Query 037416
Match_columns 362
No_of_seqs 143 out of 1714
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.3E-45 1.8E-49 375.9 35.8 358 1-361 159-528 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.6E-39 1.4E-43 317.3 24.3 302 31-339 161-499 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.8E-37 1.9E-41 272.7 14.0 263 33-300 1-283 (287)
4 PRK04841 transcriptional regul 99.8 2.6E-19 5.6E-24 184.3 24.8 300 18-339 4-336 (903)
5 COG3899 Predicted ATPase [Gene 99.8 1.2E-18 2.6E-23 174.2 15.7 321 29-361 1-405 (849)
6 COG2909 MalT ATP-dependent tra 99.8 3.7E-17 8.1E-22 156.0 19.3 303 17-340 8-343 (894)
7 PRK00411 cdc6 cell division co 99.7 2.2E-14 4.8E-19 133.9 22.5 284 21-316 23-358 (394)
8 PF01637 Arch_ATPase: Archaeal 99.6 3.7E-15 8.1E-20 128.8 11.5 193 30-228 1-234 (234)
9 PRK00080 ruvB Holliday junctio 99.6 2.1E-14 4.6E-19 130.2 15.8 263 24-320 21-314 (328)
10 TIGR00635 ruvB Holliday juncti 99.6 6.5E-14 1.4E-18 126.1 18.7 259 28-322 4-295 (305)
11 TIGR02928 orc1/cdc6 family rep 99.6 7.4E-13 1.6E-17 122.4 23.1 284 22-317 9-351 (365)
12 TIGR03015 pepcterm_ATPase puta 99.5 1.8E-11 4E-16 108.2 22.2 177 49-232 41-242 (269)
13 PF05729 NACHT: NACHT domain 99.4 9.2E-12 2E-16 101.6 12.1 144 52-197 1-163 (166)
14 PRK06893 DNA replication initi 99.3 1.1E-10 2.3E-15 100.3 14.1 155 50-232 38-207 (229)
15 PF14516 AAA_35: AAA-like doma 99.3 1.8E-09 4E-14 97.8 22.2 203 23-235 6-246 (331)
16 COG2256 MGS1 ATPase related to 99.3 1.3E-10 2.8E-15 103.1 13.6 175 24-225 20-209 (436)
17 COG1474 CDC6 Cdc6-related prot 99.2 5.1E-09 1.1E-13 95.4 23.3 284 22-317 11-335 (366)
18 TIGR03420 DnaA_homol_Hda DnaA 99.2 5E-10 1.1E-14 96.3 14.8 176 27-232 14-205 (226)
19 PTZ00112 origin recognition co 99.2 1.3E-09 2.8E-14 106.1 18.0 283 18-316 745-1086(1164)
20 PRK12402 replication factor C 99.2 2.5E-09 5.4E-14 97.8 18.8 198 25-229 12-227 (337)
21 PRK00440 rfc replication facto 99.2 1.8E-09 3.8E-14 98.0 17.3 184 26-227 15-202 (319)
22 PRK13342 recombination factor 99.2 8.9E-10 1.9E-14 103.1 15.7 181 24-231 8-199 (413)
23 PF05496 RuvB_N: Holliday junc 99.2 3.8E-10 8.3E-15 93.6 11.3 183 23-234 19-227 (233)
24 PLN03025 replication factor C 99.2 3.6E-09 7.8E-14 95.7 18.6 187 24-228 9-200 (319)
25 PRK08727 hypothetical protein; 99.2 1.6E-09 3.5E-14 93.2 15.5 172 28-229 19-205 (233)
26 PRK07003 DNA polymerase III su 99.1 4.8E-09 1E-13 101.5 19.6 192 24-228 12-221 (830)
27 PRK05642 DNA replication initi 99.1 2.9E-09 6.3E-14 91.7 14.9 154 51-232 45-212 (234)
28 PRK08084 DNA replication initi 99.1 4.1E-09 8.8E-14 90.9 15.8 175 28-232 23-213 (235)
29 PF00308 Bac_DnaA: Bacterial d 99.1 2.3E-09 5E-14 91.2 14.1 187 27-232 8-212 (219)
30 COG2255 RuvB Holliday junction 99.1 1.8E-09 3.8E-14 91.7 11.9 266 23-322 21-317 (332)
31 PRK14961 DNA polymerase III su 99.1 1.2E-08 2.7E-13 93.7 18.6 196 25-229 13-221 (363)
32 PRK14960 DNA polymerase III su 99.1 1.6E-08 3.5E-13 96.8 19.7 191 24-227 11-218 (702)
33 PRK14087 dnaA chromosomal repl 99.1 4.8E-09 1E-13 98.6 16.0 189 29-232 117-323 (450)
34 PRK08903 DnaA regulatory inact 99.1 3.8E-09 8.3E-14 90.8 13.4 176 24-232 14-203 (227)
35 PRK14963 DNA polymerase III su 99.1 2.2E-08 4.7E-13 95.2 19.6 191 26-226 12-215 (504)
36 PRK04195 replication factor C 99.1 1.4E-08 3E-13 97.0 18.3 186 24-232 10-206 (482)
37 COG3903 Predicted ATPase [Gene 99.0 2.3E-10 5.1E-15 102.1 5.5 282 50-339 13-318 (414)
38 PRK09112 DNA polymerase III su 99.0 2.2E-08 4.7E-13 91.0 18.0 194 23-229 18-241 (351)
39 PRK14949 DNA polymerase III su 99.0 1E-08 2.2E-13 101.1 16.7 191 24-229 12-221 (944)
40 PF13173 AAA_14: AAA domain 99.0 2.8E-09 6E-14 82.9 10.2 120 51-189 2-127 (128)
41 PRK12323 DNA polymerase III su 99.0 1.4E-08 3.1E-13 96.9 16.4 193 24-228 12-225 (700)
42 PRK07471 DNA polymerase III su 99.0 1.9E-08 4E-13 91.9 16.6 198 23-229 14-239 (365)
43 PF13191 AAA_16: AAA ATPase do 99.0 2.5E-09 5.4E-14 88.9 8.8 50 29-78 1-51 (185)
44 PRK08691 DNA polymerase III su 99.0 4.2E-08 9.1E-13 94.8 17.9 193 24-229 12-221 (709)
45 PRK14951 DNA polymerase III su 99.0 1.8E-07 4E-12 90.4 21.8 192 25-228 13-225 (618)
46 TIGR02397 dnaX_nterm DNA polym 99.0 8.7E-08 1.9E-12 88.3 19.1 185 24-229 10-219 (355)
47 KOG2028 ATPase related to the 98.9 8.3E-09 1.8E-13 90.5 11.3 179 23-224 133-332 (554)
48 PRK07940 DNA polymerase III su 98.9 5.9E-08 1.3E-12 89.4 17.6 183 28-228 5-213 (394)
49 PRK06645 DNA polymerase III su 98.9 9.9E-08 2.1E-12 90.4 19.4 190 24-225 17-226 (507)
50 PRK14956 DNA polymerase III su 98.9 4.4E-08 9.6E-13 91.2 16.5 194 24-226 14-220 (484)
51 PRK00149 dnaA chromosomal repl 98.9 1.1E-07 2.4E-12 90.1 19.5 247 29-294 124-413 (450)
52 PRK14957 DNA polymerase III su 98.9 7.5E-08 1.6E-12 91.8 17.9 190 25-224 13-216 (546)
53 PRK14964 DNA polymerase III su 98.9 1E-07 2.3E-12 89.6 18.4 189 25-226 10-215 (491)
54 TIGR01242 26Sp45 26S proteasom 98.9 1.6E-08 3.4E-13 93.2 12.9 178 23-223 117-329 (364)
55 PRK14958 DNA polymerase III su 98.9 9.1E-08 2E-12 91.2 18.1 192 24-228 12-220 (509)
56 PRK14962 DNA polymerase III su 98.9 1.5E-07 3.2E-12 88.9 19.2 191 24-230 10-221 (472)
57 TIGR00678 holB DNA polymerase 98.9 1.6E-07 3.5E-12 78.3 16.9 159 39-223 3-186 (188)
58 PRK09087 hypothetical protein; 98.9 3.7E-08 8.1E-13 84.1 13.2 146 50-232 43-199 (226)
59 PRK13341 recombination factor 98.9 5.5E-08 1.2E-12 96.0 16.0 177 24-226 24-215 (725)
60 PRK07994 DNA polymerase III su 98.9 6.9E-08 1.5E-12 93.5 16.4 193 24-229 12-221 (647)
61 PRK14955 DNA polymerase III su 98.9 1.3E-07 2.9E-12 87.9 17.7 198 24-228 12-228 (397)
62 PRK14088 dnaA chromosomal repl 98.9 1.9E-07 4.2E-12 87.8 18.8 183 29-230 107-307 (440)
63 PRK05564 DNA polymerase III su 98.9 1.6E-07 3.4E-12 84.8 17.4 177 28-228 4-190 (313)
64 KOG0989 Replication factor C, 98.9 2.3E-08 5E-13 85.9 11.1 185 24-227 32-229 (346)
65 PRK14950 DNA polymerase III su 98.9 1.4E-07 2.9E-12 92.1 17.4 195 24-230 12-223 (585)
66 PRK14086 dnaA chromosomal repl 98.9 3.4E-07 7.3E-12 87.7 19.5 184 29-231 290-491 (617)
67 PRK05896 DNA polymerase III su 98.8 1.6E-07 3.4E-12 89.9 16.7 189 24-225 12-217 (605)
68 PRK14970 DNA polymerase III su 98.8 3.2E-07 7E-12 84.8 18.4 183 24-226 13-207 (367)
69 cd00009 AAA The AAA+ (ATPases 98.8 4.3E-08 9.4E-13 77.8 11.0 53 31-85 1-53 (151)
70 TIGR00362 DnaA chromosomal rep 98.8 1.5E-07 3.3E-12 88.1 16.3 184 29-231 112-313 (405)
71 TIGR02639 ClpA ATP-dependent C 98.8 7.1E-08 1.5E-12 96.6 14.6 180 23-220 177-383 (731)
72 PRK14952 DNA polymerase III su 98.8 4.1E-07 8.8E-12 87.7 18.4 188 24-224 9-215 (584)
73 PRK14969 DNA polymerase III su 98.8 1.6E-07 3.6E-12 90.0 15.7 188 25-225 13-217 (527)
74 PRK14953 DNA polymerase III su 98.8 1.6E-06 3.4E-11 82.3 22.1 194 24-229 12-221 (486)
75 PRK07764 DNA polymerase III su 98.8 2.9E-07 6.3E-12 92.1 17.5 187 26-225 13-218 (824)
76 TIGR03345 VI_ClpV1 type VI sec 98.8 3.8E-08 8.1E-13 99.4 11.0 184 23-224 182-392 (852)
77 PRK03992 proteasome-activating 98.8 1.9E-07 4.1E-12 86.6 14.7 177 25-224 128-339 (389)
78 PTZ00202 tuzin; Provisional 98.8 5.4E-08 1.2E-12 88.4 10.6 164 22-197 256-434 (550)
79 PRK09111 DNA polymerase III su 98.8 4.2E-07 9.1E-12 88.1 17.1 193 25-229 21-234 (598)
80 PF13401 AAA_22: AAA domain; P 98.8 2.3E-08 5E-13 78.0 7.0 110 50-166 3-125 (131)
81 PF10443 RNA12: RNA12 protein; 98.7 2.2E-06 4.7E-11 78.1 20.1 194 129-336 148-394 (431)
82 PRK14959 DNA polymerase III su 98.7 1.5E-06 3.3E-11 83.6 20.0 196 24-232 12-225 (624)
83 PRK08451 DNA polymerase III su 98.7 9.5E-07 2.1E-11 84.0 18.4 189 25-229 11-219 (535)
84 PRK06305 DNA polymerase III su 98.7 1.6E-06 3.4E-11 81.8 19.5 192 25-226 14-220 (451)
85 PRK06620 hypothetical protein; 98.7 2.5E-07 5.3E-12 78.4 12.7 166 26-231 15-192 (214)
86 PRK07133 DNA polymerase III su 98.7 5.7E-07 1.2E-11 87.9 16.8 193 24-227 14-218 (725)
87 PHA02544 44 clamp loader, smal 98.7 3.6E-07 7.7E-12 82.8 14.3 178 24-223 17-204 (316)
88 COG0593 DnaA ATPase involved i 98.7 8.5E-07 1.8E-11 81.0 15.8 183 28-228 88-286 (408)
89 PRK05563 DNA polymerase III su 98.7 1.8E-06 3.8E-11 83.6 19.0 189 24-226 12-218 (559)
90 PRK06647 DNA polymerase III su 98.7 2.3E-06 5.1E-11 82.5 19.7 194 24-228 12-220 (563)
91 TIGR02881 spore_V_K stage V sp 98.7 4.5E-07 9.8E-12 79.6 13.6 133 50-199 41-193 (261)
92 PRK14954 DNA polymerase III su 98.7 1.1E-06 2.3E-11 85.5 17.1 196 24-226 12-226 (620)
93 PRK14971 DNA polymerase III su 98.7 4.4E-06 9.5E-11 81.6 21.2 191 24-226 13-220 (614)
94 PRK12422 chromosomal replicati 98.7 9.9E-07 2.1E-11 82.9 16.0 179 28-225 112-310 (445)
95 CHL00095 clpC Clp protease ATP 98.7 4.3E-07 9.3E-12 92.2 14.5 176 27-220 178-379 (821)
96 PRK14948 DNA polymerase III su 98.7 1.2E-06 2.5E-11 85.6 16.8 195 24-230 12-224 (620)
97 COG1373 Predicted ATPase (AAA+ 98.6 2.1E-06 4.6E-11 79.7 16.8 240 31-314 20-268 (398)
98 TIGR03346 chaperone_ClpB ATP-d 98.6 1.2E-06 2.5E-11 89.3 15.7 156 23-196 168-348 (852)
99 PRK10865 protein disaggregatio 98.6 2E-06 4.4E-11 87.3 16.9 157 23-197 173-354 (857)
100 COG3267 ExeA Type II secretory 98.6 5.9E-06 1.3E-10 69.7 16.3 179 48-232 48-249 (269)
101 PTZ00454 26S protease regulato 98.6 1.9E-06 4.2E-11 79.6 14.9 179 23-224 140-353 (398)
102 KOG2543 Origin recognition com 98.6 1.3E-06 2.8E-11 77.5 12.4 163 26-196 4-192 (438)
103 KOG2227 Pre-initiation complex 98.5 9.7E-06 2.1E-10 73.9 18.2 201 25-233 147-373 (529)
104 PF05673 DUF815: Protein of un 98.5 5.4E-06 1.2E-10 70.1 15.4 121 23-167 22-151 (249)
105 PRK14965 DNA polymerase III su 98.5 4.5E-06 9.8E-11 81.2 17.1 187 25-224 13-216 (576)
106 PRK05707 DNA polymerase III su 98.5 4.7E-06 1E-10 75.2 15.6 164 49-228 20-203 (328)
107 PRK11034 clpA ATP-dependent Cl 98.5 2.1E-06 4.6E-11 85.4 13.9 152 28-197 186-362 (758)
108 PRK07399 DNA polymerase III su 98.5 5.5E-06 1.2E-10 74.3 15.2 191 28-230 4-223 (314)
109 PTZ00361 26 proteosome regulat 98.5 2.5E-06 5.4E-11 79.5 12.9 179 23-224 178-391 (438)
110 CHL00195 ycf46 Ycf46; Provisio 98.5 9.1E-06 2E-10 77.0 16.7 176 28-224 228-431 (489)
111 PF00004 AAA: ATPase family as 98.5 2.1E-06 4.5E-11 66.9 10.2 23 54-76 1-23 (132)
112 TIGR02880 cbbX_cfxQ probable R 98.4 1.2E-05 2.6E-10 71.3 16.1 151 30-199 24-210 (284)
113 TIGR00602 rad24 checkpoint pro 98.4 3.2E-06 6.9E-11 82.2 12.4 53 24-76 80-135 (637)
114 TIGR03689 pup_AAA proteasome A 98.4 7.8E-06 1.7E-10 77.4 14.7 161 23-197 177-378 (512)
115 CHL00176 ftsH cell division pr 98.4 6.7E-06 1.4E-10 80.4 14.1 172 28-222 183-388 (638)
116 TIGR01241 FtsH_fam ATP-depende 98.4 8.1E-06 1.8E-10 78.4 14.6 179 27-228 54-267 (495)
117 CHL00181 cbbX CbbX; Provisiona 98.4 2.3E-05 4.9E-10 69.6 16.2 131 52-199 60-211 (287)
118 TIGR02903 spore_lon_C ATP-depe 98.4 8.6E-06 1.9E-10 79.8 14.5 50 24-75 150-199 (615)
119 COG1222 RPT1 ATP-dependent 26S 98.3 1.8E-05 3.9E-10 69.9 14.2 179 23-224 146-359 (406)
120 KOG0991 Replication factor C, 98.3 3.7E-06 7.9E-11 69.7 9.3 156 26-197 25-185 (333)
121 PRK08769 DNA polymerase III su 98.3 4.9E-05 1.1E-09 68.1 17.1 182 37-229 13-209 (319)
122 PRK10536 hypothetical protein; 98.3 5E-06 1.1E-10 71.2 10.0 135 28-167 55-213 (262)
123 PF05621 TniB: Bacterial TniB 98.3 2.5E-05 5.4E-10 68.3 13.9 195 28-229 34-262 (302)
124 PRK06871 DNA polymerase III su 98.3 9.6E-05 2.1E-09 66.4 17.8 170 38-225 12-200 (325)
125 PRK12377 putative replication 98.3 3.9E-06 8.4E-11 72.4 8.5 101 50-166 100-205 (248)
126 TIGR01243 CDC48 AAA family ATP 98.3 2E-05 4.3E-10 79.4 14.6 175 28-224 178-383 (733)
127 PRK07993 DNA polymerase III su 98.2 8.8E-05 1.9E-09 67.2 17.1 170 38-226 12-202 (334)
128 COG2812 DnaX DNA polymerase II 98.2 4.8E-06 1E-10 78.4 8.7 188 28-224 16-216 (515)
129 PRK08116 hypothetical protein; 98.2 9.5E-06 2.1E-10 71.2 9.9 103 51-167 114-221 (268)
130 PRK08181 transposase; Validate 98.2 3.9E-06 8.4E-11 73.3 7.1 100 51-167 106-209 (269)
131 cd01128 rho_factor Transcripti 98.2 4.9E-06 1.1E-10 71.9 7.4 87 50-139 15-113 (249)
132 PRK06090 DNA polymerase III su 98.2 0.0003 6.5E-09 63.0 18.6 170 38-229 13-202 (319)
133 TIGR03345 VI_ClpV1 type VI sec 98.2 3.5E-05 7.7E-10 78.3 13.8 52 27-78 565-623 (852)
134 PRK08058 DNA polymerase III su 98.2 0.00011 2.4E-09 66.7 15.7 154 30-195 7-180 (329)
135 TIGR01243 CDC48 AAA family ATP 98.2 5.9E-05 1.3E-09 76.0 15.3 178 29-229 454-665 (733)
136 TIGR03346 chaperone_ClpB ATP-d 98.1 6E-05 1.3E-09 77.0 15.3 52 27-78 564-622 (852)
137 TIGR02640 gas_vesic_GvpN gas v 98.1 8.5E-05 1.8E-09 65.2 14.0 24 52-75 22-45 (262)
138 PRK07952 DNA replication prote 98.1 2.1E-05 4.6E-10 67.7 10.0 88 37-139 85-172 (244)
139 PRK11331 5-methylcytosine-spec 98.1 8.7E-06 1.9E-10 75.3 7.9 55 28-86 175-231 (459)
140 PLN00020 ribulose bisphosphate 98.1 9.8E-05 2.1E-09 66.3 14.2 154 49-223 146-333 (413)
141 KOG0733 Nuclear AAA ATPase (VC 98.1 8.1E-05 1.7E-09 70.2 13.8 173 29-224 191-398 (802)
142 PRK09376 rho transcription ter 98.1 7.6E-06 1.6E-10 74.1 7.0 96 40-139 159-266 (416)
143 PRK10865 protein disaggregatio 98.1 8.7E-05 1.9E-09 75.7 15.2 51 28-78 568-625 (857)
144 KOG0730 AAA+-type ATPase [Post 98.1 2.8E-05 6E-10 73.9 10.3 153 49-224 466-639 (693)
145 COG0470 HolB ATPase involved i 98.1 8.6E-05 1.9E-09 67.4 13.5 148 29-190 2-174 (325)
146 COG0542 clpA ATP-binding subun 98.1 6.1E-05 1.3E-09 74.1 12.8 153 25-196 167-345 (786)
147 PF01695 IstB_IS21: IstB-like 98.1 4.7E-06 1E-10 68.5 4.5 37 50-86 46-82 (178)
148 smart00382 AAA ATPases associa 98.1 1.5E-05 3.3E-10 62.5 7.3 35 51-85 2-36 (148)
149 KOG2228 Origin recognition com 98.1 3.8E-05 8.3E-10 67.3 10.1 169 28-197 24-219 (408)
150 PRK06526 transposase; Provisio 98.1 6.6E-06 1.4E-10 71.5 5.6 29 50-78 97-125 (254)
151 PRK06835 DNA replication prote 98.1 7.8E-06 1.7E-10 73.6 6.1 36 51-86 183-218 (329)
152 KOG1514 Origin recognition com 98.1 0.00017 3.6E-09 69.2 15.1 200 24-231 392-624 (767)
153 PRK06964 DNA polymerase III su 98.0 0.00039 8.4E-09 63.0 16.8 91 129-229 132-226 (342)
154 COG0466 Lon ATP-dependent Lon 98.0 4.5E-05 9.8E-10 73.2 11.2 161 27-198 322-509 (782)
155 TIGR00767 rho transcription te 98.0 1.7E-05 3.7E-10 72.2 8.1 87 50-139 167-265 (415)
156 PF03215 Rad17: Rad17 cell cyc 98.0 7E-05 1.5E-09 71.5 12.4 58 26-85 17-77 (519)
157 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00012 2.5E-09 68.4 13.1 46 30-75 84-134 (634)
158 TIGR02639 ClpA ATP-dependent C 98.0 9.1E-05 2E-09 74.6 13.6 50 27-76 453-509 (731)
159 PF13177 DNA_pol3_delta2: DNA 98.0 9.5E-05 2.1E-09 59.8 11.2 138 32-185 1-162 (162)
160 PRK08939 primosomal protein Dn 98.0 3.3E-05 7.2E-10 69.0 9.3 118 32-166 135-260 (306)
161 TIGR00763 lon ATP-dependent pr 98.0 4.7E-05 1E-09 77.1 11.4 51 29-79 321-375 (775)
162 KOG0735 AAA+-type ATPase [Post 98.0 6.9E-05 1.5E-09 71.8 11.6 156 50-222 430-609 (952)
163 KOG2035 Replication factor C, 98.0 0.00043 9.3E-09 59.2 15.1 210 28-249 13-260 (351)
164 TIGR02902 spore_lonB ATP-depen 98.0 8.2E-05 1.8E-09 71.8 12.3 48 26-75 63-110 (531)
165 PRK09183 transposase/IS protei 98.0 1.9E-05 4.1E-10 69.0 6.5 28 51-78 102-129 (259)
166 PRK06921 hypothetical protein; 97.9 1.6E-05 3.4E-10 69.7 5.6 37 50-86 116-153 (266)
167 KOG0744 AAA+-type ATPase [Post 97.9 1.1E-05 2.4E-10 70.1 4.4 25 51-75 177-201 (423)
168 PRK08699 DNA polymerase III su 97.9 0.00048 1E-08 62.2 15.1 87 129-225 113-203 (325)
169 PF07693 KAP_NTPase: KAP famil 97.9 0.0011 2.5E-08 60.1 17.9 46 33-78 1-47 (325)
170 PRK10787 DNA-binding ATP-depen 97.9 0.00017 3.7E-09 72.6 13.2 159 28-197 322-506 (784)
171 COG1484 DnaC DNA replication p 97.9 2.9E-05 6.2E-10 67.6 6.4 36 50-85 104-139 (254)
172 PF04665 Pox_A32: Poxvirus A32 97.9 3.5E-05 7.6E-10 65.7 6.7 34 53-86 15-48 (241)
173 KOG0741 AAA+-type ATPase [Post 97.9 0.00058 1.3E-08 63.5 14.7 130 49-196 536-685 (744)
174 KOG0743 AAA+-type ATPase [Post 97.9 0.00099 2.1E-08 61.1 15.9 122 51-199 235-385 (457)
175 PRK04132 replication factor C 97.8 0.00038 8.2E-09 69.9 14.2 158 56-230 569-733 (846)
176 COG1223 Predicted ATPase (AAA+ 97.8 0.0003 6.5E-09 59.7 11.4 172 28-222 121-319 (368)
177 KOG1969 DNA replication checkp 97.8 5.9E-05 1.3E-09 72.5 7.7 73 48-139 323-397 (877)
178 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00021 4.5E-09 67.5 11.1 153 51-224 545-720 (802)
179 COG0542 clpA ATP-binding subun 97.8 7.6E-05 1.6E-09 73.4 8.6 114 28-152 491-618 (786)
180 PRK11889 flhF flagellar biosyn 97.8 0.00017 3.6E-09 65.7 10.1 36 50-85 240-275 (436)
181 TIGR01650 PD_CobS cobaltochela 97.8 0.00027 5.9E-09 63.0 11.4 49 27-79 44-92 (327)
182 PF14532 Sigma54_activ_2: Sigm 97.8 2.5E-05 5.3E-10 61.5 4.1 46 31-76 1-46 (138)
183 PF02562 PhoH: PhoH-like prote 97.8 2.6E-05 5.7E-10 64.9 4.2 127 32-166 4-155 (205)
184 COG2607 Predicted ATPase (AAA+ 97.8 0.00025 5.4E-09 59.4 9.8 115 29-167 61-184 (287)
185 KOG0735 AAA+-type ATPase [Post 97.8 0.00028 6E-09 67.8 11.3 151 51-224 701-872 (952)
186 PRK12608 transcription termina 97.8 0.00015 3.3E-09 65.7 9.1 99 36-138 119-229 (380)
187 CHL00095 clpC Clp protease ATP 97.8 0.00018 4E-09 73.3 10.9 52 27-78 508-566 (821)
188 PRK05022 anaerobic nitric oxid 97.8 0.0011 2.5E-08 63.9 15.7 51 26-76 185-235 (509)
189 cd01131 PilT Pilus retraction 97.8 7.7E-05 1.7E-09 62.6 6.8 108 52-167 2-109 (198)
190 PRK11034 clpA ATP-dependent Cl 97.7 0.00038 8.3E-09 69.6 12.5 49 28-76 458-513 (758)
191 PRK11608 pspF phage shock prot 97.7 0.0012 2.5E-08 59.9 14.7 47 28-74 6-52 (326)
192 PHA02244 ATPase-like protein 97.7 0.0001 2.2E-09 66.5 7.6 50 27-76 95-144 (383)
193 KOG2004 Mitochondrial ATP-depe 97.7 0.0007 1.5E-08 65.2 13.0 52 28-79 411-466 (906)
194 PF10236 DAP3: Mitochondrial r 97.7 0.00094 2E-08 60.0 13.4 48 178-225 258-306 (309)
195 PHA00729 NTP-binding motif con 97.7 0.00016 3.4E-09 61.1 7.7 28 49-76 15-42 (226)
196 KOG0731 AAA+-type ATPase conta 97.7 0.00076 1.7E-08 66.2 13.4 176 28-225 311-521 (774)
197 PRK00771 signal recognition pa 97.7 0.00044 9.5E-09 64.7 11.5 29 50-78 94-122 (437)
198 CHL00206 ycf2 Ycf2; Provisiona 97.7 0.00031 6.7E-09 74.8 11.4 26 50-75 1629-1654(2281)
199 smart00763 AAA_PrkA PrkA AAA d 97.7 5.1E-05 1.1E-09 68.4 5.1 56 22-77 45-104 (361)
200 TIGR02974 phageshock_pspF psp 97.7 0.00071 1.5E-08 61.4 12.5 46 30-75 1-46 (329)
201 TIGR01817 nifA Nif-specific re 97.7 0.00077 1.7E-08 65.6 13.7 52 25-76 193-244 (534)
202 PRK14974 cell division protein 97.7 0.00072 1.6E-08 61.1 12.3 29 50-78 139-167 (336)
203 PRK15429 formate hydrogenlyase 97.7 0.0031 6.7E-08 63.3 18.1 49 28-76 376-424 (686)
204 PRK10733 hflB ATP-dependent me 97.7 0.00056 1.2E-08 67.7 12.5 151 51-224 185-359 (644)
205 PF13207 AAA_17: AAA domain; P 97.6 4.7E-05 1E-09 58.3 3.4 23 53-75 1-23 (121)
206 COG1066 Sms Predicted ATP-depe 97.6 0.00041 9E-09 62.7 9.4 93 37-138 79-177 (456)
207 PF07728 AAA_5: AAA domain (dy 97.6 3.3E-05 7.1E-10 60.9 2.3 22 54-75 2-23 (139)
208 PRK13531 regulatory ATPase Rav 97.6 0.00015 3.2E-09 67.9 6.7 60 5-77 6-65 (498)
209 KOG0734 AAA+-type ATPase conta 97.6 0.00074 1.6E-08 63.0 10.9 147 34-199 313-486 (752)
210 cd01121 Sms Sms (bacterial rad 97.6 0.00042 9.1E-09 63.6 9.5 94 37-138 68-167 (372)
211 PRK06696 uridine kinase; Valid 97.6 0.00013 2.7E-09 62.5 5.7 47 32-78 2-49 (223)
212 COG0464 SpoVK ATPases of the A 97.6 0.001 2.2E-08 64.2 12.5 150 50-220 275-445 (494)
213 PRK04296 thymidine kinase; Pro 97.6 0.00012 2.6E-09 60.9 5.2 106 52-167 3-116 (190)
214 PRK12723 flagellar biosynthesi 97.6 0.00067 1.5E-08 62.5 10.5 27 50-76 173-199 (388)
215 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.00021 4.6E-09 57.0 6.2 114 52-167 3-138 (159)
216 PRK12726 flagellar biosynthesi 97.5 0.0013 2.9E-08 59.7 11.5 37 50-86 205-241 (407)
217 PRK08118 topology modulation p 97.5 0.00042 9.2E-09 56.3 7.5 32 53-84 3-37 (167)
218 TIGR01420 pilT_fam pilus retra 97.5 0.00021 4.6E-09 65.3 6.3 95 50-149 121-215 (343)
219 PF13604 AAA_30: AAA domain; P 97.5 0.00052 1.1E-08 57.4 7.9 110 38-165 8-129 (196)
220 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00035 7.6E-09 63.9 7.2 102 49-165 60-166 (362)
221 PF02456 Adeno_IVa2: Adenoviru 97.5 0.00091 2E-08 58.1 9.2 36 51-86 87-124 (369)
222 KOG0652 26S proteasome regulat 97.5 0.0048 1E-07 52.5 13.2 54 23-76 166-230 (424)
223 PRK12724 flagellar biosynthesi 97.4 0.0015 3.2E-08 60.3 10.9 25 51-75 223-247 (432)
224 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00053 1.1E-08 59.8 7.6 55 50-107 68-122 (274)
225 PRK07667 uridine kinase; Provi 97.4 0.00039 8.4E-09 58.1 6.3 41 37-77 3-43 (193)
226 KOG0736 Peroxisome assembly fa 97.4 0.029 6.2E-07 55.0 19.2 73 50-142 704-777 (953)
227 PRK11388 DNA-binding transcrip 97.4 0.0048 1.1E-07 61.5 14.8 49 27-75 324-372 (638)
228 PRK11823 DNA repair protein Ra 97.4 0.0012 2.5E-08 62.5 9.7 94 37-138 66-165 (446)
229 PRK14722 flhF flagellar biosyn 97.4 0.0012 2.5E-08 60.4 9.2 28 50-77 136-163 (374)
230 PRK05703 flhF flagellar biosyn 97.4 0.0023 5E-08 60.0 11.4 36 51-86 221-258 (424)
231 PF03308 ArgK: ArgK protein; 97.4 0.00055 1.2E-08 58.5 6.5 56 36-92 14-69 (266)
232 TIGR00416 sms DNA repair prote 97.4 0.0012 2.5E-08 62.6 9.5 50 37-86 80-129 (454)
233 COG4088 Predicted nucleotide k 97.3 0.00037 8.1E-09 57.0 5.1 28 52-79 2-29 (261)
234 cd01393 recA_like RecA is a b 97.3 0.0013 2.7E-08 56.5 8.8 48 39-86 7-60 (226)
235 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00032 6.9E-09 61.5 5.1 102 36-150 68-170 (264)
236 PRK10867 signal recognition pa 97.3 0.0034 7.4E-08 58.7 12.0 29 50-78 99-127 (433)
237 PRK10820 DNA-binding transcrip 97.3 0.0066 1.4E-07 58.8 14.4 49 26-74 202-250 (520)
238 KOG0739 AAA+-type ATPase [Post 97.3 0.0039 8.5E-08 54.1 10.9 179 23-224 128-337 (439)
239 PF00448 SRP54: SRP54-type pro 97.3 0.00076 1.6E-08 56.3 6.5 56 51-110 1-56 (196)
240 TIGR00708 cobA cob(I)alamin ad 97.3 0.0014 3E-08 53.1 7.6 116 50-167 4-140 (173)
241 PF00910 RNA_helicase: RNA hel 97.3 0.00018 3.9E-09 53.8 2.3 25 54-78 1-25 (107)
242 TIGR00064 ftsY signal recognit 97.2 0.00093 2E-08 58.8 7.1 29 50-78 71-99 (272)
243 COG1618 Predicted nucleotide k 97.2 0.00036 7.7E-09 54.9 3.9 31 52-82 6-37 (179)
244 COG2805 PilT Tfp pilus assembl 97.2 0.0015 3.2E-08 56.8 8.0 95 49-148 123-217 (353)
245 KOG0737 AAA+-type ATPase [Post 97.2 0.0026 5.7E-08 56.8 9.7 154 51-231 127-306 (386)
246 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0013 2.8E-08 56.8 7.8 48 39-86 7-60 (235)
247 PRK15455 PrkA family serine pr 97.2 0.00038 8.2E-09 66.3 4.6 50 29-78 77-130 (644)
248 PF13238 AAA_18: AAA domain; P 97.2 0.00028 6E-09 54.5 3.2 22 54-75 1-22 (129)
249 cd03214 ABC_Iron-Siderophores_ 97.2 0.0029 6.3E-08 52.1 9.2 118 50-171 24-162 (180)
250 cd01394 radB RadB. The archaea 97.2 0.00087 1.9E-08 57.2 6.1 49 38-86 6-54 (218)
251 TIGR02237 recomb_radB DNA repa 97.2 0.0006 1.3E-08 57.7 5.0 38 49-86 10-47 (209)
252 TIGR02524 dot_icm_DotB Dot/Icm 97.2 0.00075 1.6E-08 61.7 5.9 96 50-149 133-232 (358)
253 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0027 5.9E-08 50.2 8.3 104 50-172 25-132 (144)
254 COG0465 HflB ATP-dependent Zn 97.1 0.0051 1.1E-07 59.2 11.4 177 26-224 148-357 (596)
255 PRK09361 radB DNA repair and r 97.1 0.00099 2.2E-08 57.1 6.0 48 39-86 11-58 (225)
256 TIGR03499 FlhF flagellar biosy 97.1 0.002 4.3E-08 57.2 8.0 28 50-77 193-220 (282)
257 PRK07132 DNA polymerase III su 97.1 0.056 1.2E-06 48.2 16.9 159 37-220 5-177 (299)
258 COG1703 ArgK Putative periplas 97.1 0.0011 2.5E-08 57.5 6.0 55 37-92 37-91 (323)
259 PRK05541 adenylylsulfate kinas 97.1 0.00067 1.5E-08 55.7 4.4 36 50-85 6-41 (176)
260 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00076 1.6E-08 52.1 4.3 41 36-76 7-47 (133)
261 PF00485 PRK: Phosphoribulokin 97.1 0.00052 1.1E-08 57.4 3.6 26 53-78 1-26 (194)
262 PF00625 Guanylate_kin: Guanyl 97.1 0.00065 1.4E-08 56.2 4.1 36 51-86 2-37 (183)
263 COG1419 FlhF Flagellar GTP-bin 97.1 0.007 1.5E-07 55.2 10.9 36 51-86 203-240 (407)
264 PF00158 Sigma54_activat: Sigm 97.1 0.00081 1.8E-08 54.6 4.5 46 30-75 1-46 (168)
265 KOG0738 AAA+-type ATPase [Post 97.1 0.013 2.9E-07 52.8 12.2 53 26-78 210-272 (491)
266 KOG0727 26S proteasome regulat 97.0 0.0012 2.5E-08 55.9 5.3 50 30-79 157-217 (408)
267 PRK07261 topology modulation p 97.0 0.0005 1.1E-08 56.1 3.2 23 53-75 2-24 (171)
268 PF13671 AAA_33: AAA domain; P 97.0 0.00054 1.2E-08 54.1 3.3 24 53-76 1-24 (143)
269 PF01583 APS_kinase: Adenylyls 97.0 0.001 2.2E-08 52.9 4.8 35 51-85 2-36 (156)
270 PF07726 AAA_3: ATPase family 97.0 0.00048 1E-08 52.4 2.7 28 54-81 2-29 (131)
271 COG5635 Predicted NTPase (NACH 97.0 0.0013 2.8E-08 67.3 6.7 182 51-233 222-427 (824)
272 PF00437 T2SE: Type II/IV secr 97.0 0.00066 1.4E-08 60.0 4.1 112 29-148 105-216 (270)
273 cd03247 ABCC_cytochrome_bd The 97.0 0.0035 7.6E-08 51.6 8.1 27 50-76 27-53 (178)
274 PF08433 KTI12: Chromatin asso 97.0 0.00015 3.3E-09 63.5 -0.0 27 52-78 2-28 (270)
275 COG0467 RAD55 RecA-superfamily 97.0 0.0013 2.8E-08 57.8 5.6 47 40-86 12-58 (260)
276 PRK05480 uridine/cytidine kina 97.0 0.00077 1.7E-08 57.1 4.1 27 49-75 4-30 (209)
277 PF08298 AAA_PrkA: PrkA AAA do 97.0 0.0023 4.9E-08 57.4 7.1 56 23-78 56-115 (358)
278 PRK08233 hypothetical protein; 97.0 0.00069 1.5E-08 55.9 3.6 26 51-76 3-28 (182)
279 PRK10923 glnG nitrogen regulat 97.0 0.024 5.1E-07 54.4 14.7 48 28-75 138-185 (469)
280 PF06068 TIP49: TIP49 C-termin 97.0 0.00099 2.2E-08 59.9 4.7 59 23-81 19-80 (398)
281 cd03216 ABC_Carb_Monos_I This 97.0 0.0013 2.8E-08 53.3 5.1 115 50-172 25-147 (163)
282 COG1875 NYN ribonuclease and A 97.0 0.0027 5.9E-08 56.7 7.3 133 31-166 227-387 (436)
283 cd02019 NK Nucleoside/nucleoti 97.0 0.0007 1.5E-08 46.1 3.0 23 53-75 1-23 (69)
284 PRK06762 hypothetical protein; 97.0 0.00074 1.6E-08 54.9 3.7 25 51-75 2-26 (166)
285 PRK05917 DNA polymerase III su 97.0 0.048 1E-06 48.2 15.1 127 37-184 6-154 (290)
286 PRK13765 ATP-dependent proteas 97.0 0.0011 2.5E-08 64.8 5.5 61 23-87 26-87 (637)
287 PTZ00301 uridine kinase; Provi 97.0 0.00079 1.7E-08 56.8 3.8 27 51-77 3-29 (210)
288 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0016 3.4E-08 56.4 5.8 49 38-86 8-56 (237)
289 PTZ00494 tuzin-like protein; P 97.0 0.0027 5.8E-08 58.4 7.3 62 22-86 365-427 (664)
290 PF12775 AAA_7: P-loop contain 97.0 0.00068 1.5E-08 59.7 3.5 28 50-77 32-59 (272)
291 TIGR00390 hslU ATP-dependent p 97.0 0.00097 2.1E-08 61.3 4.5 51 28-78 12-74 (441)
292 PRK05986 cob(I)alamin adenolsy 97.0 0.0015 3.2E-08 53.7 5.1 116 50-167 21-158 (191)
293 TIGR01425 SRP54_euk signal rec 96.9 0.01 2.2E-07 55.3 11.2 29 50-78 99-127 (429)
294 PRK09270 nucleoside triphospha 96.9 0.0013 2.8E-08 56.5 5.1 30 49-78 31-60 (229)
295 PF13245 AAA_19: Part of AAA d 96.9 0.00088 1.9E-08 46.5 3.2 26 50-75 9-34 (76)
296 COG0563 Adk Adenylate kinase a 96.9 0.0017 3.6E-08 53.3 5.4 23 53-75 2-24 (178)
297 PRK06547 hypothetical protein; 96.9 0.0015 3.4E-08 53.2 5.1 28 48-75 12-39 (172)
298 KOG2170 ATPase of the AAA+ sup 96.9 0.022 4.7E-07 49.7 12.1 44 34-77 92-136 (344)
299 COG2804 PulE Type II secretory 96.9 0.002 4.4E-08 60.1 6.4 112 36-164 246-358 (500)
300 COG1224 TIP49 DNA helicase TIP 96.9 0.0016 3.5E-08 57.8 5.4 57 22-78 33-92 (450)
301 cd03228 ABCC_MRP_Like The MRP 96.9 0.004 8.7E-08 50.8 7.5 27 50-76 27-53 (171)
302 COG0194 Gmk Guanylate kinase [ 96.9 0.0012 2.6E-08 53.4 4.2 34 50-85 3-36 (191)
303 PRK04040 adenylate kinase; Pro 96.9 0.001 2.2E-08 55.2 3.9 26 51-76 2-27 (188)
304 cd03238 ABC_UvrA The excision 96.9 0.0028 6E-08 51.9 6.4 24 50-73 20-43 (176)
305 COG3854 SpoIIIAA ncharacterize 96.9 0.0044 9.6E-08 51.8 7.5 26 53-78 139-164 (308)
306 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0045 9.8E-08 50.3 7.5 115 50-170 26-151 (166)
307 KOG3928 Mitochondrial ribosome 96.9 0.037 8.1E-07 50.4 13.6 58 175-232 402-460 (461)
308 cd00544 CobU Adenosylcobinamid 96.9 0.0052 1.1E-07 50.0 7.7 21 54-74 2-22 (169)
309 PRK06851 hypothetical protein; 96.9 0.0035 7.6E-08 57.2 7.4 38 49-86 212-250 (367)
310 COG1485 Predicted ATPase [Gene 96.9 0.0072 1.6E-07 53.9 9.0 102 49-165 63-169 (367)
311 PF03266 NTPase_1: NTPase; In 96.9 0.00093 2E-08 54.3 3.2 24 54-77 2-25 (168)
312 TIGR00235 udk uridine kinase. 96.9 0.0013 2.7E-08 55.7 4.2 28 49-76 4-31 (207)
313 TIGR02525 plasmid_TraJ plasmid 96.9 0.0036 7.8E-08 57.4 7.4 96 50-149 148-245 (372)
314 cd03246 ABCC_Protease_Secretio 96.9 0.0034 7.4E-08 51.4 6.6 27 50-76 27-53 (173)
315 COG1643 HrpA HrpA-like helicas 96.8 0.0067 1.4E-07 61.1 9.7 123 34-165 52-203 (845)
316 PRK05537 bifunctional sulfate 96.8 0.0019 4.1E-08 62.8 5.8 54 24-77 365-418 (568)
317 TIGR02012 tigrfam_recA protein 96.8 0.0022 4.8E-08 57.4 5.7 50 37-86 40-90 (321)
318 PRK00131 aroK shikimate kinase 96.8 0.0011 2.5E-08 54.1 3.6 27 50-76 3-29 (175)
319 COG0572 Udk Uridine kinase [Nu 96.8 0.0016 3.4E-08 54.5 4.4 30 49-78 6-35 (218)
320 PRK05201 hslU ATP-dependent pr 96.8 0.0015 3.3E-08 60.1 4.7 51 28-78 15-77 (443)
321 cd03281 ABC_MSH5_euk MutS5 hom 96.8 0.0014 3E-08 55.6 4.1 23 51-73 29-51 (213)
322 PRK05342 clpX ATP-dependent pr 96.8 0.0015 3.3E-08 60.8 4.7 50 27-76 70-133 (412)
323 cd00227 CPT Chloramphenicol (C 96.8 0.0012 2.6E-08 54.1 3.7 25 52-76 3-27 (175)
324 cd00071 GMPK Guanosine monopho 96.8 0.00094 2E-08 52.3 2.9 26 54-79 2-27 (137)
325 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.7E-08 54.7 3.7 26 50-75 2-27 (188)
326 KOG1051 Chaperone HSP104 and r 96.8 0.0094 2E-07 60.0 10.3 99 28-139 562-670 (898)
327 TIGR03878 thermo_KaiC_2 KaiC d 96.8 0.0023 5E-08 56.0 5.5 37 50-86 35-71 (259)
328 cd01124 KaiC KaiC is a circadi 96.8 0.0014 2.9E-08 54.4 3.9 33 54-86 2-34 (187)
329 PRK04328 hypothetical protein; 96.8 0.0026 5.6E-08 55.4 5.7 48 39-86 11-58 (249)
330 TIGR00959 ffh signal recogniti 96.8 0.0047 1E-07 57.7 7.7 27 50-76 98-124 (428)
331 PRK10416 signal recognition pa 96.8 0.0017 3.6E-08 58.5 4.6 29 50-78 113-141 (318)
332 PRK12727 flagellar biosynthesi 96.8 0.0069 1.5E-07 57.6 8.7 46 32-77 327-376 (559)
333 COG1102 Cmk Cytidylate kinase 96.8 0.0012 2.6E-08 52.0 3.0 25 53-77 2-26 (179)
334 PRK06067 flagellar accessory p 96.8 0.0026 5.7E-08 54.8 5.5 49 38-86 12-60 (234)
335 cd01120 RecA-like_NTPases RecA 96.8 0.0015 3.2E-08 52.5 3.8 33 54-86 2-34 (165)
336 cd00983 recA RecA is a bacter 96.8 0.0026 5.7E-08 57.0 5.6 49 38-86 41-90 (325)
337 cd01135 V_A-ATPase_B V/A-type 96.8 0.0059 1.3E-07 53.2 7.5 54 50-107 68-125 (276)
338 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0031 6.8E-08 54.2 5.9 48 39-86 8-55 (229)
339 PF00006 ATP-synt_ab: ATP synt 96.7 0.0027 5.9E-08 53.6 5.3 49 52-106 16-64 (215)
340 cd03222 ABC_RNaseL_inhibitor T 96.7 0.008 1.7E-07 49.3 7.9 27 50-76 24-50 (177)
341 PRK03839 putative kinase; Prov 96.7 0.0014 3.1E-08 54.0 3.5 24 53-76 2-25 (180)
342 PRK15115 response regulator Gl 96.7 0.062 1.3E-06 51.1 15.1 49 28-76 134-182 (444)
343 cd03115 SRP The signal recogni 96.7 0.015 3.2E-07 47.6 9.5 26 53-78 2-27 (173)
344 TIGR02533 type_II_gspE general 96.7 0.002 4.3E-08 61.5 4.8 99 37-148 231-330 (486)
345 COG0714 MoxR-like ATPases [Gen 96.7 0.0018 3.9E-08 58.9 4.4 47 29-79 25-71 (329)
346 PF03193 DUF258: Protein of un 96.7 0.0025 5.4E-08 51.0 4.4 37 33-74 22-58 (161)
347 PRK14737 gmk guanylate kinase; 96.7 0.0017 3.7E-08 53.7 3.7 26 50-75 3-28 (186)
348 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0013 2.7E-08 54.4 2.9 23 53-75 1-23 (183)
349 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0018 3.9E-08 56.4 4.0 25 53-77 1-25 (249)
350 KOG0651 26S proteasome regulat 96.7 0.0039 8.4E-08 54.5 5.8 29 51-79 166-194 (388)
351 PRK09354 recA recombinase A; P 96.7 0.0034 7.4E-08 56.8 5.7 50 37-86 45-95 (349)
352 PRK14738 gmk guanylate kinase; 96.7 0.0018 3.8E-08 54.7 3.7 26 49-74 11-36 (206)
353 PRK09435 membrane ATPase/prote 96.7 0.0041 8.8E-08 56.1 6.1 51 38-89 43-93 (332)
354 PRK15453 phosphoribulokinase; 96.7 0.0027 6E-08 55.3 4.8 30 49-78 3-32 (290)
355 TIGR02322 phosphon_PhnN phosph 96.7 0.0017 3.6E-08 53.5 3.4 25 52-76 2-26 (179)
356 cd02028 UMPK_like Uridine mono 96.6 0.0021 4.6E-08 52.9 4.0 25 53-77 1-25 (179)
357 TIGR02788 VirB11 P-type DNA tr 96.6 0.0025 5.4E-08 57.4 4.7 93 50-146 143-235 (308)
358 PF13086 AAA_11: AAA domain; P 96.6 0.0036 7.9E-08 53.6 5.5 36 36-75 6-41 (236)
359 TIGR00764 lon_rel lon-related 96.6 0.0027 5.8E-08 62.4 5.1 58 27-88 17-75 (608)
360 KOG0726 26S proteasome regulat 96.6 0.0043 9.4E-08 53.7 5.7 53 27-79 184-247 (440)
361 PRK05439 pantothenate kinase; 96.6 0.0029 6.3E-08 56.4 4.9 30 48-77 83-112 (311)
362 PRK14723 flhF flagellar biosyn 96.6 0.024 5.2E-07 56.5 11.6 26 51-76 185-210 (767)
363 PRK00889 adenylylsulfate kinas 96.6 0.0031 6.7E-08 51.7 4.8 29 50-78 3-31 (175)
364 PRK05973 replicative DNA helic 96.6 0.0036 7.8E-08 53.6 5.2 38 49-86 62-99 (237)
365 COG0396 sufC Cysteine desulfur 96.6 0.02 4.4E-07 48.0 9.3 25 50-74 29-53 (251)
366 COG2274 SunT ABC-type bacterio 96.6 0.0093 2E-07 59.4 8.8 26 50-75 498-523 (709)
367 TIGR01069 mutS2 MutS2 family p 96.6 0.0023 5E-08 64.5 4.6 25 50-74 321-345 (771)
368 PF03205 MobB: Molybdopterin g 96.6 0.0026 5.6E-08 50.0 4.0 27 52-78 1-27 (140)
369 TIGR02868 CydC thiol reductant 96.6 0.0051 1.1E-07 59.9 6.8 26 50-75 360-385 (529)
370 PF06309 Torsin: Torsin; Inte 96.6 0.0042 9.2E-08 47.1 4.8 47 29-75 26-77 (127)
371 PRK08533 flagellar accessory p 96.6 0.0028 6.2E-08 54.4 4.4 38 49-86 22-59 (230)
372 PF06745 KaiC: KaiC; InterPro 96.6 0.0014 2.9E-08 56.3 2.4 47 40-86 8-55 (226)
373 TIGR00382 clpX endopeptidase C 96.6 0.0032 6.9E-08 58.5 4.9 51 27-77 76-142 (413)
374 TIGR02915 PEP_resp_reg putativ 96.6 0.061 1.3E-06 51.2 13.9 48 28-75 139-186 (445)
375 PRK10436 hypothetical protein; 96.6 0.0038 8.2E-08 59.0 5.5 99 37-148 207-306 (462)
376 cd02021 GntK Gluconate kinase 96.6 0.0017 3.8E-08 51.7 2.8 23 53-75 1-23 (150)
377 PRK10751 molybdopterin-guanine 96.6 0.0041 9E-08 50.5 5.0 28 50-77 5-32 (173)
378 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.0049 1.1E-07 49.5 5.3 117 51-172 25-145 (157)
379 PRK06217 hypothetical protein; 96.5 0.002 4.4E-08 53.3 3.2 24 53-76 3-26 (183)
380 COG4619 ABC-type uncharacteriz 96.5 0.0025 5.4E-08 50.6 3.4 28 51-78 29-56 (223)
381 KOG0729 26S proteasome regulat 96.5 0.0049 1.1E-07 52.6 5.3 46 30-75 179-235 (435)
382 cd02023 UMPK Uridine monophosp 96.5 0.0019 4.1E-08 54.1 3.0 23 53-75 1-23 (198)
383 smart00072 GuKc Guanylate kina 96.5 0.0025 5.5E-08 52.7 3.7 34 51-84 2-35 (184)
384 PF08477 Miro: Miro-like prote 96.5 0.0023 5E-08 48.6 3.1 21 54-74 2-22 (119)
385 COG4608 AppF ABC-type oligopep 96.5 0.0086 1.9E-07 51.6 6.7 122 50-173 38-176 (268)
386 TIGR02655 circ_KaiC circadian 96.5 0.0048 1E-07 59.2 5.8 50 37-86 249-298 (484)
387 KOG0728 26S proteasome regulat 96.5 0.076 1.6E-06 45.2 12.0 179 23-224 141-355 (404)
388 COG2884 FtsE Predicted ATPase 96.5 0.011 2.3E-07 48.2 6.8 51 122-174 148-204 (223)
389 PRK00300 gmk guanylate kinase; 96.5 0.0026 5.6E-08 53.6 3.5 27 50-76 4-30 (205)
390 cd02024 NRK1 Nicotinamide ribo 96.5 0.0021 4.5E-08 53.1 2.8 23 53-75 1-23 (187)
391 cd02020 CMPK Cytidine monophos 96.5 0.0022 4.9E-08 50.7 3.0 23 53-75 1-23 (147)
392 PRK14527 adenylate kinase; Pro 96.5 0.0029 6.2E-08 52.7 3.7 27 49-75 4-30 (191)
393 PRK10463 hydrogenase nickel in 96.5 0.0051 1.1E-07 54.1 5.3 33 48-80 101-133 (290)
394 cd01122 GP4d_helicase GP4d_hel 96.5 0.011 2.3E-07 52.2 7.6 37 50-86 29-66 (271)
395 PRK00625 shikimate kinase; Pro 96.5 0.0027 5.9E-08 51.8 3.4 24 53-76 2-25 (173)
396 TIGR01313 therm_gnt_kin carboh 96.5 0.002 4.3E-08 52.2 2.6 22 54-75 1-22 (163)
397 CHL00081 chlI Mg-protoporyphyr 96.5 0.0031 6.6E-08 57.3 4.0 52 23-76 12-63 (350)
398 PRK07276 DNA polymerase III su 96.5 0.25 5.4E-06 43.8 15.9 66 128-194 103-172 (290)
399 PRK12597 F0F1 ATP synthase sub 96.5 0.0098 2.1E-07 56.0 7.5 85 50-138 142-246 (461)
400 PRK03846 adenylylsulfate kinas 96.5 0.0047 1E-07 51.8 4.9 30 49-78 22-51 (198)
401 TIGR02782 TrbB_P P-type conjug 96.5 0.0063 1.4E-07 54.4 6.0 89 51-147 132-222 (299)
402 cd02025 PanK Pantothenate kina 96.4 0.0022 4.8E-08 54.6 2.9 24 53-76 1-24 (220)
403 PF02367 UPF0079: Uncharacteri 96.4 0.0036 7.9E-08 47.6 3.7 27 49-75 13-39 (123)
404 PRK13947 shikimate kinase; Pro 96.4 0.0028 6E-08 51.7 3.4 24 53-76 3-26 (171)
405 KOG0736 Peroxisome assembly fa 96.4 0.054 1.2E-06 53.2 12.2 171 31-224 404-600 (953)
406 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.024 5.3E-07 48.7 9.0 26 50-75 29-54 (254)
407 PRK09280 F0F1 ATP synthase sub 96.4 0.011 2.4E-07 55.5 7.6 85 50-138 143-247 (463)
408 PRK06995 flhF flagellar biosyn 96.4 0.024 5.2E-07 53.8 9.8 26 51-76 256-281 (484)
409 PRK13407 bchI magnesium chelat 96.4 0.0031 6.7E-08 57.1 3.8 50 24-75 4-53 (334)
410 TIGR03263 guanyl_kin guanylate 96.4 0.0024 5.3E-08 52.5 3.0 24 52-75 2-25 (180)
411 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.0063 1.4E-07 52.1 5.6 48 39-86 4-51 (224)
412 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0034 7.4E-08 46.4 3.3 22 51-72 15-36 (107)
413 TIGR02236 recomb_radA DNA repa 96.4 0.013 2.8E-07 52.9 7.8 49 38-86 82-136 (310)
414 TIGR01818 ntrC nitrogen regula 96.4 0.1 2.2E-06 50.0 14.3 49 28-76 134-182 (463)
415 PRK12339 2-phosphoglycerate ki 96.4 0.0037 8E-08 52.2 3.7 25 51-75 3-27 (197)
416 COG1936 Predicted nucleotide k 96.4 0.0027 6E-08 50.6 2.7 20 53-72 2-21 (180)
417 PRK12678 transcription termina 96.4 0.0094 2E-07 56.9 6.7 87 50-139 415-513 (672)
418 TIGR00750 lao LAO/AO transport 96.4 0.0077 1.7E-07 54.0 6.0 41 38-78 21-61 (300)
419 TIGR02538 type_IV_pilB type IV 96.4 0.0051 1.1E-07 60.0 5.2 101 35-148 303-404 (564)
420 PRK14530 adenylate kinase; Pro 96.3 0.0034 7.3E-08 53.4 3.5 23 53-75 5-27 (215)
421 KOG0740 AAA+-type ATPase [Post 96.3 0.13 2.8E-06 47.7 13.8 27 50-76 185-211 (428)
422 cd01132 F1_ATPase_alpha F1 ATP 96.3 0.012 2.7E-07 51.2 6.9 52 50-107 68-121 (274)
423 COG1428 Deoxynucleoside kinase 96.3 0.0036 7.9E-08 51.7 3.4 26 51-76 4-29 (216)
424 PRK04301 radA DNA repair and r 96.3 0.013 2.8E-07 53.0 7.4 49 38-86 89-143 (317)
425 TIGR02858 spore_III_AA stage I 96.3 0.013 2.7E-07 51.5 7.0 112 50-169 110-231 (270)
426 PF13521 AAA_28: AAA domain; P 96.3 0.0033 7.3E-08 50.8 3.2 21 54-74 2-22 (163)
427 PRK08972 fliI flagellum-specif 96.3 0.009 2E-07 55.6 6.3 51 50-106 161-211 (444)
428 PF10923 DUF2791: P-loop Domai 96.3 0.052 1.1E-06 50.4 11.2 107 8-114 4-114 (416)
429 PF01078 Mg_chelatase: Magnesi 96.3 0.0055 1.2E-07 51.0 4.4 43 29-75 4-46 (206)
430 TIGR01039 atpD ATP synthase, F 96.3 0.016 3.4E-07 54.3 7.9 85 50-138 142-246 (461)
431 cd01130 VirB11-like_ATPase Typ 96.3 0.0065 1.4E-07 50.4 4.8 28 50-77 24-51 (186)
432 COG0468 RecA RecA/RadA recombi 96.3 0.012 2.5E-07 51.7 6.5 38 49-86 58-95 (279)
433 PF09848 DUF2075: Uncharacteri 96.3 0.017 3.6E-07 53.2 7.9 35 52-86 2-38 (352)
434 PRK05800 cobU adenosylcobinami 96.3 0.025 5.4E-07 46.0 8.0 23 53-75 3-25 (170)
435 COG1116 TauB ABC-type nitrate/ 96.3 0.0037 8E-08 53.1 3.2 25 50-74 28-52 (248)
436 PF07724 AAA_2: AAA domain (Cd 96.3 0.0077 1.7E-07 49.1 5.1 36 51-86 3-39 (171)
437 cd02027 APSK Adenosine 5'-phos 96.3 0.0047 1E-07 49.2 3.7 24 53-76 1-24 (149)
438 cd00464 SK Shikimate kinase (S 96.3 0.0041 8.8E-08 49.7 3.4 22 54-75 2-23 (154)
439 COG0055 AtpD F0F1-type ATP syn 96.3 0.0053 1.1E-07 55.0 4.2 54 51-108 147-201 (468)
440 COG4618 ArpD ABC-type protease 96.3 0.0097 2.1E-07 55.5 6.0 24 51-74 362-385 (580)
441 PRK13833 conjugal transfer pro 96.3 0.011 2.4E-07 53.1 6.4 87 52-148 145-234 (323)
442 PRK13949 shikimate kinase; Pro 96.2 0.0042 9E-08 50.6 3.3 24 53-76 3-26 (169)
443 PRK14529 adenylate kinase; Pro 96.2 0.017 3.6E-07 49.1 7.1 23 54-76 3-25 (223)
444 TIGR00554 panK_bact pantothena 96.2 0.0057 1.2E-07 54.2 4.4 28 49-76 60-87 (290)
445 smart00534 MUTSac ATPase domai 96.2 0.002 4.3E-08 53.4 1.4 21 53-73 1-21 (185)
446 cd03213 ABCG_EPDR ABCG transpo 96.2 0.024 5.1E-07 47.3 7.8 26 50-75 34-59 (194)
447 TIGR02768 TraA_Ti Ti-type conj 96.2 0.031 6.6E-07 56.5 9.9 28 51-78 368-395 (744)
448 KOG3347 Predicted nucleotide k 96.2 0.0042 9E-08 48.2 2.9 25 51-75 7-31 (176)
449 PLN02200 adenylate kinase fami 96.2 0.0056 1.2E-07 52.7 4.1 26 50-75 42-67 (234)
450 CHL00060 atpB ATP synthase CF1 96.2 0.015 3.3E-07 54.8 7.1 54 50-107 160-214 (494)
451 PF06414 Zeta_toxin: Zeta toxi 96.2 0.0044 9.5E-08 52.0 3.3 29 48-76 12-40 (199)
452 PRK13768 GTPase; Provisional 96.2 0.0069 1.5E-07 52.8 4.6 27 52-78 3-29 (253)
453 PRK14531 adenylate kinase; Pro 96.2 0.0049 1.1E-07 51.0 3.5 24 52-75 3-26 (183)
454 PRK10078 ribose 1,5-bisphospho 96.2 0.0042 9.1E-08 51.5 3.1 25 52-76 3-27 (186)
455 PHA02530 pseT polynucleotide k 96.2 0.0046 1E-07 55.5 3.6 25 51-75 2-26 (300)
456 PRK06761 hypothetical protein; 96.2 0.0063 1.4E-07 53.5 4.3 27 52-78 4-30 (282)
457 COG1126 GlnQ ABC-type polar am 96.2 0.0044 9.5E-08 51.4 3.0 24 50-73 27-50 (240)
458 PF03029 ATP_bind_1: Conserved 96.2 0.0048 1E-07 53.2 3.4 34 56-90 1-34 (238)
459 COG0378 HypB Ni2+-binding GTPa 96.2 0.0061 1.3E-07 49.7 3.8 34 52-85 14-47 (202)
460 PRK13975 thymidylate kinase; P 96.2 0.0053 1.2E-07 51.3 3.6 26 52-77 3-28 (196)
461 TIGR02655 circ_KaiC circadian 96.2 0.009 1.9E-07 57.3 5.6 48 39-86 9-57 (484)
462 COG0529 CysC Adenylylsulfate k 96.1 0.0089 1.9E-07 47.9 4.5 37 49-86 21-57 (197)
463 PRK11176 lipid transporter ATP 96.1 0.027 5.9E-07 55.6 9.1 25 51-75 369-393 (582)
464 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.0044 9.5E-08 52.8 3.1 24 50-73 30-53 (222)
465 TIGR03305 alt_F1F0_F1_bet alte 96.1 0.014 3E-07 54.6 6.5 85 50-138 137-241 (449)
466 COG0488 Uup ATPase components 96.1 0.028 6E-07 54.2 8.7 59 122-183 450-511 (530)
467 COG1672 Predicted ATPase (AAA+ 96.1 0.014 3E-07 53.9 6.5 57 28-86 2-58 (359)
468 COG1124 DppF ABC-type dipeptid 96.1 0.0057 1.2E-07 51.7 3.5 25 50-74 32-56 (252)
469 cd01428 ADK Adenylate kinase ( 96.1 0.0048 1E-07 51.4 3.2 22 54-75 2-23 (194)
470 PRK05057 aroK shikimate kinase 96.1 0.0056 1.2E-07 50.0 3.4 26 51-76 4-29 (172)
471 PLN02165 adenylate isopentenyl 96.1 0.0054 1.2E-07 55.0 3.5 28 49-76 41-68 (334)
472 TIGR00073 hypB hydrogenase acc 96.1 0.0081 1.8E-07 50.7 4.5 30 48-77 19-48 (207)
473 PRK13946 shikimate kinase; Pro 96.1 0.0056 1.2E-07 50.6 3.4 26 51-76 10-35 (184)
474 PRK14532 adenylate kinase; Pro 96.1 0.005 1.1E-07 51.1 3.1 22 54-75 3-24 (188)
475 PRK10646 ADP-binding protein; 96.1 0.0089 1.9E-07 47.3 4.3 43 34-76 11-53 (153)
476 PRK13948 shikimate kinase; Pro 96.1 0.0066 1.4E-07 50.0 3.7 28 49-76 8-35 (182)
477 PRK09519 recA DNA recombinatio 96.1 0.025 5.5E-07 56.5 8.4 50 37-86 45-95 (790)
478 PF13555 AAA_29: P-loop contai 96.1 0.0073 1.6E-07 39.7 3.2 24 53-76 25-48 (62)
479 COG3598 RepA RecA-family ATPas 96.1 0.022 4.7E-07 50.2 6.9 39 33-75 75-113 (402)
480 TIGR02173 cyt_kin_arch cytidyl 96.1 0.0058 1.3E-07 49.7 3.4 23 53-75 2-24 (171)
481 PRK06851 hypothetical protein; 96.1 0.0095 2.1E-07 54.4 5.0 38 49-86 28-66 (367)
482 PRK13657 cyclic beta-1,2-gluca 96.1 0.021 4.5E-07 56.5 7.8 26 50-75 360-385 (588)
483 TIGR02030 BchI-ChlI magnesium 96.0 0.0079 1.7E-07 54.5 4.4 45 29-75 5-49 (337)
484 COG2019 AdkA Archaeal adenylat 96.0 0.0077 1.7E-07 47.8 3.7 25 51-75 4-28 (189)
485 PRK08927 fliI flagellum-specif 96.0 0.023 5E-07 53.1 7.4 27 50-76 157-183 (442)
486 PRK11361 acetoacetate metaboli 96.0 0.22 4.8E-06 47.5 14.5 49 28-76 143-191 (457)
487 KOG0742 AAA+-type ATPase [Post 96.0 0.027 5.8E-07 51.2 7.4 26 51-76 384-409 (630)
488 PRK06731 flhF flagellar biosyn 96.0 0.041 8.8E-07 48.3 8.6 36 51-86 75-110 (270)
489 TIGR01618 phage_P_loop phage n 96.0 0.005 1.1E-07 52.1 2.8 23 51-73 12-34 (220)
490 TIGR00176 mobB molybdopterin-g 96.0 0.0076 1.7E-07 48.2 3.7 26 53-78 1-26 (155)
491 cd02029 PRK_like Phosphoribulo 96.0 0.0076 1.6E-07 52.2 3.9 26 53-78 1-26 (277)
492 TIGR03324 alt_F1F0_F1_al alter 96.0 0.026 5.7E-07 53.4 7.8 83 50-138 161-263 (497)
493 cd01918 HprK_C HprK/P, the bif 96.0 0.0075 1.6E-07 47.6 3.5 24 51-74 14-37 (149)
494 TIGR01967 DEAH_box_HrpA ATP-de 96.0 0.019 4.1E-07 60.5 7.4 38 35-76 70-107 (1283)
495 CHL00059 atpA ATP synthase CF1 96.0 0.02 4.4E-07 53.9 6.9 53 50-107 140-193 (485)
496 TIGR03375 type_I_sec_LssB type 96.0 0.038 8.2E-07 55.8 9.4 25 51-75 491-515 (694)
497 PRK14493 putative bifunctional 96.0 0.0088 1.9E-07 52.6 4.3 34 52-86 2-35 (274)
498 COG3640 CooC CO dehydrogenase 96.0 0.013 2.9E-07 49.2 5.1 37 53-89 2-38 (255)
499 PRK14528 adenylate kinase; Pro 96.0 0.0069 1.5E-07 50.2 3.5 24 52-75 2-25 (186)
500 PTZ00088 adenylate kinase 1; P 96.0 0.0065 1.4E-07 52.0 3.3 22 54-75 9-30 (229)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.3e-45 Score=375.89 Aligned_cols=358 Identities=39% Similarity=0.638 Sum_probs=303.9
Q ss_pred CcchHHHHHHHHHHHhhhhccCCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc
Q 037416 1 HESELTNDVVNHILKRLDEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFE 80 (362)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 80 (362)
.|+++|++|+++|+++++.. ++...+.+|||+..++++..++....++.++|+|+|++|+||||||+.+++++...|+
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~--~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLT--PSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccc--cCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 47899999999999999876 7777888999999999999988766667899999999999999999999999999998
Q ss_pred cceeeeccc--ccc---c----CC-CchHHHHHHHHHHHhcCCC-CCCchHHHHHhhCCceEEEEEeCCCCchhhhHhhc
Q 037416 81 CSCFLENVR--EES---Q----RP-GGLACLRQKLLSNLLKDKN-VIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLIG 149 (362)
Q Consensus 81 ~~~~~~~~~--~~~---~----~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~ 149 (362)
..+|+.... ... . .. .....+...++..+..... .......+.+.+.++++||||||+|+..+++.+..
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~ 316 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAG 316 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHh
Confidence 888875321 000 0 00 0122344445444433322 22334567888999999999999999999998886
Q ss_pred cCCCCCCCcEEEEEeCChHHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 150 SLDRLTPVSRIIITTRNKQVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 150 ~~~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.....++|++||||||+..+...++....++++.++.++++++|...++++..++....++..+|++.|+|+|+||+.+|
T Consensus 317 ~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlg 396 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLG 396 (1153)
T ss_pred hCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 66656789999999999988877666789999999999999999999988776766678899999999999999999999
Q ss_pred hhhcCCCHHHHHHHHHHHhccCCccHHHHHhccccCCCh-hhhhhhhhhhccCCCccHHHHHHHHHHcCCCchhhHHHHh
Q 037416 230 CFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDN-KEKNIFLDVACFFRGEHVNLVMKFLNASGFYPEIGIRVLV 308 (362)
Q Consensus 230 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~-~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~ 308 (362)
+.++..+..+|...++++.......+...++.+|+.|++ .+|.+|+++|+|+.+.+.+.+..++...+......++.|+
T Consensus 397 s~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~ 476 (1153)
T PLN03210 397 SYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLV 476 (1153)
T ss_pred HHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHH
Confidence 999999999999999999888788899999999999976 5899999999999999888888888888877888899999
Q ss_pred hccceEEccCCcEEecHHHHHHHHHHHHhhcCCCCCCcccccchhHHHHhhhC
Q 037416 309 DKSLIAIDSHKKITMLDLLQELGREIVRQESINPKNRSRLWHHEDIYEVLTYN 361 (362)
Q Consensus 309 ~~~Li~~~~~~~~~~H~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (362)
+++|++.. .+.+.||+++|++|++++.+++..|.+++|+|.+++|+.+|+.+
T Consensus 477 ~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~ 528 (1153)
T PLN03210 477 DKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDN 528 (1153)
T ss_pred hcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhC
Confidence 99999987 57899999999999999999887899999999999999999754
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-39 Score=317.35 Aligned_cols=302 Identities=27% Similarity=0.370 Sum_probs=260.3
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh---hcCcccceeeecccccccCCCchHHHHHHHHH
Q 037416 31 VGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI---SGDFECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
||.+..++.+...|... +.++++|+|+||+||||||+++.++. ..+|+..+|+. +++ .++...++..++.
T Consensus 161 VG~e~~~~kl~~~L~~d--~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED--DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccC--CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHHH
Confidence 99999999999999843 33899999999999999999999974 57899999999 777 8899999999999
Q ss_pred HHhcCCC-CCC-----chHHHHHhhCCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhh-cCCCceEE
Q 037416 108 NLLKDKN-VIP-----YIDLNFRRLSRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN-WGVSKIYE 180 (362)
Q Consensus 108 ~~~~~~~-~~~-----~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~-~~~~~~~~ 180 (362)
.+..... ... ....+.+.+..+++++|+||+|+..+|+.+...++...++++|++|||+..+... ++....++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 8776443 111 1223888999999999999999999999999888887888999999999999988 77788999
Q ss_pred cCCCCHHHHHHHHHHhhhcCC-CCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC-CCHHHHHHHHHHHhcc-------C
Q 037416 181 MQALEYHHALELFCRHAFKQN-HPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE-REKEVWESAINKLQRI-------L 251 (362)
Q Consensus 181 l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~-~~~~~~~~~~~~l~~~-------~ 251 (362)
+.-|+++||+++|.+.++... ...+..+++++++++.|+|+|+|++.+|+.++. .+..+|+.+.+.+.+. .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999999999999999987653 222347899999999999999999999999998 5667899999988664 1
Q ss_pred CccHHHHHhccccCCChhhhhhhhhhhccCCC--ccHHHHHHHHHHcCCCc------------hhhHHHHhhccceEEcc
Q 037416 252 HPSILEVLKISYDGLDNKEKNIFLDVACFFRG--EHVNLVMKFLNASGFYP------------EIGIRVLVDKSLIAIDS 317 (362)
Q Consensus 252 ~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~------------~~~l~~L~~~~Li~~~~ 317 (362)
.+.+..++..||+.|+++.|.||+|||+||++ ++.+.+..+|.++|+.. ...++.|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 36788999999999998899999999999998 67899999999998542 33799999999998764
Q ss_pred C----CcEEecHHHHHHHHHHHHhhc
Q 037416 318 H----KKITMLDLLQELGREIVRQES 339 (362)
Q Consensus 318 ~----~~~~~H~li~~~~~~~~~~~~ 339 (362)
. ..+.|||++|++|..++++.+
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhcccc
Confidence 2 459999999999999999443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.8e-37 Score=272.72 Aligned_cols=263 Identities=27% Similarity=0.433 Sum_probs=202.9
Q ss_pred ccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH--hhcCcccceeeecccccccCCCchHHHHHHHHHHHh
Q 037416 33 VESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK--ISGDFECSCFLENVREESQRPGGLACLRQKLLSNLL 110 (362)
Q Consensus 33 R~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (362)
|++++++|.+.|....++.++|+|+|++|+|||+||.+++++ ...+|+.++|+.... ......+...++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~-----~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK-----NPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc-----cccccccccccccccc
Confidence 789999999999975678999999999999999999999998 788999889987332 3444777888888777
Q ss_pred cCCCC---CC----chHHHHHhhCCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhhcCC-CceEEcC
Q 037416 111 KDKNV---IP----YIDLNFRRLSRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRNWGV-SKIYEMQ 182 (362)
Q Consensus 111 ~~~~~---~~----~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~~~~-~~~~~l~ 182 (362)
..... .. ....+.+.+.++++|+||||+|+...|+.+...+.....+++||+|||+..+...+.. ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66331 11 2334888889999999999999999998887766655678999999999877666533 6789999
Q ss_pred CCCHHHHHHHHHHhhhcCC-CCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC-CCHHHHHHHHHHHhccC------Ccc
Q 037416 183 ALEYHHALELFCRHAFKQN-HPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE-REKEVWESAINKLQRIL------HPS 254 (362)
Q Consensus 183 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~-~~~~~~~~~~~~l~~~~------~~~ 254 (362)
+|+.+++.+||...++... ......++.+++|++.|+|+|++|+.+|++++. .....|...++++.... ..+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999986554 333455678999999999999999999999954 35677888888766532 367
Q ss_pred HHHHHhccccCCChhhhhhhhhhhccCCC--ccHHHHHHHHHHcCCCc
Q 037416 255 ILEVLKISYDGLDNKEKNIFLDVACFFRG--EHVNLVMKFLNASGFYP 300 (362)
Q Consensus 255 ~~~~~~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~ 300 (362)
+..++..+|+.|+++.|.+|.+||+||.+ ++.+.+..+|.++++..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999999987 67999999998876543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.85 E-value=2.6e-19 Score=184.32 Aligned_cols=300 Identities=13% Similarity=0.122 Sum_probs=198.1
Q ss_pred hhccCCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCc
Q 037416 18 DEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGG 97 (362)
Q Consensus 18 ~~~~~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (362)
+.++.||..+..+|-|...++.|.+. ...++++|+||+|.||||++.+++.+. +.++|++ + ...+.+
T Consensus 4 ~~k~~~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l---~~~d~~ 70 (903)
T PRK04841 4 PSKLSRPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-L---DESDNQ 70 (903)
T ss_pred ccccCCCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-c---CcccCC
Confidence 34556888889999999888888652 467899999999999999999988643 2577886 2 222445
Q ss_pred hHHHHHHHHHHHhcCCCC----C---------Cch----HHHHHhhC--CceEEEEEeCCCCc--hhhh-HhhccCCCCC
Q 037416 98 LACLRQKLLSNLLKDKNV----I---------PYI----DLNFRRLS--RMKVLIVFDDVTCF--NQLE-SLIGSLDRLT 155 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~----~---------~~~----~~~~~~l~--~~~~llvlDd~~~~--~~~~-~l~~~~~~~~ 155 (362)
...++..++..+....+. . ... ..+...+. +.+++|||||++.. .... .+...+....
T Consensus 71 ~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 71 PERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 556666666555321110 0 111 11233322 68999999999533 2223 3323334345
Q ss_pred CCcEEEEEeCChHHHhh---cCCCceEEcC----CCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 156 PVSRIIITTRNKQVLRN---WGVSKIYEMQ----ALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 156 ~~~~ilitsr~~~~~~~---~~~~~~~~l~----~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
.+.++++|||....... ........+. +|+.+|+.+++....+. ...++....|++.|+|+|+++..+
T Consensus 151 ~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~ 225 (903)
T PRK04841 151 ENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLI 225 (903)
T ss_pred CCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHH
Confidence 67789899997421111 1112234455 99999999999866522 123567899999999999999998
Q ss_pred hhhhcCCCHHHHHHHHHHHhccCCccHHHHHhc-cccCCChhhhhhhhhhhccCCCccHHHHHHHHHHcCCCchhhHHHH
Q 037416 229 GCFLYEREKEVWESAINKLQRILHPSILEVLKI-SYDGLDNKEKNIFLDVACFFRGEHVNLVMKFLNASGFYPEIGIRVL 307 (362)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L 307 (362)
+..+...... .......+.......+...+.. .+..||++.+.++..+|+++ .++.+.+..+.+. .+....+..|
T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l 301 (903)
T PRK04841 226 ALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEEL 301 (903)
T ss_pred HHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHH
Confidence 8877543210 1111112211123346555444 48999999999999999986 7888877777653 2456789999
Q ss_pred hhccceEE--cc-CCcEEecHHHHHHHHHHHHhhc
Q 037416 308 VDKSLIAI--DS-HKKITMLDLLQELGREIVRQES 339 (362)
Q Consensus 308 ~~~~Li~~--~~-~~~~~~H~li~~~~~~~~~~~~ 339 (362)
.+.+|+.. +. ..+|++|++++++++..+....
T Consensus 302 ~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 302 ERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred HHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 99999653 22 3479999999999999985443
No 5
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.79 E-value=1.2e-18 Score=174.17 Aligned_cols=321 Identities=16% Similarity=0.170 Sum_probs=202.6
Q ss_pred CcccccchHHHHHHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCc---hHHHHHH
Q 037416 29 QLVGVESTVDEIESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGG---LACLRQK 104 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 104 (362)
.++||+.+++.|.+.+.. ..+...++.|.|.+|||||++++++.....+...+.+--. +..... ... +....+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~-f~q~~~-~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGK-FDQFER-NIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhh-cccccC-CCchHHHHHHHHH
Confidence 379999999999998886 3455779999999999999999999998765522222111 111110 112 2222233
Q ss_pred HHHHHhcCCCCC--------------------Cch-------------------------H-----HHHHhh-CCceEEE
Q 037416 105 LLSNLLKDKNVI--------------------PYI-------------------------D-----LNFRRL-SRMKVLI 133 (362)
Q Consensus 105 l~~~~~~~~~~~--------------------~~~-------------------------~-----~~~~~l-~~~~~ll 133 (362)
+..++..+.+.. +.+ . .+.... +.+|.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 333222211100 000 0 012222 3469999
Q ss_pred EEeCC-CCchh-hh---HhhccCC--C-CCCCcEEEEEeCCh--HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCC
Q 037416 134 VFDDV-TCFNQ-LE---SLIGSLD--R-LTPVSRIIITTRNK--QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHP 203 (362)
Q Consensus 134 vlDd~-~~~~~-~~---~l~~~~~--~-~~~~~~ilitsr~~--~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~ 203 (362)
|+||+ |.... ++ .++.... . .......+.+.+.. .+.........+.|.||+..+...++...+......
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 99999 64433 32 2222221 0 00111222222222 223333455789999999999999999888543322
Q ss_pred CCChHHHHHHHHHHcCCCchHHHHHhhhhcCC-------CHHHHHHHHHHHhcc-CCccHHHHHhccccCCChhhhhhhh
Q 037416 204 DVGYEELSSKAMNYAQGVPLALNVLGCFLYER-------EKEVWESAINKLQRI-LHPSILEVLKISYDGLDNKEKNIFL 275 (362)
Q Consensus 204 ~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~-------~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~L~~~~~~~l~ 275 (362)
. .+..+.|++++.|||+++.++.+.+.+. ....|+....++... ..+.+-..+...+++||...++++.
T Consensus 239 ~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 P---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred c---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2 4679999999999999999999999874 345565555554332 1233555788999999999999999
Q ss_pred hhhccCCCccHHHHHHHHHHcCCCchhhHHHHhhccceEEcc--------CC---cEEecHHHHHHHHHHHHhhcCCCCC
Q 037416 276 DVACFFRGEHVNLVMKFLNASGFYPEIGIRVLVDKSLIAIDS--------HK---KITMLDLLQELGREIVRQESINPKN 344 (362)
Q Consensus 276 ~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Li~~~~--------~~---~~~~H~li~~~~~~~~~~~~~~~~~ 344 (362)
..||+++.|+.+.|..++..........+-.....+++.+.+ .. +-+.|++||++|+..+.+.
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~------ 389 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES------ 389 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh------
Confidence 999999999999999998754333333444444555555421 11 2267999999998887643
Q ss_pred CcccccchhHHHHhhhC
Q 037416 345 RSRLWHHEDIYEVLTYN 361 (362)
Q Consensus 345 ~~~~~~~~~~~~~l~~~ 361 (362)
+|-..|..|..+|+++
T Consensus 390 -~rq~~H~~i~~lL~~~ 405 (849)
T COG3899 390 -QRQYLHLRIGQLLEQN 405 (849)
T ss_pred -hHHHHHHHHHHHHHHh
Confidence 3446688888888653
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.76 E-value=3.7e-17 Score=155.99 Aligned_cols=303 Identities=13% Similarity=0.089 Sum_probs=204.0
Q ss_pred hhhccCCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 17 LDEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 17 ~~~~~~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
++..+.+|..+.+.|-|...++.|... ...+.++|..|+|.||||++.+++... ..-..+.|+. .+..+.
T Consensus 8 ~~sk~~~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wls----lde~dn 77 (894)
T COG2909 8 IPSKLVRPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLS----LDESDN 77 (894)
T ss_pred CccccCCCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEee----cCCccC
Confidence 345567888899999999999988874 478999999999999999999999843 4446788887 333366
Q ss_pred chHHHHHHHHHHHhcCCCCCC-------------c----hHHHHHhhC--CceEEEEEeCCC--CchhhhHh-hccCCCC
Q 037416 97 GLACLRQKLLSNLLKDKNVIP-------------Y----IDLNFRRLS--RMKVLIVFDDVT--CFNQLESL-IGSLDRL 154 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~-------------~----~~~~~~~l~--~~~~llvlDd~~--~~~~~~~l-~~~~~~~ 154 (362)
+...|.+.++..+....+... . ++.+..-+. .+|+.+||||++ ....+..- ...+...
T Consensus 78 dp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~ 157 (894)
T COG2909 78 DPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA 157 (894)
T ss_pred CHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC
Confidence 777888888776654333111 1 111233222 368999999995 33333333 3334555
Q ss_pred CCCcEEEEEeCChHHHhhcC---CCceEE----cCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 155 TPVSRIIITTRNKQVLRNWG---VSKIYE----MQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 155 ~~~~~ilitsr~~~~~~~~~---~~~~~~----l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
+++..+++|||...-..... ....++ .-.|+.+|+.++|..... . +.....++.+++.++|-+.++..
T Consensus 158 P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l----~Ld~~~~~~L~~~teGW~~al~L 232 (894)
T COG2909 158 PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-L----PLDAADLKALYDRTEGWAAALQL 232 (894)
T ss_pred CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-C----CCChHHHHHHHhhcccHHHHHHH
Confidence 78889999999762222110 011122 235899999999987751 1 23346699999999999999999
Q ss_pred HhhhhcC-CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccCCCccHHHHHHHHHHcCCCchhhHHH
Q 037416 228 LGCFLYE-REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFRGEHVNLVMKFLNASGFYPEIGIRV 306 (362)
Q Consensus 228 ~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 306 (362)
.+-.+++ .+.......++...+.+ ..-+.+..++.||++.+.++..+|++ ..|.-+....+.+.. +....+++
T Consensus 233 ~aLa~~~~~~~~q~~~~LsG~~~~l---~dYL~eeVld~Lp~~l~~FLl~~svl-~~f~~eL~~~Ltg~~--ng~amLe~ 306 (894)
T COG2909 233 IALALRNNTSAEQSLRGLSGAASHL---SDYLVEEVLDRLPPELRDFLLQTSVL-SRFNDELCNALTGEE--NGQAMLEE 306 (894)
T ss_pred HHHHccCCCcHHHHhhhccchHHHH---HHHHHHHHHhcCCHHHHHHHHHHHhH-HHhhHHHHHHHhcCC--cHHHHHHH
Confidence 9888884 33322222111110111 12234455899999999999999998 345555555555432 44556999
Q ss_pred HhhccceE---EccCCcEEecHHHHHHHHHHHHhhcC
Q 037416 307 LVDKSLIA---IDSHKKITMLDLLQELGREIVRQESI 340 (362)
Q Consensus 307 L~~~~Li~---~~~~~~~~~H~li~~~~~~~~~~~~~ 340 (362)
|.++||+- .+.+.+|+.|+++.+|.+........
T Consensus 307 L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~ 343 (894)
T COG2909 307 LERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELA 343 (894)
T ss_pred HHhCCCceeeecCCCceeehhHHHHHHHHhhhccccC
Confidence 99999876 34477899999999999999887553
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.66 E-value=2.2e-14 Score=133.87 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=168.2
Q ss_pred cCCCCCCCCcccccchHHHHHHHhccC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc--ccceeeecccccccCCC
Q 037416 21 FQPRDNKNQLVGVESTVDEIESLLGVE--SKGVYALGIWGISGIGKTAIARAIFHKISGDF--ECSCFLENVREESQRPG 96 (362)
Q Consensus 21 ~~~~~~~~~~vGR~~el~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 96 (362)
+.+-..|+.|+||++|+++|...+... +...+.++|+|++|+|||++++.+++.+.... -..+++. +.. ..
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~----~~ 97 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQI----DR 97 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCc----CC
Confidence 356667889999999999999988542 33456789999999999999999999876543 2233333 221 23
Q ss_pred chHHHHHHHHHHHhcC-CC-CCCc----hHHHHHhhC--CceEEEEEeCCCCch------hhhHhhccCCCCC-CCcEEE
Q 037416 97 GLACLRQKLLSNLLKD-KN-VIPY----IDLNFRRLS--RMKVLIVFDDVTCFN------QLESLIGSLDRLT-PVSRII 161 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~-~~-~~~~----~~~~~~~l~--~~~~llvlDd~~~~~------~~~~l~~~~~~~~-~~~~il 161 (362)
+...++..++..+... .+ .... ...+...+. +++++|+||+++... .+..+........ .+..+|
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI 177 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVI 177 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEE
Confidence 4456666776666542 11 1111 223444443 467899999996532 2334333222211 133356
Q ss_pred EEeCChHHHhhc-------CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHc----CCCchHHHHHhh
Q 037416 162 ITTRNKQVLRNW-------GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYA----QGVPLALNVLGC 230 (362)
Q Consensus 162 itsr~~~~~~~~-------~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~----~G~Pl~i~~~~~ 230 (362)
.++......... .....+.+++++.++..+++..++.....+....++.++.+++.+ |..+.++..+-.
T Consensus 178 ~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 178 GISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred EEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 666544322211 113468899999999999999887433222233455666676666 335555554433
Q ss_pred hh---c-C----CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccC----CCccHHHHHHH----HH
Q 037416 231 FL---Y-E----REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF----RGEHVNLVMKF----LN 294 (362)
Q Consensus 231 ~l---~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~~----~~ 294 (362)
++ . + -+...+....+... ...+...+..||..++.+|..++... ..++...+... ..
T Consensus 258 a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~ 330 (394)
T PRK00411 258 AGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCE 330 (394)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 21 1 1 13445554444431 23345568899999999888776443 33555444432 11
Q ss_pred HcCC------CchhhHHHHhhccceEEc
Q 037416 295 ASGF------YPEIGIRVLVDKSLIAID 316 (362)
Q Consensus 295 ~~~~------~~~~~l~~L~~~~Li~~~ 316 (362)
.-+. .....++.|...|||...
T Consensus 331 ~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 331 ELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 1111 123479999999999853
No 8
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.62 E-value=3.7e-15 Score=128.79 Aligned_cols=193 Identities=19% Similarity=0.250 Sum_probs=104.2
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHH------HH
Q 037416 30 LVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACL------RQ 103 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 103 (362)
|+||++|+++|.+++.. +..+.++|+|+.|+|||+|++.+.+.........+|+........ .....+ ..
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHH
Confidence 79999999999999873 346789999999999999999999998554445555543222111 111111 01
Q ss_pred HHHHHHhcCCC--------------CCCchHHHHHhhC--CceEEEEEeCCCCch-------h----hhHhhccCCCCCC
Q 037416 104 KLLSNLLKDKN--------------VIPYIDLNFRRLS--RMKVLIVFDDVTCFN-------Q----LESLIGSLDRLTP 156 (362)
Q Consensus 104 ~l~~~~~~~~~--------------~~~~~~~~~~~l~--~~~~llvlDd~~~~~-------~----~~~l~~~~~~~~~ 156 (362)
.+........+ ....+..+...+. +++++||+||++... . +..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 11111111111 1122333433333 234999999995443 1 1222222222 33
Q ss_pred CcEEEEEeCChHHHhh--------cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 157 VSRIIITTRNKQVLRN--------WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 157 ~~~ilitsr~~~~~~~--------~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
+..++++.....+... ......+.+++|+.+++.+++...+... ..-...+...+.+++.+||+|..|..+
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 4445566555544433 1233459999999999999999876444 111235677899999999999998753
No 9
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=2.1e-14 Score=130.22 Aligned_cols=263 Identities=15% Similarity=0.166 Sum_probs=161.6
Q ss_pred CCCCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.|+||+..++.+..++.. .+...+.++|+||+|+|||+||+.+++.+...+. +.. ... ......
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~----~~~~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA----LEKPGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc----ccChHH
Confidence 44667799999999999887763 2334567899999999999999999998753321 111 100 000011
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch--hhhHhhccCC-------------------CCCCCcE
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN--QLESLIGSLD-------------------RLTPVSR 159 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~-------------------~~~~~~~ 159 (362)
+ ..++ ..+ ....++++|+++... ..+.+...+. ...+.+-
T Consensus 93 l-~~~l-----------------~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 93 L-AAIL-----------------TNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred H-HHHH-----------------Hhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 1 1111 111 234578888885332 1121211110 0112233
Q ss_pred EEEEeCChHHHhhc--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCH
Q 037416 160 IIITTRNKQVLRNW--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYEREK 237 (362)
Q Consensus 160 ilitsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~ 237 (362)
|..|++...+...+ .....+.+++++.++..+++...+.... ....++.++.|++.|+|.|..+..+...+..
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~--- 228 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD--- 228 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH---
Confidence 44555543222221 1235688999999999999998775432 2245678999999999999877766664321
Q ss_pred HHHHHHHH--HHhccCCccHHHHHhccccCCChhhhhhhh-hhhccCC-CccHHHHHHHHHHcCCCchhhHH-HHhhccc
Q 037416 238 EVWESAIN--KLQRILHPSILEVLKISYDGLDNKEKNIFL-DVACFFR-GEHVNLVMKFLNASGFYPEIGIR-VLVDKSL 312 (362)
Q Consensus 238 ~~~~~~~~--~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~L 312 (362)
|..... .............+...+..|++..+..|. ++..|.. .+..+.+...++.+....+..++ .|++.+|
T Consensus 229 --~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~l 306 (328)
T PRK00080 229 --FAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGF 306 (328)
T ss_pred --HHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCC
Confidence 111000 000000122234456677888888888886 6666654 48999999999888777888899 9999999
Q ss_pred eEEccCCc
Q 037416 313 IAIDSHKK 320 (362)
Q Consensus 313 i~~~~~~~ 320 (362)
+.....|+
T Consensus 307 i~~~~~gr 314 (328)
T PRK00080 307 IQRTPRGR 314 (328)
T ss_pred cccCCchH
Confidence 98665554
No 10
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=6.5e-14 Score=126.12 Aligned_cols=259 Identities=18% Similarity=0.204 Sum_probs=156.0
Q ss_pred CCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 28 NQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
+.|+|++.++++|..++.. .....+.++++||+|+|||+||+.+++.+...+. ...... ......+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~----~~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPA----LEKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccch----hcCchhHHH-
Confidence 4599999999999988864 1233556899999999999999999998754321 110000 001111111
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCC-------------------CCCCCcEEEEE
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLD-------------------RLTPVSRIIIT 163 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~-------------------~~~~~~~ilit 163 (362)
.+.. + +.+.++++|+++.. ...+.+...+. ...+.+-+.+|
T Consensus 75 ~l~~-----------------~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILTN-----------------L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHh-----------------c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 1111 1 23457788887522 22222221111 01123334445
Q ss_pred eCChHHHhhc--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCHHHHH
Q 037416 164 TRNKQVLRNW--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYEREKEVWE 241 (362)
Q Consensus 164 sr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~ 241 (362)
++...+.... .....+.+++++.++..+++...+.... ....++.++.|++.|+|.|..+..++..+..
T Consensus 137 ~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~------- 207 (305)
T TIGR00635 137 TRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRD------- 207 (305)
T ss_pred CCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHH-------
Confidence 5543222221 1234678999999999999998775322 2345678899999999999887666654311
Q ss_pred HHHHHHhccCC----ccHHHHHhccccCCChhhhhhhh-hhhccCC-CccHHHHHHHHHHcCCCchhhHH-HHhhccceE
Q 037416 242 SAINKLQRILH----PSILEVLKISYDGLDNKEKNIFL-DVACFFR-GEHVNLVMKFLNASGFYPEIGIR-VLVDKSLIA 314 (362)
Q Consensus 242 ~~~~~l~~~~~----~~~~~~~~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Li~ 314 (362)
.....-..... ......+...+..++...+..|. ++..+.. +++.+.+...++.+.......++ .|++++||.
T Consensus 208 ~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~ 287 (305)
T TIGR00635 208 FAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQ 287 (305)
T ss_pred HHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcc
Confidence 00000000000 11122255667888888888777 5455543 48889999998888788888899 699999998
Q ss_pred EccCCcEE
Q 037416 315 IDSHKKIT 322 (362)
Q Consensus 315 ~~~~~~~~ 322 (362)
....|++.
T Consensus 288 ~~~~g~~~ 295 (305)
T TIGR00635 288 RTPRGRIA 295 (305)
T ss_pred cCCchhhh
Confidence 66666543
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=7.4e-13 Score=122.40 Aligned_cols=284 Identities=15% Similarity=0.142 Sum_probs=161.5
Q ss_pred CCCCCCCCcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc------cceeeeccccccc
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGDFE------CSCFLENVREESQ 93 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~ 93 (362)
.+-..|+.|+||+.|+++|..++.. .+...+.+.|+|++|+|||++++.+++.+..... ..+|+.+. .
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~-~--- 84 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ-I--- 84 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC-C---
Confidence 4556667899999999999999874 2334567999999999999999999998753221 23333322 1
Q ss_pred CCCchHHHHHHHHHHHhc---CCCC--CC---chHHHHHhh--CCceEEEEEeCCCCch-----hhhHhhcc--CCCCC-
Q 037416 94 RPGGLACLRQKLLSNLLK---DKNV--IP---YIDLNFRRL--SRMKVLIVFDDVTCFN-----QLESLIGS--LDRLT- 155 (362)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~---~~~~--~~---~~~~~~~~l--~~~~~llvlDd~~~~~-----~~~~l~~~--~~~~~- 155 (362)
..+...++..+...+.. ..+. .+ ....+...+ .+++++||||+++... .+..+... .....
T Consensus 85 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~ 163 (365)
T TIGR02928 85 -LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDN 163 (365)
T ss_pred -CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCC
Confidence 23345666666666532 1111 11 123344444 3567899999997551 12222222 11111
Q ss_pred CCcEEEEEeCChHHHhhc-----C--CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHH---HHHHHHHHcCCCchHH
Q 037416 156 PVSRIIITTRNKQVLRNW-----G--VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEE---LSSKAMNYAQGVPLAL 225 (362)
Q Consensus 156 ~~~~ilitsr~~~~~~~~-----~--~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~---~~~~i~~~~~G~Pl~i 225 (362)
....+|+++........+ . ....+.+++++.+|..+++..++.....+....++ ....++..+.|.|..+
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 334555566544332211 1 12468899999999999999887422112112233 3445666677998665
Q ss_pred HHHhhhh-----cC----CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccC----CCccHHHHHHH
Q 037416 226 NVLGCFL-----YE----REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF----RGEHVNLVMKF 292 (362)
Q Consensus 226 ~~~~~~l-----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~~ 292 (362)
..++... .+ -+...+....+.+. ...+...+..||.+++.+|..++.+. ..+....+..-
T Consensus 244 l~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~ 316 (365)
T TIGR02928 244 IDLLRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 4333221 11 23444444444331 23344567889998888887766432 22444433331
Q ss_pred ----HHHcCC------CchhhHHHHhhccceEEcc
Q 037416 293 ----LNASGF------YPEIGIRVLVDKSLIAIDS 317 (362)
Q Consensus 293 ----~~~~~~------~~~~~l~~L~~~~Li~~~~ 317 (362)
...-+. .....++.|...|||....
T Consensus 317 y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 317 YKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 111111 1233789999999999643
No 12
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.47 E-value=1.8e-11 Score=108.19 Aligned_cols=177 Identities=15% Similarity=0.118 Sum_probs=109.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCch---HHHH--
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYI---DLNF-- 123 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~-- 123 (362)
.+.+.++|+|++|+||||+++.++..+...-...+++.+. ..+..++...+...+.......... ..+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADFGLETEGRDKAALLRELEDF 114 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999876321122222211 2344566666666654433222111 1122
Q ss_pred --H-hhCCceEEEEEeCCCCch--hhhHhhccCC---CCCCCcEEEEEeCChHHHhhc----------CCCceEEcCCCC
Q 037416 124 --R-RLSRMKVLIVFDDVTCFN--QLESLIGSLD---RLTPVSRIIITTRNKQVLRNW----------GVSKIYEMQALE 185 (362)
Q Consensus 124 --~-~l~~~~~llvlDd~~~~~--~~~~l~~~~~---~~~~~~~ilitsr~~~~~~~~----------~~~~~~~l~~l~ 185 (362)
. ...+++.++|+||++... .++.+..... .......+++|.... ....+ .....+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 2 235678899999997543 3444432211 112233455555433 21111 113467899999
Q ss_pred HHHHHHHHHHhhhcCCC--CCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 186 YHHALELFCRHAFKQNH--PDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 186 ~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
.+|..+++..++...+. .....++..+.|++.|+|+|..|+.++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999987754331 223567899999999999999999998876
No 13
>PF05729 NACHT: NACHT domain
Probab=99.36 E-value=9.2e-12 Score=101.55 Aligned_cols=144 Identities=21% Similarity=0.265 Sum_probs=85.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcc-----cceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFE-----CSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRL 126 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 126 (362)
|+++|+|++|+|||+++..++.++..... ..+++...+.... ......+...+............. .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPESIAPIEE-LLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccchhhhHH-HHHHHHH
Confidence 47899999999999999999998754431 2233332333222 111123443333333222211111 1112223
Q ss_pred CCceEEEEEeCCCCchh---------hhHhh-ccCCC-CCCCcEEEEEeCChHH---HhhcCCCceEEcCCCCHHHHHHH
Q 037416 127 SRMKVLIVFDDVTCFNQ---------LESLI-GSLDR-LTPVSRIIITTRNKQV---LRNWGVSKIYEMQALEYHHALEL 192 (362)
Q Consensus 127 ~~~~~llvlDd~~~~~~---------~~~l~-~~~~~-~~~~~~ilitsr~~~~---~~~~~~~~~~~l~~l~~~e~~~l 192 (362)
...++++|+|++++... +..++ ..+.. ..+++++++|+|.... .........+.+.+|+.++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56789999999964332 22222 22222 3568899999998755 33334446899999999999999
Q ss_pred HHHhh
Q 037416 193 FCRHA 197 (362)
Q Consensus 193 l~~~~ 197 (362)
+.+.+
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 98776
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=1.1e-10 Score=100.28 Aligned_cols=155 Identities=14% Similarity=0.210 Sum_probs=96.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
..+.+.|+|++|+|||+|+..+++.+......+.|+.... .......+ ...+ .+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~~~~~~~~-----------------~~~~-~~ 91 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------SQYFSPAV-----------------LENL-EQ 91 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------hhhhhHHH-----------------Hhhc-cc
Confidence 3567899999999999999999998765544555655210 00011111 1111 12
Q ss_pred eEEEEEeCCCCc---hhhh-HhhccCCCC-CCCcEE-EEEeCC---------hHHHhhcCCCceEEcCCCCHHHHHHHHH
Q 037416 130 KVLIVFDDVTCF---NQLE-SLIGSLDRL-TPVSRI-IITTRN---------KQVLRNWGVSKIYEMQALEYHHALELFC 194 (362)
Q Consensus 130 ~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~i-litsr~---------~~~~~~~~~~~~~~l~~l~~~e~~~ll~ 194 (362)
.-++++||++.. ..|+ .+...++.. ..+..+ ++|+.. +++.+.+.....+++++++.++..+++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 348999999742 2333 222323222 223445 445543 2444445556789999999999999999
Q ss_pred HhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 195 RHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
+.+...+ ....++..+.|++.+.|..-.+..+...+
T Consensus 172 ~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8875443 22346889999999999888776555544
No 15
>PF14516 AAA_35: AAA-like domain
Probab=99.26 E-value=1.8e-09 Score=97.76 Aligned_cols=203 Identities=11% Similarity=0.125 Sum_probs=121.0
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccccc-CCCchHHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQ-RPGGLACL 101 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 101 (362)
.|..+..+|+|...-+++.+.+. .....+.|.||..+|||+|+..+.+++...--.++++. +..... ...+...+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~---~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIV---QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHh---cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 56667778899977777777775 23557899999999999999999999875533344444 333222 13345555
Q ss_pred HHHHHHHHhcCCCCCC--------------chHH-HHHh-h--CCceEEEEEeCCCCchh----hhHhhccC----CCC-
Q 037416 102 RQKLLSNLLKDKNVIP--------------YIDL-NFRR-L--SRMKVLIVFDDVTCFNQ----LESLIGSL----DRL- 154 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~--------------~~~~-~~~~-l--~~~~~llvlDd~~~~~~----~~~l~~~~----~~~- 154 (362)
++.++..+........ .... +.+. + .+++++|+||+++.... ...|...+ ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555444433332111 1111 2222 1 25899999999963321 12222211 111
Q ss_pred ----CCCcEEEEEeCCh-HHHhh-----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 155 ----TPVSRIIITTRNK-QVLRN-----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 155 ----~~~~~ilitsr~~-~~~~~-----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
-...++++....+ ..... ..-...+.|++|+.+|...|+...-.. ..+...+.|+..++|+|+.
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHH
Confidence 1122233322211 11111 112347889999999999998765311 2234499999999999999
Q ss_pred HHHHhhhhcCC
Q 037416 225 LNVLGCFLYER 235 (362)
Q Consensus 225 i~~~~~~l~~~ 235 (362)
++.++..+.+.
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999999663
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.3e-10 Score=103.11 Aligned_cols=175 Identities=21% Similarity=0.294 Sum_probs=108.0
Q ss_pred CCCCCCcccccchH---HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTV---DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el---~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.+||.+..+ .-|..++. .+....+++|||+|+||||||+.++......|.. .+....+..+
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~---------~sAv~~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA---------LSAVTSGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEE---------eccccccHHH
Confidence 34444556655444 22444444 4567778999999999999999999976655432 1221333444
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEE--EeCChHHH---hhc
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIII--TTRNKQVL---RNW 173 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ili--tsr~~~~~---~~~ 173 (362)
+...+-.. -.....++++++++|+++ +..+-+.|++.+. .+.-++| ||.++.+. ...
T Consensus 89 lr~i~e~a-------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 89 LREIIEEA-------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHHHHHHH-------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHh
Confidence 43333111 011234789999999995 6666677776654 4444444 55554221 112
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhhcCC-----CCCCChHHHHHHHHHHcCCCchHH
Q 037416 174 GVSKIYEMQALEYHHALELFCRHAFKQN-----HPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 174 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
+...++.+++|+.++..+++.+-+.... ......++..+.++..++|-....
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 4557899999999999999987332211 111234678888999999877653
No 17
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.1e-09 Score=95.40 Aligned_cols=284 Identities=14% Similarity=0.106 Sum_probs=159.9
Q ss_pred CCCCCCCCcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCccc--ceeeecccccccCCCc
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGDFEC--SCFLENVREESQRPGG 97 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 97 (362)
.+...|+.+.+|+.+++++...|.. .++.+.-++|+|++|+|||+.++.+++++...... .++++ +.. ..+
T Consensus 11 ~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~----~~t 85 (366)
T COG1474 11 LEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE----LRT 85 (366)
T ss_pred CCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee----CCC
Confidence 4566677799999999999988875 23344559999999999999999999998765333 35554 333 455
Q ss_pred hHHHHHHHHHHHhcCCC-CC---CchHHHHHhhC--CceEEEEEeCCCCchh-----hhHhhccCCCCCCCcEEEEEeCC
Q 037416 98 LACLRQKLLSNLLKDKN-VI---PYIDLNFRRLS--RMKVLIVFDDVTCFNQ-----LESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~-~~---~~~~~~~~~l~--~~~~llvlDd~~~~~~-----~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
...+...++..+..... .. +....+.+.+. ++.+++|||+++.... +-.+.........+.-++.++.+
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc
Confidence 56666667666542222 12 22333555554 4789999999963322 22333222222222234444444
Q ss_pred hHHHhhcC-------CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChH---HHHHHHHHHcCCCc-hHHHHHhhhh--c
Q 037416 167 KQVLRNWG-------VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYE---ELSSKAMNYAQGVP-LALNVLGCFL--Y 233 (362)
Q Consensus 167 ~~~~~~~~-------~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~---~~~~~i~~~~~G~P-l~i~~~~~~l--~ 233 (362)
..+...+. ....+.++|.+.+|..+.+..++-....+....+ +....++...+|-. .||..+-.+. +
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 43322211 2234889999999999999998754333332222 33333344444433 3333222211 1
Q ss_pred C------CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccCCCccHHH----HHHHHHHcCC---Cc
Q 037416 234 E------REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFRGEHVNL----VMKFLNASGF---YP 300 (362)
Q Consensus 234 ~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~~~~~~~----l~~~~~~~~~---~~ 300 (362)
+ .+........... -.......+..|+.+++.++..++....+++... ...+....+. ..
T Consensus 246 e~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~ 318 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRF 318 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHH
Confidence 1 1122222221111 1122333477888888887776665534444433 3333333344 23
Q ss_pred hhhHHHHhhccceEEcc
Q 037416 301 EIGIRVLVDKSLIAIDS 317 (362)
Q Consensus 301 ~~~l~~L~~~~Li~~~~ 317 (362)
...++.|...|+|....
T Consensus 319 ~~ii~~L~~lgiv~~~~ 335 (366)
T COG1474 319 SDIISELEGLGIVSASL 335 (366)
T ss_pred HHHHHHHHhcCeEEeee
Confidence 34688999999998543
No 18
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.21 E-value=5e-10 Score=96.34 Aligned_cols=176 Identities=17% Similarity=0.209 Sum_probs=105.9
Q ss_pred CCCccc--ccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 27 KNQLVG--VESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 27 ~~~~vG--R~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
-+.|++ .+..++.+.+++. ....+.+.|+|++|+|||+||+.++++........+++.+.. ... .. ..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~-~~~---~~----~~ 83 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE-LAQ---AD----PE 83 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH-HHH---hH----HH
Confidence 445663 3446777777754 345678999999999999999999998764433444444111 110 00 01
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch---h-hhHhhccCCCC-CCCcEEEEEeCChH---------HH
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN---Q-LESLIGSLDRL-TPVSRIIITTRNKQ---------VL 170 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~~-~~~~~ilitsr~~~---------~~ 170 (362)
+ ...+.+ .-+++|||++... . .+.+...+... ..+..+|+|++... +.
T Consensus 84 ~-----------------~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 84 V-----------------LEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred H-----------------Hhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 1 111122 2389999996332 1 22333222211 22346888877431 12
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
..+.....+++++++.++...++........ ....++.++.|.+.++|||..+..+...+
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2222245789999999999999987653222 22446778999999999999887665543
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.19 E-value=1.3e-09 Score=106.14 Aligned_cols=283 Identities=14% Similarity=0.075 Sum_probs=148.5
Q ss_pred hhccCCCCCCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-----cc--cceeeec
Q 037416 18 DEVFQPRDNKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGD-----FE--CSCFLEN 87 (362)
Q Consensus 18 ~~~~~~~~~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~--~~~~~~~ 87 (362)
...+.+-..|+.+.||++|+++|..+|.. +.....++.|+|++|+|||++++.+++.+... .. ..+++.+
T Consensus 745 ~rvL~~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 745 IRMMQLDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred HHHcCcccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 33445666778999999999999998875 22334567899999999999999999887432 11 2234432
Q ss_pred ccccccCCCchHHHHHHHHHHHhcCCC--CCCc---hHHHHHhhC---CceEEEEEeCCCCch--h---hhHhhccCCCC
Q 037416 88 VREESQRPGGLACLRQKLLSNLLKDKN--VIPY---IDLNFRRLS---RMKVLIVFDDVTCFN--Q---LESLIGSLDRL 154 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~---~~~~~~~l~---~~~~llvlDd~~~~~--~---~~~l~~~~~~~ 154 (362)
.. ......++..+..++....+ .... +..++..+. ....+||||+++... . +-.+.....
T Consensus 825 m~-----Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-- 897 (1164)
T PTZ00112 825 MN-----VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-- 897 (1164)
T ss_pred Cc-----cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--
Confidence 21 23344555555555533322 1122 223443332 234699999996332 1 222222211
Q ss_pred CCCcEEE--EEeCChHHH----hhcC---CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHH---H-cCCC
Q 037416 155 TPVSRII--ITTRNKQVL----RNWG---VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMN---Y-AQGV 221 (362)
Q Consensus 155 ~~~~~il--itsr~~~~~----~~~~---~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~---~-~~G~ 221 (362)
..+++++ .++...++. +.+. ....+.++|++.++..+++..++... .....++.++.++. . .|-.
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGDA 975 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDI 975 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCHH
Confidence 1233433 344322111 1111 12246789999999999999988532 12233444555544 3 3334
Q ss_pred chHHHHHhhhhcC--C---CHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhcc-CC----CccHHHHHH
Q 037416 222 PLALNVLGCFLYE--R---EKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACF-FR----GEHVNLVMK 291 (362)
Q Consensus 222 Pl~i~~~~~~l~~--~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~-~~----~~~~~~l~~ 291 (362)
=.||..+-.+... . .......+.+++. ...+...+..||.+.+.+|..+... .. .++...+..
T Consensus 976 RKALDILRrAgEikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYe 1048 (1164)
T PTZ00112 976 RKALQICRKAFENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLN 1048 (1164)
T ss_pred HHHHHHHHHHHhhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHH
Confidence 4455444333321 1 2233333333321 1223445677888888777644432 11 243322222
Q ss_pred ----HHH---H-cCCC-----chhhHHHHhhccceEEc
Q 037416 292 ----FLN---A-SGFY-----PEIGIRVLVDKSLIAID 316 (362)
Q Consensus 292 ----~~~---~-~~~~-----~~~~l~~L~~~~Li~~~ 316 (362)
+.. . -+.. ....+.+|...|+|...
T Consensus 1049 rYk~Lce~~Gk~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1049 RYKVLVETSGKYIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred HHHHHHHhhhhhcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 111 0 0111 23357888888888754
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.18 E-value=2.5e-09 Score=97.80 Aligned_cols=198 Identities=17% Similarity=0.128 Sum_probs=111.6
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-cc-ceeeecccccccCCCchHHHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-EC-SCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 102 (362)
..-+.++|++...+.|.+++.. +..+.++++||+|+|||++|+.+++.+.... .. .+++.+...... . ...+.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~-~--~~~~~ 86 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ-G--KKYLV 86 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc-c--hhhhh
Confidence 3345689999999999998863 3345688999999999999999999875332 11 223321110000 0 00000
Q ss_pred H--HHHHHHhcC----CCCCCchHHHHHhh------CCceEEEEEeCCCCch--hhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 103 Q--KLLSNLLKD----KNVIPYIDLNFRRL------SRMKVLIVFDDVTCFN--QLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 103 ~--~l~~~~~~~----~~~~~~~~~~~~~l------~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
. .+....... ......+..+.... ...+-+||+||++... ....+...+......+++|+++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0 000000000 00011111111111 1234589999996442 2333433333334556777777543
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+... .+....+.+.+++.++...++...+...+.. ..++.++.+++.++|++--+....
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22222 2344678899999999999998876443322 446789999999999887764433
No 21
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.17 E-value=1.8e-09 Score=97.99 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=110.0
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKL 105 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (362)
.-+.++|++..++.|..++.. +..+.+.|+|++|+|||++++.++..+........++. +.. +. .... ......
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~-~~~~-~~~~~~ 88 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SD-ERGI-DVIRNK 88 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-cc-ccch-HHHHHH
Confidence 334589999999999999863 33445799999999999999999998643311111111 110 00 1111 111111
Q ss_pred HHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch--hhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEc
Q 037416 106 LSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN--QLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSKIYEM 181 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l 181 (362)
........+ .....+-++++|+++... ....+...+......+.+|+++... .+... .+....+.+
T Consensus 89 i~~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~ 158 (319)
T PRK00440 89 IKEFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRF 158 (319)
T ss_pred HHHHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeee
Confidence 111111110 001235689999996442 3444554444445566777766432 12111 123457899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 182 QALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 182 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
++++.++...++...+...+. ...++.++.+++.++|.+.-+..
T Consensus 159 ~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 159 SPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999887754332 23467899999999999887543
No 22
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.17 E-value=8.9e-10 Score=103.06 Aligned_cols=181 Identities=20% Similarity=0.294 Sum_probs=108.8
Q ss_pred CCCCCCcccccchHHH---HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTVDE---IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~---l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.|||++..+.. |..++. ....+.++|+|++|+||||||+.+++.....|.. +. . . ......
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~-a--~---~~~~~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS-A--V---TSGVKD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-c--c---cccHHH
Confidence 4445669999988766 888776 3445578899999999999999999976543311 11 0 0 111111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEE--EeCChH--HH-hhc
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIII--TTRNKQ--VL-RNW 173 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ili--tsr~~~--~~-~~~ 173 (362)
+ +.+...... ....+++.++++|+++.. ...+.++..+.. +..+++ |+.+.. +. ...
T Consensus 77 i-r~ii~~~~~------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 77 L-REVIEEARQ------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred H-HHHHHHHHH------------hhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHh
Confidence 1 112111110 011346789999999743 345555554432 333333 233321 11 112
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhhcCCCC-CCChHHHHHHHHHHcCCCchHHHHHhhh
Q 037416 174 GVSKIYEMQALEYHHALELFCRHAFKQNHP-DVGYEELSSKAMNYAQGVPLALNVLGCF 231 (362)
Q Consensus 174 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 231 (362)
+....+.+.+++.++...++...+...... ....++..+.+++.++|++..+..+...
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334678999999999999998765332111 1345678899999999999876544433
No 23
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.16 E-value=3.8e-10 Score=93.64 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=102.9
Q ss_pred CCCCCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLA 99 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (362)
.|..-+.|||.+..+..+.-++.. .+.....+.+|||+|+||||||.-+++....+|.. .. ... .....
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~s-g~~----i~k~~ 90 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TS-GPA----IEKAG 90 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EE-CCC------SCH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---cc-chh----hhhHH
Confidence 455677899999999998766653 33456789999999999999999999998766531 11 100 11112
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCC--------CC-----------CCc
Q 037416 100 CLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDR--------LT-----------PVS 158 (362)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~--------~~-----------~~~ 158 (362)
++...+ ..+ +++.++++|+++ +...-+.+.+.+.+ .+ +-.
T Consensus 91 dl~~il------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 91 DLAAIL------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHHHHH------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHHHHH------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 222111 111 234588889996 33333333332211 01 112
Q ss_pred EEEEEeCChHHHhhcC--CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC
Q 037416 159 RIIITTRNKQVLRNWG--VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE 234 (362)
Q Consensus 159 ~ilitsr~~~~~~~~~--~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~ 234 (362)
-|-.|||...+...+. .....+++..+.+|..+++.+.+.--+ -...++.+..|+..|.|-|-..+-+.+.++.
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 2446777653333322 234568999999999999987653322 2345688999999999999988877776654
No 24
>PLN03025 replication factor C subunit; Provisional
Probab=99.16 E-value=3.6e-09 Score=95.68 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=111.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
|..-+.++|.+..+..|.+++.. +..+.+.++||+|+||||+|..+++.+.. .+...+.-.+. +. ..+ .+..
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd-~~~-~~~v 81 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SD-DRG-IDVV 81 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---cc-ccc-HHHH
Confidence 44445689999999999988763 34455789999999999999999998633 22222211111 11 111 1222
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCce
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSKI 178 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~~ 178 (362)
+.....+...... ...++.-++++|+++.. ..-..+...+......+++++++... .+.+. .+....
T Consensus 82 r~~i~~~~~~~~~---------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 82 RNKIKMFAQKKVT---------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHhcccc---------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 2222221111100 00134669999999744 33344444343334556677766432 22111 123457
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 179 YEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 179 ~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
+++++++.++....+...+...+.. ..++.++.|++.++|....+...
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999998877443322 33678899999999988665433
No 25
>PRK08727 hypothetical protein; Validated
Probab=99.16 E-value=1.6e-09 Score=93.23 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=101.1
Q ss_pred CCcccccc-hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH
Q 037416 28 NQLVGVES-TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 28 ~~~vGR~~-el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
+.|++... .+..+..... +.....++|+|++|+|||+|+..+++........+.|+.... ........+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~--~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~--------~~~~~~~~~ 88 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAA--GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA--------AAGRLRDAL 88 (233)
T ss_pred hhccCCcHHHHHHHHHHHh--ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH--------hhhhHHHHH
Confidence 34555443 3444444332 223456999999999999999999998766544455554111 000011111
Q ss_pred HHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch---hh-hHhhccCCCC-CCCcEEEEEeCCh---------HHHhh
Q 037416 107 SNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN---QL-ESLIGSLDRL-TPVSRIIITTRNK---------QVLRN 172 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~---~~-~~l~~~~~~~-~~~~~ilitsr~~---------~~~~~ 172 (362)
. .+ ...-+||+||++... .+ ..+...++.. ..+..+|+|++.. ++.+.
T Consensus 89 ~-----------------~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SR 150 (233)
T PRK08727 89 E-----------------AL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSR 150 (233)
T ss_pred H-----------------HH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHH
Confidence 1 11 123489999995321 22 2233322221 2345689988743 22233
Q ss_pred cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 173 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
+.....+++++++.++..+++..++...+ -...++..+.|++.++|-.-.+..+.
T Consensus 151 l~~~~~~~l~~~~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 151 LAQCIRIGLPVLDDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HhcCceEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 34466899999999999999998664432 22446788899999987766654333
No 26
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=4.8e-09 Score=101.47 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=114.5
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.+||.+..++.|..++..+ .-.+.++++|+.|+||||+++.+++.+...... -...|.. -..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~-~~~PCG~---------C~sCr 80 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV-TSQPCGV---------CRACR 80 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC-CCCCCcc---------cHHHH
Confidence 334456999999999999998732 235677899999999999999999976421000 0000000 00000
Q ss_pred HHHHH-----HhcCC--C-CCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChH
Q 037416 104 KLLSN-----LLKDK--N-VIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQ 168 (362)
Q Consensus 104 ~l~~~-----~~~~~--~-~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~ 168 (362)
.+... +..+. . ....+..+.+. ..++.-++|||+++.. ..+..++..+..-....++|++|++..
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 00000 00000 0 00111111111 1234568999999744 346666666555556778888777652
Q ss_pred H-Hhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch-HHHHH
Q 037416 169 V-LRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL-ALNVL 228 (362)
Q Consensus 169 ~-~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~ 228 (362)
. ... .+....+.+.+++.++..+.+...+...+. ...++.++.|++.++|... +++.+
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 212 244578999999999999999887644322 2346788999999999765 44443
No 27
>PRK05642 DNA replication initiation factor; Validated
Probab=99.11 E-value=2.9e-09 Score=91.67 Aligned_cols=154 Identities=17% Similarity=0.223 Sum_probs=95.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
...++|+|++|+|||+|++.+++.+......++|++. . ++... ...+.+.+.+-.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~----------~~~~~--------------~~~~~~~~~~~d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-A----------ELLDR--------------GPELLDNLEQYE 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-H----------HHHhh--------------hHHHHHhhhhCC
Confidence 3578999999999999999999887654344555541 1 11110 011222222222
Q ss_pred EEEEEeCCCCc---hhhh-HhhccCCCC-CCCcEEEEEeCCh---------HHHhhcCCCceEEcCCCCHHHHHHHHHHh
Q 037416 131 VLIVFDDVTCF---NQLE-SLIGSLDRL-TPVSRIIITTRNK---------QVLRNWGVSKIYEMQALEYHHALELFCRH 196 (362)
Q Consensus 131 ~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~ilitsr~~---------~~~~~~~~~~~~~l~~l~~~e~~~ll~~~ 196 (362)
++++||+... ..++ .+...++.. ..+..+|+|++.. ++.+.+.....+++.+++.++....+..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6889999522 2332 243333322 2356788888643 22222334578899999999999999866
Q ss_pred hhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 197 AFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
+...+ ....++..+.|++.+.|..-.+..+...+
T Consensus 179 a~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 179 ASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 54432 22346888999999998877776555544
No 28
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.11 E-value=4.1e-09 Score=90.87 Aligned_cols=175 Identities=14% Similarity=0.191 Sum_probs=103.2
Q ss_pred CCcccccc-hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH
Q 037416 28 NQLVGVES-TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 28 ~~~vGR~~-el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
+.++|... .+..+.++.. ....+.++|+||+|+|||+|+..+++........+.|+. .... ..... .+
T Consensus 23 ~f~~~~n~~a~~~l~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~---~~~~~----~~- 91 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALR--QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR---AWFVP----EV- 91 (235)
T ss_pred ccccCccHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH---hhhhH----HH-
Confidence 34456333 3334444443 233457899999999999999999998765433444444 1110 00000 11
Q ss_pred HHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc---hhhhH-hhccCCCC--CCCcEEEEEeCCh---------HHHh
Q 037416 107 SNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF---NQLES-LIGSLDRL--TPVSRIIITTRNK---------QVLR 171 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~~~~-l~~~~~~~--~~~~~ilitsr~~---------~~~~ 171 (362)
.+.+.. --++++||++.. ..|+. +...++.. ..+.++|+||+.+ ++.+
T Consensus 92 ----------------~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 92 ----------------LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred ----------------HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 111111 137899999532 22322 22222221 2234788888744 3334
Q ss_pred hcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 172 NWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 172 ~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
.+.....+++.+++.++..+++.+++...+ -...++..+.|++.+.|..-.+..+...+
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 445667899999999999999987664332 23457889999999998887765555443
No 29
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.11 E-value=2.3e-09 Score=91.19 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=107.1
Q ss_pred CCCcccccchHH-HHHHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-ccc-ceeeecccccccCCCchHHHH
Q 037416 27 KNQLVGVESTVD-EIESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGD-FEC-SCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 27 ~~~~vGR~~el~-~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 102 (362)
+..++|-..++. .....+.. .+.....+.|+|++|+|||+|++.+++.+... ... ++|++ ..++.
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~ 76 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFI 76 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHH
Confidence 344567655433 23333332 23334568999999999999999999987543 233 33443 22344
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh---h-hHhhccCCCC-CCCcEEEEEeCCh---------H
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ---L-ESLIGSLDRL-TPVSRIIITTRNK---------Q 168 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~---~-~~l~~~~~~~-~~~~~ilitsr~~---------~ 168 (362)
..+...... .....+...+.+ --++++||++.... + +.+...++.. ..+.++|+|+... +
T Consensus 77 ~~~~~~~~~-----~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 77 REFADALRD-----GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHHHHHHHT-----TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHHHHHHHc-----ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 444333333 233445555543 34888999953322 2 2232222221 2456789998532 3
Q ss_pred HHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 169 VLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 169 ~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
+.+.+.....++|.+.+.++..+++..++...+.. ..++..+.|++.+.++.-.|..+...+
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 33444566789999999999999999887554433 446888889999888877776555443
No 30
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.8e-09 Score=91.68 Aligned_cols=266 Identities=17% Similarity=0.233 Sum_probs=161.4
Q ss_pred CCCCCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLA 99 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (362)
.|..-..|||.++..++|.=++.. .+...-.++++||+|.||||||.-+++.+..++. ++... .-..+.++.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp-~leK~gDla 95 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGP-ALEKPGDLA 95 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccc-cccChhhHH
Confidence 455667799999999998777764 3445778999999999999999999998754422 11000 000022222
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh-hhHhh-ccCCC-------------------CCCCc
Q 037416 100 CLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ-LESLI-GSLDR-------------------LTPVS 158 (362)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~-~~~l~-~~~~~-------------------~~~~~ 158 (362)
.+ ...+. ..=++.+|+++-... .++++ +.+.+ ..+-.
T Consensus 96 ai---------------------Lt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 96 AI---------------------LTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred HH---------------------HhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 21 11222 223667788853321 22222 11110 11222
Q ss_pred EEEEEeCChHHHhhc--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCC
Q 037416 159 RIIITTRNKQVLRNW--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYERE 236 (362)
Q Consensus 159 ~ilitsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~ 236 (362)
-|=.|||...+.+.+ ......+++..+.+|..+.+.+.+.- ......++.+.+|+.++.|-|...+-+.+.++...
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa 231 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFA 231 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 355688865333222 24557889999999999999877622 22234467789999999999998777766654311
Q ss_pred HHHHHHHHHH--HhccCCccHHHHHhccccCCChhhhhhhhhhhc-c-CCCccHHHHHHHHHHcCCCchhhHH-HHhhcc
Q 037416 237 KEVWESAINK--LQRILHPSILEVLKISYDGLDNKEKNIFLDVAC-F-FRGEHVNLVMKFLNASGFYPEIGIR-VLVDKS 311 (362)
Q Consensus 237 ~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~-~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~ 311 (362)
.+... +...........+...-..|+...+++|..+.- | ..++..+.++...+.+....++.++ -|.+.|
T Consensus 232 -----~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 232 -----QVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQG 306 (332)
T ss_pred -----HHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhc
Confidence 00000 000011223344444455666666777776654 3 3448889898888877666666666 499999
Q ss_pred ceEEccCCcEE
Q 037416 312 LIAIDSHKKIT 322 (362)
Q Consensus 312 Li~~~~~~~~~ 322 (362)
+++.+.+|+..
T Consensus 307 fi~RTpRGR~a 317 (332)
T COG2255 307 FIQRTPRGRIA 317 (332)
T ss_pred hhhhCCCccee
Confidence 99999888754
No 31
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.2e-08 Score=93.69 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=113.8
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
..-+.++|.+...+.|...+..+ .-++.++++||+|+||||+|+.+++.+........- .+.. ......+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~-pc~~-----c~~c~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN-PCRK-----CIICKEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC-CCCC-----CHHHHHHhcC
Confidence 44456899999999999988732 235678999999999999999999986421110000 0000 0000000000
Q ss_pred HHHHH---hcCC-CCCCchHHHHHhh-----CCceEEEEEeCCCCch--hhhHhhccCCCCCCCcEEEEEeCCh-HHHhh
Q 037416 105 LLSNL---LKDK-NVIPYIDLNFRRL-----SRMKVLIVFDDVTCFN--QLESLIGSLDRLTPVSRIIITTRNK-QVLRN 172 (362)
Q Consensus 105 l~~~~---~~~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~ 172 (362)
....+ .... .....+..+...+ .++.-++|+|+++... .+..++..+...+....+|+++.+. .+.+.
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 0000 0011111122221 2345699999997443 4566666665555666677766543 33322
Q ss_pred -cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 173 -WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 173 -~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+....+++.+++.++..+++...+...+. ...++.++.|+..++|.|.-+....
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 234568999999999999999887644331 2345778899999999997554333
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.6e-08 Score=96.85 Aligned_cols=191 Identities=14% Similarity=0.117 Sum_probs=115.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.+||.+...+.|..++..+ .-.+.++++|+.|+||||+|+.+++.+........ ..| ..-..++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~-~pC---------g~C~sC~ 79 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS-TPC---------EVCATCK 79 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC-CCC---------ccCHHHH
Confidence 344456999999999999999732 22578899999999999999999998632110000 000 0000000
Q ss_pred HHHHHHh-------cCCC-CCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChH
Q 037416 104 KLLSNLL-------KDKN-VIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQ 168 (362)
Q Consensus 104 ~l~~~~~-------~~~~-~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~ 168 (362)
.+..... .... ....+..+... ..++.-++|+|+++.. .....++..+........+|+++.+..
T Consensus 80 ~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~ 159 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQ 159 (702)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChH
Confidence 1100000 0000 01111111111 1245568999999743 455666666555556677787776542
Q ss_pred -HH-hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 169 -VL-RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 169 -~~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
+. ...+....+++.+++.++..+.+...+...+. ...++.+..|++.++|.+..+..
T Consensus 160 kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 160 KLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 21 22345678999999999999999887744332 23467788999999998866543
No 33
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.07 E-value=4.8e-09 Score=98.59 Aligned_cols=189 Identities=15% Similarity=0.181 Sum_probs=112.6
Q ss_pred CcccccchH--HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-ccc-ceeeecccccccCCCchHHHHHH
Q 037416 29 QLVGVESTV--DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FEC-SCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 29 ~~vGR~~el--~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
.++|..... ....++....+.....++|+|+.|+|||+|++.+++.+... ... ++++. ..++...
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~ 185 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARK 185 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 456765542 22333333222234568999999999999999999976532 222 33333 1234444
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc----hhhhHhhccCCCC-CCCcEEEEEeCCh---------HHH
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF----NQLESLIGSLDRL-TPVSRIIITTRNK---------QVL 170 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----~~~~~l~~~~~~~-~~~~~ilitsr~~---------~~~ 170 (362)
+...+.... .....+...... .-+|++||+... ...+.+...++.. ..+..+|+||... .+.
T Consensus 186 ~~~~l~~~~---~~~~~~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~ 261 (450)
T PRK14087 186 AVDILQKTH---KEIEQFKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLI 261 (450)
T ss_pred HHHHHHHhh---hHHHHHHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHH
Confidence 444333211 123334444433 347889999532 2234444333322 2334677876532 223
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
+.+.....+.+.+++.++..+++...+...+......++.++.|++.++|+|-.+..+...+
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 33445678889999999999999988754332224567899999999999999987665444
No 34
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.05 E-value=3.8e-09 Score=90.84 Aligned_cols=176 Identities=15% Similarity=0.156 Sum_probs=101.7
Q ss_pred CCCCCCcc-cccchHHH-HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHH
Q 037416 24 RDNKNQLV-GVESTVDE-IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 24 ~~~~~~~v-GR~~el~~-l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
+..-+.|+ |+..++.. +.++.. .....+.++|+|++|+|||+||..+++.........+++.+ .. ...
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~-------~~~- 83 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-AS-------PLL- 83 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HH-------hHH-
Confidence 33344555 55544433 444443 22345678999999999999999999986443233444431 11 000
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCC-CCC-cEEEEEeCChHH--------
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRL-TPV-SRIIITTRNKQV-------- 169 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~-~~~-~~ilitsr~~~~-------- 169 (362)
.+ .. ....-++++||++.. .....+...+... ..+ ..++++++....
T Consensus 84 --~~------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 84 --AF------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred --HH------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 00 00 112347889999633 2223333333221 122 236666654321
Q ss_pred HhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 170 LRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 170 ~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
.+.+.....+++++++.++...++.......+ ....++..+.+++.+.|++..+..+...+
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11223346899999999988887776543222 22446789999999999999987776654
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.2e-08 Score=95.22 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=112.9
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc--Ccccceeeeccc-ccc-cCCCchHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG--DFECSCFLENVR-EES-QRPGGLACL 101 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~-~~~-~~~~~~~~~ 101 (362)
.-+.++|.+...+.|..++..+ .-.+.++++||+|+||||+|+.+++.+.. .....++.+..- ... ....++..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 3445899999999999988742 23566799999999999999999998642 122222221000 000 000000000
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK-QVLRN- 172 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~- 172 (362)
- .........+..+... ..+++-++|+|+++.. ..+..++..+......+.+|+++... .+...
T Consensus 91 ~-------~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 91 D-------AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred c-------ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 0 0000011111112111 1245568999999733 44666666665444555666555433 33222
Q ss_pred cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 173 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
.+....+++.+++.++..+++...+...+.. ..++.++.|++.++|.+.-+.
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2345689999999999999999877544322 246788999999999997654
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=99.05 E-value=1.4e-08 Score=96.99 Aligned_cols=186 Identities=16% Similarity=0.169 Sum_probs=113.3
Q ss_pred CCCCCCcccccchHHHHHHHhccC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVE--SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
|...+.++|+++..++|.+|+... +...+.++|+||+|+||||+|..+++.+. +. +...+.. +......
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielnas-----d~r~~~~ 80 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNAS-----DQRTADV 80 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEccc-----ccccHHH
Confidence 334456999999999999998742 12267899999999999999999999863 11 1111111 1111222
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch------hhhHhhccCCCCCCCcEEEEEeCCh-HHH--hh
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN------QLESLIGSLDRLTPVSRIIITTRNK-QVL--RN 172 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~------~~~~l~~~~~~~~~~~~ilitsr~~-~~~--~~ 172 (362)
...+......... .....+.+||+|+++... ....+...+. ...+.+|+++.+. ... ..
T Consensus 81 i~~~i~~~~~~~s----------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 81 IERVAGEAATSGS----------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHHHHHhhccCc----------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 2233222111110 011356799999996442 2444444433 2234466666432 111 11
Q ss_pred cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 173 WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 173 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
-.....+.+.+++..+....+...+...+.. ..++.++.|++.++|....+......+
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2345679999999999999998876443322 346789999999999887765433333
No 37
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.04 E-value=2.3e-10 Score=102.12 Aligned_cols=282 Identities=18% Similarity=0.222 Sum_probs=187.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-CCCchHHHHHhhCC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-VIPYIDLNFRRLSR 128 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~ 128 (362)
..+.+.++|++||||||++.++.. +...|...+++........ ...+.-.+...+..... ..+..+.+......
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD----~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD----PALVFPTLAGALGLHVQPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc----hhHhHHHHHhhcccccccchHHHHHHHHHHhh
Confidence 477899999999999999999999 8888888888775555332 22222223332333222 34455667788888
Q ss_pred ceEEEEEeCCCCch-hhhHhhccCCCCCCCcEEEEEeCChHHHhhcCCCceEEcCCCCHH-HHHHHHHHhhhcCC---CC
Q 037416 129 MKVLIVFDDVTCFN-QLESLIGSLDRLTPVSRIIITTRNKQVLRNWGVSKIYEMQALEYH-HALELFCRHAFKQN---HP 203 (362)
Q Consensus 129 ~~~llvlDd~~~~~-~~~~l~~~~~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~-e~~~ll~~~~~~~~---~~ 203 (362)
++.++++||+.+.. +-..+...+...+....++.|+|..... ....+..+++++.. ++.++|..++.... .-
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 99999999996443 2333333333345556788898875222 23445667777765 68888776553322 12
Q ss_pred CCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCHHHHHHHHHHH----hcc------CCccHHHHHhccccCCChhhhhh
Q 037416 204 DVGYEELSSKAMNYAQGVPLALNVLGCFLYEREKEVWESAINKL----QRI------LHPSILEVLKISYDGLDNKEKNI 273 (362)
Q Consensus 204 ~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~l----~~~------~~~~~~~~~~~~~~~L~~~~~~~ 273 (362)
..........|....+|.|++|..++...+..........++.- ... -.......+..++.-|+..++-.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~ 244 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERAL 244 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHH
Confidence 22345678889999999999999999998886555544444331 111 01445667888899999999999
Q ss_pred hhhhhccCCCccHHHHHHHHHH-----cCCCchhhHHHHhhccceEEcc---CCcEEecHHHHHHHHHHHHhhc
Q 037416 274 FLDVACFFRGEHVNLVMKFLNA-----SGFYPEIGIRVLVDKSLIAIDS---HKKITMLDLLQELGREIVRQES 339 (362)
Q Consensus 274 l~~ls~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~L~~~~Li~~~~---~~~~~~H~li~~~~~~~~~~~~ 339 (362)
+.-++.|...|........... +.+..-..+-.+++++++.... ...|+.-+-.+.|+.+.+.+.+
T Consensus 245 ~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~ 318 (414)
T COG3903 245 FGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG 318 (414)
T ss_pred hcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999988887632222111 1222333577899999998654 3458888888888888877665
No 38
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.2e-08 Score=90.95 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=115.6
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc----cceeeecccccccCCCch
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFE----CSCFLENVREESQRPGGL 98 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 98 (362)
.|.....++|.+...+.|...+.++ ..++.++|+|+.|+||||+|..+++.+..... ...... +...
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~--------~~~~ 88 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD--------PDPA 88 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC--------CCCC
Confidence 5556677999999999999998733 23667999999999999999999998644211 000000 0000
Q ss_pred HHHHHHHHHHHh-----------cCC---CC---CCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCC
Q 037416 99 ACLRQKLLSNLL-----------KDK---NV---IPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRL 154 (362)
Q Consensus 99 ~~~~~~l~~~~~-----------~~~---~~---~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~ 154 (362)
...++.+..... ... .. ...+..+.+.+ .++.-++|+|+++ +......++..+..-
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 112222211100 000 00 11111122222 2456799999996 444455555555444
Q ss_pred CCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 155 TPVSRIIITTRNK-QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 155 ~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
..++.+|+++..+ .+.+. .+....+++.+++.++..+++....... . ..++....++..++|+|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4555555555433 23222 2345689999999999999998743111 1 335668899999999999765544
No 39
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1e-08 Score=101.14 Aligned_cols=191 Identities=15% Similarity=0.140 Sum_probs=116.9
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc---cceeee-ccccccc------
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFE---CSCFLE-NVREESQ------ 93 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~-~~~~~~~------ 93 (362)
|..-+.+||.+..+..|..++..+ .-.+.++++|+.|+||||+|+.+++.+..... ..+..+ .+.....
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 344456999999999999988732 22566789999999999999999998743211 001110 0000000
Q ss_pred -----CCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC
Q 037416 94 -----RPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 94 -----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
....-.+..+.+...+. .....++.-++|||+++ +......|+..+..-...+++|+++.+
T Consensus 91 iEidAas~~kVDdIReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 91 IEVDAASRTKVDDTRELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred EEeccccccCHHHHHHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 00000011111111110 01123456799999996 445667777666655566777766654
Q ss_pred h-HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 167 K-QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 167 ~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
. .+... .+....+++.+++.++..+++...+...+ ....++.++.|+..++|.|.-+..++
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 33322 23457899999999999999988764322 22446788999999999997655443
No 40
>PF13173 AAA_14: AAA domain
Probab=99.02 E-value=2.8e-09 Score=82.92 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=76.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
.++++|+|+.|+||||+++++++++. .....+++...+. . ..... . . ...+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~-~-----~~~~~--------~-~---~~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP-R-----DRRLA--------D-P---DLLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH-H-----HHHHh--------h-h---hhHHHHHHhhccCC
Confidence 45789999999999999999999876 2234455541111 0 00000 0 0 01122233333467
Q ss_pred EEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhh------cCCCceEEcCCCCHHHH
Q 037416 131 VLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN------WGVSKIYEMQALEYHHA 189 (362)
Q Consensus 131 ~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~------~~~~~~~~l~~l~~~e~ 189 (362)
.+++||++.....|......+.+..++.++++|+........ .+....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999998777777777666555567899999987644422 12335689999998773
No 41
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=1.4e-08 Score=96.92 Aligned_cols=193 Identities=12% Similarity=0.088 Sum_probs=114.8
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc----ccceeeecccccccCCCchH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF----ECSCFLENVREESQRPGGLA 99 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 99 (362)
|..-+.+||.+...+.|.+++..+ .-.+.++++|+.|+||||+|+.+++.+...- .....-.|.. -
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~---------C 81 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ---------C 81 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc---------c
Confidence 334456999999999999999732 2356779999999999999999999864310 0000000000 0
Q ss_pred HHHHHHHHH-----HhcCC---CCCCchHHHHHh-----hCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEe
Q 037416 100 CLRQKLLSN-----LLKDK---NVIPYIDLNFRR-----LSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 100 ~~~~~l~~~-----~~~~~---~~~~~~~~~~~~-----l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilits 164 (362)
..+..+... +..+. .....+..+.+. ..++.-++|||+++ +......++..+..-..++.+|++|
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 001111000 00000 011111112221 13455699999997 4445667776666555667777666
Q ss_pred CCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 165 RNK-QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 165 r~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
.+. .+... .+....+.+.+++.++..+.+...+...+. ...++.++.|++.++|.|.-...+
T Consensus 162 tep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 162 TDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 544 33222 234568899999999999999877643322 233566788999999999765444
No 42
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.9e-08 Score=91.89 Aligned_cols=198 Identities=10% Similarity=0.050 Sum_probs=114.7
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc--ccceeeecccccccCCCchHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF--ECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 100 (362)
.|...+.++|.+...+.|.+.+..+ .-.+.+.++|+.|+||+++|..+++.+-..- ............ . ...--.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l-~-~~~~c~ 90 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL-A-IDPDHP 90 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc-c-CCCCCh
Confidence 4555677999999999999988732 2366799999999999999999999863211 100000000000 0 000001
Q ss_pred HHHHHHHHHhcC---------C------C--CCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCC
Q 037416 101 LRQKLLSNLLKD---------K------N--VIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTP 156 (362)
Q Consensus 101 ~~~~l~~~~~~~---------~------~--~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~ 156 (362)
.++.+......+ . . ..+.+..+...+ .+.+.++|+|+++ +......++..+..-..
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 111111110000 0 0 011112222222 2466799999996 45556666655554455
Q ss_pred CcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 157 VSRIIITTRNK-QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 157 ~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
++.+|++|... .+.+. .+....+.+.+++.++..+++...... . .......++..++|+|.....+.
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~---~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L---PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 66677766654 33222 245678999999999999999876411 1 12233778999999999765554
No 43
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.97 E-value=2.5e-09 Score=88.87 Aligned_cols=50 Identities=32% Similarity=0.510 Sum_probs=35.6
Q ss_pred CcccccchHHHHHHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 29 QLVGVESTVDEIESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.|+||++++++|...+.. .....+.++|+|++|+|||+|++.++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999942 34457899999999999999999999988766
No 44
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=4.2e-08 Score=94.80 Aligned_cols=193 Identities=14% Similarity=0.082 Sum_probs=113.2
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+..++.|..++..+ .-.+.++++|+.|+||||+|+.+++.+..... .....|..+ ..++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C---------~sCr 80 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVC---------QSCT 80 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCccc---------HHHH
Confidence 334456999999999999998732 22567899999999999999999997532211 000000000 0000
Q ss_pred HHHHH-----Hhc--CC-CCCCchHHHHHh-----hCCceEEEEEeCCCCch--hhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 104 KLLSN-----LLK--DK-NVIPYIDLNFRR-----LSRMKVLIVFDDVTCFN--QLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 104 ~l~~~-----~~~--~~-~~~~~~~~~~~~-----l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
.+... +.. .. .....+..+... ..++.-++|||+++... ....++..+......+.+|+++.+.
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 00000 000 00 011111122211 12355689999997443 3445555554444566777776543
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+... .+....+.+.+++.++..+.+...+...+. ...+..+..|++.++|.+.-+..+.
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence 22111 233457888999999999999887754332 2346788999999999997665444
No 45
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.8e-07 Score=90.42 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=114.7
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc----ccceeeecccccccCCCchHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF----ECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 100 (362)
..-+.+||.+...+.|.+++..+ .-.+.++++|+.|+||||+|+.+++.+...- .....-. .+.-.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p---------Cg~C~ 82 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP---------CGVCQ 82 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC---------CCccH
Confidence 34456899999999999998732 2356789999999999999999998763210 0000000 00001
Q ss_pred HHHHHHHHH-------hcCC-CCCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeC
Q 037416 101 LRQKLLSNL-------LKDK-NVIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 101 ~~~~l~~~~-------~~~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr 165 (362)
-++.+.... .... .....+..+.+.. .++.-++|||+++ +......++..+..-...+.+|++|.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 111110000 0000 0111111222221 2344589999997 44456667766665556667776664
Q ss_pred Ch-HHH-hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 166 NK-QVL-RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 166 ~~-~~~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
+. .+. ...+....+.+.+++.++..+.+...+...+.. ..++.+..|++.++|.+.-+..+
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 42 222 223456789999999999999998876443322 34577899999999988766444
No 46
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.95 E-value=8.7e-08 Score=88.26 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=112.9
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc-----c----------------c
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFE-----C----------------S 82 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----~----------------~ 82 (362)
|..-+.++|.+..++.|.+++..+ .-.+.+.++|++|+|||++|+.++..+..... + .
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 344456899999999999988632 23567889999999999999999988642200 0 0
Q ss_pred eeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEE
Q 037416 83 CFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRI 160 (362)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i 160 (362)
+++.. .. ... .+-.+.+....... -..+.+-++|+|+++.. .....++..+......+.+
T Consensus 89 ~~~~~----~~-~~~-~~~~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDA----AS-NNG-VDDIREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeec----cc-cCC-HHHHHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 00100 00 000 00111111111100 01234558999999644 4455666555544456666
Q ss_pred EEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 161 IITTRNKQ-VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 161 litsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
|+++.+.. +.+. .+....+++.+++.++..+++...+...+. ...++.++.+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 66665443 2222 234567889999999999999987754432 2335788999999999998765444
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.95 E-value=8.3e-09 Score=90.46 Aligned_cols=179 Identities=17% Similarity=0.270 Sum_probs=107.8
Q ss_pred CCCCCCCcccccchHHH---HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchH
Q 037416 23 PRDNKNQLVGVESTVDE---IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLA 99 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~---l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (362)
.|..-+.+||.+..+-+ |..+++ .+..+.+++|||+|+||||||+.++..-+.+- ..|+. .+.......
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~ 204 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTN 204 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchH
Confidence 34444557776665544 344444 45677899999999999999999999765542 33443 222122222
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEE--EeCChHHH---hh
Q 037416 100 CLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIII--TTRNKQVL---RN 172 (362)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ili--tsr~~~~~---~~ 172 (362)
++. .++.+... ...+.+++.++++|+++ +..+-+.|++... +|..++| ||.++.+. ..
T Consensus 205 dvR-~ife~aq~-----------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 205 DVR-DIFEQAQN-----------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHH-HHHHHHHH-----------HHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHH
Confidence 221 22222111 12345789999999994 6666666665543 4444444 66655332 22
Q ss_pred cCCCceEEcCCCCHHHHHHHHHHhh---hcCC-----CCC---CChHHHHHHHHHHcCCCchH
Q 037416 173 WGVSKIYEMQALEYHHALELFCRHA---FKQN-----HPD---VGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 173 ~~~~~~~~l~~l~~~e~~~ll~~~~---~~~~-----~~~---~~~~~~~~~i~~~~~G~Pl~ 224 (362)
++...++-|++|+.++...++.+-. .... .+. ...+.+++.++..|+|-..+
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 3455688899999999998887622 1111 111 23557788899999887654
No 48
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=5.9e-08 Score=89.37 Aligned_cols=183 Identities=15% Similarity=0.095 Sum_probs=106.2
Q ss_pred CCcccccchHHHHHHHhccCCC--------CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchH
Q 037416 28 NQLVGVESTVDEIESLLGVESK--------GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLA 99 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~--------~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (362)
+.++|.+..++.|..++..+.. -.+.+.++||+|+|||++|..++..+...... .-.|..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C--------- 73 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGEC--------- 73 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCC---------
Confidence 3588999999999999875321 36779999999999999999999875322110 0000000
Q ss_pred HHHHHHHHHHhc-------CCC--CCCchHHHHHhh-----CCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEE
Q 037416 100 CLRQKLLSNLLK-------DKN--VIPYIDLNFRRL-----SRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIIT 163 (362)
Q Consensus 100 ~~~~~l~~~~~~-------~~~--~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilit 163 (362)
..++.+...... +.. ....+..+.+.. .++.-++++|+++. ......++..+..-+.+..+|++
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 000000000000 000 001111122221 23455888999963 33445555555444455666666
Q ss_pred eCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 164 TRNK-QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 164 sr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
+.+. .+.+. .+....+.+.+++.++..+++.... . ..++.+..++..++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~----~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---G----VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6543 33333 2445789999999999998887432 1 12456788999999999755433
No 49
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=9.9e-08 Score=90.43 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=112.6
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc---cceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFE---CSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-..++|.+.....|...+..+ .-.+.++++|++|+||||+|+.+++.+..... ...+..|..+ .
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C---------~ 86 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC---------T 86 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC---------h
Confidence 334456899999999999877632 23578899999999999999999998632110 0000000000 0
Q ss_pred HHHHHHHH-------HhcCC-CCCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEe-
Q 037416 101 LRQKLLSN-------LLKDK-NVIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITT- 164 (362)
Q Consensus 101 ~~~~l~~~-------~~~~~-~~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilits- 164 (362)
-+..+... +.... .....+..+.+. ..++.-++|+|+++.. ..+..++..+......+.+|+++
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00000000 00000 011111112221 1245668999999743 44666766655545556665544
Q ss_pred CChHHHhhc-CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 165 RNKQVLRNW-GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 165 r~~~~~~~~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
+...+...+ +....+.+.+++.++..+++...+...+. ...++.++.|++.++|.+.-+
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 433443332 34567999999999999999988754332 234577888999999988665
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=4.4e-08 Score=91.16 Aligned_cols=194 Identities=12% Similarity=0.060 Sum_probs=113.6
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+..+..|..++..+. -.+.++++||.|+||||+|+.+++.+........ ..+.. ......+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~-~pCg~-----C~sC~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN-EPCNE-----CTSCLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc-cccCC-----CcHHHHHHc
Confidence 3444568999999999999887322 2456899999999999999999998643211000 00000 000000000
Q ss_pred HHHHHH---hcCCC-CCCchHHHHH-----hhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC-hHHHh
Q 037416 104 KLLSNL---LKDKN-VIPYIDLNFR-----RLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN-KQVLR 171 (362)
Q Consensus 104 ~l~~~~---~~~~~-~~~~~~~~~~-----~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~-~~~~~ 171 (362)
.....+ ..... ....+..+.+ ...++.-++|+|+++ +......++..+..-...+.+|+++.. ..+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 000000 00000 0111111111 123456799999997 445577777666554455555555543 33322
Q ss_pred h-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 172 N-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 172 ~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
. .+....+.+.+++.++..+.+...+...+ ....++.+..|++.++|.+.-..
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHHH
Confidence 2 23456799999999999999988764332 22356788999999999986543
No 51
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.94 E-value=1.1e-07 Score=90.08 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=133.8
Q ss_pred CcccccchH--HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-cc-ceeeecccccccCCCchHHHHHH
Q 037416 29 QLVGVESTV--DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-EC-SCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 29 ~~vGR~~el--~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
.++|..... ....++....+.....++|+|++|+|||+|++.+++.+...+ .. ++|+. ..++...
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~ 192 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTND 192 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 345655542 223333332222345689999999999999999999976553 22 33333 1122223
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----hhhHhhccCCCC-CCCcEEEEEeCCh-H--------HH
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----QLESLIGSLDRL-TPVSRIIITTRNK-Q--------VL 170 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~ilitsr~~-~--------~~ 170 (362)
+...+.. .....+.+.+. ..-+|+|||++... ..+.+...+... ..+..+++|+... . +.
T Consensus 193 ~~~~~~~-----~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 193 FVNALRN-----NTMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HHHHHHc-----CcHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 3222221 12233444443 34489999995321 122333322211 1234577777533 1 12
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC--------CCHHHHHH
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE--------REKEVWES 242 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~--------~~~~~~~~ 242 (362)
+.+.....+.+.+.+.++..+++...+... .....++.++.|++.+.|..-.+.-+...+.. .+....+.
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~ 344 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKE 344 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 233445689999999999999999887542 22345688999999999998866444333321 24445555
Q ss_pred HHHHHhccC-----CccHHHHHhcccc----CC------C--hhhhhhhhhhhccCCCccHHHHHHHHH
Q 037416 243 AINKLQRIL-----HPSILEVLKISYD----GL------D--NKEKNIFLDVACFFRGEHVNLVMKFLN 294 (362)
Q Consensus 243 ~~~~l~~~~-----~~~~~~~~~~~~~----~L------~--~~~~~~l~~ls~~~~~~~~~~l~~~~~ 294 (362)
.++.+.... .+.+...+...|+ .| . ..+|++..|++---.+.+...+.+.++
T Consensus 345 ~l~~~~~~~~~~~~~~~i~~~v~~~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~fg 413 (450)
T PRK00149 345 ALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFG 413 (450)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHcC
Confidence 555431111 1223333333232 11 0 135666666666555666666666664
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=7.5e-08 Score=91.83 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=110.3
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCccc---ceeee-ccccccc-CCCchH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFEC---SCFLE-NVREESQ-RPGGLA 99 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~---~~~~~-~~~~~~~-~~~~~~ 99 (362)
..-+.++|.+..++.|..++..+ ...+.++++|+.|+||||+|+.+++.+...... .+-.+ .+..... ...++.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34456899999999999988732 235668899999999999999999976421100 00000 0000000 000000
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHh-----hCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHh
Q 037416 100 CLRQKLLSNLLKDKNVIPYIDLNFRR-----LSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLR 171 (362)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~-----l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~ 171 (362)
.+ .. ........+..+... ..+++-++|+|+++ +......++..+......+.+|++|.+. .+..
T Consensus 92 ei-----da--as~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~ 164 (546)
T PRK14957 92 EI-----DA--ASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPV 164 (546)
T ss_pred Ee-----ec--ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhh
Confidence 00 00 000000111111111 22456699999996 4445666766666555566666555433 2322
Q ss_pred h-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 172 N-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 172 ~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
. .+....+++.+++.++....+...+...+ ....+..+..|++.++|.+.-
T Consensus 165 tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~ 216 (546)
T PRK14957 165 TILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRD 216 (546)
T ss_pred hHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 2 34467899999999999988887664432 224567788999999998764
No 53
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1e-07 Score=89.59 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=111.6
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
..-+.+||.+...+.|..++..+ .-.+.+.++|+.|+||||+|+.++..+.-...... . +...-..+..
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~--~--------pCg~C~~C~~ 78 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS--D--------PCGTCHNCIS 78 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC--C--------CccccHHHHH
Confidence 44456899999999999988632 22568999999999999999999886521110000 0 0000000111
Q ss_pred HHHHHhc-----C---CCCCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC-hH
Q 037416 105 LLSNLLK-----D---KNVIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN-KQ 168 (362)
Q Consensus 105 l~~~~~~-----~---~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~-~~ 168 (362)
+...... + ......+..+.+.. .++.-++|+|+++ +......++..+..-.+.+.+|+++.+ ..
T Consensus 79 i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 79 IKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred HhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 1000000 0 00001111111111 2345689999996 334466666666555566666666543 33
Q ss_pred HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 169 VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 169 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
+... .+....+.+.+++.++..+.+...+...+. ...++.++.|++.++|.+..+.
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3332 245578999999999999999887754332 2346778899999999987543
No 54
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.92 E-value=1.6e-08 Score=93.24 Aligned_cols=178 Identities=18% Similarity=0.236 Sum_probs=103.1
Q ss_pred CCCCCCCcccccchHHHHHHHhccC--C---------CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVE--S---------KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~--~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
|....+.+.|++.+++++.+.+... . ..++.++|+||+|+|||++|+.++..+...|....
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-------- 188 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------- 188 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc--------
Confidence 3444456899999999998876421 1 22556999999999999999999998754432111
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch----------------hhhHhhccCCC-
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDR- 153 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 153 (362)
...+....... ....+.. +.......+.+|++|+++... .+..++..+..
T Consensus 189 ------~~~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 189 ------GSELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ------hHHHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 01111111000 0001111 112223467899999995431 12223222211
Q ss_pred -CCCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch
Q 037416 154 -LTPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 154 -~~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
...+..+|+||........ ......+.++..+.++..+++............ .....++..+.|..-
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~sg 329 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGASG 329 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCCH
Confidence 1235667777764422211 123457889999999999999887644433321 136778888887654
No 55
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=9.1e-08 Score=91.22 Aligned_cols=192 Identities=12% Similarity=0.050 Sum_probs=112.5
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.+||.+...+.|..++..+ .-.+.++++|++|+||||+|+.+++.+........ -.|.. -..+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~-~pCg~---------C~~C~ 80 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA-NPCND---------CENCR 80 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc-ccCCC---------CHHHH
Confidence 334456999999999999999732 23566899999999999999999997632110000 00000 00000
Q ss_pred HHHHHH-------hcC-CCCCCchHHHHHh-----hCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 104 KLLSNL-------LKD-KNVIPYIDLNFRR-----LSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 104 ~l~~~~-------~~~-~~~~~~~~~~~~~-----l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
.+.... ... ......+..+.+. ..++.-++|+|+++ +......++..+..-...+.+|++|.+.
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred HHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 000000 000 0001111111111 12345689999997 4445666666665555667777666543
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
.+... .+....+++.+++.++..+.+...+...+.. ..++.++.|++.++|.+.-+..+
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 22212 2345678899999999998888776443322 34567889999999998765443
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.5e-07 Score=88.87 Aligned_cols=191 Identities=17% Similarity=0.161 Sum_probs=109.7
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc---cceeee-cccc---------
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFE---CSCFLE-NVRE--------- 90 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~-~~~~--------- 90 (362)
|..-+.++|.+...+.|...+..+ .-++.++++||+|+||||+|+.+++.+...-. ..+..+ .+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 445566999999988888887632 22456899999999999999999987632100 000000 0000
Q ss_pred --ccc-CCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC
Q 037416 91 --ESQ-RPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 91 --~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr 165 (362)
... ...+...+ +.+...... ....+++-++|+|+++.. .....++..+......+.+|+++.
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilatt 155 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATT 155 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeC
Confidence 000 00111111 111111000 011245679999999643 345556655554444455554444
Q ss_pred C-hHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCC-chHHHHHhh
Q 037416 166 N-KQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGV-PLALNVLGC 230 (362)
Q Consensus 166 ~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~~ 230 (362)
+ ..+.+. .+....+.+.+++.++....+...+...+. ...++.++.|++.++|. +.+++.+-.
T Consensus 156 n~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 156 NLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred ChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3 233222 244568999999999999999887643322 23467788999988766 455655544
No 57
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.90 E-value=1.6e-07 Score=78.25 Aligned_cols=159 Identities=17% Similarity=0.175 Sum_probs=93.7
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC---------------------cccceeeecccccccCCCc
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD---------------------FECSCFLENVREESQRPGG 97 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ 97 (362)
.|.+.+.. +.-++.++++|+.|+|||++|..++..+... +....++. ... ...
T Consensus 3 ~l~~~i~~-~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~----~~~-~~~ 76 (188)
T TIGR00678 3 QLKRALEK-GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLE----PEG-QSI 76 (188)
T ss_pred HHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEec----ccc-CcC
Confidence 34555542 1235779999999999999999999986432 00001110 000 000
Q ss_pred hHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-c
Q 037416 98 LACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-W 173 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~ 173 (362)
-.+..+.+....... -..+.+-++|+||++. ....+.++..+...+..+.+|+++++. .+.+. .
T Consensus 77 ~~~~i~~i~~~~~~~------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 77 KVDQVRELVEFLSRT------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred CHHHHHHHHHHHccC------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 011111111111100 0124566899999963 344666666665555666777777643 22222 1
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch
Q 037416 174 GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 174 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
+....+.+.+++.++..+++... + ..++.++.+++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCcc
Confidence 34468999999999999999876 1 235679999999999985
No 58
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=3.7e-08 Score=84.13 Aligned_cols=146 Identities=10% Similarity=0.044 Sum_probs=92.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
..+.+.|+|++|+|||+|++.++... ...|+... .+...+...+ .
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~-----------~~~~~~~~~~-----------------~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPN-----------EIGSDAANAA-----------------A-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHH-----------HcchHHHHhh-----------------h--
Confidence 35678999999999999999888753 12244310 1111111110 0
Q ss_pred eEEEEEeCCCCch-hhhHhhccCCCC-CCCcEEEEEeCC---------hHHHhhcCCCceEEcCCCCHHHHHHHHHHhhh
Q 037416 130 KVLIVFDDVTCFN-QLESLIGSLDRL-TPVSRIIITTRN---------KQVLRNWGVSKIYEMQALEYHHALELFCRHAF 198 (362)
Q Consensus 130 ~~llvlDd~~~~~-~~~~l~~~~~~~-~~~~~ilitsr~---------~~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~ 198 (362)
.-++++||++... .-+.+...++.. ..+..+|+|++. +++.+.+.....+++++++.++..+++.+.+.
T Consensus 88 ~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 88 EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 1278889995321 122333333222 235678888863 23444456678899999999999999998874
Q ss_pred cCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 199 KQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 199 ~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
..+ ....++..+.|++.+.|..-.+..+...+
T Consensus 168 ~~~--~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 168 DRQ--LYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HcC--CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 432 22446889999999999888776554443
No 59
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.89 E-value=5.5e-08 Score=96.03 Aligned_cols=177 Identities=18% Similarity=0.244 Sum_probs=102.9
Q ss_pred CCCCCCcccccchHH---HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTVD---EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el~---~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.|+|++..+. .|.+++. .+..+.++|+||+|+||||||+.+++.....|. .+.+. .....+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~------~~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV------LAGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh------hhhhHH
Confidence 445566899999884 5666665 344556889999999999999999987654431 11100 111111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEe--CChH--HHhh-c
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITT--RNKQ--VLRN-W 173 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilits--r~~~--~~~~-~ 173 (362)
+ +...... .... ...++..+++|||++ +....+.++..+. .+..+++.+ .++. +... .
T Consensus 93 i-r~~i~~a----------~~~l-~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 L-RAEVDRA----------KERL-ERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred H-HHHHHHH----------HHHh-hhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh
Confidence 1 1111110 0000 011356799999996 3344555554433 233344432 3221 1111 1
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhhcC-----CCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 174 GVSKIYEMQALEYHHALELFCRHAFKQ-----NHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 174 ~~~~~~~l~~l~~~e~~~ll~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
+....+.+++++.++...++...+... .......++..+.|++.+.|+.--+.
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 234578999999999999998766410 11223456788999999999876543
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=6.9e-08 Score=93.53 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=115.8
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.+||.+..++.|...+..+ .-.+.++++|+.|+||||+|+.+++.+....... .-.| ..-..++
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-~~pC---------g~C~~C~ 80 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-ATPC---------GECDNCR 80 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-CCCC---------CCCHHHH
Confidence 344466999999999999988732 2356678999999999999999999764321100 0000 0001111
Q ss_pred HHHHHH-------hcCC-CCCCchHHHHHh-----hCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 104 KLLSNL-------LKDK-NVIPYIDLNFRR-----LSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 104 ~l~~~~-------~~~~-~~~~~~~~~~~~-----l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
.+.... .... .....+..+... ..++.-++|||+++ +......++..+..-...+++|++|.+.
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 111000 0000 011111112211 23456799999996 4445666666655545566666665544
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+... .+....+++.+++.++..+.+...+...+. ...+..+..|+..++|.+.-...+.
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 234578999999999999999877633322 2345678889999999888654443
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=1.3e-07 Score=87.91 Aligned_cols=198 Identities=14% Similarity=0.150 Sum_probs=113.5
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC--cccceeeecccccccCCCchHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD--FECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
|..-+.++|.+...+.|.+++..+ .-.+.++++||+|+||||+|..+++.+... +....|...... +-..-.-
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~----~c~~c~~ 86 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE----PCGECES 86 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC----CCCCCHH
Confidence 334456899999999999988732 235668899999999999999999986321 100000000000 0000011
Q ss_pred HHHHHHHHhc-----CC---CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC-
Q 037416 102 RQKLLSNLLK-----DK---NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR- 165 (362)
Q Consensus 102 ~~~l~~~~~~-----~~---~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr- 165 (362)
++.+...... +. .....+..+.+.+ .+.+-++|+|+++.. ..+..++..+....+.+.+|+++.
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111100000 00 0111122222222 234568899999644 356666666655455666665553
Q ss_pred ChHHHhhc-CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 166 NKQVLRNW-GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 166 ~~~~~~~~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
...+.+.+ +....+++.+++.++..+++...+...+ ....++.++.+++.++|.+.-+...
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33333221 2345788999999999999988764322 1244678999999999998765443
No 62
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.88 E-value=1.9e-07 Score=87.78 Aligned_cols=183 Identities=12% Similarity=0.114 Sum_probs=105.5
Q ss_pred CcccccchHH--HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-cc-ceeeecccccccCCCchHHHHHH
Q 037416 29 QLVGVESTVD--EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-EC-SCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 29 ~~vGR~~el~--~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
+++|-...+. ...++... .+....++|||++|+|||+|+..+++.+.... .. ++|++ ..++...
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~-~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~ 174 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKN-PGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLND 174 (440)
T ss_pred cccCCchHHHHHHHHHHHhC-cCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 3457555433 23333321 12234589999999999999999999875543 33 33333 1233334
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----hhhHhhccCCCC-CCCcEEEEEeC-ChHH--------H
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----QLESLIGSLDRL-TPVSRIIITTR-NKQV--------L 170 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~ilitsr-~~~~--------~ 170 (362)
+...+... ....+........-+|++||++... .-+.+...+... ..+..+|+|+. .+.. .
T Consensus 175 ~~~~~~~~-----~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 175 LVDSMKEG-----KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred HHHHHhcc-----cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 43333211 2333444444445689999996321 112233222211 22346778774 3322 1
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
+.+.....+.+++.+.+....++...+...+ ....++.++.|++.+.|+.-.+.-+..
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 2233456889999999999999988874322 223468899999999998777654433
No 63
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.6e-07 Score=84.81 Aligned_cols=177 Identities=18% Similarity=0.234 Sum_probs=111.8
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc------CcccceeeecccccccCCCchHHH
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG------DFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
+.++|.+...+.|.+++..+ .-+++..++|+.|+|||++|..+++.+.. +++...|.. ... . ......
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~--~-~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INK--K-SIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccC--C-CCCHHH-
Confidence 35789899999999988632 33677899999999999999999997522 223222221 000 0 111222
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCChH-HHhh-cCCCc
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNKQ-VLRN-WGVSK 177 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~~-~~~~~ 177 (362)
.+.+...+.... ..+++-++|+|+++ +......++..+...+.++.+|+++.+.. +.+. .+...
T Consensus 78 ir~~~~~~~~~p------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 78 IRNIIEEVNKKP------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHHHHHHhcCc------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 222222211111 12345577778775 55667778877776677788887776542 2222 23457
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 178 IYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 178 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
.+.+.+++.++...++..... ...++.++.++..++|.|.-+..+
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999988876542 122455778899999998765433
No 64
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.87 E-value=2.3e-08 Score=85.86 Aligned_cols=185 Identities=15% Similarity=0.162 Sum_probs=116.6
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc--CcccceeeecccccccCCCchHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG--DFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
|..-+.++|.+...+-|...+.. ...+..+.|||+|+|||+.|..++..+.. -|.+.+--.|...... ......
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG-isvvr~- 107 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG-ISVVRE- 107 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc-ccchhh-
Confidence 34445699999999999998873 56788999999999999999999998643 3444443333332221 000000
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhh---CC---ce-EEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-HHH-
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRL---SR---MK-VLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK-QVL- 170 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l---~~---~~-~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~-~~~- 170 (362)
. ...+..+.... .+ .+ -+||||+++.. +.|..+...+...+...++++++..- .+.
T Consensus 108 --K-----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 108 --K-----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred --h-----------hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 0 01111111110 11 22 48999999844 56888887777666677776665432 221
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
+..+....++.++|..++.++-++..+...+.+ ..++..+.|++.++|--.-...
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 112344578899999999998888776443332 3467899999999986544333
No 65
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.86 E-value=1.4e-07 Score=92.09 Aligned_cols=195 Identities=15% Similarity=0.123 Sum_probs=114.4
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+...+.|..++..+ .-.+.++++|+.|+||||+|+.+++.+.......-.- +......++
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~---------~c~~c~~c~ 81 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR---------PCGTCEMCR 81 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CCccCHHHH
Confidence 334456999999999999988732 2356778999999999999999998864211000000 000111222
Q ss_pred HHHHHHhcC-----C---CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 104 KLLSNLLKD-----K---NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 104 ~l~~~~~~~-----~---~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
.+......+ . .....+..+.+.+ .+++-++|+|+++.. ...+.|+..+......+.+|+++.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 221111000 0 0011111122221 234568999999633 44666665555444556666655432
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
.+... .+....+.+.+++..+....+...+...+.. ..++.+..|+..++|.+..+.....
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33222 2345678899999999999998776443321 3457788999999999976544433
No 66
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.85 E-value=3.4e-07 Score=87.72 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=107.4
Q ss_pred CcccccchHH--HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-cc-ceeeecccccccCCCchHHHHHH
Q 037416 29 QLVGVESTVD--EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-EC-SCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 29 ~~vGR~~el~--~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
+++|-...+. ...+...........++|+|++|+|||+|+..+++.+...+ .. ++|+. ..++...
T Consensus 290 FvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~e 358 (617)
T PRK14086 290 FVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNE 358 (617)
T ss_pred hcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHH
Confidence 4456665533 23333332122234589999999999999999999876432 23 33333 1223333
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc---hh-hhHhhccCCCC-CCCcEEEEEeCCh---------HHH
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF---NQ-LESLIGSLDRL-TPVSRIIITTRNK---------QVL 170 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~-~~~l~~~~~~~-~~~~~ilitsr~~---------~~~ 170 (362)
+...+... ....+.+...+ .-+|+|||++.. .. -+.|...++.. ..+..||+||... .+.
T Consensus 359 l~~al~~~-----~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~ 432 (617)
T PRK14086 359 FINSIRDG-----KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLR 432 (617)
T ss_pred HHHHHHhc-----cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHH
Confidence 33322211 12234434333 347889999522 11 12333333222 2345688888642 233
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhh
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCF 231 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 231 (362)
+.+.....+.|.+.+.+....++..++...+. ...++.++.|++.+.++.-.|.-+...
T Consensus 433 SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l--~l~~eVi~yLa~r~~rnvR~LegaL~r 491 (617)
T PRK14086 433 NRFEWGLITDVQPPELETRIAILRKKAVQEQL--NAPPEVLEFIASRISRNIRELEGALIR 491 (617)
T ss_pred hhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 44456778999999999999999988744332 234788999999999887766544443
No 67
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.6e-07 Score=89.88 Aligned_cols=189 Identities=17% Similarity=0.088 Sum_probs=109.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|++...+.|.+++..+ .-.+.++++||.|+||||+|+.+++.+........- .|.. ...++
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~-~Cg~---------C~sCr 80 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGD-CCNS---------CSVCE 80 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CCcc---------cHHHH
Confidence 344456899999999999988632 235778999999999999999999986321100000 0000 00111
Q ss_pred HHHHHHhc-------CC-CCCCchHHHHHhh-----CCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEEeC-Ch
Q 037416 104 KLLSNLLK-------DK-NVIPYIDLNFRRL-----SRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIITTR-NK 167 (362)
Q Consensus 104 ~l~~~~~~-------~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilitsr-~~ 167 (362)
.+...... .. .....+..+.... .++.-++|+|+++. ......++..+...+..+.+|+++. ..
T Consensus 81 ~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 11000000 00 0011111111111 12344799999963 3445556555544444555555553 33
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
.+... .+....+++.+++.++....+...+...+. ...++.+..+++.++|.+.-+
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDG 217 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 33322 344568999999999999999887643321 133567889999999988644
No 68
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=3.2e-07 Score=84.79 Aligned_cols=183 Identities=15% Similarity=0.207 Sum_probs=109.6
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC--------cccceeeecccccccCC
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD--------FECSCFLENVREESQRP 95 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 95 (362)
|..-+.++|.+...+.+.+++..+ .-++.+.++|++|+|||+++..+++.+... +...++-. ... . .
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~-~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-S-N 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-c-C
Confidence 444566899999999999998732 235688999999999999999998876431 11111111 000 0 1
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC-ChHHHhh
Q 037416 96 GGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR-NKQVLRN 172 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr-~~~~~~~ 172 (362)
.....+ +.+....... -..+++-++++|+++.. ..+..++..+......+.+|+++. ...+.+.
T Consensus 88 ~~~~~i-~~l~~~~~~~------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 88 NSVDDI-RNLIDQVRIP------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred CCHHHH-HHHHHHHhhc------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111111 1111111100 01234568999999633 335566554443344455555553 2222222
Q ss_pred -cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 173 -WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 173 -~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
.+....+++++++.++...++...+...+. ...++.++.+++.++|.+..+.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHH
Confidence 234457899999999999999887644332 1346789999999999877553
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.83 E-value=4.3e-08 Score=77.79 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 31 VGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
+||+.++..+...+. ....+.+.|+|++|+|||++++.+++.+......++++
T Consensus 1 ~~~~~~~~~i~~~~~--~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 1 VGQEEAIEALREALE--LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CchHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 478888999988876 23466799999999999999999999875432333334
No 70
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.83 E-value=1.5e-07 Score=88.07 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=105.6
Q ss_pred CcccccchHHH--HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-c-cceeeecccccccCCCchHHHHHH
Q 037416 29 QLVGVESTVDE--IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-E-CSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 29 ~~vGR~~el~~--l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
.++|.+..+.. ...+..........++|+|++|+|||+|++.+++.+.... . .++|+. ..++...
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~ 180 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTND 180 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHH
Confidence 35676665332 2222222222245689999999999999999999876542 2 233333 1122333
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----hhhHhhccCCCC-CCCcEEEEEeCC-hH--------HH
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----QLESLIGSLDRL-TPVSRIIITTRN-KQ--------VL 170 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~ilitsr~-~~--------~~ 170 (362)
+...+... ....+...+.+ .-+|+|||++... ..+.+...+... ..+..+++|+.. +. +.
T Consensus 181 ~~~~~~~~-----~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 181 FVNALRNN-----KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HHHHHHcC-----CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 33332221 23334444432 3488999996322 122233332221 234457777753 21 12
Q ss_pred hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhh
Q 037416 171 RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCF 231 (362)
Q Consensus 171 ~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 231 (362)
+.+.....+.+++.+.++...++..++...+ ....++.++.|++.+.|+.-.+..+...
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l~~ 313 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGALNR 313 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 2233445789999999999999998875432 2234688999999999988866544433
No 71
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.82 E-value=7.1e-08 Score=96.63 Aligned_cols=180 Identities=13% Similarity=0.110 Sum_probs=101.3
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCC
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPG 96 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 96 (362)
.|..-++++||+.++.++.+.|... ...-++++|++|+|||++++.+++++.... +..+|..+....
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l----- 249 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL----- 249 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH-----
Confidence 3445567999999999999988632 344578999999999999999999874321 233443321111
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhh-CCceEEEEEeCCCCc-----------hhhhHhhccCCCCCCCcEEEEEe
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRL-SRMKVLIVFDDVTCF-----------NQLESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~ilits 164 (362)
. ............+..+.+.+ ...+.+|++|+++.. +....+.+.+. ....++|-+|
T Consensus 250 -----~----a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaT 318 (731)
T TIGR02639 250 -----L----AGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGST 318 (731)
T ss_pred -----h----hhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEec
Confidence 0 00000001111222222222 235789999999522 11223333333 2234555555
Q ss_pred CChHHHhh-------cCCCceEEcCCCCHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHcCC
Q 037416 165 RNKQVLRN-------WGVSKIYEMQALEYHHALELFCRHAFK--QNHPDVGYEELSSKAMNYAQG 220 (362)
Q Consensus 165 r~~~~~~~-------~~~~~~~~l~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~G 220 (362)
..+++.+. ......+.+++++.++..+++...... ........++....++..++.
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 44322111 123457999999999999999965422 112223445666666666643
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=4.1e-07 Score=87.69 Aligned_cols=188 Identities=16% Similarity=0.095 Sum_probs=111.7
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+...+.|..++..+ .-.+.++++|+.|+||||+|+.++..+...... ..-.|..+ .-++
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pCg~C---------~~C~ 77 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGP-TATPCGVC---------ESCV 77 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCCccccc---------HHHH
Confidence 334456899999999999998732 235667899999999999999999876421100 00000000 0011
Q ss_pred HHHHH---------HhcCC-CCCCchHHHHHh-----hCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC
Q 037416 104 KLLSN---------LLKDK-NVIPYIDLNFRR-----LSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 104 ~l~~~---------~~~~~-~~~~~~~~~~~~-----l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
.+... +.... .....+..+.+. ..++.-++|+|+++ +......|+..+..-...+.+|+++.+
T Consensus 78 ~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred HhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 11000 00000 011111112111 12345689999996 444566666666655566666665543
Q ss_pred -hHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 167 -KQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 167 -~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
..+... .+....+.+.+++.++..+++...+...+. ...++.+..|+..++|.+.-
T Consensus 158 ~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 158 PEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRD 215 (584)
T ss_pred hHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 333332 344678999999999999999877644332 23456788899999998864
No 73
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.6e-07 Score=90.04 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=109.7
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
..-+.++|.+...+.|..++..+ .-.+.++++|++|+||||+|+.+++.+....... .-.|..+ .-+..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pcg~C---------~~C~~ 81 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-ATPCGVC---------SACLE 81 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCC---------HHHHH
Confidence 34456899999999999998732 2256678999999999999999999863211000 0000000 00000
Q ss_pred HHHH-------HhcC-CCCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-H
Q 037416 105 LLSN-------LLKD-KNVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK-Q 168 (362)
Q Consensus 105 l~~~-------~~~~-~~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~-~ 168 (362)
+... +... ......+..+.... .+++-++|+|+++.. .....++..+......+.+|++|.+. .
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 0000 0000 00011111122211 245669999999744 34566666665545566666666443 2
Q ss_pred HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 169 VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 169 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
+... .+....+++.+++.++..+.+...+...+. ...+..+..|+..++|.+.-+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 2211 223467889999999999999877643332 234567888999999988644
No 74
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.6e-06 Score=82.33 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=111.9
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC---c--ccceeeeccccccc-CCCc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD---F--ECSCFLENVREESQ-RPGG 97 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---~--~~~~~~~~~~~~~~-~~~~ 97 (362)
|..-..++|.+.....|..++..+ .-.++++++|+.|+||||+|+.++..+... . ++.. ..++..... ...+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCc
Confidence 334456899999999999999732 235667899999999999999999986421 0 0000 000000000 0000
Q ss_pred hHHHHHHHHHHHhcCC-CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEe-CChH
Q 037416 98 LACLRQKLLSNLLKDK-NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITT-RNKQ 168 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilits-r~~~ 168 (362)
+.. +.... .....+..+.+.. .+++-++|+|+++.. .....++..+........+|+++ +...
T Consensus 90 ~~e--------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~k 161 (486)
T PRK14953 90 LIE--------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161 (486)
T ss_pred EEE--------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHH
Confidence 000 00000 0111111222222 245669999999633 34556665555444455555544 3333
Q ss_pred HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 169 VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 169 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
+... .+....+.+.+++.++...++...+...+. ...++.++.|++.++|++..+....
T Consensus 162 l~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 234568999999999999999887644332 2345778899999999887654444
No 75
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=2.9e-07 Score=92.15 Aligned_cols=187 Identities=11% Similarity=0.032 Sum_probs=111.7
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKL 105 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (362)
.-+.+||.+...+.|..++..+ .-.+.++++|+.|+||||+|+.+++.+........ -.|..+ .-++.+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-~pCg~C---------~sC~~~ 81 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-TPCGEC---------DSCVAL 81 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-CCCccc---------HHHHHH
Confidence 3356899999999999998732 23566899999999999999999998642110000 000000 000000
Q ss_pred HHH---------HhcCC-CCCCchHHHHH-----hhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 106 LSN---------LLKDK-NVIPYIDLNFR-----RLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 106 ~~~---------~~~~~-~~~~~~~~~~~-----~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
... +.... .....+..+.. -..++.-++|||+++ +......|+..+..-...+.+|+++.+.
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 000 00000 01111111211 123455689999997 4445666666666556667767666433
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
.+... .+....+++.+++.++..+++...+...+. ...++.+..|+..++|.+..+
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 34332 345678999999999999999887644332 234567888999999988544
No 76
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.78 E-value=3.8e-08 Score=99.44 Aligned_cols=184 Identities=12% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCC
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPG 96 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 96 (362)
.|..-++++||+.++.++.+.|.. ....-++++|++|+|||+++..+++++.... +..+|............
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r--~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR--RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc--CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 345567899999999999998863 3344567999999999999999999875431 12222221111100000
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhh--CCceEEEEEeCCCCch-------hhh---HhhccCCCCCCCcEEEEEe
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRL--SRMKVLIVFDDVTCFN-------QLE---SLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~-------~~~---~l~~~~~~~~~~~~ilits 164 (362)
...++. ..+..+.... .+.++++++|+++... ..+ .+.+.+. ....++|-+|
T Consensus 260 ~~ge~e--------------~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaT 323 (852)
T TIGR03345 260 VKGEFE--------------NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAAT 323 (852)
T ss_pred cchHHH--------------HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEec
Confidence 000111 1111222211 2468999999994321 112 2333333 2334566666
Q ss_pred CChHHHhh-------cCCCceEEcCCCCHHHHHHHHHHhhhc--CCCCCCChHHHHHHHHHHcCCCchH
Q 037416 165 RNKQVLRN-------WGVSKIYEMQALEYHHALELFCRHAFK--QNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 165 r~~~~~~~-------~~~~~~~~l~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
..+++.+. ......+.+++++.+++.+++...... ....-...++....+++.+.++...
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~ 392 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPG 392 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccccc
Confidence 54333111 124468999999999999997644321 1122223456677777777655443
No 77
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.78 E-value=1.9e-07 Score=86.57 Aligned_cols=177 Identities=19% Similarity=0.239 Sum_probs=100.6
Q ss_pred CCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccccc
Q 037416 25 DNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQ 93 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (362)
...+.+.|++.+++++.+.+.. +-..++.|+|+||+|+|||++|+.+++.+...|- .+. .
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~----- 198 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-G----- 198 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-h-----
Confidence 3344578999999999886632 1133567999999999999999999998653321 111 0
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch------------h----hhHhhccCCCC--
Q 037416 94 RPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN------------Q----LESLIGSLDRL-- 154 (362)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~------------~----~~~l~~~~~~~-- 154 (362)
..+.... ... ....+.. +.......+.+|+||+++... . +..++..+...
T Consensus 199 -----~~l~~~~----~g~--~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -----SELVQKF----IGE--GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -----HHHhHhh----ccc--hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 0111110 000 0011111 222223467899999996431 1 12222222211
Q ss_pred CCCcEEEEEeCChHHHhh-c----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 155 TPVSRIIITTRNKQVLRN-W----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 155 ~~~~~ilitsr~~~~~~~-~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
..+..||.||........ + .....+.+++.+.++..+++..++........ .....++..+.|.--+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~sga 339 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGASGA 339 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCCHH
Confidence 234567767764422221 1 23457999999999999999987644333221 2367788888876543
No 78
>PTZ00202 tuzin; Provisional
Probab=98.77 E-value=5.4e-08 Score=88.38 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=96.7
Q ss_pred CCCCCCCCcccccchHHHHHHHhccCC-CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGVES-KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
.-|+.+..|+||+.|+..|.+.+...+ ..++++.|+|++|+|||||++.+..... ...++.+. .+..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTED 324 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHH
Confidence 567778899999999999999997533 2366899999999999999999997654 23444322 24578
Q ss_pred HHHHHHHHHhcCCCCC--CchHH----HHH-hhC-CceEEEEEeCC--CCchh-hhHhhccCCCCCCCcEEEEEeCChHH
Q 037416 101 LRQKLLSNLLKDKNVI--PYIDL----NFR-RLS-RMKVLIVFDDV--TCFNQ-LESLIGSLDRLTPVSRIIITTRNKQV 169 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~--~~~~~----~~~-~l~-~~~~llvlDd~--~~~~~-~~~l~~~~~~~~~~~~ilitsr~~~~ 169 (362)
+++.++..++...... ..+.. +.. ... ++..+||+-=- .+..- ..+... +.--..-|+|++----+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhc
Confidence 8888888887533211 12222 222 122 45555554322 12211 111111 1111234666653321111
Q ss_pred Hhh---cCCCceEEcCCCCHHHHHHHHHHhh
Q 037416 170 LRN---WGVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 170 ~~~---~~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
... ......+.+++|+.+++.++.+...
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 000 1122357789999999999887654
No 79
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.2e-07 Score=88.07 Aligned_cols=193 Identities=16% Similarity=0.148 Sum_probs=115.5
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCccc----ceeeecccccccCCCchHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFEC----SCFLENVREESQRPGGLAC 100 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 100 (362)
..-+.++|.+...+.|..++..+ .-.+.++++|+.|+||||+|+.+++.+...... ..+-.|. .-.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg---------~c~ 90 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG---------VGE 90 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc---------ccH
Confidence 44456899999999999998732 235678999999999999999999986422110 0000000 001
Q ss_pred HHHHHHHHHhc-------CC-CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC
Q 037416 101 LRQKLLSNLLK-------DK-NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 101 ~~~~l~~~~~~-------~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr 165 (362)
-++.+...... .. .....+..+.+.. .++.-++|+|+++.. .....++..+..-...+.+|+++.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 11111110000 00 0111122222222 234558999999633 446666666655556677766553
Q ss_pred -ChHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 166 -NKQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 166 -~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
...+... .+....+.+.+++.++...++...+...+. ...++.++.|+..++|.+.-+....
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333322 234568999999999999999887744332 2345788999999999997764433
No 80
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.76 E-value=2.3e-08 Score=78.05 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=68.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC-----cccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCch----H
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD-----FECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYI----D 120 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~ 120 (362)
+.+.++|+|++|+|||+++..+++.+... ...++|+.+.. ..+...+.+.+...+.......... +
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS-----SRTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH-----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC-----CCCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 46689999999999999999999987542 23444555222 2367888888888887766542222 2
Q ss_pred HHHHhhCCc-eEEEEEeCCCCc---hhhhHhhccCCCCCCCcEEEEEeCC
Q 037416 121 LNFRRLSRM-KVLIVFDDVTCF---NQLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 121 ~~~~~l~~~-~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
.+.+.+... ..+||+|+++.. ..++.+..... ..+.+++++.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 355555443 469999999654 23444444334 566788888765
No 81
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.75 E-value=2.2e-06 Score=78.07 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=113.2
Q ss_pred ceEEEEEeCCCCc-----------hhhhHhhccCCCCCCCcEEEEEeCChHHHhh----c--CCCceEEcCCCCHHHHHH
Q 037416 129 MKVLIVFDDVTCF-----------NQLESLIGSLDRLTPVSRIIITTRNKQVLRN----W--GVSKIYEMQALEYHHALE 191 (362)
Q Consensus 129 ~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~----~--~~~~~~~l~~l~~~e~~~ 191 (362)
.+-+||+||+... .+|...+.. .+-.+||++|.+...... + .....+.|.-.+++.+.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 4679999999311 123333322 344578888866533332 2 245678999999999999
Q ss_pred HHHHhhhcCCCC------------------CCChHHHHHHHHHHcCCCchHHHHHhhhhcCC--CHHHHHHHHHHHhccC
Q 037416 192 LFCRHAFKQNHP------------------DVGYEELSSKAMNYAQGVPLALNVLGCFLYER--EKEVWESAINKLQRIL 251 (362)
Q Consensus 192 ll~~~~~~~~~~------------------~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~--~~~~~~~~~~~l~~~~ 251 (362)
++..++...... ........+.+++..||--.-|..+++.++.. +...+....++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q----- 298 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ----- 298 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH-----
Confidence 999988543110 02355678889999999999999999999873 23333333333
Q ss_pred CccHHHHHhcccc-------CCChhhhhhhhhhhccCCC--ccHHHHHHHHHHcCC--CchhhHHHHhhccceEEcc-CC
Q 037416 252 HPSILEVLKISYD-------GLDNKEKNIFLDVACFFRG--EHVNLVMKFLNASGF--YPEIGIRVLVDKSLIAIDS-HK 319 (362)
Q Consensus 252 ~~~~~~~~~~~~~-------~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~--~~~~~l~~L~~~~Li~~~~-~~ 319 (362)
++..+...-+. ..+-...+.+..+-.+... ++...+.. .+-| ..+..|..|++..||+... +|
T Consensus 299 --sa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~---~~lFk~~~E~~L~aLe~aeLItv~~~~G 373 (431)
T PF10443_consen 299 --SASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLL---SPLFKGNDETALRALEQAELITVTTDNG 373 (431)
T ss_pred --HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHc---ccccCCCChHHHHHHHHCCcEEEEecCC
Confidence 22222222222 2222334555555544333 45443222 1222 2355899999999999755 44
Q ss_pred c---EEe-cHHHHHHHHHHHH
Q 037416 320 K---ITM-LDLLQELGREIVR 336 (362)
Q Consensus 320 ~---~~~-H~li~~~~~~~~~ 336 (362)
+ ++- -|+.|..-++++.
T Consensus 374 ~p~~I~pGkPvy~aAF~~L~~ 394 (431)
T PF10443_consen 374 RPSTIRPGKPVYRAAFKRLVN 394 (431)
T ss_pred cCCeeECCChhHHHHHHHHhh
Confidence 4 222 4566655555544
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=1.5e-06 Score=83.65 Aligned_cols=196 Identities=12% Similarity=0.073 Sum_probs=113.3
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+...+.|..++..+ .-.+.++++|+.|+||||+|+.+++.+....... .-.| ..-..++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-~~pC---------g~C~sC~ 80 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-GEPC---------NTCEQCR 80 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC-CCCC---------cccHHHH
Confidence 333456899999999999988632 2257888999999999999999999863211000 0000 0000111
Q ss_pred HHHHHHhc------C--CCCCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-
Q 037416 104 KLLSNLLK------D--KNVIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK- 167 (362)
Q Consensus 104 ~l~~~~~~------~--~~~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~- 167 (362)
.+...... . ......+..+.+. ..++.-++|+|+++.. .....|+..+..-.....+|+++...
T Consensus 81 ~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 11000000 0 0001111111111 2345669999999643 44566666555434555666655543
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc-hHHHHHhhhh
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP-LALNVLGCFL 232 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~~~~l 232 (362)
.+... .+....+++.+++.++..+.+...+...+. ...++.++.|++.++|.+ .+++.+...+
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33322 234467899999999999999876643321 234678899999999976 4666655433
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.74 E-value=9.5e-07 Score=84.01 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=113.6
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-ccc--ceeee-ccc-----------
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FEC--SCFLE-NVR----------- 89 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~--~~~~~-~~~----------- 89 (362)
..-+.++|.+...+.|..++..+ .-.++++++|+.|+|||++|+.+++.+... ... .+..+ .+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 44456999999999999998732 235677899999999999999999886321 100 00000 000
Q ss_pred ccccC-CCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC
Q 037416 90 EESQR-PGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 90 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
..... ......+. .+....... -..++.-++|+|+++ +.+....++..+..-+..+.+|+++.+
T Consensus 90 eldaas~~gId~IR-elie~~~~~------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 90 EMDAASNRGIDDIR-ELIEQTKYK------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred EeccccccCHHHHH-HHHHHHhhC------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 00000 00111111 111110000 011345689999996 334456666665554566777777765
Q ss_pred h-HHHh-hcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 167 K-QVLR-NWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 167 ~-~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
. .+.+ ..+....+++.+++.++....+...+...+. ...++.+..|+..++|.+.-+..+.
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 4 2221 1234568999999999999999877644332 2346788999999999996654443
No 84
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=1.6e-06 Score=81.77 Aligned_cols=192 Identities=15% Similarity=0.158 Sum_probs=109.5
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc---cc-ceee-eccccccc-CCCch
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF---EC-SCFL-ENVREESQ-RPGGL 98 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~-~~~~-~~~~~~~~-~~~~~ 98 (362)
..-+.++|.+...+.|..++..+ .-.+.++++|+.|+|||++|+.+++.+...- +. .+-. .++..... ...++
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 44466999999999999998632 2256788999999999999999999863210 00 0000 00000000 00000
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCC-hHHH
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRN-KQVL 170 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~-~~~~ 170 (362)
..+ .+........+..+.+. ..+.+-++|+|+++.. .....++..+......+.+|+++.. ..+.
T Consensus 93 ~~i-------~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 93 LEI-------DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred EEe-------eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 000 00000000111111111 1245678999999633 3455565555544456666666543 2232
Q ss_pred hh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 171 RN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 171 ~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
.. .+....+++.+++.++..+.+...+...+. ...++.++.|+..++|.+.-+.
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~ 220 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAE 220 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 234568999999999999999877643221 2346788999999999876543
No 85
>PRK06620 hypothetical protein; Validated
Probab=98.73 E-value=2.5e-07 Score=78.41 Aligned_cols=166 Identities=10% Similarity=0.008 Sum_probs=95.9
Q ss_pred CCCCcccccch--HHHHHHHhccCCCC--eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHH
Q 037416 26 NKNQLVGVEST--VDEIESLLGVESKG--VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 26 ~~~~~vGR~~e--l~~l~~~l~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
.++.++|.... ...+.++-...... .+.+.|||++|+|||+|++.+++.... .++. . .....
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~-----~--~~~~~-- 80 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK-----D--IFFNE-- 80 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEcc-----h--hhhch--
Confidence 34556776333 23344443211111 256899999999999999987775421 1221 0 00000
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchhhhHhhccCCCC-CCCcEEEEEeCCh-------HHHhhc
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLIGSLDRL-TPVSRIIITTRNK-------QVLRNW 173 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~-~~~~~ilitsr~~-------~~~~~~ 173 (362)
. .. ...-++++||++..+. ..+...++.. ..+..+++|++.+ ++.+.+
T Consensus 81 --~--------------------~~-~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 81 --E--------------------IL-EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred --h--------------------HH-hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 0 00 1224788999974432 1222222211 2345788888743 233334
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhh
Q 037416 174 GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCF 231 (362)
Q Consensus 174 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~ 231 (362)
.....+++++++.++...++.+.+...+ ....++..+.|++.+.|..-.+..+...
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~~~--l~l~~ev~~~L~~~~~~d~r~l~~~l~~ 192 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSISS--VTISRQIIDFLLVNLPREYSKIIEILEN 192 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 5566899999999998888887764322 1234688999999998877766554443
No 86
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=5.7e-07 Score=87.89 Aligned_cols=193 Identities=11% Similarity=0.089 Sum_probs=111.4
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc--cCCCchHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES--QRPGGLACL 101 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 101 (362)
|..-..++|.+...+.|..++..+ .-.++++++||.|+|||++|+.++..+........+-.|..+.. ....+...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 444456899999999999998732 23677889999999999999999987532111000000000000 00000000
Q ss_pred HHHHHHHHhcCC-CCCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEe-CChHHHhh
Q 037416 102 RQKLLSNLLKDK-NVIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITT-RNKQVLRN 172 (362)
Q Consensus 102 ~~~l~~~~~~~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilits-r~~~~~~~ 172 (362)
+.... .....+..+.+.+ .++.-++|+|+++ .......++..+..-+..+.+|+++ ....+...
T Consensus 92 -------idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 92 -------MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred -------EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000 0011112222222 2455699999996 3345666666555444555555444 44444332
Q ss_pred -cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 173 -WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 173 -~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
.+....+.+.+++.++..+.+...+...+. ...++.++.++..++|.+.-+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 344578999999999999999876543321 22356688999999998765433
No 87
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.71 E-value=3.6e-07 Score=82.77 Aligned_cols=178 Identities=11% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+...+.+.+++.. +..+.+++++|++|+|||+++..+++.+... ...+. ... . . .+..+
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~-~~~----~-~-~~~i~ 85 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN-GSD----C-R-IDFVR 85 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec-cCc----c-c-HHHHH
Confidence 44556789999999999999873 2235677789999999999999999876322 12222 111 1 1 11111
Q ss_pred HHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc---hhhhHhhccCCCCCCCcEEEEEeCChH-HHhh-cCCCce
Q 037416 104 KLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF---NQLESLIGSLDRLTPVSRIIITTRNKQ-VLRN-WGVSKI 178 (362)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~~-~~~~~~ 178 (362)
..+....... ...+.+-++++|+++.. .....+...+.....++.+|+|+.... +.+. .+....
T Consensus 86 ~~l~~~~~~~-----------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 86 NRLTRFASTV-----------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHHHHHHhh-----------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1111111100 01134568999999644 222333333443456678888886432 1111 133456
Q ss_pred EEcCCCCHHHHHHHHHHhhhcC-----CCCCCChHHHHHHHHHHcCCCch
Q 037416 179 YEMQALEYHHALELFCRHAFKQ-----NHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 179 ~~l~~l~~~e~~~ll~~~~~~~-----~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
+.++..+.++..+++....... .......++.+..+++..+|.-.
T Consensus 155 i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHH
Confidence 7888888888776655322110 01111234455666666665443
No 88
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.69 E-value=8.5e-07 Score=80.96 Aligned_cols=183 Identities=14% Similarity=0.118 Sum_probs=107.6
Q ss_pred CCcccccchHHHH-HHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHH
Q 037416 28 NQLVGVESTVDEI-ESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKL 105 (362)
Q Consensus 28 ~~~vGR~~el~~l-~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (362)
..++|-...+..- ...+.. .+.....++|||+.|.|||+|++.+++..........++. .+...+...+
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~ 158 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDF 158 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHH
Confidence 3456666555542 222322 2234778999999999999999999998766555333332 1122333333
Q ss_pred HHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc----hhhhHhhccCCCC-CCCcEEEEEeCCh---------HHHh
Q 037416 106 LSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF----NQLESLIGSLDRL-TPVSRIIITTRNK---------QVLR 171 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----~~~~~l~~~~~~~-~~~~~ilitsr~~---------~~~~ 171 (362)
...+.. ...+.+++.. .--++++||++.. ..-+.+...++.. ..+..|++||+.. .+.+
T Consensus 159 v~a~~~-----~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S 231 (408)
T COG0593 159 VKALRD-----NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS 231 (408)
T ss_pred HHHHHh-----hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH
Confidence 333222 2233444444 2338899999422 2234444444333 2334788888532 3444
Q ss_pred hcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 172 NWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 172 ~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
.+.....+.+.+.+.+....++...+...+.. ..++....|++....+---+..+
T Consensus 232 R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~--i~~ev~~~la~~~~~nvReLega 286 (408)
T COG0593 232 RLEWGLVVEIEPPDDETRLAILRKKAEDRGIE--IPDEVLEFLAKRLDRNVRELEGA 286 (408)
T ss_pred HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhccHHHHHHH
Confidence 45677899999999999999999865333211 22466777777766655444333
No 89
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.8e-06 Score=83.61 Aligned_cols=189 Identities=14% Similarity=0.087 Sum_probs=111.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
|..-+.++|.+...+.|..++..+ .-.+.++++|+.|+|||++|+.++..+.... .... . +. .-..+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~--p-C~--------~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE--P-CN--------ECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--C-CC--------ccHHH
Confidence 444567999999999999998742 2366788999999999999999998753211 0000 0 00 00011
Q ss_pred HHHHHHHhcC-------C-CCCCchHHHHHh-----hCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC-C
Q 037416 103 QKLLSNLLKD-------K-NVIPYIDLNFRR-----LSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR-N 166 (362)
Q Consensus 103 ~~l~~~~~~~-------~-~~~~~~~~~~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr-~ 166 (362)
+.+......+ . .....+..+... ..++.-++|+|+++.. .....++..+..-...+.+|+++. .
T Consensus 80 ~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 80 KAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1110000000 0 011111122222 1245668999999744 446666655554445555555443 3
Q ss_pred hHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 167 KQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 167 ~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
..+... .+....+.+.+++.++..+.+...+...+.. ..++.++.|+..++|.+.-+.
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 333322 2345678899999999999998876443322 235678889999999887543
No 90
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=2.3e-06 Score=82.53 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=114.1
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-ccc--ce-eeeccccccc-CCCch
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FEC--SC-FLENVREESQ-RPGGL 98 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~--~~-~~~~~~~~~~-~~~~~ 98 (362)
|..-+.++|.+...+.|..++..+ .-.+.++++|+.|+|||++|+.+++.+... ... .+ .+..+..... ...++
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 444456899999999999999732 236678999999999999999999986421 100 00 0000000000 00000
Q ss_pred HHHHHHHHHHHhcCC-CCCCchHHHHHh-----hCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HH
Q 037416 99 ACLRQKLLSNLLKDK-NVIPYIDLNFRR-----LSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QV 169 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~-~~~~~~~~~~~~-----l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~ 169 (362)
.. +.... .....+..+.+. ..++.-++|+|+++ +......++..+..-+..+.+|+++... .+
T Consensus 91 ~~--------idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 91 IE--------IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred EE--------ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 00 00000 001111111111 12455689999996 4445667776666555666666655433 33
Q ss_pred Hhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 170 LRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 170 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
... .+....+++.+++.++..+++...+...+. ...++.+..|+..++|.+..+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 322 234567899999999999999877644332 234678888999999998755433
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.68 E-value=4.5e-07 Score=79.61 Aligned_cols=133 Identities=13% Similarity=0.148 Sum_probs=70.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCc--ccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDF--ECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLS 127 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 127 (362)
....++++||+|+|||++|+.++..+.... ....++. +.. .++.... ..+ .......+....
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~--------~~l~~~~----~g~--~~~~~~~~~~~a- 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER--------ADLVGEY----IGH--TAQKTREVIKKA- 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--------HHhhhhh----ccc--hHHHHHHHHHhc-
Confidence 356688999999999999999998764221 1111111 000 1111110 000 011111122222
Q ss_pred CceEEEEEeCCCCc----------hhhhHhhccCCCCCCCcEEEEEeCChHHHh------h-cC-CCceEEcCCCCHHHH
Q 037416 128 RMKVLIVFDDVTCF----------NQLESLIGSLDRLTPVSRIIITTRNKQVLR------N-WG-VSKIYEMQALEYHHA 189 (362)
Q Consensus 128 ~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~ilitsr~~~~~~------~-~~-~~~~~~l~~l~~~e~ 189 (362)
...+|++|+++.. +..+.++..+........+++++....+.. . .+ ....+.+++++.++.
T Consensus 105 -~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 105 -LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred -cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 2358999999642 234555555444344445555554332210 1 11 235689999999999
Q ss_pred HHHHHHhhhc
Q 037416 190 LELFCRHAFK 199 (362)
Q Consensus 190 ~~ll~~~~~~ 199 (362)
.+++...+..
T Consensus 184 ~~Il~~~~~~ 193 (261)
T TIGR02881 184 MEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 92
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.1e-06 Score=85.49 Aligned_cols=196 Identities=13% Similarity=0.145 Sum_probs=112.8
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC--cccceeeecccccccCCCchHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD--FECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
|..-+.++|.+.....|.+++..+ .-.+.++++|+.|+||||+|..+++.+.-. .+...|...... +-..-.-
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~s 86 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECES 86 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCHH
Confidence 344466999999999999988622 235678899999999999999999986321 110111100000 0000011
Q ss_pred HHHHHHHHhcC-----C---CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC-
Q 037416 102 RQKLLSNLLKD-----K---NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR- 165 (362)
Q Consensus 102 ~~~l~~~~~~~-----~---~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr- 165 (362)
++.+......+ . .....+..+.+.+ .+.+-++|+|+++.. .....|+..+..-...+.+|+++.
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 11111100000 0 0011122222222 234558899999644 446666666655445555555553
Q ss_pred ChHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 166 NKQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 166 ~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
...+... .+....+++.+++.++...++...+...+. ...++.++.+++.++|...-+.
T Consensus 167 ~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr~al 226 (620)
T PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMRDAQ 226 (620)
T ss_pred hhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHH
Confidence 3344332 345678999999999999999876643221 1346788999999999777543
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=4.4e-06 Score=81.61 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=111.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|.+...+.|..++..+ .-.+.++++|+.|+|||++|+.++..+.......-.-.|..+ .-++
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C---------~sC~ 82 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC---------ESCV 82 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc---------hHHH
Confidence 344466999999999999998732 236678999999999999999998876311000000000000 0000
Q ss_pred HHHHH-------HhcCC-CCCCchHHHHHhh-----CCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEEe-CCh
Q 037416 104 KLLSN-------LLKDK-NVIPYIDLNFRRL-----SRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIITT-RNK 167 (362)
Q Consensus 104 ~l~~~-------~~~~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilits-r~~ 167 (362)
.+... +.... .....+..+...+ .+..-++|+|+++. ......|+..+..-...+.+|+++ ...
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 00000 00000 0011111121111 13445889999964 345666766665555566666555 333
Q ss_pred HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 168 QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 168 ~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
.+.+. .+....+++.+++.++...++...+...+.. ..++.++.|++.++|...-+.
T Consensus 163 kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred hchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 33332 3455789999999999999998776443322 335678999999999887553
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.67 E-value=9.9e-07 Score=82.85 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=101.8
Q ss_pred CCcccccchHH--HHHHHhccC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHH
Q 037416 28 NQLVGVESTVD--EIESLLGVE----SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 28 ~~~vGR~~el~--~l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
.+++|-...+. ...++.... +.....++|+|++|+|||+|++.+++.+......++++. ...+
T Consensus 112 nFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f 180 (445)
T PRK12422 112 NFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELF 180 (445)
T ss_pred ceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHH
Confidence 34557766654 333333211 112356889999999999999999998765433344443 1122
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----hhhHhhccCCCC-CCCcEEEEEeCC-h--------
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----QLESLIGSLDRL-TPVSRIIITTRN-K-------- 167 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~ilitsr~-~-------- 167 (362)
...+...+.. .....+..... ..-++++||+.... ..+.+...++.. ..+..+|+||.. +
T Consensus 181 ~~~~~~~l~~-----~~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~ 254 (445)
T PRK12422 181 TEHLVSAIRS-----GEMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEE 254 (445)
T ss_pred HHHHHHHHhc-----chHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHH
Confidence 2233222221 11223343333 34488889994321 122333222211 134467777753 2
Q ss_pred HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 168 QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 168 ~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
.+.+.+.....+.+.+++.++...++...+...+ ....++.++.|++.+.|+--.+
T Consensus 255 rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~evl~~la~~~~~dir~L 310 (445)
T PRK12422 255 RLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS--IRIEETALDFLIEALSSNVKSL 310 (445)
T ss_pred HHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHH
Confidence 2222234457899999999999999988774432 2344678888888888776433
No 95
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.66 E-value=4.3e-07 Score=92.17 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=96.6
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeeecccccccCCCchHH
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
-++++||+++++++.+.|... ...-++++|++|+|||+++..++.++... .+..+|..+......
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a------- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA------- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-------
Confidence 356999999999999998732 34456799999999999999999986432 123444432211100
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHh-hCCceEEEEEeCCCCch----------hhhHhhccCCCCCCCcEEEEEeCChHH
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRR-LSRMKVLIVFDDVTCFN----------QLESLIGSLDRLTPVSRIIITTRNKQV 169 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~~----------~~~~l~~~~~~~~~~~~ilitsr~~~~ 169 (362)
...........+..+.+. ...+++++++|+++... .-..+.+.+. ....++|.+|..+++
T Consensus 249 -------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey 319 (821)
T CHL00095 249 -------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEY 319 (821)
T ss_pred -------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHH
Confidence 000000001112222222 23467899999994111 1122222322 233556666665543
Q ss_pred Hhh-------cCCCceEEcCCCCHHHHHHHHHHhhh--cCCCCCCChHHHHHHHHHHcCC
Q 037416 170 LRN-------WGVSKIYEMQALEYHHALELFCRHAF--KQNHPDVGYEELSSKAMNYAQG 220 (362)
Q Consensus 170 ~~~-------~~~~~~~~l~~l~~~e~~~ll~~~~~--~~~~~~~~~~~~~~~i~~~~~G 220 (362)
... ......+.+++.+.++...++..... .........++....+.+.+++
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 221 12345788899999998888875321 1111111334556666666653
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.2e-06 Score=85.57 Aligned_cols=195 Identities=16% Similarity=0.126 Sum_probs=113.4
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
|..-..++|.+...+.|..++..+. -.+.++++|+.|+|||++|+.+++.+.... .....-. ...-..+
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~---------Cg~C~~C 81 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP---------CGKCELC 81 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC---------CcccHHH
Confidence 3444568999999999999987422 246789999999999999999999864321 1000000 0001122
Q ss_pred HHHHHHHhc-----CC---CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 103 QKLLSNLLK-----DK---NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 103 ~~l~~~~~~-----~~---~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
+.+...... +. .....+..+...+ .++.-++|+|+++.. .....++..+..-...+.+|+++.+.
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 222111110 00 0111122222222 234568999999743 44666666655444555555555433
Q ss_pred -HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 168 -QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 168 -~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
.+... .+....+.+.+++.++....+...+...+.. ..++.+..|++.++|.+..+..+..
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33222 2345678899999999998887765432211 2346788999999998876544433
No 97
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.62 E-value=2.1e-06 Score=79.66 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=137.1
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHh
Q 037416 31 VGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLL 110 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (362)
..|...+.++.+.+. ..+.+++|+||.++||||+++.+.....+. .+++........ ...+.+....+..
T Consensus 20 ~~~~~~~~~l~~~~~---~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~-~~~l~d~~~~~~~--- 89 (398)
T COG1373 20 IERRKLLPRLIKKLD---LRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD-RIELLDLLRAYIE--- 89 (398)
T ss_pred hhHHhhhHHHHhhcc---cCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc-hhhHHHHHHHHHH---
Confidence 344455666666654 223399999999999999997777766544 555542222111 1122222222211
Q ss_pred cCCCCCCchHHHHHhhCCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhh------cCCCceEEcCCC
Q 037416 111 KDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN------WGVSKIYEMQAL 184 (362)
Q Consensus 111 ~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~------~~~~~~~~l~~l 184 (362)
....++..++||+|.....|......+.+.++. ++++|+.+..+... .+....+.+.||
T Consensus 90 --------------~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 90 --------------LKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred --------------hhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111157899999999999999988877766665 78888876533322 234567999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCHHHHHHHHHHHhccCCccHHHHHhccc-
Q 037416 185 EYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISY- 263 (362)
Q Consensus 185 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 263 (362)
+..|-..+.-... .+. ..+. .-.-+-.+||.|.++..-...-. .....+.. . ..++....-
T Consensus 155 SF~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~~---~---~~Di~~~~~~ 216 (398)
T COG1373 155 SFREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKADLSEKK------LKEYLDTI---L---KRDIIERGKI 216 (398)
T ss_pred CHHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhCcchhhH------HHHHHHHH---H---HHHHHHHcCc
Confidence 9998876643000 000 1111 22344567999998854332211 11111110 0 011111111
Q ss_pred cCCChhhhhhhhhhhc-cCCCccHHHHHHHHH-HcCCCchhhHHHHhhccceE
Q 037416 264 DGLDNKEKNIFLDVAC-FFRGEHVNLVMKFLN-ASGFYPEIGIRVLVDKSLIA 314 (362)
Q Consensus 264 ~~L~~~~~~~l~~ls~-~~~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~~Li~ 314 (362)
... ...++++.+++- .+..++.+.+.+.+. -+.......++.|++.-++.
T Consensus 217 ~~~-~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~ 268 (398)
T COG1373 217 ENA-DLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLF 268 (398)
T ss_pred ccH-HHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheE
Confidence 111 456667666654 467799999999884 44444556777777777776
No 98
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.60 E-value=1.2e-06 Score=89.31 Aligned_cols=156 Identities=11% Similarity=0.089 Sum_probs=88.7
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCC
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPG 96 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 96 (362)
.+..-++++||+.++.++.+.|.. .....++++|++|+|||+++..++.++.... ...+|.....
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------- 238 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------- 238 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH-------
Confidence 344556799999999999998863 3344567899999999999999999875431 2233332111
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhh--CCceEEEEEeCCCCch----------hhhHhhccCCCCCCCcEEEEEe
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRL--SRMKVLIVFDDVTCFN----------QLESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~----------~~~~l~~~~~~~~~~~~ilits 164 (362)
.+. ............+..+...+ .+++.+|++|+++... ....+.+.+. ....++|.+|
T Consensus 239 ---~l~----a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~IgaT 309 (852)
T TIGR03346 239 ---ALI----AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIGAT 309 (852)
T ss_pred ---HHh----hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEEeC
Confidence 110 00000001111222222222 2468999999995332 1222223222 2234555555
Q ss_pred CChHHHhh-------cCCCceEEcCCCCHHHHHHHHHHh
Q 037416 165 RNKQVLRN-------WGVSKIYEMQALEYHHALELFCRH 196 (362)
Q Consensus 165 r~~~~~~~-------~~~~~~~~l~~l~~~e~~~ll~~~ 196 (362)
..+++... ......+.++..+.++...++...
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 54433111 123457889999999999988764
No 99
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.59 E-value=2e-06 Score=87.32 Aligned_cols=157 Identities=10% Similarity=0.058 Sum_probs=87.3
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCC
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPG 96 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 96 (362)
.|..-++++||+.++.++.+.|.. .....++++|++|+|||+++..++.++.... +..++.........
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a--- 247 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA--- 247 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc--CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh---
Confidence 344556799999999999998863 3344577999999999999999999874421 22333321111000
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhh--CCceEEEEEeCCCCch----------hhhHhhccCCCCCCCcEEEEEe
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRL--SRMKVLIVFDDVTCFN----------QLESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~llvlDd~~~~~----------~~~~l~~~~~~~~~~~~ilits 164 (362)
...........+..+...+ ...++++++|+++... .-..+.+.+. ....++|.+|
T Consensus 248 -----------g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaT 314 (857)
T PRK10865 248 -----------GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGAT 314 (857)
T ss_pred -----------ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcC
Confidence 0000000111122222211 2468999999995332 1222333332 2344566655
Q ss_pred CChHHHhh-------cCCCceEEcCCCCHHHHHHHHHHhh
Q 037416 165 RNKQVLRN-------WGVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 165 r~~~~~~~-------~~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
..+++... ......+.+...+.++...+++...
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 54443111 1233466677778888888876543
No 100
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.57 E-value=5.9e-06 Score=69.69 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=107.8
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCC-C-chHH----
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVI-P-YIDL---- 121 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~---- 121 (362)
..+.+++.++|+-|+|||.+.+.....+.++-..++++. ....+...+...+...+..+.... . ....
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHH
Confidence 356779999999999999999955554443323332332 224556677777777666533211 1 1111
Q ss_pred HHHhh-CCc-eEEEEEeCCCC--chhhhHhhc---cCCCCCCCcEEEEEeCCh--------HHHhhcCCCc-eEEcCCCC
Q 037416 122 NFRRL-SRM-KVLIVFDDVTC--FNQLESLIG---SLDRLTPVSRIIITTRNK--------QVLRNWGVSK-IYEMQALE 185 (362)
Q Consensus 122 ~~~~l-~~~-~~llvlDd~~~--~~~~~~l~~---~~~~~~~~~~ilitsr~~--------~~~~~~~~~~-~~~l~~l~ 185 (362)
+.... +++ +..+++|+.++ .+.++.+.. .-.+.+...+|+.....+ .+........ .+.++|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 22222 334 49999999953 333444432 222222223455544322 1111111122 38999999
Q ss_pred HHHHHHHHHHhhhcCCCC-CCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 186 YHHALELFCRHAFKQNHP-DVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 186 ~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
.++...++..++.+...+ +...++....|+..++|.|.+|+.++...
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 999999999988766533 33456778889999999999999887653
No 101
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.57 E-value=1.9e-06 Score=79.63 Aligned_cols=179 Identities=18% Similarity=0.204 Sum_probs=100.8
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
|...-..+.|-+...+++.+.+.- +-..++.++|+||+|+|||++|+.++......|- .+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~----- 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV----- 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-----
Confidence 444445688999999888876531 1123677999999999999999999997643321 111
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch----------------hhhHhhccCCC-
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDR- 153 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 153 (362)
. ..+..... .. ....+.. +.......|.+|+||+++... .+..++..+..
T Consensus 212 ---~---s~l~~k~~----ge--~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 212 ---G---SEFVQKYL----GE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ---h---HHHHHHhc----ch--hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 0 01111110 00 0111112 222334578999999985321 12223222221
Q ss_pred -CCCCcEEEEEeCChHHH-hhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 154 -LTPVSRIIITTRNKQVL-RNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 154 -~~~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
...+..+|++|...+.. +.+ .....+.++..+.++..+++........... .-....+++.+.|+.-+
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~---dvd~~~la~~t~g~sga 353 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE---EVDLEDFVSRPEKISAA 353 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc---ccCHHHHHHHcCCCCHH
Confidence 12345667666544222 211 2345788999999998888887664332221 12366778888776554
No 102
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.55 E-value=1.3e-06 Score=77.54 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=101.0
Q ss_pred CCCCcccccchHHHHHHHhccCCCC-eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKG-VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
..+.|.+|+.++..|..++...+.. +..|.|+|.+|+|||.+.+++.+.... ..+|+.+.. .++...+++.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e-----cft~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE-----CFTYAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH-----hccHHHHHHH
Confidence 4567999999999999998755443 556799999999999999999998733 356766332 6777888888
Q ss_pred HHHHHh-cCCC-C---C--CchHHH----HH--hhC--CceEEEEEeCCCCchhhhH-----hhccCCCC-CCCcEEEEE
Q 037416 105 LLSNLL-KDKN-V---I--PYIDLN----FR--RLS--RMKVLIVFDDVTCFNQLES-----LIGSLDRL-TPVSRIIIT 163 (362)
Q Consensus 105 l~~~~~-~~~~-~---~--~~~~~~----~~--~l~--~~~~llvlDd~~~~~~~~~-----l~~~~~~~-~~~~~ilit 163 (362)
++.... ...+ . . ..+..+ .. ... +..++||+||++...+.+. +.....-. .+.+.|+..
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 888874 2222 1 1 111111 11 122 3579999999975544332 22111111 123333332
Q ss_pred eC--ChHHHhhcCCC--ceEEcCCCCHHHHHHHHHHh
Q 037416 164 TR--NKQVLRNWGVS--KIYEMQALEYHHALELFCRH 196 (362)
Q Consensus 164 sr--~~~~~~~~~~~--~~~~l~~l~~~e~~~ll~~~ 196 (362)
.- .......+++. .++.++..+.+|...++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 22333333433 45777999999999888654
No 103
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=9.7e-06 Score=73.93 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=122.2
Q ss_pred CCCCCcccccchHHHHHHHhccC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCccc--ceeeecccccccCCCchHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVE--SKGVYALGIWGISGIGKTAIARAIFHKISGDFEC--SCFLENVREESQRPGGLAC 100 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 100 (362)
..+..++||+.|+..+..|+... ....+.+-|.|.+|.|||.+...++.++...... .+++.+.. .....+
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s-----l~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS-----LTEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc-----ccchHH
Confidence 34577999999999999999762 3456778999999999999999999887654332 34444221 234456
Q ss_pred HHHHHHHHHhcCCC----CCCchHHHHHhhCC--ceEEEEEeCCCCchh-----hhHhhccCCCCCCCcEEEEEeCCh--
Q 037416 101 LRQKLLSNLLKDKN----VIPYIDLNFRRLSR--MKVLIVFDDVTCFNQ-----LESLIGSLDRLTPVSRIIITTRNK-- 167 (362)
Q Consensus 101 ~~~~l~~~~~~~~~----~~~~~~~~~~~l~~--~~~llvlDd~~~~~~-----~~~l~~~~~~~~~~~~ilitsr~~-- 167 (362)
++..+...+..... ..+....+.....+ ..+++|+|+++.... +..+... .. .+++++++..-..
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew-p~-lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW-PK-LPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc-cc-CCcceeeeeeehhhh
Confidence 66666665532222 21222334444333 468999999964332 2222111 11 2344554444221
Q ss_pred ----HHHhhcC-----CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhc
Q 037416 168 ----QVLRNWG-----VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLY 233 (362)
Q Consensus 168 ----~~~~~~~-----~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~ 233 (362)
.++..+. ....+.++|.+.++..+++..++....... ..+..++.++..+.|.---+..+..+.+
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~-~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSI-FLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccc-cchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 1122221 235688899999999999999985443332 3345666777777777766666666555
No 104
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.54 E-value=5.4e-06 Score=70.14 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=73.5
Q ss_pred CCCCCCCcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
.+...+.++|-+.+.+.|.+.... .+....-|++||+.|+|||++++.+...+....-..+-+. ... ...+..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~----k~~-L~~l~~ 96 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS----KED-LGDLPE 96 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC----HHH-hccHHH
Confidence 344456799999999998764443 1233556889999999999999999998876543333332 111 222333
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC---CchhhhHhhc----cCCCCCCCcEEEEEeCCh
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT---CFNQLESLIG----SLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~---~~~~~~~l~~----~~~~~~~~~~ilitsr~~ 167 (362)
+...+ . -...+++|.+||+- .......+.. .+...+.+..|.+||...
T Consensus 97 l~~~l----~---------------~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 97 LLDLL----R---------------DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred HHHHH----h---------------cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 33222 1 12468999999992 3333333333 234445566666777543
No 105
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=4.5e-06 Score=81.18 Aligned_cols=187 Identities=12% Similarity=0.124 Sum_probs=108.1
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
..-+.++|.+...+.|..++..+ .-.+.++++|+.|+||||+|+.+++.+....... .-.|.. -..+..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-~~~c~~---------c~~c~~ 81 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-AEPCNV---------CPPCVE 81 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-CCCCCc---------cHHHHH
Confidence 34456999999999999998732 2356778999999999999999999863211000 000000 000000
Q ss_pred HHHHH-------hcCC-CCCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCC-hH
Q 037416 105 LLSNL-------LKDK-NVIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRN-KQ 168 (362)
Q Consensus 105 l~~~~-------~~~~-~~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~-~~ 168 (362)
+.... .... .....+..+.... .++.-++|+|+++.. .....++..+..-...+.+|++|.+ ..
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 00000 0000 0111122222222 234458999999633 4455666555544456666655543 33
Q ss_pred HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 169 VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 169 ~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
+... .+....+.+.+++.++....+...+...+. ...++.+..|+..++|...-
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~ 216 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRD 216 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHH
Confidence 3332 234567889999999999988876643322 13457788899999997754
No 106
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.7e-06 Score=75.20 Aligned_cols=164 Identities=13% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHh-------cCC--C--CCC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLL-------KDK--N--VIP 117 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~--~--~~~ 117 (362)
.-.+.++++|+.|+|||++|..+++.+--...... -.|..+ .-++.+..... .+. . ..+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-~~Cg~C---------~sC~~~~~g~HPD~~~i~~~~~~~~i~id 89 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-GACGSC---------KGCQLLRAGSHPDNFVLEPEEADKTIKVD 89 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCC---------HHHHHHhcCCCCCEEEEeccCCCCCCCHH
Confidence 34778999999999999999999998632110000 000000 00000000000 000 0 111
Q ss_pred chHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHH
Q 037416 118 YIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSKIYEMQALEYHH 188 (362)
Q Consensus 118 ~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e 188 (362)
.+..+.+.+ .++.-++|+|+++ +.+....++..+..-+.++.+|++|.+. .+.+. .+....+.+.+++.++
T Consensus 90 ~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~ 169 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEE 169 (328)
T ss_pred HHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHH
Confidence 111122211 2334456789996 4555666666655545667777777654 33333 3455689999999999
Q ss_pred HHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 189 ALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 189 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
+.+++.... .. ..++....++..++|.|.....+
T Consensus 170 ~~~~L~~~~-~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 170 SLQWLQQAL-PE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHhc-cc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 999997653 11 12344667889999999865544
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.50 E-value=2.1e-06 Score=85.43 Aligned_cols=152 Identities=15% Similarity=0.189 Sum_probs=85.7
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCCchHHH
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
++++||++++.++.+.|... ...-++|+|++|+|||++++.+++.+.... ++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l----------~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL----------DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec----------cHHHH
Confidence 46999999999999988742 334467899999999999999998753321 2222221 11111
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhh-CCceEEEEEeCCCCc--------hh--hh-HhhccCCCCCCCcEEEEEeCChHH
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRL-SRMKVLIVFDDVTCF--------NQ--LE-SLIGSLDRLTPVSRIIITTRNKQV 169 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~--------~~--~~-~l~~~~~~~~~~~~ilitsr~~~~ 169 (362)
. ............+..+...+ ...+.+|++|+++.. .. .. .+.+.+. ....++|.+|..+++
T Consensus 254 l----aG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~ 327 (758)
T PRK11034 254 L----AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_pred h----cccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHH
Confidence 0 00000001111222222222 345789999999522 11 11 1223332 233455555544332
Q ss_pred Hhh-------cCCCceEEcCCCCHHHHHHHHHHhh
Q 037416 170 LRN-------WGVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 170 ~~~-------~~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
... ......+.+++.+.+++.+++....
T Consensus 328 ~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111 1234689999999999999998643
No 108
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=5.5e-06 Score=74.32 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=108.9
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC---------------cccceeeecccccc
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD---------------FECSCFLENVREES 92 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~---------------~~~~~~~~~~~~~~ 92 (362)
+.++|.+...+.|.+.+..+ .-.+...++|+.|+||+++|..+++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 35899999999999998732 236889999999999999999999985321 11222222100000
Q ss_pred cCCCchHHHHHHHHHHHh--cCCC---CCCchHHHHHhhC-----CceEEEEEeCCC--CchhhhHhhccCCCCCCCcEE
Q 037416 93 QRPGGLACLRQKLLSNLL--KDKN---VIPYIDLNFRRLS-----RMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRI 160 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~--~~~~---~~~~~~~~~~~l~-----~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~i 160 (362)
. .....+.. .... .... ....+..+...+. +..-++|+|+++ +......++..+..-+ .+.+
T Consensus 83 g-~~~~~~~~----~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 83 G-KLITASEA----EEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred c-cccchhhh----hhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 0 00000000 0000 0000 1112223333332 355689999996 3344555555554334 4455
Q ss_pred EEEeC-ChHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 161 IITTR-NKQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 161 litsr-~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
|+++. ...+.+. .+....+++.+++.++..+.+...... . ........++..++|.|.....+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~-~----~~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE-E----ILNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc-c----cchhHHHHHHHHcCCCHHHHHHHHH
Confidence 55554 3344333 345678999999999999999876421 1 1112246789999999987654433
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.47 E-value=2.5e-06 Score=79.52 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=100.3
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
|+..-..+.|.+.+++++.+++.- +-..++.++|+|++|+|||++|+.++..+...|- .+. .
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~----~ 250 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV----G 250 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe----c
Confidence 444445678999999999887641 1123567899999999999999999998754431 111 0
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch----------------hhhHhhccCCC-
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDR- 153 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 153 (362)
+ .+...+. .. ....+.. +.......+.+++||+++... .+..++..+..
T Consensus 251 s-------eL~~k~~----Ge--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 251 S-------ELIQKYL----GD--GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred c-------hhhhhhc----ch--HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 0 0110000 00 0011111 222334568899999984211 01122222211
Q ss_pred -CCCCcEEEEEeCChHHHhh-c----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 154 -LTPVSRIIITTRNKQVLRN-W----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 154 -~~~~~~ilitsr~~~~~~~-~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
...+..||.+|........ + .....+.++..+.++..++|..+........ .-....++..+.|.--+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~---dvdl~~la~~t~g~sgA 391 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE---DVDLEEFIMAKDELSGA 391 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc---CcCHHHHHHhcCCCCHH
Confidence 1234567777664433222 1 2345789999999999999987764433222 12356677777766554
No 110
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.46 E-value=9.1e-06 Score=76.98 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=93.4
Q ss_pred CCcccccchHHHHHHHh---cc-----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc-ccCCCch
Q 037416 28 NQLVGVESTVDEIESLL---GV-----ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE-SQRPGGL 98 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l---~~-----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 98 (362)
+.+.|.+...+.+.+.. .. +-..++-|.++||+|+|||.+|+.++..+.-.+ +....... +......
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGes 303 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGES 303 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChH
Confidence 45677665555554321 10 113466799999999999999999999864332 11101000 0000000
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh--------------hhHhhccCCCCCCCcEEEEEe
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ--------------LESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~--------------~~~l~~~~~~~~~~~~ilits 164 (362)
....+.+ +...-...|++|++|+++.... +..++..+.....+..+|.||
T Consensus 304 e~~l~~~----------------f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 304 ESRMRQM----------------IRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred HHHHHHH----------------HHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 1111111 1112234689999999952210 122222222223334455566
Q ss_pred CChHH-Hhh----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 165 RNKQV-LRN----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 165 r~~~~-~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
..... .+. ......+.++.-+.++..++|..++.... +........+.+++.+.|+.-+
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCHH
Confidence 54422 211 13456788888899999999988774432 1111123477888888887665
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.45 E-value=2.1e-06 Score=66.88 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 037416 54 LGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
|.|+|++|+|||++++.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999974
No 112
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.44 E-value=1.2e-05 Score=71.26 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=80.4
Q ss_pred cccccchHHHHHHHhc--------c--C---CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc---c-cceeeecccccc
Q 037416 30 LVGVESTVDEIESLLG--------V--E---SKGVYALGIWGISGIGKTAIARAIFHKISGDF---E-CSCFLENVREES 92 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~--------~--~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~-~~~~~~~~~~~~ 92 (362)
++|-+...+++.++.. . + ......++++|++|+|||++|+.++..+.... . ..+.+.
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~------ 97 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT------ 97 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec------
Confidence 6776666666644321 0 0 11123588999999999999998888764321 1 112221
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc-----------hhhhHhhccCCCCCCCcEEE
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF-----------NQLESLIGSLDRLTPVSRII 161 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~il 161 (362)
..++. ..+.... ......+.+.. .+-+|+||+++.. .....+...+.....+.++|
T Consensus 98 -----~~~l~----~~~~g~~--~~~~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI 164 (284)
T TIGR02880 98 -----RDDLV----GQYIGHT--APKTKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVI 164 (284)
T ss_pred -----HHHHh----Hhhcccc--hHHHHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEE
Confidence 01111 1111111 11111222222 2368899999632 12344444444444556666
Q ss_pred EEeCChHHHhhc--------CCCceEEcCCCCHHHHHHHHHHhhhc
Q 037416 162 ITTRNKQVLRNW--------GVSKIYEMQALEYHHALELFCRHAFK 199 (362)
Q Consensus 162 itsr~~~~~~~~--------~~~~~~~l~~l~~~e~~~ll~~~~~~ 199 (362)
+++..+.+.... .....+.+++++.+|..+++...+..
T Consensus 165 ~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 665543221110 12357999999999999999887644
No 113
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=3.2e-06 Score=82.15 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=43.1
Q ss_pred CCCCCCcccccchHHHHHHHhccCC---CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVES---KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~---~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
|...+.++|.++.++.+..++.... ...++++|+||+|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4455679999999999999987522 2346799999999999999999998753
No 114
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.41 E-value=7.8e-06 Score=77.45 Aligned_cols=161 Identities=16% Similarity=0.278 Sum_probs=88.5
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-----ccceeee
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDF-----ECSCFLE 86 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~~~~~~~ 86 (362)
|...-+.+.|.+.+++++.+.+.. +-..++-++|+||+|+|||++++.+++.+.... ....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 333445578899999999887531 112356699999999999999999999875442 1222222
Q ss_pred ccccccc---CCCchHHHHHHHHHHHhcCCCCCCchHHHHH-hhCCceEEEEEeCCCCch---------h-----hhHhh
Q 037416 87 NVREESQ---RPGGLACLRQKLLSNLLKDKNVIPYIDLNFR-RLSRMKVLIVFDDVTCFN---------Q-----LESLI 148 (362)
Q Consensus 87 ~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlDd~~~~~---------~-----~~~l~ 148 (362)
...... .........+.+ ++.... ...+++++|+||+++... . +..++
T Consensus 257 -v~~~eLl~kyvGete~~ir~i-------------F~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL 322 (512)
T TIGR03689 257 -IKGPELLNKYVGETERQIRLI-------------FQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLL 322 (512)
T ss_pred -ccchhhcccccchHHHHHHHH-------------HHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHH
Confidence 111000 000000001111 111111 123478999999995321 1 22333
Q ss_pred ccCCCCC--CCcEEEEEeCChHHHh-hc----CCCceEEcCCCCHHHHHHHHHHhh
Q 037416 149 GSLDRLT--PVSRIIITTRNKQVLR-NW----GVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 149 ~~~~~~~--~~~~ilitsr~~~~~~-~~----~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
..+.... .+..+|.||....... .+ .....+.++..+.++..++|..++
T Consensus 323 ~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 323 SELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3332211 2334555554432222 11 234568999999999999998876
No 115
>CHL00176 ftsH cell division protein; Validated
Probab=98.39 E-value=6.7e-06 Score=80.44 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=96.6
Q ss_pred CCcccccchHHHHHHHhc---cC-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCc
Q 037416 28 NQLVGVESTVDEIESLLG---VE-------SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGG 97 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~---~~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (362)
+.++|.+...+++.+.+. .. ...++-++++||+|+|||+||+.++......| +.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~i----------s 248 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSI----------S 248 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eec----------c
Confidence 457888877777666542 11 12245699999999999999999998753221 111 0
Q ss_pred hHHHHHHHHHHHhcCCCCCCchH-HHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCCC--CCCCc
Q 037416 98 LACLRQKLLSNLLKDKNVIPYID-LNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDR--LTPVS 158 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~--~~~~~ 158 (362)
..++...... . ....+. .+.......|++|+|||++... .+..++..+.. ...+.
T Consensus 249 ~s~f~~~~~g-----~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 249 GSEFVEMFVG-----V-GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHHHHHhhh-----h-hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 0111111100 0 011122 2344445678999999995331 12333322221 12344
Q ss_pred EEEEEeCChHHHhh-----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc
Q 037416 159 RIIITTRNKQVLRN-----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP 222 (362)
Q Consensus 159 ~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 222 (362)
.+|.+|........ ......+.++..+.++..+++...+..... ........+++.+.|..
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPGFS 388 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCCCC
Confidence 55555554322221 123467889999999999999887744221 22345778888888843
No 116
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.39 E-value=8.1e-06 Score=78.42 Aligned_cols=179 Identities=16% Similarity=0.168 Sum_probs=96.7
Q ss_pred CCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 27 KNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
-+.++|-+...+++.+++.. +...++-++++||+|+|||+|++.++....-.| +..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i---------- 119 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSI---------- 119 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eec----------
Confidence 34578877776666554431 122355699999999999999999998753221 111
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch----------------hhhHhhccCCCC--CCC
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDRL--TPV 157 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~--~~~ 157 (362)
+..++..... . . ....+.. +.......|.+|+||+++... .+..++..+... ..+
T Consensus 120 ~~~~~~~~~~----g-~-~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 120 SGSDFVEMFV----G-V-GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred cHHHHHHHHh----c-c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1111111110 0 0 1111222 333334568899999995321 112222222211 123
Q ss_pred cEEEEEeCChHH-----HhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc-hHHHHH
Q 037416 158 SRIIITTRNKQV-----LRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP-LALNVL 228 (362)
Q Consensus 158 ~~ilitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~ 228 (362)
..||.||..+.. .........+.++..+.++..+++...+....... ......+++.+.|+. .-|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 345555544321 11112346788999999999999987764432221 234668899998855 344443
No 117
>CHL00181 cbbX CbbX; Provisional
Probab=98.38 E-value=2.3e-05 Score=69.56 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=71.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC-c-ccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD-F-ECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
..++++|++|+|||++|+.++..+... + ...-++. . +..++...+ .... ......+.+.. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v-----~~~~l~~~~----~g~~--~~~~~~~l~~a--~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----V-----TRDDLVGQY----IGHT--APKTKEVLKKA--M 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----e-----cHHHHHHHH----hccc--hHHHHHHHHHc--c
Confidence 358899999999999999998875321 1 0011111 0 011121111 1111 01111222222 2
Q ss_pred eEEEEEeCCCCc-----------hhhhHhhccCCCCCCCcEEEEEeCChHHHh------hc--CCCceEEcCCCCHHHHH
Q 037416 130 KVLIVFDDVTCF-----------NQLESLIGSLDRLTPVSRIIITTRNKQVLR------NW--GVSKIYEMQALEYHHAL 190 (362)
Q Consensus 130 ~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~ilitsr~~~~~~------~~--~~~~~~~l~~l~~~e~~ 190 (362)
.-+|+||+++.. +....+...+.....+..||+++....+.. .+ .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 359999999642 123444444443445566666665433211 11 13457999999999999
Q ss_pred HHHHHhhhc
Q 037416 191 ELFCRHAFK 199 (362)
Q Consensus 191 ~ll~~~~~~ 199 (362)
+++...+..
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 999887744
No 118
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.37 E-value=8.6e-06 Score=79.83 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=40.4
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|..-+.++|++..+..+.+.+. ......++|+|++|+||||||+.+....
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4444568999999999887775 3445679999999999999999998765
No 119
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.8e-05 Score=69.89 Aligned_cols=179 Identities=19% Similarity=0.266 Sum_probs=102.0
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
|-.....+=|-+.++++|.+..+- +=..++-|.+|||+|+|||-||+.++++..-.| +....
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg-- 218 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG-- 218 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc--
Confidence 344444566788888888887652 113367799999999999999999999854333 32111
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHh-hCCceEEEEEeCCCCch----------------hhhHhhccCCC-
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRR-LSRMKVLIVFDDVTCFN----------------QLESLIGSLDR- 153 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~- 153 (362)
.++.+.. ..+. ......+... -...|++|++|+++... .+-+++..+.=
T Consensus 219 -------SElVqKY----iGEG--aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 219 -------SELVQKY----IGEG--ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred -------HHHHHHH----hccc--hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 1222222 1111 1122222223 34568999999994322 12333333211
Q ss_pred -CCCCcEEEEE-eCCh----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 154 -LTPVSRIIIT-TRNK----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 154 -~~~~~~ilit-sr~~----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
...+.+||.. .|.+ .+.........++++.-+.+...++|.-+...-..... -.++.++..|.|..-|
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~d---vd~e~la~~~~g~sGA 359 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADD---VDLELLARLTEGFSGA 359 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccC---cCHHHHHHhcCCCchH
Confidence 1244567654 4533 22222234457888877777777777766544332221 2377888899988766
No 120
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.34 E-value=3.7e-06 Score=69.75 Aligned_cols=156 Identities=17% Similarity=0.275 Sum_probs=84.3
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
.-..+||-++.+++|.-... ++..+.++|.||+|+||||-+..+++.+-. .|...+.-.|..+ ..+..-+...
T Consensus 25 ~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd----eRGIDvVRn~ 98 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD----ERGIDVVRNK 98 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc----ccccHHHHHH
Confidence 34568999999999998776 456777899999999999999999998643 3333333322222 2222222222
Q ss_pred HHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh--hhHhhccCCCCCCCcEEEEEeC-ChHHHhh-cCCCceEE
Q 037416 105 LLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ--LESLIGSLDRLTPVSRIIITTR-NKQVLRN-WGVSKIYE 180 (362)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~--~~~l~~~~~~~~~~~~ilitsr-~~~~~~~-~~~~~~~~ 180 (362)
+ ..+.... ...-.++.-++|||+.++..+ -..+...+...++.+++.+.+. +..+... .+....++
T Consensus 99 I-K~FAQ~k---------v~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLR 168 (333)
T KOG0991|consen 99 I-KMFAQKK---------VTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILR 168 (333)
T ss_pred H-HHHHHhh---------ccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhh
Confidence 2 1111100 000124567999999986543 2223322222234444444332 2222211 12334566
Q ss_pred cCCCCHHHHHHHHHHhh
Q 037416 181 MQALEYHHALELFCRHA 197 (362)
Q Consensus 181 l~~l~~~e~~~ll~~~~ 197 (362)
...|+..+...-+....
T Consensus 169 ysklsd~qiL~Rl~~v~ 185 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVA 185 (333)
T ss_pred hcccCHHHHHHHHHHHH
Confidence 66777766655554433
No 121
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=4.9e-05 Score=68.06 Aligned_cols=182 Identities=15% Similarity=0.140 Sum_probs=95.6
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee-ccc--ccccCCCchHHHHHHHHHHHhcC-
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE-NVR--EESQRPGGLACLRQKLLSNLLKD- 112 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~~~~~- 112 (362)
.++|.+.+.. +.-++.+.++|+.|+||+++|..+++.+--......-.+ ++. .... -.++.-+.. .-......
T Consensus 13 ~~~l~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~-HPD~~~i~~-~p~~~~~k~ 89 (319)
T PRK08769 13 YDQTVAALDA-GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGT-HPDLQLVSF-IPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHc-CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCC-CCCEEEEec-CCCcccccc
Confidence 3445555542 233678999999999999999999987532110000000 000 0000 000000000 00000000
Q ss_pred --CCCCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEc
Q 037416 113 --KNVIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSKIYEM 181 (362)
Q Consensus 113 --~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l 181 (362)
.-.++.+..+.+.+ .++.-++|+|+++ +...-..++-.+..-..++.+|+++... .+.+. .+....+.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 00011112222222 2345699999997 4444555555554445667677766643 34333 245668899
Q ss_pred CCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 182 QALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 182 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+++.+++.+.+... +. .+..+..++..++|.|+....+.
T Consensus 170 ~~~~~~~~~~~L~~~----~~----~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----GV----SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCcCHHHHHHHHHHc----CC----ChHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999888653 11 12346678999999998765544
No 122
>PRK10536 hypothetical protein; Provisional
Probab=98.32 E-value=5e-06 Score=71.16 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=75.5
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH-h-hcCcccceeeecccccc----cCCCchHHH
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK-I-SGDFECSCFLENVREES----QRPGGLACL 101 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~-~~~~~~~~~~~~~~~~~----~~~~~~~~~ 101 (362)
..+.+|......+..++.. ...+++.|++|+|||+||..++.+ + .+.|...+.....-... -.+.+..+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4578899999999998862 348999999999999999999885 3 34444444332221111 112233222
Q ss_pred HHHHHHHHhcCCC---CCCchHH------------HHHhhCCce---EEEEEeCCCCchhhhHhhccCCCCCCCcEEEEE
Q 037416 102 RQKLLSNLLKDKN---VIPYIDL------------NFRRLSRMK---VLIVFDDVTCFNQLESLIGSLDRLTPVSRIIIT 163 (362)
Q Consensus 102 ~~~l~~~~~~~~~---~~~~~~~------------~~~~l~~~~---~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilit 163 (362)
...++..+..... .....+. -...+++++ -+||+|+..+... ..+...+.+.+.+++++++
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEe
Confidence 2222221111110 0000110 233455655 4999999964443 2222333445688999988
Q ss_pred eCCh
Q 037416 164 TRNK 167 (362)
Q Consensus 164 sr~~ 167 (362)
.-..
T Consensus 210 GD~~ 213 (262)
T PRK10536 210 GDIT 213 (262)
T ss_pred CChh
Confidence 7543
No 123
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.29 E-value=2.5e-05 Score=68.32 Aligned_cols=195 Identities=16% Similarity=0.160 Sum_probs=108.5
Q ss_pred CCccccc---chHHHHHHHhccC-CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc-----cceeeecccccccCCCch
Q 037416 28 NQLVGVE---STVDEIESLLGVE-SKGVYALGIWGISGIGKTAIARAIFHKISGDFE-----CSCFLENVREESQRPGGL 98 (362)
Q Consensus 28 ~~~vGR~---~el~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 98 (362)
+.|||=. +.++.|.+++..+ ....+-+.|+|++|+|||++++.++......++ ..+++. ......+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCCh
Confidence 4577743 3445566666542 334567999999999999999999987532221 122322 11225667
Q ss_pred HHHHHHHHHHHhcCCCCCCchHH----HHHhhCC-ceEEEEEeCCCCch-----hhhHhhccCCCCC---CCcEEEEEeC
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDL----NFRRLSR-MKVLIVFDDVTCFN-----QLESLIGSLDRLT---PVSRIIITTR 165 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~----~~~~l~~-~~~llvlDd~~~~~-----~~~~l~~~~~~~~---~~~~ilitsr 165 (362)
..++..++..+............ ....++. +.-++|+|++++.- .-..++..+...+ .-+-|.+-++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 88888888888766653333333 3334443 44599999996432 1222222222112 2222333332
Q ss_pred --------ChHHHhhcCCCceEEcCCCCHHHHHHHHHHhhhc----CCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 166 --------NKQVLRNWGVSKIYEMQALEYHHALELFCRHAFK----QNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 166 --------~~~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~----~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
++++.+ ....+.+++...++-..-|...+.. ........+++++.|++.++|+.--+..+.
T Consensus 190 ~A~~al~~D~QLa~---RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 190 EAYRALRTDPQLAS---RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred HHHHHhccCHHHHh---ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 222222 2456677777665444333332211 112223457889999999999887665443
No 124
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=9.6e-05 Score=66.35 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=94.8
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHh-------
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLL------- 110 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 110 (362)
+.|.+.+.. +.-.+...++|+.|+||+++|..++..+--...... -.|..+ .-++.+.....
T Consensus 12 ~~l~~~~~~-~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-~~Cg~C---------~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 12 QQITQAFQQ-GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-QPCGQC---------HSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHc-CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCC---------HHHHHHhcCCCCCEEEEc
Confidence 445555542 223678889999999999999999997522110000 000000 00111100000
Q ss_pred c-CCC--CCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCce
Q 037416 111 K-DKN--VIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSKI 178 (362)
Q Consensus 111 ~-~~~--~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~~ 178 (362)
. +.. ..+.+..+.+.+ .++.-++|+|+++ +......++-.+..-+.++.+|++|... .+.+. .+....
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 0 000 111122222222 2445688899997 4445566666665555666777776654 44433 345678
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 179 YEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 179 ~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
+.+.+++.++..+.+.... .. ....+...+..++|.|...
T Consensus 161 ~~~~~~~~~~~~~~L~~~~-~~------~~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQS-SA------EISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHh-cc------ChHHHHHHHHHcCCCHHHH
Confidence 9999999999999998653 11 1223567788999999644
No 125
>PRK12377 putative replication protein; Provisional
Probab=98.27 E-value=3.9e-06 Score=72.42 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=55.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
+...+.|+|++|+|||+||..+++.+......++++. ..++...+-...... .....+...+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~----~~~~~~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG----QSGEKFLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc----chHHHHHHHh-cC
Confidence 3457899999999999999999999865533344443 123333332222111 1122233333 34
Q ss_pred eEEEEEeCCC--Cc--hhhhHhhccCCCC-CCCcEEEEEeCC
Q 037416 130 KVLIVFDDVT--CF--NQLESLIGSLDRL-TPVSRIIITTRN 166 (362)
Q Consensus 130 ~~llvlDd~~--~~--~~~~~l~~~~~~~-~~~~~ilitsr~ 166 (362)
.-||||||+. .. ...+.+...+... .....+|+||..
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5599999993 22 2223333333222 223346777753
No 126
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.26 E-value=2e-05 Score=79.40 Aligned_cols=175 Identities=14% Similarity=0.169 Sum_probs=94.2
Q ss_pred CCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 28 NQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
+.+.|.+..++++.+++.- +-...+.++|+|++|+|||+|++.+++.+...| +.+....-.+....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~~~i~~~~~g 254 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISINGPEIMSKYYG 254 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEecHHHhccccc
Confidence 3488999999999887641 112346789999999999999999999764332 22210000000000
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhhHhhccCCCCCC-CcEEEE
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLESLIGSLDRLTP-VSRIII 162 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~~~-~~~ili 162 (362)
......+. .+.......+.+|+||+++... ....+...+..... +..+++
T Consensus 255 ~~~~~l~~----------------lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 255 ESEERLRE----------------IFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred HHHHHHHH----------------HHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 00011111 1222334567899999984321 12233333322222 222333
Q ss_pred -EeCChH-HHhhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 163 -TTRNKQ-VLRNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 163 -tsr~~~-~~~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
++.... +...+ .....+.++..+.++..+++........... ....+.+++.+.|..-+
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCHH
Confidence 443322 21111 1235677888899998888886543322211 23467788888887654
No 127
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.8e-05 Score=67.17 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=94.7
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHHHHHHH-------
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNL------- 109 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------- 109 (362)
++|.+.+.+ +.-.+...++|+.|+||+++|..++..+-- +....- .|..+ .-++.+....
T Consensus 12 ~~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~--~Cg~C---------~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 12 EQLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK--SCGHC---------RGCQLMQAGTHPDYYTL 79 (334)
T ss_pred HHHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC--CCCCC---------HHHHHHHcCCCCCEEEE
Confidence 445555542 234778899999999999999999987521 100000 00000 0000000000
Q ss_pred hcCC--C--CCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCC
Q 037416 110 LKDK--N--VIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVS 176 (362)
Q Consensus 110 ~~~~--~--~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~ 176 (362)
..+. . .++.+..+.+.+ .++.-++|+|+.+ +.+.-..++-.+..-+.++.+|++|.+. .+.+. .+..
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0000 0 111122222222 2455699999996 4445555655555445666666666543 44434 3445
Q ss_pred ceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHH
Q 037416 177 KIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALN 226 (362)
Q Consensus 177 ~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~ 226 (362)
..+.+.+++.+++.+.+.... + ..++.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~---~----~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV---T----MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc---C----CCHHHHHHHHHHcCCCHHHHH
Confidence 678999999999998886542 1 123446778999999997543
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.23 E-value=4.8e-06 Score=78.40 Aligned_cols=188 Identities=16% Similarity=0.171 Sum_probs=113.7
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccc---cccCCCchHHHHHH
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVRE---ESQRPGGLACLRQK 104 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 104 (362)
+.++|.+.....|...+..+ .-.+.....|+.|+||||+|+-++..+.-.-. ...-+|..+ .........++.+
T Consensus 16 ~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-~~~ePC~~C~~Ck~I~~g~~~DviE- 92 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENG-PTAEPCGKCISCKEINEGSLIDVIE- 92 (515)
T ss_pred HHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-CCCCcchhhhhhHhhhcCCcccchh-
Confidence 34799999999999998732 22567889999999999999999997532210 000010000 0000001111110
Q ss_pred HHHHHhcCCC-CCCchHHHHHhhC-----CceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cC
Q 037416 105 LLSNLLKDKN-VIPYIDLNFRRLS-----RMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WG 174 (362)
Q Consensus 105 l~~~~~~~~~-~~~~~~~~~~~l~-----~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~ 174 (362)
+...+. ..+.+..+.+... ++.=++|+|+++ +...+..++-.+..-+....+|+.|.+. .+... .+
T Consensus 93 ----iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 93 ----IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred ----hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhh
Confidence 000000 2233333444433 344599999996 6667888887776666667766666554 33222 35
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 175 VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 175 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
....+.+..++.++....+...+...+.. ..++.+..|+...+|...-
T Consensus 169 Rcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 169 RCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLRD 216 (515)
T ss_pred ccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChhh
Confidence 56789999999999999998877433322 3456777888888885543
No 129
>PRK08116 hypothetical protein; Validated
Probab=98.22 E-value=9.5e-06 Score=71.24 Aligned_cols=103 Identities=21% Similarity=0.225 Sum_probs=57.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
...++|+|++|+|||+||..+++.+......+++++ ..++...+....... .......+...+.+-+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS--GKEDENEIIRSLVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc--ccccHHHHHHHhcCCC
Confidence 346899999999999999999999865533334443 123333333332221 1122333445454444
Q ss_pred EEEEEeCCC--Cchhh--hHhhccCCCC-CCCcEEEEEeCCh
Q 037416 131 VLIVFDDVT--CFNQL--ESLIGSLDRL-TPVSRIIITTRNK 167 (362)
Q Consensus 131 ~llvlDd~~--~~~~~--~~l~~~~~~~-~~~~~ilitsr~~ 167 (362)
+|||||+. ....| ..+...+... ..+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999993 22222 2233322221 2345688888643
No 130
>PRK08181 transposase; Validated
Probab=98.20 E-value=3.9e-06 Score=73.34 Aligned_cols=100 Identities=21% Similarity=0.149 Sum_probs=54.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
..-++|+|++|+|||+|+..+++.+....-.++|+. ..++...+..... ..........+. +.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~-----~~~~~~~l~~l~-~~ 168 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR-----ELQLESAIAKLD-KF 168 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh-----CCcHHHHHHHHh-cC
Confidence 345899999999999999999998765433344443 1233333322211 112222233332 34
Q ss_pred EEEEEeCCCC----chhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 131 VLIVFDDVTC----FNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 131 ~llvlDd~~~----~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
-+|||||+.. ......+...+.....+..+||||..+
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 5999999942 121223333333222234688888754
No 131
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.19 E-value=4.9e-06 Score=71.92 Aligned_cols=87 Identities=17% Similarity=0.145 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchH------H-
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYID------L- 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~- 121 (362)
..+.++|.|++|+|||||++.+++.... +|+..+|+....+. .....++++.+...+....-..+... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4556889999999999999999998754 57778787644332 35677777777332221111111111 0
Q ss_pred ---HHH-hhCCceEEEEEeCCC
Q 037416 122 ---NFR-RLSRMKVLIVFDDVT 139 (362)
Q Consensus 122 ---~~~-~l~~~~~llvlDd~~ 139 (362)
... ...++++++++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 111 234789999999994
No 132
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=0.0003 Score=63.02 Aligned_cols=170 Identities=13% Similarity=0.072 Sum_probs=94.8
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHh-------
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLL------- 110 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------- 110 (362)
++|.+.+. .+.-++.+.++|+.|+||+++|..+++.+--.-... -.|..+ .-++.+.....
T Consensus 13 ~~l~~~~~-~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C---------~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 13 QNWKAGLD-AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFC---------HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHH-cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCC---------HHHHHHHcCCCCCEEEEe
Confidence 34455443 123377899999999999999999998752110000 000000 00000100000
Q ss_pred cC--CC--CCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCc
Q 037416 111 KD--KN--VIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSK 177 (362)
Q Consensus 111 ~~--~~--~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~ 177 (362)
.+ .. ..+.+..+...+ .++.-++|+|+++ +......++-.+..-+.++.+|++|.+. .+.+. .+...
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq 160 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcce
Confidence 00 00 111112222222 2344689999997 4445566665555545666666666544 44443 34567
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 178 IYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 178 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+.+.+++.+++.+.+.... .. ....++..++|.|+....+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~----~~------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKGQG----IT------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred eEeCCCCCHHHHHHHHHHcC----Cc------hHHHHHHHcCCCHHHHHHHh
Confidence 89999999999999886541 11 13467889999999765553
No 133
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.15 E-value=3.5e-05 Score=78.25 Aligned_cols=52 Identities=23% Similarity=0.364 Sum_probs=40.4
Q ss_pred CCCcccccchHHHHHHHhcc-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 27 KNQLVGVESTVDEIESLLGV-------ESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...++|.+..++.+.+.+.. ++....+++++||+|+|||.||+.++..+...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 35689999999999887743 11123468899999999999999999987544
No 134
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=0.00011 Score=66.68 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=86.4
Q ss_pred ccc-ccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHHHHHHHH
Q 037416 30 LVG-VESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 30 ~vG-R~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
++| .+...+.|.+.+.. +.-++...++|+.|+|||++|..+++.+-... .... .+.. -..++.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~-~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~--~cg~---------C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAK-NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE--PCGT---------CTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC--CCCc---------CHHHHHHhc
Confidence 556 66677778887752 22367789999999999999999998753211 0000 0000 000000000
Q ss_pred HHh-------cCCC--CCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHH
Q 037416 108 NLL-------KDKN--VIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVL 170 (362)
Q Consensus 108 ~~~-------~~~~--~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~ 170 (362)
... .+.. ..+.+..+.+.+ .+.+-++|+|+++ +......++..+..-+..+.+|+++... .+.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 000 0000 011111122221 2345689999996 4444566666666556677777777543 333
Q ss_pred hh-cCCCceEEcCCCCHHHHHHHHHH
Q 037416 171 RN-WGVSKIYEMQALEYHHALELFCR 195 (362)
Q Consensus 171 ~~-~~~~~~~~l~~l~~~e~~~ll~~ 195 (362)
+. .+....+++.+++.++..+.+..
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 32 24567899999999999888864
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.15 E-value=5.9e-05 Score=76.05 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=96.7
Q ss_pred CcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCc
Q 037416 29 QLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGG 97 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (362)
.+.|-+...+.|.+.+.- +-..++-++++||+|+|||++|+.++......| +.+. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~--------- 520 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-G--------- 520 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h---------
Confidence 467777777777665431 112355689999999999999999999865332 1111 0
Q ss_pred hHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch--------------hhhHhhccCCCC--CCCcEE
Q 037416 98 LACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN--------------QLESLIGSLDRL--TPVSRI 160 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~--------------~~~~l~~~~~~~--~~~~~i 160 (362)
.++...+ ..+ ....+.. +...-...+.+|+||+++... ....++..+... ..+..+
T Consensus 521 -~~l~~~~----vGe--se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 521 -PEILSKW----VGE--SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred -HHHhhcc----cCc--HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 0111000 000 0111222 222334568999999995321 122233333211 233345
Q ss_pred EEEeCChHHHhh-c----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH-HHHHh
Q 037416 161 IITTRNKQVLRN-W----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA-LNVLG 229 (362)
Q Consensus 161 litsr~~~~~~~-~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~-i~~~~ 229 (362)
|.||..+..... + .....+.++..+.++..+++........... ....+.+++.|.|+.-+ |..++
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~---~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE---DVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCc---cCCHHHHHHHcCCCCHHHHHHHH
Confidence 555544332221 1 2456788999999999999876653322221 12367788889887654 44443
No 136
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.14 E-value=6e-05 Score=77.05 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=41.2
Q ss_pred CCCcccccchHHHHHHHhccCC-----C-C-eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 27 KNQLVGVESTVDEIESLLGVES-----K-G-VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~-----~-~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...++|.+..++.+...+.... + . ...++++||+|+|||++|+.++..+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 3568999999999999886421 1 1 3568899999999999999999987544
No 137
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.13 E-value=8.5e-05 Score=65.20 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.+.|.|++|+|||++|+.+++.+
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999865
No 138
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.12 E-value=2.1e-05 Score=67.68 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCC
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVI 116 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 116 (362)
+..+.++......+...++++|++|+|||+|+..+++.+......++++. ..++...+-..... ..
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~---~~ 150 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN---SE 150 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh---cc
Confidence 34444444332233457899999999999999999999865533444443 22333333322211 11
Q ss_pred CchHHHHHhhCCceEEEEEeCCC
Q 037416 117 PYIDLNFRRLSRMKVLIVFDDVT 139 (362)
Q Consensus 117 ~~~~~~~~~l~~~~~llvlDd~~ 139 (362)
.....+...+. ..-+|||||+.
T Consensus 151 ~~~~~~l~~l~-~~dlLvIDDig 172 (244)
T PRK07952 151 TSEEQLLNDLS-NVDLLVIDEIG 172 (244)
T ss_pred ccHHHHHHHhc-cCCEEEEeCCC
Confidence 22233444444 34488889994
No 139
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.12 E-value=8.7e-06 Score=75.27 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc--Ccccceeee
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG--DFECSCFLE 86 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~ 86 (362)
+.+++.+..++.+...+. ..+.++++|++|+|||++|+.+++.+.. .+..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~----~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLT----IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 457778888899888886 3445889999999999999999998753 334444444
No 140
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.12 E-value=9.8e-05 Score=66.32 Aligned_cols=154 Identities=20% Similarity=0.212 Sum_probs=81.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccc-cccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVRE-ESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLS 127 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 127 (362)
.-+..++||||+|+|||.+|+.++..+.-.| +.+. ..+ .+.-........+.+....... ..-+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A~~~-----------a~~~ 210 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREAADI-----------IKKK 210 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHHHHH-----------hhcc
Confidence 3477899999999999999999999875432 1121 111 1110111222222222211100 0014
Q ss_pred CceEEEEEeCCCCch------------hh--hHhhccC--------------CCCCCCcEEEEEeCChHHHhh-c----C
Q 037416 128 RMKVLIVFDDVTCFN------------QL--ESLIGSL--------------DRLTPVSRIIITTRNKQVLRN-W----G 174 (362)
Q Consensus 128 ~~~~llvlDd~~~~~------------~~--~~l~~~~--------------~~~~~~~~ilitsr~~~~~~~-~----~ 174 (362)
+++++|+||+++... .. ..|+..+ .....+..||+|+........ + .
T Consensus 211 ~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGR 290 (413)
T PLN00020 211 GKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGR 290 (413)
T ss_pred CCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCC
Confidence 579999999994111 01 2233211 112344567777755432111 1 1
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch
Q 037416 175 VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 175 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
.... +..-+.++..+++...+.....+ ...+.+|++.+.|-|+
T Consensus 291 fDk~--i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 291 MEKF--YWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred CCce--eCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 1122 33456778888888776443322 3567778888888775
No 141
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=8.1e-05 Score=70.18 Aligned_cols=173 Identities=15% Similarity=0.112 Sum_probs=97.6
Q ss_pred CcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCch
Q 037416 29 QLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGL 98 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (362)
.+=|-++.+++|..++.- +-.-++-|++|||+|+|||.||+.++.++.-.|- -....
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~----~isAp--------- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL----SISAP--------- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE----eecch---------
Confidence 467888888888776542 1123677999999999999999999998654331 11010
Q ss_pred HHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCchh-------------hhHhhccCCCCC----CCcEE
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFNQ-------------LESLIGSLDRLT----PVSRI 160 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~~-------------~~~l~~~~~~~~----~~~~i 160 (362)
++. .. ........+.. +......-|+++++|+++.... ...++..+.... .+-.+
T Consensus 258 -eiv----SG--vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~V 330 (802)
T KOG0733|consen 258 -EIV----SG--VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPV 330 (802)
T ss_pred -hhh----cc--cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCe
Confidence 000 00 00111122222 2334456799999999953321 223333322211 12223
Q ss_pred EE---EeCChHHHhhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 161 II---TTRNKQVLRNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 161 li---tsr~~~~~~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
+| |+|.+.+.+.+ .....|.|.--+..+..+++.....+-..... =...+|++.+-|+--|
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~---~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD---FDFKQLAKLTPGFVGA 398 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC---cCHHHHHhcCCCccch
Confidence 32 55655443332 23456777777777777777766644333321 2378899999888765
No 142
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=7.6e-06 Score=74.13 Aligned_cols=96 Identities=18% Similarity=0.128 Sum_probs=59.8
Q ss_pred HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCc
Q 037416 40 IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPY 118 (362)
Q Consensus 40 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 118 (362)
+.+++..- +..+..+|+|++|+|||||++.+++.... +|+..+|+...++. +....++++.+...+.......+.
T Consensus 159 vID~l~PI-GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~ 234 (416)
T PRK09376 159 IIDLIAPI-GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPA 234 (416)
T ss_pred eeeeeccc-ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCH
Confidence 34444432 23455789999999999999999998654 68888898755442 446777777775322221111111
Q ss_pred hHH----------HHH-hhCCceEEEEEeCCC
Q 037416 119 IDL----------NFR-RLSRMKVLIVFDDVT 139 (362)
Q Consensus 119 ~~~----------~~~-~l~~~~~llvlDd~~ 139 (362)
... ... ...+++++|++|++.
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111 111 135789999999994
No 143
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.09 E-value=8.7e-05 Score=75.66 Aligned_cols=51 Identities=16% Similarity=0.366 Sum_probs=39.8
Q ss_pred CCcccccchHHHHHHHhccCC-----CC--eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVES-----KG--VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~-----~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..++|.+..++.+...+.... ++ ...++++||+|+|||++|+.+++.+...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 468999999999988876311 11 2468899999999999999999876433
No 144
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.8e-05 Score=73.89 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=86.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLS 127 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~ 127 (362)
..++-|++|||+|+|||++|+.+++...-+|-.+ ...++. ..+..++ ...+.. +...-.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv--------------kgpEL~----sk~vGeS--Er~ir~iF~kAR~ 525 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV--------------KGPELF----SKYVGES--ERAIREVFRKARQ 525 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec--------------cCHHHH----HHhcCch--HHHHHHHHHHHhh
Confidence 4477899999999999999999999865554322 001111 1111111 111111 222223
Q ss_pred CceEEEEEeCCCCchh-------------hhHhhccCCCCCCCcEEEE---EeCChHHHhh----cCCCceEEcCCCCHH
Q 037416 128 RMKVLIVFDDVTCFNQ-------------LESLIGSLDRLTPVSRIII---TTRNKQVLRN----WGVSKIYEMQALEYH 187 (362)
Q Consensus 128 ~~~~llvlDd~~~~~~-------------~~~l~~~~~~~~~~~~ili---tsr~~~~~~~----~~~~~~~~l~~l~~~ 187 (362)
.-|+++.||+++.... +..++..+.=......|+| |.|...+..- ......+.++.-+.+
T Consensus 526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 3578999999853321 3333333321222223333 4454433222 124567778888888
Q ss_pred HHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 188 HALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 188 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
...++|..++..-...+. -.+++|++.++|+--|
T Consensus 606 aR~~Ilk~~~kkmp~~~~---vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSED---VDLEELAQATEGYSGA 639 (693)
T ss_pred HHHHHHHHHHhcCCCCcc---ccHHHHHHHhccCChH
Confidence 889999988755443331 2478899999988766
No 145
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.07 E-value=8.6e-05 Score=67.42 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=83.7
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc---------------------ccceeeec
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF---------------------ECSCFLEN 87 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~~~~~~~~ 87 (362)
.++|.+....++..+.......++.+.++||+|+|||++|..+++.+.... .....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 467778888888888774444566799999999999999999999865322 1122221
Q ss_pred ccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeC
Q 037416 88 VREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr 165 (362)
...... .....+..+.+......... .+..-++++|+++.. +.-..++..+..-+..+.+|+++.
T Consensus 81 ~s~~~~-~~i~~~~vr~~~~~~~~~~~------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 81 PSDLRK-IDIIVEQVRELAEFLSESPL------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred ccccCC-CcchHHHHHHHHHHhccCCC------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 000000 00122222233222211110 245679999999733 445555555555556777777776
Q ss_pred Ch-HHHhh-cCCCceEEcCCCCHHHHH
Q 037416 166 NK-QVLRN-WGVSKIYEMQALEYHHAL 190 (362)
Q Consensus 166 ~~-~~~~~-~~~~~~~~l~~l~~~e~~ 190 (362)
.. .+.+. .+....+++.+.+.....
T Consensus 148 ~~~~il~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 148 DPSKILPTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred ChhhccchhhhcceeeecCCchHHHHH
Confidence 33 33332 234567777774444333
No 146
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.1e-05 Score=74.09 Aligned_cols=153 Identities=14% Similarity=0.196 Sum_probs=87.6
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-c-----ccceeeecccccccCCCch
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-F-----ECSCFLENVREESQRPGGL 98 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~ 98 (362)
..-++++||+.|+.++.+.|..+....+ +++|++|+|||+++.-++.++-.. - +..++.....
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g--------- 235 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG--------- 235 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH---------
Confidence 3456899999999999998875433333 478999999999999999986433 1 1122221111
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHhhC-CceEEEEEeCCCC-----------chhhhHhhccCCCCCCCcEEE-EEeC
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDLNFRRLS-RMKVLIVFDDVTC-----------FNQLESLIGSLDRLTPVSRII-ITTR 165 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~-~~~~llvlDd~~~-----------~~~~~~l~~~~~~~~~~~~il-itsr 165 (362)
. +.....-..+....++.+.+.+. ..++++++|.++. .+.-.-+.+.+.+ ...++| .||-
T Consensus 236 -~----LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~IGATT~ 308 (786)
T COG0542 236 -S----LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCIGATTL 308 (786)
T ss_pred -H----HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEEEeccH
Confidence 1 00010111112223333333332 3489999999831 2223333444442 223444 4553
Q ss_pred ChHHHhhc-------CCCceEEcCCCCHHHHHHHHHHh
Q 037416 166 NKQVLRNW-------GVSKIYEMQALEYHHALELFCRH 196 (362)
Q Consensus 166 ~~~~~~~~-------~~~~~~~l~~l~~~e~~~ll~~~ 196 (362)
++ +.... ...+.+.+...+.+++..+++..
T Consensus 309 ~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 309 DE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 32 22121 24578889999999999998863
No 147
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.06 E-value=4.7e-06 Score=68.45 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=26.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...-++++|++|+|||+||..+++.+...--.+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 4556999999999999999999998765433445554
No 148
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.06 E-value=1.5e-05 Score=62.45 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
.+.+.|+|++|+||||+++.++..+.......+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 35689999999999999999999876654233333
No 149
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.06 E-value=3.8e-05 Score=67.31 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=98.4
Q ss_pred CCcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccC-CCchHHHHHH
Q 037416 28 NQLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQR-PGGLACLRQK 104 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 104 (362)
-.++|-.++...+.+++.+ -.+...-|.|.||.|.|||.|......+. +.+.-.+.....+..-+. ...+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 4599999999999998875 22334557899999999999988888873 333444444433332221 1124444444
Q ss_pred HHHHHhcCCC----CCCchHHHHHhhC------CceEEEEEeCCCCchh------hhHhhcc-CCCCCCCcEEEEEeCCh
Q 037416 105 LLSNLLKDKN----VIPYIDLNFRRLS------RMKVLIVFDDVTCFNQ------LESLIGS-LDRLTPVSRIIITTRNK 167 (362)
Q Consensus 105 l~~~~~~~~~----~~~~~~~~~~~l~------~~~~llvlDd~~~~~~------~~~l~~~-~~~~~~~~~ilitsr~~ 167 (362)
+...+..... ..+.+..+...+. +.++++|+|+++-... +-.+... .....+-|-|.+|||-+
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 4333332222 2333444555543 2468999999852211 1222221 22234556677899855
Q ss_pred HH-------HhhcCCCceEEcCCCCHHHHHHHHHHhh
Q 037416 168 QV-------LRNWGVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 168 ~~-------~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
-+ .+..+.-.++-++.++.++-.++++..+
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 22 2222333355567888899999998776
No 150
>PRK06526 transposase; Provisional
Probab=98.06 E-value=6.6e-06 Score=71.47 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..+.++|+|++|+|||+||..++..+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 34568999999999999999999876544
No 151
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.05 E-value=7.8e-06 Score=73.63 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...++++|++|+|||+|+..+++.+......++|++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 367999999999999999999998765544455554
No 152
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.05 E-value=0.00017 Score=69.18 Aligned_cols=200 Identities=14% Similarity=0.141 Sum_probs=121.7
Q ss_pred CCCCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc--------Ccccceeeecccccc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISG--------DFECSCFLENVREES 92 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~--------~~~~~~~~~~~~~~~ 92 (362)
...+..+-+|+.|..++..++.. ..+..+.+-|.|-+|+|||..+..+.+.+.. .|. .+.+....
T Consensus 392 s~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~--- 467 (767)
T KOG1514|consen 392 SAVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLR--- 467 (767)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEccee---
Confidence 33667799999999999988875 2234568999999999999999999997641 122 22333222
Q ss_pred cCCCchHHHHHHHHHHHhcCCC-CCCchHHHHHhhC-----CceEEEEEeCCCCc-----hhhhHhhccCCCCCCCcEEE
Q 037416 93 QRPGGLACLRQKLLSNLLKDKN-VIPYIDLNFRRLS-----RMKVLIVFDDVTCF-----NQLESLIGSLDRLTPVSRII 161 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~-----~~~~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~il 161 (362)
-....+++..++..+..... ....++.+..+.. .+++++++|+++.+ +.+-.+..... .++++++
T Consensus 468 --l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLv 543 (767)
T KOG1514|consen 468 --LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLV 543 (767)
T ss_pred --ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceE
Confidence 23356677777666554333 2333333333332 35689999998533 22333332222 3556655
Q ss_pred EEeC--ChHHHhhc--------CCCceEEcCCCCHHHHHHHHHHhhhcCC-CCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 162 ITTR--NKQVLRNW--------GVSKIYEMQALEYHHALELFCRHAFKQN-HPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 162 itsr--~~~~~~~~--------~~~~~~~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
|.+= .-++...+ -....+.+.|.+..+..+++..++.+.. ......+-.+.+|+..+|-.-.|+....+
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5442 22222111 1345788999999999999998886542 22233445566677777776666655444
Q ss_pred h
Q 037416 231 F 231 (362)
Q Consensus 231 ~ 231 (362)
+
T Consensus 624 A 624 (767)
T KOG1514|consen 624 A 624 (767)
T ss_pred H
Confidence 3
No 153
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=0.00039 Score=62.96 Aligned_cols=91 Identities=15% Similarity=0.228 Sum_probs=59.9
Q ss_pred ceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037416 129 MKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN-KQVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPD 204 (362)
Q Consensus 129 ~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 204 (362)
+.-++|+|+++ +.+....++-.+..-.+++.+|++|.+ ..+.+. .+....+.+.+++.++..+.+.... .+.
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~ 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence 44588999997 555566666666555566666655544 444444 3455789999999999999987641 111
Q ss_pred CChHHHHHHHHHHcCCCchHHHHHh
Q 037416 205 VGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 205 ~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+.+...++|.|.....+.
T Consensus 208 ------~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 208 ------ADALLAEAGGAPLAALALA 226 (342)
T ss_pred ------HHHHHHHcCCCHHHHHHHH
Confidence 2345778899998554443
No 154
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4.5e-05 Score=73.25 Aligned_cols=161 Identities=18% Similarity=0.222 Sum_probs=88.4
Q ss_pred CCCcccccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHH
Q 037416 27 KNQLVGVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
+..-+|-++..+++.++|.- ..-+.++++++||+|+|||+|++.+++-+...|-....= ..++. .++.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG-GvrDE-------AEIR 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG-GVRDE-------AEIR 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC-ccccH-------HHhc
Confidence 34578888888888887753 233468999999999999999999999987776432211 11111 1100
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh----------hhHhhcc--------CCCCC---CCcEEE
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ----------LESLIGS--------LDRLT---PVSRII 161 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~----------~~~l~~~--------~~~~~---~~~~il 161 (362)
-+ +...-+.-....++ -......++-+++||+++.... ++-+.+. +.... ....+|
T Consensus 394 GH--RRTYIGamPGrIiQ-~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 394 GH--RRTYIGAMPGKIIQ-GMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred cc--cccccccCChHHHH-HHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 00 00000000001111 1122345677999999942211 2222121 11110 122344
Q ss_pred EEeCChH-H-HhhcCCCceEEcCCCCHHHHHHHHHHhhh
Q 037416 162 ITTRNKQ-V-LRNWGVSKIYEMQALEYHHALELFCRHAF 198 (362)
Q Consensus 162 itsr~~~-~-~~~~~~~~~~~l~~l~~~e~~~ll~~~~~ 198 (362)
.|+.+-+ + .+.+..-..+++.+.+.+|-.+...+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 4544322 1 22334457899999999999999888763
No 155
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.04 E-value=1.7e-05 Score=72.24 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=57.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCch---H---H-
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYI---D---L- 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~---~- 121 (362)
..+.++|+|++|+|||||++.+++.+..+ |+..+|+...++. +....++++.+...+....-..+.. . .
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45678899999999999999999987554 8878888744332 4577888887754332222111111 1 1
Q ss_pred ---H-HHhhCCceEEEEEeCCC
Q 037416 122 ---N-FRRLSRMKVLIVFDDVT 139 (362)
Q Consensus 122 ---~-~~~l~~~~~llvlDd~~ 139 (362)
. .....+++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 1 11235789999999994
No 156
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.03 E-value=7e-05 Score=71.53 Aligned_cols=58 Identities=26% Similarity=0.344 Sum_probs=43.0
Q ss_pred CCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 26 NKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
..+.++.-.+-++++.+||.. +....++++|+||+|+||||.++.+++.+. ++..-|.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 334566667788899999875 233367899999999999999999999863 3334443
No 157
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.02 E-value=0.00012 Score=68.37 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=37.4
Q ss_pred cccccchHHHHHHHhc-----cCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 30 LVGVESTVDEIESLLG-----VESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~-----~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.--.+-+.++.+||. ..+-+.+++.|+||+|+||||.++.++..+
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 4445566788888887 455668899999999999999999998875
No 158
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=9.1e-05 Score=74.55 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=39.2
Q ss_pred CCCcccccchHHHHHHHhccC-----CC-C-eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 27 KNQLVGVESTVDEIESLLGVE-----SK-G-VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~-----~~-~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...++|.+..++.+...+... ++ + ...+.++||+|+|||.||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356899999999998877631 11 1 33578999999999999999999873
No 159
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.01 E-value=9.5e-05 Score=59.79 Aligned_cols=138 Identities=16% Similarity=0.182 Sum_probs=70.8
Q ss_pred cccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC--------------------cccceeeeccccc
Q 037416 32 GVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD--------------------FECSCFLENVREE 91 (362)
Q Consensus 32 GR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------------------~~~~~~~~~~~~~ 91 (362)
|.++..+.|.+.+.. +.-++.++++|+.|+||+++|..+++.+-.. .....++.....
T Consensus 1 gq~~~~~~L~~~~~~-~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHC-TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHc-CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 556677778877762 2236678999999999999999999975221 111222210000
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCChH-
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNKQ- 168 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~~- 168 (362)
. ...-.+-.+.+...+.... ..+..=++|+|+++ +.+....++..+..-+.++.+|++|.+..
T Consensus 79 ~--~~i~i~~ir~i~~~~~~~~------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 79 K--KSIKIDQIREIIEFLSLSP------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp S--SSBSHHHHHHHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred c--chhhHHHHHHHHHHHHHHH------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 0 0001111112222111111 12345699999997 44455666655555567788888887653
Q ss_pred HHhh-cCCCceEEcCCCC
Q 037416 169 VLRN-WGVSKIYEMQALE 185 (362)
Q Consensus 169 ~~~~-~~~~~~~~l~~l~ 185 (362)
+.+. .+....+.+.+++
T Consensus 145 il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 145 ILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-HHHHTTSEEEEE----
T ss_pred ChHHHHhhceEEecCCCC
Confidence 2222 3455677777664
No 160
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.01 E-value=3.3e-05 Score=69.00 Aligned_cols=118 Identities=14% Similarity=0.181 Sum_probs=64.9
Q ss_pred cccchHHHHHHHhccCC--CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHH
Q 037416 32 GVESTVDEIESLLGVES--KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNL 109 (362)
Q Consensus 32 GR~~el~~l~~~l~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (362)
+|........+++.... ...+-+.|+|+.|+|||+|+..+++.+......+.|+. ..++...+....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHH
Confidence 45555555555555321 23457899999999999999999999865433344443 113333443332
Q ss_pred hcCCCCCCchHHHHHhhCCceEEEEEeCCC--Cchhhh--HhhccC-CCC-CCCcEEEEEeCC
Q 037416 110 LKDKNVIPYIDLNFRRLSRMKVLIVFDDVT--CFNQLE--SLIGSL-DRL-TPVSRIIITTRN 166 (362)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~~llvlDd~~--~~~~~~--~l~~~~-~~~-~~~~~ilitsr~ 166 (362)
..+ ........+. +.-||||||+. ....|. .++..+ ... ..+..+|+||.-
T Consensus 204 ~~~-----~~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SDG-----SVKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hcC-----cHHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 211 2233333333 44589999994 344443 233322 211 244567778753
No 161
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.01 E-value=4.7e-05 Score=77.05 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=39.4
Q ss_pred CcccccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 29 QLVGVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
..+|.+...+.+.+++.. +....+.+.++||+|+|||++|+.++..+...|
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 478888888888776542 223455799999999999999999999875443
No 162
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=6.9e-05 Score=71.81 Aligned_cols=156 Identities=16% Similarity=0.095 Sum_probs=86.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
..+.|.|.|+.|+|||+|++.+++.+.....+.+-+. .+.......+..++..+... +...+.-.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v--~Cs~l~~~~~e~iQk~l~~v-------------fse~~~~~ 494 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIV--SCSTLDGSSLEKIQKFLNNV-------------FSEALWYA 494 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEE--echhccchhHHHHHHHHHHH-------------HHHHHhhC
Confidence 4567999999999999999999999874432222222 21111122344444333222 23345567
Q ss_pred eEEEEEeCCCCchh---------------hhHhh----ccCCCCCCCcEEEEEeCChHH-----HhhcCCCceEEcCCCC
Q 037416 130 KVLIVFDDVTCFNQ---------------LESLI----GSLDRLTPVSRIIITTRNKQV-----LRNWGVSKIYEMQALE 185 (362)
Q Consensus 130 ~~llvlDd~~~~~~---------------~~~l~----~~~~~~~~~~~ilitsr~~~~-----~~~~~~~~~~~l~~l~ 185 (362)
|-+|+|||++.... +..++ ..+........+|.|.....- ........+..|+++.
T Consensus 495 PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 495 PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 89999999942211 22222 112212222345555543311 1111234578899999
Q ss_pred HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc
Q 037416 186 YHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP 222 (362)
Q Consensus 186 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 222 (362)
..+..+++........ . ......++-+...|+|+-
T Consensus 575 ~~~R~~IL~~~~s~~~-~-~~~~~dLd~ls~~TEGy~ 609 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNL-S-DITMDDLDFLSVKTEGYL 609 (952)
T ss_pred hhHHHHHHHHHHHhhh-h-hhhhHHHHHHHHhcCCcc
Confidence 9988888876653322 1 122344555888888764
No 163
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.01 E-value=0.00043 Score=59.25 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=121.8
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeeecccc-----------
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLENVRE----------- 90 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~----------- 90 (362)
+.+.++++....|..... .+..+...+|||+|.||-|.+..+.+++.+- -+..-|.+....
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 447778877777777654 3457788999999999999999998875331 111112211110
Q ss_pred -----cccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceE-EEEEeCCCC--chhhhHhhccCCCCCCCcEEEE
Q 037416 91 -----ESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKV-LIVFDDVTC--FNQLESLIGSLDRLTPVSRIII 162 (362)
Q Consensus 91 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-llvlDd~~~--~~~~~~l~~~~~~~~~~~~ili 162 (362)
.+.-...-.-+.+.++..+.+..+.. ....+++ ++|+-.+++ .++-..+...+..-...|++|+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl 162 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLIL 162 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEE
Confidence 01101112334444444444333211 1122344 555555542 2333444444433456788887
Q ss_pred EeCCh--HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC------
Q 037416 163 TTRNK--QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE------ 234 (362)
Q Consensus 163 tsr~~--~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~------ 234 (362)
.+.+. -+.+--+....++++..+.+|....+.......+...+ .+.+.+|++.++||-.-.-.+...++-
T Consensus 163 ~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~ 240 (351)
T KOG2035|consen 163 VCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT 240 (351)
T ss_pred EecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence 66432 11222234457999999999999999988765553332 688999999999986544333333321
Q ss_pred -----CCHHHHHHHHHHHhc
Q 037416 235 -----REKEVWESAINKLQR 249 (362)
Q Consensus 235 -----~~~~~~~~~~~~l~~ 249 (362)
.+..+|+.+..++.+
T Consensus 241 a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 241 ANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccCCCCCCccHHHHHHHHHH
Confidence 246788888877544
No 164
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.00 E-value=8.2e-05 Score=71.84 Aligned_cols=48 Identities=25% Similarity=0.458 Sum_probs=38.9
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.-+.++|.+..++.+...+. ......++|+|++|+|||++|+.+.+..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~--~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALC--GPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 33458999999999998765 3345568899999999999999998754
No 165
>PRK09183 transposase/IS protein; Provisional
Probab=97.95 E-value=1.9e-05 Score=69.05 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...++|+|++|+|||+|+..++......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999998875433
No 166
>PRK06921 hypothetical protein; Provisional
Probab=97.93 E-value=1.6e-05 Score=69.75 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 86 (362)
....++++|++|+|||+|+..+++.+... ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678999999999999999999987654 33445554
No 167
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.1e-05 Score=70.10 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=23.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.++|.++||+|.|||+|++.+++++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 6899999999999999999999986
No 168
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00048 Score=62.18 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=50.2
Q ss_pred ceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCChH-HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037416 129 MKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNKQ-VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPD 204 (362)
Q Consensus 129 ~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 204 (362)
++-++++|+++ +...-..++..+.....++.+|++|.+.. +.+. .+....+.+.+++.++..+.+.... ...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~~ 188 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----VAE 188 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----CCc
Confidence 34456678886 33444444444333334566777776653 3322 2345678899999999998886541 111
Q ss_pred CChHHHHHHHHHHcCCCchHH
Q 037416 205 VGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 205 ~~~~~~~~~i~~~~~G~Pl~i 225 (362)
. . .....++|.|+..
T Consensus 189 ----~-~-~~l~~~~g~p~~~ 203 (325)
T PRK08699 189 ----P-E-ERLAFHSGAPLFD 203 (325)
T ss_pred ----H-H-HHHHHhCCChhhh
Confidence 1 1 1235678999643
No 169
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.92 E-value=0.0011 Score=60.10 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=36.9
Q ss_pred ccchHHHHHHHhccCC-CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 33 VESTVDEIESLLGVES-KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 33 R~~el~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
|+...+.|.+.+...+ ..+-+|+|.|+=|+|||++.+.+.+.+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3455667777776533 568899999999999999999999988766
No 170
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.91 E-value=0.00017 Score=72.61 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=85.3
Q ss_pred CCcccccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 28 NQLVGVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
...+|-++..+++.+++.. .......++++||+|+|||++++.++..+...|....+ . . ..+...+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-~---~----~~d~~~i~g 393 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-G---G----VRDEAEIRG 393 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-C---C----CCCHHHhcc
Confidence 4589999999999887763 12345679999999999999999999877544322111 1 1 111111110
Q ss_pred HHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh------hhHhhccCCC---------------CCCCcEEEE
Q 037416 104 KLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ------LESLIGSLDR---------------LTPVSRIII 162 (362)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~~---------------~~~~~~ili 162 (362)
.- .. ............+... ...+.+++||+++.... ...++..+.. .-.+..+|.
T Consensus 394 ~~-~~-~~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 394 HR-RT-YIGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred ch-hc-cCCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 00 00 0001011111222222 22344788999952211 2333332211 013344555
Q ss_pred EeCChHHHhh-cCCCceEEcCCCCHHHHHHHHHHhh
Q 037416 163 TTRNKQVLRN-WGVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 163 tsr~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
|+....+.+. .+....+.+.+++.++..++....+
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6643322211 2334578999999999999888766
No 171
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.88 E-value=2.9e-05 Score=67.56 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
...-++++|++|+|||+||..+++++....-.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 455689999999999999999999987432333333
No 172
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.88 E-value=3.5e-05 Score=65.69 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.++|.|++|+|||+|+..+...+...|..++.++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4779999999999999999999988997776665
No 173
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00058 Score=63.54 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
.....+++.||+|+|||+||.+++.. +.|+++-.+.. .... ..+-..-+..+-.. +.+.-+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp-e~mi--G~sEsaKc~~i~k~-------------F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP-EDMI--GLSESAKCAHIKKI-------------FEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh-HHcc--CccHHHHHHHHHHH-------------HHHhhcC
Confidence 34567889999999999999999885 66776665541 1111 11111112222111 2223334
Q ss_pred ceEEEEEeCCCCchh------------hhHhhccCCCCCCCc-E--EEEEeCChHHHhhcC----CCceEEcCCCCH-HH
Q 037416 129 MKVLIVFDDVTCFNQ------------LESLIGSLDRLTPVS-R--IIITTRNKQVLRNWG----VSKIYEMQALEY-HH 188 (362)
Q Consensus 129 ~~~llvlDd~~~~~~------------~~~l~~~~~~~~~~~-~--ilitsr~~~~~~~~~----~~~~~~l~~l~~-~e 188 (362)
.=-+||+||++..-+ +..++-.+...++.+ + |+-||....++..|+ ....+.++.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 446899999943322 344444444333332 3 444666666666664 345788999987 66
Q ss_pred HHHHHHHh
Q 037416 189 ALELFCRH 196 (362)
Q Consensus 189 ~~~ll~~~ 196 (362)
..+.++..
T Consensus 678 ~~~vl~~~ 685 (744)
T KOG0741|consen 678 LLEVLEEL 685 (744)
T ss_pred HHHHHHHc
Confidence 66666543
No 174
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00099 Score=61.07 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=68.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
.|-.++|||+|+|||+++...++.+. +-++-....... .-.+ ++.++.... .+
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~----~n~d-Lr~LL~~t~------------------~k 287 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVK----LDSD-LRHLLLATP------------------NK 287 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeecccc----CcHH-HHHHHHhCC------------------CC
Confidence 56789999999999999999999763 333333222211 1112 444444322 34
Q ss_pred EEEEEeCCCCchh--------------------hhHhhcc---CCCCCCCcEEEE-EeCCh-----HHHhhcCCCceEEc
Q 037416 131 VLIVFDDVTCFNQ--------------------LESLIGS---LDRLTPVSRIII-TTRNK-----QVLRNWGVSKIYEM 181 (362)
Q Consensus 131 ~llvlDd~~~~~~--------------------~~~l~~~---~~~~~~~~~ili-tsr~~-----~~~~~~~~~~~~~l 181 (362)
-+||++|++.--+ +--++.. +-..+..-+||| ||... .+.....-...+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 5888888842211 0111111 111222345555 55433 22222122356888
Q ss_pred CCCCHHHHHHHHHHhhhc
Q 037416 182 QALEYHHALELFCRHAFK 199 (362)
Q Consensus 182 ~~l~~~e~~~ll~~~~~~ 199 (362)
..=+.+....|+.+.+..
T Consensus 368 gyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGI 385 (457)
T ss_pred CCCCHHHHHHHHHHhcCC
Confidence 888999888999888744
No 175
>PRK04132 replication factor C small subunit; Provisional
Probab=97.84 E-value=0.00038 Score=69.91 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=96.1
Q ss_pred EEc--CCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEE
Q 037416 56 IWG--ISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVL 132 (362)
Q Consensus 56 I~G--~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l 132 (362)
+.| |.++||||+|..+++++.. .+...+.-.++.+ ..+. +..+.+........+. ...+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd----~rgi-d~IR~iIk~~a~~~~~----------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD----ERGI-NVIREKVKEFARTKPI----------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC----cccH-HHHHHHHHHHHhcCCc----------CCCCCEE
Confidence 458 9999999999999998633 3333333322221 1222 2333333332211110 0123479
Q ss_pred EEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChH
Q 037416 133 IVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYE 208 (362)
Q Consensus 133 lvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~ 208 (362)
+|+|+++.. ++...++..+..-+..+++|+++.+. .+.+. .+....+++.+++.++..+.+...+...+. ...+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCH
Confidence 999999744 45666666665545677777777654 22222 345678999999999999888766533221 1336
Q ss_pred HHHHHHHHHcCCCchHHHHHhh
Q 037416 209 ELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 209 ~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
+.+..|+..++|.+.....+..
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 7889999999999866544333
No 176
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.84 E-value=0.0003 Score=59.66 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=91.8
Q ss_pred CCcccccchHHH---HHHHhccC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 28 NQLVGVESTVDE---IESLLGVE----SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 28 ~~~vGR~~el~~---l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
+.+||.+..... +...|... .=.++-|+.+||+|+|||.+|+.+++..+..+ ..... .+
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka----------t~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA----------TE 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech----------HH
Confidence 457887766544 45566532 12378899999999999999999999754321 11100 00
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhh-CCceEEEEEeCCCCch--------------hhhHhhccCCCC--CCCcEEEEE
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRL-SRMKVLIVFDDVTCFN--------------QLESLIGSLDRL--TPVSRIIIT 163 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~~--------------~~~~l~~~~~~~--~~~~~ilit 163 (362)
+ +....+. ....+..+.... +.-||++.+|+++... ....++..+.-. ..|...|..
T Consensus 187 l---iGehVGd---gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 187 L---IGEHVGD---GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred H---HHHHhhh---HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 0 1011111 112222233332 3468999999984322 133444443222 223333333
Q ss_pred eCChHHHhh-c--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc
Q 037416 164 TRNKQVLRN-W--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP 222 (362)
Q Consensus 164 sr~~~~~~~-~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 222 (362)
|...+++.. . .....++..--+.+|..++++..+..-..+ .+...+.++..++|..
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp---v~~~~~~~~~~t~g~S 319 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP---VDADLRYLAAKTKGMS 319 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc---cccCHHHHHHHhCCCC
Confidence 333322222 1 233456676677888888888776332222 2334778888888754
No 177
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.82 E-value=5.9e-05 Score=72.48 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=50.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhh-
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRL- 126 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l- 126 (362)
.+..+++.++|++|.||||||.-++++. .+.+.-.|+.. ..+...+-..+...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GYsVvEINASD----eRt~~~v~~kI~~avq~~s-----------~l~ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GYSVVEINASD----ERTAPMVKEKIENAVQNHS-----------VLD 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----CceEEEecccc----cccHHHHHHHHHHHHhhcc-----------ccc
Confidence 3557899999999999999999999863 34444333333 4555556556555444333 22
Q ss_pred -CCceEEEEEeCCC
Q 037416 127 -SRMKVLIVFDDVT 139 (362)
Q Consensus 127 -~~~~~llvlDd~~ 139 (362)
.++|.++|+|+++
T Consensus 384 adsrP~CLViDEID 397 (877)
T KOG1969|consen 384 ADSRPVCLVIDEID 397 (877)
T ss_pred cCCCcceEEEeccc
Confidence 3689999999996
No 178
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00021 Score=67.49 Aligned_cols=153 Identities=18% Similarity=0.249 Sum_probs=83.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRM 129 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~ 129 (362)
+.-|+++||+|+|||-||+.+++...-+| +. +. . .+ +++.+..+. ...+.. +.+.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is-VK-----G---PE----LlNkYVGES--ErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS-VK-----G---PE----LLNKYVGES--ERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee-ec-----C---HH----HHHHHhhhH--HHHHHHHHHHhhcCC
Confidence 56799999999999999999999865554 21 00 0 11 222222222 112222 33344467
Q ss_pred eEEEEEeCCCCchh-------------hhHhhccCCCC--CCCcEEEE-EeCChHH----HhhcCCCceEEcCCCCHHHH
Q 037416 130 KVLIVFDDVTCFNQ-------------LESLIGSLDRL--TPVSRIII-TTRNKQV----LRNWGVSKIYEMQALEYHHA 189 (362)
Q Consensus 130 ~~llvlDd~~~~~~-------------~~~l~~~~~~~--~~~~~ili-tsr~~~~----~~~~~~~~~~~l~~l~~~e~ 189 (362)
|++|+||+++.... ...++..+.-. ..+.-||. |.|.+-+ +........+-++.-+.+|.
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 99999999953321 33444333211 23333443 4454322 22223345566777788889
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHHHHcC--CCchH
Q 037416 190 LELFCRHAFKQNHPDVGYEELSSKAMNYAQ--GVPLA 224 (362)
Q Consensus 190 ~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~--G~Pl~ 224 (362)
.+++...... ..++...+-.++.|+.... |+.-|
T Consensus 685 ~~ILK~~tkn-~k~pl~~dVdl~eia~~~~c~gftGA 720 (802)
T KOG0733|consen 685 VAILKTITKN-TKPPLSSDVDLDEIARNTKCEGFTGA 720 (802)
T ss_pred HHHHHHHhcc-CCCCCCcccCHHHHhhcccccCCchh
Confidence 9999877743 3333233334666766544 65543
No 179
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=7.6e-05 Score=73.43 Aligned_cols=114 Identities=17% Similarity=0.274 Sum_probs=73.4
Q ss_pred CCcccccchHHHHHHHhcc-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 28 NQLVGVESTVDEIESLLGV-------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
..++|.+.-+..+.+.+.. .+......+..||+|||||-||+.++..+...-+..+-+. ..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-----------MSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-----------MSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-----------hHH
Confidence 4689999999999888763 1112346677999999999999999998765434444333 112
Q ss_pred HHH-HHHHHHhcCCC---CCCchHHHHHhhCCceE-EEEEeCCC--CchhhhHhhccCC
Q 037416 101 LRQ-KLLSNLLKDKN---VIPYIDLNFRRLSRMKV-LIVFDDVT--CFNQLESLIGSLD 152 (362)
Q Consensus 101 ~~~-~l~~~~~~~~~---~~~~~~~~~~~l~~~~~-llvlDd~~--~~~~~~~l~~~~~ 152 (362)
+.+ .-...+....+ ....-..+-+..+.+|+ +|.||+++ +.+.+.-|+..+.
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 222 22233333333 22233446677777876 88899996 5555666666554
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00017 Score=65.71 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
+++.|+|.|++|+||||++..++..+...-..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 457899999999999999999998876442233333
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.81 E-value=0.00027 Score=62.99 Aligned_cols=49 Identities=14% Similarity=0.094 Sum_probs=35.9
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
++.++=.......+..++.. .+.|.|.|++|+|||++++.++..+...+
T Consensus 44 d~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 33455555566667777752 34589999999999999999999876443
No 182
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.79 E-value=2.5e-05 Score=61.51 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 31 VGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
||+...++++.+.+..-......|.|+|++|+||+++|+.+...-.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5777777887777765445566789999999999999998887643
No 183
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.78 E-value=2.6e-05 Score=64.94 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=60.1
Q ss_pred cccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh--hcCcccceeeeccccccc----CCCchHHHHH--
Q 037416 32 GVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI--SGDFECSCFLENVREESQ----RPGGLACLRQ-- 103 (362)
Q Consensus 32 GR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-- 103 (362)
.+..+.....+++. ...++++.|++|+|||.||..++.+. ...|+..++....-.... .+.+..+-..
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 45556666777665 45689999999999999999998764 455666666653332111 0111111111
Q ss_pred --HHHHHHhcCCCCCCchHHH----------HHhhCCc---eEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC
Q 037416 104 --KLLSNLLKDKNVIPYIDLN----------FRRLSRM---KVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 104 --~l~~~~~~~~~~~~~~~~~----------~~~l~~~---~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
.+...+..-. .....+.+ ...++++ ..+||+|++. ...++..++.. .+.+|+++++.-.
T Consensus 80 ~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 80 LRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp THHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 1111111100 11122221 2233443 4699999995 44456665544 5688999998753
No 184
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.00025 Score=59.44 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=67.6
Q ss_pred CcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH
Q 037416 29 QLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
.++|-+...+.|.+.-.. .+-..--|.+||..|+|||+|++.+...+.......+-+. ... ..++..+...+
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~----k~d-l~~Lp~l~~~L- 134 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD----KED-LATLPDLVELL- 134 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc----HHH-HhhHHHHHHHH-
Confidence 478988888887664332 1122345899999999999999999999877765544443 111 11222222222
Q ss_pred HHHhcCCCCCCchHHHHHhhCCceEEEEEeCC--C-CchhhhHhhccC----CCCCCCcEEEEEeCCh
Q 037416 107 SNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDV--T-CFNQLESLIGSL----DRLTPVSRIIITTRNK 167 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~--~-~~~~~~~l~~~~----~~~~~~~~ilitsr~~ 167 (362)
.....++++..||+ + .......+...+ ...+.+.-+..||...
T Consensus 135 ------------------r~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 135 ------------------RARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred ------------------hcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 12357899999999 2 333444444332 3233444444566433
No 185
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00028 Score=67.83 Aligned_cols=151 Identities=18% Similarity=0.122 Sum_probs=83.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRM 129 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~ 129 (362)
..-|.+|||+|+|||.||..++....-. |+. .. -.+++.+.... ..+.... +.+.-..+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-vK--------GPElL~KyIGa------SEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-VK--------GPELLSKYIGA------SEQNVRDLFERAQSAK 760 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-ec--------CHHHHHHHhcc------cHHHHHHHHHHhhccC
Confidence 4468999999999999999999864322 222 11 11222222111 1122333 34444568
Q ss_pred eEEEEEeCCCCchh-------------hhHhhccCCC--CCCCcEEE-EEeCChHHHhh----cCCCceEEcCCCCHHHH
Q 037416 130 KVLIVFDDVTCFNQ-------------LESLIGSLDR--LTPVSRII-ITTRNKQVLRN----WGVSKIYEMQALEYHHA 189 (362)
Q Consensus 130 ~~llvlDd~~~~~~-------------~~~l~~~~~~--~~~~~~il-itsr~~~~~~~----~~~~~~~~l~~l~~~e~ 189 (362)
||++.||++++... ...++..+.- .-.|.-|+ .|||.+-+.+. ......+.-+.-++.+.
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 99999999965432 3344444321 12343444 36675422221 11222333455567777
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 190 LELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 190 ~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
.+++....-.-..+ ..-.++.++..++|...|
T Consensus 841 l~il~~ls~s~~~~---~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 841 LEILQVLSNSLLKD---TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHhhccCCc---cccchHHHhhhcCCCchh
Confidence 78877654222222 234588899999998876
No 186
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.77 E-value=0.00015 Score=65.69 Aligned_cols=99 Identities=16% Similarity=0.147 Sum_probs=60.2
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHHHHHHHHHHhcCCC
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN 114 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (362)
...++.+.+..-. ..+.++|+|++|+|||||++.+++.+..+. +..+++.. .........++++.+...+.....
T Consensus 119 ~~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l---IgER~~EV~df~~~i~~~Vvast~ 194 (380)
T PRK12608 119 LSMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL---IDERPEEVTDMRRSVKGEVYASTF 194 (380)
T ss_pred hhHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE---ecCCCCCHHHHHHHHhhhEEeecC
Confidence 4445666665433 334568999999999999999999876543 33323322 233366778888887665443321
Q ss_pred CCCc---hH---H---HHH--hhCCceEEEEEeCC
Q 037416 115 VIPY---ID---L---NFR--RLSRMKVLIVFDDV 138 (362)
Q Consensus 115 ~~~~---~~---~---~~~--~l~~~~~llvlDd~ 138 (362)
.... .. . ..+ .-.+++++|++|++
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 1111 11 1 111 12478999999998
No 187
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.76 E-value=0.00018 Score=73.28 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=40.0
Q ss_pred CCCcccccchHHHHHHHhccC-----CCC--eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 27 KNQLVGVESTVDEIESLLGVE-----SKG--VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~-----~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.++|.+..++.+...+... .+. ...++++||+|+|||+||+.+++.+...
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 356899999999998877521 111 2356799999999999999999987443
No 188
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.76 E-value=0.0011 Score=63.91 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=43.8
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....++|+...++++.+.+.........|.|+|++|+|||++|+.+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 456799999999999998877556677799999999999999999988744
No 189
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.76 E-value=7.7e-05 Score=62.56 Aligned_cols=108 Identities=9% Similarity=0.075 Sum_probs=57.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceE
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKV 131 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 131 (362)
.+++|.|++|+||||++..++..+.......++...-. ... . ... ...+..+.....+...-.+.+...+...+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~-~E~-~--~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP-IEF-V--HES-KRSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC-ccc-c--ccC-ccceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 47899999999999999998887754433333332110 000 0 000 001111100011111222336666777788
Q ss_pred EEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 132 LIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 132 llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
++++|++.+.+.......... .+..++.|+-..
T Consensus 77 ~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~ 109 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAE---TGHLVMSTLHTN 109 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCC
Confidence 999999976666555443322 233466666544
No 190
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.75 E-value=0.00038 Score=69.64 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=39.1
Q ss_pred CCcccccchHHHHHHHhccC-----C-CC-eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVE-----S-KG-VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~-----~-~~-~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++|.+..++.+.+.+... . .+ ...+.++||+|+|||.+|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999998887631 1 11 34688999999999999999999873
No 191
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.74 E-value=0.0012 Score=59.95 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.5
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+.++|+...+.++.+.+.........|+|+|++|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 45899999999998887764455667899999999999999988754
No 192
>PHA02244 ATPase-like protein
Probab=97.74 E-value=0.0001 Score=66.50 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=33.9
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+..|+|+...+......+..--.....|.|+|++|+|||+||+.+++.+.
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678877766544332222112233478999999999999999999854
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0007 Score=65.23 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=43.3
Q ss_pred CCcccccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 28 NQLVGVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
+.-+|-++..+++.+++.- ++.+.+++.++||+|||||++++.++..+...|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 3568888888888887753 445678999999999999999999999987665
No 194
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.71 E-value=0.00094 Score=59.96 Aligned_cols=48 Identities=23% Similarity=0.074 Sum_probs=35.2
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCC-CChHHHHHHHHHHcCCCchHH
Q 037416 178 IYEMQALEYHHALELFCRHAFKQNHPD-VGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 178 ~~~l~~l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~G~Pl~i 225 (362)
++++++++.+|+..++.-.....-... ...+...+++...++|||.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987663333222 334556777777789999754
No 195
>PHA00729 NTP-binding motif containing protein
Probab=97.70 E-value=0.00016 Score=61.09 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+...++|+|++|+||||||..+++++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455799999999999999999999864
No 196
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00076 Score=66.17 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=97.9
Q ss_pred CCcccccchHHHHHH---Hhcc-------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCc
Q 037416 28 NQLVGVESTVDEIES---LLGV-------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGG 97 (362)
Q Consensus 28 ~~~vGR~~el~~l~~---~l~~-------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (362)
..+.|-++..++|.+ +|.. +..-++-|.|+||+|+|||-||+.++-... +=|+. .+
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vS----- 376 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VS----- 376 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----ec-----
Confidence 346776665555555 4432 112267799999999999999999998632 22222 11
Q ss_pred hHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCch-----------------hhhHhhccCCCCC--CC
Q 037416 98 LACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFN-----------------QLESLIGSLDRLT--PV 157 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~-----------------~~~~l~~~~~~~~--~~ 157 (362)
..++.+-+ .. .. ...... +...-...|++|.+|+++... .+..++..+.-.. .+
T Consensus 377 GSEFvE~~----~g-~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 377 GSEFVEMF----VG-VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred hHHHHHHh----cc-cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 11222211 11 10 112222 333334578999999884221 2344443332221 22
Q ss_pred cEEEEEeCChHH-----HhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHH
Q 037416 158 SRIIITTRNKQV-----LRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLAL 225 (362)
Q Consensus 158 ~~ilitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i 225 (362)
.-++.+|...+. .........+.++.-+.....++|.-++.....+ ....++.+ |+..+.|++-|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 223334433222 2222344578888888899999999887555444 23344455 999999999884
No 197
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.70 E-value=0.00044 Score=64.71 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.++.++|++|+||||++..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999887654
No 198
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.70 E-value=0.00031 Score=74.78 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
-++-|+++||+|+|||.||+.++...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 46679999999999999999999974
No 199
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.70 E-value=5.1e-05 Score=68.37 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCCCCCCCcccccchHHHHHHHhccC----CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGVE----SKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~~----~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.++...+.++|-++.+.++.+++... +...++++|+||+|+||||||..++..+..
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45555667999999999999988752 234688999999999999999999998744
No 200
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.70 E-value=0.00071 Score=61.37 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 30 LVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
++|+...++++.+.+.........|+|+|++|+||+++|+.+...-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888777776544556668999999999999999887754
No 201
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.70 E-value=0.00077 Score=65.59 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=42.9
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+.++|+...++++.+.+.........|.|+|++|+|||++|+.+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 3456799999999999888775445566789999999999999999988643
No 202
>PRK14974 cell division protein FtsY; Provisional
Probab=97.69 E-value=0.00072 Score=61.09 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++.+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999877654
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.69 E-value=0.0031 Score=63.35 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=40.0
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++|+...+..+.+.+.........|.|+|++|+|||++|+.+.....
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 4699999999998776664344556789999999999999999988643
No 204
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.67 E-value=0.00056 Score=67.72 Aligned_cols=151 Identities=13% Similarity=0.094 Sum_probs=79.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchH-HHHHhhCCc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYID-LNFRRLSRM 129 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~ 129 (362)
++-++|+|++|+|||++++.++......| +.+. . .++...+. .. ....+. .+.......
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~----------~~~~~~~~-----g~-~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-G----------SDFVEMFV-----GV-GASRVRDMFEQAKKAA 244 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-h----------HHhHHhhh-----cc-cHHHHHHHHHHHHhcC
Confidence 34599999999999999999998764332 1111 0 01111000 00 001111 122233346
Q ss_pred eEEEEEeCCCCch----------------hhhHhhccCCCC--CCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCH
Q 037416 130 KVLIVFDDVTCFN----------------QLESLIGSLDRL--TPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEY 186 (362)
Q Consensus 130 ~~llvlDd~~~~~----------------~~~~l~~~~~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~ 186 (362)
|++|++|+++... .+..++..+... ..+..+|.+|..++.... ......+.++..+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 8999999995431 122232222211 123344445554432221 12346788888888
Q ss_pred HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 187 HHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 187 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
++..+++...+........ .....+++.+.|+.-+
T Consensus 325 ~~R~~Il~~~~~~~~l~~~---~d~~~la~~t~G~sga 359 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGA 359 (644)
T ss_pred HHHHHHHHHHhhcCCCCCc---CCHHHHHhhCCCCCHH
Confidence 8888888877644332221 1245677777775444
No 205
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.63 E-value=4.7e-05 Score=58.34 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999986
No 206
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00041 Score=62.73 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC--
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-- 114 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 114 (362)
+.++...|-.+--...+++|-|.+|+|||||..+++.++.... .+.|++. .++...+. --...+....+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-------EES~~Qik-lRA~RL~~~~~~l 149 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-------EESLQQIK-LRADRLGLPTNNL 149 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-------CcCHHHHH-HHHHHhCCCccce
Confidence 3444554432112367899999999999999999999987665 6666651 12222221 22233332222
Q ss_pred ---CCCchHHHHHhhC-CceEEEEEeCC
Q 037416 115 ---VIPYIDLNFRRLS-RMKVLIVFDDV 138 (362)
Q Consensus 115 ---~~~~~~~~~~~l~-~~~~llvlDd~ 138 (362)
...+++.+...+. .+|-++|+|.+
T Consensus 150 ~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 150 YLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred EEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 3344555555544 57899999998
No 207
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.61 E-value=3.3e-05 Score=60.86 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+|+|++|+|||+|++.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 208
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.60 E-value=0.00015 Score=67.92 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 5 LTNDVVNHILKRLDEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 5 ~~~~i~~~~~~~~~~~~~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.+.+.++.+...+. +.++||+..++.+...+.. ...|+|.|++|+|||++|+.++.....
T Consensus 6 ~~~~~i~~l~~~l~---------~~i~gre~vI~lll~aala----g~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 6 LLAERISRLSSALE---------KGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HHHHHHHHHHHHHh---------hhccCcHHHHHHHHHHHcc----CCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 34444555555555 4599999999999998863 334899999999999999999997643
No 209
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00074 Score=62.96 Aligned_cols=147 Identities=18% Similarity=0.184 Sum_probs=76.7
Q ss_pred cchHHHHHHHhccCC------CC-eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH
Q 037416 34 ESTVDEIESLLGVES------KG-VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 34 ~~el~~l~~~l~~~~------~~-~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
.+|++++.++|..+. ++ ++-|+++||+|.|||-||+.++-.. +.-+|+....+ +.+++
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----~VPFF~~sGSE-------FdEm~---- 377 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----GVPFFYASGSE-------FDEMF---- 377 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----CCCeEeccccc-------hhhhh----
Confidence 346666677776321 22 6779999999999999999998763 33334431111 11111
Q ss_pred HHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhhHhhccCCCCCCCcEEEE---EeCChHHH
Q 037416 107 SNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLESLIGSLDRLTPVSRIII---TTRNKQVL 170 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~~~~~~ili---tsr~~~~~ 170 (362)
........-+.+...-..-|++|.+|+++... .+..++..+.-...+.-||| |.+.+.+.
T Consensus 378 ----VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 378 ----VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred ----hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 00101111112333334568999999994321 24444443332222222333 33333332
Q ss_pred hhc----CCCceEEcCCCCHHHHHHHHHHhhhc
Q 037416 171 RNW----GVSKIYEMQALEYHHALELFCRHAFK 199 (362)
Q Consensus 171 ~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~ 199 (362)
+-+ .....+.++.-+..-..+++..++..
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 221 23456777777777777777776644
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.59 E-value=0.00042 Score=63.65 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=53.3
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC--
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-- 114 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 114 (362)
+..|...|..+=....++.|.|++|+|||||+.+++..+......++|+.. ..+...+.... ..+....+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~-------EEs~~qi~~Ra-~rlg~~~~~l 139 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG-------EESPEQIKLRA-DRLGISTENL 139 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC-------CcCHHHHHHHH-HHcCCCcccE
Confidence 344555554322346789999999999999999999887655445666641 11222222221 22221111
Q ss_pred ---CCCchHHHHHhhC-CceEEEEEeCC
Q 037416 115 ---VIPYIDLNFRRLS-RMKVLIVFDDV 138 (362)
Q Consensus 115 ---~~~~~~~~~~~l~-~~~~llvlDd~ 138 (362)
....++.+.+.+. .++-++|+|.+
T Consensus 140 ~l~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 140 YLLAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EEEccCcHHHHHHHHHhcCCcEEEEcch
Confidence 1223344444433 36778999998
No 211
>PRK06696 uridine kinase; Validated
Probab=97.58 E-value=0.00013 Score=62.54 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred cccchHHHHHHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 32 GVESTVDEIESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 32 GR~~el~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.|.+.+++|.+.+.+ ..+.+.+|+|.|++|+||||||+.++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 366677777776654 34567899999999999999999999988644
No 212
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.001 Score=64.17 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=83.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSR 128 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~ 128 (362)
..+.+.++||+|+|||.||+.++......|..+..- ++...++.. ....+.. +......
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--------------~l~sk~vGe------sek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--------------ELLSKWVGE------SEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--------------HHhccccch------HHHHHHHHHHHHHcC
Confidence 456899999999999999999999655443221111 111111000 0111122 2333346
Q ss_pred ceEEEEEeCCCCch-------------hhhHhhccCCCC--CCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCHHH
Q 037416 129 MKVLIVFDDVTCFN-------------QLESLIGSLDRL--TPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEYHH 188 (362)
Q Consensus 129 ~~~llvlDd~~~~~-------------~~~~l~~~~~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e 188 (362)
.+++|++|+++... ....++..+... ..+..+|.+|..+..... ......+.+++-+..+
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 78999999993221 233344333222 233334444443322221 1335578899999999
Q ss_pred HHHHHHHhhhcCCCCCCChHHHHHHHHHHcCC
Q 037416 189 ALELFCRHAFKQNHPDVGYEELSSKAMNYAQG 220 (362)
Q Consensus 189 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 220 (362)
..+.|.........+ ....-..+.+++.+.|
T Consensus 415 r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence 999999887433322 1223456667777777
No 213
>PRK04296 thymidine kinase; Provisional
Probab=97.57 E-value=0.00012 Score=60.95 Aligned_cols=106 Identities=12% Similarity=-0.002 Sum_probs=55.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee-cccccccCCCchHHHHHHHHHHHhcCCCC--CCchHHHHHh---
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLE-NVREESQRPGGLACLRQKLLSNLLKDKNV--IPYIDLNFRR--- 125 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~--- 125 (362)
.+++++|+.|.||||++..++.++..+...++++. .+... .....+. ..+...... ......+...
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~----~~~~~i~----~~lg~~~~~~~~~~~~~~~~~~~~ 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDR----YGEGKVV----SRIGLSREAIPVSSDTDIFELIEE 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccc----ccCCcEe----cCCCCcccceEeCChHHHHHHHHh
Confidence 47889999999999999999998765533333332 11110 1111111 111111110 1122222222
Q ss_pred hCCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 126 LSRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 126 l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
..++.-+|++|++.- .+++..+...+. ..+..+++|.+..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 223456899999952 333444443332 3566789998874
No 214
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00067 Score=62.48 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
++++++++|++|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.56 E-value=0.00021 Score=57.01 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=62.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHH----HHhcC-----CCCCCc----
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLS----NLLKD-----KNVIPY---- 118 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~-----~~~~~~---- 118 (362)
..|-||+..|.||||+|...+-+...+--.+.++....... ..+-..+.+.+.. ..... .+....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 46889999999999999999888665544455544333321 1122222222200 00000 000000
Q ss_pred ---hHHHHHhhCC-ceEEEEEeCC-----CCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 119 ---IDLNFRRLSR-MKVLIVFDDV-----TCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 119 ---~~~~~~~l~~-~~~llvlDd~-----~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
.....+.+.. .-=++|||++ ...-..+.+...+........+|+|.|+.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1112333333 3459999999 23334555666666667788999999975
No 216
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0013 Score=59.74 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..++++++|+.|+||||++..++..+......+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4678999999999999999999987654433344444
No 217
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=0.00042 Score=56.32 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=25.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc---Cccccee
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG---DFECSCF 84 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~~~~ 84 (362)
.|+|.|++|+||||||+.+++.+.- +++..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 4889999999999999999998642 3555554
No 218
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.49 E-value=0.00021 Score=65.25 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=53.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
....++|.|++|+||||++..++..+.......++.. -.... ..... ...+..+.........-.+.+...++..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp~E---~~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDPIE---YVHRN-KRSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCChh---hhccC-ccceEEccccCCCCcCHHHHHHHhhccC
Confidence 3568999999999999999999887754433444332 00000 00000 0000000000111112233366778889
Q ss_pred eEEEEEeCCCCchhhhHhhc
Q 037416 130 KVLIVFDDVTCFNQLESLIG 149 (362)
Q Consensus 130 ~~llvlDd~~~~~~~~~l~~ 149 (362)
|=+|++|++.+.+.......
T Consensus 196 pd~i~vgEird~~~~~~~l~ 215 (343)
T TIGR01420 196 PDVILIGEMRDLETVELALT 215 (343)
T ss_pred CCEEEEeCCCCHHHHHHHHH
Confidence 99999999987776655443
No 219
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.48 E-value=0.00052 Score=57.41 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCC
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIP 117 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 117 (362)
+.+...+. ++.++++|.|++|+|||+++..+...+.... ..+.+. ..+-. -...+..... ....
T Consensus 8 ~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~--------apT~~-Aa~~L~~~~~---~~a~ 71 (196)
T PF13604_consen 8 EAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGL--------APTNK-AAKELREKTG---IEAQ 71 (196)
T ss_dssp HHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEE--------ESSHH-HHHHHHHHHT---S-EE
T ss_pred HHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEE--------CCcHH-HHHHHHHhhC---cchh
Confidence 33444443 4556889999999999999999888776653 333333 11111 1111211211 1122
Q ss_pred chHHHHHhh----------CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeC
Q 037416 118 YIDLNFRRL----------SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 118 ~~~~~~~~l----------~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr 165 (362)
++..+.... ....-++|+|+.. +...+..+...... .++++|+..=
T Consensus 72 Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 72 TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred hHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 233222211 1223599999995 55566667665552 4667777664
No 220
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.46 E-value=0.00035 Score=63.87 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
..++-+-|||+.|.|||.|+-.+++.+.......+ .+-.+...+-..+.........+..+.+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~-------------HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~ 126 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV-------------HFHEFMLDVHSRLHQLRGQDDPLPQVADELAK 126 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccc-------------cccHHHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 34778999999999999999999998643211111 11233333333332222333445566667777
Q ss_pred ceEEEEEeCCC--Cchh---hhHhhccCCCCCCCcEEEEEeC
Q 037416 129 MKVLIVFDDVT--CFNQ---LESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 129 ~~~llvlDd~~--~~~~---~~~l~~~~~~~~~~~~ilitsr 165 (362)
...+|+||++. +..+ +..++..+- ..|..++.||.
T Consensus 127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 77899999994 4443 344443332 34555555554
No 221
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.46 E-value=0.00091 Score=58.15 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH--hhcCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK--ISGDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~--~~~~~~~~~~~~ 86 (362)
+-+.+|+||+|+|||.|.+.+..- +..-...++|++
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFIt 124 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFIT 124 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEEC
Confidence 445678999999999999998763 344456667775
No 222
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0048 Score=52.49 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=40.3
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
|-.....+-|-++.+++|.+++.- +-..++-|.+|||+|.|||-+|+..+.+..
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 444455678899999999886631 112256789999999999999999988743
No 223
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0015 Score=60.35 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++++.|++|+||||++..++..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999865
No 224
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.44 E-value=0.00053 Score=59.76 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=39.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
+.+.++|.|++|+|||+|+..+++....+|...+++..+.+ ......++.+.+..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe---r~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE---RTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc---CcHHHHHHHHHHHh
Confidence 35568899999999999999999998766655555543333 24456666666643
No 225
>PRK07667 uridine kinase; Provisional
Probab=97.40 E-value=0.00039 Score=58.06 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=32.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
++.+.+.+....+...+|+|.|++|+||||++..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555666555566789999999999999999999998754
No 226
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.029 Score=55.04 Aligned_cols=73 Identities=23% Similarity=0.291 Sum_probs=44.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSR 128 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~ 128 (362)
+..-|.+|||+|+|||-+|+.++-.+.-.| .. +. .. .+++....+. ..++.. +.++-..
T Consensus 704 kRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS----VK--GP-------ELLNMYVGqS--E~NVR~VFerAR~A 763 (953)
T KOG0736|consen 704 KRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS----VK--GP-------ELLNMYVGQS--EENVREVFERARSA 763 (953)
T ss_pred ccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee----ec--CH-------HHHHHHhcch--HHHHHHHHHHhhcc
Confidence 355699999999999999999998765443 11 10 11 1222222222 233333 3334446
Q ss_pred ceEEEEEeCCCCch
Q 037416 129 MKVLIVFDDVTCFN 142 (362)
Q Consensus 129 ~~~llvlDd~~~~~ 142 (362)
.||+|.||++++..
T Consensus 764 ~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 764 APCVIFFDELDSLA 777 (953)
T ss_pred CCeEEEeccccccC
Confidence 89999999996553
No 227
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.38 E-value=0.0048 Score=61.48 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
-+.++|.+..+.++.+...........|.|+|++|+||+++|+.+.+..
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 3558999999998888776533445568999999999999999998764
No 228
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.37 E-value=0.0012 Score=62.52 Aligned_cols=94 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC--
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-- 114 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 114 (362)
+..|...|..+=....++.|+|++|+|||||+.+++.........++|+.. ..+...+.... ..+....+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-------Ees~~qi~~ra-~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-------EESASQIKLRA-ERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-------cccHHHHHHHH-HHcCCChhcE
Confidence 445555554332346789999999999999999999887544345566651 12222332221 22221111
Q ss_pred ---CCCchHHHHHhhC-CceEEEEEeCC
Q 037416 115 ---VIPYIDLNFRRLS-RMKVLIVFDDV 138 (362)
Q Consensus 115 ---~~~~~~~~~~~l~-~~~~llvlDd~ 138 (362)
....+..+...+. .++-++|+|.+
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSI 165 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSI 165 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEech
Confidence 1223444444443 35679999998
No 229
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0012 Score=60.44 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
...+++++||+|+||||++..++.++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999988643
No 230
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.35 E-value=0.0023 Score=59.99 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh--cCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS--GDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~ 86 (362)
.++++++|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46889999999999999999988765 3323344444
No 231
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.35 E-value=0.00055 Score=58.51 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=36.7
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
+...+...+.+..++..+|+|+|++|+|||||+..+...+... +..+-+...+..+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSS 69 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSS 69 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGG
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCC
Confidence 4445555555555668899999999999999999999988754 3344444444444
No 232
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.35 E-value=0.0012 Score=62.56 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+..|...|..+=....+++|.|++|+|||||+.+++.........++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44555555433345778999999999999999999888755434556665
No 233
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00037 Score=57.02 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
+.|.++|++|+||||+|+++++.+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999999876653
No 234
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.34 E-value=0.0013 Score=56.48 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=34.1
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~ 86 (362)
.|..+|..+=....++.|+|++|+|||+|+.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34455543334577899999999999999999988754333 4566665
No 235
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.33 E-value=0.00032 Score=61.52 Aligned_cols=102 Identities=13% Similarity=0.110 Sum_probs=57.4
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN- 114 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 114 (362)
.++.|..++. .....++|.|++|+||||++..+...+......++.+-...+.. +.. + .+......
T Consensus 68 ~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~-----~~~----~-~q~~v~~~~ 134 (264)
T cd01129 68 NLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ-----IPG----I-NQVQVNEKA 134 (264)
T ss_pred HHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec-----CCC----c-eEEEeCCcC
Confidence 3344555553 34568999999999999999999887643222223332111110 000 0 01111111
Q ss_pred CCCchHHHHHhhCCceEEEEEeCCCCchhhhHhhcc
Q 037416 115 VIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLIGS 150 (362)
Q Consensus 115 ~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~ 150 (362)
.....+.+...++..+-.++++++.+.+....+...
T Consensus 135 ~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 135 GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 122233467778888999999999877765544433
No 236
>PRK10867 signal recognition particle protein; Provisional
Probab=97.32 E-value=0.0034 Score=58.72 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.++.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36789999999999999999998877655
No 237
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.31 E-value=0.0066 Score=58.78 Aligned_cols=49 Identities=22% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.-+.++|....++++.+.+.........|.|+|++|+||+.+|+.+...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 3346999999888887766543334556889999999999999996554
No 238
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0039 Score=54.11 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=89.6
Q ss_pred CCCCCCCcccccchHHHHHHHhc----------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLG----------VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
|...=..+.|-+...+.|.++.. .....-+.|+++||+|.|||.||+.++-...+.| |..
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF----FSv------ 197 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF----FSV------ 197 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce----EEe------
Confidence 33344456777777777766432 1122257799999999999999999998654322 221
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHHh-hCCceEEEEEeCCCCch---------hh----hHhhccC---CCCC
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRR-LSRMKVLIVFDDVTCFN---------QL----ESLIGSL---DRLT 155 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~llvlDd~~~~~---------~~----~~l~~~~---~~~~ 155 (362)
+..++...++... ...+..+.+. -..+|.+|.+|+++... .. .+|+-.+ ....
T Consensus 198 ----SSSDLvSKWmGES------EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 198 ----SSSDLVSKWMGES------EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ----ehHHHHHHHhccH------HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 1123333332110 1112222332 24688999999994221 11 1222111 1112
Q ss_pred CCcEEEEEeCChHHHhh-c--CCCceEEcCCCCHHHHH-HHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 156 PVSRIIITTRNKQVLRN-W--GVSKIYEMQALEYHHAL-ELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 156 ~~~~ilitsr~~~~~~~-~--~~~~~~~l~~l~~~e~~-~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
.+.-++-.|.-+=.+.. + .....|-+ ||....+. .+|.-.+ + ..+....++..+.+...++|..-+
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhl-G-~tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHL-G-DTPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheecc-C-CCccccchhhHHHHHhhcCCCCcC
Confidence 23222223322211111 1 12223333 44444444 4444343 2 244455677889999999987643
No 239
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.27 E-value=0.00076 Score=56.29 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=35.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLL 110 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (362)
+++++++||+|+||||.+..++.++......+..++ .+. ......+-++.+...+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D~---~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-ADT---YRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-EST---SSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-CCC---CCccHHHHHHHHHHHhc
Confidence 468999999999999999999888765533344443 221 12234444445555544
No 240
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.26 E-value=0.0014 Score=53.06 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=62.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHH---hcCC-----CCCC----
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNL---LKDK-----NVIP---- 117 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~-----~~~~---- 117 (362)
....|-|++..|.||||.|...+.+...+--.+..+....... ...-....+.+.-.+ .... +...
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~--~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW--PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc--ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 3467889999999999999999988765533443333333221 112112222210000 0000 0000
Q ss_pred ---chHHHHHhhCCce-EEEEEeCC-----CCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 118 ---YIDLNFRRLSRMK-VLIVFDDV-----TCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 118 ---~~~~~~~~l~~~~-~llvlDd~-----~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
......+.+...+ -++|||++ +..-+.+.+...+...+....+|+|.|..
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 0111333333333 59999999 23333455555555567778999999975
No 241
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.25 E-value=0.00018 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=21.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
|.|+|++|+|||+|+..++..+.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999887543
No 242
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.25 E-value=0.00093 Score=58.81 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..++++++|++|+||||++..++..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46789999999999999999999887654
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00036 Score=54.85 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC-cccc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD-FECS 82 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~ 82 (362)
--++|+|++|+||||+++.+++.+++. |...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 458999999999999999999988655 4433
No 244
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.24 E-value=0.0015 Score=56.82 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=62.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
.....|.|+||.|+||||......+.+..++...+.-. .+. .+-.-.-.+++..+-....+..+-...++..++.
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI----EDP-IE~vh~skkslI~QREvG~dT~sF~~aLraALRe 197 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI----EDP-IEYVHESKKSLINQREVGRDTLSFANALRAALRE 197 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe----cCc-hHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhc
Confidence 45778999999999999988888888777665554332 111 1112222334444433344444445568888999
Q ss_pred ceEEEEEeCCCCchhhhHhh
Q 037416 129 MKVLIVFDDVTCFNQLESLI 148 (362)
Q Consensus 129 ~~~llvlDd~~~~~~~~~l~ 148 (362)
.|=+|++-++.|.+....-+
T Consensus 198 DPDVIlvGEmRD~ETi~~AL 217 (353)
T COG2805 198 DPDVILVGEMRDLETIRLAL 217 (353)
T ss_pred CCCEEEEeccccHHHHHHHH
Confidence 99999999998777765544
No 245
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0026 Score=56.78 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=79.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHH--HHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLR--QKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
++-|.++||+|+|||-||+.++.+....|-.+-... ..+ ..+. +.+...+.. -..+=
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~--------lt~-KWfgE~eKlv~AvFs------------lAsKl 185 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN--------LTS-KWFGEAQKLVKAVFS------------LASKL 185 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcceeeccc--------cch-hhHHHHHHHHHHHHh------------hhhhc
Confidence 567999999999999999999998766554322211 000 1110 111111110 01123
Q ss_pred ceEEEEEeCCCCch---------h-------hhHhhccCCCCCCCcEEEE---EeCCh----HHHhhcCCCceEEcCCCC
Q 037416 129 MKVLIVFDDVTCFN---------Q-------LESLIGSLDRLTPVSRIII---TTRNK----QVLRNWGVSKIYEMQALE 185 (362)
Q Consensus 129 ~~~llvlDd~~~~~---------~-------~~~l~~~~~~~~~~~~ili---tsr~~----~~~~~~~~~~~~~l~~l~ 185 (362)
.|++|.+|.+++.- . ...+..-+. ...+++|+| |.|.. .+...+.....+.++ .
T Consensus 186 ~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP--~ 262 (386)
T KOG0737|consen 186 QPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-SKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLP--D 262 (386)
T ss_pred CcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc-CCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCC--c
Confidence 68899999884221 1 111111222 124446666 44544 333444333334443 3
Q ss_pred HHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH-HHHHhhh
Q 037416 186 YHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA-LNVLGCF 231 (362)
Q Consensus 186 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~-i~~~~~~ 231 (362)
..+..+++.-.+......+ .=...+|++.|.|+.-. |.+++..
T Consensus 263 ~~qR~kILkviLk~e~~e~---~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 263 AEQRRKILKVILKKEKLED---DVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred hhhHHHHHHHHhcccccCc---ccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 5555566655543333222 12378899999997755 5555553
No 246
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.23 E-value=0.0013 Score=56.78 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=33.3
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~ 86 (362)
.|...|..+=....++.|+|++|+|||+|+.+++...... ...++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444454333457789999999999999999998663222 24566765
No 247
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.22 E-value=0.00038 Score=66.27 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=42.2
Q ss_pred CcccccchHHHHHHHh----ccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 29 QLVGVESTVDEIESLL----GVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l----~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.++|-++.++++.+.| ...+...+++.+.||+|+|||+|++.++..+...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 4799999999999988 3334567899999999999999999999976554
No 248
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.22 E-value=0.00028 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.822 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+|.|++|+||||+++.+..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 249
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.19 E-value=0.0029 Score=52.14 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=60.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHH------HHHHHHHhcCC------CCCC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLR------QKLLSNLLKDK------NVIP 117 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~------~~~~ 117 (362)
....++|.|+.|+|||||++.++...... ...+++.... .. ........ .+++..+.... ...+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~~-~~--~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKD-LA--SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCEE-CC--cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 45689999999999999999998865433 3334443111 11 10111111 11222221111 0111
Q ss_pred chH----HHHHhhCCceEEEEEeCCC---CchhhhHhhccCCCCC-C-CcEEEEEeCChHHHh
Q 037416 118 YID----LNFRRLSRMKVLIVFDDVT---CFNQLESLIGSLDRLT-P-VSRIIITTRNKQVLR 171 (362)
Q Consensus 118 ~~~----~~~~~l~~~~~llvlDd~~---~~~~~~~l~~~~~~~~-~-~~~ilitsr~~~~~~ 171 (362)
.-. .+...+...|-++++|+.. +....+.+...+.... . +..+|++|.+.....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 111 1556666788999999983 3333344433332221 2 457888887765443
No 250
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.18 E-value=0.00087 Score=57.15 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=35.8
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..|..++..+=....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433345788999999999999999999988755445566664
No 251
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.17 E-value=0.0006 Score=57.71 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...+++.|+|++|+|||+|+.+++.........++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45789999999999999999999988755556677776
No 252
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.17 E-value=0.00075 Score=61.72 Aligned_cols=96 Identities=10% Similarity=0.023 Sum_probs=52.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcc--cceeeecccccccCCCchHHHHH--HHHHHHhcCCCCCCchHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFE--CSCFLENVREESQRPGGLACLRQ--KLLSNLLKDKNVIPYIDLNFRR 125 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~ 125 (362)
....|+|.|++|+||||++..++..+....+ ..++.. -+.. ...+..+.. ....+.........-...+...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~-Edpi---E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY-EAPI---EFVYDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe-CCCc---eEeccccccccceeeeeeccccccCHHHHHHHH
Confidence 4578999999999999999999988754322 122221 1100 000111000 0000100000111222336777
Q ss_pred hCCceEEEEEeCCCCchhhhHhhc
Q 037416 126 LSRMKVLIVFDDVTCFNQLESLIG 149 (362)
Q Consensus 126 l~~~~~llvlDd~~~~~~~~~l~~ 149 (362)
++..|-.+++.++.+.+.....+.
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHH
Confidence 888899999999987777654443
No 253
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.16 E-value=0.0027 Score=50.20 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=55.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC-chHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG-GLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
...+++|.|+.|.|||||++.++...... ...+++.......-.+. +.-. ..--.+...+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~~~lS~G~----------------~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYFEQLSGGE----------------KMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEEccCCHHH----------------HHHHHHHHHHhc
Confidence 45678999999999999999998865432 23333321100000000 0000 000113445556
Q ss_pred ceEEEEEeCCC---CchhhhHhhccCCCCCCCcEEEEEeCChHHHhh
Q 037416 129 MKVLIVFDDVT---CFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN 172 (362)
Q Consensus 129 ~~~llvlDd~~---~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~ 172 (362)
++-++++|+.. +......+...+... +..++++|.+......
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 77899999983 333344443333322 2467777776544433
No 254
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0051 Score=59.23 Aligned_cols=177 Identities=19% Similarity=0.180 Sum_probs=95.6
Q ss_pred CCCCcccccchHHHHHHHh---ccCC-------CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCC
Q 037416 26 NKNQLVGVESTVDEIESLL---GVES-------KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRP 95 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l---~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (362)
.-....|.+...+++.+.+ ..+. .-++-|.++||+|+|||.||+.++-...-.| |.. | .
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF----f~i-----S--G 216 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSI-----S--G 216 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc----eec-----c--c
Confidence 3345788887777766544 3221 2267799999999999999999998743222 111 0 0
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc----------------hhhhHhhccCCCCCC-Cc
Q 037416 96 GGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF----------------NQLESLIGSLDRLTP-VS 158 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~~~~-~~ 158 (362)
.++.+- .........-+.+.+..++-|+++++|.++.. +.+.+++....-... ..
T Consensus 217 ---S~FVem-----fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~g 288 (596)
T COG0465 217 ---SDFVEM-----FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEG 288 (596)
T ss_pred ---hhhhhh-----hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCc
Confidence 011100 11111112223344455566899999988422 123444433332221 12
Q ss_pred EEEE--EeCCh----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 159 RIII--TTRNK----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 159 ~ili--tsr~~----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
-|++ |.|.+ .+.........+.++.-+.....+.+.-++......+.. ....|+..+-|+-.|
T Consensus 289 viviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V---dl~~iAr~tpGfsGA 357 (596)
T COG0465 289 VIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV---DLKKIARGTPGFSGA 357 (596)
T ss_pred eEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC---CHHHHhhhCCCcccc
Confidence 2332 44543 222222345567777777777777777555443333211 134488888888776
No 255
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.12 E-value=0.00099 Score=57.09 Aligned_cols=48 Identities=21% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.|...|..+=....++.|+|++|+|||+++.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 355555433345778999999999999999999988755556677776
No 256
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.12 E-value=0.002 Score=57.19 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..++++|.|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988754
No 257
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.056 Score=48.20 Aligned_cols=159 Identities=9% Similarity=0.068 Sum_probs=88.3
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc----------CcccceeeecccccccCCCchHHHHHHHH
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG----------DFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
++.|...+.. +.-.++..++|+.|+||++++..+++.+-. +.+...++. .... .-...++. .+.
T Consensus 5 ~~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d---~~g~-~i~vd~Ir-~l~ 78 (299)
T PRK07132 5 IKFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD---IFDK-DLSKSEFL-SAI 78 (299)
T ss_pred HHHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec---cCCC-cCCHHHHH-HHH
Confidence 3445555542 234778889999999999999999998611 111111111 0000 11111111 121
Q ss_pred HHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCC-hHHHhh-cCCCceEEcC
Q 037416 107 SNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRN-KQVLRN-WGVSKIYEMQ 182 (362)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~ 182 (362)
..+.... .-.+.+-++|+|+++.. .....++..+..-+..+.+|+++.. ..+.+. .+....+++.
T Consensus 79 ~~~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~ 147 (299)
T PRK07132 79 NKLYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVK 147 (299)
T ss_pred HHhccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECC
Confidence 1111100 01135668888998644 3455566666555666777765543 344433 3557789999
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCC
Q 037416 183 ALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQG 220 (362)
Q Consensus 183 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G 220 (362)
+++.++..+.+... +.+ ++.+..++..++|
T Consensus 148 ~l~~~~l~~~l~~~----~~~----~~~a~~~a~~~~~ 177 (299)
T PRK07132 148 EPDQQKILAKLLSK----NKE----KEYNWFYAYIFSN 177 (299)
T ss_pred CCCHHHHHHHHHHc----CCC----hhHHHHHHHHcCC
Confidence 99999999887653 111 2345556666665
No 258
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.10 E-value=0.0011 Score=57.48 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=39.3
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
-.+|...+....++..+|+|+|++|+|||||.-.+...+...-. .+-+...+..|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~-rVaVlAVDPSS 91 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH-RVAVLAVDPSS 91 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc-EEEEEEECCCC
Confidence 34566666656677889999999999999999999999866533 33333344333
No 259
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.00067 Score=55.72 Aligned_cols=36 Identities=31% Similarity=0.598 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
.+.+|++.|++|+||||+++.++..+...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 456899999999999999999999987665555555
No 260
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.08 E-value=0.00076 Score=52.14 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=29.1
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+..++.+.+.+.-....+++|.|+-|+|||||++.++..+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 33444444432213455899999999999999999999863
No 261
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.07 E-value=0.00052 Score=57.37 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+|+|.|++|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 58999999999999999999998643
No 262
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.06 E-value=0.00065 Score=56.21 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=31.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.++++|.||+|+|||||+..++......|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 467899999999999999999999888887666654
No 263
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.06 E-value=0.007 Score=55.23 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=25.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh--cCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS--GDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~ 86 (362)
.+++.++||+|+||||-...++.++. ..-..+..++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 78999999999999986666666543 3334455554
No 264
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.06 E-value=0.00081 Score=54.62 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=34.9
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 30 LVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+||.+..++++.+.+.........|+|+|++|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888888776544455678899999999999999998854
No 265
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.013 Score=52.79 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred CCCCcccccchHHHHHHHhc----------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 26 NKNQLVGVESTVDEIESLLG----------VESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.=+.+.|-++..+-|.++.. ....-=+-|+++||+|+|||-||+.++-.....
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 33456777776666666442 111223568999999999999999999986543
No 266
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0012 Score=55.89 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=34.7
Q ss_pred cccccchHHHHHHHhc----------c-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 30 LVGVESTVDEIESLLG----------V-ESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~----------~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
+-|-+-..+++.+..+ + +-+.++-|.+|||+|+|||-|++.++++....|
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 4455555555555443 1 224477899999999999999999999754443
No 267
>PRK07261 topology modulation protein; Provisional
Probab=97.04 E-value=0.0005 Score=56.14 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|+|+|++|+||||||+.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 268
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.04 E-value=0.00054 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+|++.|++|+||||+++.+...+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999998754
No 269
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.04 E-value=0.001 Score=52.93 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
..+|.|+|.+|+||||||+.+..++......+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 45789999999999999999999987764444444
No 270
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.03 E-value=0.00048 Score=52.39 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcCccc
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGDFEC 81 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~~~~ 81 (362)
|.|+|.+|+|||++++.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999988777654
No 271
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=97.03 E-value=0.0013 Score=67.26 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=97.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCc----ccceeeecccccccCCCchH-HHHHHHHHHHhcCCCCCCchHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDF----ECSCFLENVREESQRPGGLA-CLRQKLLSNLLKDKNVIPYIDLNFRR 125 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~ 125 (362)
..-+.|.|.+|.||||+...++-.+..+. +..+++.............. .+..-+...+............+.+.
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~ 301 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQEL 301 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHH
Confidence 34688999999999999999988653322 23333331111100011111 33333333333333334444445678
Q ss_pred hCCceEEEEEeCCCCchh------hhHhhccCCCCCCCcEEEEEeCChHHHhhcCCCceEEcCCCCHHHHHHHHHHhh--
Q 037416 126 LSRMKVLIVFDDVTCFNQ------LESLIGSLDRLTPVSRIIITTRNKQVLRNWGVSKIYEMQALEYHHALELFCRHA-- 197 (362)
Q Consensus 126 l~~~~~llvlDd~~~~~~------~~~l~~~~~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~-- 197 (362)
+...++++++|.++.... ... ...+..--+..++|+|+|.............+.+..+.......++....
T Consensus 302 l~~g~~llLlDGlDe~~~~~~~~~~~~-i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~ 380 (824)
T COG5635 302 LKTGKLLLLLDGLDELEPKNQRALIRE-INKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLD 380 (824)
T ss_pred HhccchhhHhhccchhhhhhHHHHHHH-HHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHH
Confidence 888999999999964432 111 11122223567899999977555554445667777777766665554211
Q ss_pred ---hcC-CCCCCC-------hHHHHHHHHHHcCCCchHHHHHhhhhc
Q 037416 198 ---FKQ-NHPDVG-------YEELSSKAMNYAQGVPLALNVLGCFLY 233 (362)
Q Consensus 198 ---~~~-~~~~~~-------~~~~~~~i~~~~~G~Pl~i~~~~~~l~ 233 (362)
... ...... .......-......+|+.|.+.+....
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 381 AFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 111 011100 001112223334889999988885544
No 272
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.03 E-value=0.00066 Score=59.95 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=60.9
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHH
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSN 108 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (362)
.+.-.....+.+.++|...-.....++|.|++|+||||++..++..+......++.+-...+......... .
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~--------~ 176 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQI--------Q 176 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEE--------E
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceE--------E
Confidence 34444444555666665322346789999999999999999999877655122222221111100000000 0
Q ss_pred HhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchhhhHhh
Q 037416 109 LLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLI 148 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~ 148 (362)
.....+.....+.+...++..|=.++++++.+.+....+.
T Consensus 177 ~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~ 216 (270)
T PF00437_consen 177 IQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQ 216 (270)
T ss_dssp EEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHH
T ss_pred EEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHH
Confidence 0000122333444777788888999999998777766643
No 273
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.02 E-value=0.0035 Score=51.56 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....++|.|+.|+|||||++.++-...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345789999999999999999988643
No 274
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.02 E-value=0.00015 Score=63.47 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+.|+|+|.+|+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 478999999999999999999988764
No 275
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.00 E-value=0.0013 Score=57.76 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=36.7
Q ss_pred HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 40 IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 40 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
|.+.+..+=+..++++|+|++|+|||+++.+++.........++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33444333356789999999999999999999998777767777776
No 276
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.00 E-value=0.00077 Score=57.05 Aligned_cols=27 Identities=41% Similarity=0.618 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+..+|+|.|++|+|||||++.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999999987
No 277
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.00 E-value=0.0023 Score=57.41 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+...+.|+|-++.+.+|.+.+.. .+...+++.+.||.|.|||||+..+.+-+...
T Consensus 56 y~~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 56 YPFFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cCCccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 344566899999999999998875 23458899999999999999999999887766
No 278
>PRK08233 hypothetical protein; Provisional
Probab=96.99 E-value=0.00069 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+|+|.|++|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999864
No 279
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.99 E-value=0.024 Score=54.41 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=39.4
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++|+...+..+.+.+.........|.|+|++|+|||++|+.+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 459999999988888776544556678999999999999999887764
No 280
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.99 E-value=0.00099 Score=59.86 Aligned_cols=59 Identities=31% Similarity=0.324 Sum_probs=41.0
Q ss_pred CCCCCCCcccccchHHH---HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCccc
Q 037416 23 PRDNKNQLVGVESTVDE---IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFEC 81 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~---l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~ 81 (362)
+-...+.+||..+..+. +.+++.++.=..+.+++.||+|+|||+||..+++.+....++
T Consensus 19 ~~~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 19 ARYIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp B-SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred EeeccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 44456789998887766 455665444457899999999999999999999998866443
No 281
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.0013 Score=53.32 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=58.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCch----HHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYI----DLNFRR 125 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~ 125 (362)
....++|.|+.|+|||||++.++-..... ...+++... ... ........+ .....-.+ .+.- -.+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~-~~~--~~~~~~~~~---~~i~~~~q-LS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGK-EVS--FASPRDARR---AGIAMVYQ-LSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE-ECC--cCCHHHHHh---cCeEEEEe-cCHHHHHHHHHHHH
Confidence 35578999999999999999998765432 333444311 110 001111000 00000000 1111 115556
Q ss_pred hCCceEEEEEeCCC---CchhhhHhhccCCCC-CCCcEEEEEeCChHHHhh
Q 037416 126 LSRMKVLIVFDDVT---CFNQLESLIGSLDRL-TPVSRIIITTRNKQVLRN 172 (362)
Q Consensus 126 l~~~~~llvlDd~~---~~~~~~~l~~~~~~~-~~~~~ilitsr~~~~~~~ 172 (362)
+-..|-++++|+.. |......+...+... ..+..+|++|.+......
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 66778899999983 333333333333222 235568888877654433
No 282
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.99 E-value=0.0027 Score=56.66 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=68.6
Q ss_pred ccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH--h-hcCcccceeeeccccccc----CCCchHHHHH
Q 037416 31 VGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK--I-SGDFECSCFLENVREESQ----RPGGLACLRQ 103 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 103 (362)
-+|..+..--..+|. ++....|.+.|.+|+|||-||..+.-. + +..|...+.....-...+ .+..-.+-..
T Consensus 227 ~prn~eQ~~ALdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 227 RPRNAEQRVALDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred CcccHHHHHHHHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 345555555555555 567889999999999999988776543 2 233444443322221111 1122222222
Q ss_pred HHHHHHhcCCC--------CCCchHHH----------HHhhCCc---eEEEEEeCCCCchhhhHhhccCCCCCCCcEEEE
Q 037416 104 KLLSNLLKDKN--------VIPYIDLN----------FRRLSRM---KVLIVFDDVTCFNQLESLIGSLDRLTPVSRIII 162 (362)
Q Consensus 104 ~l~~~~~~~~~--------~~~~~~~~----------~~~l~~~---~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ili 162 (362)
-|+.....+.. ....++.+ ....+++ .-++|+|++.+... ..+...+.+.+.+++|+.
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl 383 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVL 383 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEE
Confidence 22222211111 11112211 1122333 35999999976553 333344555688999888
Q ss_pred EeCC
Q 037416 163 TTRN 166 (362)
Q Consensus 163 tsr~ 166 (362)
|.-.
T Consensus 384 ~gd~ 387 (436)
T COG1875 384 TGDP 387 (436)
T ss_pred cCCH
Confidence 7753
No 283
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.0007 Score=46.08 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
++.|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999987
No 284
>PRK06762 hypothetical protein; Provisional
Probab=96.98 E-value=0.00074 Score=54.85 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.+|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 285
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.98 E-value=0.048 Score=48.18 Aligned_cols=127 Identities=9% Similarity=0.006 Sum_probs=68.7
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-------------cccceeeecccccccCCCchHHHHH
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-------------FECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
-++|...+.. +.-.+...++|+.|+||+++|..++..+-.. .+...++..... . ...
T Consensus 6 ~~~L~~~i~~-~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~--~~I------ 75 (290)
T PRK05917 6 WEALIQRVRD-QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-G--RLH------ 75 (290)
T ss_pred HHHHHHHHHc-CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-C--CcC------
Confidence 3455555542 2337788899999999999999999875321 011111110000 0 000
Q ss_pred HHHHHHhcCCCCCCchHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCC-hHHHhh-cC
Q 037416 104 KLLSNLLKDKNVIPYIDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRN-KQVLRN-WG 174 (362)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~-~~~~~~-~~ 174 (362)
....+..+...+ .+..-++|+|+++ +.+....++-.+..-+.++.+|++|.+ ..+.+. .+
T Consensus 76 -----------~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 76 -----------SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred -----------cHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh
Confidence 011111122222 2344588999996 445566666666555566666666655 344433 34
Q ss_pred CCceEEcCCC
Q 037416 175 VSKIYEMQAL 184 (362)
Q Consensus 175 ~~~~~~l~~l 184 (362)
....+.+.++
T Consensus 145 Rcq~~~~~~~ 154 (290)
T PRK05917 145 RSLSIHIPME 154 (290)
T ss_pred cceEEEccch
Confidence 4567777765
No 286
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.98 E-value=0.0011 Score=64.85 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=48.5
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc-Ccccceeeec
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLEN 87 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~ 87 (362)
||..-+.++|.+..++.|...+..+ +.+.++|++|+|||++++.+++.+.. .++..+|+.+
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 5556677999999999998877632 46899999999999999999998643 3466777765
No 287
>PTZ00301 uridine kinase; Provisional
Probab=96.97 E-value=0.00079 Score=56.76 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+.+|+|.|++|+||||||+.+.+++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999887643
No 288
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.97 E-value=0.0016 Score=56.36 Aligned_cols=49 Identities=12% Similarity=0.083 Sum_probs=35.7
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..|.+.+..+=.....+.|.|++|+|||+|+.+++...-.....++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455555544455788999999999999999999876434445666665
No 289
>PTZ00494 tuzin-like protein; Provisional
Probab=96.97 E-value=0.0027 Score=58.39 Aligned_cols=62 Identities=15% Similarity=0.065 Sum_probs=49.9
Q ss_pred CCCCCCCCcccccchHHHHHHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..+..+..+|.|+.|-.-+.+.|.+ ....+++++++|..|+|||+|.+.+..+-. -..+++.
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD 427 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD 427 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE
Confidence 4566778899999999999998887 345699999999999999999999988622 3345554
No 290
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.97 E-value=0.00068 Score=59.68 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..+.+.++|++|+|||++++.+...+..
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCc
Confidence 4556799999999999999999887543
No 291
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.96 E-value=0.00097 Score=61.33 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCcccccchHHHHHHHhccC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVE------------SKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++++|.++..+.+.-++..+ .-.++.|+++||+|+|||++|+.++..+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 56899999888887665521 1124679999999999999999999987543
No 292
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.95 E-value=0.0015 Score=53.70 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=63.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH--HH--HhcC-----CCCCCc--
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL--SN--LLKD-----KNVIPY-- 118 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~--~~~~-----~~~~~~-- 118 (362)
....|.|+|..|-||||.|...+-+...+--.+..+....... ..+-...++.+. .. .... .+....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3567999999999999999999888655544444444333321 112222222210 00 0000 000000
Q ss_pred -----hHHHHHhhCCc-eEEEEEeCC-----CCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 119 -----IDLNFRRLSRM-KVLIVFDDV-----TCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 119 -----~~~~~~~l~~~-~~llvlDd~-----~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
.....+.+... --++|||++ +..-+.+.+...+...+....+|+|.|..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11133344333 359999999 23334555555555567778999999965
No 293
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.95 E-value=0.01 Score=55.27 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.+|.++|++|+||||++..++..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36789999999999999999999877654
No 294
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.95 E-value=0.0013 Score=56.51 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=26.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+...+++|.|++|+|||||++.++..+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999999987654
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=96.94 E-value=0.00088 Score=46.45 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=20.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.++++|.|++|+|||+++......+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45577889999999997766666654
No 296
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.0017 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|.|.|++|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999984
No 297
>PRK06547 hypothetical protein; Provisional
Probab=96.94 E-value=0.0015 Score=53.21 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.....+|+|.|++|+||||++..+++.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999999874
No 298
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.93 E-value=0.022 Score=49.72 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=30.7
Q ss_pred cchHHHHHHHhccCCC-CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 34 ESTVDEIESLLGVESK-GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 34 ~~el~~l~~~l~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+-.+..+...+....+ ++=++.++|.+|+||..+++.+++.+..
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~ 136 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYR 136 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHh
Confidence 3344445555544333 3556779999999999999999997543
No 299
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.93 E-value=0.002 Score=60.15 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=65.7
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN- 114 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 114 (362)
..+.+.+++. ....+++++||+|+||||..-.+...+......++-+-..-+.. ..+ ..++..+..
T Consensus 246 ~~~~~~~~~~---~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~--~~g--------I~Q~qVN~k~ 312 (500)
T COG2804 246 QLARLLRLLN---RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ--LPG--------INQVQVNPKI 312 (500)
T ss_pred HHHHHHHHHh---CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee--cCC--------cceeeccccc
Confidence 3445555553 56789999999999999999999998765544433332110000 000 011122222
Q ss_pred CCCchHHHHHhhCCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEe
Q 037416 115 VIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 115 ~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilits 164 (362)
...-...++..++..|=+|++.++.|.+.-+-..... --++++++|
T Consensus 313 gltfa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlST 358 (500)
T COG2804 313 GLTFARALRAILRQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLST 358 (500)
T ss_pred CCCHHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeee
Confidence 2222334777788889999999998777655444331 124566655
No 300
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.93 E-value=0.0016 Score=57.84 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=44.9
Q ss_pred CCCCCCCCcccccchHHH---HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 22 QPRDNKNQLVGVESTVDE---IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~---l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+-+..+.|||..+..+. +.++..++.-..+.|++.||+|+|||+||..+++.+...
T Consensus 33 ~~k~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~d 92 (450)
T COG1224 33 KAKFIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGED 92 (450)
T ss_pred CEeEcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 455567789998776655 455666555567889999999999999999999998755
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.004 Score=50.83 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....++|.|+.|.|||||++.++....
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 456789999999999999999988654
No 302
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.91 E-value=0.0012 Score=53.42 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
...+++|.||+|+|||||++.+..+. ++..++-.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~ 36 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSA 36 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEe
Confidence 35678999999999999999999986 44444443
No 303
>PRK04040 adenylate kinase; Provisional
Probab=96.91 E-value=0.001 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999999875
No 304
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.91 E-value=0.0028 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
...+++|.|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 356789999999999999998753
No 305
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.0044 Score=51.83 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
-..|.||+|+|||||.+.+++-+...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhcc
Confidence 36799999999999999999876543
No 306
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.88 E-value=0.0045 Score=50.26 Aligned_cols=115 Identities=22% Similarity=0.129 Sum_probs=57.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeec---ccccccCCC-chHHHHHHHHHHHhcCCCCCCchH----H
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLEN---VREESQRPG-GLACLRQKLLSNLLKDKNVIPYID----L 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~----~ 121 (362)
....++|.|+.|.|||||++.++..+.... ..+++.. .....+... ....+.+.+... .....+.-. .
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 355789999999999999999988654321 1222211 000111010 111222222110 111111111 1
Q ss_pred HHHhhCCceEEEEEeCCC---CchhhhHhhccCCCCCCCcEEEEEeCChHHH
Q 037416 122 NFRRLSRMKVLIVFDDVT---CFNQLESLIGSLDRLTPVSRIIITTRNKQVL 170 (362)
Q Consensus 122 ~~~~l~~~~~llvlDd~~---~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~ 170 (362)
+...+-.++-++++|+-. |......+...+... +..+|++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 556666788899999983 333333333333222 24577777766443
No 307
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.037 Score=50.35 Aligned_cols=58 Identities=17% Similarity=0.020 Sum_probs=40.5
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhhcCCCC-CCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 175 VSKIYEMQALEYHHALELFCRHAFKQNHP-DVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 175 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
...++++++++.+|+..++.-.+...-.. ....++..++++-.++|||..+.-++..+
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 45678999999999998887544221111 11124668889999999998887777665
No 308
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.88 E-value=0.0052 Score=49.95 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037416 54 LGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~ 74 (362)
++|.|++|+|||++|.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999876
No 309
>PRK06851 hypothetical protein; Provisional
Probab=96.88 E-value=0.0035 Score=57.16 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh-hcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI-SGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~~~~~~ 86 (362)
+-.+.++|.|++|+|||||++.++..+ ...+...++.+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 446789999999999999999999987 44556666665
No 310
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.87 E-value=0.0072 Score=53.88 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
.-.+-+-+||+=|.|||.|+-.+++.+...-.. ...+-.+...+-..+..-......+..+...+.+
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~-------------R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~ 129 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGERKR-------------RLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA 129 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCccccc-------------cccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh
Confidence 346778999999999999999999986433211 1112233333322222211222444445555666
Q ss_pred ceEEEEEeCCC--Cchh---hhHhhccCCCCCCCcEEEEEeC
Q 037416 129 MKVLIVFDDVT--CFNQ---LESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 129 ~~~llvlDd~~--~~~~---~~~l~~~~~~~~~~~~ilitsr 165 (362)
.-.+|+||++. |..+ +..++..+- ..|+.+++||.
T Consensus 130 ~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN 169 (367)
T COG1485 130 ETRVLCFDEFEVTDIADAMILGRLLEALF--ARGVVLVATSN 169 (367)
T ss_pred cCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCC
Confidence 67799999994 4433 333333322 34666666664
No 311
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.86 E-value=0.00093 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhc
Q 037416 54 LGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
++|+|++|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 312
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.85 E-value=0.0013 Score=55.66 Aligned_cols=28 Identities=39% Similarity=0.583 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+...+|+|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998764
No 313
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.85 E-value=0.0036 Score=57.43 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=52.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeee-cccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLE-NVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLS 127 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 127 (362)
....++|.|++|+||||++..+++.+.... +..++.. ...+.. ......+.. ..+.....+...-...+...++
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~--~~~~~~~~~--~~q~evg~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYI--LGSPDDLLP--PAQSQIGRDVDSFANGIRLALR 223 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhc--cCCCceeec--ccccccCCCccCHHHHHHHhhc
Confidence 345789999999999999999988775432 2222221 110000 000000000 0010001111122234677888
Q ss_pred CceEEEEEeCCCCchhhhHhhc
Q 037416 128 RMKVLIVFDDVTCFNQLESLIG 149 (362)
Q Consensus 128 ~~~~llvlDd~~~~~~~~~l~~ 149 (362)
..|=.|+++++.+.+..+..+.
T Consensus 224 ~~PD~I~vGEiRd~et~~~al~ 245 (372)
T TIGR02525 224 RAPKIIGVGEIRDLETFQAAVL 245 (372)
T ss_pred cCCCEEeeCCCCCHHHHHHHHH
Confidence 8999999999988877765443
No 314
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.85 E-value=0.0034 Score=51.36 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....++|.|+.|+|||||++.++....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 355789999999999999999987643
No 315
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0067 Score=61.06 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=69.0
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCC
Q 037416 34 ESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDK 113 (362)
Q Consensus 34 ~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (362)
.....+|.+++. ..++++|.|++|+||||-.-+++.+..-.....+-++..+ --...++.+.+...+....
T Consensus 52 ~~~~~~i~~ai~----~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPR-----RlAArsvA~RvAeel~~~~ 122 (845)
T COG1643 52 TAVRDEILKAIE----QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPR-----RLAARSVAERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHH----hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCch-----HHHHHHHHHHHHHHhCCCc
Confidence 355666777764 6778999999999999998888886433223334343111 1224555556655554432
Q ss_pred CC--------CC-----------chHHHHHhhCC-----ceEEEEEeCCCCchh-----hhHhhccCCCCCCCcEEEEEe
Q 037416 114 NV--------IP-----------YIDLNFRRLSR-----MKVLIVFDDVTCFNQ-----LESLIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 114 ~~--------~~-----------~~~~~~~~l~~-----~~~llvlDd~~~~~~-----~~~l~~~~~~~~~~~~ilits 164 (362)
.. .+ +...+.+.+.. +=-.+|+|++++... +..+...+....+..|+||+|
T Consensus 123 G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 123 GETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred CceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 10 00 01124444433 234899999964432 222222233334458999988
Q ss_pred C
Q 037416 165 R 165 (362)
Q Consensus 165 r 165 (362)
=
T Consensus 203 A 203 (845)
T COG1643 203 A 203 (845)
T ss_pred c
Confidence 4
No 316
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.84 E-value=0.0019 Score=62.82 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=44.8
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
-..++..+.|.+..+.|.++.........+|+|+|++|+||||+++.++..+..
T Consensus 365 G~~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 365 GLEIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 334456888888888888888766666778999999999999999999998864
No 317
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.83 E-value=0.0022 Score=57.41 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=37.2
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...|..+|. .+=+..+++.|+|++|+|||||+.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 344555554 33455788999999999999999999888765556667775
No 318
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.83 E-value=0.0011 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....|+|+|++|+||||+++.++..+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 455799999999999999999999873
No 319
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.0016 Score=54.50 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=26.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.-+|+|.|++|+||||+++.++..+..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 345789999999999999999999998755
No 320
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.83 E-value=0.0015 Score=60.07 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCcccccchHHHHHHHhccC--------C----CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVE--------S----KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~--------~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+++|.+...+.+..++..+ . -.++.++++||+|+|||++|+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 56999999999988777420 0 114678999999999999999999987543
No 321
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.83 E-value=0.0014 Score=55.62 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.+.++|+|+.|.|||||.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999885
No 322
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.82 E-value=0.0015 Score=60.82 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=37.7
Q ss_pred CCCcccccchHHHHHHHhcc-------C-------CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 27 KNQLVGVESTVDEIESLLGV-------E-------SKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~-------~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.++|.+...+.|...+.. . ....+.++++||+|+|||++|+.++..+.
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34689999999988665521 0 01235689999999999999999998764
No 323
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.81 E-value=0.0012 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+++++.|++|+||||+++.++....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999998754
No 324
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.81 E-value=0.00094 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
++|.||+|+|||||++.++..+...|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 68999999999999999998765443
No 325
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.81 E-value=0.0012 Score=54.69 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.++++|.|++|+||||+++.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 326
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0094 Score=60.01 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCcccccchHHHHHHHhccCC-----C-CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHH
Q 037416 28 NQLVGVESTVDEIESLLGVES-----K-GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~-----~-~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
+.++|.+.-+..+..++.... . ..-...+.||.|+|||.||+.++..+.+..+..+-+. ..++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhh
Confidence 458999999999999887411 1 3456889999999999999999998865544444343 1222
Q ss_pred HHHHHHHHhcCCC---CCCchHHHHHhhCCceE-EEEEeCCC
Q 037416 102 RQKLLSNLLKDKN---VIPYIDLNFRRLSRMKV-LIVFDDVT 139 (362)
Q Consensus 102 ~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~-llvlDd~~ 139 (362)
.+ ...+....+ ..+....+-+.++.+|+ +|.||||+
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechh
Confidence 22 222222222 33445567788888875 77799996
No 327
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.80 E-value=0.0023 Score=56.04 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=29.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...++.|+|++|+|||+|+.+++......-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4678999999999999999999887544445666665
No 328
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.79 E-value=0.0014 Score=54.37 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=26.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
++|.|++|+|||+|+.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999887644445566665
No 329
>PRK04328 hypothetical protein; Provisional
Probab=96.79 E-value=0.0026 Score=55.39 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=34.5
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.|.+.|..+=+...++.|.|++|+|||+|+.+++.........++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455555433345778999999999999999999887433445566665
No 330
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.79 E-value=0.0047 Score=57.74 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.++.++|++|+||||++..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999998864
No 331
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.79 E-value=0.0017 Score=58.47 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=25.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...++++.|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999987654
No 332
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0069 Score=57.58 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=31.2
Q ss_pred cccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 32 GVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 32 GR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
++...+..|.+.+.- .-...++++|+|++|+||||++..++..+..
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344445555554321 1123578999999999999999999887644
No 333
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0012 Score=51.96 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+|+|.|++|+||||+++.+++++.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5889999999999999999998643
No 334
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.76 E-value=0.0026 Score=54.82 Aligned_cols=49 Identities=16% Similarity=0.111 Sum_probs=35.6
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..|...|..+=+...++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455555444455788999999999999999999876433445666665
No 335
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.76 E-value=0.0015 Score=52.53 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=27.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
++|+|++|+|||+++..++.........++|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999998765545566655
No 336
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.75 E-value=0.0026 Score=56.99 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=36.7
Q ss_pred HHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 38 DEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..|..+|. .+=+..+++-|+|++|+|||+|+.+++.........++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555554 33345778999999999999999999988765556677776
No 337
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.75 E-value=0.0059 Score=53.23 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh----cCcccceeeecccccccCCCchHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS----GDFECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
..+.++|.|.+|+|||+|+..++++.. .+.+.+++.. ..+......++.+.+..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~----IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA----MGITMEDARFFKDDFEE 125 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE----eccccHHHHHHHHHhhh
Confidence 345679999999999999999887643 1234555554 33335556666666644
No 338
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.75 E-value=0.0031 Score=54.16 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=33.7
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.|.+.+..+=.....++|.|++|+|||+|+.+++.........++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444545433345778999999999999999998876433444566665
No 339
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.74 E-value=0.0027 Score=53.60 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=33.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
+.++|.|++|+|||+|+.++++..... ..+++. .........++.+.+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~----iGer~~Ev~~~~~~~~ 64 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL----IGERGREVTEFIEELK 64 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE----ESECHHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccccc--ceeeee----ccccchhHHHHHHHHh
Confidence 457899999999999999999987533 335554 2222445666666663
No 340
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.74 E-value=0.008 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+++|.|+.|+|||||++.++..+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 455799999999999999999887653
No 341
>PRK03839 putative kinase; Provisional
Probab=96.74 E-value=0.0014 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 342
>PRK15115 response regulator GlrR; Provisional
Probab=96.73 E-value=0.062 Score=51.12 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=36.3
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++|+...+.++.+...........|.|+|++|+|||++|+.+.....
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcC
Confidence 3588888887776665443234455688999999999999998877543
No 343
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.72 E-value=0.015 Score=47.57 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999987655
No 344
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.72 E-value=0.002 Score=61.51 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=55.9
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-C
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-V 115 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 115 (362)
++.+..++. ....+++|+|++|+||||++..+...+......++.+-...+ ..+..+ .+...... .
T Consensus 231 ~~~l~~~~~---~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE-----~~~~~~-----~q~~v~~~~g 297 (486)
T TIGR02533 231 LSRFERLIR---RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVE-----YQIEGI-----GQIQVNPKIG 297 (486)
T ss_pred HHHHHHHHh---cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCee-----eecCCC-----ceEEEccccC
Confidence 334444443 345689999999999999999888876533222222211110 000000 01111111 1
Q ss_pred CCchHHHHHhhCCceEEEEEeCCCCchhhhHhh
Q 037416 116 IPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLI 148 (362)
Q Consensus 116 ~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~ 148 (362)
..-...+...++..|=+|++.++.+.+......
T Consensus 298 ~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~ 330 (486)
T TIGR02533 298 LTFAAGLRAILRQDPDIIMVGEIRDLETAQIAI 330 (486)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHH
Confidence 222344777888889999999998777655444
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.72 E-value=0.0018 Score=58.90 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=38.8
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
.++|++.........+. ..+.+.+.|++|+|||+|++.++..+...|
T Consensus 25 ~~~g~~~~~~~~l~a~~----~~~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 25 VVVGDEEVIELALLALL----AGGHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred eeeccHHHHHHHHHHHH----cCCCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 38999999888877775 334588999999999999999999887443
No 346
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.70 E-value=0.0025 Score=50.97 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=31.2
Q ss_pred ccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 33 VESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 33 R~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-..-++.|.+++. + +++++.|++|+|||||+..+...
T Consensus 22 ~~~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 22 TGEGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCcCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 3467888898884 3 68899999999999999999875
No 347
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.70 E-value=0.0017 Score=53.72 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+..+++|.||+|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 56789999999999999999999875
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.69 E-value=0.0013 Score=54.44 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.|++|+||||+++.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999975
No 349
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.69 E-value=0.0018 Score=56.41 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+|++.|.+|+||||+|+.++..+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998754
No 350
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0039 Score=54.46 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
+..++||||+|.|||-+|+.++....-+|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56799999999999999999999876554
No 351
>PRK09354 recA recombinase A; Provisional
Probab=96.68 E-value=0.0034 Score=56.78 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...|..+|. .+=+..+++-|+|++|+|||+|+.+++......-..++|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 445566664 33445788999999999999999999988766656777776
No 352
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.67 E-value=0.0018 Score=54.68 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+.++|.|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 45778999999999999999998764
No 353
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.67 E-value=0.0041 Score=56.13 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=35.6
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccc
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVR 89 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~ 89 (362)
..+.+.+....++..+|.|.|++|+|||||+..+...+... ...+-+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~D 93 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVD 93 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 34555444334567899999999999999999999988654 3334443333
No 354
>PRK15453 phosphoribulokinase; Provisional
Probab=96.66 E-value=0.0027 Score=55.33 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=25.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+..+|+|.|.+|+||||+++.+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~ 32 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRE 32 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 456899999999999999999999877543
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.66 E-value=0.0017 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 356
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.65 E-value=0.0021 Score=52.86 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+|+|.|++|+|||||+..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998753
No 357
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.64 E-value=0.0025 Score=57.36 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=49.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRM 129 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 129 (362)
....++|.|++|+|||||++.++..+.... ..+.+....+..........+ ...............+.+...++..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l---~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL---FYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE---EecCCCCCcCccCHHHHHHHHhcCC
Confidence 456799999999999999999988764432 233332111111000000000 0000000011122233466677888
Q ss_pred eEEEEEeCCCCchhhhH
Q 037416 130 KVLIVFDDVTCFNQLES 146 (362)
Q Consensus 130 ~~llvlDd~~~~~~~~~ 146 (362)
+-.+++|++...+.++.
T Consensus 219 pd~ii~gE~r~~e~~~~ 235 (308)
T TIGR02788 219 PDRIILGELRGDEAFDF 235 (308)
T ss_pred CCeEEEeccCCHHHHHH
Confidence 88999999987665543
No 358
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.64 E-value=0.0036 Score=53.62 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=24.8
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+.+..++. ...+.+|+||+|+|||+++..+...+
T Consensus 6 Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 3445555553 23378999999999999888888876
No 359
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.63 E-value=0.0027 Score=62.38 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=44.0
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecc
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENV 88 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~ 88 (362)
.+.++|.+.....+...+..+ +.+.++|++|+|||++++.+++.+... |...+++.+.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 456899999999888877632 367799999999999999999987654 3444455433
No 360
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0043 Score=53.66 Aligned_cols=53 Identities=28% Similarity=0.441 Sum_probs=38.9
Q ss_pred CCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 27 KNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
...+=|-+..++++.+..+- +-..++-|.+||++|.|||-||+.++++....|
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 34466788888888876641 112356789999999999999999999754443
No 361
>PRK05439 pantothenate kinase; Provisional
Probab=96.63 E-value=0.0029 Score=56.43 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.4
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.+.+-+|+|.|++|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345778999999999999999999887653
No 362
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.024 Score=56.53 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+++.++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999998763
No 363
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.0031 Score=51.71 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|.|++|+||||+++.++..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34589999999999999999999987543
No 364
>PRK05973 replicative DNA helicase; Provisional
Probab=96.62 E-value=0.0036 Score=53.63 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=28.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
....+++|.|++|+|||+|+.+++.....+...++|++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34668999999999999999999887644434455554
No 365
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.02 Score=48.05 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+.+|-||.|.|||||+..++-+
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4557789999999999999999765
No 366
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.61 E-value=0.0093 Score=59.42 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....|+|+|.+|+|||||++-+..-+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999997753
No 367
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.61 E-value=0.0023 Score=64.49 Aligned_cols=25 Identities=24% Similarity=0.104 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+.+.++|+||.|.|||||.+.++-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 3578999999999999999999765
No 368
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.60 E-value=0.0026 Score=49.98 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=23.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++|.|+|+.|+|||||++.+++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 478999999999999999999998744
No 369
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.59 E-value=0.0051 Score=59.91 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....++|+|++|+|||||++.++..+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998654
No 370
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.59 E-value=0.0042 Score=47.14 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=33.1
Q ss_pred Cccccc----chHHHHHHHhccCCC-CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 29 QLVGVE----STVDEIESLLGVESK-GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 29 ~~vGR~----~el~~l~~~l~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.++|.. ..++.|...+....+ ++-++.++|++|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 366665 444455555544333 45566799999999999999999985
No 371
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.58 E-value=0.0028 Score=54.38 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=28.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+....+.|.|++|+|||||+.+++......-..++|+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 34568999999999999999888877633334455554
No 372
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.57 E-value=0.0014 Score=56.29 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=32.0
Q ss_pred HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeee
Q 037416 40 IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLE 86 (362)
Q Consensus 40 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 86 (362)
|.+.+..+=+...+++|.|++|+|||+|+.+++...-.. -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 444453333346789999999999999999998764333 45566665
No 373
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.57 E-value=0.0032 Score=58.50 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=38.2
Q ss_pred CCCcccccchHHHHHHHhc-------c--CCC-------CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 27 KNQLVGVESTVDEIESLLG-------V--ESK-------GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~-------~--~~~-------~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.+.++|.+.-.+.+...+. . ... ....++++||+|+|||++|+.++..+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~ 142 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV 142 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC
Confidence 4567999999998876551 0 001 1357999999999999999999987643
No 374
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.57 E-value=0.061 Score=51.16 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++|+...++++.+.+.........+.|+|++|+||+++|+.+....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s 186 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS 186 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 458999999998888776433344557799999999999999998754
No 375
>PRK10436 hypothetical protein; Provisional
Probab=96.57 E-value=0.0038 Score=59.05 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=55.6
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-C
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-V 115 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 115 (362)
++.+.+++. ....+|+|+|++|+||||++..+...+... ...++.. -+.. ...+.. ..+...+.. .
T Consensus 207 ~~~l~~~~~---~~~GliLvtGpTGSGKTTtL~a~l~~~~~~-~~~i~Ti-EDPv---E~~l~g-----i~Q~~v~~~~g 273 (462)
T PRK10436 207 LAQFRQALQ---QPQGLILVTGPTGSGKTVTLYSALQTLNTA-QINICSV-EDPV---EIPLAG-----INQTQIHPKAG 273 (462)
T ss_pred HHHHHHHHH---hcCCeEEEECCCCCChHHHHHHHHHhhCCC-CCEEEEe-cCCc---cccCCC-----cceEeeCCccC
Confidence 334555443 456789999999999999988877776433 2222211 0000 000000 011111111 1
Q ss_pred CCchHHHHHhhCCceEEEEEeCCCCchhhhHhh
Q 037416 116 IPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLI 148 (362)
Q Consensus 116 ~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~ 148 (362)
..-...+...++..|=+|++.++.+.+......
T Consensus 274 ~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al 306 (462)
T PRK10436 274 LTFQRVLRALLRQDPDVIMVGEIRDGETAEIAI 306 (462)
T ss_pred cCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHH
Confidence 222334777888899999999998777655443
No 376
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.56 E-value=0.0017 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+++|.|++|+||||+++.+...+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998874
No 377
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.56 E-value=0.0041 Score=50.45 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..+++.|.|++|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4668999999999999999999998765
No 378
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0049 Score=49.53 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
...++|.|+.|.|||||++.++..+... ...+++.... .. ..........+. ....-+.....--.+...+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~-~~--~~~~~~~~~~i~-~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKD-IA--KLPLEELRRRIG-YVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEE-cc--cCCHHHHHhceE-EEeeCCHHHHHHHHHHHHHhcCC
Confidence 4688999999999999999998865432 3334443111 00 000111111000 00000000011111445555668
Q ss_pred EEEEEeCCC---CchhhhHhhccCCCC-CCCcEEEEEeCChHHHhh
Q 037416 131 VLIVFDDVT---CFNQLESLIGSLDRL-TPVSRIIITTRNKQVLRN 172 (362)
Q Consensus 131 ~llvlDd~~---~~~~~~~l~~~~~~~-~~~~~ilitsr~~~~~~~ 172 (362)
-++++|+.. |......+...+... ..+..++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 899999993 333333333333221 123567888877655544
No 379
>PRK06217 hypothetical protein; Validated
Probab=96.54 E-value=0.002 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|.+|+||||+++.++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999863
No 380
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.53 E-value=0.0025 Score=50.64 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+.|+||+|+|||||.+.++.-....
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 3468899999999999999999865433
No 381
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0049 Score=52.60 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=33.6
Q ss_pred cccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 30 LVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+=|=.++++.+.+..+- +-+.++-|.+|||+|.|||-+|+.++++.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 44566667777665431 11335678999999999999999999973
No 382
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.53 E-value=0.0019 Score=54.13 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 383
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.52 E-value=0.0025 Score=52.71 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCccccee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCF 84 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 84 (362)
.+.++|.||+|+|||||+..++......|..++-
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~ 35 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVS 35 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeee
Confidence 3579999999999999999999986444444443
No 384
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.52 E-value=0.0023 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037416 54 LGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~ 74 (362)
|+|.|++|+|||||++.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999975
No 385
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.50 E-value=0.0086 Score=51.60 Aligned_cols=122 Identities=19% Similarity=0.116 Sum_probs=62.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-------CCCc--hH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-------VIPY--ID 120 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~--~~ 120 (362)
....++|+|++|+||||+++.++.-.......+ ++..-+-.........+....++........ ..+. .+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i-~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE-EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 456799999999999999999998765443333 3321110000011122223333333332221 1111 11
Q ss_pred H--HHHhhCCceEEEEEeCCC---Cch---hhhHhhccCCCCCCCcEEEEEeCChHHHhhc
Q 037416 121 L--NFRRLSRMKVLIVFDDVT---CFN---QLESLIGSLDRLTPVSRIIITTRNKQVLRNW 173 (362)
Q Consensus 121 ~--~~~~l~~~~~llvlDd~~---~~~---~~~~l~~~~~~~~~~~~ilitsr~~~~~~~~ 173 (362)
. +.+.+.-+|-++|.|+.- +.. +.-.++..+.. ..+...+++|-+-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 1 566777889999999983 221 12222222211 2345577777766555554
No 386
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.50 E-value=0.0048 Score=59.19 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=37.5
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+..|...|..+=....+++|.|++|+|||+|+.+++.....+-..++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45566666544445788999999999999999999998755545566665
No 387
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.076 Score=45.17 Aligned_cols=179 Identities=20% Similarity=0.266 Sum_probs=90.6
Q ss_pred CCCCCCCccc-ccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccc
Q 037416 23 PRDNKNQLVG-VESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVRE 90 (362)
Q Consensus 23 ~~~~~~~~vG-R~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 90 (362)
.|......+| -++.++++.+.++- +=..++-+.++||+|.|||-||+.++++ ..+.|+.
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-----t~c~fir---- 211 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIR---- 211 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-----cceEEEE----
Confidence 3444444555 46667777665541 1234677999999999999999999986 3333443
Q ss_pred cccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCchh----------------hhHhhccCC-
Q 037416 91 ESQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFNQ----------------LESLIGSLD- 152 (362)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~~----------------~~~l~~~~~- 152 (362)
. +-.++.+.+... . ...... +.-.-..-|.+|+.|++++... .-+++..+.
T Consensus 212 v-----sgselvqk~ige----g--srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 212 V-----SGSELVQKYIGE----G--SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred e-----chHHHHHHHhhh----h--HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 1 112333322111 0 011111 1122223477888888853321 112222221
Q ss_pred -CCCCCcEEEE-EeCCh----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 153 -RLTPVSRIII-TTRNK----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 153 -~~~~~~~ili-tsr~~----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
...++.++|. |.|-+ .+.....-...+++++-+.+...+++.-....-+.... -..+.|++...|..-|
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg---i~l~kiaekm~gasga 355 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG---INLRKIAEKMPGASGA 355 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc---cCHHHHHHhCCCCccc
Confidence 1234556665 44532 11211123346788888888888887755433221110 0145566666654433
No 388
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.49 E-value=0.011 Score=48.15 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHhhCCceEEEEEeCC----CCchhhhHh--hccCCCCCCCcEEEEEeCChHHHhhcC
Q 037416 122 NFRRLSRMKVLIVFDDV----TCFNQLESL--IGSLDRLTPVSRIIITTRNKQVLRNWG 174 (362)
Q Consensus 122 ~~~~l~~~~~llvlDd~----~~~~~~~~l--~~~~~~~~~~~~ilitsr~~~~~~~~~ 174 (362)
+.+..-++|-+++=|+- +....|+-+ +..++ ..|..|++.|.+..+...+.
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 55666778999999976 222233332 23333 45678999999988887763
No 389
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.48 E-value=0.0026 Score=53.63 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+++|.|++|+|||||++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456899999999999999999999753
No 390
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.48 E-value=0.0021 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999986
No 391
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.48 E-value=0.0022 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.|++|+||||+|+.++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999975
No 392
>PRK14527 adenylate kinase; Provisional
Probab=96.47 E-value=0.0029 Score=52.74 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....+++|.|++|+||||+++.++.++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999875
No 393
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.47 E-value=0.0051 Score=54.13 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=28.0
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISGDFE 80 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~ 80 (362)
..+..++.|.|++|+|||||+..++..+.....
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 345788999999999999999999998866543
No 394
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.47 E-value=0.011 Score=52.25 Aligned_cols=37 Identities=14% Similarity=-0.008 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 86 (362)
...+++|.|++|+|||+++.+++...... ...++|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 45688999999999999999998886433 34555655
No 395
>PRK00625 shikimate kinase; Provisional
Probab=96.47 E-value=0.0027 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999864
No 396
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.47 E-value=0.002 Score=52.16 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
++|.|++|+||||+++.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999986
No 397
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.47 E-value=0.0031 Score=57.26 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=40.6
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+...=..+||.+.....|.-.+. +++..-|+|.|+.|+|||++++.+++-+.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~--~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI--DPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc--CCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34344568999998888887766 34555688999999999999999987653
No 398
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.25 Score=43.80 Aligned_cols=66 Identities=15% Similarity=0.255 Sum_probs=41.2
Q ss_pred CceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh-HHHhhc-CCCceEEcCCCCHHHHHHHHH
Q 037416 128 RMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK-QVLRNW-GVSKIYEMQALEYHHALELFC 194 (362)
Q Consensus 128 ~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~ll~ 194 (362)
+++-++|+|+++ +......++-.+..-+.++.+|++|.+. .+.+.+ +....+.+.+ +.++..+++.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 345699999997 4445666666665545556666666543 444443 4456788876 6666666664
No 399
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.47 E-value=0.0098 Score=55.96 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=51.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-------CCCchHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-------VIPYIDL 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~ 121 (362)
..+.++|.|++|+|||+|+..++..... +.+.+++.. .........++.+.+...-..... ..+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l----iGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG----VGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc----CCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 3556899999999999999999887653 345555543 222245566666666432111100 1111111
Q ss_pred ---------HHHhh---CCceEEEEEeCC
Q 037416 122 ---------NFRRL---SRMKVLIVFDDV 138 (362)
Q Consensus 122 ---------~~~~l---~~~~~llvlDd~ 138 (362)
+.+++ .++++|+++|++
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 33333 378999999999
No 400
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.46 E-value=0.0047 Score=51.77 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=25.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
....++.|.|.+|+|||||++.+...+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 457789999999999999999999987543
No 401
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.46 E-value=0.0063 Score=54.36 Aligned_cols=89 Identities=21% Similarity=0.223 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCc--ccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDF--ECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
...++|.|++|+||||++..++..+.... ..++.+-...+......... .+..........+.+...++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~~~~~~~~~~l~~aLR~ 203 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTSDDAISMTRLLKATLRL 203 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEecCCCCCHHHHHHHHhcC
Confidence 44688999999999999999998875421 22222221111000000000 000011111223346677888
Q ss_pred ceEEEEEeCCCCchhhhHh
Q 037416 129 MKVLIVFDDVTCFNQLESL 147 (362)
Q Consensus 129 ~~~llvlDd~~~~~~~~~l 147 (362)
.|=.|++.++.+.+.++.+
T Consensus 204 ~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 204 RPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred CCCEEEEeccCCHHHHHHH
Confidence 8889999999776665544
No 402
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.45 E-value=0.0022 Score=54.64 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+|+|.|++|+|||||++.++..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999998875
No 403
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.44 E-value=0.0036 Score=47.63 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....+|++.|+=|.|||||++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999986
No 404
>PRK13947 shikimate kinase; Provisional
Probab=96.44 E-value=0.0028 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999874
No 405
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.054 Score=53.21 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=87.3
Q ss_pred ccccchHHHHHHHhccC---C----CCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHHH
Q 037416 31 VGVESTVDEIESLLGVE---S----KGVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~---~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
.+++.-+..+.+.+... + .....+.++|++|+||||+++.++.++.-++ ..-++-. ..........-+
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el----~~~s~~~~etkl 479 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYEL----VAESASHTETKL 479 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHH----hhcccchhHHHH
Confidence 45566666666666531 1 1367899999999999999999999876552 1111111 111011111111
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc-------hh------hhHhhc--cCCCCCCCcEEEEEeCC-
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF-------NQ------LESLIG--SLDRLTPVSRIIITTRN- 166 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------~~------~~~l~~--~~~~~~~~~~ilitsr~- 166 (362)
..+ +.+.-.-.+.+|.+=|++.. .+ +..++. ......+...++.|+.+
T Consensus 480 ~~~----------------f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~ 543 (953)
T KOG0736|consen 480 QAI----------------FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSI 543 (953)
T ss_pred HHH----------------HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccc
Confidence 111 11122235666666655211 11 122222 11222333334444432
Q ss_pred hHHHhhcC--CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 167 KQVLRNWG--VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 167 ~~~~~~~~--~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
+.+..... ..+.++++.++++|..++++......... .+-..+.++.+|.|.-+.
T Consensus 544 ~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n---~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 544 EDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN---QDVNLKQLARKTSGFSFG 600 (953)
T ss_pred ccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc---hHHHHHHHHHhcCCCCHH
Confidence 23322221 34578899999999999998776332222 233455667777665543
No 406
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.024 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....++|.||-|.|||||++.++--+
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998843
No 407
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.43 E-value=0.011 Score=55.46 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=50.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHHHHHHHHHHhcCCC-------CCCchHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-------VIPYIDL 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~ 121 (362)
..+.++|.|++|+|||+|+..++.....+. +.+++.. .........++.+.+...-..... ..+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~l----iGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r 218 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG----VGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGAR 218 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE----eccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 355689999999999999999988765432 3344433 222245566666666543211100 1111111
Q ss_pred ---------HHHhh---CCceEEEEEeCC
Q 037416 122 ---------NFRRL---SRMKVLIVFDDV 138 (362)
Q Consensus 122 ---------~~~~l---~~~~~llvlDd~ 138 (362)
+-+++ +++++|+++|++
T Consensus 219 ~~a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 219 LRVALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecch
Confidence 33333 678999999998
No 408
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.43 E-value=0.024 Score=53.78 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+++++.|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 57899999999999999999998763
No 409
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.42 E-value=0.0031 Score=57.05 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|..-..++|.+.....+.-.+. ..+...+++.|++|+|||++++.++.-+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~--~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAI--DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHh--ccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3344568999999988775443 1333459999999999999999998875
No 410
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.42 E-value=0.0024 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999864
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.42 E-value=0.0063 Score=52.10 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.|.+.+..+=....++.|.|++|+|||+++.+++...-..-..++|++
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344445433335778999999999999999999887533434555554
No 412
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.41 E-value=0.0034 Score=46.43 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIF 72 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~ 72 (362)
...++|.|++|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4678999999999999999986
No 413
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.40 E-value=0.013 Score=52.86 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=34.4
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc------Ccccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG------DFECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~ 86 (362)
..+..+|..+=....++.|+|++|+|||+|+.+++..... .-..++|+.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3455555433345778899999999999999999887532 123677776
No 414
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.40 E-value=0.1 Score=50.01 Aligned_cols=49 Identities=29% Similarity=0.399 Sum_probs=38.0
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++|......++.+.+.........+.|.|.+|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589988888888776654344455688999999999999988877543
No 415
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.37 E-value=0.0037 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|.+|+||||+++.++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999974
No 416
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0027 Score=50.65 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIF 72 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~ 72 (362)
.|.|+|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999988
No 417
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.36 E-value=0.0094 Score=56.92 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=47.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHH-------
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDL------- 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------- 121 (362)
..+..+|+|++|+|||+|++.+++.+.. +.++.+++..+.+- +....++.+.+-..+.......+....
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER---peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER---PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc---hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 3456789999999999999999987643 33444444433332 344444443331111111111111100
Q ss_pred --HHHhh--CCceEEEEEeCCC
Q 037416 122 --NFRRL--SRMKVLIVFDDVT 139 (362)
Q Consensus 122 --~~~~l--~~~~~llvlDd~~ 139 (362)
.-+++ .++.+||++|++-
T Consensus 492 i~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCch
Confidence 22222 5789999999983
No 418
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.36 E-value=0.0077 Score=54.00 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=30.8
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..+...+........+++|.|++|+|||||+..+...+...
T Consensus 21 ~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~ 61 (300)
T TIGR00750 21 KQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR 61 (300)
T ss_pred HHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 33444444334568899999999999999999999876544
No 419
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.36 E-value=0.0051 Score=60.03 Aligned_cols=101 Identities=12% Similarity=0.057 Sum_probs=57.3
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC
Q 037416 35 STVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN 114 (362)
Q Consensus 35 ~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 114 (362)
..++.+.+++. ....+|+|+|++|+||||++..+...+... ...++-. -+... ..+.. ..+...+..
T Consensus 303 ~~~~~l~~~~~---~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~ti-EdpvE---~~~~~-----~~q~~v~~~ 369 (564)
T TIGR02538 303 DQKALFLEAIH---KPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTA-EDPVE---INLPG-----INQVNVNPK 369 (564)
T ss_pred HHHHHHHHHHH---hcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEe-cCCce---ecCCC-----ceEEEeccc
Confidence 33445555553 446789999999999999998888776432 2222211 00000 00000 011111111
Q ss_pred -CCCchHHHHHhhCCceEEEEEeCCCCchhhhHhh
Q 037416 115 -VIPYIDLNFRRLSRMKVLIVFDDVTCFNQLESLI 148 (362)
Q Consensus 115 -~~~~~~~~~~~l~~~~~llvlDd~~~~~~~~~l~ 148 (362)
...-...+...++..|=+|++.++.+.+......
T Consensus 370 ~g~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~ 404 (564)
T TIGR02538 370 IGLTFAAALRSFLRQDPDIIMVGEIRDLETAEIAI 404 (564)
T ss_pred cCCCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHH
Confidence 1223344777888899999999998877655444
No 420
>PRK14530 adenylate kinase; Provisional
Probab=96.35 E-value=0.0034 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|+|.|++|+||||+++.++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999886
No 421
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.13 Score=47.69 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
-.+-+.+.||+|.|||.|++.++-...
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~ 211 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESG 211 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhc
Confidence 356688999999999999999999754
No 422
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=96.34 E-value=0.012 Score=51.22 Aligned_cols=52 Identities=23% Similarity=0.194 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCchHHHHH-HHHHHHhhcCcccc-eeeecccccccCCCchHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIA-RAIFHKISGDFECS-CFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
+.+.++|.|++|+|||+|+ ..+++.. +.+.. ++.. +. .......++.+.+..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~-iG---er~~ev~e~~~~~~~ 121 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVA-IG---QKASTVAQVVKTLEE 121 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEe-cc---cchHHHHHHHHHHHh
Confidence 3456899999999999996 4444432 22334 3333 22 224456666666653
No 423
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0036 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+|+|-|+-|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 56899999999999999999999876
No 424
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.33 E-value=0.013 Score=53.00 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=34.5
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~ 86 (362)
..+...|..+=....++.|+|++|+|||+|+.+++...... -..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 45555554333457788899999999999999999874321 13566776
No 425
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.33 E-value=0.013 Score=51.51 Aligned_cols=112 Identities=16% Similarity=0.118 Sum_probs=59.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC---CCCc------hH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN---VIPY------ID 120 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~------~~ 120 (362)
....++|.|++|+|||||++.++..+... ...+++.. ..... .....++...+ . ...+.. .... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~-~d~~~ei~~~~-~-~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGI-VDERSEIAGCV-N-GVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeec-chhHHHHHHHh-c-ccccccccccccccccchHHH
Confidence 34678999999999999999999887544 22233321 11110 00112222111 0 011111 0000 11
Q ss_pred HHHHhhC-CceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHH
Q 037416 121 LNFRRLS-RMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQV 169 (362)
Q Consensus 121 ~~~~~l~-~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~ 169 (362)
-+...+. ..|-++++|++.....+..+...+. .+..+|+|+.+..+
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 1222222 4688999999976666666655543 35678888876543
No 426
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.32 E-value=0.0033 Score=50.84 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037416 54 LGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~ 74 (362)
|+|+|..|+|||||+..+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 427
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.32 E-value=0.009 Score=55.60 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLL 106 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (362)
....++|.|++|+|||||++.++..... +.+++.. .........++.+.++
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~l----IGER~rEv~efi~~~l 211 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVGL----VGERGREVKEFIEEIL 211 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEEEE----EcCChHHHHHHHHHhh
Confidence 3457899999999999999998864322 3344432 2222444555655543
No 428
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=96.32 E-value=0.052 Score=50.38 Aligned_cols=107 Identities=22% Similarity=0.180 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhhccCCCC-CCCCcccccchHHHHHHHhcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 8 DVVNHILKRLDEVFQPRD-NKNQLVGVESTVDEIESLLGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 8 ~i~~~~~~~~~~~~~~~~-~~~~~vGR~~el~~l~~~l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
+....|++.++.---|.. ....-|||+.+++.+.+-|.. ..++...-+|.|.=|.|||.+++.+......+--.+..+
T Consensus 4 r~~~~ii~aLr~GvVP~~Gl~~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~fvvs~v 83 (416)
T PF10923_consen 4 RDRRAIINALRAGVVPRIGLDHIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEKGFVVSEV 83 (416)
T ss_pred HHHHHHHHHHhCCCCCcccCcceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcCCEEEEE
Confidence 344566666665321222 234469999999999988765 345677788999999999999999998865442233444
Q ss_pred eccccccc--CCCchHHHHHHHHHHHhcCCC
Q 037416 86 ENVREESQ--RPGGLACLRQKLLSNLLKDKN 114 (362)
Q Consensus 86 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 114 (362)
....+..- .......+++.++..+.....
T Consensus 84 ~ls~e~~lh~~~g~~~~~Yr~l~~nL~t~~~ 114 (416)
T PF10923_consen 84 DLSPERPLHGTGGQLEALYRELMRNLSTKTK 114 (416)
T ss_pred ecCCCcccccccccHHHHHHHHHHhcCCCCC
Confidence 32221110 022577788888887665443
No 429
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.32 E-value=0.0055 Score=50.96 Aligned_cols=43 Identities=30% Similarity=0.381 Sum_probs=31.6
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.++|.+.....|.-+.. +.+-++++|++|+|||++|+.+..-+
T Consensus 4 dI~GQe~aKrAL~iAAa----G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAA----GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CSSSTHHHHHHHHHHHH----CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhcCcHHHHHHHHHHHc----CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 46787777777766554 34679999999999999999998753
No 430
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.32 E-value=0.016 Score=54.29 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=50.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecccccccCCCchHHHHHHHHHHHhcCC------C-CCCchHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENVREESQRPGGLACLRQKLLSNLLKDK------N-VIPYIDL 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~ 121 (362)
+.+.++|.|++|+|||+|+..++.....+ -..+++.. + ........++++.+...-.... . ..+....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~al-I---GER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R 217 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG-V---GERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEE-e---cCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHH
Confidence 45568999999999999999998876433 23444433 2 2224456666666643211111 0 1111111
Q ss_pred ---------HHHhh---CCceEEEEEeCC
Q 037416 122 ---------NFRRL---SRMKVLIVFDDV 138 (362)
Q Consensus 122 ---------~~~~l---~~~~~llvlDd~ 138 (362)
+-+++ +++++|+++|++
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 218 MRVALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCeeEEEecch
Confidence 33333 468999999999
No 431
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.30 E-value=0.0065 Score=50.37 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....++|.|+.|+||||+++.++..+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4567999999999999999999887653
No 432
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.29 E-value=0.012 Score=51.70 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+..+++=|+||.|+|||++|.+++-........++|++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 44677779999999999999999988777767888887
No 433
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.29 E-value=0.017 Score=53.16 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=28.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh--hcCcccceeee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI--SGDFECSCFLE 86 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~--~~~~~~~~~~~ 86 (362)
++++|.|.+|+|||.||..++.++ .......++++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999998 45555555554
No 434
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.29 E-value=0.025 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=21.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.++|.|++|+|||++|..++.++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999998875
No 435
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0037 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|.|.|++|||||||.+-++--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999764
No 436
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.28 E-value=0.0077 Score=49.07 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=28.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~ 86 (362)
...+.+.||+|+|||.+|+.+++.+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 34688999999999999999999987 5544444444
No 437
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.27 E-value=0.0047 Score=49.15 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
++.|.|.+|+||||+++.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999875
No 438
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.27 E-value=0.0041 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+|+|++|+||||+++.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 439
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=96.26 E-value=0.0053 Score=54.95 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=39.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeeecccccccCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSN 108 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (362)
..-+++.|.+|+|||.+++++.+.+. .+-..++|.- .......-.+++..+...
T Consensus 147 GgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaG----vGERtREGndLy~Em~es 201 (468)
T COG0055 147 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAG----VGERTREGNDLYHEMKES 201 (468)
T ss_pred CceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEe----ccccccchHHHHHHHHhc
Confidence 44689999999999999999999864 5556666665 333355666777777544
No 440
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.26 E-value=0.0097 Score=55.54 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+.|.||+|+|||||++.+.--
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcc
Confidence 457899999999999999998654
No 441
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.26 E-value=0.011 Score=53.09 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=48.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceee-ecccccccCCCchHHHHHHHHHHHhc-CCCCCCchHHHHHhhCC
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDF-ECSCFL-ENVREESQRPGGLACLRQKLLSNLLK-DKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~ 128 (362)
..++|.|++|+||||+++.++..+.... +..+.. -...+... ... ..... ........+.+...++-
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~-~~~---------n~v~l~~~~~~~~~~lv~~aLR~ 214 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC-AAE---------NAVALHTSDTVDMARLLKSTMRL 214 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccccc-CCC---------CEEEeccCCCcCHHHHHHHHhCC
Confidence 4588999999999999999988764221 222222 11111000 000 00000 01122233346677888
Q ss_pred ceEEEEEeCCCCchhhhHhh
Q 037416 129 MKVLIVFDDVTCFNQLESLI 148 (362)
Q Consensus 129 ~~~llvlDd~~~~~~~~~l~ 148 (362)
+|-.+++.++...+.+..+.
T Consensus 215 ~PD~IivGEiRg~ea~~~l~ 234 (323)
T PRK13833 215 RPDRIIVGEVRDGAALTLLK 234 (323)
T ss_pred CCCEEEEeecCCHHHHHHHH
Confidence 88899999997666665443
No 442
>PRK13949 shikimate kinase; Provisional
Probab=96.25 E-value=0.0042 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999864
No 443
>PRK14529 adenylate kinase; Provisional
Probab=96.25 E-value=0.017 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhh
Q 037416 54 LGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
|+|.|++|+||||+++.++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999999864
No 444
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.25 E-value=0.0057 Score=54.15 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+-+|+|.|+.|+||||+++.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4577899999999999999988776654
No 445
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.23 E-value=0.002 Score=53.41 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~ 73 (362)
+++|+|+.|.||||+++.++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999999984
No 446
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.22 E-value=0.024 Score=47.35 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....++|.|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998765
No 447
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.22 E-value=0.031 Score=56.54 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.++++|.|++|+||||+++.+...+...
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 4588999999999999999998876554
No 448
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0042 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+-|+|+|.+|+|||||+..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4458999999999999999999763
No 449
>PLN02200 adenylate kinase family protein
Probab=96.21 E-value=0.0056 Score=52.68 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+.+++|.|++|+||||+++.++..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999875
No 450
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=96.19 E-value=0.015 Score=54.81 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeeecccccccCCCchHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
..+.++|.|.+|+|||+|+..++.... .+.+.+++.. .........++...+..
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~l----IGERgrEv~efi~~~~~ 214 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKE 214 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEE----eccCchHHHHHHHHHHh
Confidence 356689999999999999999988743 3335555554 33324456667766655
No 451
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.19 E-value=0.0044 Score=52.00 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+.++++.|++|+|||+++..+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~ 40 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG 40 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc
Confidence 35688899999999999999999988764
No 452
>PRK13768 GTPase; Provisional
Probab=96.19 E-value=0.0069 Score=52.83 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+++|.|++|+||||++..++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 478899999999999999999887654
No 453
>PRK14531 adenylate kinase; Provisional
Probab=96.18 E-value=0.0049 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.|+|.|++|+||||+++.++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999975
No 454
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.18 E-value=0.0042 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++|.||+|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999987643
No 455
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.18 E-value=0.0046 Score=55.49 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++++.|++|+||||+|+.++.++
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence 3578899999999999999999876
No 456
>PRK06761 hypothetical protein; Provisional
Probab=96.18 E-value=0.0063 Score=53.52 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++++|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999987643
No 457
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0044 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
...+++|.||+|+|||||.+.+..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 456899999999999999998754
No 458
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.16 E-value=0.0048 Score=53.17 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEcCCCchHHHHHHHHHHHhhcCcccceeeecccc
Q 037416 56 IWGISGIGKTAIARAIFHKISGDFECSCFLENVRE 90 (362)
Q Consensus 56 I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 90 (362)
|.||+|+||||+++.+.+.+... ...+.+.|.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~-~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN-GRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc-cCCceEEEcch
Confidence 67999999999999999987655 34455554554
No 459
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.16 E-value=0.0061 Score=49.72 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=29.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
..|.|-|+.|+|||+|....+..+++.|...+.-
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 6899999999999999999999998887655544
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=96.15 E-value=0.0053 Score=51.27 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998864
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.15 E-value=0.009 Score=57.35 Aligned_cols=48 Identities=19% Similarity=0.067 Sum_probs=34.2
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH-hhcCcccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK-ISGDFECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~-~~~~~~~~~~~~ 86 (362)
.|.+.+..+=...+.+.|.|++|+|||+|+.+++.. +.+.-..++|+.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs 57 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVT 57 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344555433345789999999999999999999876 343235666665
No 462
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.15 E-value=0.0089 Score=47.94 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.+..++.++|.+|.||||+|..+...+... .+.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~-G~~~y~L 57 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAK-GYHVYLL 57 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHc-CCeEEEe
Confidence 345688999999999999999999998765 3444443
No 463
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.14 E-value=0.027 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...++|+|++|+|||||++.++..+
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4568999999999999999998864
No 464
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.14 E-value=0.0044 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
..+.++|.|+.|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999877
No 465
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=96.13 E-value=0.014 Score=54.64 Aligned_cols=85 Identities=19% Similarity=0.222 Sum_probs=51.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC-------CCCchHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN-------VIPYIDL 121 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~ 121 (362)
..+.++|.|++|+|||+|+.+++.... .+.+.++|.. .........++.+.+...-..... ..+....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~----iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r 212 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCG----IGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGAR 212 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEE----eccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHH
Confidence 355689999999999999999988754 3335555553 333245566666666443211110 1111111
Q ss_pred ---------HHHhh---CCceEEEEEeCC
Q 037416 122 ---------NFRRL---SRMKVLIVFDDV 138 (362)
Q Consensus 122 ---------~~~~l---~~~~~llvlDd~ 138 (362)
+-+++ +++++|+++||+
T Consensus 213 ~~~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 213 FRVGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 33332 468999999999
No 466
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.12 E-value=0.028 Score=54.15 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHhhCCceEEEEEeCCC---CchhhhHhhccCCCCCCCcEEEEEeCChHHHhhcCCCceEEcCC
Q 037416 122 NFRRLSRMKVLIVFDDVT---CFNQLESLIGSLDRLTPVSRIIITTRNKQVLRNWGVSKIYEMQA 183 (362)
Q Consensus 122 ~~~~l~~~~~llvlDd~~---~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~ 183 (362)
+...+...+-++|||+-- |.+..+.+...+... .+.+|+.|.+..+..... ...+.+.+
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 455566788999999883 334444444433322 246899999888877753 34444443
No 467
>COG1672 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.12 E-value=0.014 Score=53.87 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=45.6
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..|++|++|++.|...+. .+....++|+|+.=+|||+|++.+.......+..+....
T Consensus 2 ~~f~dRE~El~~L~~~~~--~~~~~~~~i~G~rrvGKTsLl~~~~~~~~~~~~~~~~~~ 58 (359)
T COG1672 2 MKFFDREKELEELLKIIE--SEPPSIVFIYGRRRVGKTSLLKEFIKEKLGIYILVDFYI 58 (359)
T ss_pred cchhhHHHHHHHHHHHHh--cCCCeEEEEEcccccCHHHHHHHHHhcCCCcceEEEeec
Confidence 359999999999999986 334557999999999999999999997665544444443
No 468
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0057 Score=51.69 Aligned_cols=25 Identities=40% Similarity=0.456 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....++|+|++|+|||||++.++--
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3557899999999999999999764
No 469
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.11 E-value=0.0048 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+|.|++|+||||+++.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999974
No 470
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.11 E-value=0.0056 Score=50.04 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|+.|+||||+++.++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34589999999999999999999753
No 471
>PLN02165 adenylate isopentenyltransferase
Probab=96.10 E-value=0.0054 Score=54.96 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+++|.||+|+|||+|+..++..+.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 4566899999999999999999999864
No 472
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.10 E-value=0.0081 Score=50.71 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=26.3
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..+.+++.+.|+.|+|||||+..+...+..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 356899999999999999999999988654
No 473
>PRK13946 shikimate kinase; Provisional
Probab=96.09 E-value=0.0056 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.|++.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999999873
No 474
>PRK14532 adenylate kinase; Provisional
Probab=96.09 E-value=0.005 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+|.|++|+||||+++.++.++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
No 475
>PRK10646 ADP-binding protein; Provisional
Probab=96.09 E-value=0.0089 Score=47.34 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=30.9
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 34 ESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 34 ~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++..++.+.+...-....+|.+.|.=|.|||||++.+++.+.
T Consensus 11 ~~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 11 EQATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3445555555543223345899999999999999999999863
No 476
>PRK13948 shikimate kinase; Provisional
Probab=96.08 E-value=0.0066 Score=49.98 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.....|++.|+.|+||||+++.++.++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457799999999999999999999874
No 477
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.08 E-value=0.025 Score=56.55 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=36.9
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...|..+|. .+=...+++.|+|++|+|||+|+.+++......-..++|+.
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 455666664 33345788999999999999999998877555546677776
No 478
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.08 E-value=0.0073 Score=39.73 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.+|+|+.|+||||+.-.+..-+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 689999999999999988776543
No 479
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.022 Score=50.19 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=26.5
Q ss_pred ccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 33 VESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 33 R~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+..-+-+..++. ..-.++|+|++|+|||||+.+++-.+
T Consensus 75 rs~~P~lId~~fr----~g~~~~~~gdsg~GKttllL~l~Ial 113 (402)
T COG3598 75 RSNSPQLIDEFFR----KGYVSILYGDSGVGKTTLLLYLCIAL 113 (402)
T ss_pred cccChhhhhHHhh----cCeeEEEecCCcccHhHHHHHHHHHH
Confidence 3333444455553 33456789999999999998887653
No 480
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.07 E-value=0.0058 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.|+.|+||||+++.+++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 481
>PRK06851 hypothetical protein; Provisional
Probab=96.07 E-value=0.0095 Score=54.38 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc-Ccccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~ 86 (362)
+..++++|.|++|+|||||++.+++.+.. .++...+++
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~ 66 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHC 66 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 45788999999999999999999998854 455555555
No 482
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.06 E-value=0.021 Score=56.50 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....++|+|++|+|||||++-++..+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34578999999999999999997753
No 483
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.05 E-value=0.0079 Score=54.52 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=36.0
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+||.+.....|.-.+. +++...++|.|++|+|||||++.+..-+
T Consensus 5 ~ivgq~~~~~al~~~~~--~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVI--DPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhc--CCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 47899998888766554 3445568899999999999999998765
No 484
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.0077 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|+|-+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999998876
No 485
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.023 Score=53.09 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+.++|.|++|+|||||+..++....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 456789999999999999998887653
No 486
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=96.02 E-value=0.22 Score=47.53 Aligned_cols=49 Identities=24% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++|....+..+.+.+.........+.|+|++|+||+++|+.+.....
T Consensus 143 ~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~ 191 (457)
T PRK11361 143 GHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSR 191 (457)
T ss_pred cceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCC
Confidence 3578888877777776654344556788999999999999999877543
No 487
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.027 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+-|..|||+|.|||-+|++++.+-.
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SG 409 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSG 409 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcC
Confidence 67799999999999999999999743
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.02 E-value=0.041 Score=48.28 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=27.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...+++.|++|+||||++..++..+...-..+.++.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~ 110 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 110 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999888754323344443
No 489
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.01 E-value=0.005 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
+..++|||++|+||||+|+.+..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 56799999999999999998853
No 490
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.01 E-value=0.0076 Score=48.24 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++.|.|+.|+|||||+..++..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999988654
No 491
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.01 E-value=0.0076 Score=52.20 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+|+|.|.+|+||||++..+...+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987654
No 492
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=96.01 E-value=0.026 Score=53.37 Aligned_cols=83 Identities=25% Similarity=0.130 Sum_probs=46.6
Q ss_pred CeEEEEEEcCCCchHHHHHH-HHHHHhhcCccc-ceeeecccccccCCCchHHHHHHHHHHHhcCCC-------CCCchH
Q 037416 50 GVYALGIWGISGIGKTAIAR-AIFHKISGDFEC-SCFLENVREESQRPGGLACLRQKLLSNLLKDKN-------VIPYID 120 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~ 120 (362)
..+.++|.|.+|+|||+||. .++++- +.+. +++.. ..+......++.+.+...-..... ..+...
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~q~--~~dv~~V~~~----IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~ 234 (497)
T TIGR03324 161 RGQRELILGDRQTGKTAIAIDTILNQK--GRNVLCIYCA----IGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGL 234 (497)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHHhc--CCCcEEEEEE----eccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHH
Confidence 35568999999999999964 555542 2243 45544 222244566666666443211111 011110
Q ss_pred H---------HHHh--hCCceEEEEEeCC
Q 037416 121 L---------NFRR--LSRMKVLIVFDDV 138 (362)
Q Consensus 121 ~---------~~~~--l~~~~~llvlDd~ 138 (362)
. +-++ -+++++|+++||+
T Consensus 235 r~~ap~~a~aiAEyfrd~G~~VLlv~Ddl 263 (497)
T TIGR03324 235 QYIAPYAATSIGEHFMEQGRDVLIVYDDL 263 (497)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCh
Confidence 0 2222 2578999999999
No 493
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.00 E-value=0.0075 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...|+|.|++|+||||+|..+..+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456899999999999999998886
No 494
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.00 E-value=0.019 Score=60.52 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=28.2
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 35 STVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 35 ~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+|.+.+. +.++++|+|++|+||||.+=.++....
T Consensus 70 ~~~~~Il~~l~----~~~vvii~g~TGSGKTTqlPq~lle~~ 107 (1283)
T TIGR01967 70 AKREDIAEAIA----ENQVVIIAGETGSGKTTQLPKICLELG 107 (1283)
T ss_pred HHHHHHHHHHH----hCceEEEeCCCCCCcHHHHHHHHHHcC
Confidence 33455666664 455899999999999998887777643
No 495
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=95.99 E-value=0.02 Score=53.86 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=32.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccc-eeeecccccccCCCchHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECS-CFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
..+.++|.|.+|+|||+||.....+..+. +.. ++.. ..+......++.+.+..
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~~~-dv~cV~~~----IGer~rev~e~~~~l~~ 193 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQKGQ-NVICVYVA----IGQKASSVAQVVTTLQE 193 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcccC-CeEEEEEE----ecCCchHHHHHHHHhhc
Confidence 34568999999999999966544433332 433 4443 22224556666666644
No 496
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.99 E-value=0.038 Score=55.79 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...++|+|++|+|||||++-++.-+
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998754
No 497
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.98 E-value=0.0088 Score=52.60 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=28.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+++.|.|.+|+|||||+..++..+.... .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 4789999999999999999999998775 444443
No 498
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.98 E-value=0.013 Score=49.20 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=26.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVR 89 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~ 89 (362)
.|.|+|-||+||||++..++.++.....+.+.+...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 4789999999999999997777655433455544333
No 499
>PRK14528 adenylate kinase; Provisional
Probab=95.98 E-value=0.0069 Score=50.18 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.++|.|++|+||||+++.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998875
No 500
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.95 E-value=0.0065 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q 037416 54 LGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
|+|.|++|+||||+++.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999975
Done!