BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037416
(362 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + +YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNDVAPNKPDE--RELARRTESYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E EK +WE+ + + L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPEKGLWENIVYLDYKSLYPSIIITHNVSPDTL-NREGCREYDVA 434
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + +YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNDVAPNKPDE--RELARRTESYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E EK +WE+ + + L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPEKGLWENIVYLDYKSLYPSIIITHNVSPDTL-NREGCREYDVA 434
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + +YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNELAPNKPDE--RELARRRESYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +WE+ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWENIVYLDFRSLYPSIIITHNVSPDTL-NREGCEEYDVA 434
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + +YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNELAPNKPDE--RELARRRESYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +WE+ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWENIVYLDFRSLYPSIIITHNVSPDTL-NREGCEEYDVA 434
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + +YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNELAPNKPDE--RELARRRESYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +WE+ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWENIVYLDFRSLYPSIIITHNVSPDTL-NREGCEEYDVA 434
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + +YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNELAPNKPDE--RELARRRESYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +WE+ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWENIVYLDFRSLYPSIIITHNVSPDTL-NREGCEEYDVA 434
>pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD +EL+ + +Y G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNELAPNKPDE--KELARRRQSYE----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +WE+ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWENIVYLDFRSLYPSIIITHNVSPDTL-NREGCKEYDVA 434
>pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase
Mutant
Length = 774
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD +EL+ + +Y G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYERNELAPNKPDE--KELARRRQSYE----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +WE+ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWENIVYLDFRSLYPSIIITHNVSPDTL-NREGCKEYDVA 434
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232
W VS+ +E+ + + R+ N PD EL+ + YA G ++
Sbjct: 342 WDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDE--RELARRRGGYA----------GGYV 389
Query: 233 YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
E E+ +W++ + R L+PSI+ +S D L N+E DVA
Sbjct: 390 KEPERGLWDNIVYLDFRSLYPSIIITHNVSPDTL-NREGCKEYDVA 434
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 18 DEVFQP------RDNKNQLVGVESTVDEIESLL-GVESKGVYALGIWGISGIGKTAIARA 70
D FQP +N Q +G + + + L +E+ ++++ +WG G GKT +A
Sbjct: 10 DNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEV 69
Query: 71 IFHKISGDFE-CSCFLENVRE 90
I + D E S V+E
Sbjct: 70 IARYANADVERISAVTSGVKE 90
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 56 IWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNV 115
++G G+GKT +A I H++ + + ++PG LA +L+N L++ ++
Sbjct: 43 LFGPPGLGKTTLAHVIAHELGVNLRVTSG-----PAIEKPGDLAA----ILANSLEEGDI 93
Query: 116 IPYIDLNFRRLSR 128
+ +ID RLSR
Sbjct: 94 L-FID-EIHRLSR 104
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 56 IWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNV 115
++G G+GKT +A I H++ + + ++PG LA +L+N L++ ++
Sbjct: 43 LFGPPGLGKTTLAHVIAHELGVNLRVTSG-----PAIEKPGDLAA----ILANSLEEGDI 93
Query: 116 IPYIDLNFRRLSR 128
+ +ID RLSR
Sbjct: 94 L-FID-EIHRLSR 104
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76
+N +++ + +D +E E KG+Y ++G GIGK+ + A+ H++S
Sbjct: 129 NNASRMEAFSAILDFVEQYPSAEQKGLY---LYGDMGIGKSYLLAAMAHELS 177
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 56 IWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNV 115
++G G+GKT +A I H++ + + ++PG LA +L+N L++ ++
Sbjct: 43 LFGPPGLGKTTLAHVIAHELGVNLRVTSG-----PAIEKPGDLAA----ILANSLEEGDI 93
Query: 116 IPYIDLNFRRLSR 128
+ +ID RLSR
Sbjct: 94 L-FID-EIHRLSR 104
>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
Steroid Sulfotransferase
pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
Arabidopsis Thaliana Putative Steroid Sulphotransferase
Length = 326
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 152 DRLTPVSRIIITTRNKQVLRNWGVSKIYEMQALEYHHALE---LFCRHAFKQNHPDV 205
+ LT +R +I++ K+ + W VS+IYE Q L + A+ L C+ F+ D+
Sbjct: 14 EDLTQETRALISSLPKE--KGWLVSEIYEFQGLWHTQAILQGILICQKRFEAKDSDI 68
>pdb|2Q6T|A Chain A, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|B Chain B, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|C Chain C, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
pdb|2Q6T|D Chain D, Crystal Structure Of The Thermus Aquaticus Dnab Monomer
Length = 444
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 2 ESELTNDVVNHILKRLDEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISG 61
E+ ++V+ + ++ +FQ NK ++ GV + E++ L+G G + I
Sbjct: 155 EARPMRELVHETFEHIEALFQ---NKGEVAGVRTGFKELDQLIGTLGPGSLNI-IAARPA 210
Query: 62 IGKTAIARAI 71
+GKTA A I
Sbjct: 211 MGKTAFALTI 220
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 47 ESKGVYALGIWGISGIGKTAIARAIFHKISGD 78
E+K +GI G +GIGKT AR + +I+ D
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITAD 321
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase
(coa Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 50 GVYALGIWGISGIGKTAIAR 69
G+Y LG+ GISG GK+++A+
Sbjct: 74 GLYVLGLTGISGSGKSSVAQ 93
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 41 ESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79
ESL + KGV ++G G GKT +ARA+ H F
Sbjct: 175 ESLGIAQPKGVI---LYGPPGTGKTLLARAVAHHTDCKF 210
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG----- 77
P + + VG + EI+ L+ +K + I G SG GK +AR I H+ SG
Sbjct: 124 PPQEEIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLI-HRYSGRKGAF 182
Query: 78 -DFECSCFLENVRE 90
D C+ + + E
Sbjct: 183 VDLNCASIPQELAE 196
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant)
Bound To A Dsdna, In Edition Mode
Length = 793
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 229 GCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
G ++ E EK +WE ++ R L+PSI+ +S D L N+E DVA
Sbjct: 409 GGYVKEPEKGLWEGIVSLDFRSLYPSIIITHNVSPDTL-NRENCKEYDVA 457
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLU|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLV|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLW|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLX|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLY|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLZ|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM0|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM1|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
Length = 793
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 229 GCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA 278
G ++ E EK +WE ++ R L+PSI+ +S D L N+E DVA
Sbjct: 409 GGYVKEPEKGLWEGIVSLDFRSLYPSIIITHNVSPDTL-NRENCKEYDVA 457
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 305 RVLVDKSLIAI------DSHKKITMLDLLQELGREIVRQESINPKNRSRLW 349
R++ DKS++AI DS + M++ QE RE+ ++N N +L+
Sbjct: 39 RLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
>pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 229 GCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLD 267
G F+ E EK +WE+ + R L+PSI+ +S D L+
Sbjct: 387 GGFVKEPEKGLWENIVYLDFRALYPSIIITHNVSPDTLN 425
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 305 RVLVDKSLIAI------DSHKKITMLDLLQELGREIVRQESINPKNRSRLW 349
R++ DKS++AI DS + M++ QE RE+ ++N N +L+
Sbjct: 39 RLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,483,971
Number of Sequences: 62578
Number of extensions: 420238
Number of successful extensions: 1088
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 28
length of query: 362
length of database: 14,973,337
effective HSP length: 100
effective length of query: 262
effective length of database: 8,715,537
effective search space: 2283470694
effective search space used: 2283470694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)