T COG2042 78 CSWNRVERVFKKLRGREHRRLPFLVAANPVNYGKPFKLSSAEALAAALYIVGFKDEASELLSKFKWGHTFLELNKELLEE 157 (179)
T ss_pred ccHHHHHHHHHhcCccccccccHhhhcCCcccCCcchhchHHHHHHHHHHhCcHHHHHHHHhhCcccHHHHHHhHHHHHH
Confidence 456777777777665433333333333 34444455667788888888888888888776653 1111 11235667
Q ss_pred HHHcCChHHHHHHHHHhh
Q 037414 281 YGYHGQGKKALDLFPMML 298 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~ 298 (577)
|.+..+-.+..++=++..
T Consensus 158 Y~~a~~s~eVveiq~~~l 175 (179)
T COG2042 158 YSNAEDSAEVVEIQEEYL 175 (179)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 777666655555544443
No 471
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=24.47 E-value=3.4e+02 Score=24.32 Aligned_cols=54 Identities=7% Similarity=0.145 Sum_probs=29.8
Q ss_pred HHHHHhcCCHHHHHHHHHhccC------CChhhHHHHHH-HHHHcCC--hHHHHHHHHHhhhC
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ------KNVISWSAMIA-AYGYHGQ--GKKALDLFPMMLSS 300 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~~ 300 (577)
+-.....|++++|..-++++.+ .-...|..+.. +++.++. +-+|.-++.-....
T Consensus 36 aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 36 AIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3334556777777777776643 22334555544 5665553 44566555555443
No 472
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=24.38 E-value=1.6e+02 Score=23.49 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 322 (577)
++..+...+..-.|.++++++.+.+..++..|.-..|..+...|.+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555555667777777777776666777666666666666644
No 473
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=24.06 E-value=4.4e+02 Score=22.20 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHcCCHH---HHHHHHHhC-C-CCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 340 PDVKHYTCMVDLLGRAGRLD---EALKLIESM-S-VEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
++..+--.+.-++.+..+.+ +-..+++++ + -.|+ ....--|.-++.+.++++.+.++.+.+++.+|+|..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 44444444444455444433 333444444 1 1222 122333445677888888888888888888888863
No 474
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.83 E-value=1.2e+03 Score=27.33 Aligned_cols=22 Identities=18% Similarity=0.063 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc
Q 037414 246 VIDMYAKCGSIDSAREIFDRMR 267 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~ 267 (577)
+..+|..+|...+|...|.+..
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHh
Confidence 3344667777888877777654
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.71 E-value=1.2e+02 Score=22.11 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
...|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 446888899999999888888888776666666654443
No 476
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.46 E-value=3.8e+02 Score=22.71 Aligned_cols=61 Identities=8% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 037414 147 REFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV 208 (577)
Q Consensus 147 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 208 (577)
..+.+.|++++.. -..++..+.+.++.-.|..+|+.+.+.+...+..|--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3344455544332 223444444444445566666666665544444333334455555553
No 477
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.30 E-value=8.8e+02 Score=25.43 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cchHHHHHH-HHhcCCChHHHHHHHHHHHHcC
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD-SYTLPFVIR-ACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g 188 (577)
|+..|...+.-+-+.+.+.+.-.+|.+|... .|+ +..|..... -+....+++.|+.++..-++.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 8889999998777777799999999999974 333 233322222 2334445999999998887764
No 478
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.26 E-value=1.5e+02 Score=27.29 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=50.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
....+|.+.+.+++.+++++-|.....|.-+...-.+.|+++.|.+.+++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999999999999999999999999999887654
No 479
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.24 E-value=3.9e+02 Score=26.30 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=56.8
Q ss_pred HHHHHcCCHHHHHHHHHhC----CCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 350 DLLGRAGRLDEALKLIESM----SVEK--DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.-|.+..++..|...|.+- .-.| +.+.|+.=..+-...|++..++.-..++++.+|.+...|.-=+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 3466777888888887665 1123 344666656666667888888888888888888888777776777776666
Q ss_pred hhHHHHHHH
Q 037414 424 WQDVAKIRD 432 (577)
Q Consensus 424 ~~~A~~~~~ 432 (577)
+.+|....+
T Consensus 169 ~~~a~nw~e 177 (390)
T KOG0551|consen 169 FAEAVNWCE 177 (390)
T ss_pred HHHHHHHHh
Confidence 555554443
No 480
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=23.19 E-value=6.5e+02 Score=23.84 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=53.7
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hhHHHHHHHHhccCCh
Q 037414 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP-------GHYVLLSNVYANAGRW 424 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~ 424 (577)
+.|.=....=..+|+..+ .|. .|+.-|.+.|+.+.|-.++--+...++.+. ..-.-|+......|+|
T Consensus 163 C~RKtE~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w 236 (258)
T PF07064_consen 163 CARKTEVRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDW 236 (258)
T ss_pred HHHhhHHHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccH
Confidence 333333444445666655 332 577788889999999888777765553332 2334567777889999
Q ss_pred hHHHHHHHHHhhCC
Q 037414 425 QDVAKIRDLMTRRR 438 (577)
Q Consensus 425 ~~A~~~~~~m~~~g 438 (577)
+-+.++.+-+..-+
T Consensus 237 ~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 237 DLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988887543
No 481
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.80 E-value=2.5e+02 Score=22.16 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=9.7
Q ss_pred HHHHHHHcCChHHHHHHHHHh
Q 037414 277 MIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m 297 (577)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555443
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.41 E-value=3.3e+02 Score=25.46 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=7.6
Q ss_pred HHHHhCCChhHHHHHH
Q 037414 131 GGFSKVADFINCFETF 146 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~ 146 (577)
..|...|++.+|++-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 4444445555544444
No 483
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.12 E-value=1.1e+02 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHCCcccCCCcc
Q 037414 468 EEIYRMLVTLSEKLELAGYIPDTNFE 493 (577)
Q Consensus 468 ~~~~~~l~~l~~~m~~~g~~pd~~~~ 493 (577)
.++...+++..++++..|+.||-..+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45667778888999999999997654
No 484
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.03 E-value=1e+03 Score=25.61 Aligned_cols=60 Identities=5% Similarity=-0.046 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCC-cchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 037414 90 TNLIVANKLLYIYALHKALTDAHALFNGMKERD-SVSWSVMVGGFSKVADFINCFETFREFIR 151 (577)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 151 (577)
+....++.|+..+.. =+.++-.+++.++.. . ...|..++++....|-.....-+.+.+..
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 455566777766643 345666666666554 3 56777788888887775544444444444
No 485
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.84 E-value=1.5e+02 Score=24.04 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=31.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 321 (577)
.++..+...+.+-.|.++++.|.+.|...+..|.-.-|..+...|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 4566666666677888888888888777777776666777666654
No 486
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.64 E-value=8.2e+02 Score=24.48 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=47.0
Q ss_pred CHhHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCC-CchhHHHHHHHHh-ccCChhHHHHHHHHHhh
Q 037414 373 DEGLWGAL---LGACRIHKNVDLAEMAAKSLLERQPQ-NPGHYVLLSNVYA-NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 373 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 436 (577)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||-.....|+.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455544 35577888999999999999999988 8777777777774 67777777777766544
No 487
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.37 E-value=6.8e+02 Score=23.45 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=68.6
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHH-HHHHHHHHcCCH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITF-VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT-CMVDLLGRAGRL 358 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~ 358 (577)
|.....++.|+..|.+.+. +.|+..+| ..=+..+.+..+++.+.+=-...+ .+.|+..--. .+-..+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 3344567888887777665 57777554 444555666777777766555553 4667754333 344455666778
Q ss_pred HHHHHHHHhC-------CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 359 DEALKLIESM-------SVEKDEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 359 ~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
++|...+++. ++.|-...+..|..+-...=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888777665 3444555777777664444444455554443
No 488
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.21 E-value=3.3e+02 Score=21.92 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=31.3
Q ss_pred HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037414 63 FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL 104 (577)
Q Consensus 63 ~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 104 (577)
..-.|..|...++|.+|.+.|.++| ..+....+.|-..+.+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~ 107 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVK 107 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445788888999999999999999 6677766666555443
No 489
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.21 E-value=2.7e+02 Score=20.81 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHH
Q 037414 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAAL 199 (577)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 199 (577)
++++.+.+....++|..+++.+.+.| ..+....+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
No 490
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=20.88 E-value=45 Score=17.42 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=8.6
Q ss_pred CCchhhHHhhhh
Q 037414 538 GDCHSFIKHVSA 549 (577)
Q Consensus 538 ~~~~~~~~~is~ 549 (577)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 356888888874
No 491
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.75 E-value=4.8e+02 Score=21.43 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 037414 343 KHYTCMVDLLGRAGRLDEALK 363 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~ 363 (577)
..+..|..++...|++++++.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~ 76 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQ 76 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHH
Confidence 344556666666666665543
No 492
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.61 E-value=6.2e+02 Score=23.61 Aligned_cols=53 Identities=9% Similarity=-0.125 Sum_probs=26.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQ------NPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
.-|...|++++|.++++.+...... .......+..++...|+.++...+--+|
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455556666666666555332111 1223444555666666666665554443
No 493
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=20.59 E-value=21 Score=25.43 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=16.8
Q ss_pred eEEEecCCcccccccccccCCC
Q 037414 554 VIIVRDANRFHHFEGGACSCRD 575 (577)
Q Consensus 554 ~~~~~~~~~~h~~~~g~~s~~~ 575 (577)
.|=+.|.+..|+|+||+-+-+|
T Consensus 9 si~LkDGstvyiFKDGKMamEd 30 (73)
T PF11525_consen 9 SIPLKDGSTVYIFKDGKMAMED 30 (73)
T ss_dssp EEEBTTSEEEEEETTS-EEEEE
T ss_pred eEecCCCCEEEEEcCCceehhh
Confidence 3668899999999999976443
No 494
>PRK02287 hypothetical protein; Provisional
Probab=20.37 E-value=5.9e+02 Score=22.32 Aligned_cols=57 Identities=18% Similarity=0.026 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESMSVEKDEG-LWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
+..++.-++.-.|..++|.++++....-++-. .-..++..|....+.++..++-++.
T Consensus 109 ~vEAlAaaLyI~G~~~~A~~ll~~F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~ 166 (171)
T PRK02287 109 SVEALAAALYILGFKEEAEKILSKFKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEY 166 (171)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhhCCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 34455555555566666666655553333222 2233455555555555555444443
No 495
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=20.31 E-value=3.7e+02 Score=20.42 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 037414 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142 (577)
Q Consensus 76 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 142 (577)
+..+++.+.+.|+- +..-+. ..-++..+.+.|.++++.++.+...+|..+..++-..|..+-|
T Consensus 16 v~~ild~L~~~gvl-t~~~~e---~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGVL-TLDEEE---KVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCCC-CHHHHH---HHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 45577777777743 222222 2233556778888888888888888888888777765544433
No 496
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=20.24 E-value=93 Score=22.03 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCc
Q 037414 136 VADFINCFETFREFIRCG-MQLDS 158 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g-~~p~~ 158 (577)
+-+++.|+..|.++...| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 456788888888887654 55444
No 497
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=20.17 E-value=8.5e+02 Score=24.10 Aligned_cols=111 Identities=14% Similarity=0.122 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChH
Q 037414 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGK 288 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (577)
++.|...|..= .+...|..+ -.-.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+
T Consensus 148 ye~a~~Ylsg~--~~~~~WQ~l-----------GLQGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~ 214 (340)
T PF12069_consen 148 YEHAQAYLSGQ--LGWDNWQTL-----------GLQGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPD 214 (340)
T ss_pred HHHHHHHHcCC--cchhHHHHh-----------hhhHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCH
Confidence 56666655431 124455543 34567888999988888777777776644444555555554444333
Q ss_pred H-HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 289 K-ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 289 ~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
. +..+++.+... ||......+++|.+...........+..+++.
T Consensus 215 ~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 215 KLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQS 259 (340)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcC
Confidence 3 44455555544 89999999999999887777666656666543
No 498
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.06 E-value=2.4e+02 Score=20.07 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=0.0
Q ss_pred HhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
+++..++...++.++..+++..-.++++..+.++...|. .+..+|.--+..+++..-+..|.
T Consensus 1 D~~v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 1 DEIVVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp GGTEE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHH
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.01 E-value=3.5e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.+..|.+.|.+++|.+++++..+ +|++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 34568999999999999999887 6665433
Done!