Query 037414
Match_columns 577
No_of_seqs 684 out of 4412
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 20:36:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.4E-34 4.8E-39 311.1 32.1 404 19-438 83-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.3E-31 1.1E-35 284.8 31.8 360 58-437 82-504 (597)
3 4g26_A Pentatricopeptide repea 100.0 6E-29 2E-33 258.0 21.1 202 141-355 8-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 9.7E-29 3.3E-33 256.4 18.9 199 110-320 8-224 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.7E-25 5.8E-30 226.9 29.5 343 73-436 15-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.3E-24 1.1E-28 217.4 36.8 371 26-423 5-388 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 4.6E-22 1.6E-26 205.6 30.2 325 89-433 23-405 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.7E-20 6E-25 193.7 31.9 307 122-438 25-359 (450)
9 2gw1_A Mitochondrial precursor 99.9 2.7E-20 9.3E-25 195.5 31.8 349 71-438 20-479 (514)
10 2gw1_A Mitochondrial precursor 99.9 3.2E-20 1.1E-24 195.0 25.6 370 21-414 7-489 (514)
11 3ieg_A DNAJ homolog subfamily 99.8 6.5E-18 2.2E-22 168.2 36.1 309 123-438 3-336 (359)
12 3fp2_A TPR repeat-containing p 99.8 1.9E-19 6.6E-24 190.3 25.8 394 19-438 24-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 3.2E-18 1.1E-22 170.5 29.0 311 91-420 2-352 (359)
14 3hym_B Cell division cycle pro 99.8 2.4E-17 8.4E-22 162.2 31.1 289 121-425 20-322 (330)
15 3hym_B Cell division cycle pro 99.8 3.9E-17 1.3E-21 160.7 26.1 267 154-437 18-299 (330)
16 1b89_A Protein (clathrin heavy 99.8 7.4E-19 2.5E-23 174.2 12.1 282 104-431 15-305 (449)
17 1fch_A Peroxisomal targeting s 99.8 1.4E-17 4.7E-22 167.0 21.4 296 104-432 37-354 (368)
18 3fp2_A TPR repeat-containing p 99.7 9.5E-16 3.3E-20 161.8 30.1 338 91-438 24-408 (537)
19 4eqf_A PEX5-related protein; a 99.7 3.2E-17 1.1E-21 164.3 16.7 273 123-433 65-352 (365)
20 1b89_A Protein (clathrin heavy 99.7 1.6E-17 5.5E-22 164.7 13.4 312 60-419 6-339 (449)
21 1fch_A Peroxisomal targeting s 99.7 5.7E-16 2E-20 155.1 21.8 293 73-402 41-358 (368)
22 4eqf_A PEX5-related protein; a 99.7 3.9E-16 1.3E-20 156.4 19.6 266 91-399 64-352 (365)
23 3spa_A Mtrpol, DNA-directed RN 99.7 1.5E-17 5.1E-22 177.4 8.7 129 239-368 126-262 (1134)
24 3spa_A Mtrpol, DNA-directed RN 99.7 9.5E-18 3.3E-22 178.9 7.1 155 89-254 124-286 (1134)
25 3cv0_A Peroxisome targeting si 99.7 1.3E-15 4.4E-20 149.5 21.6 276 122-433 20-311 (327)
26 3mkr_A Coatomer subunit epsilo 99.7 2.2E-15 7.4E-20 145.7 22.7 270 133-429 9-286 (291)
27 2xm6_A Protein corresponding t 99.7 1.3E-13 4.5E-18 143.9 37.8 335 72-439 58-434 (490)
28 3mkr_A Coatomer subunit epsilo 99.7 4E-15 1.4E-19 143.8 23.9 245 167-438 8-265 (291)
29 2ooe_A Cleavage stimulation fa 99.7 1.6E-13 5.4E-18 144.8 35.3 367 59-438 12-455 (530)
30 3cv0_A Peroxisome targeting si 99.7 2.3E-15 8E-20 147.7 19.5 275 91-404 20-316 (327)
31 2ooe_A Cleavage stimulation fa 99.7 2.7E-13 9.3E-18 143.0 36.1 349 80-438 2-421 (530)
32 2xm6_A Protein corresponding t 99.7 4.1E-13 1.4E-17 140.1 35.9 319 90-438 37-397 (490)
33 4g1t_A Interferon-induced prot 99.7 1.7E-14 5.7E-19 149.8 25.1 342 90-448 49-470 (472)
34 1xi4_A Clathrin heavy chain; a 99.6 8E-13 2.7E-17 145.7 33.2 340 25-422 1054-1415(1630)
35 2pl2_A Hypothetical conserved 99.6 1.6E-13 5.6E-18 126.4 21.0 195 237-435 2-212 (217)
36 1xi4_A Clathrin heavy chain; a 99.6 5E-12 1.7E-16 139.4 33.5 354 23-430 988-1377(1630)
37 3uq3_A Heat shock protein STI1 99.6 2.6E-13 9E-18 128.0 20.5 221 193-438 5-237 (258)
38 3uq3_A Heat shock protein STI1 99.5 3.8E-13 1.3E-17 126.9 20.2 239 160-416 7-255 (258)
39 3u4t_A TPR repeat-containing p 99.5 1.2E-12 4.2E-17 124.7 22.5 244 163-420 8-267 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-13 8.2E-18 129.8 16.0 240 171-431 18-269 (275)
41 2vq2_A PILW, putative fimbrial 99.5 2.6E-12 8.7E-17 118.4 22.3 199 238-438 6-212 (225)
42 2ho1_A Type 4 fimbrial biogene 99.5 3E-12 1E-16 120.5 22.1 203 193-410 37-245 (252)
43 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 7.9E-17 121.3 21.2 197 240-438 37-239 (252)
44 2vq2_A PILW, putative fimbrial 99.5 4.8E-12 1.6E-16 116.5 22.1 209 191-414 6-222 (225)
45 1ouv_A Conserved hypothetical 99.5 1.1E-11 3.9E-16 118.3 25.4 223 192-438 5-252 (273)
46 2q7f_A YRRB protein; TPR, prot 99.5 9.1E-13 3.1E-17 123.2 16.3 205 194-414 24-233 (243)
47 2q7f_A YRRB protein; TPR, prot 99.5 2E-12 6.7E-17 120.9 18.4 198 238-438 21-223 (243)
48 2pl2_A Hypothetical conserved 99.5 1.8E-12 6.2E-17 119.3 16.9 194 157-368 4-211 (217)
49 3u4t_A TPR repeat-containing p 99.5 9.8E-12 3.4E-16 118.4 22.6 123 98-221 9-136 (272)
50 3sf4_A G-protein-signaling mod 99.5 3E-12 1E-16 129.5 20.0 269 159-436 10-335 (406)
51 4g1t_A Interferon-induced prot 99.5 6.3E-12 2.1E-16 130.3 22.7 324 71-414 65-470 (472)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-12 6.9E-17 123.3 17.6 242 135-397 17-269 (275)
53 3sf4_A G-protein-signaling mod 99.4 9.1E-13 3.1E-17 133.3 15.5 295 122-425 8-364 (406)
54 3ro2_A PINS homolog, G-protein 99.4 3.8E-12 1.3E-16 124.7 18.5 265 165-437 12-332 (338)
55 4a1s_A PINS, partner of inscut 99.4 1.3E-12 4.4E-17 132.8 15.5 265 165-437 55-372 (411)
56 1ouv_A Conserved hypothetical 99.4 3.3E-11 1.1E-15 115.0 24.1 224 160-408 8-256 (273)
57 2h6f_A Protein farnesyltransfe 99.4 6.2E-12 2.1E-16 125.7 19.0 242 161-420 100-365 (382)
58 3e4b_A ALGK; tetratricopeptide 99.4 8.8E-11 3E-15 120.8 26.7 336 67-439 13-389 (452)
59 3ro2_A PINS homolog, G-protein 99.4 8.3E-12 2.8E-16 122.3 16.8 272 126-406 8-335 (338)
60 2h6f_A Protein farnesyltransfe 99.4 8.2E-12 2.8E-16 124.9 16.4 227 193-437 97-348 (382)
61 4a1s_A PINS, partner of inscut 99.4 8E-12 2.7E-16 126.9 16.6 272 126-406 51-375 (411)
62 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 103.8 21.0 166 270-438 4-171 (184)
63 3e4b_A ALGK; tetratricopeptide 99.3 1.5E-11 5E-16 126.6 16.9 310 98-439 9-353 (452)
64 4abn_A Tetratricopeptide repea 99.3 8.1E-12 2.8E-16 129.4 14.8 192 239-434 101-318 (474)
65 2ond_A Cleavage stimulation fa 99.3 6.5E-10 2.2E-14 108.2 26.6 218 175-409 33-276 (308)
66 3vtx_A MAMA; tetratricopeptide 99.3 8.1E-11 2.8E-15 104.9 17.3 167 239-408 4-175 (184)
67 2ond_A Cleavage stimulation fa 99.3 3.5E-10 1.2E-14 110.1 23.2 214 140-368 33-267 (308)
68 3ulq_A Response regulator aspa 99.3 5.8E-11 2E-15 119.5 17.9 230 198-436 108-367 (383)
69 3nf1_A KLC 1, kinesin light ch 99.3 6.7E-12 2.3E-16 121.8 9.9 241 191-436 25-306 (311)
70 3ulq_A Response regulator aspa 99.3 8.6E-11 2.9E-15 118.2 16.9 234 164-404 109-369 (383)
71 3as5_A MAMA; tetratricopeptide 99.2 6.1E-10 2.1E-14 98.7 19.9 161 274-437 11-173 (186)
72 1hz4_A MALT regulatory protein 99.2 3E-09 1E-13 106.4 25.5 261 168-436 24-321 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.2 2E-10 6.8E-15 124.0 17.5 158 273-435 11-172 (723)
74 3nf1_A KLC 1, kinesin light ch 99.2 4.4E-11 1.5E-15 116.0 10.6 242 160-406 29-310 (311)
75 4abn_A Tetratricopeptide repea 99.2 4.5E-10 1.5E-14 116.3 18.5 211 139-368 84-318 (474)
76 3q15_A PSP28, response regulat 99.2 3.5E-10 1.2E-14 113.5 16.9 308 88-402 6-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.2 1.8E-09 6.1E-14 95.6 19.5 168 240-410 8-180 (186)
78 1hz4_A MALT regulatory protein 99.2 5.4E-09 1.8E-13 104.5 24.6 269 128-405 19-324 (373)
79 4i17_A Hypothetical protein; T 99.2 1.9E-09 6.5E-14 99.6 19.5 175 238-417 5-223 (228)
80 3q15_A PSP28, response regulat 99.2 1.9E-09 6.4E-14 108.2 20.0 302 127-436 14-364 (378)
81 4e6h_A MRNA 3'-END-processing 99.1 7E-08 2.4E-12 103.0 29.3 380 57-438 63-571 (679)
82 4e6h_A MRNA 3'-END-processing 99.1 1.2E-07 4.2E-12 101.1 30.2 362 76-439 51-535 (679)
83 4i17_A Hypothetical protein; T 99.1 5E-09 1.7E-13 96.8 17.1 166 269-437 5-209 (228)
84 3edt_B KLC 2, kinesin light ch 99.0 3.7E-09 1.3E-13 100.6 14.3 228 204-436 12-280 (283)
85 1qqe_A Vesicular transport pro 99.0 4.8E-08 1.6E-12 94.0 22.2 26 194-219 78-103 (292)
86 4gyw_A UDP-N-acetylglucosamine 99.0 4.5E-09 1.5E-13 113.5 15.8 163 237-404 6-175 (723)
87 3qky_A Outer membrane assembly 99.0 5.2E-08 1.8E-12 92.0 20.0 204 239-483 14-247 (261)
88 3qky_A Outer membrane assembly 98.9 2.7E-08 9.2E-13 94.0 16.9 164 240-424 52-248 (261)
89 1qqe_A Vesicular transport pro 98.9 1.2E-08 4.1E-13 98.3 14.6 188 247-434 44-266 (292)
90 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.2E-07 4.1E-12 87.3 20.3 184 239-440 3-216 (225)
91 2fo7_A Synthetic consensus TPR 98.9 5.2E-08 1.8E-12 80.8 16.2 126 310-437 5-132 (136)
92 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.3E-12 88.8 21.5 164 240-410 100-289 (310)
93 3edt_B KLC 2, kinesin light ch 98.9 9.1E-09 3.1E-13 97.8 11.5 228 134-368 12-278 (283)
94 3mv2_B Coatomer subunit epsilo 98.9 3.8E-07 1.3E-11 86.6 22.3 175 259-438 85-283 (310)
95 2fo7_A Synthetic consensus TPR 98.8 1.2E-07 4.1E-12 78.5 16.3 131 273-406 3-135 (136)
96 4ga2_A E3 SUMO-protein ligase 98.8 8.5E-09 2.9E-13 88.4 8.2 140 279-423 5-149 (150)
97 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4.2E-12 90.9 16.8 176 256-435 102-282 (287)
98 2pzi_A Probable serine/threoni 98.8 2.4E-08 8.4E-13 108.0 12.9 168 251-423 402-583 (681)
99 2ifu_A Gamma-SNAP; membrane fu 98.7 2.1E-07 7.3E-12 90.2 16.2 154 273-429 78-253 (307)
100 3rjv_A Putative SEL1 repeat pr 98.7 9.7E-07 3.3E-11 80.3 19.2 173 258-439 4-199 (212)
101 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.3E-12 81.9 13.8 157 242-435 8-171 (176)
102 2pzi_A Probable serine/threoni 98.7 8.2E-07 2.8E-11 96.1 20.8 182 169-369 402-603 (681)
103 2vsy_A XCC0866; transferase, g 98.7 5.2E-07 1.8E-11 95.6 18.3 160 253-415 2-169 (568)
104 2vsy_A XCC0866; transferase, g 98.7 2.9E-07 1E-11 97.5 16.4 151 284-438 2-158 (568)
105 3qou_A Protein YBBN; thioredox 98.7 4.8E-07 1.6E-11 86.7 15.9 164 190-367 114-280 (287)
106 2yhc_A BAMD, UPF0169 lipoprote 98.6 1E-06 3.5E-11 81.0 17.3 149 240-409 41-219 (225)
107 3urz_A Uncharacterized protein 98.6 3.9E-07 1.3E-11 82.7 14.1 73 199-284 60-135 (208)
108 2r5s_A Uncharacterized protein 98.6 7.2E-07 2.5E-11 78.5 15.2 125 238-367 38-169 (176)
109 4ga2_A E3 SUMO-protein ligase 98.6 7.9E-08 2.7E-12 82.3 8.4 122 312-436 3-128 (150)
110 3gyz_A Chaperone protein IPGC; 98.6 2.9E-07 9.9E-12 78.6 11.3 102 337-438 30-134 (151)
111 3urz_A Uncharacterized protein 98.6 7.9E-07 2.7E-11 80.6 14.8 160 243-407 7-190 (208)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.5E-06 8.7E-11 77.2 17.1 145 243-407 9-154 (213)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2E-06 7E-11 77.9 16.2 125 309-438 9-151 (213)
114 4gco_A Protein STI-1; structur 98.5 6.5E-07 2.2E-11 73.9 10.9 93 344-436 15-109 (126)
115 3rjv_A Putative SEL1 repeat pr 98.5 3.5E-06 1.2E-10 76.6 16.6 170 141-334 4-196 (212)
116 3dra_A Protein farnesyltransfe 98.5 4.4E-05 1.5E-09 73.1 24.4 227 172-415 47-300 (306)
117 4gco_A Protein STI-1; structur 98.5 2.5E-06 8.6E-11 70.3 13.4 114 302-417 8-124 (126)
118 1na0_A Designed protein CTPR3; 98.5 3.5E-06 1.2E-10 68.4 14.1 115 306-422 9-125 (125)
119 1a17_A Serine/threonine protei 98.5 3.9E-06 1.3E-10 72.3 15.1 127 308-436 15-145 (166)
120 2vgx_A Chaperone SYCD; alterna 98.5 7.4E-07 2.5E-11 75.9 10.1 100 338-437 16-118 (148)
121 3u3w_A Transcriptional activat 98.4 9.5E-06 3.2E-10 77.8 18.7 161 276-436 80-265 (293)
122 2c2l_A CHIP, carboxy terminus 98.4 5.8E-07 2E-11 85.8 9.8 192 239-437 3-199 (281)
123 3dra_A Protein farnesyltransfe 98.4 1.1E-05 3.7E-10 77.3 18.4 214 207-436 47-286 (306)
124 2vyi_A SGTA protein; chaperone 98.4 4.8E-06 1.6E-10 68.2 13.9 117 306-424 12-130 (131)
125 2qfc_A PLCR protein; TPR, HTH, 98.4 7.5E-06 2.6E-10 78.5 17.3 163 273-435 77-264 (293)
126 4f3v_A ESX-1 secretion system 98.4 7.5E-06 2.6E-10 76.7 16.1 196 170-368 18-234 (282)
127 2xcb_A PCRH, regulatory protei 98.4 4.9E-06 1.7E-10 70.1 13.7 96 342-437 18-115 (142)
128 2ifu_A Gamma-SNAP; membrane fu 98.4 1.5E-06 5.1E-11 84.2 11.8 171 253-435 29-222 (307)
129 1p5q_A FKBP52, FK506-binding p 98.4 1.3E-06 4.5E-11 85.7 11.3 125 308-435 149-292 (336)
130 3u3w_A Transcriptional activat 98.4 1.9E-05 6.4E-10 75.7 19.3 207 80-298 34-264 (293)
131 2lni_A Stress-induced-phosphop 98.4 4E-06 1.4E-10 69.1 12.6 116 306-423 16-133 (133)
132 4f3v_A ESX-1 secretion system 98.3 9.9E-06 3.4E-10 75.9 14.8 182 252-438 18-238 (282)
133 2qfc_A PLCR protein; TPR, HTH, 98.3 9.6E-06 3.3E-10 77.7 15.4 162 242-403 77-266 (293)
134 2e2e_A Formate-dependent nitri 98.3 2.8E-06 9.4E-11 74.6 10.6 120 317-438 21-145 (177)
135 3gw4_A Uncharacterized protein 98.3 5.9E-06 2E-10 74.0 12.7 152 251-402 3-175 (203)
136 2kck_A TPR repeat; tetratricop 98.3 5.5E-06 1.9E-10 65.8 10.9 98 342-439 6-108 (112)
137 3upv_A Heat shock protein STI1 98.3 6.6E-06 2.3E-10 67.5 11.5 96 342-437 4-101 (126)
138 1a17_A Serine/threonine protei 98.3 1E-05 3.6E-10 69.6 13.1 125 274-401 16-144 (166)
139 2uy1_A Cleavage stimulation fa 98.3 5.3E-05 1.8E-09 78.2 20.5 121 308-435 288-411 (493)
140 2fbn_A 70 kDa peptidylprolyl i 98.3 1.3E-06 4.4E-11 78.4 7.2 173 245-438 9-187 (198)
141 3gw4_A Uncharacterized protein 98.3 3.1E-05 1.1E-09 69.1 16.4 152 204-368 3-173 (203)
142 1hxi_A PEX5, peroxisome target 98.2 4E-06 1.4E-10 68.5 9.1 95 344-438 19-115 (121)
143 2vgx_A Chaperone SYCD; alterna 98.2 7.1E-06 2.4E-10 69.7 11.0 115 293-411 9-126 (148)
144 1na0_A Designed protein CTPR3; 98.2 1.3E-05 4.4E-10 65.0 12.3 97 342-438 9-107 (125)
145 3q49_B STIP1 homology and U bo 98.2 1.4E-05 4.6E-10 66.5 12.6 99 340-438 7-107 (137)
146 2uy1_A Cleavage stimulation fa 98.2 9.8E-05 3.3E-09 76.2 21.6 168 257-434 196-380 (493)
147 2lni_A Stress-induced-phosphop 98.2 1.2E-05 4.1E-10 66.2 11.8 99 340-438 14-114 (133)
148 1elw_A TPR1-domain of HOP; HOP 98.2 1.6E-05 5.4E-10 63.7 12.2 94 343-436 5-100 (118)
149 2dba_A Smooth muscle cell asso 98.2 3.6E-05 1.2E-09 64.7 14.8 112 305-419 27-144 (148)
150 3sz7_A HSC70 cochaperone (SGT) 98.2 1.3E-05 4.4E-10 69.3 11.8 95 342-436 11-107 (164)
151 1elw_A TPR1-domain of HOP; HOP 98.2 4.3E-05 1.5E-09 61.1 14.2 109 307-417 5-115 (118)
152 2dba_A Smooth muscle cell asso 98.2 2.1E-05 7.1E-10 66.1 12.7 99 340-438 26-129 (148)
153 2e2e_A Formate-dependent nitri 98.2 2E-05 6.9E-10 69.0 12.4 127 282-411 21-152 (177)
154 2c2l_A CHIP, carboxy terminus 98.1 8.3E-06 2.9E-10 77.7 10.1 187 159-368 5-196 (281)
155 3gyz_A Chaperone protein IPGC; 98.1 1.6E-05 5.3E-10 67.7 10.7 98 308-408 38-138 (151)
156 2xcb_A PCRH, regulatory protei 98.1 2E-05 6.9E-10 66.2 11.1 105 307-413 19-125 (142)
157 3upv_A Heat shock protein STI1 98.1 3E-05 1E-09 63.5 11.9 109 308-418 6-122 (126)
158 3q7a_A Farnesyltransferase alp 98.1 0.0012 4.2E-08 63.8 24.4 100 255-357 140-257 (349)
159 2vyi_A SGTA protein; chaperone 98.1 3.3E-05 1.1E-09 63.0 11.8 98 341-438 11-110 (131)
160 3sz7_A HSC70 cochaperone (SGT) 98.1 4E-05 1.4E-09 66.1 12.6 108 305-414 10-119 (164)
161 4gcn_A Protein STI-1; structur 98.1 1.6E-05 5.6E-10 65.4 9.6 94 343-436 9-111 (127)
162 4b4t_Q 26S proteasome regulato 98.1 0.00011 3.7E-09 74.5 17.5 190 247-436 11-244 (434)
163 3q7a_A Farnesyltransferase alp 98.0 0.00016 5.6E-09 70.0 17.1 214 207-436 68-330 (349)
164 2xev_A YBGF; tetratricopeptide 98.0 3E-05 1E-09 63.6 10.4 89 348-436 8-104 (129)
165 1p5q_A FKBP52, FK506-binding p 98.0 7.3E-05 2.5E-09 73.1 13.4 93 307-401 197-292 (336)
166 1wao_1 Serine/threonine protei 98.0 2.4E-05 8.1E-10 80.6 10.2 116 315-432 15-134 (477)
167 3q49_B STIP1 homology and U bo 98.0 8.8E-05 3E-09 61.4 12.1 100 305-406 8-109 (137)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.4E-05 2.2E-09 77.0 13.4 95 342-436 317-414 (457)
169 1elr_A TPR2A-domain of HOP; HO 98.0 4.3E-05 1.5E-09 62.4 9.9 96 342-437 4-108 (131)
170 2hr2_A Hypothetical protein; a 97.9 4.5E-05 1.5E-09 64.5 9.8 90 347-436 16-130 (159)
171 2kck_A TPR repeat; tetratricop 97.9 5.7E-05 1.9E-09 59.7 10.2 99 308-408 8-111 (112)
172 4b4t_Q 26S proteasome regulato 97.9 0.00069 2.4E-08 68.5 20.8 261 131-399 12-320 (434)
173 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.6E-10 65.4 5.5 82 355-436 3-89 (117)
174 2fbn_A 70 kDa peptidylprolyl i 97.9 9.4E-06 3.2E-10 72.7 5.3 150 96-260 8-176 (198)
175 2xev_A YBGF; tetratricopeptide 97.9 0.00017 6E-09 58.8 12.8 103 312-414 8-116 (129)
176 3n71_A Histone lysine methyltr 97.9 9.1E-05 3.1E-09 75.9 13.2 126 315-440 318-467 (490)
177 1elr_A TPR2A-domain of HOP; HO 97.9 0.00019 6.4E-09 58.5 12.8 106 309-417 7-121 (131)
178 3rkv_A Putative peptidylprolyl 97.9 5.7E-05 2E-09 64.9 9.8 64 374-437 63-126 (162)
179 3ro3_A PINS homolog, G-protein 97.9 0.00011 3.8E-09 62.3 11.7 93 344-436 51-157 (164)
180 1ihg_A Cyclophilin 40; ppiase 97.8 0.00012 4E-09 72.6 12.4 137 272-430 224-363 (370)
181 1wao_1 Serine/threonine protei 97.8 0.00016 5.4E-09 74.4 13.8 120 244-366 10-134 (477)
182 3ro3_A PINS homolog, G-protein 97.8 0.0001 3.5E-09 62.5 10.5 132 240-403 9-158 (164)
183 4gcn_A Protein STI-1; structur 97.8 0.00011 3.8E-09 60.3 10.1 102 240-344 8-118 (127)
184 3dss_A Geranylgeranyl transfer 97.8 0.0018 6.1E-08 62.4 19.8 191 209-416 90-317 (331)
185 1hxi_A PEX5, peroxisome target 97.8 0.00011 3.7E-09 59.8 9.6 96 311-408 22-119 (121)
186 3dss_A Geranylgeranyl transfer 97.8 0.0033 1.1E-07 60.5 20.9 180 256-438 90-305 (331)
187 2if4_A ATFKBP42; FKBP-like, al 97.7 4.7E-05 1.6E-09 74.5 7.6 148 271-438 179-329 (338)
188 3k9i_A BH0479 protein; putativ 97.7 4.3E-05 1.5E-09 61.7 6.1 91 319-410 3-97 (117)
189 1dce_A Protein (RAB geranylger 97.7 0.0022 7.4E-08 67.2 19.6 170 254-426 43-244 (567)
190 3rkv_A Putative peptidylprolyl 97.6 0.00016 5.4E-09 62.1 8.7 67 342-408 63-131 (162)
191 2hr2_A Hypothetical protein; a 97.6 0.00012 4E-09 62.0 7.4 68 344-411 59-139 (159)
192 3ma5_A Tetratricopeptide repea 97.6 0.00032 1.1E-08 54.7 9.1 65 373-437 6-70 (100)
193 2if4_A ATFKBP42; FKBP-like, al 97.6 0.0002 6.8E-09 70.1 9.5 151 239-408 178-333 (338)
194 2l6j_A TPR repeat-containing p 97.6 0.00016 5.5E-09 57.2 7.3 91 341-431 3-101 (111)
195 1na3_A Designed protein CTPR2; 97.6 0.00044 1.5E-08 52.3 9.4 81 342-422 9-91 (91)
196 2kat_A Uncharacterized protein 97.6 0.00023 8E-09 56.9 8.1 78 360-437 3-82 (115)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00057 2E-08 69.8 12.3 129 122-266 267-412 (457)
198 3n71_A Histone lysine methyltr 97.4 0.00057 1.9E-08 70.0 10.4 114 351-482 318-449 (490)
199 1ihg_A Cyclophilin 40; ppiase 97.4 0.0016 5.6E-08 64.3 12.9 118 241-362 224-361 (370)
200 1zu2_A Mitochondrial import re 97.2 0.0002 6.8E-09 60.4 4.1 85 354-438 14-121 (158)
201 3qwp_A SET and MYND domain-con 97.2 0.00063 2.2E-08 68.6 8.1 116 349-482 294-427 (429)
202 2l6j_A TPR repeat-containing p 97.2 0.0013 4.6E-08 51.6 8.6 66 373-438 3-68 (111)
203 3bee_A Putative YFRE protein; 97.2 0.0025 8.6E-08 48.7 9.3 68 372-439 4-74 (93)
204 1klx_A Cysteine rich protein B 97.1 0.006 2.1E-07 50.5 11.9 85 352-438 35-127 (138)
205 1na3_A Designed protein CTPR2; 97.0 0.0028 9.6E-08 47.6 8.1 64 374-437 9-72 (91)
206 1wy6_A Hypothetical protein ST 96.9 0.095 3.3E-06 42.0 15.6 140 282-440 18-157 (172)
207 3qww_A SET and MYND domain-con 96.9 0.003 1E-07 63.5 9.3 83 354-436 310-410 (433)
208 1klx_A Cysteine rich protein B 96.9 0.019 6.6E-07 47.4 12.9 113 285-406 9-129 (138)
209 3qww_A SET and MYND domain-con 96.8 0.0083 2.8E-07 60.3 11.9 93 318-410 310-423 (433)
210 1zu2_A Mitochondrial import re 96.8 0.0015 5.2E-08 55.0 5.3 110 320-438 16-148 (158)
211 3mkq_A Coatomer beta'-subunit; 96.8 0.12 3.9E-06 56.7 22.1 47 250-298 662-708 (814)
212 3qwp_A SET and MYND domain-con 96.8 0.014 4.9E-07 58.6 13.4 101 312-412 293-414 (429)
213 2kat_A Uncharacterized protein 96.7 0.0073 2.5E-07 47.9 8.6 63 270-333 18-80 (115)
214 3ma5_A Tetratricopeptide repea 96.6 0.0069 2.4E-07 46.8 7.5 60 239-298 6-68 (100)
215 3mkq_A Coatomer beta'-subunit; 96.5 0.13 4.3E-06 56.4 20.5 169 131-369 607-776 (814)
216 3ly7_A Transcriptional activat 96.4 0.1 3.4E-06 50.5 16.2 137 269-407 192-343 (372)
217 2kc7_A BFR218_protein; tetratr 96.4 0.0083 2.8E-07 45.9 7.2 62 350-411 8-72 (99)
218 2kc7_A BFR218_protein; tetratr 96.4 0.019 6.4E-07 43.9 9.1 85 312-407 6-94 (99)
219 1dce_A Protein (RAB geranylger 96.3 0.093 3.2E-06 54.8 16.8 172 172-360 43-244 (567)
220 1pc2_A Mitochondria fission pr 96.3 0.027 9.3E-07 46.8 9.8 65 372-436 30-99 (152)
221 3mkq_B Coatomer subunit alpha; 96.2 0.22 7.5E-06 42.5 15.0 130 247-400 12-141 (177)
222 3ly7_A Transcriptional activat 95.7 0.12 4.2E-06 49.9 12.9 62 270-333 276-337 (372)
223 3u64_A Protein TP_0956; tetrat 95.6 0.061 2.1E-06 49.9 9.7 87 358-444 179-276 (301)
224 3bee_A Putative YFRE protein; 95.4 0.093 3.2E-06 39.7 8.8 68 340-407 4-76 (93)
225 1wy6_A Hypothetical protein ST 95.4 0.84 2.9E-05 36.6 14.3 148 160-339 7-157 (172)
226 2v5f_A Prolyl 4-hydroxylase su 95.3 0.12 4.2E-06 39.9 9.6 74 341-414 4-86 (104)
227 3mkq_B Coatomer subunit alpha; 95.3 0.9 3.1E-05 38.7 15.3 130 201-369 13-142 (177)
228 3lvg_A Clathrin heavy chain 1; 94.4 0.0046 1.6E-07 61.2 -1.4 143 20-178 54-219 (624)
229 1pc2_A Mitochondria fission pr 94.1 0.24 8.2E-06 41.1 8.7 87 322-410 14-107 (152)
230 1nzn_A CGI-135 protein, fissio 93.6 0.39 1.3E-05 38.3 8.6 27 382-408 82-108 (126)
231 2v5f_A Prolyl 4-hydroxylase su 92.7 0.54 1.8E-05 36.2 8.3 65 373-437 4-75 (104)
232 1y8m_A FIS1; mitochondria, unk 91.7 4.6 0.00016 32.8 13.4 65 372-436 37-105 (144)
233 3lvg_A Clathrin heavy chain 1; 91.7 0.015 5.2E-07 57.6 -2.3 260 92-394 54-324 (624)
234 1nzn_A CGI-135 protein, fissio 90.6 2.7 9.1E-05 33.5 10.1 87 284-373 14-106 (126)
235 1qsa_A Protein (soluble lytic 89.9 21 0.0007 37.3 26.2 323 30-402 16-347 (618)
236 4h7y_A Dual specificity protei 89.9 1.1 3.9E-05 36.7 7.4 51 388-438 74-124 (161)
237 4gns_B Protein CSD3, chitin bi 89.7 4 0.00014 43.6 13.7 54 382-435 345-398 (754)
238 4h7y_A Dual specificity protei 88.6 2.5 8.4E-05 34.8 8.5 59 355-413 73-133 (161)
239 4b4t_P 26S proteasome regulato 87.6 15 0.0005 36.7 15.8 181 254-436 30-246 (445)
240 4gns_B Protein CSD3, chitin bi 87.1 4.9 0.00017 42.9 12.3 126 94-220 250-398 (754)
241 2ff4_A Probable regulatory pro 87.0 1.9 6.5E-05 42.4 8.7 68 377-444 174-246 (388)
242 3u64_A Protein TP_0956; tetrat 86.7 2.3 8E-05 39.4 8.4 90 108-199 179-283 (301)
243 1v54_E Cytochrome C oxidase po 86.6 4.3 0.00015 30.7 8.1 48 368-415 39-86 (109)
244 2uwj_G Type III export protein 86.6 8.2 0.00028 29.0 9.5 60 248-310 47-106 (115)
245 2p58_C Putative type III secre 86.4 8.8 0.0003 28.8 10.2 59 248-309 48-106 (116)
246 4b4t_P 26S proteasome regulato 85.8 25 0.00087 35.0 16.4 96 241-336 138-248 (445)
247 3o48_A Mitochondria fission 1 85.7 6.9 0.00024 31.3 9.6 47 390-436 59-106 (134)
248 1v54_E Cytochrome C oxidase po 85.1 5.4 0.00019 30.1 8.0 63 286-350 25-87 (109)
249 4fhn_B Nucleoporin NUP120; pro 83.9 28 0.00096 39.5 17.5 153 164-323 818-988 (1139)
250 3ffl_A Anaphase-promoting comp 83.8 4.7 0.00016 33.7 8.2 111 246-370 26-150 (167)
251 3txn_A 26S proteasome regulato 82.8 37 0.0013 33.1 17.7 162 241-403 20-210 (394)
252 4ady_A RPN2, 26S proteasome re 82.2 56 0.0019 35.8 17.8 20 280-299 569-588 (963)
253 4ady_A RPN2, 26S proteasome re 81.7 42 0.0014 36.7 16.6 152 245-401 495-656 (963)
254 3ffl_A Anaphase-promoting comp 80.6 17 0.00059 30.3 10.4 109 160-268 22-150 (167)
255 4fhn_B Nucleoporin NUP120; pro 80.3 22 0.00076 40.4 14.9 112 244-358 846-987 (1139)
256 2ff4_A Probable regulatory pro 78.9 11 0.00038 36.8 10.5 52 313-366 178-229 (388)
257 2y69_E Cytochrome C oxidase su 78.6 20 0.00067 28.7 9.4 49 367-415 81-129 (152)
258 2y69_E Cytochrome C oxidase su 77.3 13 0.00043 29.8 8.0 63 286-350 68-130 (152)
259 3lpz_A GET4 (YOR164C homolog); 75.7 55 0.0019 30.9 19.5 82 238-334 134-215 (336)
260 3o48_A Mitochondria fission 1 71.7 33 0.0011 27.4 9.3 30 379-408 83-112 (134)
261 2qx5_A Nucleoporin NIC96; mRNA 71.1 1.1E+02 0.0036 32.2 21.2 83 351-434 452-564 (661)
262 3ltm_A Alpha-REP4; protein eng 70.6 51 0.0017 28.3 16.6 17 305-321 156-172 (211)
263 1zbp_A Hypothetical protein VP 69.7 48 0.0016 30.2 11.1 52 281-333 7-58 (273)
264 2uwj_G Type III export protein 67.0 38 0.0013 25.4 10.2 79 172-270 20-98 (115)
265 1zbp_A Hypothetical protein VP 66.9 12 0.00041 34.1 6.6 59 350-408 5-65 (273)
266 2p58_C Putative type III secre 66.3 40 0.0014 25.4 11.3 79 172-270 21-99 (116)
267 3eiq_C Programmed cell death p 65.5 34 0.0012 32.7 9.9 65 243-307 220-289 (358)
268 2wpv_A GET4, UPF0363 protein Y 65.1 91 0.0031 29.1 19.3 134 73-217 13-158 (312)
269 1y8m_A FIS1; mitochondria, unk 64.1 57 0.0019 26.4 10.2 70 340-409 37-112 (144)
270 3esl_A Checkpoint serine/threo 63.4 66 0.0023 27.8 10.3 100 361-486 63-168 (202)
271 3mv2_A Coatomer subunit alpha; 62.3 89 0.003 29.2 11.6 60 365-438 196-257 (325)
272 1qsa_A Protein (soluble lytic 62.3 1.5E+02 0.0052 30.7 27.8 111 255-369 229-346 (618)
273 2qx5_A Nucleoporin NIC96; mRNA 60.2 1.7E+02 0.0058 30.6 15.0 80 130-220 301-383 (661)
274 4b4t_R RPN7, 26S proteasome re 60.1 25 0.00084 34.8 8.3 56 346-401 135-195 (429)
275 1wdy_A 2-5A-dependent ribonucl 59.8 50 0.0017 29.6 10.1 23 97-119 7-29 (285)
276 1wdy_A 2-5A-dependent ribonucl 57.7 1E+02 0.0036 27.4 12.2 58 247-305 152-213 (285)
277 3txn_A 26S proteasome regulato 57.3 1.4E+02 0.0049 28.9 24.9 215 197-439 103-345 (394)
278 2wpv_A GET4, UPF0363 protein Y 54.7 1.4E+02 0.0047 27.9 21.1 166 245-436 38-216 (312)
279 3kea_A K1L; tropism, ANK repea 54.2 53 0.0018 30.0 9.1 19 99-117 35-53 (285)
280 4b4t_R RPN7, 26S proteasome re 54.0 33 0.0011 33.9 8.0 96 242-337 133-239 (429)
281 4b4t_S RPN3, 26S proteasome re 52.8 1.3E+02 0.0045 30.3 11.9 62 239-300 230-299 (523)
282 3ltj_A Alpharep-4; protein eng 50.1 1.2E+02 0.0039 25.6 16.3 48 91-138 27-74 (201)
283 4a1g_A Mitotic checkpoint seri 47.4 1.2E+02 0.004 24.9 9.1 79 359-440 52-133 (152)
284 2nsz_A Programmed cell death p 46.6 42 0.0014 26.7 6.0 61 95-155 10-75 (129)
285 2zu6_B Programmed cell death p 43.3 44 0.0015 31.2 6.5 63 243-305 169-236 (307)
286 2wvi_A Mitotic checkpoint seri 42.3 1.5E+02 0.005 24.6 9.4 48 393-440 79-128 (164)
287 2l0z_A Glycoprotein G2; zinc-b 41.8 7.8 0.00027 23.3 0.7 18 559-576 11-29 (42)
288 2d2s_A Exocyst complex compone 41.6 95 0.0033 27.6 8.2 88 129-219 24-117 (235)
289 2nsz_A Programmed cell death p 41.4 98 0.0034 24.4 7.5 64 243-306 10-78 (129)
290 1n11_A Ankyrin; clathrin, BAND 39.8 2E+02 0.0069 27.8 11.4 19 248-266 151-169 (437)
291 3ltm_A Alpha-REP4; protein eng 38.9 1.8E+02 0.0061 24.6 18.7 153 239-402 32-184 (211)
292 2ion_A PDCD4, programmed cell 38.8 37 0.0013 27.9 4.7 62 94-155 11-77 (152)
293 1n11_A Ankyrin; clathrin, BAND 38.6 1.2E+02 0.0041 29.5 9.5 284 78-398 28-332 (437)
294 4gq2_M Nucleoporin NUP120; bet 36.1 4.7E+02 0.016 28.7 14.5 86 312-403 816-926 (950)
295 3bqo_A Telomeric repeat-bindin 34.7 1.9E+02 0.0067 24.7 8.3 58 358-415 94-158 (211)
296 2ion_A PDCD4, programmed cell 33.8 59 0.002 26.7 5.1 62 244-305 13-79 (152)
297 3eu9_A Huntingtin-interacting 31.2 1.2E+02 0.0042 26.0 7.5 22 98-119 45-66 (240)
298 2d2s_A Exocyst complex compone 29.9 2.1E+02 0.0072 25.3 8.5 86 349-436 25-119 (235)
299 3ltj_A Alpharep-4; protein eng 29.5 2.5E+02 0.0084 23.4 18.4 19 268-286 87-105 (201)
300 1k1a_A B-cell lymphoma 3-encod 29.3 2.4E+02 0.0081 24.2 9.1 26 132-157 15-40 (241)
301 3ygs_P Procaspase 9; apoptosis 28.5 58 0.002 24.3 3.9 64 78-143 25-88 (97)
302 4gq2_M Nucleoporin NUP120; bet 28.3 5E+02 0.017 28.5 12.9 48 308-356 899-950 (950)
303 2p1h_A APAF-1, apoptotic prote 27.1 1.6E+02 0.0055 21.4 6.2 63 76-142 24-86 (94)
304 4a1g_A Mitotic checkpoint seri 27.1 1.2E+02 0.004 24.8 5.7 49 109-157 82-135 (152)
305 1ug3_A EIF4GI, eukaryotic prot 26.8 4E+02 0.014 25.0 11.7 74 196-282 14-88 (339)
306 3mkr_B Coatomer subunit alpha; 26.1 1.8E+02 0.0061 27.1 7.4 60 365-438 187-248 (320)
307 3ygs_P Procaspase 9; apoptosis 25.1 93 0.0032 23.1 4.5 38 254-291 51-88 (97)
308 2fe3_A Peroxide operon regulat 25.1 1.9E+02 0.0065 23.2 6.8 62 296-359 12-73 (145)
309 4b4t_S RPN3, 26S proteasome re 25.0 1.3E+02 0.0045 30.3 6.7 61 306-368 231-296 (523)
310 3hra_A Ankyrin repeat family p 24.2 1.5E+02 0.0053 24.6 6.6 183 130-330 9-199 (201)
311 2r9g_A AAA ATPase, central reg 23.4 3.2E+02 0.011 23.5 7.8 65 126-191 14-86 (204)
312 2k0q_A Putative uncharacterize 23.4 17 0.00057 25.0 -0.1 22 554-575 9-30 (74)
313 2pk8_A Uncharacterized protein 23.3 27 0.00091 25.5 1.0 29 465-493 13-41 (103)
314 1k1a_A B-cell lymphoma 3-encod 23.0 2.5E+02 0.0084 24.1 7.9 54 165-218 13-68 (241)
315 3lpz_A GET4 (YOR164C homolog); 22.9 4.8E+02 0.016 24.5 28.9 115 92-217 35-160 (336)
316 1ug3_A EIF4GI, eukaryotic prot 20.8 2.8E+02 0.0095 26.1 8.0 61 95-155 14-78 (339)
317 4aez_C MAD3, mitotic spindle c 20.6 2.8E+02 0.0095 24.3 7.1 49 391-439 131-181 (223)
318 3qye_A TBC1 domain family memb 20.3 3.6E+02 0.012 25.0 8.7 76 144-219 209-288 (331)
319 3bu8_A Telomeric repeat-bindin 20.2 3.4E+02 0.012 23.6 7.3 47 322-368 88-140 (235)
320 3kea_A K1L; tropism, ANK repea 20.1 3E+02 0.01 24.7 8.0 182 247-442 35-222 (285)
321 1oai_A Nuclear RNA export fact 20.0 65 0.0022 21.5 2.3 24 136-159 33-57 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-34 Score=311.15 Aligned_cols=404 Identities=9% Similarity=-0.018 Sum_probs=344.2
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVA 95 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~ 95 (577)
....|+.++..+.+.|++++|+++|+.|... .|+..++..+..++.. ++.|.+++..+... ++++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 4456889999999999999999999999743 5666777666666554 99999999987543 7889999
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCC-------------------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKER-------------------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 156 (577)
+.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|+++|++|.+.+ |
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p 231 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--A 231 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c
Confidence 99999999999999999999965433 37899999999999999999999999999853 4
Q ss_pred Cc-chHHHH--------------------------------------HHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 037414 157 DS-YTLPFV--------------------------------------IRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197 (577)
Q Consensus 157 ~~-~t~~~l--------------------------------------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 197 (577)
+. ..+..+ +..|.+.|++++|.++++++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 32 222222 44456778888999999888765 57889999
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC---CChhHHHHHHhc------------------CCCCcchhhHHHHHHHHHhcCCH
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPT---RDLVTWTVMIGA------------------NKFLLDVILGTAVIDMYAKCGSI 256 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~i~~------------------~g~~~~~~~~~~Li~~~~~~g~~ 256 (577)
.++.+|.+.|++++|.++|+++.+ .+..+|+.++.. ...+.+..+++.++.+|.+.|++
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 999999999999999999988853 345566655544 22355788999999999999999
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 257 DSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 257 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+.+.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998863 567899999999999999999999999999864 4578899999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKD--EGLWGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
+. .+.+..+|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++.+.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 64 2346889999999999999999999999988 44777 6799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 405 PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 405 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-31 Score=284.79 Aligned_cols=360 Identities=11% Similarity=-0.027 Sum_probs=313.2
Q ss_pred CChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcC--CCCCcchHHHHHHH
Q 037414 58 VDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGM--KERDSVSWSVMVGG 132 (577)
Q Consensus 58 p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~ 132 (577)
++...|..++..+.+ ++.|.+++..+.+. .|+..++..++.+|.+.|++++|..+|+++ ..++..+|+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 567778888887665 99999999999854 568889999999999999999999999998 45689999999999
Q ss_pred HHhCCChhHHHHHHHHHHHC---------------CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHH
Q 037414 133 FSKVADFINCFETFREFIRC---------------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCA 197 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 197 (577)
|.+.|++++|+++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++.+.+ +.+...+.
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 238 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD 238 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence 99999999999999853221 223457899999999999999999999999999875 22333333
Q ss_pred H--------------------------------------HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 198 A--------------------------------------LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 198 ~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
. ++.+|.+.|++++|.++|+++.+. +++
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------------~~~ 304 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--------------EKS 304 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--------------GGC
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--------------Cch
Confidence 3 356677889999999999999762 347
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+. .+.+..++..+...|
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHH
Confidence 78889999999999999999999999863 47789999999999999999999999999865 355788999999999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ ...| +..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999753 2345789999999999999999999999998 3334 7789999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
++|+++.+..|.++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999875
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=6e-29 Score=258.01 Aligned_cols=202 Identities=14% Similarity=0.209 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC---------HH
Q 037414 141 NCFETFREFIRCGMQLDS-YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV---------ID 210 (577)
Q Consensus 141 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---------~~ 210 (577)
.+..+.+++.+.++.+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666555443 34666777777777777777777777777777777777777777766554 78
Q ss_pred HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCC
Q 037414 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQ 286 (577)
Q Consensus 211 ~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~ 286 (577)
+|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+
T Consensus 88 ~A~~lf~~M~~------------~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 88 RGFDIFKQMIV------------DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHH------------TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH------------hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC
Confidence 99999999976 57899999999999999999999999999999974 899999999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc
Q 037414 287 GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA 355 (577)
Q Consensus 287 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 355 (577)
.++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+ .+..|+..||+.++..|...
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999965 59999999999999998753
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=9.7e-29 Score=256.43 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=173.9
Q ss_pred HHHHHHhcCCCC-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCC---------hH
Q 037414 110 DAHALFNGMKER-----DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD---------IV 175 (577)
Q Consensus 110 ~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~ 175 (577)
.+..++.++.++ ....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344444555433 2235888999999999999999999999999999999999999999987654 68
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|+
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~------------~g~~Pd~~tyn~lI~~~~~~g~ 155 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA------------FGIQPRLRSYGPALFGFCRKGD 155 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------TTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------cCCCCccceehHHHHHHHHCCC
Confidence 8999999999999999999999999999999999999999999986 5788999999999999999999
Q ss_pred HHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 256 IDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 256 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
+++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..+
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999974 8999999999999999999999999999999999999999999999987643
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.7e-25 Score=226.94 Aligned_cols=343 Identities=13% Similarity=0.051 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 037414 73 IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREF 149 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 149 (577)
++.|.+.+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|+.+...|.+.|++++|++.|+++
T Consensus 15 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 15 FEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444444444432 23333444444444444444444444443321 13334444444444444444444444444
Q ss_pred HHCCCCCC-cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHH
Q 037414 150 IRCGMQLD-SYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWT 228 (577)
Q Consensus 150 ~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 228 (577)
.+. .|+ ..+|..+..++...|++++|.+.+.++++.. +.+..++..+...|...|++++|.+.|+++.+.+
T Consensus 94 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----- 165 (388)
T 1w3b_A 94 LRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ----- 165 (388)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-----
T ss_pred HHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Confidence 442 222 2234444444444444444444444444432 2233344444444444444444444444443211
Q ss_pred HHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 229 VMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 229 ~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
+.+..+++.+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|...|++..... +.+
T Consensus 166 --------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 166 --------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp --------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 11233444444444444444444444444432 123334444444444444444444444444321 112
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHhHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SV-EKDEGLWGALLG 382 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~ 382 (577)
..++..+..++...|++++|.+.|+.+++. .| +...|..+...|.+.|++++|.+.|+++ .. .++..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 334444444444444444444444444321 12 2334444444444444444444444444 11 123334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444444444444444444444444444444444443
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.3e-24 Score=217.36 Aligned_cols=371 Identities=12% Similarity=0.058 Sum_probs=316.5
Q ss_pred HHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhh----HHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037414 26 AAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKF----FISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYI 101 (577)
Q Consensus 26 ~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~----~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 101 (577)
+...+.+.|++++|++.+..+... .|+... ...+...+++.+.|...+...++.. +.+...+..+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHH
Confidence 456678899999999999887754 343332 3333444556999999999888875 7788999999999
Q ss_pred HHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc-hHHHHHHHHhcCCChHHH
Q 037414 102 YALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSY-TLPFVIRACRDRKDIVMG 177 (577)
Q Consensus 102 ~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a 177 (577)
|.+.|++++|...|+++.+ | +..+|..+...+.+.|++++|++.|+++.+. .|+.. .+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999998753 4 5567999999999999999999999999985 46544 566677778899999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHH
Q 037414 178 RLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSID 257 (577)
Q Consensus 178 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~ 257 (577)
.+.+.++++.. +.+..++..+...|.+.|++++|...|+++.+.++ .+...+..+...+...|+++
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-------------NFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHcCCHH
Confidence 99999999875 55688999999999999999999999999865332 24668899999999999999
Q ss_pred HHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 258 SAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 258 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+|...|++..+ .+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.++.+++
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998763 457889999999999999999999999999863 33567889999999999999999999999986
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHH
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYV 412 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 412 (577)
. .+.+..++..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..|.
T Consensus 300 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~ 377 (388)
T 1w3b_A 300 L--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred h--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4 3557889999999999999999999999998 4455 4668999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC
Q 037414 413 LLSNVYANAGR 423 (577)
Q Consensus 413 ~l~~~~~~~g~ 423 (577)
.+...+...|+
T Consensus 378 ~lg~~~~~~~~ 388 (388)
T 1w3b_A 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHccC
Confidence 99998877663
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=4.6e-22 Score=205.56 Aligned_cols=325 Identities=13% Similarity=0.062 Sum_probs=272.8
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVI 165 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 165 (577)
+.++..+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 56788899999999999999999999998753 367889999999999999999999999999864 23567888899
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCCCcH---HHHHHHH------------HHHHhCCCHHHHHHHHhhCCCCChhHHHHH
Q 037414 166 RACRDRKDIVMGRLIHDIVLKSGLDIDQ---FVCAALV------------DMYAKCKVIDDARQLFDQMPTRDLVTWTVM 230 (577)
Q Consensus 166 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 230 (577)
..+...|++++|...++++.+.. +.+. .++..++ ..|.+.|++++|...|+++.+.+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 173 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC------- 173 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 99999999999999999998864 3344 5665554 44999999999999999876422
Q ss_pred HhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-H
Q 037414 231 IGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-R 306 (577)
Q Consensus 231 i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 306 (577)
+.+..++..++.+|.+.|++++|..+|+++.+ .+..+|..++..|...|++++|+..|+++... .|+ .
T Consensus 174 ------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 174 ------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred ------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 23567888999999999999999999999864 56889999999999999999999999999864 444 3
Q ss_pred HHHHHH------------HHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 037414 307 ITFVSL------------LYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM- 368 (577)
Q Consensus 307 ~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m- 368 (577)
..+..+ ...|.+.|++++|..+|+.+++. .|+ ..+|..+...|.+.|++++|.+.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334333 78899999999999999999864 454 457889999999999999999999987
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH------------HHHhccC-----ChhHHHHH
Q 037414 369 SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS------------NVYANAG-----RWQDVAKI 430 (577)
Q Consensus 369 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~ 430 (577)
...| +..+|..+..+|...|++++|...++++++..|.++..+..+. ..|...| +.+++.+.
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 4445 6789999999999999999999999999999999999998888 4455556 45556666
Q ss_pred HHH
Q 037414 431 RDL 433 (577)
Q Consensus 431 ~~~ 433 (577)
+++
T Consensus 403 y~~ 405 (450)
T 2y4t_A 403 YRK 405 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.7e-20 Score=193.69 Aligned_cols=307 Identities=11% Similarity=0.006 Sum_probs=257.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
+...|..+...+.+.|++++|+.+|+++.+. .+.+..++..+..++...|++++|...++++++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 5667999999999999999999999999985 23467888999999999999999999999999986 557889999999
Q ss_pred HHHhCCCHHHHHHHHhhCCCCCh------hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChh
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDL------VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVI 272 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~------~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~ 272 (577)
+|.+.|++++|.+.|+++.+.++ ..|..+... -....+..+...|.+.|++++|...|+++.+ .+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS----DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999999876433 222222100 0011123345669999999999999999864 4678
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHH---
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCM--- 348 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l--- 348 (577)
.+..++..|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHH
Confidence 89999999999999999999999998753 446788999999999999999999999999753 444 4444444
Q ss_pred ---------HHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 349 ---------VDLLGRAGRLDEALKLIESM-SVEKD-----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 349 ---------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
...|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...++++++..|+++.+|..
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78899999999999999998 34454 3478888899999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++.+|...|++++|.+.+++..+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998643
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.7e-20 Score=195.50 Aligned_cols=349 Identities=8% Similarity=-0.089 Sum_probs=269.3
Q ss_pred cChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHH
Q 037414 71 RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFR 147 (577)
Q Consensus 71 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 147 (577)
++++.|...+..+++.. |+..++..+...|.+.|++++|...|+++.+ | +..+|..+..+|.+.|++++|+..|+
T Consensus 20 g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 97 (514)
T 2gw1_A 20 KKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97 (514)
T ss_dssp SCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33666666666666654 4666666666666666666666666665532 2 44556666666666666666666666
Q ss_pred HHHHCCCC------------------------------------------------------------------------
Q 037414 148 EFIRCGMQ------------------------------------------------------------------------ 155 (577)
Q Consensus 148 ~m~~~g~~------------------------------------------------------------------------ 155 (577)
++...+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (514)
T 2gw1_A 98 VLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF 177 (514)
T ss_dssp HHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence 66554310
Q ss_pred -----CC-cchHHHHHHHHh---cCCChHHHHHHHHHHHH-----cCC--------CCcHHHHHHHHHHHHhCCCHHHHH
Q 037414 156 -----LD-SYTLPFVIRACR---DRKDIVMGRLIHDIVLK-----SGL--------DIDQFVCAALVDMYAKCKVIDDAR 213 (577)
Q Consensus 156 -----p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~ 213 (577)
|+ ...+......+. +.|++++|...++++++ ..- +.+..++..+...|...|++++|.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 257 (514)
T 2gw1_A 178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257 (514)
T ss_dssp SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence 00 112222222222 38999999999999988 311 234678888999999999999999
Q ss_pred HHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHH
Q 037414 214 QLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKA 290 (577)
Q Consensus 214 ~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 290 (577)
..|+++.+.+ |+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 258 ~~~~~~l~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 258 EDIKKAIELF--------------PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHhhC--------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 9999875422 2256788899999999999999999998865 4667899999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 037414 291 LDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-- 368 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 368 (577)
...|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 324 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 324 GKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998864 335668888999999999999999999999764 2335678889999999999999999999887
Q ss_pred --CCCCC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 369 --SVEKD----EGLWGALLGACRI---HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 369 --~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+..++ ...|..+...+.. .|++++|...++++++..|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 3388899999999 9999999999999999999999999999999999999999999999988654
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.2e-20 Score=194.99 Aligned_cols=370 Identities=9% Similarity=-0.061 Sum_probs=300.7
Q ss_pred cchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhcc---ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037414 21 SSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCR---NIFQIRQVHAQIVAGGTLTNLIVANK 97 (577)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~---~~~~a~~~~~~~~~~g~~~~~~~~~~ 97 (577)
..+......+.+.|++++|+..|+.+... .|+..++..+-.++. +++.|.+.+..+++.. +.+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 78 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL-------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHH
Confidence 34556667789999999999999999865 367777766555544 3999999999999886 667889999
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCCC-------------------------------------------------------
Q 037414 98 LLYIYALHKALTDAHALFNGMKERD------------------------------------------------------- 122 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~~------------------------------------------------------- 122 (577)
+..+|.+.|++++|...|+++...+
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 9999999999999999998763211
Q ss_pred ---------------------------cchHHHHHHHHHh---CCChhHHHHHHHHHHH-----CCCCC--------Ccc
Q 037414 123 ---------------------------SVSWSVMVGGFSK---VADFINCFETFREFIR-----CGMQL--------DSY 159 (577)
Q Consensus 123 ---------------------------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~ 159 (577)
...|......+.. .|++++|+..|+++.+ ..-.| +..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 2222333333333 8999999999999988 32222 245
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
++..+...+...|++++|...++.+++.... ..++..+..+|...|++++|...|+++.+.+ +.+
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~ 303 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------SNN 303 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-------------TTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-------------cCC
Confidence 6777888899999999999999999988633 8889999999999999999999999876543 225
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
..++..+...|...|++++|...|++..+ .+...|..+...|...|++++|...|+++.+.. +.+..++..+...+
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEIL 382 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHH
Confidence 66888999999999999999999998753 456789999999999999999999999998753 33567788889999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGR---AGRLDEALKLIESM-SVEK-DEGLWGALLGACRIH 387 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 387 (577)
...|++++|...++.+.+...-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999999999998764332333 4488899999999 99999999999987 3334 567889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
|++++|...++++++..|.++..+..+
T Consensus 463 g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 463 EDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999999999999999999988776655
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=6.5e-18 Score=168.23 Aligned_cols=309 Identities=10% Similarity=-0.029 Sum_probs=237.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+++.. +.+..++..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4456677778888888888888888887752 2245677777777888888888888888888764 4466788888888
Q ss_pred HHhCCCHHHHHHHHhhCCCCCh---hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDL---VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSA 276 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~---~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 276 (577)
|.+.|++++|...|++..+.++ ........- +.......+..+...+...|++++|...|+++.+ .+...|..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL-VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH-HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 8888888888888888765433 111000000 0000011122336889999999999999999864 46778999
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHH---------
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYT--------- 346 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~--------- 346 (577)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998863 456788889999999999999999999999754 333 33332
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 347 ---CMVDLLGRAGRLDEALKLIESM-SVEKDEG-----LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 347 ---~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+...+.+.|++++|.+.+++. ...|+.. .+..+...+...|++++|...++++.+..|+++.++..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366789999999999999987 3344422 355577889999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhCC
Q 037414 418 YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...|++++|.+.+++..+..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999988643
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.9e-19 Score=190.25 Aligned_cols=394 Identities=9% Similarity=-0.022 Sum_probs=294.9
Q ss_pred cccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHH---HhccChHHHHHHHHHHHHcCCCCCHHHH
Q 037414 19 FFSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSL---LSCRNIFQIRQVHAQIVAGGTLTNLIVA 95 (577)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll---~a~~~~~~a~~~~~~~~~~g~~~~~~~~ 95 (577)
....+......+.+.|++++|++.|+.+... . +.+..++..+- ...++.+.|.+.+..+++.. +.+...+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 96 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL---D---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH---C---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh---C---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHH
Confidence 4455667778899999999999999998765 1 12334443333 33345999999999999886 6678899
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCcch---------
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC------GMQLDSYT--------- 160 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t--------- 160 (577)
..+...|...|++++|...|+.+. .+....+..+..+...+...+|+..++.+... ...|+...
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 999999999999999999997443 23333334455556666677888888887543 11222221
Q ss_pred ---------------------HHHHHHHHhcC--------CChHHHHHHHHHHHHcCCCCc-------HHHHHHHHHHHH
Q 037414 161 ---------------------LPFVIRACRDR--------KDIVMGRLIHDIVLKSGLDID-------QFVCAALVDMYA 204 (577)
Q Consensus 161 ---------------------~~~ll~~~~~~--------~~~~~a~~~~~~~~~~g~~~~-------~~~~~~li~~~~ 204 (577)
...+...+... +++++|..+++.+++.. +.+ ..++..+...+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHH
Confidence 11222222211 37888999999888764 223 235677778899
Q ss_pred hCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHH
Q 037414 205 KCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAY 281 (577)
Q Consensus 205 ~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 281 (577)
..|++++|...|++..+. .|+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 255 ~~~~~~~A~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINL--------------HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhc--------------CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 999999999999987642 23456788899999999999999999998864 4577899999999
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999998863 334567888999999999999999999999864 234567888999999999999999
Q ss_pred HHHHHhC----CCCC----CHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 362 LKLIESM----SVEK----DEGLWGALLGACRIH----------KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 362 ~~~~~~m----~~~p----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
.+.|+++ +..+ ....+..+...+... |++++|...++++++..|+++.++..++.+|...|+
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 9999887 1111 222344455667777 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCC
Q 037414 424 WQDVAKIRDLMTRRR 438 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (577)
+++|.+.+++..+..
T Consensus 478 ~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 478 IDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=3.2e-18 Score=170.46 Aligned_cols=311 Identities=12% Similarity=0.028 Sum_probs=254.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
|+..+..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456777888899999999999999998753 357788999999999999999999999998853 2256778888888
Q ss_pred HhcCCChHHHHHHHHHHHHcCCC---CcHHHHHHH------------HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLD---IDQFVCAAL------------VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
+...|++++|...++.+.+.. + .+...+..+ ...+...|++++|.+.|+++.+.+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------- 150 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--------- 150 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------
Confidence 999999999999999998764 3 345555555 588999999999999999876422
Q ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
+.+..++..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|...|++..+.. +.+...+
T Consensus 151 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 225 (359)
T 3ieg_A 151 ----VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCF 225 (359)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHH
Confidence 23567888899999999999999999999865 467789999999999999999999999998753 2223332
Q ss_pred H------------HHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 037414 310 V------------SLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-V----KHYTCMVDLLGRAGRLDEALKLIESM-SVE 371 (577)
Q Consensus 310 ~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 371 (577)
. .+...+...|++++|...++.+.+. .|+ . ..+..+...|.+.|++++|.+.+++. ...
T Consensus 226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2 2356688999999999999999864 233 2 33556778999999999999999988 334
Q ss_pred C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 372 K-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 372 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
| +..+|..+...+...|++++|...++++++.+|+++..+..+..++..
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 5 677999999999999999999999999999999999888887776654
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.4e-17 Score=162.17 Aligned_cols=289 Identities=12% Similarity=0.037 Sum_probs=235.7
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 037414 121 RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALV 200 (577)
Q Consensus 121 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 200 (577)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|...+.++++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366677788888888899999999999988753 2345566677778888899999999999888875 55678888899
Q ss_pred HHHHhCC-CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHH
Q 037414 201 DMYAKCK-VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSA 276 (577)
Q Consensus 201 ~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 276 (577)
..|...| ++++|.+.|++..+.++ .+...+..+...|...|++++|...|++..+ .+...+..
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 164 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-------------TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-------------TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999 89999999988765432 2466788889999999999999999998764 34677888
Q ss_pred HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC-------CCCCHHHHHHHH
Q 037414 277 MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA-------VRPDVKHYTCMV 349 (577)
Q Consensus 277 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li 349 (577)
+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 8999999999999999999998763 44567888889999999999999999998876421 133467888999
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hccCChh
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY-ANAGRWQ 425 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 425 (577)
..|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..+..++ ...|+.+
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999887 3334 5668899999999999999999999999999999999999999988 4555543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.9e-17 Score=160.72 Aligned_cols=267 Identities=13% Similarity=0.063 Sum_probs=227.5
Q ss_pred CCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhc
Q 037414 154 MQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGA 233 (577)
Q Consensus 154 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~ 233 (577)
.+.+...+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|...|+++.+.+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 45567778888888889999999999999999875 5566677788899999999999999999876532
Q ss_pred CCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 234 NKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 234 ~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
+.+..++..+...|...| ++++|...|++..+ .+...|..+...+...|++++|+..|+++.+.. +.+...+
T Consensus 87 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 162 (330)
T 3hym_B 87 ---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPM 162 (330)
T ss_dssp ---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHH
T ss_pred ---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHH
Confidence 225677888999999999 99999999999865 456789999999999999999999999998864 2345667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CCCHhHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV----------EKDEGLWG 378 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~ 378 (577)
..+...+...|++++|.+.++.+++. .+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 77889999999999999999999743 2345788899999999999999999999877 11 22456899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999877643
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=7.4e-19 Score=174.19 Aligned_cols=282 Identities=12% Similarity=0.101 Sum_probs=133.8
Q ss_pred cCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHH
Q 037414 104 LHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDI 183 (577)
Q Consensus 104 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 183 (577)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 4899999999999999999999965 25777999999999999999999998887
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Q 037414 184 VLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIF 263 (577)
Q Consensus 184 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~ 263 (577)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+.+.|...|++++|...|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------------pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING-------------------PNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ------------------------CHHHHTTTTTC-------------------C----------------CTTTHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------------------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7764 45678899999999999999999888753 24447788899999999999999999
Q ss_pred HhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHH
Q 037414 264 DRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK 343 (577)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 343 (577)
..+ ..|..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+ ...+.
T Consensus 146 ~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad 208 (449)
T 1b89_A 146 NNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHAD 208 (449)
T ss_dssp HHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHH
T ss_pred HHh-----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHh
Confidence 988 47999999999999999999999988 27889999999999999999996544432 23444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCC-----CCchhHHHH
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK--NVDLAEMAAKSLLERQP-----QNPGHYVLL 414 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p-----~~~~~~~~l 414 (577)
....++..|.+.|++++|..+++.. +.++ ....|+-|.-++.+.+ +..+.++.|..-+...| .+...|..+
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 5667889999999999999999876 5554 4557877777777653 44444554443333334 467889999
Q ss_pred HHHHhccCChhHHHHHH
Q 037414 415 SNVYANAGRWQDVAKIR 431 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~ 431 (577)
+..|.+-++|+.|..+.
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 99999999999887743
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=1.4e-17 Score=166.95 Aligned_cols=296 Identities=10% Similarity=-0.047 Sum_probs=195.2
Q ss_pred cCCChHHHHH-HHhcCCCC-------CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH
Q 037414 104 LHKALTDAHA-LFNGMKER-------DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV 175 (577)
Q Consensus 104 ~~g~~~~A~~-~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 175 (577)
-.|++++|.. .|++.... +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 66644321 23456666666777777777777777776642 224455666666666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC
Q 037414 176 MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS 255 (577)
Q Consensus 176 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~ 255 (577)
+|...++++++.. +.+..++..+..+|...|++++|.+.|+++.+.++.. ...+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~~~------ 175 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-------------AHLVTPAEEG------ 175 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-------------GGGCC-----------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-------------HHHHHHHHHH------
Confidence 7777766666654 4455666666666666666666666666554322111 1111000000
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
.. ...+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...+...|++++|...++.+++
T Consensus 176 -~~-------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 176 -AG-------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp -------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hh-------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 0000 01111223333 7889999999999988753221 477888888999999999999999999875
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN----- 407 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----- 407 (577)
. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++++..|++
T Consensus 246 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 V--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 4 2335778889999999999999999999887 3344 56789999999999999999999999999988877
Q ss_pred ------chhHHHHHHHHhccCChhHHHHHHH
Q 037414 408 ------PGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 408 ------~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
..+|..++.+|...|++++|..++.
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 7899999999999999999998875
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.74 E-value=9.5e-16 Score=161.83 Aligned_cols=338 Identities=12% Similarity=0.071 Sum_probs=256.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|++.|++..+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 356678888899999999999999998754 367789999999999999999999999998863 2356778888888
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh----------hHHHHHHhc----
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDL----------VTWTVMIGA---- 233 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~~~~~i~~---- 233 (577)
+...|++++|...++ .... .|+ .....+..+...+...+|...++++...++ ......+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999996 3322 222 223334556666667888888888755311 111111100
Q ss_pred -------CCCCcc---hhhHHHHHHHHHh--------cCCHHHHHHHHHhccC--CC--------hhhHHHHHHHHHHcC
Q 037414 234 -------NKFLLD---VILGTAVIDMYAK--------CGSIDSAREIFDRMRQ--KN--------VISWSAMIAAYGYHG 285 (577)
Q Consensus 234 -------~g~~~~---~~~~~~Li~~~~~--------~g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~g 285 (577)
.....+ ......+...+.. .|++++|..+|+++.+ |+ ..+|..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 001111 1133444443332 2588999999999876 33 225677778889999
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
++++|...|+++.+. .|+...+..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|.+.+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999985 566778888999999999999999999999764 2345788999999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 366 ESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 366 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 987 3334 456899999999999999999999999999999999999999999999999999999999987654
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=3.2e-17 Score=164.32 Aligned_cols=273 Identities=10% Similarity=-0.099 Sum_probs=170.3
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 123 SVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 123 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345555556666666666666666655532 1234455555555555555555555555555543 3334555555555
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHH
Q 037414 203 YAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYG 282 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 282 (577)
|...|++++|...|+++.+.++.. ...+..+. .....+..+...+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~-------------~~~~~~~~---------------------~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKY-------------KYLVKNKK---------------------GSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHH-------------HCC----------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhCccc-------------hHHHhhhc---------------------cchHHHHHHHHHHh
Confidence 555555555555555443211110 00000000 01223444567777
Q ss_pred HcCChHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 283 YHGQGKKALDLFPMMLSSRVL-PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 283 ~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
..|++++|...|+++.+.... ++..++..+...+...|++++|...++.+++. .+.+...|..+...|.+.|++++|
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888888775322 15677788888888888888888888888754 234577888888888889999999
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHhccCChhHH
Q 037414 362 LKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------------NPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 362 ~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A 427 (577)
.+.|++. ...| +..+|..+...+...|++++|...++++++..|. +...|..+..++...|+.+.+
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9888877 3345 4668888889999999999999999999887765 357789999999999999988
Q ss_pred HHHHHH
Q 037414 428 AKIRDL 433 (577)
Q Consensus 428 ~~~~~~ 433 (577)
.++.+.
T Consensus 347 ~~~~~~ 352 (365)
T 4eqf_A 347 QAANLG 352 (365)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 877643
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=1.6e-17 Score=164.65 Aligned_cols=312 Identities=13% Similarity=0.092 Sum_probs=149.8
Q ss_pred hhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 037414 60 PKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADF 139 (577)
Q Consensus 60 ~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 139 (577)
......+|..+++++.|.+.++.+ +++.+|..|..++.+.|++++|.+.|.+. +|...|..++.++...|++
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCH
Confidence 344566788888899999998887 33459999999999999999999999764 5777999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q 037414 140 INCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQM 219 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 219 (577)
++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999977766663 4567889999999999999999988874 467789999999999999999999999987
Q ss_pred CCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhh
Q 037414 220 PTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 220 ~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 299 (577)
. .|..|++++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+.
T Consensus 149 ~---------------------n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~- 204 (449)
T 1b89_A 149 S---------------------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV- 204 (449)
T ss_dssp T---------------------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-
T ss_pred h---------------------hHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-
Confidence 3 4678899999999999999999999 488999999999999999999976655433
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHc--CCHHHHHHHHHhC-CCCC---
Q 037414 300 SRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRA--GRLDEALKLIESM-SVEK--- 372 (577)
Q Consensus 300 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~--g~~~~A~~~~~~m-~~~p--- 372 (577)
+.|+. ...++..|.+.|.+++|..+++..+ |+.+ ....|+-|.-+|++- +++.+..+.|..- .+.|
T Consensus 205 --~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 205 --VHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp --TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred --hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH
Confidence 34544 4468899999999999999999887 4443 467778777777764 5677777777543 4333
Q ss_pred ---CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------CCCCchhHHHHHHHHh
Q 037414 373 ---DEGLWGALLGACRIHKNVDLAEMAAKSLLER------------QPQNPGHYVLLSNVYA 419 (577)
Q Consensus 373 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------~p~~~~~~~~l~~~~~ 419 (577)
+...|..+...|...++++.|....-+-... .+.+...|.-.+.-|.
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 4668999999999999999887643322111 3556677776666666
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=5.7e-16 Score=155.08 Aligned_cols=293 Identities=11% Similarity=0.015 Sum_probs=219.3
Q ss_pred hHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHH
Q 037414 73 IFQIRQ-VHAQIVAGGT-LT--NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFET 145 (577)
Q Consensus 73 ~~~a~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 145 (577)
.+.|.. .+....+... .| +...+..+...|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|++.
T Consensus 41 ~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 120 (368)
T 1fch_A 41 YDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 120 (368)
T ss_dssp -----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 555555 5554433321 11 345677889999999999999999998754 3677899999999999999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh
Q 037414 146 FREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 146 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+...+..+... ... ...
T Consensus 121 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~-------~~~--- 181 (368)
T 1fch_A 121 LRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AGG-------AGL--- 181 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC----------------------------
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hhh-------hcc---
Confidence 99999863 3367788899999999999999999999999875 2222222211110 000 000
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC
Q 037414 226 TWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K---NVISWSAMIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 226 ~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
...+..+...+ ..|++++|...|+++.+ | +...|..+...|...|++++|...|+++...
T Consensus 182 --------------~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 182 --------------GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp ------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 00111223334 88999999999999864 3 4678999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------
Q 037414 301 RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK------- 372 (577)
Q Consensus 301 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------- 372 (577)
. +.+..++..+...+...|++++|...++.+++. .+.+...+..+...|.+.|++++|.+.|++. ...|
T Consensus 247 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 247 R-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred C-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 2 345778899999999999999999999999764 2345788999999999999999999999887 1122
Q ss_pred -----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 373 -----DEGLWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 373 -----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
...+|..+..++...|+.++|..++++.++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 157999999999999999999988775443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=3.9e-16 Score=156.37 Aligned_cols=266 Identities=10% Similarity=0.031 Sum_probs=209.6
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|++.|++..+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344588889999999999999999998754 367789999999999999999999999999863 2357788999999
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHH
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQ-FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAV 246 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~L 246 (577)
+...|++++|...++++++.. |+. ..+..+. ....++..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------------------~~~~~~~~l 183 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------------------GSPGLTRRM 183 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------------
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------------------cchHHHHHH
Confidence 999999999999999998863 221 1111110 022345567
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--C---ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ--K---NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 321 (577)
...|.+.|++++|...|+++.+ | +...|..+...|...|++++|++.|+++.+.. +.+..++..+..+|...|+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 8889999999999999999864 3 57789999999999999999999999998763 4467889999999999999
Q ss_pred HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-------------CHhHHHHHHHHHHhc
Q 037414 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-------------DEGLWGALLGACRIH 387 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~ 387 (577)
+++|...|+.+++. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+..++...
T Consensus 263 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 263 SEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 99999999999864 2334788999999999999999999999987 1111 256899999999999
Q ss_pred CCHHHHHHHHHH
Q 037414 388 KNVDLAEMAAKS 399 (577)
Q Consensus 388 g~~~~a~~~~~~ 399 (577)
|+.+.+..+.++
T Consensus 341 g~~~~a~~~~~~ 352 (365)
T 4eqf_A 341 DQPELFQAANLG 352 (365)
T ss_dssp TCHHHHHHHHTT
T ss_pred CcHHHHHHHHHh
Confidence 999988877665
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=177.37 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=115.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMR-------QKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVS 311 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 311 (577)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 46689999999999999999999998764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCC-HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 312 LLYACSHTGL-VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 312 ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+|.++++.|+ .++|.++|++|.++ |+.||..+|++++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999998 57899999999765 99999999999998888776555555554433
No 24
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=9.5e-18 Score=178.87 Aligned_cols=155 Identities=13% Similarity=0.102 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHcCCChHHHHHHHhcCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchH
Q 037414 89 LTNLIVANKLLYIYALHKALTDAHALFNGMK-------ERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTL 161 (577)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 161 (577)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345689999999999999999999997753 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 162 PFVIRACRDRKDI-VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 162 ~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
+++|.++++.|+. ++|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.-+ . .-.|..
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~-~----------~~~~~~ 272 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP-P----------QLPPPV 272 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCC-C----------CCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCC-C----------CCcccc
Confidence 9999999999885 789999999999999999999999998887765555555554433221 0 011224
Q ss_pred hhHHHHHHHHHhcC
Q 037414 241 ILGTAVIDMYAKCG 254 (577)
Q Consensus 241 ~~~~~Li~~~~~~g 254 (577)
.+...|.+.|.+.+
T Consensus 273 ~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 273 NTSKLLRDVYAKDG 286 (1134)
T ss_dssp CCCTTTHHHHCCCS
T ss_pred cchHHHHHHHccCC
Confidence 44555777777655
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=1.3e-15 Score=149.55 Aligned_cols=276 Identities=10% Similarity=-0.043 Sum_probs=193.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVD 201 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 201 (577)
+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456666777777777777777777777642 2245566666666777777777777777776663 445666666777
Q ss_pred HHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHH--
Q 037414 202 MYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIA-- 279 (577)
Q Consensus 202 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~-- 279 (577)
.|...|++++|.+.|+++.+.++. +...+..+.... ++......+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-------------YEQLGSVNLQAD------------------VDIDDLNVQSEDF 146 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-------------TTTC--------------------------------------C
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-------------cHHHHHHHhHHH------------------HHHHHHHHHHHhH
Confidence 777777777777776665432211 111111110000 01111111212
Q ss_pred HHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 037414 280 AYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (577)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|+++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHH
Confidence 2666788888888888887753 336677888888888999999999999988754 2345778888999999999999
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CchhHHHHHHHHhccCChh
Q 037414 360 EALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------------NPGHYVLLSNVYANAGRWQ 425 (577)
Q Consensus 360 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~ 425 (577)
+|.+.++++ ...| +..+|..+...+...|++++|...++++++..|. ++..+..+..+|...|+++
T Consensus 224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 999999887 3334 5678999999999999999999999999999988 6889999999999999999
Q ss_pred HHHHHHHH
Q 037414 426 DVAKIRDL 433 (577)
Q Consensus 426 ~A~~~~~~ 433 (577)
+|..++++
T Consensus 304 ~A~~~~~~ 311 (327)
T 3cv0_A 304 LVELTYAQ 311 (327)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHH
Confidence 99998864
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=2.2e-15 Score=145.69 Aligned_cols=270 Identities=9% Similarity=0.020 Sum_probs=168.8
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCc--chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 037414 133 FSKVADFINCFETFREFIRCGMQLDS--YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVID 210 (577)
Q Consensus 133 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 210 (577)
....|++..|+..++.... ..|+. .....+.+++...|+++.|...++. .-+|+..++..+...|...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 3345555555555544332 22222 2333445555556666555543322 12445555566666666666666
Q ss_pred HHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHH
Q 037414 211 DARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKA 290 (577)
Q Consensus 211 ~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (577)
+|.+.++++...+. .+.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|
T Consensus 83 ~A~~~l~~ll~~~~-----------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 83 AIVAELDREMSRSV-----------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHSCC-----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccc-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 66666665432100 011344455556666666777777766666 34566777777778888888888
Q ss_pred HHHHHHhhhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 291 LDLFPMMLSSRVLPNRITF---VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 291 ~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
.+.|+++.+.. |+.... ...+..+...|++++|..+|+++++. .+.+...++.+..+|.+.|++++|++.|++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877653 443211 12233344568889999999988765 345678888888889999999999999888
Q ss_pred C-CCCC-CHhHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 368 M-SVEK-DEGLWGALLGACRIHKNVDL-AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 368 m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
. ...| +..+|..++..+...|+.++ +.++++++++.+|+++.+. +...+.+.++++..
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 6 4445 56688888888888888865 5788899999999987543 34444444444443
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=1.3e-13 Score=143.85 Aligned_cols=335 Identities=14% Similarity=0.091 Sum_probs=279.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChHHHHHHHhcCCCC-CcchHHHHHHHHHh----CCChhHH
Q 037414 72 NIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL----HKALTDAHALFNGMKER-DSVSWSVMVGGFSK----VADFINC 142 (577)
Q Consensus 72 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A 142 (577)
+.+.|...+....+.| ++..+..|-.+|.. .++.++|.+.|++..+. +...+..|...|.. .+++++|
T Consensus 58 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A 134 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAES 134 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3888999999988875 56778888899998 89999999999987654 67778888888888 8899999
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHH
Q 037414 143 FETFREFIRCGMQLDSYTLPFVIRACRD----RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----CKVIDDARQ 214 (577)
Q Consensus 143 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 214 (577)
++.|++..+.| +...+..+...|.. .++.++|.+.+++..+.| +...+..|..+|.. .++.++|.+
T Consensus 135 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 135 VKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 99999998875 55667777777766 789999999999998875 67788889999998 899999999
Q ss_pred HHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cC
Q 037414 215 LFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ-KNVISWSAMIAAYGY----HG 285 (577)
Q Consensus 215 ~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g 285 (577)
.|++..+.+ +...+..|..+|.. .++.++|..+|++..+ .+...+..+...|.. .+
T Consensus 209 ~~~~a~~~~---------------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 209 WYRKSATSG---------------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp HHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHCC---------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCC
Confidence 998865432 45567778888887 8999999999998765 566778888888888 89
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC---C
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-----GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG---R 357 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~ 357 (577)
+.++|+..|++..+.| +...+..+...|... ++.++|...++...+. + +...+..+...|.+.| +
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCccc
Confidence 9999999999998775 445666677777776 8999999999999753 3 4567777888887766 7
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHH
Q 037414 358 LDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAK 429 (577)
Q Consensus 358 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 429 (577)
+++|.++|++.-...+...+..|...+.. .++.++|...++++.+.+ ++.++..|..+|.. .+++++|..
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 89999999987323577888889999888 899999999999998875 46789999999998 899999999
Q ss_pred HHHHHhhCCC
Q 037414 430 IRDLMTRRRL 439 (577)
Q Consensus 430 ~~~~m~~~g~ 439 (577)
.+++..+.+.
T Consensus 425 ~~~~A~~~~~ 434 (490)
T 2xm6_A 425 WFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHCCC
Confidence 9999988763
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=4e-15 Score=143.80 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=198.6
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHH
Q 037414 167 ACRDRKDIVMGRLIHDIVLKSGLDIDQ--FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGT 244 (577)
Q Consensus 167 ~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~ 244 (577)
.....|+++.|....+..... .|+. .....+..+|...|+++.|...++.. + +|+...+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~-------------~~~~~a~~ 69 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S-------------APELQAVR 69 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S-------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C-------------ChhHHHHH
Confidence 344578999988887665432 3443 45566789999999999999877652 1 34667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC----C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ----K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
.+...|...|+.++|.+.++++.. | +...+..+...+.+.|++++|++.+++ +.+...+..+...+.+.
T Consensus 70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~ 143 (291)
T 3mkr_A 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKL 143 (291)
T ss_dssp HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHC
Confidence 899999999999999999998742 4 455677778999999999999999987 45777888899999999
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKH---YTCMVDLLGRAGRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
|++++|.+.++.+.+. .|+... ..+++..+...|++++|..+|+++ ....+...|+.+..++...|++++|+
T Consensus 144 g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 144 DRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp TCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999764 355321 223445555669999999999998 22347779999999999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhccCChhH-HHHHHHHHhhCC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANAGRWQD-VAKIRDLMTRRR 438 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 438 (577)
..++++++.+|+++.++..++..+...|++++ +.++++++.+..
T Consensus 221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 221 GVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999976 578888887644
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=1.6e-13 Score=144.76 Aligned_cols=367 Identities=9% Similarity=0.015 Sum_probs=226.0
Q ss_pred ChhhHHHHHHhc--cChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--CCcchHHHHHHHH-
Q 037414 59 DPKFFISSLLSC--RNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--RDSVSWSVMVGGF- 133 (577)
Q Consensus 59 ~~~~~~~ll~a~--~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~- 133 (577)
|...|..++... ++.+.|+.+++.+++.- +.+...|..++..+.+.|++++|..+|++... |++..|...+...
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 455566555542 33888999999888763 66788899999999999999999999988765 5666677766532
Q ss_pred HhCCChhHHHH----HHHHHHH-CCCCCC-cchHHHHHHHHhc---------CCChHHHHHHHHHHHHcCCCCcHHHHHH
Q 037414 134 SKVADFINCFE----TFREFIR-CGMQLD-SYTLPFVIRACRD---------RKDIVMGRLIHDIVLKSGLDIDQFVCAA 198 (577)
Q Consensus 134 ~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 198 (577)
...|+.++|.+ +|+.... .|..|+ ...|...+....+ .|+++.|..+|++.++.........|..
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~ 170 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD 170 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 34677776655 6666654 355553 3455555554433 5778888999988887311111233433
Q ss_pred HHHHH-------------HhCCCHHHHHHHHhhC------CCCChhHHHHHHhcCCCCcc--------hhhHHHHHHHHH
Q 037414 199 LVDMY-------------AKCKVIDDARQLFDQM------PTRDLVTWTVMIGANKFLLD--------VILGTAVIDMYA 251 (577)
Q Consensus 199 li~~~-------------~~~g~~~~A~~~~~~m------~~~~~~~~~~~i~~~g~~~~--------~~~~~~Li~~~~ 251 (577)
..... .+.++++.|..++.++ .++.. ..++|+ ...|...+....
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~---------~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNA---------PSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSS---------CCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccc---------ccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 32211 1234566676655541 11100 001221 234444443332
Q ss_pred hc----CCH----HHHHHHHHhccC---CChhhHHHHHHHHHH-------cCChH-------HHHHHHHHhhhCCCCCCH
Q 037414 252 KC----GSI----DSAREIFDRMRQ---KNVISWSAMIAAYGY-------HGQGK-------KALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 252 ~~----g~~----~~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~ 306 (577)
.. ++. +.|..+|++... .+...|...+..+.+ .|+.+ +|.++|++..+.-.+-+.
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 21 222 355666666653 345667777666665 57766 777777777652122345
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HhHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-EGLWGALLG 382 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~ 382 (577)
..+..++..+.+.|++++|..+|+.+++ +.|+ ...|..++..+.+.|++++|.++|++. ...|+ ...|.....
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 6667777777777888888888887764 3443 246777777777777788888877776 32332 222222221
Q ss_pred H-HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 383 A-CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 383 ~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
. +...|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..++++....+
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2 2357778888888888877777777777777777777888888888887777653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.3e-15 Score=147.70 Aligned_cols=275 Identities=10% Similarity=0.001 Sum_probs=213.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 167 (577)
+...+..+...+...|++++|..+|+++.+ .+...|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344566778889999999999999998753 367789999999999999999999999999863 3366788888899
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
+...|++++|...++.+.+.. +.+...+..+.... |+......+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~ 143 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------------------VDIDDLNVQS 143 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC----------------------------------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------------------HHHHHHHHHH
Confidence 999999999999999998864 22222222221110 0111111221
Q ss_pred H--HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCH
Q 037414 248 D--MYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322 (577)
Q Consensus 248 ~--~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 322 (577)
. .+...|++++|...++++.+ .+...+..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 2 36778999999999998764 467789999999999999999999999998763 34577888999999999999
Q ss_pred HHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHhcC
Q 037414 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-------------EGLWGALLGACRIHK 388 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g 388 (577)
++|...++.+++. .+.+...+..+...|.+.|++++|.+.+++. ...|+ ..+|..+..++...|
T Consensus 223 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 223 QEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 9999999999764 2345788899999999999999999999887 22333 568999999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 037414 389 NVDLAEMAAKSLLERQ 404 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~ 404 (577)
+.++|..++++.++..
T Consensus 301 ~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 301 RPDLVELTYAQNVEPF 316 (327)
T ss_dssp CHHHHHHHTTCCSHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999988766543
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=2.7e-13 Score=142.96 Aligned_cols=349 Identities=11% Similarity=0.118 Sum_probs=245.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 037414 80 HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKE--R-DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQL 156 (577)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 156 (577)
++..++.. +-+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444443 668889999998 4789999999999999866 3 5667999999999999999999999999985 47
Q ss_pred CcchHHHHHHH-HhcCCChHHHHH----HHHHHHHc-CCC-CcHHHHHHHHHHHHh---------CCCHHHHHHHHhhCC
Q 037414 157 DSYTLPFVIRA-CRDRKDIVMGRL----IHDIVLKS-GLD-IDQFVCAALVDMYAK---------CKVIDDARQLFDQMP 220 (577)
Q Consensus 157 ~~~t~~~ll~~-~~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 220 (577)
+...|...+.. ....|+.+.|++ +|+..++. |.. ++...|...+....+ .|+++.|.++|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 77777666653 234566666554 77776654 543 356788888887765 689999999999876
Q ss_pred CC-Ch---hHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc------cC-------CC--------hhhHH
Q 037414 221 TR-DL---VTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM------RQ-------KN--------VISWS 275 (577)
Q Consensus 221 ~~-~~---~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~------~~-------~~--------~~~~~ 275 (577)
+. .. ..|.....- ....+..+...++. .+.++++.|..++..+ .+ |+ ...|.
T Consensus 158 ~~P~~~~~~~~~~~~~~-e~~~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKY-EEGINIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHH-HHhhchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 52 10 112111000 00000000111111 1345677787776651 11 22 24566
Q ss_pred HHHHHHHHc----CCh----HHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHhh
Q 037414 276 AMIAAYGYH----GQG----KKALDLFPMMLSSRVLPNRITFVSLLYACSH-------TGLVE-------EGLRLFSSMW 333 (577)
Q Consensus 276 ~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~-------~a~~~~~~m~ 333 (577)
..+...... ++. .+|..+|++.... .+-+...|..+...+.+ .|+++ +|..+++..+
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 655443332 232 4788899998875 23456677777777765 68876 9999999997
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-H-hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 334 DDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-E-GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 334 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
+ .+.| +...|..++..+.+.|++++|.++|+++ ...|+ . ..|..++..+.+.|+.++|..+|+++++..|.+..
T Consensus 314 ~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 314 S--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp T--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred H--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 4 2445 5888999999999999999999999988 44564 3 48999999999999999999999999999888777
Q ss_pred hHHHHHHH-HhccCChhHHHHHHHHHhhCC
Q 037414 410 HYVLLSNV-YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 410 ~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g 438 (577)
.|...+.. +...|++++|.++|+...+..
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 76655544 346899999999999887643
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=4.1e-13 Score=140.13 Aligned_cols=319 Identities=12% Similarity=0.052 Sum_probs=264.9
Q ss_pred CCHHHHHHHHHHHHc----CCChHHHHHHHhcCCCC-CcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCcch
Q 037414 90 TNLIVANKLLYIYAL----HKALTDAHALFNGMKER-DSVSWSVMVGGFSK----VADFINCFETFREFIRCGMQLDSYT 160 (577)
Q Consensus 90 ~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 160 (577)
.++.....|-..|.. .++++.|...|++..+. +...+..|...|.. .+++++|++.|++..+.| +...
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 113 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA 113 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 367778888888888 89999999999876544 67788889999998 899999999999998865 5566
Q ss_pred HHHHHHHHhc----CCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 161 LPFVIRACRD----RKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----CKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 161 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
+..|-..+.. .+++++|...+++..+.| +...+..|..+|.. .++.++|.+.|++..+.+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--------- 181 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--------- 181 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------
Confidence 7777777777 789999999999998876 56778888899987 889999999999865432
Q ss_pred cCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCC
Q 037414 233 ANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ-KNVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVL 303 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 303 (577)
+...+..|..+|.. .++.++|..+|++..+ .+...+..+...|.. .+++++|..+|++..+.|
T Consensus 182 ------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 253 (490)
T 2xm6_A 182 ------NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-- 253 (490)
T ss_dssp ------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--
T ss_pred ------CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 55677788999998 8999999999998765 567788888888886 889999999999998875
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHhCCCCCCH
Q 037414 304 PNRITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA-----GRLDEALKLIESMSVEKDE 374 (577)
Q Consensus 304 p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~p~~ 374 (577)
+...+..+...|.. .++.++|...|+...+. -+...+..+...|... +++++|.+.|++.-...+.
T Consensus 254 -~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~ 328 (490)
T 2xm6_A 254 -NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA 328 (490)
T ss_dssp -CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred -CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence 44556666667766 89999999999998643 3456777788888887 8999999999987323466
Q ss_pred hHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHHHHHHHhhCC
Q 037414 375 GLWGALLGACRIHK---NVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 375 ~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 438 (577)
..+..+...+...| +.++|...++++.+. .++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 67778888887766 889999999999987 457899999999999 899999999999998876
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.7e-14 Score=149.80 Aligned_cols=342 Identities=10% Similarity=-0.010 Sum_probs=190.3
Q ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHhcCCC------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHC-----
Q 037414 90 TNLIVANKLLYIYALHKALTDAHALFNGMKE------------RDSVSWSVMVGGFSKVADFINCFETFREFIRC----- 152 (577)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 152 (577)
.....||.|...|...|++++|++.|++..+ ...++|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456778888888888888888877765421 13456788888888888888888887776542
Q ss_pred C-CCCC-cchHHHHHHHHh--cCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH---HHhCCCHHHHHHHHhhCCCCChh
Q 037414 153 G-MQLD-SYTLPFVIRACR--DRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM---YAKCKVIDDARQLFDQMPTRDLV 225 (577)
Q Consensus 153 g-~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~ 225 (577)
+ ..++ ..++.....++. ..+++++|...|++.++.. |.+...+..+..+ +...++.++|.+.|++..+.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--
Confidence 1 1111 233443333332 3456788888888887764 3345555555444 334566666666665543211
Q ss_pred HHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 226 TWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 226 ~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+.+..++..+...+.. .|++++|.+.+++..+ .+...+..+...|...|++++|+..|++..
T Consensus 206 -----------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 206 -----------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp -----------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 1123344444433333 4566777777776543 445567777777888888888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHhcc-------------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 037414 299 SSRVLPNRITFVSLLYACSHT-------------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359 (577)
Q Consensus 299 ~~g~~p~~~t~~~ll~a~~~~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (577)
+.. +-+..++..+...|... +..++|...++...+. -+.+...+..+...|...|+++
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHH
Confidence 642 22334444444443221 2245566666666532 1223455666777777888888
Q ss_pred HHHHHHHhC-CCCCCHhH----HHHHHHH-HHhcCCHHHHHHHHHHHHh------------------------cCCCCch
Q 037414 360 EALKLIESM-SVEKDEGL----WGALLGA-CRIHKNVDLAEMAAKSLLE------------------------RQPQNPG 409 (577)
Q Consensus 360 ~A~~~~~~m-~~~p~~~~----~~~ll~~-~~~~g~~~~a~~~~~~~~~------------------------~~p~~~~ 409 (577)
+|.+.|++. ...|+... +..+... ....|+.++|+..++++++ .+|+++.
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 888877765 33443321 2222221 3456777777776666554 4677888
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEE
Q 037414 410 HYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWI 448 (577)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~ 448 (577)
+|..|..+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999888765544445554
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=8e-13 Score=145.66 Aligned_cols=340 Identities=12% Similarity=0.067 Sum_probs=255.2
Q ss_pred hHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037414 25 TAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYAL 104 (577)
Q Consensus 25 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 104 (577)
.....+...|.+++|.++|+..... ......++....+++.|.++.+.+ .++.+|..+..++.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~----------~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVN----------TSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCH----------HHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 3456678889999999998886422 344566677777788888777744 457889999999999
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHH
Q 037414 105 HKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIV 184 (577)
Q Consensus 105 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 184 (577)
.|++++|...|.+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---- 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---- 1189 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----
Confidence 99999999999765 577788889999999999999999998777653 4444444588889999888854433
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHH
Q 037414 185 LKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFD 264 (577)
Q Consensus 185 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~ 264 (577)
++ .++...+..+.+.|...|++++|...|.... .|..+..+|.+.|++++|.+.++
T Consensus 1190 I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1190 IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------NFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------------HHHHHHHHHHHhCCHHHHHHHHH
Confidence 22 3455667779999999999999999998752 46778999999999999999999
Q ss_pred hccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HH
Q 037414 265 RMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VK 343 (577)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 343 (577)
+. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+ ++.+. ..
T Consensus 1246 KA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~g 1315 (1630)
T 1xi4_A 1246 KA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMG 1315 (1630)
T ss_pred Hh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhH
Confidence 87 5568899999999999999888887654 33355567788999999999999999998776 44433 45
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHhC-CCCC------CHhHHHHHHHHHHhcCCHHHHHHHHHHHHh------------
Q 037414 344 HYTCMVDLLGRA--GRLDEALKLIESM-SVEK------DEGLWGALLGACRIHKNVDLAEMAAKSLLE------------ 402 (577)
Q Consensus 344 ~~~~li~~~~~~--g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------ 402 (577)
.|+-|..+|++. +++.++.+.|.+- .+.| +...|..+...|.+.|+++.|....-+-..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 566666666654 4666777776554 4333 456899999999999999988832221111
Q ss_pred cCCCCchhHHHHHHHHhccC
Q 037414 403 RQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 403 ~~p~~~~~~~~l~~~~~~~g 422 (577)
..+.++..|.-.+.-|...+
T Consensus 1396 ~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred cccccHHHHHHHHHHHHhhC
Confidence 13567777777777776655
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.6e-13 Score=126.38 Aligned_cols=195 Identities=15% Similarity=0.055 Sum_probs=158.6
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLL 313 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 313 (577)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45777888999999999999999999998865 456789999999999999999999999998863 33566788888
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHH
Q 037414 314 YACSHT-----------GLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGAL 380 (577)
Q Consensus 314 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 380 (577)
.++... |++++|...++..++. .| +...+..+...|...|++++|...|++. ....+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 899999 9999999999999853 45 4778888999999999999999999987 222678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 381 LGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 381 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
...+...|++++|+..++++++.+|+++..+..+..++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999887653
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=5e-12 Score=139.43 Aligned_cols=354 Identities=10% Similarity=0.102 Sum_probs=235.1
Q ss_pred hhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC--hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037414 23 STTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN--IFQIRQVHAQIVAGGTLTNLIVANKLLY 100 (577)
Q Consensus 23 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~ 100 (577)
-+..+.+|...|.+.+|+++++.....++ .|...+ ..-+.++.+..+ ...+.+....+-. .+ ..-+..
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s-~fs~n~--~LqnlLi~tAIkaD~~Rv~eyI~kLd~----~d---~~eIA~ 1057 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNS-VFSEHR--NLQNLLILTAIKADRTRVMEYINRLDN----YD---APDIAN 1057 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCC-cccccH--HHHHHHHHHHHHhChhhHHHHHHHhhh----cc---HHHHHH
Confidence 35677889999999999999999875421 222222 222323333322 2222222222210 00 122333
Q ss_pred HHHcCCChHHHHHHHhcCCC-------------------------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 037414 101 IYALHKALTDAHALFNGMKE-------------------------RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQ 155 (577)
Q Consensus 101 ~~~~~g~~~~A~~~f~~m~~-------------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 155 (577)
.+...|.+++|..+|++... .+..+|..+..++...|++++|++.|.+.
T Consensus 1058 Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence 33334444444444443321 24556777778888888888888877442
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCC
Q 037414 156 LDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK 235 (577)
Q Consensus 156 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g 235 (577)
-|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++.....+ .
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~---~-------------- 1192 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN---G-------------- 1192 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh---C--------------
Confidence 356667777778888888888888887766653 333344457777888877775443321 1
Q ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 236 FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 236 ~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
++...+..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-.+
T Consensus 1193 --~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1193 --PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence 13334556888888899999999999885 478889999999999999999988762 55788888888
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--CCHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIH--KNVD 391 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--g~~~ 391 (577)
|...|++..|...... +..+...+..++..|.+.|.+++|..+++.. +.+| ....|.-|...+.+. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 8888888888876553 3345667788999999999999999999776 5555 334676666666654 4556
Q ss_pred HHHHHHHHHHhcCC-----CCchhHHHHHHHHhccCChhHHHHH
Q 037414 392 LAEMAAKSLLERQP-----QNPGHYVLLSNVYANAGRWQDVAKI 430 (577)
Q Consensus 392 ~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 430 (577)
++.+.|..-....| .+...|.-++..|.+.|+|+.|...
T Consensus 1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 66666665444434 4667899999999999999999854
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.6e-13 Score=127.97 Aligned_cols=221 Identities=12% Similarity=0.048 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K- 269 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~- 269 (577)
...+..+...|...|++++|...|++..+.+ .+..++..+..+|...|++++|...|++..+ |
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--------------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--------------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 4567888889999999999999998875432 3667888899999999999999999998764 2
Q ss_pred ---C----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 270 ---N----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 270 ---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
+ ...|..+...|...|++++|...|++.... .|+. ..+...|++++|...++.+.+. .+.+.
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~ 139 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKA 139 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchH
Confidence 1 578889999999999999999999999874 4553 3455678899999999998742 22346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
..+..+...|...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..|..+..+|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999987 3334 577899999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHhhCC
Q 037414 421 AGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g 438 (577)
.|++++|.+.+++..+..
T Consensus 220 ~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 220 VKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.8e-13 Score=126.88 Aligned_cols=239 Identities=8% Similarity=-0.081 Sum_probs=179.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
.+..+...+...|++++|...+.++++.. .+..++..+..+|...|++++|.+.|++..+.++..- ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~~ 78 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------ADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------CCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------cchHHH
Confidence 44555555666666666666666666665 5566667777777777777777777766543211000 000001
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
..++..+...|.+.|++++|...|++..+ |+ ...+...|++++|...++++.... +.+...+..+...+.
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 56788899999999999999999999875 44 345677889999999999998752 334567788888999
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
..|++++|...++.+++. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999864 2345788999999999999999999999987 3344 56789999999999999999999
Q ss_pred HHHHHHhcC------CCCchhHHHHHH
Q 037414 396 AAKSLLERQ------PQNPGHYVLLSN 416 (577)
Q Consensus 396 ~~~~~~~~~------p~~~~~~~~l~~ 416 (577)
.++++++.. |.+...+..+..
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999988 777666655543
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=1.2e-12 Score=124.73 Aligned_cols=244 Identities=9% Similarity=-0.061 Sum_probs=147.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhh
Q 037414 163 FVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVIL 242 (577)
Q Consensus 163 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~ 242 (577)
.....+...|++++|...++++++.. +.+..++..+...|...|++++|...|++..+... ........
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------~~~~~~~~ 76 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN----------ATKAKSAD 76 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC----------TTTCCHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC----------chhHHHHH
Confidence 33444455555555555555555543 22333555555555666666666665555443100 00001223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .+.+...+..+...+...
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHH
Confidence 55666666666777777766666543 34566777777777777777777777777765 223344555555233344
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhC----CCCCC------HhHHHHHHHHHHh
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR---LDEALKLIESM----SVEKD------EGLWGALLGACRI 386 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m----~~~p~------~~~~~~ll~~~~~ 386 (577)
+++++|.+.|+.+++. .+.+...+..+...+...|+ +++|...+++. ...|+ ..+|..+...+..
T Consensus 156 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 5888888888877653 12235666666777777776 66666666655 11233 2467778888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 387 HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
.|++++|...++++++.+|+++.+...+......
T Consensus 234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 234 NRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 9999999999999999999998777666555443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2.4e-13 Score=129.78 Aligned_cols=240 Identities=13% Similarity=-0.034 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHH
Q 037414 171 RKDIVMGRLIHDIVLKSGL---DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVI 247 (577)
Q Consensus 171 ~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li 247 (577)
.+++++|...++++++... +.+..++..+...|...|++++|...|++..+.+ +.+..++..+.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~la 84 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------------PDMPEVFNYLG 84 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------CCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------------CCcHHHHHHHH
Confidence 3555666666666555421 1134555666666666666666666666554321 12345566666
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 324 (577)
..|...|++++|...|++..+ .+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHH
Confidence 677777777777777766653 35667777888888888888888888888764 3444444444445566688888
Q ss_pred HHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 325 GLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD-----EGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
|...+...... .+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++
T Consensus 163 A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 163 AKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888777654 23333333 3666677778888888888776 32332 4678888899999999999999999
Q ss_pred HHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 399 SLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 399 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
++++.+|++...+ ..++...|++++|.+.+
T Consensus 240 ~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 240 LAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 9999998775544 55677788888887665
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.6e-12 Score=118.37 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=173.4
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3567888999999999999999999998764 457789999999999999999999999998763 346778888999
Q ss_pred HHhcc-CCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH
Q 037414 315 ACSHT-GLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV 390 (577)
Q Consensus 315 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 390 (577)
.+... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999976 233443 678888999999999999999999887 3334 577899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 391 DLAEMAAKSLLERQP-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 391 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
++|...++++++..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999999999 999999999999999999999999999987543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3e-12 Score=120.55 Aligned_cols=203 Identities=11% Similarity=-0.019 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---C
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---K 269 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~ 269 (577)
...+..+...|...|++++|.+.|+++.+.+ +.+..++..+...|.+.|++++|...|+++.+ .
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-------------PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4556666667777777777777776654321 12345566666777777777777777766543 3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
+...|..+...|...|++++|.++|+++...+..| +...+..+...+...|++++|.+.++.+.+. .+.+...+..+
T Consensus 104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 181 (252)
T 2ho1_A 104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEM 181 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHH
Confidence 45566666677777777777777777766533334 3345556666666677777777777766543 12235566666
Q ss_pred HHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 349 VDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
...|.+.|++++|.+.++++ ...| +...+..+...+...|+.++|.+.++++.+..|+++..
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 66666677777777666665 2233 34456666666666677777777777766666666543
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=2.3e-12 Score=121.31 Aligned_cols=197 Identities=10% Similarity=-0.030 Sum_probs=173.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788899999999999999999998864 467789999999999999999999999998763 34677888899999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 393 (577)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999975 23445 4677888899999999999999999987 3334 577899999999999999999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 394 EMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
...++++.+..|.++..+..+..+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997654
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=4.8e-12 Score=116.53 Aligned_cols=209 Identities=11% Similarity=-0.003 Sum_probs=160.3
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 037414 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-- 268 (577)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-- 268 (577)
.+..++..+...|...|++++|.+.|+++.+.+ +.+..++..+...|...|++++|...|++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-------------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 345667777777777888888887777654321 12355667777788888888888888877653
Q ss_pred -CChhhHHHHHHHHHHc-CChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHH
Q 037414 269 -KNVISWSAMIAAYGYH-GQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHY 345 (577)
Q Consensus 269 -~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 345 (577)
.+...|..+...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++.+.+. .+.+...+
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 150 (225)
T 2vq2_A 73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAF 150 (225)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHH
Confidence 4566788888888899 999999999999887433444 567778888899999999999999988754 23347788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-SVE--KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
..+...|.+.|++++|.+.+++. ... .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 151 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 151 KELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88999999999999999999887 223 3566777777888999999999999999999999987665443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=1.1e-11 Score=118.29 Aligned_cols=223 Identities=14% Similarity=0.010 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhcc
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMR 267 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~ 267 (577)
+..++..+...|...|++++|...|++..+++ +...+..|...|.. .|++++|...|++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 34455556666666666666666666554322 23345556666666 677777777776654
Q ss_pred C-CChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCC
Q 037414 268 Q-KNVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAV 338 (577)
Q Consensus 268 ~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~ 338 (577)
+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|+...+. +
T Consensus 70 ~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~- 144 (273)
T 1ouv_A 70 DLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N- 144 (273)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T-
T ss_pred HCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C-
Confidence 3 355666677777777 777777777777777664 55666667777777 77788888777777643 2
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchh
Q 037414 339 RPDVKHYTCMVDLLGR----AGRLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 339 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+...+..+...|.. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+.+| +..
T Consensus 145 --~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a 220 (273)
T 1ouv_A 145 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG 220 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH
T ss_pred --cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHH
Confidence 45566666677776 77888888877776212355667777777777 7888888888888887766 567
Q ss_pred HHHHHHHHhc----cCChhHHHHHHHHHhhCC
Q 037414 411 YVLLSNVYAN----AGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 411 ~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 438 (577)
+..+..+|.. .+++++|.+.+++..+.|
T Consensus 221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7778888887 888888888888777655
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=9.1e-13 Score=123.18 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KN 270 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~ 270 (577)
..+..+...+...|++++|...|+++.+.++ .+..++..+...|.+.|++++|...|+++.+ .+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 90 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-------------EDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90 (243)
T ss_dssp ------------------CCTTHHHHHTTCT-------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444555555555555555555433211 1233444455555555555555555555432 23
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4455555555556666666666666555432 223444555555555666666666666655432 1223445555555
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
.|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 566666666666655554 1122 344555555556666666666666666666666655544443
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=2e-12 Score=120.88 Aligned_cols=198 Identities=11% Similarity=0.104 Sum_probs=156.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
.....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3566778889999999999999999999865 456788889999999999999999999998763 346778888999
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 392 (577)
.+...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999764 2346778889999999999999999999987 3333 67788999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...++++.+..|.++..+..++.+|...|++++|.+.+++..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987644
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=1.8e-12 Score=119.33 Aligned_cols=194 Identities=12% Similarity=0.015 Sum_probs=120.2
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC
Q 037414 157 DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236 (577)
Q Consensus 157 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~ 236 (577)
+...+..+...+.+.|++++|...+++.++.. |.+...+..+..+|.+.|++++|...|++..+.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P------------ 70 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP------------ 70 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Confidence 44445555555555566666666665555543 33455555566666666666666666655443211
Q ss_pred CcchhhHHHHHHHHHhc-----------CCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC
Q 037414 237 LLDVILGTAVIDMYAKC-----------GSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRV 302 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 302 (577)
.+...+..+..+|.+. |++++|...|++..+ | +...|..+...|...|++++|+..|++..+..
T Consensus 71 -~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 71 -RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp -TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred -CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 1334455555556555 888888888888764 3 45678888888888888888888888888776
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 303 LPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 303 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+...+..+..++...|++++|...|+..++. -+.+...+..+...+.+.|++++|.+.+++.
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 67777778888888888888888888888753 2234667777788888888888888887765
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=9.8e-12 Score=118.37 Aligned_cols=123 Identities=5% Similarity=0.001 Sum_probs=58.4
Q ss_pred HHHHHHcCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc--chHHHHHHHHhcCC
Q 037414 98 LLYIYALHKALTDAHALFNGMKE---RDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS--YTLPFVIRACRDRK 172 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~ 172 (577)
....+...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+. ..|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 34444555555555555554422 13334555555555555555555555555542211111 11444444455555
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 037414 173 DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPT 221 (577)
Q Consensus 173 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 221 (577)
++++|...++..++.. +.+..++..+...|...|++++|.+.|++..+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 5555555555555443 23344455555555555555555555554443
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=3e-12 Score=129.45 Aligned_cols=269 Identities=13% Similarity=0.033 Sum_probs=191.9
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcC
Q 037414 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGAN 234 (577)
Q Consensus 159 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~ 234 (577)
..+......+...|++++|...++++++.+ +.+ ..++..+...|...|++++|...|++..+.... .
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~ 80 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART--------I 80 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh--------c
Confidence 334444555666777777777777776653 222 346677777788888888888777765321000 0
Q ss_pred CC-CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC------------------
Q 037414 235 KF-LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQ------------------ 286 (577)
Q Consensus 235 g~-~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~------------------ 286 (577)
+. +....++..+...|...|++++|...|++..+ ++ ..++..+...|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 00 11355677788888999999999988887753 22 3478888888889999
Q ss_pred --hHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHc
Q 037414 287 --GKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRA 355 (577)
Q Consensus 287 --~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~ 355 (577)
+++|...+++.... +..|. ..++..+...+...|++++|...++..++...-.++ ...+..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 89998888876542 21222 346777888889999999999999888653222222 34778888899999
Q ss_pred CCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHhcc
Q 037414 356 GRLDEALKLIESM----SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHYVLLSNVYANA 421 (577)
Q Consensus 356 g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~ 421 (577)
|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..+..+|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999998876 11122 4477888888999999999999999998764332 45788899999999
Q ss_pred CChhHHHHHHHHHhh
Q 037414 422 GRWQDVAKIRDLMTR 436 (577)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (577)
|++++|.+.+++..+
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=6.3e-12 Score=130.26 Aligned_cols=324 Identities=10% Similarity=-0.046 Sum_probs=161.3
Q ss_pred cChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCC-------C----CcchHHHHHH
Q 037414 71 RNIFQIRQVHAQIVAG--------GTLTNLIVANKLLYIYALHKALTDAHALFNGMKE-------R----DSVSWSVMVG 131 (577)
Q Consensus 71 ~~~~~a~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~ 131 (577)
++.++|.+.+...++. ..+....+|+.+...|...|++++|...|++..+ + ...+++.+..
T Consensus 65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~ 144 (472)
T 4g1t_A 65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHH
Confidence 4466666666554432 1122345667777777777777777766655421 1 2234444444
Q ss_pred HHHh--CCChhHHHHHHHHHHHCCCCCCc-chHHHHHHH---HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 037414 132 GFSK--VADFINCFETFREFIRCGMQLDS-YTLPFVIRA---CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205 (577)
Q Consensus 132 ~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 205 (577)
++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.+++.++.. +.+..++..+...+..
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHH
Confidence 4443 34567777777777663 3433 233333222 334455666666666666654 3344555544444433
Q ss_pred ----CCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHH
Q 037414 206 ----CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMI 278 (577)
Q Consensus 206 ----~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li 278 (577)
.|++++|.+.+++....+ +.+..++..+...|.+.|++++|...|++..+ | +...|..+.
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~-------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKA-------------PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp CC------CHHHHHHHHHHHHC-------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhC-------------ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 345566666666543221 12345566667777777777777777776643 2 334454444
Q ss_pred HHHHHc-------------------CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC
Q 037414 279 AAYGYH-------------------GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 279 ~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
..|... +..++|...|++..+.. +.+..++..+...+...|++++|...|++.++. .
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 444221 22445566666555432 222334555666666777777777777666532 2
Q ss_pred CCHH----HHHHHHH-HHHHcCCHHHHHHHHHhC-C------------------------CCC-CHhHHHHHHHHHHhcC
Q 037414 340 PDVK----HYTCMVD-LLGRAGRLDEALKLIESM-S------------------------VEK-DEGLWGALLGACRIHK 388 (577)
Q Consensus 340 p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~------------------------~~p-~~~~~~~ll~~~~~~g 388 (577)
|+.. .+..+.. .+...|+.++|+..|++. . ..| +..+|..+...+...|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 2221 1122221 123456666666665543 1 123 4568999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 389 NVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
++++|++.++++++.+|.+|.++..+
T Consensus 445 ~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 445 KMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HCC-----------------------
T ss_pred CHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999998887665443
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=2e-12 Score=123.27 Aligned_cols=242 Identities=10% Similarity=-0.122 Sum_probs=153.8
Q ss_pred hCCChhHHHHHHHHHHHCCCC--C-CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHH
Q 037414 135 KVADFINCFETFREFIRCGMQ--L-DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDD 211 (577)
Q Consensus 135 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 211 (577)
..|++++|++.|+++.+.... | +..++..+...+...|++++|...++++++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764211 1 34456666666777777777777777777664 4456777777777777777777
Q ss_pred HHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHH
Q 037414 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 212 A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~ 289 (577)
|.+.|++..+.+ +.+..++..+..+|.+.|++++|...|+++.+ |+...+...+..+...|++++
T Consensus 96 A~~~~~~al~~~-------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 96 AYEAFDSVLELD-------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHHHHHHHHC-------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHH
Confidence 777777665321 12455667777777778888888877777653 444444444445566678888
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHH
Q 037414 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKL 364 (577)
Q Consensus 290 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~ 364 (577)
|...+++..... +++...+ .++..+...++.++|...+....+ ..|+ ...+..+...|.+.|++++|.+.
T Consensus 163 A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 163 AKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 888887766542 3333333 355666677777778777777652 2232 46677777888888888888888
Q ss_pred HHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 037414 365 IESM-SVEKDEGLWGALLGACRIHKNVDLAEMAA 397 (577)
Q Consensus 365 ~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 397 (577)
|++. ...|+. +.....++...|++++|+..+
T Consensus 238 ~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 FKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8877 445533 222344556666777766554
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=9.1e-13 Score=133.34 Aligned_cols=295 Identities=13% Similarity=0.004 Sum_probs=215.1
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC-
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIVLKS----GLDI- 191 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~- 191 (577)
....+......+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++++++. +..|
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445566677788888888888888888875 3332 45667777788888888888888876543 2112
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC----------------
Q 037414 192 DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS---------------- 255 (577)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~---------------- 255 (577)
...++..+...|...|++++|...|++..+..... ........++..+...|...|+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-------ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 25677888889999999999999888765311110 0001124578889999999999
Q ss_pred ----HHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHh
Q 037414 256 ----IDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPN----RITFVSLLYACS 317 (577)
Q Consensus 256 ----~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~ 317 (577)
+++|...+++..+ .+ ...|..+...|...|++++|...+++..+... .++ ..++..+...+.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 9999998887643 22 34688889999999999999999998875311 112 236778888999
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKD----EGLWGALLGACR 385 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~ 385 (577)
..|++++|...++..++...-.++ ..++..+...|...|++++|.+.+++. +..++ ..++..+...+.
T Consensus 239 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 318 (406)
T 3sf4_A 239 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYT 318 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 999999999999988653211112 567788889999999999999999876 11122 447888888999
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CCchhHHHHHHHHhccCChh
Q 037414 386 IHKNVDLAEMAAKSLLERQP------QNPGHYVLLSNVYANAGRWQ 425 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~ 425 (577)
..|++++|...++++++..+ ....++..+..+|...|+..
T Consensus 319 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 319 ALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99999999999999987632 23456777888887777654
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=3.8e-12 Score=124.73 Aligned_cols=265 Identities=14% Similarity=0.036 Sum_probs=187.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
...+...|++++|...++++++.. +.+ ..++..+...|...|++++|.+.|++..+..... ...+...
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~ 83 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------GDQLGEA 83 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------cccHHHH
Confidence 344556666777776666666653 222 3556667777777777777777776653210000 0001135
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC--------------------hHHHH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQ--------------------GKKAL 291 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 291 (577)
.++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5677888888999999999988887653 22 3367788888888998 88998
Q ss_pred HHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 037414 292 DLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 292 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 362 (577)
..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888876542 21222 346777788889999999999999888643211122 347778888999999999999
Q ss_pred HHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHHHHHHHHhccCChhHHH
Q 037414 363 KLIESM----SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 363 ~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+.+++. +..++ ..++..+...+...|++++|...++++++..+.. ..++..+..+|...|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998876 11122 4477788888999999999999999998764332 347888999999999999999
Q ss_pred HHHHHHhhC
Q 037414 429 KIRDLMTRR 437 (577)
Q Consensus 429 ~~~~~m~~~ 437 (577)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988754
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=1.3e-12 Score=132.78 Aligned_cols=265 Identities=12% Similarity=0.012 Sum_probs=185.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
...+...|++++|...++++++.+ +.+. .++..+...|...|++++|...|++..+..... ...+...
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~ 126 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM-------NDRLGEA 126 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------TCHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------cCchHHH
Confidence 334555566666666666665553 2222 356666667777777777777766543210000 0001235
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhhHHHHHHHHHHcCC-----------------hHHHHHHH
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-----K----NVISWSAMIAAYGYHGQ-----------------GKKALDLF 294 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~-----------------~~~A~~l~ 294 (577)
.++..+...|...|++++|...|++..+ . ....|..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 5777888889999999999988887653 1 23467888888999999 89998888
Q ss_pred HHhhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 037414 295 PMMLSS----RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLI 365 (577)
Q Consensus 295 ~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 365 (577)
++..+. +..| ...++..+...+...|++++|...+++.++...-.++ ...+..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876542 2122 2346777888899999999999999888653211122 237788888999999999999999
Q ss_pred HhC-CC---CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchhHHHHHHHHhccCChhHHHHHH
Q 037414 366 ESM-SV---EKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------NPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 366 ~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
++. .. ..+ ..++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 876 11 111 457788888899999999999999999876433 2357889999999999999999999
Q ss_pred HHHhhC
Q 037414 432 DLMTRR 437 (577)
Q Consensus 432 ~~m~~~ 437 (577)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=3.3e-11 Score=115.04 Aligned_cols=224 Identities=13% Similarity=0.026 Sum_probs=142.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCCCChhHHHHHHhcCC
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK----CKVIDDARQLFDQMPTRDLVTWTVMIGANK 235 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g 235 (577)
++..+...+...+++++|...+++..+. .+...+..+..+|.. .|++++|...|++..+.+
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3333444444445555555555544442 223344445555555 555555555555443221
Q ss_pred CCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhhHHHHHHHHHH----cCChHHHHHHHHHhhhCCCCCCH
Q 037414 236 FLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQ-KNVISWSAMIAAYGY----HGQGKKALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 236 ~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~ 306 (577)
+...+..|..+|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +.
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 23344455555555 6666666666665543 355566777777777 778888888888777765 44
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHhHHH
Q 037414 307 ITFVSLLYACSH----TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR----AGRLDEALKLIESMSVEKDEGLWG 378 (577)
Q Consensus 307 ~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~ 378 (577)
..+..+...|.. .++.++|...|+...+. .+...+..+...|.. .+++++|.+.|++.-...+...+.
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 222 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCF 222 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 556666666666 78888888888887643 245667777788888 888888888888762122366777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 037414 379 ALLGACRI----HKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 379 ~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
.+...+.. .++.++|...++++.+.+|++.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 77788887 8899999999999999888753
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.42 E-value=6.2e-12 Score=125.71 Aligned_cols=242 Identities=9% Similarity=0.052 Sum_probs=148.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC-HHHHHHHHhhCCCCChhHHHHHHhcCCCCcc
Q 037414 161 LPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV-IDDARQLFDQMPTRDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 161 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~ 239 (577)
|..+...+...|++++|...++++++.. +.+..+|+.+..+|.+.|+ +++|...|++..+.++ .+
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-------------~~ 165 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-------------KN 165 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------------TC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------------CC
Confidence 3333344444555555555555555443 3344555555555555554 5555555555433211 13
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
..+|+.+..+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44555555556666666666666665543 355667777777777777777777777777653 22455666666666
Q ss_pred hc-cCCHHHH-----HHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHhHHHHHHHHHHh
Q 037414 317 SH-TGLVEEG-----LRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAG--RLDEALKLIESMSVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 317 ~~-~g~~~~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~ 386 (577)
.. .|..++| ...++..++ +.| +...|..+...|.+.| ++++|.+.++++...| +...+..+...+..
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 66 4544555 466776664 234 3567777777777777 5788888887774445 34577777777776
Q ss_pred cC---------CHHHHHHHHHHH-HhcCCCCchhHHHHHHHHhc
Q 037414 387 HK---------NVDLAEMAAKSL-LERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 387 ~g---------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 420 (577)
.| ..++|+.+++++ .+.+|.....|..+...+..
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 53 258899999999 88899888888877766543
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.40 E-value=8.8e-11 Score=120.82 Aligned_cols=336 Identities=11% Similarity=0.003 Sum_probs=226.7
Q ss_pred HHhccChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh---HHHHHHHhcCCCCCcchHHHHHHHHHhCC-----C
Q 037414 67 LLSCRNIFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKAL---TDAHALFNGMKERDSVSWSVMVGGFSKVA-----D 138 (577)
Q Consensus 67 l~a~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~ 138 (577)
...-++++.|.+.+....+.|. +..+..|-.+|...|+. ++|...|++..+.++..+..|...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 3334458999999999988873 33445566667778888 89999999888777778888887666665 7
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----CHHH
Q 037414 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIV---MGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDD 211 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~ 211 (577)
+++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +......|...|...+ ..++
T Consensus 90 ~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 7899999999998763 335666666665544433 3455555555555 3446677788888877 4555
Q ss_pred HHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC---CHHHHHHHHHhccC---CChhhHHHHHHHHHHc-
Q 037414 212 ARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG---SIDSAREIFDRMRQ---KNVISWSAMIAAYGYH- 284 (577)
Q Consensus 212 A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~- 284 (577)
|..+++..... ++..+..|..+|.+.| +.++|...|++..+ ++...+..+...|...
T Consensus 164 a~~~~~~a~~~----------------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 164 VERICKAALNT----------------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHHHTTT----------------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHcC----------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 66666665543 3336778899999999 99999999998764 3344446677777554
Q ss_pred ---CChHHHHHHHHHhhhCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC--
Q 037414 285 ---GQGKKALDLFPMMLSSRVLPNRITFVSLLYA-C--SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-- 356 (577)
Q Consensus 285 ---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-- 356 (577)
+++++|+..|++.. .| +...+..+... + ...++.++|.+.|+...+. | +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCC
Confidence 68999999999987 33 34445555554 3 5689999999999999753 4 5667777777777 55
Q ss_pred ---CHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChh
Q 037414 357 ---RLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQ 425 (577)
Q Consensus 357 ---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~ 425 (577)
++++|.++|++.- ..+...+..|...|.. ..+.++|...+++..+.+ ++.....|..+|.. ..+.+
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHH
T ss_pred CCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHH
Confidence 9999999999988 5677788888777766 349999999999998765 45678889998875 46899
Q ss_pred HHHHHHHHHhhCCC
Q 037414 426 DVAKIRDLMTRRRL 439 (577)
Q Consensus 426 ~A~~~~~~m~~~g~ 439 (577)
+|...++.-.+.|.
T Consensus 376 ~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 376 NAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999999888774
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=8.3e-12 Score=122.30 Aligned_cols=272 Identities=13% Similarity=0.013 Sum_probs=198.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-----cchHHHHHHHHhcCCChHHHHHHHHHHHHc----CCC-CcHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLD-----SYTLPFVIRACRDRKDIVMGRLIHDIVLKS----GLD-IDQFV 195 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~ 195 (577)
+......+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...+.+.++. +.. ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 444566778888888888888888875 343 245667777788888998888888776543 211 23567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC--------------------
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS-------------------- 255 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-------------------- 255 (577)
+..+...|...|++++|...|++..+..... ........++..+...|...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISREL-------NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 7888899999999999999988764311000 0000124477888999999999
Q ss_pred HHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhccCC
Q 037414 256 IDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPN----RITFVSLLYACSHTGL 321 (577)
Q Consensus 256 ~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~ 321 (577)
+++|...+++..+ ++ ...+..+...|...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 9999999887643 22 34688888999999999999999998875311 111 2367788889999999
Q ss_pred HHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCC
Q 037414 322 VEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-SV---EKD----EGLWGALLGACRIHKN 389 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~ 389 (577)
+++|...++...+...-.++ ...+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999988653211122 567778889999999999999999876 11 112 3477788899999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 037414 390 VDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~ 406 (577)
+++|...++++++..+.
T Consensus 319 ~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 319 HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=8.2e-12 Score=124.86 Aligned_cols=227 Identities=10% Similarity=0.113 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC-HHHHHHHHHhccC---
Q 037414 193 QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS-IDSAREIFDRMRQ--- 268 (577)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~~~~~~~--- 268 (577)
..++..+..++.+.|++++|.+.|++..+.++ .+..+|+.+..+|.+.|+ +++|...|++..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-------------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-------------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-------------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 56778888899999999999999998865332 256788899999999997 9999999999874
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTC 347 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 347 (577)
.+...|+.+...+...|++++|+..|+++++.. +-+...|..+..++...|++++|...++.+++. .| +...|+.
T Consensus 164 ~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~ 239 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQ 239 (382)
T ss_dssp TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 467889999999999999999999999999863 336778888999999999999999999999864 34 5788899
Q ss_pred HHHHHHH-cCCHHHH-----HHHHHhC-CCCC-CHhHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 348 MVDLLGR-AGRLDEA-----LKLIESM-SVEK-DEGLWGALLGACRIHK--NVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 348 li~~~~~-~g~~~~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
+..+|.+ .|..++| ++.|++. .+.| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 9999999 6665777 4667665 4456 5668998888888888 689999999998 8889999999999999
Q ss_pred HhccC---------ChhHHHHHHHHH-hhC
Q 037414 418 YANAG---------RWQDVAKIRDLM-TRR 437 (577)
Q Consensus 418 ~~~~g---------~~~~A~~~~~~m-~~~ 437 (577)
|.+.| .+++|.++++++ .+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99874 358999999998 543
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=8e-12 Score=126.88 Aligned_cols=272 Identities=11% Similarity=-0.015 Sum_probs=196.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-----chHHHHHHHHhcCCChHHHHHHHHHHHHc----C-CCCcHHH
Q 037414 126 WSVMVGGFSKVADFINCFETFREFIRCGMQLDS-----YTLPFVIRACRDRKDIVMGRLIHDIVLKS----G-LDIDQFV 195 (577)
Q Consensus 126 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~ 195 (577)
+..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...+++.++. + .+....+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344555677777777777777777764 3332 35666666777778888887777766553 1 1223567
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCC-----------------HHH
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGS-----------------IDS 258 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~-----------------~~~ 258 (577)
+..+...|...|++++|...|++..+..... ...+....++..+...|...|+ +++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQL-------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHH
Confidence 7888888999999999999888764310000 0011235578889999999999 999
Q ss_pred HHHHHHhccC-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CC----HHHHHHHHHHHhccCCHHH
Q 037414 259 AREIFDRMRQ-----K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PN----RITFVSLLYACSHTGLVEE 324 (577)
Q Consensus 259 A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~ 324 (577)
|...+++..+ . ....|..+...|...|++++|+..|++..+.... ++ ..++..+...+...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999887643 1 2347888899999999999999999998764111 12 2367788889999999999
Q ss_pred HHHHHHHhhHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCCHHH
Q 037414 325 GLRLFSSMWDDFAVRP----DVKHYTCMVDLLGRAGRLDEALKLIESM-SV---EKD----EGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 325 a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~ 392 (577)
|...++..++...-.. ....+..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 9999998865321111 1567788889999999999999999876 11 112 3477888889999999999
Q ss_pred HHHHHHHHHhcCCC
Q 037414 393 AEMAAKSLLERQPQ 406 (577)
Q Consensus 393 a~~~~~~~~~~~p~ 406 (577)
|...++++++..+.
T Consensus 362 A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 362 ALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.2e-10 Score=103.83 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=116.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHH
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMV 349 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 349 (577)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+...+...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 34556666666777777777777777666542 224556666666777777777777777766543 223355566666
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV 427 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 427 (577)
..+...+++++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6777777777777777765 2233 4557777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCC
Q 037414 428 AKIRDLMTRRR 438 (577)
Q Consensus 428 ~~~~~~m~~~g 438 (577)
.+.+++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 88888776543
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=1.5e-11 Score=126.65 Aligned_cols=310 Identities=12% Similarity=0.026 Sum_probs=213.2
Q ss_pred HHHHHHcCCChHHHHHHHhcCCCC-CcchHHHHHHHHHhCCCh---hHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCC-
Q 037414 98 LLYIYALHKALTDAHALFNGMKER-DSVSWSVMVGGFSKVADF---INCFETFREFIRCGMQLDSYTLPFVIRACRDRK- 172 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~- 172 (577)
+...+.+.|++++|.+.|.+..++ +...+..|...|...|++ ++|++.|++..+. +...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 556677889999999999887553 566677777777788888 8999999988854 4455555655444443
Q ss_pred ----ChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH---HHHHhhCCCCChhHHHHHHhcCCCCcchhhHHH
Q 037414 173 ----DIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDA---RQLFDQMPTRDLVTWTVMIGANKFLLDVILGTA 245 (577)
Q Consensus 173 ----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~ 245 (577)
+.++|...+++..+.|.+ + .+..|..+|...+..+++ .+.+....+. .+......
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---------------g~~~a~~~ 146 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---------------GYPEAGLA 146 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---------------TCTTHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---------------CCHHHHHH
Confidence 788999999999998743 3 667788888776654433 2222222111 13456677
Q ss_pred HHHHHHhcC----CHHHHHHHHHhccCCChhhHHHHHHHHHHcC---ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 246 VIDMYAKCG----SIDSAREIFDRMRQKNVISWSAMIAAYGYHG---QGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 246 Li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
|...|...+ +.+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...|..
T Consensus 147 Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 147 QVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGD 225 (452)
T ss_dssp HHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 888888887 5666777777777777779999999999999 9999999999999987 4455554556666765
Q ss_pred c----CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcC---
Q 037414 319 T----GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL-L--GRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHK--- 388 (577)
Q Consensus 319 ~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g--- 388 (577)
. ++.++|...|+... +-+...+..|... | ...+++++|.+.|++.-...+...+..|...|. .|
T Consensus 226 g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCC
Confidence 5 79999999999885 2345566666666 4 568999999999998732336777777777776 55
Q ss_pred --CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCChhHHHHHHHHHhhCCC
Q 037414 389 --NVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 389 --~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 439 (577)
+.++|...|++.. |.++..+..|..+|.. ..++++|.+.+++..+.|.
T Consensus 300 ~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp CCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999999999998 8888999999999987 4499999999999888764
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=8.1e-12 Score=129.44 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=170.2
Q ss_pred chhhHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSI-DSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLY 314 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 314 (577)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 567888899999999999 999999998864 45778999999999999999999999999985 577788889999
Q ss_pred HHhcc---------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHhC-CCCC----
Q 037414 315 ACSHT---------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRA--------GRLDEALKLIESM-SVEK---- 372 (577)
Q Consensus 315 a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m-~~~p---- 372 (577)
.+... |++++|.+.+++.++. -+.+...|..+..+|... |++++|.+.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999864 233578888999999998 9999999999988 4455
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+...|..+...+...|++++|...++++++.+|+++.++..+..++...|++++|.+.+..+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999999999999999999999999999999999999999999999998765433
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=6.5e-10 Score=108.16 Aligned_cols=218 Identities=9% Similarity=0.027 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-------hCCCH-------HHHHHHHhhCCC-CChhHHHHHHhcCCCCcc
Q 037414 175 VMGRLIHDIVLKSGLDIDQFVCAALVDMYA-------KCKVI-------DDARQLFDQMPT-RDLVTWTVMIGANKFLLD 239 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~~~~~~~~~i~~~g~~~~ 239 (577)
++|..+|+++++.. +.+..+|..++..+. +.|++ ++|..+|++..+ -+ +.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-------------p~~ 98 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-------------KKN 98 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-------------TTC
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-------------ccc
Confidence 57778888888764 567778888877775 35875 899999998765 22 124
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC-hh-hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-VI-SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
..+|..++..+.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 56888899999999999999999999875 33 33 79999999999999999999999998764 2344445433333
Q ss_pred H-hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHhHHHHHHHHHHhcC
Q 037414 316 C-SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-S---VEK--DEGLWGALLGACRIHK 388 (577)
Q Consensus 316 ~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g 388 (577)
. ...|+.++|..+|+..++.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++......|
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 23699999999999998653 235788889999999999999999999987 2 344 3558999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCch
Q 037414 389 NVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~ 409 (577)
+.+.|..+++++.+..|+++.
T Consensus 256 ~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHHHHcccccc
Confidence 999999999999999988653
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=8.1e-11 Score=104.91 Aligned_cols=167 Identities=14% Similarity=0.053 Sum_probs=144.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+..+|..|...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+.+..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567899999999999999999999999864 466789999999999999999999999988763 3355667777788
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLA 393 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 393 (577)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+...+...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998753 2345778889999999999999999999987 4445 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 037414 394 EMAAKSLLERQPQNP 408 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~ 408 (577)
+..++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.30 E-value=3.5e-10 Score=110.11 Aligned_cols=214 Identities=11% Similarity=0.097 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHCCCCCCcchHHHHHHHHh-------cCCCh-------HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 037414 140 INCFETFREFIRCGMQLDSYTLPFVIRACR-------DRKDI-------VMGRLIHDIVLKSGLDIDQFVCAALVDMYAK 205 (577)
Q Consensus 140 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 205 (577)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777641 224555666555543 35775 7888888888873124456688888888888
Q ss_pred CCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh-hHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHH
Q 037414 206 CKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI-LGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAY 281 (577)
Q Consensus 206 ~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~ 281 (577)
.|++++|.++|++..+.++ .+.. +|..++..+.+.|++++|..+|++..+ | +...|.......
T Consensus 112 ~~~~~~A~~~~~~al~~~p-------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIED-------------IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSS-------------SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccc-------------cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 8888888888888765321 1233 778888888888899999999888765 2 233343332222
Q ss_pred H-HcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC--CHHHHHHHHHHHHHcCCH
Q 037414 282 G-YHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 282 ~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~ 358 (577)
. ..|+.++|..+|++..+.. +-+...+..++..+.+.|++++|..+|+..++...+.| ....|..++..+.+.|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 2 2689999999999887752 23566778888888888999999999999876423455 356788888888889999
Q ss_pred HHHHHHHHhC
Q 037414 359 DEALKLIESM 368 (577)
Q Consensus 359 ~~A~~~~~~m 368 (577)
++|..+++++
T Consensus 258 ~~a~~~~~~a 267 (308)
T 2ond_A 258 ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988887
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=5.8e-11 Score=119.48 Aligned_cols=230 Identities=9% Similarity=-0.015 Sum_probs=171.7
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-
Q 037414 198 ALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL-DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN- 270 (577)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~- 270 (577)
.....+...|++++|...|++..+.-.. .+-++ ...++..+...|...|++++|...+++..+ ++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIF--------VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG--------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhh--------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 3566788899999999999887542000 00011 356788999999999999999999988753 22
Q ss_pred ----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhc---CC
Q 037414 271 ----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDF---AV 338 (577)
Q Consensus 271 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~ 338 (577)
..+++.+...|...|++++|+..|++..+. +-.+. ..++..+...|...|++++|...+++.++-. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 347888899999999999999999988753 11111 2477888899999999999999999887521 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC-----CCC-HhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCC
Q 037414 339 -RPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV-----EKD-EGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 339 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~ 407 (577)
+....++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|..++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 223667888999999999999999999876 11 122 2245666677888888 67777777665 222444
Q ss_pred chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+..++..|...|++++|...+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998765
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=6.7e-12 Score=121.84 Aligned_cols=241 Identities=15% Similarity=0.127 Sum_probs=167.5
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 037414 191 IDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-- 268 (577)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-- 268 (577)
.+..++..+...|...|++++|..+|+++.+.-... .+...+....++..+...|...|++++|...|++..+
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT-----SGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 346778888889999999999999988875410000 0001122456788899999999999999999988753
Q ss_pred -----C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 037414 269 -----K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS------RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSM 332 (577)
Q Consensus 269 -----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 332 (577)
+ ....|..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 2456888899999999999999999998764 2223 3456778888999999999999999998
Q ss_pred hHhc-----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhCC----------CCCCH-------hHHHHHHHHHHhcCC
Q 037414 333 WDDF-----AVRP-DVKHYTCMVDLLGRAGRLDEALKLIESMS----------VEKDE-------GLWGALLGACRIHKN 389 (577)
Q Consensus 333 ~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~~-------~~~~~ll~~~~~~g~ 389 (577)
.+.. +..| ....+..+...|.+.|++++|.+.++++- ..+.. ..+..+...+...+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 7531 1122 34678888999999999999999998761 11211 122223333445556
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66677778888777888888999999999999999999999988764
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.26 E-value=8.6e-11 Score=118.22 Aligned_cols=234 Identities=9% Similarity=-0.050 Sum_probs=177.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCC-CC
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKS----GLDI-DQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK-FL 237 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g-~~ 237 (577)
....+...|++++|...+.+..+. +-++ ...++..+...|...|++++|...+++..+-.... .+ .+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~ 181 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-------EAYNI 181 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-------STTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-------ccchH
Confidence 344567889999999999988764 1111 34678889999999999999999888764310000 00 01
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CC-C
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RV-L 303 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~ 303 (577)
....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1345788899999999999999999998763 22 247888999999999999999999998772 33 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCCHh-H
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA---VRPDVKHYTCMVDLLGRAGR---LDEALKLIESMSVEKDEG-L 376 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~-~ 376 (577)
....++..+...+...|++++|...++..++... -+.....+..+...|...|+ +++|..++++.+..|+.. .
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3456788899999999999999999998865321 11123345667788889999 999999999986555433 6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 404 (577)
+..+...+...|++++|...++++++..
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7778888999999999999999998754
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=6.1e-10 Score=98.65 Aligned_cols=161 Identities=17% Similarity=0.068 Sum_probs=103.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 353 (577)
|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555555555555555554431 223445555555666666666666666665532 1234555666666666
Q ss_pred HcCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (577)
..|++++|.+.++++ .. ..+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 677777777766665 11 2345567777777777888888888888888888877778888888888888888888888
Q ss_pred HHHhhC
Q 037414 432 DLMTRR 437 (577)
Q Consensus 432 ~~m~~~ 437 (577)
+...+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776653
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.22 E-value=3e-09 Score=106.40 Aligned_cols=261 Identities=11% Similarity=0.030 Sum_probs=168.7
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC-Ccchhh
Q 037414 168 CRDRKDIVMGRLIHDIVLKSGLDIDQ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF-LLDVIL 242 (577)
Q Consensus 168 ~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~-~~~~~~ 242 (577)
+...|++++|...+++.+......+. .+++.+...|...|++++|...+++..+.... .+. .....+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~ 95 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ--------HDVWHYALWS 95 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh--------cCcHHHHHHH
Confidence 34455666666665555544311111 14455556666777777777777664321000 000 001234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC----CCHH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ-------K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL----PNRI 307 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~ 307 (577)
++.+...|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 56677788888888888888877642 1 1234566778888899999999999887653211 1235
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HhH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT-----CMVDLLGRAGRLDEALKLIESM-SVEKD-----EGL 376 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~ 376 (577)
++..+...+...|++++|...++...+...-......+. ..+..+...|++++|...+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677777888889999999999988864321111111121 2334577899999999999887 22221 224
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----C-chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQ-----N-PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+..+...+...|++++|...++++.+..+. . ...+..+..+|...|++++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567778888999999999999988765322 1 23677788889999999999999887764
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.21 E-value=2e-10 Score=124.00 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVD 350 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 350 (577)
+|+.+...|.+.|++++|++.|++.++. .| +..++..+..+|.+.|++++|.+.|++.++ +.|+ ...|..+..
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 3444445555555555555555554442 22 234455555555555555555555555543 2332 455555666
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+|.+.|++++|++.|++. .+.| +...|..+...+...|++++|+..++++++.+|+++..|..|+.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 666666666666666555 3334 34567777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHh
Q 037414 429 KIRDLMT 435 (577)
Q Consensus 429 ~~~~~m~ 435 (577)
+.+++..
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666554
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.20 E-value=4.4e-11 Score=116.01 Aligned_cols=242 Identities=12% Similarity=0.048 Sum_probs=153.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHh
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKS-------GLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIG 232 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~ 232 (577)
++..+...+...|++++|..+++++++. ..+....++..+...|...|++++|...|++..+.... ..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~- 103 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK----TL- 103 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----Hh-
Confidence 3444444555555555555555555442 22334556777777788888888888777765421000 00
Q ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC-
Q 037414 233 ANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-------K----NVISWSAMIAAYGYHGQGKKALDLFPMMLSS- 300 (577)
Q Consensus 233 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 300 (577)
+...+....++..+...|...|++++|...|++..+ + ....|..+...|...|++++|++.|+++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 000122456788899999999999999999998753 1 2346888899999999999999999998764
Q ss_pred -----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhc------CCCCC-------HHHHHHHHHHHHHcCCHHHH
Q 037414 301 -----RVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDF------AVRPD-------VKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 301 -----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~~~~li~~~~~~g~~~~A 361 (577)
+..|+ ..++..+...+...|++++|...++.+++.. ...+. ...+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 22333 3467788899999999999999999987521 11121 12222233344445556666
Q ss_pred HHHHHhCC-CCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 362 LKLIESMS-VEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 362 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
...++... ..| +..+|..+...+...|++++|...++++++..|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 66666652 233 3458888999999999999999999999987664
No 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.20 E-value=4.5e-10 Score=116.28 Aligned_cols=211 Identities=14% Similarity=0.021 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCCh-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 139 FINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDI-VMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 139 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
++++++.+++.... .+.+...+..+...+...|++ ++|...+++.++.. +.+..++..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56677777766553 223666778888888999999 99999999998875 5568899999999999999999999999
Q ss_pred hCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhc---------CCHHHHHHHHHhccC---CChhhHHHHHHHHHHc-
Q 037414 218 QMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKC---------GSIDSAREIFDRMRQ---KNVISWSAMIAAYGYH- 284 (577)
Q Consensus 218 ~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~---------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~- 284 (577)
+..+. .|+...+..+...|... |++++|...|++..+ .+...|..+..+|...
T Consensus 162 ~al~~--------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 227 (474)
T 4abn_A 162 GALTH--------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLY 227 (474)
T ss_dssp HHHTT--------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhh--------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 87653 24556778888888888 889999998888763 4567788888888887
Q ss_pred -------CChHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHH
Q 037414 285 -------GQGKKALDLFPMMLSSRVL--PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGR 354 (577)
Q Consensus 285 -------g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 354 (577)
|++++|+..|++..+.... -+...+..+..+|...|++++|.+.|+..++. .| +...+..+...+..
T Consensus 228 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 228 FNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL---DPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 8888888888888774210 36677777888888888888888888887643 33 35567777777777
Q ss_pred cCCHHHHHHHHHhC
Q 037414 355 AGRLDEALKLIESM 368 (577)
Q Consensus 355 ~g~~~~A~~~~~~m 368 (577)
.|++++|.+.+.++
T Consensus 305 lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 305 LSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhccc
Confidence 77777777766554
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=3.5e-10 Score=113.52 Aligned_cols=308 Identities=12% Similarity=0.025 Sum_probs=191.0
Q ss_pred CCCCHHHHHHHHHHH--HcCCChHHHHHHHhcCCC------C--CcchHHHHHHH--HHhCCChhHHH---------HHH
Q 037414 88 TLTNLIVANKLLYIY--ALHKALTDAHALFNGMKE------R--DSVSWSVMVGG--FSKVADFINCF---------ETF 146 (577)
Q Consensus 88 ~~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~------~--~~~~~~~li~~--~~~~g~~~~A~---------~~~ 146 (577)
..|+..+.+.|-..| .+.+++++|.++++++.+ . ++..|-.++.. ..-.+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456777788888887 789999999988876532 1 23333333332 11112222222 555
Q ss_pred HHHHHCCCCCCc--c--hHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CC----cHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 147 REFIRCGMQLDS--Y--TLPFVIRACRDRKDIVMGRLIHDIVLKSGL-DI----DQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 147 ~~m~~~g~~p~~--~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
+.+.....+.+. . .+......+...|++++|...+.+..+... .+ ...++..+...|...|++++|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 555432111111 1 122223346788999999999999876421 12 25678889999999999999998887
Q ss_pred hCCCCChhHHHHHHhcCCCC-cchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCCh
Q 037414 218 QMPTRDLVTWTVMIGANKFL-LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQG 287 (577)
Q Consensus 218 ~m~~~~~~~~~~~i~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~ 287 (577)
+..+-.... .+.. ....+++.+...|...|++++|...|++..+ ++ ..+++.+...|...|++
T Consensus 166 ~al~~~~~~-------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 166 QALDIYQNH-------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp HHHHHHHTS-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhC-------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 754210000 0001 1245777888889999999999988887653 22 24577778888888888
Q ss_pred HHHHHHHHHhhhC----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCC--C-CHHHHHHHHHHHHHcCC---
Q 037414 288 KKALDLFPMMLSS----RVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVR--P-DVKHYTCMVDLLGRAGR--- 357 (577)
Q Consensus 288 ~~A~~l~~~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p-~~~~~~~li~~~~~~g~--- 357 (577)
++|+..|++..+. +.+....++..+...+...|+.++|...++..++...-. | ....+..+...|...|+
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888887761 122225567777778888888888888888776532211 1 13345555556666666
Q ss_pred HHHHHHHHHhCCCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 358 LDEALKLIESMSVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 358 ~~~A~~~~~~m~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
+++|...+++.+..|+.. .+..+...+...|++++|...++++.+
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777754333322 445556666677777777766666654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.8e-09 Score=95.59 Aligned_cols=168 Identities=14% Similarity=0.019 Sum_probs=144.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677889999999999999999999875 456788899999999999999999999998763 44677888889999
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
...|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999764 3446788888999999999999999999987 2233 5678999999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 037414 395 MAAKSLLERQPQNPGH 410 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~ 410 (577)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988876543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=5.4e-09 Score=104.48 Aligned_cols=269 Identities=6% Similarity=-0.116 Sum_probs=185.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCcc----hHHHHHHHHhcCCChHHHHHHHHHHHHcCC-CCc----HHHHHH
Q 037414 128 VMVGGFSKVADFINCFETFREFIRCGMQLDSY----TLPFVIRACRDRKDIVMGRLIHDIVLKSGL-DID----QFVCAA 198 (577)
Q Consensus 128 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~ 198 (577)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+.+..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667888888888888877753211221 344555667778999999888887765321 111 234667
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC---CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--C----
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF---LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K---- 269 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~---~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~---- 269 (577)
+...|...|++++|...+++..+.... .+. +....++..+...|...|++++|...+++..+ +
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINE--------QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH--------hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 888899999999999998876431100 011 11345667788999999999999999998653 1
Q ss_pred --ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHhhHhcCCCC-
Q 037414 270 --NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFV----SLLYACSHTGLVEEGLRLFSSMWDDFAVRP- 340 (577)
Q Consensus 270 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p- 340 (577)
....|..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++...+. ...+
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~ 249 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANN 249 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcc
Confidence 124677888889999999999999998865321111 11111 2334477899999999999988642 1111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037414 341 --DVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKDEG-LWGALLGACRIHKNVDLAEMAAKSLLERQP 405 (577)
Q Consensus 341 --~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 405 (577)
....+..+...+...|++++|.+.+++. +..++.. .+..+..++...|+.++|...++++.+..+
T Consensus 250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 1235667788899999999999998876 2111222 566667778999999999999999887643
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=1.9e-09 Score=99.64 Aligned_cols=175 Identities=11% Similarity=-0.034 Sum_probs=137.3
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ----KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSL 312 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 312 (577)
.|+..+..+...|.+.|++++|...|++..+ ++...|..+...+...|++++|+..|++..+. .| +...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 3567788889999999999999999998753 56777777899999999999999999999875 34 45678888
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCC-H-------HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HhHHHHH
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPD-V-------KHYTCMVDLLGRAGRLDEALKLIESM-SVEKD---EGLWGAL 380 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~l 380 (577)
...+...|++++|...++..++. .|+ . ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 89999999999999999999864 343 3 45777788889999999999999887 56676 3477777
Q ss_pred HHHHHhcCCH---------------------------HHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 381 LGACRIHKNV---------------------------DLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 381 l~~~~~~g~~---------------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
...+...|+. ++|...++++++.+|+++.+...+..+
T Consensus 160 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 7777766665 666677777777777666555544433
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=1.9e-09 Score=108.21 Aligned_cols=302 Identities=10% Similarity=-0.030 Sum_probs=200.5
Q ss_pred HHHHHHH--HhCCChhHHHHHHHHHHHC--CCCCC--cchHHHHHHHH--hcCCChHHHH---------HHHHHHHHcCC
Q 037414 127 SVMVGGF--SKVADFINCFETFREFIRC--GMQLD--SYTLPFVIRAC--RDRKDIVMGR---------LIHDIVLKSGL 189 (577)
Q Consensus 127 ~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~~~--~~~~~~~~a~---------~~~~~~~~~g~ 189 (577)
+.|-..| ...+++++|.+++++..+. .++.| ...|-.++..- .-.+.+.... ..++.+.....
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 3344444 7789999999999988663 23223 22333443321 1111111122 55555433221
Q ss_pred CCc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 037414 190 DID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDR 265 (577)
Q Consensus 190 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~ 265 (577)
+.+ ...+......+...|++++|...|++..+.-... ...+....++..+...|...|+++.|...+++
T Consensus 94 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 94 KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-------SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-------CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 111 1123344556788999999999998875421000 00011356788899999999999999999887
Q ss_pred ccC-----CC-----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 037414 266 MRQ-----KN-----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLP-NRITFVSLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 266 ~~~-----~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 330 (577)
..+ ++ ..+++.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653 22 346888999999999999999999988753 2111 13467788889999999999999999
Q ss_pred HhhHhc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CC--CCC-HhHHHHHHHHHHhcCC---HHHHHHHH
Q 037414 331 SMWDDF---AVRPDVKHYTCMVDLLGRAGRLDEALKLIESM----SV--EKD-EGLWGALLGACRIHKN---VDLAEMAA 397 (577)
Q Consensus 331 ~m~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~ 397 (577)
+.++-. +.+....++..+...|.+.|++++|.+.+++. .. .|. ...+..+...+...++ .++|...+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 887511 22223677888889999999999999999886 11 222 2245555556677777 67777776
Q ss_pred HHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 398 KSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 398 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++. ...|.....+..++..|...|++++|.+.+++..+
T Consensus 327 ~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 652 12234456778899999999999999999987754
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=7e-08 Score=102.97 Aligned_cols=380 Identities=9% Similarity=0.020 Sum_probs=220.7
Q ss_pred CCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hHHHHHHHhcCCC-----CCcch
Q 037414 57 SVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVANKLLYIYALHKA---LTDAHALFNGMKE-----RDSVS 125 (577)
Q Consensus 57 ~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~-----~~~~~ 125 (577)
+-|..+|..++..+.. +..++.+++.+++. ++.+...|..-+..-.+.|+ ++.+..+|++... +++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3466677777776643 88899999998877 47788889988888888888 9999999998654 56667
Q ss_pred HHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCCc-chHHHHHHHHh---------cCCChHHHHHHHHHHH
Q 037414 126 WSVMVGGFSKVADF--------INCFETFREFIR-CGM-QLDS-YTLPFVIRACR---------DRKDIVMGRLIHDIVL 185 (577)
Q Consensus 126 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 185 (577)
|..-+.-..+.++. +.+.++|+..+. .|. .|+. ..|...+.... ..++++.++.+|.+++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88777655554443 334477776554 466 5644 45555554432 1234677888888887
Q ss_pred HcCCCCcHHHHHHHHHHHHh-------------CCCHHHHHHHHhhC-------CC---CC-------------------
Q 037414 186 KSGLDIDQFVCAALVDMYAK-------------CKVIDDARQLFDQM-------PT---RD------------------- 223 (577)
Q Consensus 186 ~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m-------~~---~~------------------- 223 (577)
......-..+|......--. ..+++.|...+.++ .. +.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53111112333222111100 11233344444331 10 00
Q ss_pred hhHHHHHHhc-------------------------CCCCcchhhHHHHHHHHHhcCCHHHHH-HHHHhccC--C-ChhhH
Q 037414 224 LVTWTVMIGA-------------------------NKFLLDVILGTAVIDMYAKCGSIDSAR-EIFDRMRQ--K-NVISW 274 (577)
Q Consensus 224 ~~~~~~~i~~-------------------------~g~~~~~~~~~~Li~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~ 274 (577)
...|...+.- .-++-+..+|-..+..+...|+.++|. .+|++... | +...|
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw 381 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence 0111111110 112223344444555556667777775 77776653 3 34456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSSRV---------LPN------------RITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|.++.|..+|...+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6667777777778888877777765310 131 2245666666666777778888887776
Q ss_pred HhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C
Q 037414 334 DDFAVRPDVKHYTCMVDLLGRA-GRLDEALKLIESM--SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ---N 407 (577)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~ 407 (577)
+..+ .+....|...+..-.+. ++.+.|.++|+.. ....+...|...+......|+.+.|..+|+++++..|+ .
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 4311 11223333333222333 3477777777766 21224556667777677777888888888887777663 3
Q ss_pred chhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 408 PGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
...|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566667777777788888888877777654
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.06 E-value=1.2e-07 Score=101.11 Aligned_cols=362 Identities=10% Similarity=0.044 Sum_probs=247.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCC---hhHHHHHHHHH
Q 037414 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVAD---FINCFETFREF 149 (577)
Q Consensus 76 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~---~~~A~~~~~~m 149 (577)
-...++..++.. +.|...|..++..+.+.+.++.++.+|+++... ....|..-+..-.+.+. ++.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334455555555 679999999999999999999999999988652 55678888888888888 99999999999
Q ss_pred HHCC-CCCCcchHHHHHHHHhcCCCh--------HHHHHHHHHHHH-cCC-CCc-HHHHHHHHHHHHh---------CCC
Q 037414 150 IRCG-MQLDSYTLPFVIRACRDRKDI--------VMGRLIHDIVLK-SGL-DID-QFVCAALVDMYAK---------CKV 208 (577)
Q Consensus 150 ~~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~ 208 (577)
+... ..|+...|..-+....+.++. +.+.++|+..+. .|. .++ ...|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 8863 237777777776654444433 345578887665 365 454 5788888876543 345
Q ss_pred HHHHHHHHhhCCCCCh----hHHH---HHHhc-------------------------------CCC----Cc--------
Q 037414 209 IDDARQLFDQMPTRDL----VTWT---VMIGA-------------------------------NKF----LL-------- 238 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~----~~~~---~~i~~-------------------------------~g~----~~-------- 238 (577)
++.+.++|++...-.. ..|. .+... .++ +.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7889999988764211 1221 11000 011 00
Q ss_pred -----------chhhHHHHHHHHHhcC-------CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHH-HHHHH
Q 037414 239 -----------DVILGTAVIDMYAKCG-------SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKAL-DLFPM 296 (577)
Q Consensus 239 -----------~~~~~~~Li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~ 296 (577)
....|...+..--..+ ..+.+..+|++... .+...|-..+.-+...|+.++|. ++|++
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0123444443322222 12234455666543 34566777777778889999997 99999
Q ss_pred hhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcC--------CCCC------------HHHHHHHHHHHHHcC
Q 037414 297 MLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFA--------VRPD------------VKHYTCMVDLLGRAG 356 (577)
Q Consensus 297 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~~~~g 356 (577)
.... .+.+...+...+......|++++|.++|+.+++... -.|+ ...|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 8864 445565666778888889999999999999975310 0132 346888888888999
Q ss_pred CHHHHHHHHHhCCCC-C--CHhHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHH
Q 037414 357 RLDEALKLIESMSVE-K--DEGLWGALLGACRI-HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRD 432 (577)
Q Consensus 357 ~~~~A~~~~~~m~~~-p--~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (577)
.++.|..+|.+.-.. | ....|......-.+ .++.+.|..+|+.+++..|.++..+...+......|+.+.|..+|+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999987212 2 23344433333333 3569999999999999999999888889998889999999999999
Q ss_pred HHhhCCC
Q 037414 433 LMTRRRL 439 (577)
Q Consensus 433 ~m~~~g~ 439 (577)
.......
T Consensus 529 ral~~~~ 535 (679)
T 4e6h_A 529 SSIDKIS 535 (679)
T ss_dssp HHTTTSS
T ss_pred HHHHhcC
Confidence 9887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=5e-09 Score=96.77 Aligned_cols=166 Identities=8% Similarity=-0.062 Sum_probs=142.6
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHH
Q 037414 269 KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTC 347 (577)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 347 (577)
.|+..|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++ ..| +...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHH
Confidence 456778888999999999999999999999875447888887889999999999999999999974 345 4678889
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCC-H-------hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEKD-E-------GLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSN 416 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 416 (577)
+...|...|++++|.+.+++. ...|+ . ..|..+...+...|++++|+..++++++.+|. ++..+..+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999987 33443 3 45777888899999999999999999999999 8899999999
Q ss_pred HHhccCCh---------------------------hHHHHHHHHHhhC
Q 037414 417 VYANAGRW---------------------------QDVAKIRDLMTRR 437 (577)
Q Consensus 417 ~~~~~g~~---------------------------~~A~~~~~~m~~~ 437 (577)
+|...|+. ++|...+++..+.
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99988888 7788888777653
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=3.7e-09 Score=100.57 Aligned_cols=228 Identities=15% Similarity=0.152 Sum_probs=150.0
Q ss_pred HhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-----------CChh
Q 037414 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----------KNVI 272 (577)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----------~~~~ 272 (577)
...|++++|...|++..+. +..+.. ...+....++..+...|...|++++|...|++..+ ....
T Consensus 12 ~~~~~~~~A~~~~~~al~~----~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALED----LEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHH----HHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH----HHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 4568888888888876541 222211 12233467788888899999999999988887652 1234
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhC------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhc-----CCCC
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSS------RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDF-----AVRP 340 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 340 (577)
+|..+...|...|++++|.+.|++.... ...| ...++..+...+...|++++|..+++.+++.. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 6788888888999999999999888764 1123 34567778888888999999999988886531 1122
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHhC----------CCCCCH-hHHHHHHHHHHhcCCH------HHHHHHHHHHHh
Q 037414 341 -DVKHYTCMVDLLGRAGRLDEALKLIESM----------SVEKDE-GLWGALLGACRIHKNV------DLAEMAAKSLLE 402 (577)
Q Consensus 341 -~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~p~~-~~~~~ll~~~~~~g~~------~~a~~~~~~~~~ 402 (577)
....+..+...|.+.|++++|.+.+++. ...+.. ..|..+.......+.. ..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 3567778888888999999998888766 112222 2444433333333322 222222222222
Q ss_pred cCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 403 RQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 403 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..|..+.++..++.+|...|++++|.+.+++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2344556888999999999999999999998764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=4.8e-08 Score=94.04 Aligned_cols=26 Identities=4% Similarity=-0.065 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhC
Q 037414 194 FVCAALVDMYAKCKVIDDARQLFDQM 219 (577)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~m 219 (577)
.+++.+..+|.+.|++++|...|++.
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555555566666666665555543
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.99 E-value=4.5e-09 Score=113.49 Aligned_cols=163 Identities=11% Similarity=0.099 Sum_probs=143.7
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSL 312 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 312 (577)
+.+...++.|...|.+.|++++|.+.|++..+ .+...|+.+...|.+.|++++|++.|++.++. .| +...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34578999999999999999999999999864 45778999999999999999999999999885 44 46789999
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKN 389 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 389 (577)
..++...|++++|.+.|++.++. .| +...|..+..+|.+.|++++|++.|++. .+.| +...|..+...+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999853 45 4788999999999999999999999987 5566 45689999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 037414 390 VDLAEMAAKSLLERQ 404 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~ 404 (577)
+++|.+.++++++..
T Consensus 161 ~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 161 WTDYDERMKKLVSIV 175 (723)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988754
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=5.2e-08 Score=91.96 Aligned_cols=204 Identities=10% Similarity=0.039 Sum_probs=126.3
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCC-CCC-HHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSSRV-LPN-RITFV 310 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 310 (577)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+...|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345555666666677777777777776653 22 34555666666677777777777776665421 112 23444
Q ss_pred HHHHHHhc--------cCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 037414 311 SLLYACSH--------TGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALL 381 (577)
Q Consensus 311 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 381 (577)
.+..++.. .|++++|...|+.+++.+ |+ .....++.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 666666666666665432 22 11111111110000000 01245667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHhcc----------CChhHHHHHHHHHhhCCCccCCceeEE
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLSNVYANA----------GRWQDVAKIRDLMTRRRLKKIPGWTWI 448 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~s~~ 448 (577)
..+...|++++|+..++++++..|++ +..+..++.+|... |++++|...+++..+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 78899999999999999999999885 45788899999876 899999999999876432
Q ss_pred EECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 037414 449 EVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLEL 483 (577)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 483 (577)
.+|...++...+..+...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 234456666666666666654
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=2.7e-08 Score=93.96 Aligned_cols=164 Identities=13% Similarity=0.067 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHH--------cCChHHHHHHHHHhhhCCCCCC
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KN----VISWSAMIAAYGY--------HGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
...+..+..+|.+.|++++|...|++..+ |+ ...+..+..++.. .|++++|+..|++..+. .|+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcC
Confidence 67888999999999999999999999864 32 3457777888888 99999999999999875 333
Q ss_pred H-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHH
Q 037414 306 R-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGA 379 (577)
Q Consensus 306 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ 379 (577)
. ..... ...+...... -...+..+...|.+.|++++|...|++. ...|+ ...+..
T Consensus 130 ~~~~~~a--------------~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 190 (261)
T 3qky_A 130 HELVDDA--------------TQKIRELRAK-----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVG 190 (261)
T ss_dssp CTTHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred chhHHHH--------------HHHHHHHHHH-----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 2 11111 1111111100 0122456677888999999999999887 22343 336666
Q ss_pred HHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchh---HHHHHHHHhccCCh
Q 037414 380 LLGACRIH----------KNVDLAEMAAKSLLERQPQNPGH---YVLLSNVYANAGRW 424 (577)
Q Consensus 380 ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 424 (577)
+..++... |++++|...++++++..|+++.. +..+..++...+++
T Consensus 191 l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 191 AMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 77777755 88999999999999999998643 33444444444433
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=1.2e-08 Score=98.26 Aligned_cols=188 Identities=11% Similarity=0.034 Sum_probs=138.6
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSL 312 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l 312 (577)
...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+. |-.+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5568889999999999987753 12 457899999999999999999999988753 21111 3478888
Q ss_pred HHHHhcc-CCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---H-----hHHH
Q 037414 313 LYACSHT-GLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD---E-----GLWG 378 (577)
Q Consensus 313 l~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~ 378 (577)
...|... |++++|...|++.++-..-..+ ..++..+...|.+.|++++|...|++. ...|+ . ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8899996 9999999999998753211111 356888899999999999999999987 22332 1 1567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----HHHHHHHHh--ccCChhHHHHHHHHH
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGH-----YVLLSNVYA--NAGRWQDVAKIRDLM 434 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 434 (577)
.+..++...|++++|...+++.++..|..... +..++..|. ..+++++|.+.++.+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 77788999999999999999999998875543 345666664 567788888887554
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=1.2e-07 Score=87.30 Aligned_cols=184 Identities=11% Similarity=0.004 Sum_probs=119.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CCH-HHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNR-ITFV 310 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~ 310 (577)
+...+..+...+.+.|++++|...|+++.+ |+. ..+..+..+|.+.|++++|+..|++..+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677778888888888888888764 332 35677788888888888888888888764322 111 1333
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 037414 311 SLLYACSH------------------TGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEALKLIESMSVE 371 (577)
Q Consensus 311 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 371 (577)
.+..++.. .|+.++|...|+.+++. .|+. ..+.+.... +.+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHHH---------
Confidence 33333332 34555666666655532 2221 111111100 0000000
Q ss_pred CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 372 KDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP---GHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
......+...+...|++++|+..++++++..|+++ .++..+..+|.+.|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445668889999999999999999999876 56889999999999999999999999876653
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.91 E-value=5.2e-08 Score=80.78 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhc
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGACRIH 387 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~ 387 (577)
..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|.+.++++ ... .+...|..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444445555555555555555432 1223444555555555666666666666554 112 2445666666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777777777777777777777777777777776543
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.9e-07 Score=88.79 Aligned_cols=164 Identities=11% Similarity=0.025 Sum_probs=117.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-----CHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQK-----NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-----NRITF 309 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~ 309 (577)
......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHH
Confidence 334457778888888888888888887442 3456777788899999999999999998774 56 35566
Q ss_pred HHHHHHH--hccC--CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----------CC-C
Q 037414 310 VSLLYAC--SHTG--LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV----------EK-D 373 (577)
Q Consensus 310 ~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p-~ 373 (577)
..+..++ ...| +.++|..+|+++.++ .|+......++.++.+.|++++|++.++.+ .. .| |
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 6666663 2234 888999999998643 355333344555788899999999998765 21 24 4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
+.+...++......|+ .|.++++++.+..|+++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 5566566666666676 8889999999999998743
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.87 E-value=9.1e-09 Score=97.82 Aligned_cols=228 Identities=11% Similarity=0.010 Sum_probs=144.1
Q ss_pred HhCCChhHHHHHHHHHHHC-------CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHc------CC-CCcHHHHHHH
Q 037414 134 SKVADFINCFETFREFIRC-------GMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKS------GL-DIDQFVCAAL 199 (577)
Q Consensus 134 ~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~l 199 (577)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...+.++++. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3455666666666555441 11123456677777788888888888888877764 22 2345678888
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCC--------C-
Q 037414 200 VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQK--------N- 270 (577)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~--------~- 270 (577)
...|...|++++|.+.|++..+.-... .+...+....++..+...|...|++++|...|++..+. +
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKV-----LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHH-----cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 899999999999999988765310000 00001224668889999999999999999999987531 2
Q ss_pred --hhhHHHHHHHHHHcCChHHHHHHHHHhhhC-------CCCCCHH-HHHHHHHHHhcc------CCHHHHHHHHHHhhH
Q 037414 271 --VISWSAMIAAYGYHGQGKKALDLFPMMLSS-------RVLPNRI-TFVSLLYACSHT------GLVEEGLRLFSSMWD 334 (577)
Q Consensus 271 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~a~~~~------g~~~~a~~~~~~m~~ 334 (577)
..++..+...|...|++++|...|++..+. ...+... .+..+....... ..+..+...+.....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 356888899999999999999999998763 1122222 222222222222 223334444433321
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
..+.....+..+...|.+.|++++|.+++++.
T Consensus 247 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 247 --DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11223567888999999999999999999874
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.87 E-value=3.8e-07 Score=86.64 Aligned_cols=175 Identities=10% Similarity=0.028 Sum_probs=136.6
Q ss_pred HHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 259 AREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 259 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
|...|++..+ ++..++..+..++...|++++|++++.+.+..|..+ +...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7778887653 555666788899999999999999999987765423 456777888999999999999999999964
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 037414 335 DFAVRP-----DVKHYTCMVDL--LGRAG--RLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLER- 403 (577)
Q Consensus 335 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 403 (577)
..| +..+...|..+ ....| +..+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456 34555555555 33334 899999999999 43465344445556899999999999999988776
Q ss_pred ---------CCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 404 ---------QPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 404 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|+++.++..++..+...|+ +|.+++.++.+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48899999888888888887 8999999998754
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=1.2e-07 Score=78.52 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566666667777777777777766542 234555666666677777777777777776543 123455666677777
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 353 GRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 353 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.+.|++++|.+.++++ ...| +...|..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777766 2223 4567777777788888888888888888777765
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.82 E-value=8.5e-09 Score=88.39 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=101.9
Q ss_pred HHHHHcCChHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcC
Q 037414 279 AAYGYHGQGKKALDLFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAG 356 (577)
Q Consensus 279 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 356 (577)
..+...|++++|++.+++.... .|+ ...+..+...|...|++++|.+.|+..++. .| +...|..+...|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444566777777777776543 333 234456677778888888888888887643 34 4677788888888888
Q ss_pred CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 357 RLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMA-AKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 357 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
++++|...|++. .+.| +...|..+...+...|+.++|.+. ++++++.+|.++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888776 4455 456888888888888888766554 588999999999888888888887775
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.80 E-value=1.2e-07 Score=90.89 Aligned_cols=176 Identities=10% Similarity=-0.046 Sum_probs=139.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHh
Q 037414 256 IDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDD 335 (577)
Q Consensus 256 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 335 (577)
.+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 3444455555554555677788888999999999999999998752 33566788888999999999999999999864
Q ss_pred cCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chh
Q 037414 336 FAVRPDVKHYTCMV-DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN--PGH 410 (577)
Q Consensus 336 ~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 410 (577)
..|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 356554333333 2366778888888888776 3345 56789999999999999999999999999999987 789
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHh
Q 037414 411 YVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+..++.+|...|+.++|...+++-.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.80 E-value=2.4e-08 Score=108.02 Aligned_cols=168 Identities=13% Similarity=-0.048 Sum_probs=142.8
Q ss_pred HhcCCHHHHHHHHHhcc--------C---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc
Q 037414 251 AKCGSIDSAREIFDRMR--------Q---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT 319 (577)
Q Consensus 251 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 319 (577)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999886 2 456788889999999999999999999998752 33567888888899999
Q ss_pred CCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
|++++|...|++.++. .| +...|..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999853 45 46788899999999999999 9999887 4445 566899999999999999999999
Q ss_pred HHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 397 AKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 397 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
++++++.+|.+..++..+..+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999987666
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.74 E-value=2.1e-07 Score=90.17 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC----CHH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLP-NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP----DVK 343 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~ 343 (577)
+|+.+...|...|++++|+..|++..+. |-.. -..++..+...|.. |++++|...|++.++-..-.. ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 5666677777777777777777765432 2111 13466677777877 899999888888764321111 145
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh-----
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SV---EKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGH----- 410 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----- 410 (577)
++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|++++|...+++.+ ..|....+
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 6777888899999999999988876 11 112 1256666677778899999999999999 88765432
Q ss_pred HHHHHHHHhccCChhHHHH
Q 037414 411 YVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~ 429 (577)
...++..| ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 34455555 5677666555
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=9.7e-07 Score=80.33 Aligned_cols=173 Identities=8% Similarity=-0.071 Sum_probs=137.9
Q ss_pred HHHHHHHhccC-CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHh
Q 037414 258 SAREIFDRMRQ-KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG----LVEEGLRLFSSM 332 (577)
Q Consensus 258 ~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 332 (577)
+|.+.|++..+ .++..+..+...|...+++++|+..|++..+.| +...+..|-..|.. + +.++|.++|+..
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 35555655543 577788888889999999999999999998876 55666677777777 6 899999999998
Q ss_pred hHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 037414 333 WDDFAVRPDVKHYTCMVDLLGR----AGRLDEALKLIESM-SVEKD---EGLWGALLGACRI----HKNVDLAEMAAKSL 400 (577)
Q Consensus 333 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 400 (577)
.+. -+...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .++.++|...+++.
T Consensus 80 ~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 643 356677777788876 78999999999988 33342 6788888888888 78999999999999
Q ss_pred HhcCCCCchhHHHHHHHHhcc-C-----ChhHHHHHHHHHhhCCC
Q 037414 401 LERQPQNPGHYVLLSNVYANA-G-----RWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 401 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 439 (577)
.+. |.++..+..|..+|... | ++++|...++...+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 66677888999998764 3 89999999998887664
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.70 E-value=2.1e-07 Score=81.91 Aligned_cols=157 Identities=11% Similarity=-0.042 Sum_probs=92.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.... .|+..... +...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~-~~~~~-- 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKS-LIAKL-- 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHH-HHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHH-HHHHH--
Confidence 344555566666666666666666553 33455566666666666666666666665443 22222111 11000
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMA 396 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 396 (577)
. +...+...+|...+++. ...| +...+..+...+...|++++|...
T Consensus 83 -------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 83 -------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp -------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 00111112234444443 2244 456777777788888888888888
Q ss_pred HHHHHhcCCCC--chhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 397 AKSLLERQPQN--PGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 397 ~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
++++++.+|.. +..+..+..+|...|+.++|...+++..
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 88888888764 4577888888888888888888777654
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=8.2e-07 Score=96.05 Aligned_cols=182 Identities=13% Similarity=-0.025 Sum_probs=141.0
Q ss_pred hcCCChHHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcch
Q 037414 169 RDRKDIVMGRLIHDIVL--------KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDV 240 (577)
Q Consensus 169 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~ 240 (577)
...+++++|.+.+++.+ +.. +.+...+..+...|.+.|++++|.+.|++..+.+ +.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------------p~~~ 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------------GWRW 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------CCCH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------------cchH
Confidence 67889999999999887 432 5567788888999999999999999998876422 2256
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
..+..+..+|.+.|++++|...|++..+ .+...|..+...|.+.|++++ ++.|++..+.. +-+...+..+..++.
T Consensus 468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~ 545 (681)
T 2pzi_A 468 RLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARS 545 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence 6788888999999999999999998764 356788889999999999999 99999988753 335667888888999
Q ss_pred ccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCC--------HHHHHHHHHhCC
Q 037414 318 HTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGR--------LDEALKLIESMS 369 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~--------~~~A~~~~~~m~ 369 (577)
..|++++|.+.|++++ .+.|+ ...+..+..+|...|+ +++|.+.+..+.
T Consensus 546 ~~g~~~~A~~~~~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 546 AEGDRVGAVRTLDEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTTCHHHHHHHHHTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HcCCHHHHHHHHHhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9999999999999886 45665 5666667777655443 677777777773
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=5.2e-07 Score=95.60 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=123.8
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLF 329 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 329 (577)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356789999999999999999999999998863 335678888999999999999999999
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIH---KNVDLAEMAAKSLLERQ 404 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~ 404 (577)
++.++. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2335788899999999999999999999987 3344 566888899999999 99999999999999999
Q ss_pred CCCchhHHHHH
Q 037414 405 PQNPGHYVLLS 415 (577)
Q Consensus 405 p~~~~~~~~l~ 415 (577)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777665
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=2.9e-07 Score=97.52 Aligned_cols=151 Identities=14% Similarity=0.038 Sum_probs=117.1
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 362 (577)
.|++++|++.|++..+.. +-+...+..+...+...|++++|.+.+++.++ ..| +...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988752 33467888899999999999999999999974 345 4788889999999999999999
Q ss_pred HHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc---CChhHHHHHHHHHhhC
Q 037414 363 KLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA---GRWQDVAKIRDLMTRR 437 (577)
Q Consensus 363 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 437 (577)
+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3345 5678999999999999999999999999999999999999999999999 9999999999988665
Q ss_pred C
Q 037414 438 R 438 (577)
Q Consensus 438 g 438 (577)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=4.8e-07 Score=86.72 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-
Q 037414 190 DIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ- 268 (577)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~- 268 (577)
+.+...+..+...+...|++++|...|++..+.++ .+...+..|...|.+.|++++|...++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-------------~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-------------QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------------SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-------------cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 33444445555555556666666665555433211 1334455555555566666666666655543
Q ss_pred -CChhhHHH-HHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHH
Q 037414 269 -KNVISWSA-MIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYT 346 (577)
Q Consensus 269 -~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 346 (577)
|+...... ....+.+.++.++|+..|++..... +.+...+..+..++...|++++|...|..+++...-..+...+.
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 33222111 1222445555666666666665542 23445555666666666666666666666654311111244556
Q ss_pred HHHHHHHHcCCHHHHHHHHHh
Q 037414 347 CMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~ 367 (577)
.+...|...|+.++|...+++
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHH
Confidence 666666666666666555543
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=1e-06 Score=81.00 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=104.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChh----hHHHHHHHHHH------------------cCChHHHHHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVI----SWSAMIAAYGY------------------HGQGKKALDLFP 295 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~~~~~------------------~g~~~~A~~l~~ 295 (577)
...+..+..+|.+.|++++|...|++..+ |+.. .+..+...+.. .|++++|+..|+
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 35788899999999999999999999864 4322 45555555554 578999999999
Q ss_pred HhhhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 037414 296 MMLSSRVLPNRI-TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD 373 (577)
Q Consensus 296 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 373 (577)
++.+. .|+.. ...... +. ..+...+ ......+...|.+.|++++|...|+++ ...|+
T Consensus 121 ~~l~~--~P~~~~a~~a~~----~l------~~~~~~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 121 KLVRG--YPNSQYTTDATK----RL------VFLKDRL---------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHTT--CTTCTTHHHHHH----HH------HHHHHHH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH--CcCChhHHHHHH----HH------HHHHHHH---------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 99875 34432 211111 00 0111111 112234567788999999999999987 33444
Q ss_pred H----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 374 E----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 374 ~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
. ..+..+..++.+.|+.++|...++.+....|++..
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 2 46888889999999999999999999988887653
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=3.9e-07 Score=82.72 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=36.8
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHH
Q 037414 199 LVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWS 275 (577)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 275 (577)
+..+|.+.|++++|...|++..+.++ .+...+..+..+|...|++++|...|++..+ .+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-------------NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 55555556666666665555433211 1344455555555555555555555555442 2334455
Q ss_pred HHHHHHHHc
Q 037414 276 AMIAAYGYH 284 (577)
Q Consensus 276 ~li~~~~~~ 284 (577)
.+...|...
T Consensus 127 ~lg~~~~~~ 135 (208)
T 3urz_A 127 FLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544433
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.64 E-value=7.2e-07 Score=78.47 Aligned_cols=125 Identities=15% Similarity=0.099 Sum_probs=78.1
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHH-HHHcCChHHHHHHHHHhhhCCCCC-CHHHHHHHH
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAA-YGYHGQGKKALDLFPMMLSSRVLP-NRITFVSLL 313 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll 313 (577)
.+...+..+...|.+.|++++|...|++..+ |+...+...... +...+...+|+..|++..+. .| +...+..+.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la 115 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELA 115 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3577899999999999999999999999875 433322222111 12222333456666666653 23 355566666
Q ss_pred HHHhccCCHHHHHHHHHHhhHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 037414 314 YACSHTGLVEEGLRLFSSMWDDFAVRPD---VKHYTCMVDLLGRAGRLDEALKLIES 367 (577)
Q Consensus 314 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 367 (577)
.++...|++++|...|+.+++ ..|+ ...+..+...|...|+.++|...|++
T Consensus 116 ~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 666677777777777776653 2332 34566666666666666666666553
No 109
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.63 E-value=7.9e-08 Score=82.26 Aligned_cols=122 Identities=16% Similarity=0.041 Sum_probs=100.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK 388 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 388 (577)
|-..+...|++++|...+.... ...|+ ...+..+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667789999999998875 33443 445567888999999999999999987 4456 5679999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHH-HHHHhh
Q 037414 389 NVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKI-RDLMTR 436 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 436 (577)
++++|+..++++++.+|.++.+|..+..+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466654
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=2.9e-07 Score=78.61 Aligned_cols=102 Identities=10% Similarity=0.014 Sum_probs=87.6
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 337 AVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 337 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++.+|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34453 456777778888999999999999887 4455 56789999999999999999999999999999999999999
Q ss_pred HHHHHhccCChhHHHHHHHHHhhCC
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+..+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999887643
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=7.9e-07 Score=80.64 Aligned_cols=160 Identities=10% Similarity=0.014 Sum_probs=114.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHH----------------HHHHHHHcCChHHHHHHHHHhhhCCCC
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSA----------------MIAAYGYHGQGKKALDLFPMMLSSRVL 303 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~ 303 (577)
.......+.+.|++++|...|++..+ | +...|.. +...|.+.|++++|+..|++..+.. +
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 33456677889999999999998865 2 2345656 7888888999999999999888753 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHhCCCCCCHh--HHH
Q 037414 304 PNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGR--LDEALKLIESMSVEKDEG--LWG 378 (577)
Q Consensus 304 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~p~~~--~~~ 378 (577)
-+...+..+...+...|++++|...|+..++. .| +...+..+...|...|+ .+.+...++... .|+.. .+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 35667788888888899999999999988753 44 46677777777765543 445566666653 34433 344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
....++...|++++|+..++++++..|++
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 44555667788899999999999888864
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=2.5e-06 Score=77.23 Aligned_cols=145 Identities=7% Similarity=-0.082 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLV 322 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 322 (577)
+..+...|...|++++|...|++..+++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556666677777777777777766666667777777777777777777777666542 23445566666666666666
Q ss_pred HHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 323 EEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKD-EGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
++|.+.|+..++...-.+... +...| +...|+ ...|..+...+...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666666654211111000 00000 012222 2466677777778888888888888888
Q ss_pred hcCCCC
Q 037414 402 ERQPQN 407 (577)
Q Consensus 402 ~~~p~~ 407 (577)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 877765
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=2e-06 Score=77.87 Aligned_cols=125 Identities=15% Similarity=0.048 Sum_probs=97.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRI 386 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 386 (577)
+..+...+...|++++|...|+..+ .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666777777777776652 456667777777777788888888777766 2233 55678888888889
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc----------------hhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 387 HKNVDLAEMAAKSLLERQPQNP----------------GHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 387 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.|++++|...++++++..|.+. ..+..+..+|...|++++|.+.++...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999998888776 889999999999999999999999988654
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=6.5e-07 Score=73.90 Aligned_cols=93 Identities=6% Similarity=0.028 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.+.-....|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|+++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444445555555555555555554 2223 3445555555555566666666666666666666555566666666666
Q ss_pred CChhHHHHHHHHHhh
Q 037414 422 GRWQDVAKIRDLMTR 436 (577)
Q Consensus 422 g~~~~A~~~~~~m~~ 436 (577)
|++++|.+.+++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666555543
No 115
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.52 E-value=3.5e-06 Score=76.61 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----CHHHHHHHH
Q 037414 141 NCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK----VIDDARQLF 216 (577)
Q Consensus 141 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 216 (577)
+|++.|++..+.| +...+..+-..+...+++++|...+++..+.| +...+..|..+|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3445555555442 44445555555555556666666665555543 33444555555555 4 556666655
Q ss_pred hhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHh----cCCHHHHHHHHHhccCCC-----hhhHHHHHHHHHH----
Q 037414 217 DQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAK----CGSIDSAREIFDRMRQKN-----VISWSAMIAAYGY---- 283 (577)
Q Consensus 217 ~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~---- 283 (577)
++..+++ +...+..|..+|.. .+++++|..+|++..+.+ +..+..|...|..
T Consensus 77 ~~A~~~g---------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 77 EKAVEAG---------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHTT---------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHCC---------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence 5543221 23344445555554 556666666666555422 3555556566655
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHhhH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHT-G-----LVEEGLRLFSSMWD 334 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~ 334 (577)
.+++++|...|++..+.+ .+...+..|...|... | +.++|...|+...+
T Consensus 142 ~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp SCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 556666666666665541 1222334444444322 2 56666666666543
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.50 E-value=4.4e-05 Score=73.06 Aligned_cols=227 Identities=8% Similarity=0.016 Sum_probs=151.7
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC--CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCK--VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDM 249 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~ 249 (577)
...++|.+..+.++..+ |-+..+|+.--.++...| +++++++.++.+...++- +..+|+--...
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-------------~y~aW~~R~~i 112 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-------------NYQIWNYRQLI 112 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-------------CCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-------------cHHHHHHHHHH
Confidence 33456777777777664 445566676666666677 788888877776543222 12223222222
Q ss_pred H----Hhc---CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChH--HHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 250 Y----AKC---GSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGK--KALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 250 ~----~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
+ .+. +++++++.+++++.+ +|...|+--...+.+.|.++ ++++.++++.+... -|...++.-...+.
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 2 334 788999999998875 56778888778888888888 99999999988643 36666665555556
Q ss_pred ccCC------HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHhHHHHHHHHHH
Q 037414 318 HTGL------VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE-ALKLIESM-SV----EKDEGLWGALLGACR 385 (577)
Q Consensus 318 ~~g~------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~ 385 (577)
+.+. ++++.+.++.+++. -+-+...|+-+-..+.+.|+..+ +.++.++. .. ..+...+..+...+.
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 6665 78888888877753 23456777777777777777433 45566655 21 235567777777777
Q ss_pred hcCCHHHHHHHHHHHHh-cCCCCchhHHHHH
Q 037414 386 IHKNVDLAEMAAKSLLE-RQPQNPGHYVLLS 415 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~ 415 (577)
+.|+.++|.++++.+.+ .+|.....|...+
T Consensus 270 ~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 88888888888888876 5777666655443
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.48 E-value=2.5e-06 Score=70.30 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=91.6
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 037414 302 VLPNR-ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWG 378 (577)
Q Consensus 302 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 378 (577)
+.|+. ..+......+.+.|++++|.+.|++.++. -+.+...|..+..+|.+.|++++|++.|++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35666777888889999999999888753 2335778888888999999999999998887 3444 566899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+..++...|++++|+..++++++.+|+++.++..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999999887777654
No 118
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=3.5e-06 Score=68.42 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVE-KDEGLWGALLGA 383 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~ 383 (577)
...+..+...+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|..+++++ ... .+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345556666777777777777777777643 1234566777777778888888888877776 222 356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccC
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAG 422 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 422 (577)
+...|++++|...++++.+..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888888888877777765543
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=3.9e-06 Score=72.34 Aligned_cols=127 Identities=7% Similarity=-0.034 Sum_probs=96.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
.+..+...+...|++++|...|+..++. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555666667777788888777777643 2234667777778888888888888888776 2234 5668888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH--HhccCChhHHHHHHHHHhh
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV--YANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 436 (577)
..|++++|...++++++..|.++..+..+..+ +...|++++|.+.+....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999988777544444 7888999999999876643
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=7.4e-07 Score=75.93 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=83.9
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 338 VRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 338 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++..+..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 444 3456667778888999999999999887 3344 667888888889999999999999999999999999999999
Q ss_pred HHHHhccCChhHHHHHHHHHhhC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
..+|...|++++|.+.++...+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.45 E-value=9.5e-06 Score=77.78 Aligned_cols=161 Identities=8% Similarity=-0.031 Sum_probs=118.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHH
Q 037414 276 AMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI----TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYT 346 (577)
Q Consensus 276 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 346 (577)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+++...-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667788899999999998887642 223321 2334666677778999999999988753222222 33688
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-----CC---CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhH
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-----SV---EKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHY 411 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 411 (577)
.+...|...|++++|...|++. .. .+. ..++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999998888776 11 111 2377888899999999999999999998764322 5688
Q ss_pred HHHHHHHhccCC-hhHHHHHHHHHhh
Q 037414 412 VLLSNVYANAGR-WQDVAKIRDLMTR 436 (577)
Q Consensus 412 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 436 (577)
..+..+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999998887653
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=5.8e-07 Score=85.84 Aligned_cols=192 Identities=9% Similarity=-0.039 Sum_probs=136.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456778889999999999999999998764 467789999999999999999999999998753 3356788888999
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
+...|++++|...|+..++. .|+. ..+...+....+..+...... .......++..... .+..+. .|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~-~l~~l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHS-YLTRLI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHH-HHHHHH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHH-HHHHHH-HHHHHHHH
Confidence 99999999999999988753 2221 011111211111111111111 12222233333333 333333 68999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHhcc-CChhHHHHHHHHHhhC
Q 037414 395 MAAKSLLERQPQNPGHYVLLSNVYANA-GRWQDVAKIRDLMTRR 437 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 437 (577)
+.++++++.+|++......+...+.+. +++++|.++|....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777666 7789999999887654
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.44 E-value=1.1e-05 Score=77.32 Aligned_cols=214 Identities=13% Similarity=0.140 Sum_probs=162.0
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHH
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAMIAAY 281 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~ 281 (577)
...++|+++++.+...++. +..+|+.--..+...| +++++++.++.+.. .+...|+.--..+
T Consensus 47 e~s~~aL~~t~~~L~~nP~-------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL 113 (306)
T 3dra_A 47 EYSERALHITELGINELAS-------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII 113 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcH-------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 3346788888777653322 3446666677777888 99999999999875 4556777655555
Q ss_pred ----HHc---CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 282 ----GYH---GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE--EGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 282 ----~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
... +++++++++++++.+.. +-|...+..-.-.+.+.|.++ ++.+.++.+++. -.-+...|+.-...+
T Consensus 114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll 190 (306)
T 3dra_A 114 GQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 555 78999999999999863 446677776666677778877 999999999864 234566676666666
Q ss_pred HHcCC------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC---CCCchhHHHHHHHHhc
Q 037414 353 GRAGR------LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV-DLAEMAAKSLLERQ---PQNPGHYVLLSNVYAN 420 (577)
Q Consensus 353 ~~~g~------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~ 420 (577)
.+.|+ ++++++.++++ ...| |...|+-+-..+...|+. +....+.+++.+.+ |.++.++..++.+|.+
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 66666 88999988876 3344 778999888888888874 44566777777665 8888899999999999
Q ss_pred cCChhHHHHHHHHHhh
Q 037414 421 AGRWQDVAKIRDLMTR 436 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (577)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999999875
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.42 E-value=4.8e-06 Score=68.23 Aligned_cols=117 Identities=11% Similarity=-0.015 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA 383 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 383 (577)
...+..+...+...|++++|...++...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666667777788888888888877653 2235667777788888888888888888776 2234 46678888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCCh
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRW 424 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 424 (577)
+...|++++|...++++.+..|.++..+..+..++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999888888888888887765
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.42 E-value=7.5e-06 Score=78.51 Aligned_cols=163 Identities=7% Similarity=-0.054 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC-H----HHHHHHHHHHhccCCHHHHHHHHHHhhHhcC--CCCC--HH
Q 037414 273 SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN-R----ITFVSLLYACSHTGLVEEGLRLFSSMWDDFA--VRPD--VK 343 (577)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 343 (577)
.+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...+...++... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888887777665432211 1 1233345556777888888888887764211 1111 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Cc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM----SVEKD-----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ------NP 408 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 408 (577)
+|+.+...|...|++++|.+.|++. ...|+ ..++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888765 11222 247788888899999999999999998875422 14
Q ss_pred hhHHHHHHHHhccCChhHH-HHHHHHHh
Q 037414 409 GHYVLLSNVYANAGRWQDV-AKIRDLMT 435 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (577)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788899999999999999 77676554
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.41 E-value=7.5e-06 Score=76.69 Aligned_cols=196 Identities=10% Similarity=-0.065 Sum_probs=97.1
Q ss_pred cCCChHHHHHHHHHHHHcCCCCcHHHHHHH-------HHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCC-------
Q 037414 170 DRKDIVMGRLIHDIVLKSGLDIDQFVCAAL-------VDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANK------- 235 (577)
Q Consensus 170 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g------- 235 (577)
..++.+.|.+.|.++.+.. +.....|..+ ...+.+.++..++...+++-.+..+....+.+.-.|
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777764 3445566655 344444444555555555544433322222111001
Q ss_pred -CCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC--HHHHH
Q 037414 236 -FLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN--RITFV 310 (577)
Q Consensus 236 -~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~ 310 (577)
+..-..+.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 011133445566667777777777777777753 322244444455666666666666666443321 111 12344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPD--VKHYTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
.+-.++...|++++|...|++.... ...|. .........++.+.|+.++|..+|+++
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555321 11132 122333333444444444444444444
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=4.9e-06 Score=70.11 Aligned_cols=96 Identities=10% Similarity=-0.011 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..+..+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 345556667788889999999988887 3344 56688888888999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhC
Q 037414 420 NAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (577)
..|++++|.+.++...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887654
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.40 E-value=1.5e-06 Score=84.16 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=126.0
Q ss_pred cCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhccCCHHHHHH
Q 037414 253 CGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN-RITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 253 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
.+++++|...|++. ...|...|++++|...|.+..+. |-.+. ..+|..+...|...|++++|..
T Consensus 29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 35666666665543 45667778888888777776543 21111 3467778888999999999999
Q ss_pred HHHHhhHhcCC--CC--CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---C----HhHHHHHHHHHHhcCCHHHHHH
Q 037414 328 LFSSMWDDFAV--RP--DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK---D----EGLWGALLGACRIHKNVDLAEM 395 (577)
Q Consensus 328 ~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~ 395 (577)
.|+..++-+.- .+ ...++..+...|.+ |++++|.+.|++. .+.| + ..++..+...+...|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887653211 11 14577788888988 9999999999876 1111 1 3478888899999999999999
Q ss_pred HHHHHHhcCCCCc------hhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 396 AAKSLLERQPQNP------GHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 396 ~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.++++++..|.+. ..+..++.++...|++++|...+++..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998765432 366777888889999999999999887
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.40 E-value=1.3e-06 Score=85.68 Aligned_cols=125 Identities=11% Similarity=-0.003 Sum_probs=96.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----------------VKHYTCMVDLLGRAGRLDEALKLIESM-SV 370 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 370 (577)
.+..+...+...|++++|...|+..++. .|+ ...|..+...|.+.|++++|.+.+++. .+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444444555555555555555555432 122 467888888999999999999999887 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHH-HHHHHHHh
Q 037414 371 EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDV-AKIRDLMT 435 (577)
Q Consensus 371 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 435 (577)
.| +...|..+..++...|++++|+..++++++.+|.++.++..+..++...|++++| ...++.|.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5678999999999999999999999999999999999999999999999999998 44666664
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=1.9e-05 Score=75.69 Aligned_cols=207 Identities=10% Similarity=0.055 Sum_probs=131.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcch---HHHHHHHHHhCCChhHHHHHHHHHHHCCC-C
Q 037414 80 HAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVS---WSVMVGGFSKVADFINCFETFREFIRCGM-Q 155 (577)
Q Consensus 80 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~ 155 (577)
+..+.+....|+..+...+...+.-. + ..+|..-...+... +...+..+...|++++|.+++++..+... .
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~ 108 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH 108 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC
Confidence 34443333467777777776666422 1 12333333333333 33346778899999999999999887421 2
Q ss_pred CCcc----hHHHHHHHHhcCCChHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhH
Q 037414 156 LDSY----TLPFVIRACRDRKDIVMGRLIHDIVLKSGLD-ID----QFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVT 226 (577)
Q Consensus 156 p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 226 (577)
|+.. .+..+...+...+++++|...+.++++.... ++ ..+++.+...|...|++++|...|++..+.-.
T Consensus 109 ~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-- 186 (293)
T 3u3w_A 109 PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE-- 186 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--
Confidence 2211 2234555677778999999999999884322 22 34789999999999999999999988752000
Q ss_pred HHHHHhcCCCCc-chhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCC-hHHHHHHHH
Q 037414 227 WTVMIGANKFLL-DVILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQ-GKKALDLFP 295 (577)
Q Consensus 227 ~~~~i~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~-~~~A~~l~~ 295 (577)
.. .+..+ ...++..+...|.+.|++++|...+++..+ .+ ...|..+...|.+.|+ +++|.+.|+
T Consensus 187 --~~---~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 187 --AL---HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp --HS---SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred --hc---ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 00 00011 234677888888888888888888877653 11 3467777777777774 477777776
Q ss_pred Hhh
Q 037414 296 MML 298 (577)
Q Consensus 296 ~m~ 298 (577)
+..
T Consensus 262 ~Al 264 (293)
T 3u3w_A 262 KAS 264 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=4e-06 Score=69.10 Aligned_cols=116 Identities=12% Similarity=0.007 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA 383 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~ 383 (577)
...+..+...+...|++++|...++..++. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555555555666666666666655421 1123455555666666666666666666655 2223 45577777777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCC
Q 037414 384 CRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGR 423 (577)
Q Consensus 384 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 423 (577)
+...|++++|...++++++..|.+...+..+..++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888877777777777766553
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.33 E-value=9.9e-06 Score=75.88 Aligned_cols=182 Identities=8% Similarity=-0.023 Sum_probs=139.1
Q ss_pred hcCCHHHHHHHHHhccC--C-ChhhHHHH-------HHHHHHcCChHHHHHHHHHhhhCCCCCC----------------
Q 037414 252 KCGSIDSAREIFDRMRQ--K-NVISWSAM-------IAAYGYHGQGKKALDLFPMMLSSRVLPN---------------- 305 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 305 (577)
..++.+.|.+.|.+..+ | ....|+.+ ...+...++..+++..++.-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 58999999999999875 3 35678877 5666666667777777666554 2221
Q ss_pred ------HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH----h
Q 037414 306 ------RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDE----G 375 (577)
Q Consensus 306 ------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 375 (577)
......+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233466778889999999999998863 3465445556666889999999999999987434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLERQ--PQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
.+..+..++...|++++|+..+++..... |. .+........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67778888999999999999999998543 44 44577889999999999999999999998644
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=9.6e-06 Score=77.73 Aligned_cols=162 Identities=12% Similarity=-0.040 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC--CC-h------hhHHHHHHHHHHcCChHHHHHHHHHhhhCCC---CCC--HH
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ--KN-V------ISWSAMIAAYGYHGQGKKALDLFPMMLSSRV---LPN--RI 307 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~-~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 307 (577)
.+...+..+...|++++|.+.+++..+ +. . ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567889999999999999986543 11 1 2244466677888999999999999875421 222 44
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC-H
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD-----VKHYTCMVDLLGRAGRLDEALKLIESM-------SVEKD-E 374 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~ 374 (577)
+++.+...|...|++++|..++++.++.....|+ ..++..+...|.+.|++++|.+.+++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888999999999999999999998732211222 257888899999999999999999876 11111 4
Q ss_pred hHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 037414 375 GLWGALLGACRIHKNVDLA-EMAAKSLLER 403 (577)
Q Consensus 375 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 403 (577)
.+|..+...+...|+.++| ...++++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888999999999999 7778887654
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.32 E-value=2.8e-06 Score=74.59 Aligned_cols=120 Identities=8% Similarity=0.045 Sum_probs=86.3
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHH-HHhcCCH--H
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGA-CRIHKNV--D 391 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 391 (577)
...|++++|...++..++. -+.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456777777777777643 2235667777777888888888888888776 2233 55567777777 6677887 8
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|...++++++.+|.++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888888888888888888888888888888888888877654
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=5.9e-06 Score=73.95 Aligned_cols=152 Identities=13% Similarity=0.008 Sum_probs=77.4
Q ss_pred HhcCCHHHHHH---HHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHhccCCH
Q 037414 251 AKCGSIDSARE---IFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLP-NRITFVSLLYACSHTGLV 322 (577)
Q Consensus 251 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~ 322 (577)
...|++++|.+ .+..-.......+..+...+...|++++|...+++.... |..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777 443322234456677777777777777777777766541 1122 223455555666666777
Q ss_pred HHHHHHHHHhhHhcCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH----hHHHHHHHHHHhcCC
Q 037414 323 EEGLRLFSSMWDDFAVRP-D----VKHYTCMVDLLGRAGRLDEALKLIESM----SVEKDE----GLWGALLGACRIHKN 389 (577)
Q Consensus 323 ~~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~----~~~~~ll~~~~~~g~ 389 (577)
++|...+++.++...-.+ + ...+..+...+...|++++|.+.+++. ...++. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 766666665543211111 1 233445555555566666665555543 001111 123444444555555
Q ss_pred HHHHHHHHHHHHh
Q 037414 390 VDLAEMAAKSLLE 402 (577)
Q Consensus 390 ~~~a~~~~~~~~~ 402 (577)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=5.5e-06 Score=65.80 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchhHHHHHHH
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQ--NPGHYVLLSNV 417 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 417 (577)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566777788888888888888776 2233 5667888888889999999999999999999998 88899999999
Q ss_pred Hhcc-CChhHHHHHHHHHhhCCC
Q 037414 418 YANA-GRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 418 ~~~~-g~~~~A~~~~~~m~~~g~ 439 (577)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876543
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=6.6e-06 Score=67.49 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566667778888888888888776 3334 56688888888888899999999999999999988888888999999
Q ss_pred ccCChhHHHHHHHHHhhC
Q 037414 420 NAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~ 437 (577)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999888877654
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=1e-05 Score=69.58 Aligned_cols=125 Identities=14% Similarity=0.023 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHH
Q 037414 274 WSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLG 353 (577)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 353 (577)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++..++. .+.+...+..+...|.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 3333444444444444444444443321 112334444444444444444444444444332 1122344444444555
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 037414 354 RAGRLDEALKLIESM-SVEK-DEGLWGA--LLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555444 1122 2222222 2222444555555555555443
No 139
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.28 E-value=5.3e-05 Score=78.21 Aligned_cols=121 Identities=10% Similarity=-0.069 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-RLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
.|...+....+.+.++.|..+|+.. +..+ .+...|......-.+.+ +.+.|..+|+.. ..-| +...|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444455554555666666666666 2211 23333332222222222 466666666655 1112 233455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
...|+.+.|..+|+++ +.....|...+..-...|+.+.+.++++++.
T Consensus 365 ~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666665 2234455555555555677777766666554
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.27 E-value=1.3e-06 Score=78.45 Aligned_cols=173 Identities=7% Similarity=-0.057 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL 321 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 321 (577)
..+......|++++|.+.++...+ .....|..+...+...|++++|+..|++..... |+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 344455556666666666654332 233456666677777777777777777776532 111000000 0
Q ss_pred HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
.+.-. .. .....|..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...+++
T Consensus 79 ~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 00 01356667777888889999998888876 3334 566888888999999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhccCChhHHH-HHHHHHhhCC
Q 037414 400 LLERQPQNPGHYVLLSNVYANAGRWQDVA-KIRDLMTRRR 438 (577)
Q Consensus 400 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 438 (577)
+++..|.++..+..+..++...++.+++. ..+..|...+
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998888887777 5555554433
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.26 E-value=3.1e-05 Score=69.14 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=109.0
Q ss_pred HhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhhH
Q 037414 204 AKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---------KNVISW 274 (577)
Q Consensus 204 ~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~ 274 (577)
...|++++|.++++.+.. ++ .....++..+...|...|++++|...|++..+ .....+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 69 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP------------ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-Ch------------HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 457889999993332211 11 12456788899999999999999999988754 123568
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhhC----CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHH
Q 037414 275 SAMIAAYGYHGQGKKALDLFPMMLSS----RVLP--NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKH 344 (577)
Q Consensus 275 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 344 (577)
..+...|...|++++|...+++..+. +-.| ....+..+...+...|++++|...+++..+...-..+ ...
T Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 70 HQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 88889999999999999999987653 2122 2345777888899999999999999988643211122 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 037414 345 YTCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 345 ~~~li~~~~~~g~~~~A~~~~~~m 368 (577)
+..+...|...|++++|.+.+++.
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH
Confidence 677888899999999999888764
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=4e-06 Score=68.52 Aligned_cols=95 Identities=15% Similarity=-0.002 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445667788999999999999887 3445 6678888889999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCC
Q 037414 422 GRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 422 g~~~~A~~~~~~m~~~g 438 (577)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=7.1e-06 Score=69.74 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=88.0
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 037414 293 LFPMMLSSRVLPN-RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV 370 (577)
Q Consensus 293 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 370 (577)
.|+++... .|+ ...+..+...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|.+.|++. ..
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444432 343 345666777888889999999999988753 2335777888888899999999999999887 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 371 EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 371 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
.| +...|..+..++...|++++|...++++++..|+++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 44 556888888899999999999999999999998877553
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.24 E-value=1.3e-05 Score=64.96 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999987 2233 56788999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhCC
Q 037414 420 NAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g 438 (577)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999887643
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=1.4e-05 Score=66.51 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35677778888888888888888888876 3334 466888888889999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhCC
Q 037414 418 YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...|++++|...+++..+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999998887543
No 146
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=9.8e-05 Score=76.21 Aligned_cols=168 Identities=8% Similarity=-0.110 Sum_probs=112.3
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 257 DSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 257 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+.+..+|+++.. .+...|...+.-+.+.|+.++|.++|++.... |+...+.. +|......++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHH
Confidence 446677887654 34667888888888999999999999999987 44332221 22221111111 22222
Q ss_pred HhcC--------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC--CHhHHHHHHHHH-HhcCCHHHHHHHHHH
Q 037414 334 DDFA--------VRP---DVKHYTCMVDLLGRAGRLDEALKLIESMSVEK--DEGLWGALLGAC-RIHKNVDLAEMAAKS 399 (577)
Q Consensus 334 ~~~~--------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~-~~~g~~~~a~~~~~~ 399 (577)
+.+- ..+ ....|...++.+.+.+.++.|.++|++. ..| +...|......- ...++.+.|..+|+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 2110 001 1345667777777888999999999988 233 333444333222 223479999999999
Q ss_pred HHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 400 LLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 400 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+++..|+++..+...++...+.|+.+.|..+++..
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988877777888888899999999999886
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=66.18 Aligned_cols=99 Identities=9% Similarity=0.007 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34677888889999999999999999987 4455 667889999999999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHhhCC
Q 037414 418 YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999887643
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=1.6e-05 Score=63.68 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN 420 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 420 (577)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555666666666666554 2222 444555555666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHhh
Q 037414 421 AGRWQDVAKIRDLMTR 436 (577)
Q Consensus 421 ~g~~~~A~~~~~~m~~ 436 (577)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 6666666666665554
No 149
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.6e-05 Score=64.65 Aligned_cols=112 Identities=11% Similarity=-0.039 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWG 378 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 378 (577)
+...+..+...+...|++++|...|+..++ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555566666666666666666666652 3444 456666667777777777777777665 2233 455777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
.+..++...|++++|...++++++..|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 77777888888888888888888888887776666655543
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=1.3e-05 Score=69.29 Aligned_cols=95 Identities=8% Similarity=0.003 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..+..+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344555556666666666666666655 2233 44566666666666777777777777777777776666777777777
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777666654
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=4.3e-05 Score=61.08 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
..+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555566666777777777777776543 1234566667777777777888877777766 2233 456777778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
...|++++|...++++.+.+|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888888888888888888888887766665554
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.1e-05 Score=66.15 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=89.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 340 PDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
.+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|.++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888889999999999999999987 66777 56888888999999999999999999999999999999999
Q ss_pred HHHHhccCChhHHHHHHHHHhhCC
Q 037414 415 SNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
..+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999887643
No 153
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.16 E-value=2e-05 Score=68.95 Aligned_cols=127 Identities=8% Similarity=0.032 Sum_probs=91.1
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH-HHHcCCH--
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL-LGRAGRL-- 358 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 358 (577)
...|++++|+..+++..... +.+...+..+...|...|++++|...|+..++.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677777888887776642 3355677777788888888888888888876532 2345667777777 7788887
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 359 DEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888876 3344 456788888888999999999999999999998876433
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=8.3e-06 Score=77.69 Aligned_cols=187 Identities=10% Similarity=-0.066 Sum_probs=98.6
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCc
Q 037414 159 YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLL 238 (577)
Q Consensus 159 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~ 238 (577)
..+..+...+...|++++|...+.+.++.. +.+...+..+..+|.+.|++++|...|++..+.++ .
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------~ 70 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------Q 70 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-------------T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------C
Confidence 344455555666666666666666666653 33566666666777777777777777766655332 1
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+...+..+..+|...|++++|...|++..+ | +...+...+....+.. ++.. +..........+......+ ..
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l-~~ 145 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYL-TR 145 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHH-HH
Confidence 345566667777777777777777766543 1 1111111111111111 1111 1112222233333322222 22
Q ss_pred HhccCCHHHHHHHHHHhhHhcCCCCCH-HHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 037414 316 CSHTGLVEEGLRLFSSMWDDFAVRPDV-KHYTCMVDLLGRA-GRLDEALKLIESM 368 (577)
Q Consensus 316 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m 368 (577)
+. .|+.++|.+.++..+ ...|+. .....+-..+.+. +++++|.++|+..
T Consensus 146 l~-~~~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 146 LI-AAERERELEECQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HH-HHHHHHHHTTTSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HH-HHHHHHHHHHHHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 577788887777765 345553 3333344444444 6678888888877
No 155
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.13 E-value=1.6e-05 Score=67.74 Aligned_cols=98 Identities=13% Similarity=0.026 Sum_probs=72.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
.+..+...+.+.|++++|...|+.+++. .| +...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4556666777778888888888777643 34 4667777777888888888888888776 3344 455777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
...|++++|...|+++++..|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888887653
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.11 E-value=2e-05 Score=66.22 Aligned_cols=105 Identities=13% Similarity=0.061 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
..+..+...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555667778888888888888888753 2235677778888888999999999988887 3344 455778888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 385 RIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
...|++++|...++++++..|.++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999998887765444
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3e-05 Score=63.46 Aligned_cols=109 Identities=9% Similarity=-0.063 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACR 385 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 385 (577)
.+..+...+...|++++|...|+..++. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555566667777777777777777643 1234667777777777888888888877776 3344 4557777888888
Q ss_pred hcCCHHHHHHHHHHHHhcC------CCCchhHHHHHHHH
Q 037414 386 IHKNVDLAEMAAKSLLERQ------PQNPGHYVLLSNVY 418 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 418 (577)
..|++++|...++++++.+ |.++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8888888888888888887 76666555554443
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.09 E-value=0.0012 Score=63.84 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=51.5
Q ss_pred CHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChH--------HHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC--
Q 037414 255 SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGK--------KALDLFPMMLSSRVLPNRITFVSLLYACSHTGL-- 321 (577)
Q Consensus 255 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-- 321 (577)
+.++++++++++.+ +|...|+--...+.+.|.++ ++++.++++.+.. .-|...++.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 45555555555554 23344444444444434343 6666777666653 2355555555555555554
Q ss_pred -----HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC
Q 037414 322 -----VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR 357 (577)
Q Consensus 322 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 357 (577)
++++.+.++.++.. -+-|...|+-+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 56666666666532 22344555555555555444
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.09 E-value=3.3e-05 Score=63.03 Aligned_cols=98 Identities=6% Similarity=0.002 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY 418 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 418 (577)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3567777888899999999999999987 3334 6678888999999999999999999999999999999999999999
Q ss_pred hccCChhHHHHHHHHHhhCC
Q 037414 419 ANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g 438 (577)
...|++++|.+.+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999887643
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=4e-05 Score=66.10 Aligned_cols=108 Identities=12% Similarity=-0.010 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLG 382 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 382 (577)
+...+..+...+...|++++|...|+..++. .+.+...|..+...|.+.|++++|...|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777888888888888888888753 1235677888888899999999999988887 3345 5668889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
++...|++++|...++++++.+|+++..+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999988765443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.08 E-value=1.6e-05 Score=65.40 Aligned_cols=94 Identities=4% Similarity=-0.059 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hhHHH
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP-------GHYVL 413 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~ 413 (577)
..+.-+...|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..++++++.+|.+. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777888889999999988876 4445 566888888999999999999999999998877654 36777
Q ss_pred HHHHHhccCChhHHHHHHHHHhh
Q 037414 414 LSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+..+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888999999999999987654
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00011 Score=74.48 Aligned_cols=190 Identities=6% Similarity=-0.070 Sum_probs=139.3
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CC---h---------------hhHHHHHHHHHHcCChHHHHHHHHHhhhC-CCCCC
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQ--KN---V---------------ISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPN 305 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~--~~---~---------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~ 305 (577)
...+.+.|++++|.+.|..+.+ ++ . .++..+...|...|++++|.+.+.++... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999998753 11 0 13778899999999999999999987653 11122
Q ss_pred HH----HHHHHHHHHhccCCHHHHHHHHHHhhHh---cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-----C--C
Q 037414 306 RI----TFVSLLYACSHTGLVEEGLRLFSSMWDD---FAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-----S--V 370 (577)
Q Consensus 306 ~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-----~--~ 370 (577)
.. ..+.+-..+...|+.+++..++...... .+..+. ..++..+...|...|++++|..++++. + -
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 2233334455678999999988877542 122222 567788999999999999999998876 1 1
Q ss_pred CCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----chhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 371 EKD-EGLWGALLGACRIHKNVDLAEMAAKSLLERQ---PQN----PGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 371 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
+|. ..++..++..|...|++++|..++++.+... +.+ ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 3478888899999999999999999987653 222 24567788889999999999988876643
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.04 E-value=0.00016 Score=69.95 Aligned_cols=214 Identities=13% Similarity=0.102 Sum_probs=145.9
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHH
Q 037414 207 KVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQ---KNVISWSAMIAAYG 282 (577)
Q Consensus 207 g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 282 (577)
+..++|+++++++...++. +..+|+.--..+...| .+++++.+++.+.. ++...|+.-...+.
T Consensus 68 e~se~AL~lt~~~L~~nP~-------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3445677777666543322 3345555566666677 59999999998875 45667887777777
Q ss_pred Hc-C-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhhHhcCCCCCHHHHHHHHHHH
Q 037414 283 YH-G-QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVE--------EGLRLFSSMWDDFAVRPDVKHYTCMVDLL 352 (577)
Q Consensus 283 ~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 352 (577)
+. + ++++++++++++.+.. +-|...++.-.-.+.+.|..+ ++.+..+.+++. -.-+...|+-....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 76 7 8999999999999764 336666665444444444444 889999999864 234677787777777
Q ss_pred HHcCC-------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhc
Q 037414 353 GRAGR-------LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNV--------------------DLAEMAAKSLLER 403 (577)
Q Consensus 353 ~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~ 403 (577)
.+.++ ++++++.+++. ...| |...|+-+-..+.+.|.. ........++...
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 77776 68888888776 3345 677888777777766653 2223333333222
Q ss_pred C------CCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 404 Q------PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 404 ~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
. +.++.+...|+.+|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2 45667788899999999999999999999864
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.04 E-value=3e-05 Score=63.58 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=53.6
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCCCH----hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chhHHHHHHHHh
Q 037414 348 MVDLLGRAGRLDEALKLIESM-SVEKDE----GLWGALLGACRIHKNVDLAEMAAKSLLERQPQN---PGHYVLLSNVYA 419 (577)
Q Consensus 348 li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 419 (577)
+...+.+.|++++|.+.|++. ...|+. ..+..+..++...|++++|...++++++..|++ +.++..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 334455566666666666554 112322 255555566666666666666666666666666 555666666666
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
..|++++|...++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66677776666666654
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.96 E-value=7.3e-05 Score=73.14 Aligned_cols=93 Identities=4% Similarity=-0.079 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHH
Q 037414 307 ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGAC 384 (577)
Q Consensus 307 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 384 (577)
..+..+..++.+.|++++|...++..++. -+.+...|..+..+|...|++++|...|++. .+.| +...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34455555555555555555555555432 1223455555555566666666666655554 2233 334555555555
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 037414 385 RIHKNVDLA-EMAAKSLL 401 (577)
Q Consensus 385 ~~~g~~~~a-~~~~~~~~ 401 (577)
...|+.++| ...+++++
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666555 33445444
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=2.4e-05 Score=80.63 Aligned_cols=116 Identities=8% Similarity=-0.020 Sum_probs=85.3
Q ss_pred HHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDL 392 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 392 (577)
.+.+.|++++|.+.+++.++. -+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 455677888888888877653 1224677777888888888888888888776 3344 45678888888888888888
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHH--HhccCChhHHHHHHH
Q 037414 393 AEMAAKSLLERQPQNPGHYVLLSNV--YANAGRWQDVAKIRD 432 (577)
Q Consensus 393 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 432 (577)
|+..++++++..|.++..+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888888888777777 777888888888876
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=8.8e-05 Score=61.41 Aligned_cols=100 Identities=8% Similarity=-0.152 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 037414 305 NRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLG 382 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 382 (577)
+...+..+...+...|++++|...|...++. .+.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666777777777777777776643 1234566777777777777777777777766 2233 4557777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC
Q 037414 383 ACRIHKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 383 ~~~~~g~~~~a~~~~~~~~~~~p~ 406 (577)
.+...|++++|...++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888877766
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=6.4e-05 Score=77.00 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..|+++++.+|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888999999999999999887 3344 56789999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHH-HHHHHhh
Q 037414 420 NAGRWQDVAK-IRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~-~~~~m~~ 436 (577)
+.|+++++.+ .+..|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988775 4555543
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.95 E-value=4.3e-05 Score=62.42 Aligned_cols=96 Identities=10% Similarity=0.090 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chhHH
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN-------PGHYV 412 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 412 (577)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++.+..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777788888888888888776 2233 56678888888889999999999999998887665 77888
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhC
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999888763
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.95 E-value=4.5e-05 Score=64.55 Aligned_cols=90 Identities=14% Similarity=0.007 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC
Q 037414 347 CMVDLLGRAGRLDEALKLIESM-SVEKD-------------EGLWGALLGACRIHKNVDLAEMAAKSLLER-------QP 405 (577)
Q Consensus 347 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p 405 (577)
.....+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344455566666666666654 22222 238888888899999999999999999999 99
Q ss_pred CCchhH----HHHHHHHhccCChhHHHHHHHHHhh
Q 037414 406 QNPGHY----VLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 406 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++...| .....++...|++++|...|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 998899 9999999999999999999988765
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.94 E-value=5.7e-05 Score=59.73 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHhHHHHHHHH
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK---DEGLWGALLGA 383 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 383 (577)
.+..+...+...|++++|...++..++. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555566666666666666666543 1234555666666777777777777777665 2233 35567777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 037414 384 CRIH-KNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 384 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 408 (577)
+... |++++|.+.++++.+..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888887777777653
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00069 Score=68.46 Aligned_cols=261 Identities=6% Similarity=-0.053 Sum_probs=151.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCc----------------chHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCcH
Q 037414 131 GGFSKVADFINCFETFREFIRCGMQLDS----------------YTLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDIDQ 193 (577)
Q Consensus 131 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~ 193 (577)
..+.+.|++++|++.|....+....... ..+..+...|...|++++|.+.+..+.+.- -.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3455667777777777777664221110 125666777778888888887777665421 11111
Q ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC-
Q 037414 194 ----FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ- 268 (577)
Q Consensus 194 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~- 268 (577)
.+.+.+-..+...|+.++|..++++.... ..-. .....-..++..|...|...|++++|..++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-----AKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-----HHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----HHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 23334444555668888888887765321 0000 01111245778899999999999999999987642
Q ss_pred -------C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhhH
Q 037414 269 -------K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSS----RVLPN--RITFVSLLYACSHTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 269 -------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 334 (577)
+ .+..|..++..|...|++++|..++++.... +.+|. ...+..+...+...|++++|...|....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1346888899999999999999999887643 11222 23556666778889999999888877754
Q ss_pred hc---CCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHhC---C--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037414 335 DF---AVRPDVKH----YTCMVDLLGRAGRLDEALKLIESM---S--VEKDEGLWGALLGACRIHKNVDLAEMAAKS 399 (577)
Q Consensus 335 ~~---~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m---~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 399 (577)
.+ +....... ...++-.....+..+.....+... . ..|+...+..++.++. .+++.........
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 245 SYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQ 320 (434)
T ss_dssp HHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 32 11111111 111112222334444444555443 1 1234456666666654 3445444444443
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.92 E-value=1.1e-05 Score=65.40 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHH
Q 037414 355 AGRLDEALKLIESM-SV---EK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAK 429 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 429 (577)
.|++++|+..|++. .. .| +...|..+...+...|++++|+..++++++.+|+++..+..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666555 32 13 233556666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 037414 430 IRDLMTR 436 (577)
Q Consensus 430 ~~~~m~~ 436 (577)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.90 E-value=9.4e-06 Score=72.68 Aligned_cols=150 Identities=8% Similarity=-0.054 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc--------------
Q 037414 96 NKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDS-------------- 158 (577)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------- 158 (577)
+..+......|+++.|.+.|+.-.+. ....|..+...+.+.|++++|++.|++..+.... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~ 86 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNI 86 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHH
Confidence 33444455566777777666543321 3446777788888999999999999988874211 22
Q ss_pred --chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCC
Q 037414 159 --YTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKF 236 (577)
Q Consensus 159 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~ 236 (577)
..+..+..++...|++++|...+...++.. +.+...+..+..+|...|++++|.+.|++..+.+
T Consensus 87 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------------- 152 (198)
T 2fbn_A 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN------------- 152 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-------------
Confidence 567777778888899999999999888874 5567888888899999999999999888765422
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAR 260 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~ 260 (577)
+.+..++..+..++...++.+++.
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 124456666666666666665554
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.90 E-value=0.00017 Score=58.84 Aligned_cols=103 Identities=11% Similarity=0.006 Sum_probs=69.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHH
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPD-VKHYTCMVDLLGRAGRLDEALKLIESM-SVEKD----EGLWGALLGACR 385 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~ 385 (577)
+...+...|++++|...|+.+++...-.+. ...+..+...|.+.|++++|...|++. ...|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444556677777777777777653211111 145666777778888888888887776 22343 446777777888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchhHHHH
Q 037414 386 IHKNVDLAEMAAKSLLERQPQNPGHYVLL 414 (577)
Q Consensus 386 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 414 (577)
..|++++|...++++++..|+++......
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 88999999999999988888876554433
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=9.1e-05 Score=75.93 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=100.2
Q ss_pred HHhccCCHHHHHHHHHHhhHhcC--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHh-HHH
Q 037414 315 ACSHTGLVEEGLRLFSSMWDDFA--VRP----DVKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKDEG-LWG 378 (577)
Q Consensus 315 a~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~ 378 (577)
.+...|++++|..++++.++... +.| ...+++.|..+|...|++++|+.++++. +..|+.. +++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678999999999888765321 222 2578889999999999999999988875 3345443 889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---hHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLE-----RQPQNPG---HYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
.|...|...|++++|+.+++++++ ++|++|. ....|..++...+++++|+.++..+++.-.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999875 4677664 4567888889999999999999999876443
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.90 E-value=0.00019 Score=58.45 Aligned_cols=106 Identities=10% Similarity=0.022 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CC----CCC----HhHHHH
Q 037414 309 FVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SV----EKD----EGLWGA 379 (577)
Q Consensus 309 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 379 (577)
+..+...+...|++++|...++..++. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444445555555555555555555432 1223445555555666666666666666554 11 112 446666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 037414 380 LLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNV 417 (577)
Q Consensus 380 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 417 (577)
+...+...|++++|...++++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 77777777888888888887777776 44444444443
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.88 E-value=5.7e-05 Score=64.95 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=55.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3477788888889999999999999999999999999999999999999999999998887653
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.88 E-value=0.00011 Score=62.32 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCch
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM----SVEKD----EGLWGALLGACRIHKNVDLAEMAAKSLLERQP------QNPG 409 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 409 (577)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++.++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555566666666666655554 00111 23556666667777788888777777765421 1234
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 410 HYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888888888888888876653
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.84 E-value=0.00012 Score=72.65 Aligned_cols=137 Identities=10% Similarity=-0.017 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHH
Q 037414 272 ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVD 350 (577)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 350 (577)
..|..+...+.+.|++++|+..|++.++. .|+. ......+ ... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~-------~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChH-------HHH---HHHHHHHHHHHHHHH
Confidence 34666777777788888888877776642 0000 0000111 110 1122 3567788888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVA 428 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 428 (577)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|+..+++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 5556 56688889999999999999999999999999999999999999998888887776
Q ss_pred HH
Q 037414 429 KI 430 (577)
Q Consensus 429 ~~ 430 (577)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.83 E-value=0.00016 Score=74.39 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
..+...|.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3345567788899999999888754 356788888888999999999999998888763 335667778888888889
Q ss_pred CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 037414 321 LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDL--LGRAGRLDEALKLIE 366 (577)
Q Consensus 321 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 366 (577)
++++|.+.+++.++...- +...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988888754222 23344444444 777888888888887
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=0.0001 Score=62.54 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC-----CCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCC-CCHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ-----KNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVL-PNRITF 309 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 309 (577)
..++..+...|...|++++|...+++..+ .+. ..+..+...|...|++++|...+++..+.... ++..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-- 86 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA-- 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH--
Confidence 34556666666666666666666665542 111 24444555555555555555555554432000 0000
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHhHHHHHH
Q 037414 310 VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-------SVEK-DEGLWGALL 381 (577)
Q Consensus 310 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll 381 (577)
.....+..+...+...|++++|.+.+++. +..+ ....+..+.
T Consensus 87 ------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 136 (164)
T 3ro3_A 87 ------------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 136 (164)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHH
Confidence 00223344444555555555555554443 1001 122455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 037414 382 GACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
..+...|++++|...+++.++.
T Consensus 137 ~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 137 NAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 6667777777777777766654
No 183
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.82 E-value=0.00011 Score=60.28 Aligned_cols=102 Identities=10% Similarity=0.053 Sum_probs=66.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC--CCCC----HHHHH
Q 037414 240 VILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR--VLPN----RITFV 310 (577)
Q Consensus 240 ~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~ 310 (577)
...+..|...|.+.|++++|...|++..+ .+...|+.+..+|.+.|++++|++.|++.++.. ..++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34566677788888888888888877653 345667777778888888888888877776531 1111 12455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHH
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKH 344 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 344 (577)
.+..++...|++++|.+.|+..++. .|+...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~ 118 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE---FRDPEL 118 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHH
Confidence 5666666777777777777766542 355443
No 184
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.82 E-value=0.0018 Score=62.36 Aligned_cols=191 Identities=10% Similarity=0.041 Sum_probs=109.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHHHH
Q 037414 209 IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAMIAAYGY 283 (577)
Q Consensus 209 ~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 283 (577)
++++..+++.+...++ -+..+|+--...+.+.| .++++..+++++.+ +|...|+--...+..
T Consensus 90 l~~EL~~~~~~L~~~P-------------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~ 156 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-------------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ 156 (331)
T ss_dssp HHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4566666666654322 23445555555566666 47888888888875 566777777777777
Q ss_pred cCC-hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHH
Q 037414 284 HGQ-GKKALDLFPMMLSSRVLPNRITFVSLLYACSHT--------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCM 348 (577)
Q Consensus 284 ~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 348 (577)
.|. ++++++.++++.+.. +-|...++.....+.+. +.++++.+.+...+.. -+-|...|+-+
T Consensus 157 l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~ 233 (331)
T 3dss_A 157 AAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYH 233 (331)
T ss_dssp TTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 787 588888888888764 33555665544444333 3466777777766643 22244555544
Q ss_pred HHHHHHc-----------CCHHHHHHHHHhC-CCCCCHhHHHHHHHH-----HHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 349 VDLLGRA-----------GRLDEALKLIESM-SVEKDEGLWGALLGA-----CRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 349 i~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
-..+.+. +.++++++.++++ ...||. .|..+-.+ ....+..++....+.++.+.+|....-|
T Consensus 234 r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y 312 (331)
T 3dss_A 234 RWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 312 (331)
T ss_dssp HHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHH
Confidence 4444443 3455666666555 344543 23321111 1124555566666666666666655555
Q ss_pred HHHHH
Q 037414 412 VLLSN 416 (577)
Q Consensus 412 ~~l~~ 416 (577)
.-+..
T Consensus 313 ~d~~~ 317 (331)
T 3dss_A 313 DDLRS 317 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.80 E-value=0.00011 Score=59.76 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcC
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHK 388 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 388 (577)
.+...+.+.|++++|...|+..++. -+.+...|..+..++.+.|++++|+..|++. ...| +...|..+...+...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445566677777777777777643 1224566666777777777777777777766 3344 4456777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCCc
Q 037414 389 NVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 389 ~~~~a~~~~~~~~~~~p~~~ 408 (577)
++++|...++++++.+|.+.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 78888888877777777643
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.77 E-value=0.0033 Score=60.47 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=130.6
Q ss_pred HHHHHHHHHhccC---CChhhHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCC-HHHHHHHH
Q 037414 256 IDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQ--GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGL-VEEGLRLF 329 (577)
Q Consensus 256 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 329 (577)
+++++.+++.+.. ++..+|+.-...+...|+ +++++++++++.+.. +-|...++.-.-.+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 6788888888764 567788888788888884 899999999999864 3466777766666667777 68999999
Q ss_pred HHhhHhcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc------
Q 037414 330 SSMWDDFAVRPDVKHYTCMVDLLGRA--------------GRLDEALKLIESM-SVEK-DEGLWGALLGACRIH------ 387 (577)
Q Consensus 330 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~------ 387 (577)
..+++. -+-+...|+-....+.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999864 234566676666555554 4578888888876 3345 667887555555444
Q ss_pred -----CCHHHHHHHHHHHHhcCCCCchhHHHHHHH---HhccCChhHHHHHHHHHhhCC
Q 037414 388 -----KNVDLAEMAAKSLLERQPQNPGHYVLLSNV---YANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 388 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~g 438 (577)
+.++++++.++++++.+|++.-.+..++.. ....|..+++...+.++.+-+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457899999999999999986554444332 234677888888888887643
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.74 E-value=4.7e-05 Score=74.54 Aligned_cols=148 Identities=10% Similarity=-0.010 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 271 VISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
...|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345667777777888888888888887763 344332 223344444332221 136677788
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHH-hccCChhHH
Q 037414 351 LLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVY-ANAGRWQDV 427 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 427 (577)
+|.+.|++++|...+++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888876 3344 5668888888899999999999999999988888888888777773 455667777
Q ss_pred HHHHHHHhhCC
Q 037414 428 AKIRDLMTRRR 438 (577)
Q Consensus 428 ~~~~~~m~~~g 438 (577)
.+.+..|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 77887776543
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.73 E-value=4.3e-05 Score=61.72 Aligned_cols=91 Identities=7% Similarity=0.003 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHhhHhcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAV-RP-DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
.|++++|...|++.++. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776532 10 12 3456667777777888888888887776 3334 4557777778888888888888
Q ss_pred HHHHHHHhcCCCCchh
Q 037414 395 MAAKSLLERQPQNPGH 410 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~ 410 (577)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877654
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=0.0022 Score=67.25 Aligned_cols=170 Identities=10% Similarity=0.023 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCC----------hHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 254 GSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQ----------GKKALDLFPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 254 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
..-++|.+.++++.+ .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345678999998875 345678877777777777 899999999999864 335667777777778888
Q ss_pred --CHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc--------
Q 037414 321 --LVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG-RLDEALKLIESM-SVEK-DEGLWGALLGACRIH-------- 387 (577)
Q Consensus 321 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-------- 387 (577)
+++++.+.++.+++. -+-+...|+.-.-.+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999864 2345777877777788888 899999999988 4455 677888877776653
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhH
Q 037414 388 ------KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQD 426 (577)
Q Consensus 388 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 426 (577)
+.++++.+.++++++.+|.+..+|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.64 E-value=0.00016 Score=62.11 Aligned_cols=67 Identities=24% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++.+|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 457777888899999999999988877 3345 566888899999999999999999999999999987
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.63 E-value=0.00012 Score=61.98 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-C-------CCCCHh-HH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchh
Q 037414 344 HYTCMVDLLGRAGRLDEALKLIESM-S-------VEKDEG-LW----GALLGACRIHKNVDLAEMAAKSLLERQPQNPGH 410 (577)
Q Consensus 344 ~~~~li~~~~~~g~~~~A~~~~~~m-~-------~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 410 (577)
.|..+..++.+.|++++|+..+++. . +.|+.. .| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666777777766666554 3 377654 88 889999999999999999999999999987654
Q ss_pred H
Q 037414 411 Y 411 (577)
Q Consensus 411 ~ 411 (577)
+
T Consensus 139 ~ 139 (159)
T 2hr2_A 139 T 139 (159)
T ss_dssp C
T ss_pred H
Confidence 3
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.59 E-value=0.00032 Score=54.68 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=59.7
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+...|..+...+...|++++|+..++++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56688889999999999999999999999999999999999999999999999999999887653
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.59 E-value=0.0002 Score=70.07 Aligned_cols=151 Identities=7% Similarity=-0.007 Sum_probs=81.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ--KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
....+..+...|.+.|++++|...|++..+ |+... +...|+.+++...+. ...|..+..+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 456677888889999999999999998764 33221 222333444433221 13567788888
Q ss_pred hccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHH-HHhcCCHHHH
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDE-GLWGALLGA-CRIHKNVDLA 393 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~-~~~~g~~~~a 393 (577)
.+.|++++|...++..++. -+.+...|..+..+|...|++++|.+.|++. .+.|+. ..+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988753 2235778888888999999999999999887 555643 355544444 3445667888
Q ss_pred HHHHHHHHhcCCCCc
Q 037414 394 EMAAKSLLERQPQNP 408 (577)
Q Consensus 394 ~~~~~~~~~~~p~~~ 408 (577)
...+.++++..|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 888999988887764
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00016 Score=57.17 Aligned_cols=91 Identities=11% Similarity=-0.062 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chhHH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN------PGHYV 412 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 412 (577)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++..|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556677778888889999998888876 3334 56688888888999999999999999999999988 66677
Q ss_pred HHHHHHhccCChhHHHHHH
Q 037414 413 LLSNVYANAGRWQDVAKIR 431 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~ 431 (577)
.+..++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777766665444
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.57 E-value=0.00044 Score=52.26 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 342 VKHYTCMVDLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 342 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777788888888888888776 2233 55678888888889999999999999999999988888888887776
Q ss_pred ccC
Q 037414 420 NAG 422 (577)
Q Consensus 420 ~~g 422 (577)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.56 E-value=0.00023 Score=56.92 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=63.4
Q ss_pred HHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 360 EALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 360 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|.++..|..+..+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3345 56688888888999999999999999999999999889999999999999999999999887653
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.52 E-value=0.00057 Score=69.84 Aligned_cols=129 Identities=6% Similarity=-0.034 Sum_probs=102.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----------------cchHHHHHHHHhcCCChHHHHHHHHHHH
Q 037414 122 DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD----------------SYTLPFVIRACRDRKDIVMGRLIHDIVL 185 (577)
Q Consensus 122 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 185 (577)
....|..+...|.+.|++++|+..|++..+. .|+ ...|..+..++.+.+++++|...+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456888888999999999999999998874 333 3678888888999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHH-HHH
Q 037414 186 KSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSARE-IFD 264 (577)
Q Consensus 186 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~-~~~ 264 (577)
+.. +.+...+..+..+|...|++++|...|++..+.++ .+..++..+..++.+.|+.++|.+ .+.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-------------~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-------------QNKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 55788899999999999999999999998876432 245677788888888888887753 444
Q ss_pred hc
Q 037414 265 RM 266 (577)
Q Consensus 265 ~~ 266 (577)
.|
T Consensus 411 ~~ 412 (457)
T 1kt0_A 411 NM 412 (457)
T ss_dssp HC
T ss_pred HH
Confidence 44
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.40 E-value=0.00057 Score=70.00 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=86.4
Q ss_pred HHHHcCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hhHH
Q 037414 351 LLGRAGRLDEALKLIESM---------SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLER-----QPQNP---GHYV 412 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~ 412 (577)
.+...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++. +|++| .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 223433 38999999999999999999999998753 56655 4688
Q ss_pred HHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 037414 413 LLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482 (577)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 482 (577)
.|..+|..+|++++|..++++..+.-.. +=...||...++..++.....+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999877642111 111358888888877776665554
No 199
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.36 E-value=0.0016 Score=64.33 Aligned_cols=118 Identities=8% Similarity=-0.046 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCC
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ-------------------KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSR 301 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 301 (577)
..+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4567788999999999999999987754 123445555566666666666666666665532
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 037414 302 VLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVKHYTCMVDLLGRAGRLDEAL 362 (577)
Q Consensus 302 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 362 (577)
+-+...+..+..+|...|++++|...|+..++. .| +...+..+...+.+.++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 223445555555666666666666666655432 23 3344444444555555444443
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.25 E-value=0.0002 Score=60.42 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCchhHHHHHHHHhcc
Q 037414 354 RAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKN----------VDLAEMAAKSLLERQPQNPGHYVLLSNVYANA 421 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 421 (577)
+.+++++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666655 2334 44455555555555544 57999999999999999999999999999987
Q ss_pred C-----------ChhHHHHHHHHHhhCC
Q 037414 422 G-----------RWQDVAKIRDLMTRRR 438 (577)
Q Consensus 422 g-----------~~~~A~~~~~~m~~~g 438 (577)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999888654
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.21 E-value=0.00063 Score=68.55 Aligned_cols=116 Identities=11% Similarity=0.131 Sum_probs=86.1
Q ss_pred HHHHHHcCCHHHHHHHHHhC------CCCC---C-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hh
Q 037414 349 VDLLGRAGRLDEALKLIESM------SVEK---D-EGLWGALLGACRIHKNVDLAEMAAKSLLER-----QPQNP---GH 410 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~ 410 (577)
+..+.+.|++++|++++++. -+.| + ..+++.|...|...|++++|+.+++++++. +|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466788889998888765 1122 2 238888889999999999999999988753 45554 46
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 037414 411 YVLLSNVYANAGRWQDVAKIRDLMTRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLE 482 (577)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 482 (577)
++.|..+|..+|++++|..++++..+--.. +-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999877642110 112368999998888888877765
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0013 Score=51.64 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=61.0
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+...|..+...+...|++++|+..++++++..|.++..+..+..+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788888999999999999999999999999999999999999999999999999999988654
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.17 E-value=0.0025 Score=48.70 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=59.3
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 372 KDEGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+|...+..+..++...++ .++|..+++++++.+|+++.+...+...+.+.|++++|...|+.+.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 466677777777765554 79999999999999999999999999999999999999999999987654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.11 E-value=0.006 Score=50.55 Aligned_cols=85 Identities=7% Similarity=-0.084 Sum_probs=38.7
Q ss_pred HHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc----cCC
Q 037414 352 LGRAGRLDEALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYAN----AGR 423 (577)
Q Consensus 352 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 423 (577)
|...+.+++|.++|++.-...+...+..|...|.. .++.++|...+++..+. .++.++..|..+|.. .++
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcC
Confidence 33333344444444433111233344444444443 44555555555555444 233445555555555 455
Q ss_pred hhHHHHHHHHHhhCC
Q 037414 424 WQDVAKIRDLMTRRR 438 (577)
Q Consensus 424 ~~~A~~~~~~m~~~g 438 (577)
+++|.+.+++..+.|
T Consensus 113 ~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 113 EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555555555554443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.98 E-value=0.0028 Score=47.59 Aligned_cols=64 Identities=20% Similarity=0.217 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 374 EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 374 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
...|..+...+...|++++|+..++++++..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577888888999999999999999999999999999999999999999999999999988764
No 206
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.87 E-value=0.095 Score=41.99 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=100.2
Q ss_pred HHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 037414 282 GYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEA 361 (577)
Q Consensus 282 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 361 (577)
.-.|..++..++..+.... .+..-|+.++.-....-+-+-..+.++.+-+-+ | ...+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----D----------is~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----C----------cHhhhcHHHH
Confidence 3456667777777766643 244555656655555555555566666553222 2 2357777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 362 LKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 362 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
...+-.++ .+.......+......|.-+.-.++...++..++++++...-+.++|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 77777775 345566777888899999999999999987788888999999999999999999999999999999974
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.003 Score=63.50 Aligned_cols=83 Identities=11% Similarity=0.056 Sum_probs=66.2
Q ss_pred HcCCHHHHHHHHHhC---------CCCCCH-hHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCc---hhHHHHH
Q 037414 354 RAGRLDEALKLIESM---------SVEKDE-GLWGALLGACRIHKNVDLAEMAAKSLLER-----QPQNP---GHYVLLS 415 (577)
Q Consensus 354 ~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~ 415 (577)
..|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|++| .+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888887764 223333 48899999999999999999999998753 45555 4688999
Q ss_pred HHHhccCChhHHHHHHHHHhh
Q 037414 416 NVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~ 436 (577)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.86 E-value=0.019 Score=47.39 Aligned_cols=113 Identities=12% Similarity=-0.070 Sum_probs=87.8
Q ss_pred CChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHH----cCCHHH
Q 037414 285 GQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGR----AGRLDE 360 (577)
Q Consensus 285 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 360 (577)
+++++|++.|++..+.| .|+.. +-..|...+.+++|.+.|+...+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999988887 34433 666677777888899999988653 356777777788877 789999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 037414 361 ALKLIESMSVEKDEGLWGALLGACRI----HKNVDLAEMAAKSLLERQPQ 406 (577)
Q Consensus 361 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~ 406 (577)
|.++|++.-..-+...+..|...|.. .++.++|...+++..+.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999887323567778888888888 78999999999999887643
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.80 E-value=0.0083 Score=60.28 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=72.7
Q ss_pred ccCCHHHHHHHHHHhhHhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHh-HHHHHH
Q 037414 318 HTGLVEEGLRLFSSMWDDF--AVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKDEG-LWGALL 381 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~-~~~~ll 381 (577)
..|++++|..++++.++.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999888776532 12232 477889999999999999999998876 3345544 899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCchh
Q 037414 382 GACRIHKNVDLAEMAAKSLLE-----RQPQNPGH 410 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 410 (577)
..|...|++++|+.+++++++ .+|++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999876 36777654
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.78 E-value=0.0015 Score=55.02 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhc
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGR----------LDEALKLIESM-SVEK-DEGLWGALLGACRIH 387 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 387 (577)
+.+++|.+.++..++. -+.+...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3445555555555432 11234445545455554443 34677666665 4455 344677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 388 -----------KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 388 -----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|++++|+..|+++++.+|++. .|...+.. .++|.++.-.+...+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCcccccc
Confidence 589999999999999999985 33333332 234556655555543
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.77 E-value=0.12 Score=56.73 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=26.5
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 250 YAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 250 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+...|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 44556666665555444 233456666666666666666666666554
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.76 E-value=0.014 Score=58.61 Aligned_cols=101 Identities=12% Similarity=-0.047 Sum_probs=75.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhc--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCCHh-
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDF--AVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM---------SVEKDEG- 375 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~~- 375 (577)
.+..+.+.|++++|..++++.++.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667788999999888886432 12232 467888888999999999999888776 3345443
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchhHH
Q 037414 376 LWGALLGACRIHKNVDLAEMAAKSLLE-----RQPQNPGHYV 412 (577)
Q Consensus 376 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 412 (577)
+++.|...|...|++++|+.+++++++ .+|++|.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888999999999999999999999875 4687765443
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.67 E-value=0.0073 Score=47.88 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+.++|...|+..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555566666666555555432 2233445555555555555555555555554
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.56 E-value=0.0069 Score=46.82 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHHcCChHHHHHHHHHhh
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQ---KNVISWSAMIAAYGYHGQGKKALDLFPMML 298 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 298 (577)
+..++..+...|.+.|++++|...|++..+ .+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555666666666666666666665542 234455556666666666666666665544
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.13 Score=56.40 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=92.0
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 037414 131 GGFSKVADFINCFE-TFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVI 209 (577)
Q Consensus 131 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 209 (577)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 33445677777766 4311 1 1122236666667777777777655421 11 113345667888
Q ss_pred HHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHH
Q 037414 210 DDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKK 289 (577)
Q Consensus 210 ~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (577)
++|.++.+.+. +...|..|..++.+.|+++.|.+.|..+.+ |..+...|...|+.+.
T Consensus 669 ~~A~~~~~~~~------------------~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 669 TLARDLLTDES------------------AEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHHHHHTTCC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhC------------------cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHH
Confidence 88888876654 345677788888888888888877776644 2333333444444443
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 290 ALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 290 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
..++ .......|+.+.|...+... | -+...+++|.+.+++++|..+-+..+
T Consensus 726 ~~~~-------------------~~~a~~~~~~~~A~~~~~~~----g------~~~~a~~~~~~~~~~~~A~~lA~~~~ 776 (814)
T 3mkq_A 726 LVTL-------------------AKDAETTGKFNLAFNAYWIA----G------DIQGAKDLLIKSQRFSEAAFLGSTYG 776 (814)
T ss_dssp HHHH-------------------HHHHHHTTCHHHHHHHHHHH----T------CHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHH-------------------HHHHHHcCchHHHHHHHHHc----C------CHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3333 23333344444444443322 1 01233444555566677776666653
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.45 E-value=0.1 Score=50.52 Aligned_cols=137 Identities=12% Similarity=-0.012 Sum_probs=63.6
Q ss_pred CChhhHHHHHHHHH--HcCC---hHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhc---cC-----CHHHHHHHHHHhhH
Q 037414 269 KNVISWSAMIAAYG--YHGQ---GKKALDLFPMMLSSRVLPN-RITFVSLLYACSH---TG-----LVEEGLRLFSSMWD 334 (577)
Q Consensus 269 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~~ 334 (577)
.+...|...+.+.. ..++ ..+|..+|++.++. .|+ ...+..+.-+|.- .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46677777776543 3333 46888889888874 555 2344433333320 00 00000111111100
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 335 DFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 335 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
....+.+...|.++.-.+...|++++|...+++. ...|+...|..+...+...|+.++|.+.+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0011233444444444444445555555555554 223444444444444555555555555555555555543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.43 E-value=0.0083 Score=45.94 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEG-LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
..+.+.|++++|.+.|++. ...| +.. .|..+..++...|++++|...++++++.+|+++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3455556666666666554 2223 334 555555555666666666666666666666555444
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.39 E-value=0.019 Score=43.87 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=50.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHhc
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRP-DVK-HYTCMVDLLGRAGRLDEALKLIESM-SVEKDEG-LWGALLGACRIH 387 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~ 387 (577)
....+...|++++|...++..++. .| +.. .+..+...|...|++++|.+.|++. ...|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 344566677777777777777643 23 345 6667777777777777777777766 3334322 2211
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 037414 388 KNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~ 407 (577)
+.+.++...+++..+.+|++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 34455555565555555443
No 219
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.34 E-value=0.093 Score=54.81 Aligned_cols=172 Identities=9% Similarity=0.009 Sum_probs=121.4
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC----------HHHHHHHHhhCCCCChhHHHHHHhcCCCCcchh
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKV----------IDDARQLFDQMPTRDLVTWTVMIGANKFLLDVI 241 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~ 241 (577)
...++|.+.++.+++.. +-+..+|+.--.++.+.|+ ++++.+.++++.+.++- +..
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-------------~y~ 108 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-------------SYG 108 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-------------CHH
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-------------CHH
Confidence 33456777777777765 4455666666556655555 88888888887654332 445
Q ss_pred hHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHHHHcC-ChHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 037414 242 LGTAVIDMYAKCG--SIDSAREIFDRMRQ---KNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITFVSLLYA 315 (577)
Q Consensus 242 ~~~~Li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 315 (577)
+|+--...+.+.| +++++.+.++++.+ +|...|+--...+.+.| .++++++.++++.+.. +-|...|+.....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~l 187 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHH
Confidence 6666677777888 77999999999875 56778888888888888 8999999999998864 3366677665555
Q ss_pred Hhcc--------------CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 037414 316 CSHT--------------GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 316 ~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
+.+. +.++++.+.+...+.. -+-+...|..+-..+.+.++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 5442 5578888888888753 22346777777777777776444
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.027 Score=46.84 Aligned_cols=65 Identities=8% Similarity=-0.047 Sum_probs=51.5
Q ss_pred CCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 372 KDEGLWGALLGACRIHK---NVDLAEMAAKSLLERQ-P-QNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++..+.-.+..++.+.+ +.++++.+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666667777777777 5668888888888887 6 3567788888888999999999999888875
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.22 Score=42.47 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=93.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGL 326 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 326 (577)
.+...++|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... |..+.-.|...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34566899999999998877 5677899999999999999999999998764 344555566678877766
Q ss_pred HHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 327 RLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 327 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
++-+....+ | -++.....+.-.|+++++.+++.+.+.-|... .....+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 655544322 2 23445556667899999999999887433322 2234467777787776655
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.71 E-value=0.12 Score=49.85 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 270 NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
+...|.++...+...|++++|...++++...+ |+...|..+-..+.-.|+.++|.+.+++..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444444455555555555555543 444444444444555555555555555544
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.57 E-value=0.061 Score=49.89 Aligned_cols=87 Identities=13% Similarity=0.177 Sum_probs=69.7
Q ss_pred HHHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chhHHHHHHHHhcc-CChhH
Q 037414 358 LDEALKLIESM-SVEKD---EGLWGALLGACRI-----HKNVDLAEMAAKSLLERQPQN-PGHYVLLSNVYANA-GRWQD 426 (577)
Q Consensus 358 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 426 (577)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|++.|+++++++|+. ..+++.....++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666655 55666 4578888888888 599999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 037414 427 VAKIRDLMTRRRLKKIPG 444 (577)
Q Consensus 427 A~~~~~~m~~~g~~~~~~ 444 (577)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998877654453
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.41 E-value=0.093 Score=39.74 Aligned_cols=68 Identities=18% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 037414 340 PDVKHYTCMVDLLGRAGR---LDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQN 407 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 407 (577)
.+...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|+..++++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456666777776654444 68888888776 4455 44566777777888888888888888888888873
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.37 E-value=0.84 Score=36.64 Aligned_cols=148 Identities=14% Similarity=0.022 Sum_probs=94.6
Q ss_pred hHHHHHHH--HhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC-ChhHHHHHHhcCCC
Q 037414 160 TLPFVIRA--CRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR-DLVTWTVMIGANKF 236 (577)
Q Consensus 160 t~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~i~~~g~ 236 (577)
+...|+.+ ..-.|.++++.++..+..++. +..-||..|--....-+-+-..++++.+-.- |
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD------------- 70 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD------------- 70 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcC-------------
Confidence 44455555 445688888888888887753 4444555554444445555555555554321 1
Q ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 037414 237 LLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYAC 316 (577)
Q Consensus 237 ~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 316 (577)
...||++......+-.+- .+....+..++.+...|.-++-.+++..+.. +.+|++.....+..||
T Consensus 71 -------------is~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay 135 (172)
T 1wy6_A 71 -------------LDKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANAL 135 (172)
T ss_dssp -------------GGGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHH
T ss_pred -------------cHhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHH
Confidence 123444444444444432 2344556677888888988888888888644 3577788888888899
Q ss_pred hccCCHHHHHHHHHHhhHhcCCC
Q 037414 317 SHTGLVEEGLRLFSSMWDDFAVR 339 (577)
Q Consensus 317 ~~~g~~~~a~~~~~~m~~~~~~~ 339 (577)
.+.|+..++.+++.++.++ |++
T Consensus 136 ~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 136 RRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHhcchhhHHHHHHHHHHh-hhH
Confidence 9999999999998888765 653
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.32 E-value=0.12 Score=39.95 Aligned_cols=74 Identities=15% Similarity=0.049 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhH
Q 037414 341 DVKHYTCMVDLLGRAGRLDEALKLIESM-----S----VEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHY 411 (577)
Q Consensus 341 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 411 (577)
+..-+-.|...+.+.|+++.|..+|+.. + -.+...++..|..++.+.|+++.|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444456666677777777777777664 1 012455788888999999999999999999999999987664
Q ss_pred HHH
Q 037414 412 VLL 414 (577)
Q Consensus 412 ~~l 414 (577)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.9 Score=38.68 Aligned_cols=130 Identities=16% Similarity=0.153 Sum_probs=93.4
Q ss_pred HHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHH
Q 037414 201 DMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAA 280 (577)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 280 (577)
+...++|+++.|.++.+++. +...|..|.+.....|+++-|.+.|....+ +..+.-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~L 69 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------------------DSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFL 69 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHH
Confidence 45567999999999987763 455788899999999999999999999875 4555666
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDE 360 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 360 (577)
|.-.|+.++-.++-+.....| + ++.....+...|+++++.++|.+. |.-|.... .....|..+.
T Consensus 70 y~~tg~~e~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~----~r~~eA~~------~A~t~g~~~~ 133 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEG----GSLPLAYA------VAKANGDEAA 133 (177)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHH------HHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHC----CChHHHHH------HHHHcCcHHH
Confidence 777888877776666555544 1 344445566789999999999766 33232211 1223577888
Q ss_pred HHHHHHhCC
Q 037414 361 ALKLIESMS 369 (577)
Q Consensus 361 A~~~~~~m~ 369 (577)
|.++.++++
T Consensus 134 a~~~~~~~~ 142 (177)
T 3mkq_B 134 ASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888888874
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.39 E-value=0.0046 Score=61.19 Aligned_cols=143 Identities=11% Similarity=0.100 Sum_probs=85.7
Q ss_pred ccchhhHHHhhccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccC---hHHHHHHHHHHHHcCCCCCHHHHH
Q 037414 20 FSSSTTAAIALEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRN---IFQIRQVHAQIVAGGTLTNLIVAN 96 (577)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~---~~~a~~~~~~~~~~g~~~~~~~~~ 96 (577)
..-|..+..+....|+..+|++-|-+.. |+..|..++.++.+ .++....+...++. ..++.+=+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~-----------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDt 120 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET 120 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS-----------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC-----------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHH
Confidence 3458889999999999999999876664 34557778888876 44444444433333 34556668
Q ss_pred HHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHC--------------------CCCC
Q 037414 97 KLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRC--------------------GMQL 156 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p 156 (577)
.|+-+|++.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+... .-.-
T Consensus 121 eLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999998776444322 133333444444444444444444443332110 0012
Q ss_pred CcchHHHHHHHHhcCCChHHHH
Q 037414 157 DSYTLPFVIRACRDRKDIVMGR 178 (577)
Q Consensus 157 ~~~t~~~ll~~~~~~~~~~~a~ 178 (577)
+..||-.+-.+|...+.+..|.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTT
T ss_pred ChhHHHHHHHHHhCchHHHHHH
Confidence 5566766666776666665543
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.12 E-value=0.24 Score=41.13 Aligned_cols=87 Identities=17% Similarity=0.053 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHhHHHHHHHHHHhcCCHHHHH
Q 037414 322 VEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAG---RLDEALKLIESM-SVE-K--DEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
+..+++.|.+..+. + .++..+...+.-++.+.+ +.+++..+++.. ... | +...+-.|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444445444332 2 255555555666666666 445666666655 112 3 2335555667789999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 037414 395 MAAKSLLERQPQNPGH 410 (577)
Q Consensus 395 ~~~~~~~~~~p~~~~~ 410 (577)
+.++.+++.+|++..+
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999988643
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.56 E-value=0.39 Score=38.33 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=13.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
-++.+.|+++.|.+.++.+++.+|.+.
T Consensus 82 vg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 344455555555555555555555443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.70 E-value=0.54 Score=36.17 Aligned_cols=65 Identities=9% Similarity=-0.055 Sum_probs=54.1
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchhHHHHHHHHhccCChhHHHHHHHHHhhC
Q 037414 373 DEGLWGALLGACRIHKNVDLAEMAAKSLLERQ-------PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRR 437 (577)
Q Consensus 373 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 437 (577)
+..-+-.|...+...|+++.|...++.+++.. +..+..+..|..+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445678888999999999999999998753 234567899999999999999999999988753
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.66 E-value=4.6 Score=32.78 Aligned_cols=65 Identities=6% Similarity=-0.077 Sum_probs=41.9
Q ss_pred CCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 372 KDEGLWGALLGACRIHKN---VDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 372 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
|+..+--.+..++.+..+ ..+++.+++.+.+..|. .......|+-+|.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445555543 45677777777776664 334556677778888888888888877765
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=91.65 E-value=0.015 Score=57.55 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcC
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDR 171 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 171 (577)
+.+|+.|..++.+.+++.+|+.-| ++..|+..|..+|.+..+.|.+++-+..+.-.++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 345555666666666666555544 2233455555666666666666665555543333211 222234455556665
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~ 251 (577)
+++.+-++++. .|+..-.....+-+...|.++.|.-+|..+..-. -|..++.
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~a---------------------kLAstLV 181 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG---------------------RLASTLV 181 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCT---------------------TTSSSSS
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHH---------------------HHHHHHH
Confidence 55544333321 2333333444555555555555555555544311 1222233
Q ss_pred hcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 037414 252 KCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSS 331 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 331 (577)
+.|++..|.+.-++ ..++.||-.+-.+|...+.+.-|.-.--.++- .||. ...++..|...|.+++-+.+++.
T Consensus 182 ~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 182 HLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp SCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHH
Confidence 33443333222111 14667888888888888887766554444432 2221 22356667778888887777776
Q ss_pred hhHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhC----CCC------CCHhHHHHHHHHHHhcCCHHHHH
Q 037414 332 MWDDFAVR-PDVKHYTCMVDLLGRAGRLDEALKLIESM----SVE------KDEGLWGALLGACRIHKNVDLAE 394 (577)
Q Consensus 332 m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~------p~~~~~~~ll~~~~~~g~~~~a~ 394 (577)
-+ |+. .....++-|.-.|++- ++++..+-++.. .+. -....|.-++-.|....+++.|.
T Consensus 255 gl---glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 255 AL---GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HT---TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred Hh---CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 64 332 3466677777777664 344444444332 211 13346777777777777776554
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.56 E-value=2.7 Score=33.50 Aligned_cols=87 Identities=13% Similarity=0.081 Sum_probs=51.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhhHhcCCCC--CHHHHHHHHHHHHHcCCH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEE---GLRLFSSMWDDFAVRP--DVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~ 358 (577)
......+.+-|.+....|. |+..+-..+..++.++..... ++.+++.+.+. + .| .....-.|.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344555566665555443 555555556667777665544 77777777643 1 13 223333455567788888
Q ss_pred HHHHHHHHhC-CCCCC
Q 037414 359 DEALKLIESM-SVEKD 373 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p~ 373 (577)
++|.+.++.+ .++|+
T Consensus 91 ~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888877776 44553
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.94 E-value=21 Score=37.31 Aligned_cols=323 Identities=8% Similarity=-0.048 Sum_probs=172.6
Q ss_pred hccCCCCCCCCCcccCccCCCCCCCCCCCChhhHHHHHHhccChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCh
Q 037414 30 LEPHGHEQNPMNPRVPMQMGPDCQFTRSVDPKFFISSLLSCRNIFQIRQVHAQIVAGG-TLTNLIVANKLLYIYALHKAL 108 (577)
Q Consensus 30 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~p~~~~~~~ll~a~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~ 108 (577)
..+.|++..+.++...+... .. .+...|..+....... ...++-..+.+.. .+.....-+.-+..+++.+++
T Consensus 16 a~~~~~~~~~~~l~~~l~~~-----pL-~~yl~y~~l~~~l~~~-~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY-----PL-YPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS-----TT-HHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHhhcCC-----Cc-HHHHHHHHHHhCcccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 34456666666665555322 12 2334566666554431 1125555555542 233334445567777788888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 037414 109 TDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSG 188 (577)
Q Consensus 109 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 188 (577)
.....++.. +..+...--....+....|+..+|....+.+-..|- ........++..+.+.|.+.
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt------------- 153 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD------------- 153 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC-------------
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC-------------
Confidence 888886665 322444344455667777887777776666655542 23334445555444333332
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 189 LDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
+..++. -+......|+...|..+...+... .......++..+.+-..+. ...... .
T Consensus 154 ---~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~----------------~~~~a~~~~al~~~p~~~~---~~~~~~-~ 209 (618)
T 1qsa_A 154 ---PLAYLE-RIRLAMKAGNTGLVTVLAGQMPAD----------------YQTIASAIISLANNPNTVL---TFARTT-G 209 (618)
T ss_dssp ---HHHHHH-HHHHHHHTTCHHHHHHHHHTCCGG----------------GHHHHHHHHHHHHCGGGHH---HHHHHS-C
T ss_pred ---HHHHHH-HHHHHHHCCCHHHHHHHHHhCCHH----------------HHHHHHHHHHHHhChHhHH---HHHhcc-C
Confidence 112222 234555677888888887766321 1123344454444433332 222222 2
Q ss_pred CChhh---HHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCH
Q 037414 269 KNVIS---WSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI--TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDV 342 (577)
Q Consensus 269 ~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 342 (577)
++... +...+.-+.+ .+.+.|..+|......+ ..+... ....+.......+...++...+...... .++.
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCCh
Confidence 22221 1122333333 37899999998886543 322222 2222333344445344555566655322 2343
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHhH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037414 343 KHYTCMVDLLGRAGRLDEALKLIESMSVEK-DEGL-WGALLGACRIHKNVDLAEMAAKSLLE 402 (577)
Q Consensus 343 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~ 402 (577)
....-.+....+.|+++.|.+.|+.|+..+ +..- .-=+..+....|+.++|..+++.+.+
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444455557899999999999996433 2121 12234466788999999999999875
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.85 E-value=1.1 Score=36.73 Aligned_cols=51 Identities=8% Similarity=-0.057 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 388 KNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 388 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
+|.++|.++|+.+++....-+..|...+.--.++|+...|.+++..-...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 566667777776666533334455555555566777777777776665543
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.67 E-value=4 Score=43.60 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 382 GACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 382 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
.-|...|+++.|+.+.+++...-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 336778999999999999999999999999999999999999999999999885
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.59 E-value=2.5 Score=34.77 Aligned_cols=59 Identities=12% Similarity=-0.025 Sum_probs=43.7
Q ss_pred cCCHHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHH
Q 037414 355 AGRLDEALKLIESM-SV-EKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVL 413 (577)
Q Consensus 355 ~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 413 (577)
.++.++|.++|+.+ .+ +.=...|-....--.++|+...|.+++.+.+.+.|.+......
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 36777788877776 11 1126678777777889999999999999999999886554433
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.63 E-value=15 Score=36.71 Aligned_cols=181 Identities=9% Similarity=0.148 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHHcCChHHHHHHHHHhhhC-CCCCCHHHHHHHHHHH----hcc
Q 037414 254 GSIDSAREIFDRMRQ-----KN----VISWSAMIAAYGYHGQGKKALDLFPMMLSS-RVLPNRITFVSLLYAC----SHT 319 (577)
Q Consensus 254 g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~----~~~ 319 (577)
|++++|.+.+-.+.+ .| ......++..|...|+++...+.+.-+... |..+...+ .++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 678888877755542 22 344677889999999999998877766543 44443332 333322 222
Q ss_pred CCHH--HHHHHHHHhhH--hcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhCC-----CCCC---HhHHHHHHHHH
Q 037414 320 GLVE--EGLRLFSSMWD--DFAVRP---DVKHYTCMVDLLGRAGRLDEALKLIESMS-----VEKD---EGLWGALLGAC 384 (577)
Q Consensus 320 g~~~--~a~~~~~~m~~--~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~---~~~~~~ll~~~ 384 (577)
...+ .-..+.+.... ...+-. .......|.+.|...|++.+|.+++..+. ..+. ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3222 22222222210 101111 12344678889999999999999999872 1111 23666777889
Q ss_pred HhcCCHHHHHHHHHHHHhc---CCCCc----hhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 385 RIHKNVDLAEMAAKSLLER---QPQNP----GHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 385 ~~~g~~~~a~~~~~~~~~~---~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
...+|+..|..+.+++... .++++ ..|...+..+...++|.+|.+.|.+.-+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999987532 23332 4677888889999999999988877754
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.10 E-value=4.9 Score=42.91 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCC-hHHHHHHHhcCCCCCcc--h--HHHHHHHHHhCC-ChhHHHHHHHHHHHC------CCCCCcc--
Q 037414 94 VANKLLYIYALHKA-LTDAHALFNGMKERDSV--S--WSVMVGGFSKVA-DFINCFETFREFIRC------GMQLDSY-- 159 (577)
Q Consensus 94 ~~~~li~~~~~~g~-~~~A~~~f~~m~~~~~~--~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~-- 159 (577)
....|+..+.-.|+ .+.|..+|+++...++. . ...+|..+.+.+ +--+|++++.+..+. ...+...
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 57899999988654432 1 223333333333 233566665555421 1222211
Q ss_pred ---------hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 037414 160 ---------TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMP 220 (577)
Q Consensus 160 ---------t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 220 (577)
....-...|...|+++.|..+-++.+... |.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222344677899999999999998874 6678999999999999999999999999997
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.03 E-value=1.9 Score=42.36 Aligned_cols=68 Identities=13% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh-----CCCccCCc
Q 037414 377 WGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR-----RRLKKIPG 444 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 444 (577)
...++..+...|+.+++...++.+...+|-+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445666777889999999999999889998888999999999999999999988887654 37766553
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.69 E-value=2.3 Score=39.39 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=67.0
Q ss_pred hHHHHHHHhcCCC--C---CcchHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCC--CcchHHHHHHHHhcC-CCh
Q 037414 108 LTDAHALFNGMKE--R---DSVSWSVMVGGFSKV-----ADFINCFETFREFIRCGMQL--DSYTLPFVIRACRDR-KDI 174 (577)
Q Consensus 108 ~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~-~~~ 174 (577)
...|...+++..+ | +-..|..|...|.+. |+.++|.+.|++.++. .| +..++......++.. ++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCH
Confidence 3456666666544 3 244788999999984 9999999999999984 55 366777777777774 999
Q ss_pred HHHHHHHHHHHHcCCC--CcHHHHHHH
Q 037414 175 VMGRLIHDIVLKSGLD--IDQFVCAAL 199 (577)
Q Consensus 175 ~~a~~~~~~~~~~g~~--~~~~~~~~l 199 (577)
+++.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987655 665555544
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.62 E-value=4.3 Score=30.66 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 368 MSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 368 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 356789999999999999999999999999988776544445565554
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.55 E-value=8.2 Score=28.96 Aligned_cols=60 Identities=17% Similarity=0.087 Sum_probs=36.8
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFV 310 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 310 (577)
..+.+.|++++|..+.+.+.-||...|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34556677777777777776777777766544 34566666666666666654 44444443
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.36 E-value=8.8 Score=28.84 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHH
Q 037414 248 DMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITF 309 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 309 (577)
..+.+.|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566777777777777666777777665443 4566666666666666554 3444444
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.85 E-value=25 Score=34.95 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC----C-C----hhhHHHHHHHHHHcCChHHHHHHHHHhhh----CCCCCCH-
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ----K-N----VISWSAMIAAYGYHGQGKKALDLFPMMLS----SRVLPNR- 306 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~- 306 (577)
.+...|...|...|++.+|..++.++.. . + +..|..-+..|...+++.+|..++++... ....|+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 3446788889999999999999888752 1 1 23566677888888999998888887642 2222322
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHhhHhc
Q 037414 307 -ITFVSLLYACSHTGLVEEGLRLFSSMWDDF 336 (577)
Q Consensus 307 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 336 (577)
..+...+..+...+++.+|.+.|.++.+.+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 234555666677788888887777775543
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.73 E-value=6.9 Score=31.32 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCC-CchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 390 VDLAEMAAKSLLERQPQ-NPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 390 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
..+++.+++.+.+.+|. .......|+-++.+.|++++|.+..+.+.+
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34566666666666653 234555666677777777777777666653
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.08 E-value=5.4 Score=30.10 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+.+..+.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4557777788888888999999999999999999999999999998865533 34556777664
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.90 E-value=28 Score=39.51 Aligned_cols=153 Identities=10% Similarity=-0.029 Sum_probs=84.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---------ChhHHHHHHhcC
Q 037414 164 VIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTR---------DLVTWTVMIGAN 234 (577)
Q Consensus 164 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~i~~~ 234 (577)
++..+...+..+.+..+... .+.+....-.+..+|..+|++++|...|.+.... ....+..+....
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 33444444555544443322 2345555556778899999999999999886421 111222222111
Q ss_pred C-CCcchhhHHHHHHHHHhcCCHHHHHHHHHhcc----CCCh----hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 235 K-FLLDVILGTAVIDMYAKCGSIDSAREIFDRMR----QKNV----ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 235 g-~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
. ...-..-|.-++..+-+.|.++.+.++-.... ..+. ..|..+..++...|++++|...+-.+.....+
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r-- 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK-- 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence 1 11112345666777777777776665544322 1111 24777777788888888887777766554332
Q ss_pred HHHHHHHHHHHhccCCHH
Q 037414 306 RITFVSLLYACSHTGLVE 323 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~ 323 (577)
...+..|+..++..|.++
T Consensus 971 ~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhCCChh
Confidence 334555555555555443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.84 E-value=4.7 Score=33.70 Aligned_cols=111 Identities=8% Similarity=0.059 Sum_probs=60.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc-----CCCh-------hhHHHHHHHHHHcCChHHHHHHHHHhhhCC-CCCCHH-HHHH
Q 037414 246 VIDMYAKCGSIDSAREIFDRMR-----QKNV-------ISWSAMIAAYGYHGQGKKALDLFPMMLSSR-VLPNRI-TFVS 311 (577)
Q Consensus 246 Li~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~ 311 (577)
=+..+...|.++.|+-+.+.+. ++++ .++..+.+++...|++..|...|++.+... .-+... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4666777888888877776653 1332 144556677777888888888887764321 111111 1111
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSV 370 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 370 (577)
+- ...... ......++.+.---+...|.+.|++++|+.+++.++.
T Consensus 106 ~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 000000 0012233445545566778888888888888888853
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.80 E-value=37 Score=33.06 Aligned_cols=162 Identities=14% Similarity=0.059 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhccC--------CChhhHHHHHHHHHHcC-ChHHHHHHHHHhhhCCCCCCHHHH--
Q 037414 241 ILGTAVIDMYAKCGSIDSAREIFDRMRQ--------KNVISWSAMIAAYGYHG-QGKKALDLFPMMLSSRVLPNRITF-- 309 (577)
Q Consensus 241 ~~~~~Li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~-- 309 (577)
.....|...|.+.|+.++..+++..... +..-.-..+|..+.... ..+.-.++..+..+.. .-+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3456789999999999999999988764 23334667777776643 3334444444443210 0011223
Q ss_pred ----HHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHhH
Q 037414 310 ----VSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAGRLDEALKLIESM-----SVEKDEGL 376 (577)
Q Consensus 310 ----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~ 376 (577)
..+...|...|++.+|.+++..+.+...-..+ .++|..-+.+|...+++.++...+.+. .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25778889999999999999888765332122 456777788899999999998888765 22234332
Q ss_pred HHHH--HH--HHH-hcCCHHHHHHHHHHHHhc
Q 037414 377 WGAL--LG--ACR-IHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 377 ~~~l--l~--~~~-~~g~~~~a~~~~~~~~~~ 403 (577)
-..+ .. .+. ..+++..|...|-+..+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 2221 12 245 689999998888777643
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.23 E-value=56 Score=35.77 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=9.5
Q ss_pred HHHHcCChHHHHHHHHHhhh
Q 037414 280 AYGYHGQGKKALDLFPMMLS 299 (577)
Q Consensus 280 ~~~~~g~~~~A~~l~~~m~~ 299 (577)
+|+..|+.....+++..+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34445554444445555543
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.67 E-value=42 Score=36.71 Aligned_cols=152 Identities=16% Similarity=0.016 Sum_probs=85.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHhcc
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQ--K-NVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRIT--FVSLLYACSHT 319 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~ 319 (577)
+|...|.-.|+-+....++..+.+ . ++.-..++.-++...|+.+.+..+.+.+... ..|.... ..++..+|+..
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred HHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 455556677887777777766543 1 2223334445566789999999998888764 2222221 12345578889
Q ss_pred CCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHhCC--CCCCHhHHHHHHHHHHhcCCH-HHHH
Q 037414 320 GLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLL--GRAGRLDEALKLIESMS--VEKDEGLWGALLGACRIHKNV-DLAE 394 (577)
Q Consensus 320 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~-~~a~ 394 (577)
|+.....+++..+.++ ++..+-...+-++ .-.|+.+.+.++++.+. ..|....-..+.-+....|+. ..+.
T Consensus 574 Gn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp CCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 9988888899888653 2333333334434 34677666777776552 223333222233333333332 4555
Q ss_pred HHHHHHH
Q 037414 395 MAAKSLL 401 (577)
Q Consensus 395 ~~~~~~~ 401 (577)
..+..+.
T Consensus 650 d~L~~L~ 656 (963)
T 4ady_A 650 DVLDPLT 656 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5666554
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.57 E-value=17 Score=30.31 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=57.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcC-CCCc-------HHHHHHHHHHHHhCCCHHHHHHHHhhCC------CCChh
Q 037414 160 TLPFVIRACRDRKDIVMGRLIHDIVLKSG-LDID-------QFVCAALVDMYAKCKVIDDARQLFDQMP------TRDLV 225 (577)
Q Consensus 160 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~ 225 (577)
++..-++.+...+.++.|+-+.+.++... ..++ ..++..+.+++...|++..|...|++.. .+...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444455555666666665555443321 1122 1244555666677777777766666531 11110
Q ss_pred HHHHH-Hhc-----CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 037414 226 TWTVM-IGA-----NKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ 268 (577)
Q Consensus 226 ~~~~~-i~~-----~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~ 268 (577)
+.+++ +.. .....+..+---+..+|.+.|+.++|..+++.++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 00000 000 11233556666788899999999999999998864
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.26 E-value=22 Score=40.36 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC---C-C----------------------hhhHHHHHHHHHHcCChHHHHHHHHHh
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQ---K-N----------------------VISWSAMIAAYGYHGQGKKALDLFPMM 297 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~---~-~----------------------~~~~~~li~~~~~~g~~~~A~~l~~~m 297 (577)
-.+..+|..+|++++|...|++... . + ..-|.-++..|-+.|.++.++++-+..
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456777788888888888876532 0 0 011444555666666666666655544
Q ss_pred hhCCCCCCH--H--HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCH
Q 037414 298 LSSRVLPNR--I--TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRL 358 (577)
Q Consensus 298 ~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 358 (577)
.+...+-+. . .|..+..++...|++++|...+-.+.. ..--......||..++..|+.
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---~~~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---TPLKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---SSSCHHHHHHHHHHHHHHCCH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHhCCCh
Confidence 432111111 1 345566666666666666666655521 112234444555545544443
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.89 E-value=11 Score=36.79 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=23.2
Q ss_pred HHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 037414 313 LYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIE 366 (577)
Q Consensus 313 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 366 (577)
+.++...|+.+++...+..+... -+-+...|..+|.+|.+.|+..+|.+.|+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~ 229 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYR 229 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444555544444444322 11233344455555555555555544443
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.59 E-value=20 Score=28.74 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=39.8
Q ss_pred hCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 367 SMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 367 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.++
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3467899999999999999999999999999999876544455666554
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.33 E-value=13 Score=29.83 Aligned_cols=63 Identities=13% Similarity=0.239 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHH
Q 037414 286 QGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVD 350 (577)
Q Consensus 286 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 350 (577)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|..+|+-+..+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34467777788888889999999999999999999999999999998655 3444666777764
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.69 E-value=55 Score=30.93 Aligned_cols=82 Identities=11% Similarity=0.005 Sum_probs=50.5
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 037414 238 LDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACS 317 (577)
Q Consensus 238 ~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 317 (577)
-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+...+... .+|...-.+++. |.
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL 198 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YL 198 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HH
Confidence 467788889999999999999998884322223356655554444433321 222233333443 44
Q ss_pred ccCCHHHHHHHHHHhhH
Q 037414 318 HTGLVEEGLRLFSSMWD 334 (577)
Q Consensus 318 ~~g~~~~a~~~~~~m~~ 334 (577)
..+++..|..+++...+
T Consensus 199 ~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 199 LVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 56788888887766654
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.73 E-value=33 Score=27.40 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 379 ALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 379 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
-|.-|+.+.|+++.|.+..+.+++.+|.+.
T Consensus 83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344445555555555555555555555553
No 261
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=71.06 E-value=1.1e+02 Score=32.17 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=47.9
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHh--HHHHHHHHHHhcC---------------C-HHHHHHHHHHHHh-------cCC
Q 037414 351 LLGRAGRLDEALKLIESMSVEKDEG--LWGALLGACRIHK---------------N-VDLAEMAAKSLLE-------RQP 405 (577)
Q Consensus 351 ~~~~~g~~~~A~~~~~~m~~~p~~~--~~~~ll~~~~~~g---------------~-~~~a~~~~~~~~~-------~~p 405 (577)
-+...|++++|..+|.-.+ +.|.+ ..+.+++-....- + ...|.++.+.... ..+
T Consensus 452 ~ae~~G~~~dAi~LY~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE-EYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 4567899999999998886 33332 5555554433211 1 2334443333211 112
Q ss_pred CCchhHHHHHHH-----HhccCChhHHHHHHHHH
Q 037414 406 QNPGHYVLLSNV-----YANAGRWQDVAKIRDLM 434 (577)
Q Consensus 406 ~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m 434 (577)
.+..++..|... +...|+|++|.+.++++
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 233455555544 37899999999888765
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.56 E-value=51 Score=28.29 Aligned_cols=17 Identities=18% Similarity=-0.095 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHhccCC
Q 037414 305 NRITFVSLLYACSHTGL 321 (577)
Q Consensus 305 ~~~t~~~ll~a~~~~g~ 321 (577)
|...-...+.++.+.+.
T Consensus 156 ~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 156 DGWVRQSAADALGEIGG 172 (211)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33333334444444443
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.73 E-value=48 Score=30.18 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=26.6
Q ss_pred HHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 037414 281 YGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMW 333 (577)
Q Consensus 281 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 333 (577)
..+.|..++|++....-++.. +-|...-..++.-+|-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555555555555442 3344444445555555566666655555543
No 264
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.97 E-value=38 Score=25.45 Aligned_cols=79 Identities=11% Similarity=0.028 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~ 251 (577)
...++|..|-+.+...+- ...+--+-+..+...|++++|..+.+.+.-||.++|-++ +-.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL------------------ce~ 79 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFAL------------------CEW 79 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHH------------------HHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH------------------HHH
Confidence 456778888877777653 444444555677889999999999999888877776544 345
Q ss_pred hcCCHHHHHHHHHhccCCC
Q 037414 252 KCGSIDSAREIFDRMRQKN 270 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~~ 270 (577)
+.|..+++...+.++...+
T Consensus 80 rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 80 HLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HTTCHHHHHHHHHHHHTCS
T ss_pred hcccHHHHHHHHHHHHhCC
Confidence 7888888888776665433
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=66.88 E-value=12 Score=34.06 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=45.8
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 350 DLLGRAGRLDEALKLIESM-SVEK-DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..+.+.|++++|++....- ...| |...-..|+..++..|+++.|..-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3466788999988776554 4455 666777788889999999999999999999988754
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=66.26 E-value=40 Score=25.39 Aligned_cols=79 Identities=13% Similarity=0.088 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHH
Q 037414 172 KDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYA 251 (577)
Q Consensus 172 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~ 251 (577)
...++|..|-+.+...+- ...+--+-+..+...|++++|..+.+.+.-||.++|-++ +-.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL------------------ce~ 80 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLAL------------------CEY 80 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHH------------------HHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHH------------------HHH
Confidence 456778888887777653 444444555677889999999999999888877776544 345
Q ss_pred hcCCHHHHHHHHHhccCCC
Q 037414 252 KCGSIDSAREIFDRMRQKN 270 (577)
Q Consensus 252 ~~g~~~~A~~~~~~~~~~~ 270 (577)
+.|..+++...+.++...+
T Consensus 81 rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 81 RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHTCHHHHHHHHHHHTTCC
T ss_pred hcccHHHHHHHHHHHHhCC
Confidence 7888888888876665543
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.45 E-value=34 Score=32.71 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCCCHH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQKN---VISWSAMIAAYGYHGQ--GKKALDLFPMMLSSRVLPNRI 307 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 307 (577)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4677788888888888888888887653 2233444444444332 345667777777666554433
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.08 E-value=91 Score=29.13 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHH----HH
Q 037414 73 IFQIRQVHAQIVAGGT-LTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFET----FR 147 (577)
Q Consensus 73 ~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~ 147 (577)
++...+-++.-++.|- ---...|-++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 4444444444555552 12345778888889999999999988643 23356667777666554 44
Q ss_pred HHHHCCCCCCcchHHHHHHHHhcCCChH-HHHHHHHHHH----HcCC--CCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 148 EFIRCGMQLDSYTLPFVIRACRDRKDIV-MGRLIHDIVL----KSGL--DIDQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 148 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
-..+.+++++......++..+.....-+ .=.++.+.++ +.|- .-|+.....+...|.+.|++.+|+..|-
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4555678888877777777665432111 1123333333 3321 2356677777777888888888877664
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.06 E-value=57 Score=26.42 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHcCCHH---HHHHHHHhC-CCCC-C-HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 037414 340 PDVKHYTCMVDLLGRAGRLD---EALKLIESM-SVEK-D-EGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPG 409 (577)
Q Consensus 340 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 409 (577)
|+..+---+.-++.+..+.+ ++..+++.+ ...| + ....--|.-++.+.|++++|.+..+.+++.+|.+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 44444444444455544432 344444444 1123 1 223444566788999999999999999999999864
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.37 E-value=66 Score=27.75 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=67.3
Q ss_pred HHHHHHhC-CCCCCHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHhccCChhHHHHHHHHH
Q 037414 361 ALKLIESM-SVEKDEG---LWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDLM 434 (577)
Q Consensus 361 A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 434 (577)
+.+.|... ..+.|.. .|-..+..| ..++...+..+|..|...+ ...+..|...+..+...|++++|.++++.=
T Consensus 63 c~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 63 CLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444443 2334554 444444433 2455778999999997765 566778999999999999999999999877
Q ss_pred hhCCCccCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHCCc
Q 037414 435 TRRRLKKIPGWTWIEVENKIHQFSVGDSTHPQSEEIYRMLVTLSEKLELAGY 486 (577)
Q Consensus 435 ~~~g~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 486 (577)
.+++-.| .+.+.........+|.+.++
T Consensus 142 I~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 142 AENNCRP-------------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCC
Confidence 6665432 23444555577778888777
No 271
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.28 E-value=89 Score=29.21 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHhCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 365 IESMSVEKDEG--LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 365 ~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...+++|... +...-++.+.+.+++..|..+.+++++++|+.. ..++|.+++..-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 33446666433 777788889999999999999999999998632 3456777777766544
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=62.25 E-value=1.5e+02 Score=30.75 Aligned_cols=111 Identities=12% Similarity=-0.006 Sum_probs=64.1
Q ss_pred CHHHHHHHHHhccC---CChh----hHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 037414 255 SIDSAREIFDRMRQ---KNVI----SWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSHTGLVEEGLR 327 (577)
Q Consensus 255 ~~~~A~~~~~~~~~---~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 327 (577)
+.+.|...|....+ .+.. .+..+...+...+...++...+....... ++.....-.+....+.|+++.+..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 77888888877642 1222 22233333344453556666666655432 333333333343446688888888
Q ss_pred HHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Q 037414 328 LFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS 369 (577)
Q Consensus 328 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 369 (577)
.|..|... ......-.--+..++...|+.++|..+|+.+.
T Consensus 307 ~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 307 WLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888432 11123333344556777888888988888884
No 273
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=60.19 E-value=1.7e+02 Score=30.63 Aligned_cols=80 Identities=11% Similarity=0.015 Sum_probs=39.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---C
Q 037414 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDMYAK---C 206 (577)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~ 206 (577)
...+.-.|+++.|++.+-.. ...|.+.+...+.-+.-.+- ...++.. +.+ .| ..-+..||..|.+ .
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHhhc
Confidence 34455578888888876543 23355555555554433221 1111111 001 11 2225677777765 4
Q ss_pred CCHHHHHHHHhhCC
Q 037414 207 KVIDDARQLFDQMP 220 (577)
Q Consensus 207 g~~~~A~~~~~~m~ 220 (577)
.++.+|.+.|--+.
T Consensus 370 td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 370 SDPRVAVEYLVLIT 383 (661)
T ss_dssp TCHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHh
Confidence 78888888776663
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.07 E-value=25 Score=34.84 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-----CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037414 346 TCMVDLLGRAGRLDEALKLIESM-----SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLL 401 (577)
Q Consensus 346 ~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 401 (577)
..+.+.|.+.|++++|.+.+.++ +..--...+-..++.+...+|+..+....+++.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444455555555555555444 111112244444555555555555555555543
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.78 E-value=50 Score=29.64 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=13.3
Q ss_pred HHHHHHHcCCChHHHHHHHhcCC
Q 037414 97 KLLYIYALHKALTDAHALFNGMK 119 (577)
Q Consensus 97 ~li~~~~~~g~~~~A~~~f~~m~ 119 (577)
+.+...++.|+++....+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC
Confidence 44455556666666666665543
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=57.67 E-value=1e+02 Score=27.40 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=27.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcc-C---CChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCC
Q 037414 247 IDMYAKCGSIDSAREIFDRMR-Q---KNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 305 (577)
+...+..|+.+-...+++... . .|...++.+..+ +..|+.....++++.+.+.|..++
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 344455677777766666522 1 222223333222 334444444455555555555443
No 277
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.29 E-value=1.4e+02 Score=28.87 Aligned_cols=215 Identities=14% Similarity=0.074 Sum_probs=122.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC----CChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccC----
Q 037414 197 AALVDMYAKCKVIDDARQLFDQMPT----RDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQ---- 268 (577)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~---- 268 (577)
.-|+..|...|++.+|.+++.++.+ .|.-+ .-..++-.-+.+|...|++.++...+.....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~-----------~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKN-----------LLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch-----------hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 4678899999999999888776643 12111 1245677778899999999999988876642
Q ss_pred --CChhhHHH----HHHHHH-HcCChHHHHHHHHHhhh----CCCCC---CHHHHHHHHHHHhccCCHHHHHHHH-HHhh
Q 037414 269 --KNVISWSA----MIAAYG-YHGQGKKALDLFPMMLS----SRVLP---NRITFVSLLYACSHTGLVEEGLRLF-SSMW 333 (577)
Q Consensus 269 --~~~~~~~~----li~~~~-~~g~~~~A~~l~~~m~~----~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~-~~m~ 333 (577)
+++..-.. -.-.+. ..+++.+|...|-+..+ .| .| +...|. ++.+.......+- ..++ ....
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYl-vL~aLl~~~r~el-~~~l~~~~~ 248 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYM-LLCKIMLGQSDDV-NQLVSGKLA 248 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHH-HHHHHHTTCGGGH-HHHHHSHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHH-HHHHHHcCCHHHH-HHHhccccc
Confidence 22222111 123345 68899999988877642 12 12 122343 3333333332221 1222 1211
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCC--CCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 037414 334 DDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMS--VEKDEGLW---GALLGACRIHKNVDLAEMAAKSLLERQPQNP 408 (577)
Q Consensus 334 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 408 (577)
..+ ..|....+..++.+| +.+++.+..++++... +..|.... ..+..... ...+.++ ..|-..
T Consensus 249 ~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir--------~~~L~~i--~~pYsr 316 (394)
T 3txn_A 249 ITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML--------EQNLCRI--IEPYSR 316 (394)
T ss_dssp HTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH--------HHHHHHH--HTTCSE
T ss_pred ccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--------HHHHHHH--hHhhce
Confidence 222 346666677777766 4678888888887762 34455421 11111100 1111111 235555
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 409 GHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
.....+...+.- ..++++..+.+|...|.
T Consensus 317 Isl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 317 VQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp EEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred eeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 667777776654 67899999999998774
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.72 E-value=1.4e+02 Score=27.89 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHH----HHHhhhCCCCCCHHHHHHHHHHHhccC
Q 037414 245 AVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDL----FPMMLSSRVLPNRITFVSLLYACSHTG 320 (577)
Q Consensus 245 ~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~g 320 (577)
++..=|.+.+++++|.+++..- ...+.++|+...|.++ .+-..+.++++|......++..+..-.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 4566688888888888875542 3345667776666554 444555688888887777777665432
Q ss_pred CHH-HHHHHHHHhhH---hcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhc---CCHH
Q 037414 321 LVE-EGLRLFSSMWD---DFAV--RPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIH---KNVD 391 (577)
Q Consensus 321 ~~~-~a~~~~~~m~~---~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g~~~ 391 (577)
.-+ .=.++.+.+++ +.|- .-+......+...|.+.|++.+|+.-|- .+..-|...+..++.-+... |...
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 111 11222222221 1122 2356777888888999999999988776 33111345565555544443 4433
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhh
Q 037414 392 LAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 392 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 436 (577)
++-.+. .-.+--|...|+...|..+++...+
T Consensus 186 e~dlf~--------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 186 TVAEFF--------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH--------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred hHHHHH--------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332211 2223346677899999999887654
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.18 E-value=53 Score=30.00 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=10.7
Q ss_pred HHHHHcCCChHHHHHHHhc
Q 037414 99 LYIYALHKALTDAHALFNG 117 (577)
Q Consensus 99 i~~~~~~g~~~~A~~~f~~ 117 (577)
+...+..|+.+-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344456666666666654
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.97 E-value=33 Score=33.93 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC------CChhhHHHHHHHHHHcCChHHHHHHHHHhhh---CCCCCCHHHHH--
Q 037414 242 LGTAVIDMYAKCGSIDSAREIFDRMRQ------KNVISWSAMIAAYGYHGQGKKALDLFPMMLS---SRVLPNRITFV-- 310 (577)
Q Consensus 242 ~~~~Li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~-- 310 (577)
+...+.+.|.++|+++.|.+.|.++.+ .-+..+-..|..+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445688999999999999999998864 1234577788888889999999988888653 33334332111
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhHhcC
Q 037414 311 SLLYACSHTGLVEEGLRLFSSMWDDFA 337 (577)
Q Consensus 311 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 337 (577)
.-...+...+++..|.+.|-+....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 112234567888888888877766543
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.83 E-value=1.3e+02 Score=30.27 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh-hhHHH-------HHHHHHHcCChHHHHHHHHHhhhC
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV-ISWSA-------MIAAYGYHGQGKKALDLFPMMLSS 300 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~-------li~~~~~~g~~~~A~~l~~~m~~~ 300 (577)
-..++|.|+..|...+.++.|..+..+..-|.. .+-+- +...+.-.+++.+|.+.|......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788999999999999999999998875532 22222 344566688999999998887764
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.09 E-value=1.2e+02 Score=25.65 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 037414 91 NLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVAD 138 (577)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 138 (577)
|..+-...+..+.+.+..+....+.+.+..++...-...+.++.+.+.
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333333334443433333333333334444333334444444443
No 283
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.40 E-value=1.2e+02 Score=24.89 Aligned_cols=79 Identities=9% Similarity=0.049 Sum_probs=49.4
Q ss_pred HHHHHHHHhC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchhHHHHHHHHhccCChhHHHHHHHHHh
Q 037414 359 DEALKLIESM-SVEKDEGLWGALLGACRIHKNVDLAEMAAKSLLERQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDLMT 435 (577)
Q Consensus 359 ~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 435 (577)
+.+.+.|... ..+.|..-...-+...... +.+..+|..|...+ ...+..|...+..+...|++++|.++++.=.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345555444 2334554333222222222 23778888887654 5566788888999999999999999997766
Q ss_pred hCCCc
Q 037414 436 RRRLK 440 (577)
Q Consensus 436 ~~g~~ 440 (577)
+++-.
T Consensus 129 ~~~A~ 133 (152)
T 4a1g_A 129 QNQAE 133 (152)
T ss_dssp HTTCB
T ss_pred HcCCc
Confidence 65543
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.55 E-value=42 Score=26.65 Aligned_cols=61 Identities=11% Similarity=0.243 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCC
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVAD--FINCFETFREFIRCGMQ 155 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 155 (577)
.+.++.-|...|+.++|.+.++++..| ..+...++..++-+.+. .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 466788888889999999999998765 22344455555555432 35677788888776644
No 285
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=43.32 E-value=44 Score=31.20 Aligned_cols=63 Identities=19% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCCC
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNV---ISWSAMIAAYGYHGQ--GKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 305 (577)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+...+++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 35677778888888888888888876521 223334444443322 3445666777666554433
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.29 E-value=1.5e+02 Score=24.63 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcC--CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCc
Q 037414 393 AEMAAKSLLERQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLK 440 (577)
Q Consensus 393 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 440 (577)
...+|..|...+ ...+..|...+..+...|++.+|.+++..=++++-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 667788887654 556778888999999999999999999877766643
No 287
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=41.84 E-value=7.8 Score=23.32 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=12.9
Q ss_pred cCCccccc-ccccccCCCC
Q 037414 559 DANRFHHF-EGGACSCRDY 576 (577)
Q Consensus 559 ~~~~~h~~-~~g~~s~~~~ 576 (577)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 35555655 6899999976
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.63 E-value=95 Score=27.59 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=50.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC--CCCC----CcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 037414 129 MVGGFSKVADFINCFETFREFIRC--GMQL----DSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM 202 (577)
Q Consensus 129 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 202 (577)
-+..+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 356677778888888777766542 2222 1122233333332222233344444444 32 4456666777788
Q ss_pred HHhCCCHHHHHHHHhhC
Q 037414 203 YAKCKVIDDARQLFDQM 219 (577)
Q Consensus 203 ~~~~g~~~~A~~~~~~m 219 (577)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 99999999999998654
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.37 E-value=98 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCCCH
Q 037414 243 GTAVIDMYAKCGSIDSAREIFDRMRQKNV---ISWSAMIAAYGYHGQ--GKKALDLFPMMLSSRVLPNR 306 (577)
Q Consensus 243 ~~~Li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 306 (577)
.+.++.-|...|+.++|.+.++++..|.. +...++..++-+.++ .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 35678888889999999999999876522 233444445554432 35677777777776654433
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.76 E-value=2e+02 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=10.7
Q ss_pred HHHHhcCCHHHHHHHHHhc
Q 037414 248 DMYAKCGSIDSAREIFDRM 266 (577)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~~ 266 (577)
...+..|+.+-+..+++.-
T Consensus 151 ~~A~~~g~~~~v~~Ll~~g 169 (437)
T 1n11_A 151 HVAAKYGKVRVAELLLERD 169 (437)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHhCC
Confidence 3445566666666555543
No 291
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=38.95 E-value=1.8e+02 Score=24.63 Aligned_cols=153 Identities=15% Similarity=0.098 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 037414 239 DVILGTAVIDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRITFVSLLYACSH 318 (577)
Q Consensus 239 ~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 318 (577)
+..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+.++.. .+|...-...+.++.+
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 44444555666677776554555555556677666666677777777643 4444444443 3566666666777777
Q ss_pred cCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 037414 319 TGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 319 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
.+..+ +...+..+++ .++..+-...+.++++.|..+....+.+-+. .++..+-...+.++...++ ..+...+.
T Consensus 108 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-~~~~~~L~ 180 (211)
T 3ltm_A 108 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK-DEDGWVRQSAADALGEIGG-ERVRAAME 180 (211)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred hCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 76643 3334444432 3666676777777887776543333334333 5676666666777776665 34444444
Q ss_pred HHHh
Q 037414 399 SLLE 402 (577)
Q Consensus 399 ~~~~ 402 (577)
.+++
T Consensus 181 ~~l~ 184 (211)
T 3ltm_A 181 KLAE 184 (211)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 292
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.82 E-value=37 Score=27.88 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=42.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCC
Q 037414 94 VANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVAD--FINCFETFREFIRCGMQ 155 (577)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 155 (577)
..+.++.-|...|+.++|.+.++++..| ..+...++..++-+.++ .+.+..++..+...|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3567888888899999999999998765 23344555555555332 34567778788776543
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=38.55 E-value=1.2e+02 Score=29.46 Aligned_cols=284 Identities=11% Similarity=0.027 Sum_probs=134.2
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHcCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 037414 78 QVHAQIVAGGTLTNLIV--ANKLLYIYALHKALTDAHALFNGMKER---DSVSWSVMVGGFSKVADFINCFETFREFIRC 152 (577)
Q Consensus 78 ~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 152 (577)
++...+++.|..++... ..+.+...++.|+.+-+..+++.-... +...++. +...++.|+.+ +++.+.+.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~ 102 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP-LHCAARIGHTN----MVKLLLEN 102 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH-HHHHHHHTCHH----HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHH----HHHHHHhC
Confidence 35555666676554321 223445556778888888887754332 2222333 33445566653 44445555
Q ss_pred CCCCCcc---hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhHH
Q 037414 153 GMQLDSY---TLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQ--FVCAALVDMYAKCKVIDDARQLFDQMPTRDLVTW 227 (577)
Q Consensus 153 g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 227 (577)
|..|+.. ..+.+ ...+..|+.+.+..++ +.+..++. ......+...++.|+.+-+..+++.-...+..
T Consensus 103 ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-- 175 (437)
T 1n11_A 103 NANPNLATTAGHTPL-HIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-- 175 (437)
T ss_dssp TCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--
T ss_pred CCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--
Confidence 6555432 22233 3344556766555444 34432211 01112344556788888887777654332211
Q ss_pred HHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCC
Q 037414 228 TVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRMRQKNV---ISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLP 304 (577)
Q Consensus 228 ~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 304 (577)
+..- ...+...+..|+.+-...+++.-..++. ..++.+ ...+..|+.+-+..++ +.|..+
T Consensus 176 -----------~~~g-~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll----~~g~~~ 238 (437)
T 1n11_A 176 -----------GKNG-LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEVARSLL----QYGGSA 238 (437)
T ss_dssp -----------CSSC-CCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHHHHHHH----HTTCCT
T ss_pred -----------CCCC-CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHH----HcCCCC
Confidence 0000 1124455677888777777665443322 223333 3345567765444444 333332
Q ss_pred CH---HHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHhCCCCC---CHhH
Q 037414 305 NR---ITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVK--HYTCMVDLLGRAGRLDEALKLIESMSVEK---DEGL 376 (577)
Q Consensus 305 ~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~p---~~~~ 376 (577)
+. ...+.+ ...+..|..+-...+++. +..++.. .-.+.+...++.|+.+-+.-+++.- ..+ |...
T Consensus 239 ~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g 311 (437)
T 1n11_A 239 NAESVQGVTPL-HLAAQEGHAEMVALLLSK-----QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMG 311 (437)
T ss_dssp TCCCTTCCCHH-HHHHHTTCHHHHHHHHTT-----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSC
T ss_pred CCCCCCCCCHH-HHHHHCCCHHHHHHHHhc-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-ccCCCCCCCC
Confidence 21 111222 233455666555444432 3332211 0112233344677777666666543 121 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 037414 377 WGALLGACRIHKNVDLAEMAAK 398 (577)
Q Consensus 377 ~~~ll~~~~~~g~~~~a~~~~~ 398 (577)
++.| ......|+.+....+++
T Consensus 312 ~t~L-~~A~~~g~~~~v~~Ll~ 332 (437)
T 1n11_A 312 YTPL-HVASHYGNIKLVKFLLQ 332 (437)
T ss_dssp CCHH-HHHHHSSCSHHHHHHHH
T ss_pred CCHH-HHHHHcCcHHHHHHHHh
Confidence 2333 33455677765555544
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.12 E-value=4.7e+02 Score=28.72 Aligned_cols=86 Identities=7% Similarity=-0.139 Sum_probs=51.9
Q ss_pred HHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCC----------------
Q 037414 312 LLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLDEALKLIESM--SVEKD---------------- 373 (577)
Q Consensus 312 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 373 (577)
++..|...|..+-+.++.... +.+...--.+..+|...|++++|.+.|++. ++..+
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 566667777777665543322 223322234556788899999999999887 22111
Q ss_pred -------HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037414 374 -------EGLWGALLGACRIHKNVDLAEMAAKSLLER 403 (577)
Q Consensus 374 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 403 (577)
..-|..++..+.+++.++.+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 114455566666667777777666666653
No 295
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.74 E-value=1.9e+02 Score=24.71 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=30.2
Q ss_pred HHHHHHHHHhCCCCCCHh--HH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHH
Q 037414 358 LDEALKLIESMSVEKDEG--LW-----GALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLS 415 (577)
Q Consensus 358 ~~~A~~~~~~m~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 415 (577)
++.|+.+++.+.-.-|.. .- -..+..|.+.|.+++|.+++++.....+.+...-.-|.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~ 158 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLL 158 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 466777777774333311 11 12234577888888888888887766655444333333
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.84 E-value=59 Score=26.65 Aligned_cols=62 Identities=18% Similarity=0.301 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHhhhCCCCCC
Q 037414 244 TAVIDMYAKCGSIDSAREIFDRMRQKN---VISWSAMIAAYGYHGQ--GKKALDLFPMMLSSRVLPN 305 (577)
Q Consensus 244 ~~Li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 305 (577)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 345555666666666666666654432 1223333334433222 3345566666665554433
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.16 E-value=1.2e+02 Score=25.98 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=12.5
Q ss_pred HHHHHHcCCChHHHHHHHhcCC
Q 037414 98 LLYIYALHKALTDAHALFNGMK 119 (577)
Q Consensus 98 li~~~~~~g~~~~A~~~f~~m~ 119 (577)
.+...++.|+.+-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3444556666666666665543
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.87 E-value=2.1e+02 Score=25.29 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=40.8
Q ss_pred HHHHHHcCCHHHHHHHHHhC-----CCCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHh
Q 037414 349 VDLLGRAGRLDEALKLIESM-----SVEK----DEGLWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYA 419 (577)
Q Consensus 349 i~~~~~~g~~~~A~~~~~~m-----~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 419 (577)
++.+....++++|.+++++. +.++ +.......+..-.....-..+..+.+.+ .. ...+......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~-~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS-SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-cCCHHHHHHHHHHHH
Confidence 34455556666666555544 1111 1112222233323323333333444444 22 333445555666777
Q ss_pred ccCChhHHHHHHHHHhh
Q 037414 420 NAGRWQDVAKIRDLMTR 436 (577)
Q Consensus 420 ~~g~~~~A~~~~~~m~~ 436 (577)
+.|+-++|.++|-+.+.
T Consensus 103 rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHH
Confidence 77777777777765544
No 299
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.49 E-value=2.5e+02 Score=23.43 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=7.8
Q ss_pred CCChhhHHHHHHHHHHcCC
Q 037414 268 QKNVISWSAMIAAYGYHGQ 286 (577)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~ 286 (577)
.++...-...+.++.+.|+
T Consensus 87 d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 87 DEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 3443333344444444443
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.30 E-value=2.4e+02 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=13.9
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC
Q 037414 132 GFSKVADFINCFETFREFIRCGMQLD 157 (577)
Q Consensus 132 ~~~~~g~~~~A~~~~~~m~~~g~~p~ 157 (577)
..++.|+.+-+..+++.+.+.|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 44555666655555555555554443
No 301
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.51 E-value=58 Score=24.26 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHH
Q 037414 78 QVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCF 143 (577)
Q Consensus 78 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 143 (577)
.+++.+.+.|+- +..-...+-. .....+.+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 366777777743 2222222221 001247889999999999998899999999998777765553
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.30 E-value=5e+02 Score=28.52 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=32.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCC----HHHHHHHHHHHHHcC
Q 037414 308 TFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPD----VKHYTCMVDLLGRAG 356 (577)
Q Consensus 308 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g 356 (577)
-|..++..+.+.+.++.+.++-+..++... ..| ...|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~-~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKE-TDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-SCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCCccchHHHHHHHHHHHhhCC
Confidence 577888888888999888888877775322 112 245666666665544
No 303
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.11 E-value=1.6e+02 Score=21.39 Aligned_cols=63 Identities=13% Similarity=0.087 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 037414 76 IRQVHAQIVAGGTLTNLIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINC 142 (577)
Q Consensus 76 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 142 (577)
...+++.+.+.|+-. ..-+..+-. .....+.|.++++.++.+...+|..++.++.+.+...-|
T Consensus 24 v~~lld~L~~~~vlt-~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLT-ISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSC-HHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 456778888887543 333333222 357788999999999998889999999988887764443
No 304
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.07 E-value=1.2e+02 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCC-----CcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 037414 109 TDAHALFNGMKER-----DSVSWSVMVGGFSKVADFINCFETFREFIRCGMQLD 157 (577)
Q Consensus 109 ~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 157 (577)
+++..+|..|... -..-|......+-..|++.+|.++|+.-++.+-+|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3467777766554 334477777778888888888888888877766653
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.82 E-value=4e+02 Score=24.96 Aligned_cols=74 Identities=9% Similarity=0.176 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcC-CHHHHHHHHHhccCCChhhH
Q 037414 196 CAALVDMYAKCKVIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCG-SIDSAREIFDRMRQKNVISW 274 (577)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~~~~~~~~~~~~~ 274 (577)
...++.-|...|+.++|.+.++++..+.-. ...+..++..+.-+.. ..+.+..++..+.+.+..+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-------------~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~ 80 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-------------FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLST 80 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCH
Confidence 356788888889999999999988764211 1223333333332211 23445556666666677777
Q ss_pred HHHHHHHH
Q 037414 275 SAMIAAYG 282 (577)
Q Consensus 275 ~~li~~~~ 282 (577)
..+..||.
T Consensus 81 ~~~~~Gf~ 88 (339)
T 1ug3_A 81 AQYYQGLY 88 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776664
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.09 E-value=1.8e+02 Score=27.12 Aligned_cols=60 Identities=20% Similarity=0.116 Sum_probs=43.6
Q ss_pred HHhCCCCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCC
Q 037414 365 IESMSVEKDEG--LWGALLGACRIHKNVDLAEMAAKSLLERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRR 438 (577)
Q Consensus 365 ~~~m~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 438 (577)
|...+++|... +...-++.+.+++++..|..+.++++++.|+.. ..++|.+++..-.+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 33346666433 777778889999999999999999999987622 2355777777766554
No 307
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.12 E-value=93 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHH
Q 037414 254 GSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKAL 291 (577)
Q Consensus 254 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 291 (577)
...+.|.++++.++.++...|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887667655443
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.10 E-value=1.9e+02 Score=23.17 Aligned_cols=62 Identities=6% Similarity=0.000 Sum_probs=37.5
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 037414 296 MMLSSRVLPNRITFVSLLYACSHTGLVEEGLRLFSSMWDDFAVRPDVKHYTCMVDLLGRAGRLD 359 (577)
Q Consensus 296 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 359 (577)
.|.+.|++++..=. .++..+...+..-.|.++++.+.++ +...+..|..--++.+...|-+.
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 45566777665433 3444554455556677788877544 44455556556667777777654
No 309
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.00 E-value=1.3e+02 Score=30.32 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhHhcCC--CCCH--HHHH-HHHHHHHHcCCHHHHHHHHHhC
Q 037414 306 RITFVSLLYACSHTGLVEEGLRLFSSMWDDFAV--RPDV--KHYT-CMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 306 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~m 368 (577)
...++.++.-|...+.+++|..+..... +.. .++. ..|. .+...+.-.+++.+|.+.+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3456677777777777777777777662 110 0111 1121 2234455567777777766654
No 310
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.19 E-value=1.5e+02 Score=24.60 Aligned_cols=183 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHH--HHHHHHHHHhCC
Q 037414 130 VGGFSKVADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFV--CAALVDMYAKCK 207 (577)
Q Consensus 130 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g 207 (577)
+...+..|+.+....++..-...--.+|..-.+.|..++.... .++.+.+++.|..++... ....+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred CHHHHHHHHhhCCCCChhHHHHHHhcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHhc-cC---CChhhHHHHHHHHHH
Q 037414 208 VIDDARQLFDQMPTRDLVTWTVMIGANKFLLDVILGTAVIDMYAKCGSIDSAREIFDRM-RQ---KNVISWSAMIAAYGY 283 (577)
Q Consensus 208 ~~~~A~~~~~~m~~~~~~~~~~~i~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~ 283 (577)
+.+-+..+++.-. .............+...+..|+.+-+..+++.- .. +|..-++.+..+...
T Consensus 84 ~~~~~~~Ll~~~~-------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~ 150 (201)
T 3hra_A 84 RTEILAYMLKHAT-------------PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150 (201)
T ss_dssp CHHHHHHHHHHSC-------------CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred CHHHHHHHHhccC-------------cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Q ss_pred cCChHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHH
Q 037414 284 HGQGKKALDLFPMMLSSRVLPNRITFV--SLLYACSHTGLVEEGLRLFS 330 (577)
Q Consensus 284 ~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~ 330 (577)
......-.++.+.+.+.|..|+..... +.+......|..+-+..+++
T Consensus 151 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 151 REGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp SCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
No 311
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.37 E-value=3.2e+02 Score=23.45 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=41.6
Q ss_pred HHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCcchHHHHHHHHhcCCC-----hHHHHHHHHHHHHcCCCC
Q 037414 126 WSVMVGGFSK---VADFINCFETFREFIRCGMQLDSYTLPFVIRACRDRKD-----IVMGRLIHDIVLKSGLDI 191 (577)
Q Consensus 126 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~g~~~ 191 (577)
.--+|+++.+ -.+++.|+-.+.+|++.| .|.-..-..++-+.-.-|. +..|...++.....|.+-
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3445666644 578999999999999998 6655555555555544443 334555566666667543
No 312
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=23.36 E-value=17 Score=25.01 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=17.9
Q ss_pred eEEEecCCcccccccccccCCC
Q 037414 554 VIIVRDANRFHHFEGGACSCRD 575 (577)
Q Consensus 554 ~~~~~~~~~~h~~~~g~~s~~~ 575 (577)
.|=+.|.+..|+|+||+-+-+|
T Consensus 9 ~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 9 TYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEBTTSCEEEEETTSCEEEEC
T ss_pred eEecCCCcEEEEEcCCceehhh
Confidence 4668899999999999976544
No 313
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=23.33 E-value=27 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHHHHHHCCcccCCCcc
Q 037414 465 PQSEEIYRMLVTLSEKLELAGYIPDTNFE 493 (577)
Q Consensus 465 ~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 493 (577)
+...+++..+++..++++..|+.||-..+
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~ 41 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILF 41 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 45567788888888999999999998654
No 314
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=22.96 E-value=2.5e+02 Score=24.06 Aligned_cols=54 Identities=7% Similarity=0.139 Sum_probs=31.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhCCCHHHHHHHHhh
Q 037414 165 IRACRDRKDIVMGRLIHDIVLKSGLDIDQF--VCAALVDMYAKCKVIDDARQLFDQ 218 (577)
Q Consensus 165 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 218 (577)
+...+..|+.+.++.+++.+.+.|..++.. .....+...+..|+.+-+..+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 334455688888877777766666544321 112234445567777766666654
No 315
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=22.90 E-value=4.8e+02 Score=24.50 Aligned_cols=115 Identities=9% Similarity=0.007 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCCcchHHHHHHH
Q 037414 92 LIVANKLLYIYALHKALTDAHALFNGMKERDSVSWSVMVGGFSKVADFINCFETF----REFIRCGMQLDSYTLPFVIRA 167 (577)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~ 167 (577)
...+-++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+..-++..
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34778888999999999999998643 233566778876665554 555667888998888888887
Q ss_pred HhcCCChH-HHHHHHHHHHH----cC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 037414 168 CRDRKDIV-MGRLIHDIVLK----SG--LDIDQFVCAALVDMYAKCKVIDDARQLFD 217 (577)
Q Consensus 168 ~~~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (577)
+.....-+ .=..+.+.+++ .| ..-|......+...|.+.+++.+|+..|-
T Consensus 104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 76654321 11334444443 33 23467778888999999999999999884
No 316
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.76 E-value=2.8e+02 Score=26.08 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCC
Q 037414 95 ANKLLYIYALHKALTDAHALFNGMKERD---SVSWSVMVGGFSKVA-DFINCFETFREFIRCGMQ 155 (577)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 155 (577)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.. ..+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4668888989999999999999998763 222333333333222 234556677777766543
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=20.62 E-value=2.8e+02 Score=24.29 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcC--CCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCC
Q 037414 391 DLAEMAAKSLLERQ--PQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRL 439 (577)
Q Consensus 391 ~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 439 (577)
+....+|..|...+ ...+..|...+..+...|++.+|.++++.=++++-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 46668888887664 55677899999999999999999999987666554
No 318
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.29 E-value=3.6e+02 Score=25.04 Aligned_cols=76 Identities=8% Similarity=0.184 Sum_probs=55.4
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCcHHHHHHHHHH----HHhCCCHHHHHHHHhhC
Q 037414 144 ETFREFIRCGMQLDSYTLPFVIRACRDRKDIVMGRLIHDIVLKSGLDIDQFVCAALVDM----YAKCKVIDDARQLFDQM 219 (577)
Q Consensus 144 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~m 219 (577)
+++..+.+.|+.|..+++.-++..+++.=.++.+.++++.+...|...-..+.-+++.. ..++.+.++..+.++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 55667778899998889888998888888899999999999888754322333333332 23456788888888763
No 319
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.15 E-value=3.4e+02 Score=23.62 Aligned_cols=47 Identities=13% Similarity=0.266 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhHhcCCCCCH-HHH-----HHHHHHHHHcCCHHHHHHHHHhC
Q 037414 322 VEEGLRLFSSMWDDFAVRPDV-KHY-----TCMVDLLGRAGRLDEALKLIESM 368 (577)
Q Consensus 322 ~~~a~~~~~~m~~~~~~~p~~-~~~-----~~li~~~~~~g~~~~A~~~~~~m 368 (577)
++.|..+|+.+.+...+.... ... ...+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 566777777776553322211 111 12344677888899999988887
No 320
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.07 E-value=3e+02 Score=24.68 Aligned_cols=182 Identities=7% Similarity=-0.037 Sum_probs=93.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHHcCChHHHHHHHHHhhhCCCCCCHH---HHHHHHHHHhccCCHH
Q 037414 247 IDMYAKCGSIDSAREIFDRMRQKNVISWSAMIAAYGYHGQGKKALDLFPMMLSSRVLPNRI---TFVSLLYACSHTGLVE 323 (577)
Q Consensus 247 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~ 323 (577)
+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+..++ +.|..++.. -.+.|. ..+..|..+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~L~-~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTALY-YAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcHHH-HHHHcCCHH
Confidence 445567899988888887644332221122344445667765444443 445544421 222333 334567776
Q ss_pred HHHHHHHHhhHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037414 324 EGLRLFSSMWDDFAVRPDVK---HYTCMVDLLGRAGRLDEALKLIESMSVEKDEGLWGALLGACRIHKNVDLAEMAAKSL 400 (577)
Q Consensus 324 ~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 400 (577)
-...+++. |..++.. -+.+.+...+..|+.+-+.-+++.-....+...-.+.+......|+.+.+..+++.-
T Consensus 110 ~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 110 TVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 66655553 3333321 112344445667888777767666532223312233444556788888888777765
Q ss_pred HhcCCCCchhHHHHHHHHhccCChhHHHHHHHHHhhCCCccC
Q 037414 401 LERQPQNPGHYVLLSNVYANAGRWQDVAKIRDLMTRRRLKKI 442 (577)
Q Consensus 401 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 442 (577)
...+..+..-....+..-...|+. ++.+.+.+.|..+.
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIY 222 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCST
T ss_pred CCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCC
Confidence 554433221111111122234443 45556667776543
No 321
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=20.01 E-value=65 Score=21.48 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCcc
Q 037414 136 VADFINCFETFREFIRCG-MQLDSY 159 (577)
Q Consensus 136 ~g~~~~A~~~~~~m~~~g-~~p~~~ 159 (577)
.-+++.|+..|.++...| |+|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 567889999998887655 555543
Done!