Query 037416
Match_columns 362
No_of_seqs 143 out of 1714
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1E-38 3.4E-43 308.1 23.8 296 31-340 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3E-36 1E-40 317.6 23.2 305 22-339 118-453 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 1.7E-35 5.9E-40 289.0 18.5 294 23-334 119-448 (591)
4 1vt4_I APAF-1 related killer D 100.0 1.5E-33 5.1E-38 278.2 16.4 297 28-357 128-458 (1221)
5 2fna_A Conserved hypothetical 99.9 4.2E-21 1.4E-25 175.3 18.3 291 23-331 8-356 (357)
6 2qen_A Walker-type ATPase; unk 99.9 4.8E-21 1.6E-25 174.5 17.1 290 22-332 6-349 (350)
7 1w5s_A Origin recognition comp 99.8 2.7E-18 9.2E-23 159.9 20.4 285 21-316 15-371 (412)
8 1fnn_A CDC6P, cell division co 99.7 1.7E-15 5.9E-20 139.7 24.3 304 23-338 12-387 (389)
9 2qby_B CDC6 homolog 3, cell di 99.7 1.9E-15 6.4E-20 139.3 21.2 275 27-316 19-339 (384)
10 2qby_A CDC6 homolog 1, cell di 99.7 9.4E-16 3.2E-20 141.2 18.2 283 22-316 14-348 (386)
11 2v1u_A Cell division control p 99.6 8.5E-15 2.9E-19 134.9 19.5 282 23-316 14-351 (387)
12 1njg_A DNA polymerase III subu 99.6 1.2E-13 3.9E-18 118.7 16.1 196 24-232 19-231 (250)
13 2chg_A Replication factor C sm 99.5 2E-13 6.9E-18 115.5 16.4 189 23-230 12-205 (226)
14 1sxj_B Activator 1 37 kDa subu 99.5 2.6E-12 8.8E-17 115.3 17.3 187 24-229 17-210 (323)
15 1hqc_A RUVB; extended AAA-ATPa 99.3 3.6E-11 1.2E-15 108.0 15.9 264 24-328 8-309 (324)
16 2chq_A Replication factor C sm 99.3 4.8E-11 1.7E-15 106.7 16.1 186 25-229 14-204 (319)
17 1iqp_A RFCS; clamp loader, ext 99.3 1.3E-11 4.6E-16 110.8 12.4 189 23-230 20-213 (327)
18 1jr3_A DNA polymerase III subu 99.2 1.5E-10 5.1E-15 106.0 15.9 192 26-230 14-222 (373)
19 3pfi_A Holliday junction ATP-d 99.2 4.3E-10 1.5E-14 101.5 18.2 258 26-324 27-321 (338)
20 3bos_A Putative DNA replicatio 99.2 5.2E-11 1.8E-15 101.9 8.9 179 22-230 22-218 (242)
21 3te6_A Regulatory protein SIR3 99.2 7.9E-11 2.7E-15 104.2 9.6 166 28-199 20-213 (318)
22 1sxj_D Activator 1 41 kDa subu 99.1 8.1E-10 2.8E-14 100.3 15.6 197 23-229 32-235 (353)
23 1jbk_A CLPB protein; beta barr 99.1 2.1E-10 7.2E-15 94.4 8.7 52 24-77 18-69 (195)
24 3h4m_A Proteasome-activating n 99.1 1.4E-09 4.9E-14 95.6 14.3 187 22-230 11-232 (285)
25 3d8b_A Fidgetin-like protein 1 99.1 6.1E-09 2.1E-13 94.6 18.0 187 23-231 79-297 (357)
26 3uk6_A RUVB-like 2; hexameric 99.1 2.2E-09 7.4E-14 98.0 14.6 200 27-231 43-305 (368)
27 1sxj_A Activator 1 95 kDa subu 99.1 3.8E-09 1.3E-13 100.8 16.6 191 24-227 35-250 (516)
28 3pvs_A Replication-associated 99.0 3.4E-09 1.2E-13 98.8 13.5 179 24-228 22-214 (447)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.0 2E-08 6.8E-13 87.0 17.5 185 26-230 4-223 (262)
30 1sxj_E Activator 1 40 kDa subu 99.0 7.5E-09 2.6E-13 93.9 14.3 200 24-230 10-238 (354)
31 3eie_A Vacuolar protein sortin 99.0 2.5E-08 8.7E-13 89.2 17.4 185 23-231 13-230 (322)
32 1d2n_A N-ethylmaleimide-sensit 99.0 2.9E-08 9.8E-13 86.6 16.7 170 27-221 32-229 (272)
33 3syl_A Protein CBBX; photosynt 98.9 7.1E-09 2.4E-13 92.2 12.3 166 29-218 32-236 (309)
34 2z4s_A Chromosomal replication 98.9 9E-09 3.1E-13 96.0 13.4 184 28-230 105-307 (440)
35 3vfd_A Spastin; ATPase, microt 98.9 5.6E-08 1.9E-12 89.4 17.9 187 23-231 110-328 (389)
36 3b9p_A CG5977-PA, isoform A; A 98.9 8.7E-08 3E-12 84.6 18.5 198 9-230 3-234 (297)
37 1xwi_A SKD1 protein; VPS4B, AA 98.9 1.4E-07 4.9E-12 84.2 19.8 187 23-231 7-225 (322)
38 3u61_B DNA polymerase accessor 98.9 2.1E-08 7.1E-13 89.9 14.0 180 24-227 22-214 (324)
39 1l8q_A Chromosomal replication 98.9 1.9E-08 6.5E-13 90.1 13.6 184 23-227 6-206 (324)
40 2qp9_X Vacuolar protein sortin 98.9 1.1E-07 3.9E-12 86.1 18.0 185 23-231 46-263 (355)
41 1in4_A RUVB, holliday junction 98.8 2.4E-07 8.1E-12 83.3 18.7 263 24-327 21-321 (334)
42 1a5t_A Delta prime, HOLB; zinc 98.8 1.7E-07 5.8E-12 84.3 17.1 179 34-230 8-206 (334)
43 1sxj_C Activator 1 40 kDa subu 98.8 9.6E-08 3.3E-12 86.1 15.6 185 24-227 21-210 (340)
44 2zan_A Vacuolar protein sortin 98.8 2.2E-07 7.4E-12 86.8 17.2 188 23-231 129-347 (444)
45 4b4t_J 26S protease regulatory 98.8 3.7E-07 1.3E-11 82.9 17.4 175 28-224 148-356 (405)
46 3pxg_A Negative regulator of g 98.7 1.7E-07 5.8E-12 88.2 14.7 171 24-219 176-362 (468)
47 3n70_A Transport activator; si 98.7 3.3E-08 1.1E-12 77.6 7.3 48 29-76 2-49 (145)
48 2p65_A Hypothetical protein PF 98.7 3.2E-08 1.1E-12 80.8 7.3 50 26-77 20-69 (187)
49 1qvr_A CLPB protein; coiled co 98.7 8.2E-08 2.8E-12 97.1 11.5 178 25-220 167-370 (854)
50 3hu3_A Transitional endoplasmi 98.7 2.1E-07 7.1E-12 87.7 13.3 181 28-230 204-416 (489)
51 1ofh_A ATP-dependent HSL prote 98.7 1.3E-07 4.5E-12 83.9 10.8 49 28-76 15-75 (310)
52 4b4t_L 26S protease subunit RP 98.6 9.8E-07 3.3E-11 81.3 16.5 175 27-224 180-389 (437)
53 1lv7_A FTSH; alpha/beta domain 98.6 5.2E-07 1.8E-11 77.9 13.9 184 23-229 7-225 (257)
54 3cf0_A Transitional endoplasmi 98.6 7.6E-07 2.6E-11 78.8 15.1 179 23-224 10-223 (301)
55 4b4t_H 26S protease regulatory 98.6 3.7E-06 1.3E-10 77.4 19.1 176 27-224 208-417 (467)
56 4fcw_A Chaperone protein CLPB; 98.6 4.3E-07 1.5E-11 80.6 12.7 51 28-78 17-74 (311)
57 1ojl_A Transcriptional regulat 98.6 1.8E-06 6E-11 76.4 15.4 49 28-76 2-50 (304)
58 4b4t_K 26S protease regulatory 98.6 1.7E-06 5.8E-11 79.6 15.4 176 27-224 171-381 (428)
59 4b4t_M 26S protease regulatory 98.5 1.3E-06 4.6E-11 80.3 14.5 183 23-228 176-394 (434)
60 2bjv_A PSP operon transcriptio 98.5 8.6E-07 2.9E-11 76.9 11.9 50 28-77 6-55 (265)
61 1r6b_X CLPA protein; AAA+, N-t 98.5 1.3E-06 4.5E-11 87.3 14.7 151 26-197 184-362 (758)
62 3pxi_A Negative regulator of g 98.5 1.6E-06 5.3E-11 86.7 15.0 171 24-219 176-362 (758)
63 2r62_A Cell division protease 98.5 2.1E-07 7.3E-12 80.8 7.4 179 23-223 6-219 (268)
64 2ce7_A Cell division protein F 98.5 5.3E-06 1.8E-10 77.6 17.1 174 27-223 15-222 (476)
65 4b4t_I 26S protease regulatory 98.5 3.7E-06 1.3E-10 76.6 15.4 176 26-224 180-390 (437)
66 2gno_A DNA polymerase III, gam 98.5 1.6E-06 5.5E-11 76.6 12.1 146 32-197 1-152 (305)
67 3ec2_A DNA replication protein 98.4 5.3E-07 1.8E-11 73.3 7.3 44 33-76 19-63 (180)
68 3pxi_A Negative regulator of g 98.4 9.7E-07 3.3E-11 88.2 10.4 148 28-197 491-675 (758)
69 3cf2_A TER ATPase, transitiona 98.3 4.3E-06 1.5E-10 82.7 13.2 174 29-224 205-409 (806)
70 2c9o_A RUVB-like 1; hexameric 98.3 1.9E-05 6.6E-10 73.9 16.0 98 131-230 297-411 (456)
71 3co5_A Putative two-component 98.3 2.4E-07 8.3E-12 72.3 2.4 49 28-76 4-52 (143)
72 1iy2_A ATP-dependent metallopr 98.2 1.3E-05 4.5E-10 69.8 12.5 177 23-222 35-245 (278)
73 2dhr_A FTSH; AAA+ protein, hex 98.2 1.4E-05 4.7E-10 75.2 12.7 178 23-222 26-236 (499)
74 1ixz_A ATP-dependent metallopr 98.2 1.2E-05 4.2E-10 69.0 11.5 177 23-222 11-221 (254)
75 2kjq_A DNAA-related protein; s 98.1 2.6E-06 8.7E-11 66.9 5.5 28 50-77 35-62 (149)
76 3t15_A Ribulose bisphosphate c 98.1 4.4E-05 1.5E-09 67.0 13.5 28 50-77 35-62 (293)
77 3m6a_A ATP-dependent protease 98.1 0.00015 5E-09 69.4 17.4 176 30-219 83-296 (543)
78 2w58_A DNAI, primosome compone 98.1 1.5E-05 5E-10 65.9 9.2 61 26-86 23-89 (202)
79 1um8_A ATP-dependent CLP prote 98.1 4.3E-05 1.5E-09 69.7 13.1 49 28-76 21-97 (376)
80 2x8a_A Nuclear valosin-contain 98.1 0.00015 5.1E-09 62.9 15.6 125 54-197 47-191 (274)
81 1ypw_A Transitional endoplasmi 98.0 3E-05 1E-09 77.6 12.4 173 28-223 204-408 (806)
82 1qvr_A CLPB protein; coiled co 97.9 5.6E-05 1.9E-09 76.4 11.5 50 29-78 559-615 (854)
83 1r6b_X CLPA protein; AAA+, N-t 97.8 7.3E-05 2.5E-09 74.7 10.6 48 28-75 458-512 (758)
84 2qgz_A Helicase loader, putati 97.7 0.00011 3.7E-09 65.0 8.0 51 35-85 135-187 (308)
85 1jr3_D DNA polymerase III, del 97.5 0.0019 6.6E-08 57.8 14.5 156 49-227 16-183 (343)
86 2r44_A Uncharacterized protein 97.5 0.00014 4.9E-09 64.9 6.8 47 28-78 27-73 (331)
87 3cf2_A TER ATPase, transitiona 97.5 0.00022 7.5E-09 70.6 8.2 174 28-224 477-685 (806)
88 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 0.00011 3.9E-09 69.1 5.0 59 5-76 8-66 (500)
89 1g5t_A COB(I)alamin adenosyltr 97.4 0.00026 8.8E-09 57.6 6.4 115 51-167 28-163 (196)
90 1ex7_A Guanylate kinase; subst 97.3 0.00011 3.7E-09 59.7 3.3 35 52-86 2-36 (186)
91 3hws_A ATP-dependent CLP prote 97.3 0.00017 5.9E-09 65.3 5.0 47 30-76 17-76 (363)
92 1u0j_A DNA replication protein 97.3 0.0014 4.7E-08 56.0 10.0 36 40-75 93-128 (267)
93 2orw_A Thymidine kinase; TMTK, 97.3 0.00013 4.4E-09 59.3 3.3 26 52-77 4-29 (184)
94 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.0007 2.4E-08 59.4 7.6 24 51-74 123-146 (331)
95 1rz3_A Hypothetical protein rb 97.2 0.00039 1.3E-08 57.3 5.7 45 33-77 3-48 (201)
96 3jvv_A Twitching mobility prot 97.2 0.00016 5.6E-09 65.0 3.3 110 50-168 122-232 (356)
97 3hr8_A Protein RECA; alpha and 97.2 0.00069 2.4E-08 60.8 7.0 50 37-86 46-96 (356)
98 2cvh_A DNA repair and recombin 97.2 0.0018 6E-08 53.8 9.1 35 39-73 8-42 (220)
99 3e70_C DPA, signal recognition 97.1 0.0008 2.7E-08 59.8 7.1 30 49-78 127-156 (328)
100 1g8p_A Magnesium-chelatase 38 97.1 0.00016 5.5E-09 65.0 2.5 52 23-76 19-70 (350)
101 3c8u_A Fructokinase; YP_612366 97.1 0.00043 1.5E-08 57.3 4.7 41 36-76 7-47 (208)
102 1qhx_A CPT, protein (chloramph 97.1 0.0003 1E-08 56.6 3.5 25 52-76 4-28 (178)
103 3umf_A Adenylate kinase; rossm 97.1 0.0014 4.7E-08 54.5 7.4 27 49-75 27-53 (217)
104 3dzd_A Transcriptional regulat 97.0 0.021 7.2E-07 51.6 15.3 50 27-76 128-177 (368)
105 3io5_A Recombination and repai 97.0 0.0016 5.5E-08 56.9 7.4 34 53-86 30-65 (333)
106 1tue_A Replication protein E1; 97.0 0.00069 2.3E-08 55.4 4.5 41 35-76 43-83 (212)
107 3sr0_A Adenylate kinase; phosp 96.9 0.00081 2.8E-08 55.5 4.8 23 53-75 2-24 (206)
108 1kgd_A CASK, peripheral plasma 96.9 0.00062 2.1E-08 55.0 4.0 26 51-76 5-30 (180)
109 1odf_A YGR205W, hypothetical 3 96.9 0.00099 3.4E-08 58.1 5.6 30 48-77 28-57 (290)
110 3kb2_A SPBC2 prophage-derived 96.9 0.00054 1.8E-08 54.6 3.5 24 53-76 3-26 (173)
111 3a00_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 55.7 3.3 33 52-84 2-34 (186)
112 3tau_A Guanylate kinase, GMP k 96.9 0.0007 2.4E-08 56.0 4.1 29 49-77 6-34 (208)
113 3tlx_A Adenylate kinase 2; str 96.9 0.00088 3E-08 56.9 4.5 41 35-75 13-53 (243)
114 3ney_A 55 kDa erythrocyte memb 96.9 0.0008 2.7E-08 55.0 4.0 30 50-79 18-47 (197)
115 3uie_A Adenylyl-sulfate kinase 96.8 0.0012 4.1E-08 54.2 5.0 28 49-76 23-50 (200)
116 1gvn_B Zeta; postsegregational 96.8 0.0019 6.5E-08 56.3 6.5 27 50-76 32-58 (287)
117 2rhm_A Putative kinase; P-loop 96.8 0.00093 3.2E-08 54.3 4.1 26 50-75 4-29 (193)
118 3trf_A Shikimate kinase, SK; a 96.8 0.00075 2.6E-08 54.5 3.5 26 51-76 5-30 (185)
119 3vaa_A Shikimate kinase, SK; s 96.8 0.00086 2.9E-08 55.0 3.7 26 51-76 25-50 (199)
120 1ly1_A Polynucleotide kinase; 96.8 0.00087 3E-08 53.8 3.7 22 52-73 3-24 (181)
121 1j8m_F SRP54, signal recogniti 96.8 0.0023 7.8E-08 56.0 6.6 35 51-85 98-132 (297)
122 3bh0_A DNAB-like replicative h 96.8 0.0031 1E-07 55.8 7.5 74 6-86 30-103 (315)
123 3kl4_A SRP54, signal recogniti 96.8 0.0028 9.7E-08 58.3 7.4 29 50-78 96-124 (433)
124 1nks_A Adenylate kinase; therm 96.8 0.0013 4.6E-08 53.3 4.8 26 52-77 2-27 (194)
125 2xxa_A Signal recognition part 96.7 0.0061 2.1E-07 56.3 9.5 29 50-78 99-127 (433)
126 1knq_A Gluconate kinase; ALFA/ 96.7 0.0014 4.6E-08 52.5 4.4 26 50-75 7-32 (175)
127 3lw7_A Adenylate kinase relate 96.7 0.00088 3E-08 53.4 3.2 22 52-74 2-23 (179)
128 2r2a_A Uncharacterized protein 96.7 0.0051 1.7E-07 50.4 7.8 23 52-74 6-28 (199)
129 1kht_A Adenylate kinase; phosp 96.7 0.0011 3.6E-08 53.8 3.4 26 52-77 4-29 (192)
130 1kag_A SKI, shikimate kinase I 96.7 0.00086 2.9E-08 53.5 2.8 25 52-76 5-29 (173)
131 1zu4_A FTSY; GTPase, signal re 96.6 0.0028 9.5E-08 56.1 6.3 29 50-78 104-132 (320)
132 1zp6_A Hypothetical protein AT 96.6 0.0011 3.9E-08 53.7 3.5 25 50-74 8-32 (191)
133 2ze6_A Isopentenyl transferase 96.6 0.0013 4.3E-08 56.3 3.9 25 52-76 2-26 (253)
134 1g41_A Heat shock protein HSLU 96.6 0.0014 4.7E-08 60.5 4.3 51 28-78 15-77 (444)
135 3dm5_A SRP54, signal recogniti 96.6 0.0095 3.2E-07 54.8 9.9 29 50-78 99-127 (443)
136 2qor_A Guanylate kinase; phosp 96.6 0.001 3.5E-08 54.8 3.0 27 50-76 11-37 (204)
137 2yvu_A Probable adenylyl-sulfa 96.6 0.0025 8.5E-08 51.5 5.2 29 50-78 12-40 (186)
138 3iij_A Coilin-interacting nucl 96.6 0.0011 3.6E-08 53.4 3.0 25 51-75 11-35 (180)
139 3t61_A Gluconokinase; PSI-biol 96.6 0.0011 3.7E-08 54.5 3.0 25 51-75 18-42 (202)
140 1tev_A UMP-CMP kinase; ploop, 96.6 0.0016 5.3E-08 53.0 3.9 25 51-75 3-27 (196)
141 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0024 8.3E-08 59.0 5.5 25 53-77 153-177 (473)
142 4eun_A Thermoresistant glucoki 96.5 0.0014 4.9E-08 53.7 3.6 26 50-75 28-53 (200)
143 3cm0_A Adenylate kinase; ATP-b 96.5 0.0018 6.2E-08 52.2 4.1 25 51-75 4-28 (186)
144 2dr3_A UPF0273 protein PH0284; 96.5 0.0019 6.4E-08 54.7 4.3 37 50-86 22-58 (247)
145 1vma_A Cell division protein F 96.5 0.0074 2.5E-07 53.0 8.1 29 50-78 103-131 (306)
146 3tr0_A Guanylate kinase, GMP k 96.5 0.0015 5.1E-08 53.6 3.5 25 51-75 7-31 (205)
147 2plr_A DTMP kinase, probable t 96.5 0.0019 6.4E-08 53.3 4.0 28 51-78 4-31 (213)
148 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.4E-08 53.0 3.5 26 50-75 8-33 (196)
149 1ukz_A Uridylate kinase; trans 96.5 0.002 6.8E-08 52.9 4.1 27 49-75 13-39 (203)
150 1zuh_A Shikimate kinase; alpha 96.5 0.0018 6.1E-08 51.4 3.6 27 50-76 6-32 (168)
151 1lvg_A Guanylate kinase, GMP k 96.5 0.0016 5.3E-08 53.5 3.4 26 51-76 4-29 (198)
152 2cdn_A Adenylate kinase; phosp 96.5 0.002 6.9E-08 52.8 4.0 27 50-76 19-45 (201)
153 3tqc_A Pantothenate kinase; bi 96.5 0.0025 8.4E-08 56.3 4.8 47 30-76 69-117 (321)
154 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0016 5.3E-08 54.6 3.4 36 51-86 23-58 (235)
155 1xjc_A MOBB protein homolog; s 96.5 0.0023 8E-08 50.8 4.1 28 51-78 4-31 (169)
156 1qf9_A UMP/CMP kinase, protein 96.5 0.0022 7.6E-08 51.9 4.2 27 50-76 5-31 (194)
157 2px0_A Flagellar biosynthesis 96.5 0.0083 2.9E-07 52.4 8.0 28 50-77 104-131 (296)
158 3asz_A Uridine kinase; cytidin 96.5 0.002 6.9E-08 53.2 3.9 28 49-76 4-31 (211)
159 3b9q_A Chloroplast SRP recepto 96.5 0.0045 1.5E-07 54.3 6.3 29 50-78 99-127 (302)
160 2og2_A Putative signal recogni 96.4 0.0053 1.8E-07 55.1 6.8 29 50-78 156-184 (359)
161 1uj2_A Uridine-cytidine kinase 96.4 0.002 6.9E-08 55.0 3.9 28 49-76 20-47 (252)
162 4a1f_A DNAB helicase, replicat 96.4 0.0043 1.5E-07 55.2 6.1 54 32-86 28-81 (338)
163 1y63_A LMAJ004144AAA protein; 96.4 0.0019 6.6E-08 52.2 3.6 25 50-74 9-33 (184)
164 2bwj_A Adenylate kinase 5; pho 96.4 0.0017 5.7E-08 53.0 3.2 26 51-76 12-37 (199)
165 1via_A Shikimate kinase; struc 96.4 0.0018 6.1E-08 51.8 3.4 24 53-76 6-29 (175)
166 2iyv_A Shikimate kinase, SK; t 96.4 0.0013 4.6E-08 53.0 2.6 24 53-76 4-27 (184)
167 2jaq_A Deoxyguanosine kinase; 96.4 0.002 6.7E-08 52.8 3.6 24 53-76 2-25 (205)
168 3exa_A TRNA delta(2)-isopenten 96.4 0.002 6.8E-08 56.3 3.7 26 51-76 3-28 (322)
169 1nn5_A Similar to deoxythymidy 96.4 0.0024 8.3E-08 52.8 4.2 28 51-78 9-36 (215)
170 3ice_A Transcription terminati 96.4 0.0013 4.5E-08 59.0 2.6 26 51-76 174-199 (422)
171 3k1j_A LON protease, ATP-depen 96.4 0.0013 4.5E-08 63.7 2.8 48 27-78 40-87 (604)
172 2vli_A Antibiotic resistance p 96.4 0.0014 4.6E-08 52.8 2.4 26 51-76 5-30 (183)
173 3foz_A TRNA delta(2)-isopenten 96.4 0.0025 8.6E-08 55.6 4.2 28 49-76 8-35 (316)
174 1e6c_A Shikimate kinase; phosp 96.4 0.0017 5.7E-08 51.8 2.9 24 53-76 4-27 (173)
175 2wwf_A Thymidilate kinase, put 96.4 0.0021 7.2E-08 53.0 3.6 28 50-77 9-36 (212)
176 2bbw_A Adenylate kinase 4, AK4 96.4 0.0021 7.1E-08 54.6 3.6 27 50-76 26-52 (246)
177 3p32_A Probable GTPase RV1496/ 96.4 0.0056 1.9E-07 55.1 6.6 42 37-78 65-106 (355)
178 3a8t_A Adenylate isopentenyltr 96.4 0.002 7E-08 56.9 3.5 27 50-76 39-65 (339)
179 1ye8_A Protein THEP1, hypothet 96.4 0.0023 8E-08 51.4 3.6 24 53-76 2-25 (178)
180 2zr9_A Protein RECA, recombina 96.4 0.0024 8.4E-08 57.2 4.1 51 36-86 45-96 (349)
181 1u94_A RECA protein, recombina 96.3 0.0026 9E-08 57.1 4.3 50 37-86 48-98 (356)
182 2j41_A Guanylate kinase; GMP, 96.3 0.0021 7.2E-08 52.8 3.4 25 51-75 6-30 (207)
183 1s96_A Guanylate kinase, GMP k 96.3 0.0025 8.5E-08 53.1 3.9 27 50-76 15-41 (219)
184 1rj9_A FTSY, signal recognitio 96.3 0.0032 1.1E-07 55.3 4.7 29 50-78 101-129 (304)
185 1cke_A CK, MSSA, protein (cyti 96.3 0.0022 7.7E-08 53.5 3.6 24 52-75 6-29 (227)
186 1n0w_A DNA repair protein RAD5 96.3 0.0031 1.1E-07 53.2 4.5 38 38-75 11-48 (243)
187 1aky_A Adenylate kinase; ATP:A 96.3 0.0022 7.7E-08 53.4 3.6 26 51-76 4-29 (220)
188 2ck3_D ATP synthase subunit be 96.3 0.01 3.5E-07 54.8 8.1 54 51-108 153-207 (482)
189 4a74_A DNA repair and recombin 96.3 0.0023 7.8E-08 53.5 3.6 37 39-75 13-49 (231)
190 2bdt_A BH3686; alpha-beta prot 96.3 0.0025 8.7E-08 51.6 3.7 23 52-74 3-25 (189)
191 2pez_A Bifunctional 3'-phospho 96.3 0.003 1E-07 50.7 4.0 27 50-76 4-30 (179)
192 1uf9_A TT1252 protein; P-loop, 96.3 0.0026 8.9E-08 52.0 3.7 26 49-74 6-31 (203)
193 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0029 9.8E-08 54.3 4.0 26 51-76 4-29 (260)
194 2z0h_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 51.8 3.6 25 53-77 2-26 (197)
195 4gp7_A Metallophosphoesterase; 96.3 0.0022 7.7E-08 51.1 3.1 22 50-71 8-29 (171)
196 3upu_A ATP-dependent DNA helic 96.3 0.0049 1.7E-07 57.6 5.8 28 52-79 46-73 (459)
197 3fb4_A Adenylate kinase; psych 96.3 0.0026 8.9E-08 52.7 3.6 23 53-75 2-24 (216)
198 2pt5_A Shikimate kinase, SK; a 96.3 0.0028 9.5E-08 50.2 3.6 24 53-76 2-25 (168)
199 2pbr_A DTMP kinase, thymidylat 96.2 0.0027 9.4E-08 51.5 3.6 24 53-76 2-25 (195)
200 1zd8_A GTP:AMP phosphotransfer 96.2 0.0025 8.5E-08 53.4 3.2 25 51-75 7-31 (227)
201 3dl0_A Adenylate kinase; phosp 96.2 0.0028 9.6E-08 52.6 3.5 23 53-75 2-24 (216)
202 2r6a_A DNAB helicase, replicat 96.2 0.0094 3.2E-07 55.5 7.3 37 50-86 202-239 (454)
203 2qt1_A Nicotinamide riboside k 96.2 0.003 1E-07 52.0 3.5 27 49-75 19-45 (207)
204 2v54_A DTMP kinase, thymidylat 96.2 0.0029 9.8E-08 51.9 3.4 25 51-75 4-28 (204)
205 3crm_A TRNA delta(2)-isopenten 96.2 0.0035 1.2E-07 55.3 4.0 26 51-76 5-30 (323)
206 1zak_A Adenylate kinase; ATP:A 96.2 0.0024 8.1E-08 53.3 2.9 26 51-76 5-30 (222)
207 3bgw_A DNAB-like replicative h 96.2 0.0089 3E-07 55.4 7.0 49 37-86 184-232 (444)
208 2hf9_A Probable hydrogenase ni 96.2 0.0037 1.3E-07 52.1 4.0 41 35-77 24-64 (226)
209 1v5w_A DMC1, meiotic recombina 96.2 0.0072 2.4E-07 54.1 6.1 49 38-86 109-163 (343)
210 2p5t_B PEZT; postsegregational 96.2 0.0029 1E-07 54.0 3.4 27 50-76 31-57 (253)
211 2qmh_A HPR kinase/phosphorylas 96.2 0.0027 9.3E-08 51.5 3.0 25 51-75 34-58 (205)
212 1fx0_B ATP synthase beta chain 96.1 0.0094 3.2E-07 55.3 6.8 54 51-108 165-219 (498)
213 1xp8_A RECA protein, recombina 96.1 0.011 3.6E-07 53.3 7.0 51 36-86 58-109 (366)
214 2jeo_A Uridine-cytidine kinase 96.1 0.004 1.4E-07 52.8 4.1 26 50-75 24-49 (245)
215 4e22_A Cytidylate kinase; P-lo 96.1 0.0035 1.2E-07 53.5 3.6 27 50-76 26-52 (252)
216 1z6g_A Guanylate kinase; struc 96.1 0.0026 8.9E-08 53.0 2.7 26 50-75 22-47 (218)
217 1znw_A Guanylate kinase, GMP k 96.1 0.0031 1.1E-07 52.0 3.2 27 50-76 19-45 (207)
218 2r8r_A Sensor protein; KDPD, P 96.1 0.0068 2.3E-07 50.4 5.1 28 51-78 6-33 (228)
219 3d3q_A TRNA delta(2)-isopenten 96.1 0.0037 1.3E-07 55.4 3.8 25 52-76 8-32 (340)
220 1m7g_A Adenylylsulfate kinase; 96.1 0.0045 1.5E-07 51.1 4.1 27 50-76 24-50 (211)
221 2if2_A Dephospho-COA kinase; a 96.1 0.0033 1.1E-07 51.6 3.2 21 53-73 3-23 (204)
222 2j9r_A Thymidine kinase; TK1, 96.1 0.01 3.6E-07 48.8 6.1 108 50-167 27-138 (214)
223 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0045 1.5E-07 55.1 4.2 30 49-78 22-51 (359)
224 3be4_A Adenylate kinase; malar 96.1 0.003 1E-07 52.5 3.0 24 52-75 6-29 (217)
225 1htw_A HI0065; nucleotide-bind 96.1 0.0044 1.5E-07 48.7 3.7 27 49-75 31-57 (158)
226 2z43_A DNA repair and recombin 96.0 0.0047 1.6E-07 54.8 4.3 49 38-86 94-148 (324)
227 1jjv_A Dephospho-COA kinase; P 96.0 0.0037 1.3E-07 51.4 3.4 22 52-73 3-24 (206)
228 1gtv_A TMK, thymidylate kinase 96.0 0.002 6.7E-08 53.3 1.6 25 53-77 2-26 (214)
229 2eyu_A Twitching motility prot 96.0 0.0055 1.9E-07 52.5 4.4 28 49-76 23-50 (261)
230 2wsm_A Hydrogenase expression/ 96.0 0.0055 1.9E-07 50.8 4.3 41 36-78 17-57 (221)
231 3aez_A Pantothenate kinase; tr 96.0 0.005 1.7E-07 54.2 4.2 28 49-76 88-115 (312)
232 2grj_A Dephospho-COA kinase; T 96.0 0.0054 1.9E-07 49.9 4.0 27 49-75 10-36 (192)
233 1np6_A Molybdopterin-guanine d 96.0 0.0066 2.2E-07 48.5 4.4 28 50-77 5-32 (174)
234 2q6t_A DNAB replication FORK h 96.0 0.031 1E-06 51.9 9.6 49 37-86 187-236 (444)
235 3cmu_A Protein RECA, recombina 96.0 0.01 3.6E-07 64.1 7.0 37 50-86 1426-1462(2050)
236 2b8t_A Thymidine kinase; deoxy 95.9 0.0075 2.6E-07 50.3 4.8 37 49-85 10-46 (223)
237 1a7j_A Phosphoribulokinase; tr 95.9 0.0022 7.6E-08 56.0 1.6 27 50-76 4-30 (290)
238 3fwy_A Light-independent proto 95.9 0.0069 2.4E-07 53.4 4.8 38 49-86 46-83 (314)
239 3r20_A Cytidylate kinase; stru 95.9 0.0049 1.7E-07 51.7 3.6 26 51-76 9-34 (233)
240 2fz4_A DNA repair protein RAD2 95.9 0.12 4.2E-06 43.3 12.4 41 30-75 92-132 (237)
241 1g8f_A Sulfate adenylyltransfe 95.9 0.0049 1.7E-07 57.9 3.9 49 29-77 373-421 (511)
242 3cr8_A Sulfate adenylyltranfer 95.9 0.0081 2.8E-07 57.1 5.5 49 30-78 348-396 (552)
243 2ehv_A Hypothetical protein PH 95.9 0.0055 1.9E-07 51.8 3.9 25 50-74 29-53 (251)
244 2xb4_A Adenylate kinase; ATP-b 95.9 0.0052 1.8E-07 51.3 3.6 23 53-75 2-24 (223)
245 4akg_A Glutathione S-transfera 95.9 0.038 1.3E-06 61.8 11.1 25 51-75 1267-1291(2695)
246 3hjn_A DTMP kinase, thymidylat 95.9 0.031 1E-06 45.6 8.1 33 53-85 2-34 (197)
247 3ake_A Cytidylate kinase; CMP 95.9 0.0054 1.8E-07 50.3 3.6 24 53-76 4-27 (208)
248 2j37_W Signal recognition part 95.9 0.014 4.9E-07 54.7 6.8 29 50-78 100-128 (504)
249 1sq5_A Pantothenate kinase; P- 95.8 0.0093 3.2E-07 52.5 5.3 28 49-76 78-105 (308)
250 4gzl_A RAS-related C3 botulinu 95.8 0.0053 1.8E-07 50.3 3.5 50 23-74 4-53 (204)
251 1ak2_A Adenylate kinase isoenz 95.8 0.0058 2E-07 51.4 3.7 26 51-76 16-41 (233)
252 1vht_A Dephospho-COA kinase; s 95.8 0.0063 2.2E-07 50.5 3.9 23 51-73 4-26 (218)
253 3eph_A TRNA isopentenyltransfe 95.8 0.0055 1.9E-07 55.5 3.7 26 51-76 2-27 (409)
254 1e4v_A Adenylate kinase; trans 95.8 0.0053 1.8E-07 50.8 3.4 23 53-75 2-24 (214)
255 3lnc_A Guanylate kinase, GMP k 95.8 0.0032 1.1E-07 52.9 2.0 25 51-75 27-52 (231)
256 2f1r_A Molybdopterin-guanine d 95.8 0.004 1.4E-07 49.6 2.4 26 52-77 3-28 (171)
257 1cr0_A DNA primase/helicase; R 95.8 0.0072 2.5E-07 52.8 4.2 29 50-78 34-62 (296)
258 2zts_A Putative uncharacterize 95.7 0.0036 1.2E-07 53.0 2.2 26 50-75 29-54 (251)
259 1pzn_A RAD51, DNA repair and r 95.7 0.011 3.6E-07 53.1 5.2 37 39-75 119-155 (349)
260 2f6r_A COA synthase, bifunctio 95.7 0.0069 2.4E-07 52.5 3.7 24 50-73 74-97 (281)
261 1nlf_A Regulatory protein REPA 95.7 0.0092 3.2E-07 51.6 4.5 28 50-77 29-56 (279)
262 3nwj_A ATSK2; P loop, shikimat 95.7 0.0048 1.7E-07 52.5 2.6 26 51-76 48-73 (250)
263 4eaq_A DTMP kinase, thymidylat 95.7 0.0088 3E-07 50.2 4.2 28 50-77 25-52 (229)
264 2i3b_A HCR-ntpase, human cance 95.6 0.0063 2.2E-07 49.4 3.1 24 53-76 3-26 (189)
265 2yhs_A FTSY, cell division pro 95.6 0.01 3.4E-07 55.3 4.7 35 50-85 292-326 (503)
266 1ltq_A Polynucleotide kinase; 95.6 0.0076 2.6E-07 52.7 3.8 23 52-74 3-25 (301)
267 1p9r_A General secretion pathw 95.6 0.018 6E-07 52.9 6.2 30 49-78 165-194 (418)
268 2i1q_A DNA repair and recombin 95.6 0.011 3.6E-07 52.4 4.6 39 37-75 84-122 (322)
269 2ffh_A Protein (FFH); SRP54, s 95.6 0.025 8.4E-07 51.9 7.1 29 50-78 97-125 (425)
270 3tif_A Uncharacterized ABC tra 95.6 0.0058 2E-07 51.5 2.7 25 50-74 30-54 (235)
271 3zvl_A Bifunctional polynucleo 95.6 0.0069 2.3E-07 55.7 3.4 27 49-75 256-282 (416)
272 2v3c_C SRP54, signal recogniti 95.6 0.0086 2.9E-07 55.2 4.0 28 51-78 99-126 (432)
273 4edh_A DTMP kinase, thymidylat 95.5 0.029 9.9E-07 46.4 6.8 28 51-78 6-33 (213)
274 1yrb_A ATP(GTP)binding protein 95.5 0.014 4.7E-07 49.8 5.0 27 50-76 13-39 (262)
275 3tqf_A HPR(Ser) kinase; transf 95.5 0.0089 3E-07 47.3 3.3 24 51-74 16-39 (181)
276 2onk_A Molybdate/tungstate ABC 95.5 0.0077 2.6E-07 50.9 3.2 24 52-75 25-48 (240)
277 1svm_A Large T antigen; AAA+ f 95.5 0.011 3.9E-07 53.3 4.4 27 49-75 167-193 (377)
278 2gks_A Bifunctional SAT/APS ki 95.5 0.019 6.6E-07 54.6 6.2 50 28-77 349-398 (546)
279 3l0o_A Transcription terminati 95.4 0.0023 7.9E-08 57.4 -0.2 36 40-76 165-200 (427)
280 2ocp_A DGK, deoxyguanosine kin 95.4 0.0098 3.3E-07 50.2 3.7 26 51-76 2-27 (241)
281 2cbz_A Multidrug resistance-as 95.4 0.007 2.4E-07 51.1 2.7 26 50-75 30-55 (237)
282 2ged_A SR-beta, signal recogni 95.4 0.0099 3.4E-07 48.0 3.5 25 50-74 47-71 (193)
283 4hlc_A DTMP kinase, thymidylat 95.4 0.015 5.3E-07 47.7 4.6 28 52-79 3-30 (205)
284 2v9p_A Replication protein E1; 95.4 0.009 3.1E-07 52.3 3.3 27 49-75 124-150 (305)
285 1mv5_A LMRA, multidrug resista 95.4 0.0089 3E-07 50.6 3.2 25 50-74 27-51 (243)
286 3end_A Light-independent proto 95.4 0.015 5.2E-07 51.0 4.8 38 49-86 39-76 (307)
287 2pcj_A ABC transporter, lipopr 95.3 0.0073 2.5E-07 50.5 2.6 24 51-74 30-53 (224)
288 1ls1_A Signal recognition part 95.3 0.016 5.6E-07 50.5 4.9 29 50-78 97-125 (295)
289 3vr4_D V-type sodium ATPase su 95.3 0.021 7.1E-07 52.5 5.6 51 53-107 153-207 (465)
290 1b0u_A Histidine permease; ABC 95.3 0.0078 2.7E-07 51.6 2.7 26 50-75 31-56 (262)
291 2wji_A Ferrous iron transport 95.3 0.012 4.1E-07 46.2 3.7 23 52-74 4-26 (165)
292 2dyk_A GTP-binding protein; GT 95.3 0.012 4.1E-07 45.7 3.7 23 52-74 2-24 (161)
293 2qe7_A ATP synthase subunit al 95.3 0.016 5.3E-07 53.9 4.8 51 51-107 162-214 (502)
294 3b85_A Phosphate starvation-in 95.3 0.0069 2.4E-07 50.0 2.3 24 51-74 22-45 (208)
295 1oix_A RAS-related protein RAB 95.3 0.01 3.5E-07 48.1 3.2 24 51-74 29-52 (191)
296 3cmw_A Protein RECA, recombina 95.3 0.019 6.3E-07 61.4 5.9 37 50-86 731-767 (1706)
297 2zej_A Dardarin, leucine-rich 95.3 0.008 2.7E-07 48.3 2.5 21 53-73 4-24 (184)
298 3lda_A DNA repair protein RAD5 95.3 0.0085 2.9E-07 54.6 2.9 38 37-74 164-201 (400)
299 2f9l_A RAB11B, member RAS onco 95.3 0.01 3.5E-07 48.3 3.1 24 51-74 5-28 (199)
300 1ypw_A Transitional endoplasmi 95.3 0.0094 3.2E-07 59.6 3.4 51 28-78 477-538 (806)
301 2zu0_C Probable ATP-dependent 95.2 0.01 3.5E-07 51.0 3.3 25 50-74 45-69 (267)
302 2qm8_A GTPase/ATPase; G protei 95.2 0.031 1.1E-06 49.8 6.4 29 49-77 53-81 (337)
303 2olj_A Amino acid ABC transpor 95.2 0.0091 3.1E-07 51.2 2.7 26 50-75 49-74 (263)
304 3f9v_A Minichromosome maintena 95.2 0.0048 1.7E-07 59.5 1.1 48 28-75 295-351 (595)
305 3gfo_A Cobalt import ATP-bindi 95.2 0.0094 3.2E-07 51.4 2.8 24 51-74 34-57 (275)
306 2d2e_A SUFC protein; ABC-ATPas 95.1 0.012 4E-07 50.1 3.2 24 51-74 29-52 (250)
307 1q3t_A Cytidylate kinase; nucl 95.1 0.013 4.6E-07 49.2 3.7 26 50-75 15-40 (236)
308 3oaa_A ATP synthase subunit al 95.1 0.026 8.9E-07 52.3 5.7 52 51-107 162-214 (513)
309 2ghi_A Transport protein; mult 95.1 0.0096 3.3E-07 51.0 2.7 26 50-75 45-70 (260)
310 1vpl_A ABC transporter, ATP-bi 95.1 0.01 3.4E-07 50.7 2.7 26 50-75 40-65 (256)
311 2p67_A LAO/AO transport system 95.1 0.031 1.1E-06 49.8 6.1 30 48-77 53-82 (341)
312 1ji0_A ABC transporter; ATP bi 95.1 0.01 3.5E-07 50.2 2.7 24 51-74 32-55 (240)
313 2ixe_A Antigen peptide transpo 95.1 0.01 3.4E-07 51.2 2.7 25 50-74 44-68 (271)
314 2r9v_A ATP synthase subunit al 95.1 0.023 7.8E-07 52.9 5.1 51 51-107 175-227 (515)
315 2ff7_A Alpha-hemolysin translo 95.1 0.01 3.6E-07 50.3 2.7 24 51-74 35-58 (247)
316 1sgw_A Putative ABC transporte 95.1 0.0088 3E-07 49.5 2.2 25 51-75 35-59 (214)
317 1g6h_A High-affinity branched- 95.1 0.01 3.6E-07 50.7 2.7 24 51-74 33-56 (257)
318 1tq4_A IIGP1, interferon-induc 95.1 0.01 3.5E-07 54.2 2.8 26 49-74 67-92 (413)
319 3v9p_A DTMP kinase, thymidylat 95.1 0.022 7.4E-07 47.6 4.6 28 51-78 25-52 (227)
320 2pze_A Cystic fibrosis transme 95.0 0.011 3.8E-07 49.5 2.8 26 51-76 34-59 (229)
321 4g1u_C Hemin import ATP-bindin 95.0 0.011 3.7E-07 50.8 2.7 24 51-74 37-60 (266)
322 2wjg_A FEOB, ferrous iron tran 95.0 0.016 5.5E-07 46.4 3.6 24 51-74 7-30 (188)
323 2ewv_A Twitching motility prot 95.0 0.017 5.9E-07 52.2 4.1 110 49-167 134-244 (372)
324 3lv8_A DTMP kinase, thymidylat 95.0 0.036 1.2E-06 46.6 5.8 28 51-78 27-54 (236)
325 4tmk_A Protein (thymidylate ki 95.0 0.041 1.4E-06 45.5 6.0 27 52-78 4-30 (213)
326 1z2a_A RAS-related protein RAB 95.0 0.019 6.5E-07 44.9 3.9 24 51-74 5-28 (168)
327 2yz2_A Putative ABC transporte 95.0 0.011 3.9E-07 50.7 2.7 25 50-74 32-56 (266)
328 3fdi_A Uncharacterized protein 95.0 0.016 5.4E-07 47.5 3.5 26 51-76 6-31 (201)
329 2ce2_X GTPase HRAS; signaling 95.0 0.014 4.6E-07 45.5 3.0 22 53-74 5-26 (166)
330 3ld9_A DTMP kinase, thymidylat 94.9 0.021 7.1E-07 47.5 4.1 29 49-77 19-47 (223)
331 2qi9_C Vitamin B12 import ATP- 94.9 0.012 4.2E-07 49.9 2.8 26 51-76 26-51 (249)
332 3mfy_A V-type ATP synthase alp 94.9 0.048 1.7E-06 51.2 6.9 49 51-105 227-275 (588)
333 1c9k_A COBU, adenosylcobinamid 94.9 0.012 4.1E-07 47.1 2.5 21 54-74 2-22 (180)
334 2lkc_A Translation initiation 94.9 0.017 5.9E-07 45.7 3.5 26 49-74 6-31 (178)
335 3fvq_A Fe(3+) IONS import ATP- 94.9 0.013 4.5E-07 52.4 3.0 24 51-74 30-53 (359)
336 2vp4_A Deoxynucleoside kinase; 94.9 0.012 4E-07 49.4 2.6 26 49-74 18-43 (230)
337 3ug7_A Arsenical pump-driving 94.9 0.037 1.3E-06 49.5 6.0 39 47-85 22-60 (349)
338 2ck3_A ATP synthase subunit al 94.9 0.022 7.5E-07 53.0 4.5 53 51-107 162-222 (510)
339 1cp2_A CP2, nitrogenase iron p 94.9 0.027 9.1E-07 48.3 4.8 35 52-86 2-36 (269)
340 4b3f_X DNA-binding protein smu 94.9 0.025 8.5E-07 55.2 5.1 38 36-77 194-231 (646)
341 2nzj_A GTP-binding protein REM 94.9 0.021 7.3E-07 44.9 3.9 24 51-74 4-27 (175)
342 3sop_A Neuronal-specific septi 94.9 0.014 4.9E-07 50.1 3.1 23 53-75 4-26 (270)
343 2ihy_A ABC transporter, ATP-bi 94.8 0.013 4.6E-07 50.6 2.9 25 51-75 47-71 (279)
344 2nq2_C Hypothetical ABC transp 94.8 0.013 4.5E-07 49.9 2.8 25 51-75 31-55 (253)
345 1kao_A RAP2A; GTP-binding prot 94.8 0.017 5.7E-07 45.1 3.2 22 53-74 5-26 (167)
346 1nrj_B SR-beta, signal recogni 94.8 0.018 6E-07 47.5 3.5 25 50-74 11-35 (218)
347 1r8s_A ADP-ribosylation factor 94.8 0.018 6E-07 44.9 3.3 21 54-74 3-23 (164)
348 2www_A Methylmalonic aciduria 94.8 0.029 1E-06 50.2 5.0 28 50-77 73-100 (349)
349 2c61_A A-type ATP synthase non 94.8 0.025 8.6E-07 52.2 4.6 52 52-107 153-208 (469)
350 3nh6_A ATP-binding cassette SU 94.8 0.012 4.2E-07 51.5 2.5 25 50-74 79-103 (306)
351 2fn4_A P23, RAS-related protei 94.8 0.025 8.5E-07 44.8 4.1 25 50-74 8-32 (181)
352 1z08_A RAS-related protein RAB 94.8 0.017 6E-07 45.2 3.2 24 51-74 6-29 (170)
353 1u8z_A RAS-related protein RAL 94.8 0.018 6E-07 45.0 3.1 23 52-74 5-27 (168)
354 3d31_A Sulfate/molybdate ABC t 94.8 0.015 5.3E-07 51.9 3.0 25 50-74 25-49 (348)
355 1p5z_B DCK, deoxycytidine kina 94.8 0.0097 3.3E-07 51.0 1.7 27 50-76 23-49 (263)
356 1m8p_A Sulfate adenylyltransfe 94.7 0.03 1E-06 53.6 5.2 27 50-76 395-421 (573)
357 1ek0_A Protein (GTP-binding pr 94.7 0.018 6.1E-07 45.1 3.1 22 53-74 5-26 (170)
358 2erx_A GTP-binding protein DI- 94.7 0.017 5.8E-07 45.3 3.0 22 53-74 5-26 (172)
359 3rlf_A Maltose/maltodextrin im 94.7 0.017 5.8E-07 52.1 3.3 25 50-74 28-52 (381)
360 1fzq_A ADP-ribosylation factor 94.7 0.028 9.5E-07 44.9 4.3 25 50-74 15-39 (181)
361 2it1_A 362AA long hypothetical 94.7 0.017 5.8E-07 51.8 3.3 25 50-74 28-52 (362)
362 2yv5_A YJEQ protein; hydrolase 94.7 0.025 8.4E-07 49.6 4.2 33 37-75 156-188 (302)
363 2yyz_A Sugar ABC transporter, 94.7 0.017 5.7E-07 51.8 3.2 25 50-74 28-52 (359)
364 1z0j_A RAB-22, RAS-related pro 94.7 0.019 6.4E-07 45.0 3.2 23 52-74 7-29 (170)
365 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.019 6.4E-07 45.4 3.2 24 51-74 7-30 (177)
366 3ihw_A Centg3; RAS, centaurin, 94.7 0.019 6.4E-07 46.1 3.2 24 51-74 20-43 (184)
367 2h92_A Cytidylate kinase; ross 94.7 0.016 5.5E-07 47.9 2.9 24 52-75 4-27 (219)
368 2axn_A 6-phosphofructo-2-kinas 94.7 0.03 1E-06 53.0 5.0 28 49-76 33-60 (520)
369 1c1y_A RAS-related protein RAP 94.7 0.019 6.5E-07 44.8 3.1 22 53-74 5-26 (167)
370 3con_A GTPase NRAS; structural 94.7 0.019 6.3E-07 46.2 3.1 23 52-74 22-44 (190)
371 3q85_A GTP-binding protein REM 94.6 0.018 6.3E-07 45.1 3.0 21 53-73 4-24 (169)
372 1v43_A Sugar-binding transport 94.6 0.018 6.2E-07 51.9 3.3 25 50-74 36-60 (372)
373 1g16_A RAS-related protein SEC 94.6 0.018 6.3E-07 45.1 3.0 23 52-74 4-26 (170)
374 1nij_A Hypothetical protein YJ 94.6 0.019 6.5E-07 50.7 3.3 26 50-75 3-28 (318)
375 1z47_A CYSA, putative ABC-tran 94.6 0.019 6.4E-07 51.4 3.2 24 51-74 41-64 (355)
376 3zq6_A Putative arsenical pump 94.6 0.026 8.8E-07 50.0 4.1 36 51-86 14-49 (324)
377 1m7b_A RND3/RHOE small GTP-bin 94.6 0.019 6.4E-07 46.0 3.0 24 51-74 7-30 (184)
378 1zj6_A ADP-ribosylation factor 94.6 0.039 1.3E-06 44.2 4.9 35 37-74 5-39 (187)
379 1ky3_A GTP-binding protein YPT 94.6 0.027 9.3E-07 44.6 3.9 25 50-74 7-31 (182)
380 2pjz_A Hypothetical protein ST 94.6 0.017 5.8E-07 49.5 2.8 25 51-75 30-54 (263)
381 3gqb_B V-type ATP synthase bet 94.6 0.022 7.4E-07 52.4 3.6 25 52-76 148-172 (464)
382 1svi_A GTP-binding protein YSX 94.6 0.02 6.7E-07 46.2 3.1 25 50-74 22-46 (195)
383 1fx0_A ATP synthase alpha chai 94.6 0.016 5.6E-07 53.8 2.8 51 51-107 163-215 (507)
384 3kta_A Chromosome segregation 94.6 0.02 6.9E-07 45.8 3.1 25 52-76 27-51 (182)
385 3c5c_A RAS-like protein 12; GD 94.5 0.021 7.2E-07 45.9 3.2 24 51-74 21-44 (187)
386 3io3_A DEHA2D07832P; chaperone 94.5 0.035 1.2E-06 49.6 4.9 39 48-86 15-55 (348)
387 2bbs_A Cystic fibrosis transme 94.5 0.016 5.3E-07 50.5 2.5 25 51-75 64-88 (290)
388 1r2q_A RAS-related protein RAB 94.5 0.021 7.3E-07 44.6 3.1 23 52-74 7-29 (170)
389 3q72_A GTP-binding protein RAD 94.5 0.018 6.1E-07 45.0 2.6 21 53-73 4-24 (166)
390 2iwr_A Centaurin gamma 1; ANK 94.5 0.017 6E-07 45.8 2.6 23 52-74 8-30 (178)
391 1oxx_K GLCV, glucose, ABC tran 94.5 0.015 5.2E-07 52.1 2.4 25 50-74 30-54 (353)
392 2cjw_A GTP-binding protein GEM 94.5 0.02 6.9E-07 46.3 3.0 23 51-73 6-28 (192)
393 2gj8_A MNME, tRNA modification 94.5 0.023 7.9E-07 45.0 3.2 23 52-74 5-27 (172)
394 1upt_A ARL1, ADP-ribosylation 94.5 0.033 1.1E-06 43.6 4.1 25 50-74 6-30 (171)
395 3iqw_A Tail-anchored protein t 94.5 0.038 1.3E-06 49.1 4.9 38 49-86 14-51 (334)
396 3tui_C Methionine import ATP-b 94.5 0.021 7.3E-07 51.1 3.3 25 50-74 53-77 (366)
397 2afh_E Nitrogenase iron protei 94.5 0.034 1.2E-06 48.2 4.5 34 52-85 3-36 (289)
398 1lw7_A Transcriptional regulat 94.5 0.027 9.2E-07 50.8 4.0 26 51-76 170-195 (365)
399 1g29_1 MALK, maltose transport 94.4 0.021 7.3E-07 51.5 3.2 24 51-74 29-52 (372)
400 3pqc_A Probable GTP-binding pr 94.4 0.021 7.3E-07 45.9 3.0 24 51-74 23-46 (195)
401 1m2o_B GTP-binding protein SAR 94.4 0.021 7.3E-07 46.0 3.0 24 51-74 23-46 (190)
402 2hxs_A RAB-26, RAS-related pro 94.4 0.038 1.3E-06 43.6 4.4 24 51-74 6-29 (178)
403 3tmk_A Thymidylate kinase; pho 94.4 0.027 9.1E-07 46.6 3.5 27 51-77 5-31 (216)
404 1z0f_A RAB14, member RAS oncog 94.4 0.023 8E-07 44.9 3.1 24 51-74 15-38 (179)
405 3e1s_A Exodeoxyribonuclease V, 94.4 0.029 1E-06 53.8 4.3 28 51-78 204-231 (574)
406 1h65_A Chloroplast outer envel 94.4 0.041 1.4E-06 47.3 4.8 26 49-74 37-62 (270)
407 4dsu_A GTPase KRAS, isoform 2B 94.4 0.024 8.3E-07 45.3 3.2 23 52-74 5-27 (189)
408 3bc1_A RAS-related protein RAB 94.4 0.024 8.2E-07 45.5 3.1 24 51-74 11-34 (195)
409 2y8e_A RAB-protein 6, GH09086P 94.4 0.023 7.8E-07 44.9 3.0 23 52-74 15-37 (179)
410 4dkx_A RAS-related protein RAB 94.4 0.024 8.1E-07 47.0 3.1 21 54-74 16-36 (216)
411 2oil_A CATX-8, RAS-related pro 94.3 0.024 8.4E-07 45.6 3.1 24 51-74 25-48 (193)
412 1q57_A DNA primase/helicase; d 94.3 0.045 1.5E-06 51.6 5.3 37 50-86 241-278 (503)
413 3kkq_A RAS-related protein M-R 94.3 0.025 8.7E-07 45.0 3.1 24 51-74 18-41 (183)
414 2cxx_A Probable GTP-binding pr 94.3 0.021 7.1E-07 45.8 2.6 22 53-74 3-24 (190)
415 2bme_A RAB4A, RAS-related prot 94.3 0.024 8.1E-07 45.3 3.0 24 51-74 10-33 (186)
416 3def_A T7I23.11 protein; chlor 94.3 0.042 1.4E-06 46.9 4.7 26 49-74 34-59 (262)
417 1mh1_A RAC1; GTP-binding, GTPa 94.3 0.026 8.9E-07 45.0 3.1 23 52-74 6-28 (186)
418 2gk6_A Regulator of nonsense t 94.3 0.049 1.7E-06 52.8 5.6 35 52-86 196-230 (624)
419 2efe_B Small GTP-binding prote 94.2 0.027 9.1E-07 44.7 3.2 24 51-74 12-35 (181)
420 1xx6_A Thymidine kinase; NESG, 94.2 0.053 1.8E-06 43.9 4.9 29 50-78 7-35 (191)
421 3gd7_A Fusion complex of cysti 94.2 0.023 8E-07 51.5 3.0 25 50-74 46-70 (390)
422 2a9k_A RAS-related protein RAL 94.2 0.027 9.2E-07 44.9 3.1 24 51-74 18-41 (187)
423 3bwd_D RAC-like GTP-binding pr 94.2 0.027 9.2E-07 44.7 3.1 23 52-74 9-31 (182)
424 3dz8_A RAS-related protein RAB 94.2 0.026 9E-07 45.4 3.1 22 53-74 25-46 (191)
425 2atv_A RERG, RAS-like estrogen 94.2 0.028 9.4E-07 45.5 3.2 24 51-74 28-51 (196)
426 3kjh_A CO dehydrogenase/acetyl 94.2 0.039 1.3E-06 46.5 4.2 33 54-86 3-35 (254)
427 2g6b_A RAS-related protein RAB 94.2 0.028 9.5E-07 44.5 3.1 24 51-74 10-33 (180)
428 2g3y_A GTP-binding protein GEM 94.2 0.026 9E-07 46.5 3.1 22 52-73 38-59 (211)
429 3gmt_A Adenylate kinase; ssgci 94.2 0.03 1E-06 46.7 3.4 24 52-75 9-32 (230)
430 1bif_A 6-phosphofructo-2-kinas 94.2 0.044 1.5E-06 51.2 4.9 28 49-76 37-64 (469)
431 3t1o_A Gliding protein MGLA; G 94.2 0.027 9.2E-07 45.3 3.0 25 51-75 14-38 (198)
432 3cbq_A GTP-binding protein REM 94.2 0.02 7E-07 46.4 2.3 24 50-73 22-45 (195)
433 3t5g_A GTP-binding protein RHE 94.2 0.029 9.9E-07 44.6 3.2 25 50-74 5-29 (181)
434 1vg8_A RAS-related protein RAB 94.2 0.037 1.3E-06 45.0 3.9 25 50-74 7-31 (207)
435 3clv_A RAB5 protein, putative; 94.2 0.028 9.7E-07 45.4 3.2 24 51-74 7-30 (208)
436 1moz_A ARL1, ADP-ribosylation 94.1 0.031 1.1E-06 44.5 3.3 24 50-73 17-40 (183)
437 1zd9_A ADP-ribosylation factor 94.1 0.029 1E-06 45.0 3.1 24 51-74 22-45 (188)
438 2ew1_A RAS-related protein RAB 94.1 0.027 9.3E-07 46.0 3.0 24 51-74 26-49 (201)
439 2gza_A Type IV secretion syste 94.1 0.028 9.5E-07 50.6 3.2 27 51-77 175-201 (361)
440 3tw8_B RAS-related protein RAB 94.1 0.034 1.2E-06 44.0 3.5 25 50-74 8-32 (181)
441 2a5j_A RAS-related protein RAB 94.1 0.03 1E-06 45.1 3.1 24 51-74 21-44 (191)
442 3hdt_A Putative kinase; struct 94.1 0.037 1.3E-06 46.0 3.8 27 50-76 13-39 (223)
443 2gf9_A RAS-related protein RAB 94.1 0.03 1E-06 45.0 3.1 24 51-74 22-45 (189)
444 2fh5_B SR-beta, signal recogni 94.1 0.029 1E-06 46.0 3.1 24 51-74 7-30 (214)
445 2fg5_A RAB-22B, RAS-related pr 94.1 0.029 9.8E-07 45.3 3.0 24 51-74 23-46 (192)
446 4bas_A ADP-ribosylation factor 94.0 0.035 1.2E-06 44.8 3.6 26 49-74 15-40 (199)
447 1z06_A RAS-related protein RAB 94.0 0.032 1.1E-06 44.8 3.2 24 51-74 20-43 (189)
448 3reg_A RHO-like small GTPase; 94.0 0.031 1.1E-06 45.1 3.1 24 51-74 23-46 (194)
449 1gwn_A RHO-related GTP-binding 94.0 0.038 1.3E-06 45.2 3.7 25 50-74 27-51 (205)
450 1pui_A ENGB, probable GTP-bind 94.0 0.019 6.5E-07 47.0 1.8 25 50-74 25-49 (210)
451 2bov_A RAla, RAS-related prote 94.0 0.046 1.6E-06 44.4 4.2 24 51-74 14-37 (206)
452 3lxx_A GTPase IMAP family memb 94.0 0.039 1.3E-06 46.3 3.8 26 49-74 27-52 (239)
453 2obl_A ESCN; ATPase, hydrolase 94.0 0.037 1.3E-06 49.4 3.8 28 50-77 70-97 (347)
454 1zbd_A Rabphilin-3A; G protein 94.0 0.03 1E-06 45.5 2.9 24 51-74 8-31 (203)
455 1x6v_B Bifunctional 3'-phospho 93.9 0.042 1.5E-06 52.9 4.3 27 50-76 51-77 (630)
456 3oes_A GTPase rhebl1; small GT 93.9 0.03 1E-06 45.5 3.0 25 50-74 23-47 (201)
457 2p5s_A RAS and EF-hand domain 93.9 0.033 1.1E-06 45.2 3.1 24 51-74 28-51 (199)
458 1f2t_A RAD50 ABC-ATPase; DNA d 93.9 0.041 1.4E-06 42.6 3.5 25 51-75 23-47 (149)
459 3tkl_A RAS-related protein RAB 93.9 0.033 1.1E-06 44.8 3.1 24 51-74 16-39 (196)
460 2qu8_A Putative nucleolar GTP- 93.9 0.034 1.2E-06 46.3 3.3 26 49-74 27-52 (228)
461 1tf7_A KAIC; homohexamer, hexa 93.9 0.056 1.9E-06 51.3 5.1 48 39-86 269-316 (525)
462 1u0l_A Probable GTPase ENGC; p 93.9 0.046 1.6E-06 47.8 4.1 24 52-75 170-193 (301)
463 1x3s_A RAS-related protein RAB 93.8 0.035 1.2E-06 44.6 3.1 23 52-74 16-38 (195)
464 1f6b_A SAR1; gtpases, N-termin 93.8 0.034 1.2E-06 45.2 3.1 23 51-73 25-47 (198)
465 2q3h_A RAS homolog gene family 93.8 0.03 1E-06 45.4 2.7 24 51-74 20-43 (201)
466 2bcg_Y Protein YP2, GTP-bindin 93.8 0.033 1.1E-06 45.4 3.0 24 51-74 8-31 (206)
467 2o52_A RAS-related protein RAB 93.8 0.029 1E-06 45.6 2.6 24 51-74 25-48 (200)
468 1ksh_A ARF-like protein 2; sma 93.8 0.028 9.6E-07 44.9 2.4 25 50-74 17-41 (186)
469 4dzz_A Plasmid partitioning pr 93.8 0.055 1.9E-06 44.0 4.2 35 52-86 2-37 (206)
470 2gf0_A GTP-binding protein DI- 93.7 0.05 1.7E-06 43.8 3.9 24 51-74 8-31 (199)
471 1ny5_A Transcriptional regulat 93.7 0.07 2.4E-06 48.5 5.2 48 28-75 137-184 (387)
472 2h17_A ADP-ribosylation factor 93.7 0.027 9.2E-07 44.9 2.2 24 51-74 21-44 (181)
473 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.03 1E-06 49.7 2.7 88 51-147 171-258 (330)
474 2qnr_A Septin-2, protein NEDD5 93.7 0.027 9.4E-07 49.2 2.4 21 53-73 20-40 (301)
475 2rcn_A Probable GTPase ENGC; Y 93.7 0.038 1.3E-06 49.4 3.3 34 37-75 206-239 (358)
476 3cph_A RAS-related protein SEC 93.6 0.039 1.3E-06 45.1 3.1 24 51-74 20-43 (213)
477 2fv8_A H6, RHO-related GTP-bin 93.6 0.038 1.3E-06 45.2 3.0 24 51-74 25-48 (207)
478 2dpy_A FLII, flagellum-specifi 93.6 0.043 1.5E-06 50.6 3.7 28 50-77 156-183 (438)
479 2b6h_A ADP-ribosylation factor 93.6 0.034 1.2E-06 44.9 2.6 24 50-73 28-51 (192)
480 2j1l_A RHO-related GTP-binding 93.6 0.036 1.2E-06 45.6 2.9 24 51-74 34-57 (214)
481 2atx_A Small GTP binding prote 93.6 0.039 1.3E-06 44.4 3.0 23 52-74 19-41 (194)
482 1ega_A Protein (GTP-binding pr 93.6 0.046 1.6E-06 47.8 3.6 25 50-74 7-31 (301)
483 3llu_A RAS-related GTP-binding 93.6 0.034 1.2E-06 45.0 2.6 24 51-74 20-43 (196)
484 2fu5_C RAS-related protein RAB 93.5 0.024 8E-07 45.2 1.6 24 51-74 8-31 (183)
485 2hup_A RAS-related protein RAB 93.5 0.041 1.4E-06 44.8 3.0 24 51-74 29-52 (201)
486 2orv_A Thymidine kinase; TP4A 93.5 0.093 3.2E-06 43.6 5.1 108 51-167 19-126 (234)
487 3q3j_B RHO-related GTP-binding 93.5 0.043 1.5E-06 45.2 3.1 24 51-74 27-50 (214)
488 2il1_A RAB12; G-protein, GDP, 93.5 0.039 1.3E-06 44.4 2.8 24 51-74 26-49 (192)
489 2j0v_A RAC-like GTP-binding pr 93.5 0.041 1.4E-06 45.0 3.0 24 51-74 9-32 (212)
490 1knx_A Probable HPR(Ser) kinas 93.4 0.043 1.5E-06 47.9 3.1 24 51-74 147-170 (312)
491 2gco_A H9, RHO-related GTP-bin 93.4 0.042 1.4E-06 44.7 3.0 24 51-74 25-48 (201)
492 3bfv_A CAPA1, CAPB2, membrane 93.4 0.11 3.6E-06 44.7 5.6 50 37-86 66-118 (271)
493 2woo_A ATPase GET3; tail-ancho 93.4 0.081 2.8E-06 46.9 4.9 37 49-85 17-53 (329)
494 3k53_A Ferrous iron transport 93.4 0.047 1.6E-06 46.9 3.3 23 52-74 4-26 (271)
495 2oze_A ORF delta'; para, walke 93.4 0.047 1.6E-06 47.5 3.3 46 37-85 23-71 (298)
496 3fkq_A NTRC-like two-domain pr 93.4 0.071 2.4E-06 48.1 4.6 38 49-86 141-179 (373)
497 3iev_A GTP-binding protein ERA 93.4 0.053 1.8E-06 47.6 3.6 26 49-74 8-33 (308)
498 1ko7_A HPR kinase/phosphatase; 93.3 0.049 1.7E-06 47.6 3.3 24 51-74 144-167 (314)
499 3e2i_A Thymidine kinase; Zn-bi 93.2 0.076 2.6E-06 43.6 4.1 29 49-77 26-54 (219)
500 4i1u_A Dephospho-COA kinase; s 93.2 0.057 1.9E-06 44.4 3.4 23 51-73 9-31 (210)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1e-38 Score=308.11 Aligned_cols=296 Identities=16% Similarity=0.143 Sum_probs=223.4
Q ss_pred ccccchHHHHHHHhccC-CCCeEEEEEEcCCCchHHHHHHHHHH----HhhcCcccceeeecccccccCC-CchHHHHHH
Q 037416 31 VGVESTVDEIESLLGVE-SKGVYALGIWGISGIGKTAIARAIFH----KISGDFECSCFLENVREESQRP-GGLACLRQK 104 (362)
Q Consensus 31 vGR~~el~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 104 (362)
+||+.++++|.++|... ....++|+|+|+||+||||||+++++ +...+|+..+|++ .+... .+...+...
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999999754 34579999999999999999999996 5788999999996 33211 467788888
Q ss_pred HHHHHhcCCC-----CCCc------hHHHHHhhCCc-eEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhh
Q 037416 105 LLSNLLKDKN-----VIPY------IDLNFRRLSRM-KVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN 172 (362)
Q Consensus 105 l~~~~~~~~~-----~~~~------~~~~~~~l~~~-~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~ 172 (362)
++..+..... .... ...+...+.++ ++||||||+|+..++ .+.. .++++||||||+..+...
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 8888765421 1111 34577888886 999999999988765 2222 168999999999988777
Q ss_pred cCCC-ceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCHHHHHHHHHH-Hhcc
Q 037416 173 WGVS-KIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYEREKEVWESAINK-LQRI 250 (362)
Q Consensus 173 ~~~~-~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~-l~~~ 250 (362)
++.. ..+++++|+.+++++||...++.... ....++.+.+|++.|+|+||||+.+|+.++... +.|...+.. +...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc
Confidence 6533 57999999999999999998755432 245677899999999999999999999998774 334333332 2222
Q ss_pred CCccHHHHHhccccCCChhhhhhhh-----------hhhccCCCccHHHHHHHHHHc--CCCc-----------hhhHHH
Q 037416 251 LHPSILEVLKISYDGLDNKEKNIFL-----------DVACFFRGEHVNLVMKFLNAS--GFYP-----------EIGIRV 306 (362)
Q Consensus 251 ~~~~~~~~~~~~~~~L~~~~~~~l~-----------~ls~~~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~ 306 (362)
....+...+..+|+.|+++.+.+|. +||+||.+++.. ..+|.++ |+.. ...++.
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHH
Confidence 3455667777888888777777777 999999887666 4567666 3332 237999
Q ss_pred HhhccceEEcc---CCcEEecHHHHHHHHHHHHhhcC
Q 037416 307 LVDKSLIAIDS---HKKITMLDLLQELGREIVRQESI 340 (362)
Q Consensus 307 L~~~~Li~~~~---~~~~~~H~li~~~~~~~~~~~~~ 340 (362)
|++++|++... ...|.||++||++|++++.+++.
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999998754 23599999999999988766653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-36 Score=317.64 Aligned_cols=305 Identities=19% Similarity=0.234 Sum_probs=236.3
Q ss_pred CCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh---hcCcccceeeecccccccCCCch
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI---SGDFECSCFLENVREESQRPGGL 98 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 98 (362)
++|+.+..||||+.++++|.++|...++..++|+|+|+||+||||||++++++. ..+|...+||....... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD--KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC--HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC--chHH
Confidence 467778889999999999999997656678999999999999999999999873 45566666544333211 1123
Q ss_pred HHHHHHHHHHHhcCCC----CCCchHH----HHHhhCCc--eEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChH
Q 037416 99 ACLRQKLLSNLLKDKN----VIPYIDL----NFRRLSRM--KVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQ 168 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~----~~~~~~~----~~~~l~~~--~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~ 168 (362)
......+...+..... .....+. +...+.++ ++||||||+|+...+..+ .++++||+|||+..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3334445555443322 1222333 55556555 999999999988776654 57889999999987
Q ss_pred HHhh-cCCCceEEcCC-CCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCHHHHHHHHHH
Q 037416 169 VLRN-WGVSKIYEMQA-LEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYEREKEVWESAINK 246 (362)
Q Consensus 169 ~~~~-~~~~~~~~l~~-l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~~~~~ 246 (362)
+... ......+.+++ |+.++++++|...+... ....++.+.+|++.|+|+||||+.+|++++..+ ..|...++.
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 7644 34456788986 99999999999877332 233456799999999999999999999998765 468888888
Q ss_pred HhccCC-----------ccHHHHHhccccCCChhhhhhhhhhhccCCC--ccHHHHHHHHHHcCCCchhhHHHHhhccce
Q 037416 247 LQRILH-----------PSILEVLKISYDGLDNKEKNIFLDVACFFRG--EHVNLVMKFLNASGFYPEIGIRVLVDKSLI 313 (362)
Q Consensus 247 l~~~~~-----------~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Li 313 (362)
+..... ..+..++..+|+.|+++++.+|++||+||.+ ++.+.+..+|..++......++.|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 765321 4589999999999999999999999999976 688899999987766678899999999999
Q ss_pred EEccCCc---EEecHHHHHHHHHHHHhhc
Q 037416 314 AIDSHKK---ITMLDLLQELGREIVRQES 339 (362)
Q Consensus 314 ~~~~~~~---~~~H~li~~~~~~~~~~~~ 339 (362)
+...++. |+||+++|+|+++.+.++.
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 9876664 9999999999999876653
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=288.97 Aligned_cols=294 Identities=20% Similarity=0.246 Sum_probs=219.5
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh---hcCcc-cceeeecccccccCCCch
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI---SGDFE-CSCFLENVREESQRPGGL 98 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~ 98 (362)
.|+.+..||||+.++++|.+++....++.++|+|+|++|+||||||.+++++. ...|. .++|+. .... +.
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~~ 192 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----DK 192 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----CH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----ch
Confidence 67778889999999999999997655668999999999999999999999864 56675 455554 3221 11
Q ss_pred HHHHHHH---HHHHhcCC----CCCCchHH----HHHhhCC--ceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeC
Q 037416 99 ACLRQKL---LSNLLKDK----NVIPYIDL----NFRRLSR--MKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTR 165 (362)
Q Consensus 99 ~~~~~~l---~~~~~~~~----~~~~~~~~----~~~~l~~--~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr 165 (362)
..+...+ ...+.... ........ +...+.+ +++||||||+|+...+..+ .++++||+|||
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR 265 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECC
Confidence 2222222 23332111 11222222 4444443 7899999999987665543 56789999999
Q ss_pred ChHHHhhcCCCceEEc---CCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCCCHHHHHH
Q 037416 166 NKQVLRNWGVSKIYEM---QALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYEREKEVWES 242 (362)
Q Consensus 166 ~~~~~~~~~~~~~~~l---~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~~~~~~~~ 242 (362)
+......+. ...+.+ ++|+.+++.++|...++.. .....+.+..|++.|+|+|+||+.+|..++... ..|..
T Consensus 266 ~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 266 DKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp CGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred CcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 987665543 233444 5899999999999887542 112245789999999999999999999998754 36888
Q ss_pred HHHHHhccC-----------CccHHHHHhccccCCChhhhhhhhhhhccCCC--ccHHHHHHHHHHcCCCchhhHHHHhh
Q 037416 243 AINKLQRIL-----------HPSILEVLKISYDGLDNKEKNIFLDVACFFRG--EHVNLVMKFLNASGFYPEIGIRVLVD 309 (362)
Q Consensus 243 ~~~~l~~~~-----------~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~ 309 (362)
.++.+.... ..++..++..+|+.|+++.+.+|.++|+|+.+ ++.+.+..+|+.+.......++.|++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 420 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHh
Confidence 888776532 24788999999999999999999999999875 78888999887654556778999999
Q ss_pred ccceEEccCC---cEEecHHHHHHHHHH
Q 037416 310 KSLIAIDSHK---KITMLDLLQELGREI 334 (362)
Q Consensus 310 ~~Li~~~~~~---~~~~H~li~~~~~~~ 334 (362)
+||+....++ +|+||+++|+++++.
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999865432 599999999999988
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-33 Score=278.19 Aligned_cols=297 Identities=15% Similarity=0.110 Sum_probs=212.0
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH--hhcCccc-ceeeecccccccCCCchHHHHHH
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK--ISGDFEC-SCFLENVREESQRPGGLACLRQK 104 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (362)
+..|||+.++++|.++|... +..++|+|+|+||+||||||++++++ +..+|+. ++|++ +.. ..+...+...
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~----~~d~~~IL~~ 201 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN----CNSPETVLEM 201 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCC----SSSHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCC----CCCHHHHHHH
Confidence 44599999999999998742 34789999999999999999999974 5778887 55555 332 3344555555
Q ss_pred HHHHHhcCC---C-CC-------Cc----hHHHHHhh---CCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCC
Q 037416 105 LLSNLLKDK---N-VI-------PY----IDLNFRRL---SRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 105 l~~~~~~~~---~-~~-------~~----~~~~~~~l---~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
+...+.... . .. .. ...+...+ .++++||||||+|+...|+.+. ++++||||||+
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd 274 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccC
Confidence 544322110 0 00 01 11244433 6799999999999988887762 67899999999
Q ss_pred hHHHhhcCCCceEEcC------CCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcCC--CHH
Q 037416 167 KQVLRNWGVSKIYEMQ------ALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYER--EKE 238 (362)
Q Consensus 167 ~~~~~~~~~~~~~~l~------~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~~--~~~ 238 (362)
......+.....+.++ +|+.+|+++||...+ +.. . .+... +.|+|+|+||+.+|..++.. ...
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~---eICgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPR---EVLTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHH---HHCCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHH---HHhCCCHHHHHHHHHHHhCCCCCHH
Confidence 8776533222234455 899999999999885 322 1 12233 34999999999999999875 667
Q ss_pred HHHHHHHHHhccCCccHHHHHhccccCCChhh-hhhhhhhhccCCC--ccHHHHHHHHHHcC-CCchhhHHHHhhccceE
Q 037416 239 VWESAINKLQRILHPSILEVLKISYDGLDNKE-KNIFLDVACFFRG--EHVNLVMKFLNASG-FYPEIGIRVLVDKSLIA 314 (362)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~-~~~l~~ls~~~~~--~~~~~l~~~~~~~~-~~~~~~l~~L~~~~Li~ 314 (362)
.|... ....+..++..||+.|++++ |.+|++||+||.+ ++.+.+..+|..++ ......++.|+++||++
T Consensus 346 eW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq 418 (1221)
T 1vt4_I 346 NWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418 (1221)
T ss_dssp HHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSS
T ss_pred HHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEE
Confidence 77653 34679999999999999999 9999999999976 67788889998764 23567899999999999
Q ss_pred Ecc-CCcEEecHHHHHHHHHHHHhhcCCCCCCcccccchhHHHH
Q 037416 315 IDS-HKKITMLDLLQELGREIVRQESINPKNRSRLWHHEDIYEV 357 (362)
Q Consensus 315 ~~~-~~~~~~H~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (362)
.+. .++|+||+++++++ . .....+..+.|+..+.++..+
T Consensus 419 ~d~~~~rYrMHDLllELr-~---~~~e~~alHrRLvd~Y~~~~v 458 (1221)
T 1vt4_I 419 KQPKESTISIPSIYLELK-V---KLENEYALHRSIVDHYNIPKT 458 (1221)
T ss_dssp BCSSSSEEBCCCHHHHHH-H---HHSCCTTHHHHHHHHHHHHHH
T ss_pred EeCCCCEEEehHHHHHHh-c---CCCcHHHHHHHHHHHHHhhCc
Confidence 864 56799999988733 1 111133445555555554433
No 5
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.87 E-value=4.2e-21 Score=175.33 Aligned_cols=291 Identities=14% Similarity=0.131 Sum_probs=172.9
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
++..++.|+||+.+++.|.+ +.. ++++|+|++|+|||+|+++++++.... .+|+...........+...+.
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHH
Confidence 55567789999999999999 852 589999999999999999999986432 355542211000011223333
Q ss_pred HHHHHHHhc-------------CC-----C-----------CCCchHHHHHhhCC---ceEEEEEeCCCCch-----hhh
Q 037416 103 QKLLSNLLK-------------DK-----N-----------VIPYIDLNFRRLSR---MKVLIVFDDVTCFN-----QLE 145 (362)
Q Consensus 103 ~~l~~~~~~-------------~~-----~-----------~~~~~~~~~~~l~~---~~~llvlDd~~~~~-----~~~ 145 (362)
..+...+.. .. + ....+..+...+.. ++++|||||++... .+.
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 333322210 00 0 01233333333321 48999999995322 222
Q ss_pred HhhccCCCCCCCcEEEEEeCChHHHhhc-----------CC-CceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHH
Q 037416 146 SLIGSLDRLTPVSRIIITTRNKQVLRNW-----------GV-SKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSK 213 (362)
Q Consensus 146 ~l~~~~~~~~~~~~ilitsr~~~~~~~~-----------~~-~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 213 (362)
.++..+.....+.++|+|++.......+ +. ...+.+.+|+.+|+.+++...+......... ...
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~ 234 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEV 234 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHH
Confidence 2222211112467899999876432211 11 2579999999999999998765322222211 288
Q ss_pred HHHHcCCCchHHHHHhhhhcC-CCHHHHHH-HHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccCCCccHHHHHH
Q 037416 214 AMNYAQGVPLALNVLGCFLYE-REKEVWES-AINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFRGEHVNLVMK 291 (362)
Q Consensus 214 i~~~~~G~Pl~i~~~~~~l~~-~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~ 291 (362)
|+..|+|+|+++..++..+.. .....|.. ..+.........+..++... ..+++..+.++..+|+ .. +...+..
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~l~~la~-g~--~~~~l~~ 310 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGR-EIARKRYLNIMRTLSK-CG--KWSDVKR 310 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTT-CB--CHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHc-CC--CHHHHHH
Confidence 999999999999999876542 22222211 11111111111222222111 1678889999999998 33 6666665
Q ss_pred HHH-HcC-----CCchhhHHHHhhccceEEccCCcEE-ecHHHHHHH
Q 037416 292 FLN-ASG-----FYPEIGIRVLVDKSLIAIDSHKKIT-MLDLLQELG 331 (362)
Q Consensus 292 ~~~-~~~-----~~~~~~l~~L~~~~Li~~~~~~~~~-~H~li~~~~ 331 (362)
.+. ..+ ......++.|++.+||.... +.|. .|++++++.
T Consensus 311 ~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 311 ALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 432 112 22356799999999999874 5555 699999875
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.86 E-value=4.8e-21 Score=174.50 Aligned_cols=290 Identities=14% Similarity=0.135 Sum_probs=175.9
Q ss_pred CCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc-cCCCchHH
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES-QRPGGLAC 100 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 100 (362)
.|+..+..|+||+.+++.|.+++.. + +.++|+|++|+|||+|+++++++.. .+|+.+..... ....+...
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~---~-~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN---Y-PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREE 76 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH---C-SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc---C-CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHH
Confidence 3666778899999999999999863 2 6899999999999999999998752 45554222110 00123344
Q ss_pred HHHHHHHHHhc-----------------CCC-CCCchHHHH----HhhCC-ceEEEEEeCCCCch--------hhhHhhc
Q 037416 101 LRQKLLSNLLK-----------------DKN-VIPYIDLNF----RRLSR-MKVLIVFDDVTCFN--------QLESLIG 149 (362)
Q Consensus 101 ~~~~l~~~~~~-----------------~~~-~~~~~~~~~----~~l~~-~~~llvlDd~~~~~--------~~~~l~~ 149 (362)
+...+...+.. ..+ .......+. ..... ++++|||||++... .+..++.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 44444332211 000 012233322 22221 38999999996432 1112221
Q ss_pred cCCCCCCCcEEEEEeCChHHHhhc------------CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHH
Q 037416 150 SLDRLTPVSRIIITTRNKQVLRNW------------GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNY 217 (362)
Q Consensus 150 ~~~~~~~~~~ilitsr~~~~~~~~------------~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 217 (362)
.+.....+.++++|++.......+ .....+.+.+|+.+|+.+++...+...+.. ..++....++..
T Consensus 157 ~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~ 234 (350)
T 2qen_A 157 YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVEL 234 (350)
T ss_dssp HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHH
T ss_pred HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Confidence 111112467899998876432211 112479999999999999998765332221 235678899999
Q ss_pred cCCCchHHHHHhhhhcC-CCHHHHHHHHHHHhccCCccHHHHHhccccCC---ChhhhhhhhhhhccCCCccHHHHHHHH
Q 037416 218 AQGVPLALNVLGCFLYE-REKEVWESAINKLQRILHPSILEVLKISYDGL---DNKEKNIFLDVACFFRGEHVNLVMKFL 293 (362)
Q Consensus 218 ~~G~Pl~i~~~~~~l~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L---~~~~~~~l~~ls~~~~~~~~~~l~~~~ 293 (362)
|+|+|+++..++..+.. .....+ ...+. +.+...+...+..+ ++..+.++..+|+ . .++...+...+
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~-g-~~~~~~l~~~~ 305 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRA---MKRTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL-G-YNRWSLIRDYL 305 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHH---HHHHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-T-CCSHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHhccccHhHH---HHHHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh-C-CCCHHHHHHHH
Confidence 99999999998875432 222211 11111 11112222223333 6788999999988 3 36767776665
Q ss_pred HHc--CC---CchhhHHHHhhccceEEccCCcE-EecHHHHHHHH
Q 037416 294 NAS--GF---YPEIGIRVLVDKSLIAIDSHKKI-TMLDLLQELGR 332 (362)
Q Consensus 294 ~~~--~~---~~~~~l~~L~~~~Li~~~~~~~~-~~H~li~~~~~ 332 (362)
... +. .....++.|++.|||... ++.| ..|++++.|.+
T Consensus 306 ~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 306 AVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 321 11 234579999999999987 4555 45999998864
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.80 E-value=2.7e-18 Score=159.92 Aligned_cols=285 Identities=12% Similarity=0.078 Sum_probs=171.0
Q ss_pred cCCCCCCCCcccccchHHHHHHHh-cc--CC--CCeEEEEE--EcCCCchHHHHHHHHHHHhhcC-----ccc-ceeeec
Q 037416 21 FQPRDNKNQLVGVESTVDEIESLL-GV--ES--KGVYALGI--WGISGIGKTAIARAIFHKISGD-----FEC-SCFLEN 87 (362)
Q Consensus 21 ~~~~~~~~~~vGR~~el~~l~~~l-~~--~~--~~~~~v~I--~G~~GiGKTtLa~~~~~~~~~~-----~~~-~~~~~~ 87 (362)
+.|...++.|+||+.++++|.+++ .. .+ ...+.++| +|++|+|||+|++.+++.+... +.. .+|+.+
T Consensus 15 ~~~~~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 15 FDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp GSTTCCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred cCCccCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 345556688999999999999988 43 12 34567888 9999999999999999987542 122 344442
Q ss_pred ccccccCCCchHHHHHHHHHHHhcCCCC-CCc----hHHHHHhhC--CceEEEEEeCCCCc--------hhhhHhhccCC
Q 037416 88 VREESQRPGGLACLRQKLLSNLLKDKNV-IPY----IDLNFRRLS--RMKVLIVFDDVTCF--------NQLESLIGSLD 152 (362)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~----~~~~~~~l~--~~~~llvlDd~~~~--------~~~~~l~~~~~ 152 (362)
. . ..+...+...++..+....+. ... ...+...+. +++++|||||++.. ..+..+...+.
T Consensus 95 ~----~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 F----N-APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHE 169 (412)
T ss_dssp G----G-CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHH
T ss_pred C----C-CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHH
Confidence 1 1 345567777777766543221 111 222344433 67999999999542 22333322221
Q ss_pred CC---C--CCcEEEEEeCChHHHhhc---------CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHc
Q 037416 153 RL---T--PVSRIIITTRNKQVLRNW---------GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYA 218 (362)
Q Consensus 153 ~~---~--~~~~ilitsr~~~~~~~~---------~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~ 218 (362)
.. . .+..+|+|++...+...+ .....+.+++++.+++.+++..++..........++..+.+++.|
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY 249 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 11 2 345577788655432111 112349999999999999998765322222234467889999999
Q ss_pred C------CCchHHHHHhhhhcC---------CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccC--
Q 037416 219 Q------GVPLALNVLGCFLYE---------REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF-- 281 (362)
Q Consensus 219 ~------G~Pl~i~~~~~~l~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~-- 281 (362)
+ |+|..+..++..... .+...+...... ... ...+..++..||+..+.+|..++.+.
T Consensus 250 ~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~---~~~---~~~~~~~l~~l~~~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 250 GEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE---NEA---ASIQTHELEALSIHELIILRLIAEATLG 323 (412)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH---C---------CCSSSSSCHHHHHHHHHHHHHHHT
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---Hhc---cchHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9 999877665543210 122333222221 110 34456678899999999999888653
Q ss_pred --CCccHHHHHH----HH-HHcCCC------chhhHHHHhhccceEEc
Q 037416 282 --RGEHVNLVMK----FL-NASGFY------PEIGIRVLVDKSLIAID 316 (362)
Q Consensus 282 --~~~~~~~l~~----~~-~~~~~~------~~~~l~~L~~~~Li~~~ 316 (362)
..++...+.. +. ...+.. ....++.|++.|||...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 2355544332 22 222211 24578999999999864
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.72 E-value=1.7e-15 Score=139.74 Aligned_cols=304 Identities=13% Similarity=0.084 Sum_probs=182.7
Q ss_pred CCCCCCCcccccchHHHHHHHhccC--CC--CeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVE--SK--GVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGG 97 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~--~~--~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 97 (362)
+...++.++||+.+++++.+++... +. ..+.++|+|++|+|||+|++.++..+.... ...+++.+. . ..+
T Consensus 12 ~~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~----~-~~~ 86 (389)
T 1fnn_A 12 PSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF----I-YRN 86 (389)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT----T-CCS
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc----c-CCC
Confidence 3444578999999999999988751 12 234899999999999999999999876542 233444321 1 334
Q ss_pred hHHHHHHHHHHHhcCCCCC-Cch----HHHHHhh--CCceEEEEEeCCCC--chhhhHhhccCCCCC----CCcEEEEEe
Q 037416 98 LACLRQKLLSNLLKDKNVI-PYI----DLNFRRL--SRMKVLIVFDDVTC--FNQLESLIGSLDRLT----PVSRIIITT 164 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~-~~~----~~~~~~l--~~~~~llvlDd~~~--~~~~~~l~~~~~~~~----~~~~ilits 164 (362)
...+...+...+....+.. ... ..+...+ .+++.+|+||+++. ...+..+...+.... .+..+|+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~ 166 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVG 166 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEE
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEE
Confidence 5566666666554322211 111 1222222 35689999999964 344555555443322 366788887
Q ss_pred CChHHHhhcC-------CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHc---------CCCchHHHHH
Q 037416 165 RNKQVLRNWG-------VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYA---------QGVPLALNVL 228 (362)
Q Consensus 165 r~~~~~~~~~-------~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Pl~i~~~ 228 (362)
+......... ....+.+++++.++..+++...+..........++..+.+++.+ +|+|..+..+
T Consensus 167 ~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 167 HNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred CCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 7653332221 12369999999999999999876432222234568899999999 7998776555
Q ss_pred hhhhcC---------CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccC---C--CccHHHHHHHHH
Q 037416 229 GCFLYE---------REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF---R--GEHVNLVMKFLN 294 (362)
Q Consensus 229 ~~~l~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~---~--~~~~~~l~~~~~ 294 (362)
+..... .+............. ..+...+..|+...+.+|..++.+. . .++...+...+.
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~ 319 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYK 319 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHH
Confidence 443211 223333333333221 1223335678888888888777653 2 355555544433
Q ss_pred H----cC------CCchhhHHHHhhccceEEccC-------CcE-------EecHHHHHHHHHHHHhh
Q 037416 295 A----SG------FYPEIGIRVLVDKSLIAIDSH-------KKI-------TMLDLLQELGREIVRQE 338 (362)
Q Consensus 295 ~----~~------~~~~~~l~~L~~~~Li~~~~~-------~~~-------~~H~li~~~~~~~~~~~ 338 (362)
. .+ ......++.|...|||..... |.+ ..|++...+...++.++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 320 IVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2 11 112347999999999987432 222 23566666666655543
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=1.9e-15 Score=139.31 Aligned_cols=275 Identities=15% Similarity=0.033 Sum_probs=166.9
Q ss_pred CCCcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC--------cccceeeecccccccCCC
Q 037416 27 KNQLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGD--------FECSCFLENVREESQRPG 96 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 96 (362)
++.|+||+.+++++.+++.. .....+.++|+|++|+|||+|++.+++.+... ....+++.+... ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV----GG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH----CS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC----CC
Confidence 47799999999999987764 23446689999999999999999999986432 122334432211 11
Q ss_pred chHHHHHHHHHHHhcCCC---C---CCchHHHHHhhCCceEEEEEeCCCCchh-------hhHhhccCCCCCCCcEEEEE
Q 037416 97 GLACLRQKLLSNLLKDKN---V---IPYIDLNFRRLSRMKVLIVFDDVTCFNQ-------LESLIGSLDRLTPVSRIIIT 163 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~---~---~~~~~~~~~~l~~~~~llvlDd~~~~~~-------~~~l~~~~~~~~~~~~ilit 163 (362)
+...+...++..+..... . ......+...+...+.+|+|||++.... +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 445566666665532211 1 1123345666666555999999964322 22333222 56788888
Q ss_pred eCChHHH----hhc--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcC---CCchHHHHHhhhh--
Q 037416 164 TRNKQVL----RNW--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQ---GVPLALNVLGCFL-- 232 (362)
Q Consensus 164 sr~~~~~----~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~~~~l-- 232 (362)
++..... ... .....+.+++++.++..+++...+..........++..+.+++.++ |+|..+..+....
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 8764221 111 1123899999999999999998764221122334577888999998 9988543222221
Q ss_pred -----cCCCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccCC-CccHHHHHHHHHHcCCC------c
Q 037416 233 -----YEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFR-GEHVNLVMKFLNASGFY------P 300 (362)
Q Consensus 233 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~~-~~~~~~l~~~~~~~~~~------~ 300 (362)
..-+...+...++... ...+..++..|++.++.+|..++.... +-.......+....+.. .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 323 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRF 323 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHH
Confidence 1234566665555532 234556678899888888887776111 10112223333322211 2
Q ss_pred hhhHHHHhhccceEEc
Q 037416 301 EIGIRVLVDKSLIAID 316 (362)
Q Consensus 301 ~~~l~~L~~~~Li~~~ 316 (362)
...++.|.+.||+...
T Consensus 324 ~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 324 SDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4478899999999864
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=9.4e-16 Score=141.23 Aligned_cols=283 Identities=14% Similarity=0.077 Sum_probs=167.1
Q ss_pred CCCCCCCCcccccchHHHHHHHhccC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc---ccceeeecccccccCCC
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGVE--SKGVYALGIWGISGIGKTAIARAIFHKISGDF---ECSCFLENVREESQRPG 96 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 96 (362)
.+...++.|+||+.+++.|.+++... ....+.++|+|++|+|||+|++.++..+...+ ...+++.+.. ..
T Consensus 14 ~~~~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~-----~~ 88 (386)
T 2qby_A 14 LPDYIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ-----ID 88 (386)
T ss_dssp SSSCCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH-----HC
T ss_pred CCccCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC-----CC
Confidence 35555688999999999999988742 34567899999999999999999999875432 2334444211 22
Q ss_pred chHHHHHHHHHHHhcCCCC-CCc----hHHHHHhhC--CceEEEEEeCCCC------chhhhHhhccCCC-CCCCcEEEE
Q 037416 97 GLACLRQKLLSNLLKDKNV-IPY----IDLNFRRLS--RMKVLIVFDDVTC------FNQLESLIGSLDR-LTPVSRIII 162 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~-~~~----~~~~~~~l~--~~~~llvlDd~~~------~~~~~~l~~~~~~-~~~~~~ili 162 (362)
....+...+...+....+. ... ...+...+. +++.+|+||+++. ...+..+...+.. ...+..+|+
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~ 168 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIG 168 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEE
Confidence 3344455554443222111 111 222333332 4589999999953 2333344332211 134556777
Q ss_pred EeCChHHHhhcC-------CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcC---CCchHHHHHhhhh
Q 037416 163 TTRNKQVLRNWG-------VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQ---GVPLALNVLGCFL 232 (362)
Q Consensus 163 tsr~~~~~~~~~-------~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~~~~l 232 (362)
+++.......+. ....+.+++++.++..+++...+..........++..+.+++.++ |+|..+..++...
T Consensus 169 ~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 169 ITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp EESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred EECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777653322211 124799999999999999998653222222345677888998888 9999654443322
Q ss_pred c---------CCCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccC----CCccHHHH----HHHHHH
Q 037416 233 Y---------EREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF----RGEHVNLV----MKFLNA 295 (362)
Q Consensus 233 ~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l----~~~~~~ 295 (362)
. .-+...+........ ...+...+..+++..+.+|..++.+. ..++...+ ..+...
T Consensus 249 ~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 249 GEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 123444444444331 23455667788888888888777432 22444333 222222
Q ss_pred ---cC---CCchhhHHHHhhccceEEc
Q 037416 296 ---SG---FYPEIGIRVLVDKSLIAID 316 (362)
Q Consensus 296 ---~~---~~~~~~l~~L~~~~Li~~~ 316 (362)
.. ......++.|.+.|+|...
T Consensus 322 ~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 11 1134579999999999863
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.65 E-value=8.5e-15 Score=134.91 Aligned_cols=282 Identities=14% Similarity=0.088 Sum_probs=167.5
Q ss_pred CCCCCCCcccccchHHHHHHHhccC--CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeeecccccccC
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVE--SKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLENVREESQR 94 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~~ 94 (362)
+...++.|+||+.+++.+.+++... ....+.++|+|++|+|||++++.+++.+... ....+++. +..
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~~---- 88 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-ARH---- 88 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TTT----
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CCc----
Confidence 4445588999999999999988642 3456789999999999999999999987432 12233343 211
Q ss_pred CCchHHHHHHHHHHHhcCCCCC-Cc----hHHHHHhh--CCceEEEEEeCCCCchh-------hhHhhccCCCC--CCCc
Q 037416 95 PGGLACLRQKLLSNLLKDKNVI-PY----IDLNFRRL--SRMKVLIVFDDVTCFNQ-------LESLIGSLDRL--TPVS 158 (362)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~-~~----~~~~~~~l--~~~~~llvlDd~~~~~~-------~~~l~~~~~~~--~~~~ 158 (362)
..+...+...+...+....+.. .. ...+...+ .+++.+|+||+++.... +..+....... ..+.
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~ 168 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWV 168 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----C
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceE
Confidence 3445566666766664433211 11 22344444 34689999999964332 22223222211 3455
Q ss_pred EEEEEeCChHHHhh-----cCC--CceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcC---CCchHHHHH
Q 037416 159 RIIITTRNKQVLRN-----WGV--SKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQ---GVPLALNVL 228 (362)
Q Consensus 159 ~ilitsr~~~~~~~-----~~~--~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Pl~i~~~ 228 (362)
.+|++++....... ... ...+.+++++.++..+++...+..........++..+.+++.++ |+|..+..+
T Consensus 169 ~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~ 248 (387)
T 2v1u_A 169 SLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDL 248 (387)
T ss_dssp EEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred EEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHH
Confidence 67777765422111 111 24789999999999999998764311122233456888889998 999554333
Q ss_pred hhhhc------C---CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhc-cC--CCccHHHHHHHH---
Q 037416 229 GCFLY------E---REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVAC-FF--RGEHVNLVMKFL--- 293 (362)
Q Consensus 229 ~~~l~------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~-~~--~~~~~~~l~~~~--- 293 (362)
+.... . -+...+...+.... ...+..++..+++.++.++..++. +. ..++...+.+..
T Consensus 249 l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 249 LRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 22221 1 24555555554432 224555678899888888877764 32 224444333322
Q ss_pred -HHcCC------CchhhHHHHhhccceEEc
Q 037416 294 -NASGF------YPEIGIRVLVDKSLIAID 316 (362)
Q Consensus 294 -~~~~~------~~~~~l~~L~~~~Li~~~ 316 (362)
...+. .....++.|...|++...
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22121 123478999999999864
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=1.2e-13 Score=118.71 Aligned_cols=196 Identities=13% Similarity=0.064 Sum_probs=120.2
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|...+.|+||+.+++.|..++..+. ..+.++|+|++|+|||+|++.+++.+....... ...+. .... ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~-~~~~~--------~~~~-~~ 87 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCG--------VCDN-CR 87 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSC-SSCCS--------CSHH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCc--------ccHH-HH
Confidence 4445569999999999999987432 245789999999999999999998875432111 00000 0000 00
Q ss_pred HHHHHH-----hcCCCCCCc---hHHHHHhh-----CCceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCChH
Q 037416 104 KLLSNL-----LKDKNVIPY---IDLNFRRL-----SRMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNKQ 168 (362)
Q Consensus 104 ~l~~~~-----~~~~~~~~~---~~~~~~~l-----~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~~ 168 (362)
.+.... ......... +..+...+ .+++.+|++||++ +...+..+...+.....+..+|++++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 000000 000000000 11122221 3467899999995 34455566555444456678888886542
Q ss_pred -HHhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhh
Q 037416 169 -VLRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFL 232 (362)
Q Consensus 169 -~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l 232 (362)
+... ......+.+++++.++..+++...+..... ...++..+.|++.|+|+|..+..++..+
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1111 233468999999999999999987754322 2345778899999999999988776544
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.54 E-value=2e-13 Score=115.53 Aligned_cols=189 Identities=13% Similarity=0.151 Sum_probs=117.0
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecccccccCCCchHHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
+|.....++||+..++.+.+++... ..+.++|+|++|+|||++++.+++.+... +...+...+... ......+
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 85 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD----ERGIDVV 85 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC----TTCHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc----ccChHHH
Confidence 3444567999999999999999743 33348999999999999999999986433 222222211111 1122222
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChHH-Hhh-cCCCc
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQV-LRN-WGVSK 177 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~~-~~~-~~~~~ 177 (362)
...+ ........ ....++.+|++||++.. .....+...+.....++.+|+|++.... ... .....
T Consensus 86 ~~~~-~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 86 RHKI-KEFARTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (226)
T ss_dssp HHHH-HHHHTSCC----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHH-HHHhcccC----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCc
Confidence 2111 11111100 11256889999999643 3344444443333456778888875421 111 22345
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 178 IYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 178 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
.+.+++++.++..+++...+...+.. ..++..+.+++.++|+|..+.....
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 155 VFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999999999998876432222 3457788899999999997554433
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.6e-12 Score=115.29 Aligned_cols=187 Identities=14% Similarity=0.228 Sum_probs=114.5
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecccccccCCCchHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
|...+.++||+..++.|.+++..+ ..+.++|+|++|+|||++++.+++.+... +...+...+... ..... ..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~----~~~~~-~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG--NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD----DRGID-VV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS----CCSHH-HH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc----ccChH-HH
Confidence 444566999999999999998743 33338999999999999999999986432 222222211111 11222 22
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhh-CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChH-HHhh-cCCCc
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRL-SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQ-VLRN-WGVSK 177 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~~-~~~~~ 177 (362)
+.+...+..... .. .+++.++|+||++.. .....+...+.....++.+|++++... +.+. .+...
T Consensus 90 ~~~~~~~~~~~~----------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 90 RNQIKHFAQKKL----------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HTHHHHHHHBCC----------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHHHHhccc----------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 222222211000 11 345789999999643 334444433333345677888776542 1111 23445
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH-HHHHh
Q 037416 178 IYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA-LNVLG 229 (362)
Q Consensus 178 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~-i~~~~ 229 (362)
.+.+.+++.++..+++...+...+.. ..++..+.+++.++|+|.. ++.+.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999999999998876432221 3457788999999999965 44443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.32 E-value=3.6e-11 Score=107.96 Aligned_cols=264 Identities=14% Similarity=0.106 Sum_probs=152.5
Q ss_pred CCCCCCcccccchHHHHHHHhcc---CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGV---ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~---~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.|+|++..+..+..++.. .....+.++|+|++|+|||++|+.+++.+...| +++. ... ......
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~----~~~~~~ 79 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA----IEKPGD 79 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT----CCSHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc----cCChHH
Confidence 44556799999999999888753 122346789999999999999999999764322 2222 111 111111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch--hhhHhhccCCCC------------------CCCcEE
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN--QLESLIGSLDRL------------------TPVSRI 160 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~------------------~~~~~i 160 (362)
+...+ .. ....+.+++||+++... ....+...+... .....+
T Consensus 80 l~~~l----~~--------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 80 LAAIL----AN--------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp HHHHH----TT--------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred HHHHH----HH--------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11111 10 01346699999996443 223332211100 023456
Q ss_pred EEEeCCh-HHHhhc-C-CCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC---
Q 037416 161 IITTRNK-QVLRNW-G-VSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE--- 234 (362)
Q Consensus 161 litsr~~-~~~~~~-~-~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~--- 234 (362)
|.+|... .+...+ . ....+.+++++.++..+++...+..... ...++..+.+++.++|+|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 6666533 111111 1 2257899999999999999887644322 244678899999999999988776655432
Q ss_pred ------CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhh-cc-CCCccHHHHHHHHHHcCCCchhhHHH
Q 037416 235 ------REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA-CF-FRGEHVNLVMKFLNASGFYPEIGIRV 306 (362)
Q Consensus 235 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~~~l~~ 306 (362)
.....+...... +......++..++.++..+. .+ .+.++...+...++.........++.
T Consensus 220 ~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 220 VAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp TTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred HhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 122333222222 22234556676777776554 33 34467777777654432223333444
Q ss_pred -HhhccceEEccCCcEEecHHHH
Q 037416 307 -LVDKSLIAIDSHKKITMLDLLQ 328 (362)
Q Consensus 307 -L~~~~Li~~~~~~~~~~H~li~ 328 (362)
+++.+++.....|+ .+.+...
T Consensus 288 ~~i~~~li~~~~~g~-~~~~~~~ 309 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGR-VPTELAY 309 (324)
T ss_dssp HHHHTTSEEEETTEE-EECHHHH
T ss_pred HHHHhcchhcCCccc-eecHHHH
Confidence 78899998775554 3344333
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.31 E-value=4.8e-11 Score=106.73 Aligned_cols=186 Identities=12% Similarity=0.117 Sum_probs=115.5
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc-CcccceeeecccccccCCCchHHHHH
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
..-+.++|++..++.+.+++..+ ..+.++|+|++|+|||++++.+++.+.. .+...+...+...... .........
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIK 90 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSSHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHHHHHH
Confidence 33456999999999999988742 3334899999999999999999998632 2222222211111100 111111111
Q ss_pred HHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChH-HHhh-cCCCceE
Q 037416 104 KLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQ-VLRN-WGVSKIY 179 (362)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~~-~~~~~~~ 179 (362)
.+. ...+ ...+++.++++|+++.. .....+...+......+.+|+++.... +.+. .+....+
T Consensus 91 ~~~----~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i 156 (319)
T 2chq_A 91 EFA----RTAP----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (319)
T ss_dssp HHH----HSCC----------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEE
T ss_pred HHH----hcCC----------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEE
Confidence 111 0000 01245789999999643 344556555555556777887776542 2111 2344689
Q ss_pred EcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 180 EMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 180 ~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
.+.+++.++..+++...+...+. ...++..+.++..++|++..+....
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 157 RFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999887644332 2346778899999999998754433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=1.3e-11 Score=110.78 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=114.1
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-ccceeeecccccccCCCchHHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-ECSCFLENVREESQRPGGLACL 101 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 101 (362)
.|..-+.++|++..++.|..++..+ ..+.++|+|++|+|||++|+.+++.+.... ...+...+... ......
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~-----~~~~~~ 92 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-----ERGINV 92 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC-----HHHHHT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc-----cCchHH
Confidence 3444456999999999999998743 333489999999999999999999864331 11111111110 000011
Q ss_pred HHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChHH-Hhh-cCCCc
Q 037416 102 RQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQV-LRN-WGVSK 177 (362)
Q Consensus 102 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~~-~~~-~~~~~ 177 (362)
.+..........+ ...+++.++++|+++.. .....+...+.....++.+|+++..... .+. .+...
T Consensus 93 ~~~~~~~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 93 IREKVKEFARTKP----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp THHHHHHHHHSCC----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HHHHHHHHHhhCC----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 1111111111000 11146789999999643 3444454444333456778888765421 111 11234
Q ss_pred eEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 178 IYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 178 ~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
.+.+.+++.++..+++...+...+. ...++..+.+++.++|+|..+..+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 7899999999999999877643322 13457788999999999997654443
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.25 E-value=1.5e-10 Score=105.96 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=116.1
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKL 105 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (362)
.-+.++||+..++.|..++..+ ...+.++|+|++|+|||++++.+++.+...... ....+ .... -+..+
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~--------~~~~-~~~~~ 82 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPC--------GVCD-NCREI 82 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-CSSCC--------SSSH-HHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCC--------cccH-HHHHH
Confidence 3455999999999999988743 234578999999999999999999886432110 00000 0000 00001
Q ss_pred HHHH-------hcC-CCCCCchHHHHHhh-----CCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEEeCChH-H
Q 037416 106 LSNL-------LKD-KNVIPYIDLNFRRL-----SRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIITTRNKQ-V 169 (362)
Q Consensus 106 ~~~~-------~~~-~~~~~~~~~~~~~l-----~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilitsr~~~-~ 169 (362)
.... ... ......+..+...+ .+++.++++||++. ......+...+........+|+++.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 0000 000 01122233333333 24568999999963 3445555544444445667777775432 1
Q ss_pred Hhh-cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 170 LRN-WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 170 ~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
... .+....+.+.+++.++..+++...+...+. ...++..+.+++.++|+|..+..+..
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 111 234568999999999999999877643222 13356788999999999998866543
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.24 E-value=4.3e-10 Score=101.54 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=150.5
Q ss_pred CCCCcccccchHHHHHHHhccC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHH
Q 037416 26 NKNQLVGVESTVDEIESLLGVE---SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
.-+.|+|++..++.+..++... ....+.++|+|++|+|||++|+.+++.+...| +.+. ... ......+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~----~~~~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM----IEKSGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG----CCSHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh----ccchhHHH
Confidence 4556999999999999988742 33455689999999999999999988864332 1121 111 11111111
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCC------------------CCCcEEEE
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRL------------------TPVSRIII 162 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~------------------~~~~~ili 162 (362)
..+ .. ...+.+++||+++.. .....+...+... .+...+|.
T Consensus 99 ~~~------------------~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 99 AIL------------------TN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp HHH------------------HT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred HHH------------------Hh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 111 01 235679999999643 2223332221110 11245665
Q ss_pred EeCChH-HHhh-c-CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC-----
Q 037416 163 TTRNKQ-VLRN-W-GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE----- 234 (362)
Q Consensus 163 tsr~~~-~~~~-~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~----- 234 (362)
+|.... +... . .....+.+++++.++..+++...+.... ....++..+.++..+.|+|..+..+...+..
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 237 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVN 237 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHT
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhh
Confidence 554332 1111 1 1236899999999999999987764332 1234677888999999999776555443210
Q ss_pred ----CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhhccC-CCccHHHHHHHHHHcCCCchhhHH-HHh
Q 037416 235 ----REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF-RGEHVNLVMKFLNASGFYPEIGIR-VLV 308 (362)
Q Consensus 235 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls~~~-~~~~~~~l~~~~~~~~~~~~~~l~-~L~ 308 (362)
.........+.. +......+...+++++..++-.. ..++...+...++.........++ .|.
T Consensus 238 ~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~ 305 (338)
T 3pfi_A 238 DEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLL 305 (338)
T ss_dssp TCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHH
T ss_pred cCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHH
Confidence 122222222221 22333445555566766665542 336677777776544333444566 888
Q ss_pred hccceEEccCCcEEec
Q 037416 309 DKSLIAIDSHKKITML 324 (362)
Q Consensus 309 ~~~Li~~~~~~~~~~H 324 (362)
+.|+|.....|+....
T Consensus 306 ~~gli~~~~~g~~~t~ 321 (338)
T 3pfi_A 306 ANGYIERTAKGRIASA 321 (338)
T ss_dssp HTTSEEEETTEEEECH
T ss_pred HcCceecCCCcccccH
Confidence 9999998866665433
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.18 E-value=5.2e-11 Score=101.93 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=105.3
Q ss_pred CCCCCCCCccccc---chHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCch
Q 037416 22 QPRDNKNQLVGVE---STVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGL 98 (362)
Q Consensus 22 ~~~~~~~~~vGR~---~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (362)
+++..-+.|+|++ ..++.+..+... +..+.++|+|++|+|||+|++.+++.+......+.++.. ..... ..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~---~~ 95 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASG--DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHAS---IS 95 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHT--CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGG---SC
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHH---HH
Confidence 3334456688743 556666666652 256778999999999999999999987654333444442 11111 00
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh----hhHhhccCCCC--CCCcEEEEEeCCh-----
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ----LESLIGSLDRL--TPVSRIIITTRNK----- 167 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~----~~~l~~~~~~~--~~~~~ilitsr~~----- 167 (362)
.. .. ..+ .++.++++||++.... ...+...+... .....+|+|++..
T Consensus 96 ~~-----------------~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 96 TA-----------------LL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GG-----------------GG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred HH-----------------HH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 00 001 3467999999953321 22222221111 1122477777632
Q ss_pred ----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 168 ----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 168 ----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
.+...+.....+.+++++.++..+++...+...+. ...++..+.+++.++|++..+..+..
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 11111112268999999999999999987743322 23467888999999999887765544
No 21
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.17 E-value=7.9e-11 Score=104.21 Aligned_cols=166 Identities=9% Similarity=0.028 Sum_probs=99.1
Q ss_pred CCcccccchHHHHHHHhcc--CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------c-cceeeecccccccCCCch
Q 037416 28 NQLVGVESTVDEIESLLGV--ESKGVYALGIWGISGIGKTAIARAIFHKISGDF------E-CSCFLENVREESQRPGGL 98 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~--~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 98 (362)
+.+.||++|++++...+.. ..+.++.+.|+|++|+|||++++.+++.+.... . ..+++.+.. ..+.
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~-----~~t~ 94 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE-----LAGM 94 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC-----CC--
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc-----cCCH
Confidence 3489999999999988875 345677899999999999999999999985432 1 223333222 3334
Q ss_pred HHHHHHHHHHHhcCCC-CCCc---hHHHHHhh---CCceEEEEEeCCCCchh---hhHhhccCCCCCCCcEEEEEeCChH
Q 037416 99 ACLRQKLLSNLLKDKN-VIPY---IDLNFRRL---SRMKVLIVFDDVTCFNQ---LESLIGSLDRLTPVSRIIITTRNKQ 168 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~-~~~~---~~~~~~~l---~~~~~llvlDd~~~~~~---~~~l~~~~~~~~~~~~ilitsr~~~ 168 (362)
..++..++.++..... .... +..+...+ .+++++++||+++.... +..+............+|.++...+
T Consensus 95 ~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 95 DALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 4556666666543221 1122 23333332 45689999999975432 2222211111122334444454321
Q ss_pred H----H-----hhcCCCceEEcCCCCHHHHHHHHHHhhhc
Q 037416 169 V----L-----RNWGVSKIYEMQALEYHHALELFCRHAFK 199 (362)
Q Consensus 169 ~----~-----~~~~~~~~~~l~~l~~~e~~~ll~~~~~~ 199 (362)
. . +.+ ....+.+++++.+|..+++..++..
T Consensus 175 ~~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 175 TIREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CCHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHHh
Confidence 1 1 122 1247899999999999999988743
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=8.1e-10 Score=100.25 Aligned_cols=197 Identities=12% Similarity=0.144 Sum_probs=113.2
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC--cccceeeecccccccCCCchHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD--FECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
.|..-+.++|++..++.+..++..+ ..+.++|+|++|+|||++++.++..+... +...+...+... .... .
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~----~~~~-~ 104 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD----ERGI-S 104 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS----CCCH-H
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc----ccch-H
Confidence 3444566999999999999998743 22338999999999999999999986421 221221111111 1111 1
Q ss_pred HHHHHHHHHhcCCC-CCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChH-HHhh-cCC
Q 037416 101 LRQKLLSNLLKDKN-VIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQ-VLRN-WGV 175 (362)
Q Consensus 101 ~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~~-~~~ 175 (362)
..+........... ..... .......+.+.++++|+++.. .....+...+.......++|+++.... +.+. .+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 105 IVREKVKNFARLTVSKPSKH-DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHTTHHHHHHHSCCCCCCTT-HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHhhhcccccchh-hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22222222111110 00000 001111235579999999633 333444433333345567777765431 1111 122
Q ss_pred CceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHh
Q 037416 176 SKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLG 229 (362)
Q Consensus 176 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~ 229 (362)
...+.+.+++.++....+...+...+. ...++..+.|++.++|+|..+....
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 347899999999999999887643322 2346788999999999998754433
No 23
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.10 E-value=2.1e-10 Score=94.37 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=43.1
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
|..-+.++||+.+++++.+++.. ...+.++|+|++|+|||++++.+++.+..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hccccccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 33456799999999999999863 34566899999999999999999998643
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.10 E-value=1.4e-09 Score=95.61 Aligned_cols=187 Identities=19% Similarity=0.251 Sum_probs=107.0
Q ss_pred CCCCCCCCcccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccc
Q 037416 22 QPRDNKNQLVGVESTVDEIESLLGVE-----------SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVRE 90 (362)
Q Consensus 22 ~~~~~~~~~vGR~~el~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~ 90 (362)
.|+..-+.++|.+..+++|.+.+... ....+.++|+|++|+|||+||+.++..+...+ +.+....-
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~~ 87 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVVGSEL 87 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEEGGGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehHHH
Confidence 35556677999999999998877421 13455699999999999999999999864332 11221111
Q ss_pred cccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCC--
Q 037416 91 ESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLD-- 152 (362)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~-- 152 (362)
..............+ +.......+.+|+||+++... .+..++..+.
T Consensus 88 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 151 (285)
T 3h4m_A 88 VKKFIGEGASLVKDI----------------FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF 151 (285)
T ss_dssp CCCSTTHHHHHHHHH----------------HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT
T ss_pred HHhccchHHHHHHHH----------------HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC
Confidence 111011111111111 112223457899999995321 1222222211
Q ss_pred CCCCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCC-CchHHH
Q 037416 153 RLTPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQG-VPLALN 226 (362)
Q Consensus 153 ~~~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~ 226 (362)
....+..+|.|+........ ......+.+++.+.++..+++...+....... ......++..+.| .|..+.
T Consensus 152 ~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 152 DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE---DVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC---cCCHHHHHHHcCCCCHHHHH
Confidence 12335567777764422211 12234788999999999999988764433222 1236778888887 454555
Q ss_pred HHhh
Q 037416 227 VLGC 230 (362)
Q Consensus 227 ~~~~ 230 (362)
.++.
T Consensus 229 ~l~~ 232 (285)
T 3h4m_A 229 AICT 232 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.08 E-value=6.1e-09 Score=94.61 Aligned_cols=187 Identities=15% Similarity=0.100 Sum_probs=107.1
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
++..-+.++|.+..++.|.+.+.. .....+.++|+|++|+|||+||+.++..+...| +.+. .....
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~-~~~l~ 154 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---FSIS-ASSLT 154 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEe-hHHhh
Confidence 444456799999999999987742 123456799999999999999999998763221 2222 11111
Q ss_pred cCC-CchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc-------------hhhhHhhccCC----CC
Q 037416 93 QRP-GGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF-------------NQLESLIGSLD----RL 154 (362)
Q Consensus 93 ~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~----~~ 154 (362)
... .......+.+ +.......+.+|+||+++.. .....++..+. ..
T Consensus 155 ~~~~g~~~~~~~~~----------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 155 SKWVGEGEKMVRAL----------------FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp CSSTTHHHHHHHHH----------------HHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred ccccchHHHHHHHH----------------HHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 100 0011111111 11112245789999999422 11222322221 11
Q ss_pred CCCcEEEEEeCChH-HHhhc--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCC-CchHHHHHhh
Q 037416 155 TPVSRIIITTRNKQ-VLRNW--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQG-VPLALNVLGC 230 (362)
Q Consensus 155 ~~~~~ilitsr~~~-~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~~~~ 230 (362)
..+..+|.||.... +.... .....+.++..+.++..+++...+...... ..+...+.|++.+.| .+..|..++.
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23445565665431 11111 233577899999999999998776433211 235678889999998 5556766665
Q ss_pred h
Q 037416 231 F 231 (362)
Q Consensus 231 ~ 231 (362)
.
T Consensus 297 ~ 297 (357)
T 3d8b_A 297 E 297 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.06 E-value=2.2e-09 Score=98.04 Aligned_cols=200 Identities=12% Similarity=0.013 Sum_probs=107.9
Q ss_pred CCCcccccchHHHH---HHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 27 KNQLVGVESTVDEI---ESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 27 ~~~~vGR~~el~~l---~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
.+.|+|++.....+ .+.+..+....+.++|+||+|+|||++|+.+++.+....... .+.+....+. .........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSL-EMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCS-SSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhc-ccchhHHHH
Confidence 55799999997774 444443333346899999999999999999999876432211 1111110111 112222222
Q ss_pred HHHHHHhc---------------------C---------CCC---CCchHH-H---HH--hhCCc----eEEEEEeCCCC
Q 037416 104 KLLSNLLK---------------------D---------KNV---IPYIDL-N---FR--RLSRM----KVLIVFDDVTC 140 (362)
Q Consensus 104 ~l~~~~~~---------------------~---------~~~---~~~~~~-~---~~--~l~~~----~~llvlDd~~~ 140 (362)
..+..... . ... ...+.. + .. ...++ +.+|+||+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 22111000 0 000 001111 1 11 11122 46999999963
Q ss_pred c--hhhhHhhccCCCCCCCcEEEEEeCC------------h-HHH-hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCC
Q 037416 141 F--NQLESLIGSLDRLTPVSRIIITTRN------------K-QVL-RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPD 204 (362)
Q Consensus 141 ~--~~~~~l~~~~~~~~~~~~ilitsr~------------~-~~~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~ 204 (362)
. .....+...+...... .+++++.. . .+. ........+.+++++.++..+++...+.....
T Consensus 201 l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-- 277 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-- 277 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--
T ss_pred cChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 3 3445555444433333 23333321 1 111 11123345899999999999999987644322
Q ss_pred CChHHHHHHHHHHcC-CCchHHHHHhhh
Q 037416 205 VGYEELSSKAMNYAQ-GVPLALNVLGCF 231 (362)
Q Consensus 205 ~~~~~~~~~i~~~~~-G~Pl~i~~~~~~ 231 (362)
...++..+.|++.+. |+|..+..+...
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~ 305 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITA 305 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 245678899999998 898877655543
No 27
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=3.8e-09 Score=100.75 Aligned_cols=191 Identities=15% Similarity=0.170 Sum_probs=106.9
Q ss_pred CCCCCCcccccchHHHHHHHhccCC---------------CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVES---------------KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENV 88 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~---------------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~ 88 (362)
|..-+.++|++..++.|.+++.... +..+.++|+||+|+|||++|+.+++.+. +. .+.+. .
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-A 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-T
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-C
Confidence 3345669999999999999987410 1347899999999999999999999872 11 22222 1
Q ss_pred cccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHH--hhCCceEEEEEeCCCCch-----hhhHhhccCCCCCCCcEEE
Q 037416 89 REESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFR--RLSRMKVLIVFDDVTCFN-----QLESLIGSLDRLTPVSRII 161 (362)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~l~~~~~llvlDd~~~~~-----~~~~l~~~~~~~~~~~~il 161 (362)
.. ... ..+....+............+..... ....++.+|++|+++... .+..+...+.. .+..+|
T Consensus 111 s~----~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 111 SD----VRS-KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp TS----CCC-HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred CC----cch-HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 11 111 12222221111111110011110100 123567899999995331 12333322221 223355
Q ss_pred EEeCCh---HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 162 ITTRNK---QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 162 itsr~~---~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
+++... .+.........+.+++++.++..+++...+...+.. ..++.++.|++.++|++..+..
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~--i~~~~l~~la~~s~GdiR~~i~ 250 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK--LDPNVIDRLIQTTRGDIRQVIN 250 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--CCTTHHHHHHHHTTTCHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHH
Confidence 555432 122222345679999999999999998766432211 2235688899999997665433
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.01 E-value=3.4e-09 Score=98.82 Aligned_cols=179 Identities=16% Similarity=0.240 Sum_probs=107.5
Q ss_pred CCCCCCcccccchH---HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTV---DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el---~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.++|.+..+ ..|...+.. +..+.++|+|++|+|||+||+.+++.+...|.. +. .. ......
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~-a~-----~~~~~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYANADVER---IS-AV-----TSGVKE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EE-TT-----TCCHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EE-ec-----cCCHHH
Confidence 45556799999988 778888763 334679999999999999999999986443211 11 10 122222
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEe-CChH--H-HhhcC
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITT-RNKQ--V-LRNWG 174 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilits-r~~~--~-~~~~~ 174 (362)
+...+ .... .....+++.+|+||+++.. ...+.++..+.. ....+|.+| .+.. + ....+
T Consensus 91 ir~~~-~~a~------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 91 IREAI-ERAR------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHHH-HHHH------------HHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHHH-HHHH------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC
Confidence 22111 1100 0111356789999999643 233444433332 223444444 3331 1 11123
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhhcCC-----CCCCChHHHHHHHHHHcCCCchHHHHH
Q 037416 175 VSKIYEMQALEYHHALELFCRHAFKQN-----HPDVGYEELSSKAMNYAQGVPLALNVL 228 (362)
Q Consensus 175 ~~~~~~l~~l~~~e~~~ll~~~~~~~~-----~~~~~~~~~~~~i~~~~~G~Pl~i~~~ 228 (362)
....+.+++++.++...++...+.... ......++..+.+++.++|++..+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 345788999999999999988764411 112345678899999999999876443
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.00 E-value=2e-08 Score=87.02 Aligned_cols=185 Identities=15% Similarity=0.150 Sum_probs=100.9
Q ss_pred CCCCcccccchHHHHHHHhcc---C-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCC
Q 037416 26 NKNQLVGVESTVDEIESLLGV---E-------SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRP 95 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (362)
.-+.++|.+...+.+.+++.. . ....+.++|+|++|+|||++|+.+++.+...+ +.+.+........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMAGAEFVEVIG 80 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEETTTTSSSST
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEechHHHHhhcc
Confidence 345689999888888765431 1 12355689999999999999999999864332 2222111100000
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-----------------hhhHhhccCCC--CCC
Q 037416 96 GGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-----------------QLESLIGSLDR--LTP 156 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-----------------~~~~l~~~~~~--~~~ 156 (362)
.........+ +.......+.+|+||+++... .+..++..+.. ...
T Consensus 81 ~~~~~~~~~~----------------~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 81 GLGAARVRSL----------------FKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp THHHHHHHHH----------------HHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ChhHHHHHHH----------------HHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0000111111 122222457899999996441 12233322211 123
Q ss_pred CcEEEEEeCChHHHh-hc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch-HHHHHhh
Q 037416 157 VSRIIITTRNKQVLR-NW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL-ALNVLGC 230 (362)
Q Consensus 157 ~~~ilitsr~~~~~~-~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~~~ 230 (362)
+..+|.|+....... .. .....+.++..+.++..+++...+....... ........++..+.|++- .|..+..
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 455666665443211 11 2235788999999999999988764433222 222345788888888765 4554443
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=7.5e-09 Score=93.92 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=108.9
Q ss_pred CCCCCCcccccchHHHHHHHh-ccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeec---------------
Q 037416 24 RDNKNQLVGVESTVDEIESLL-GVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLEN--------------- 87 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l-~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~--------------- 87 (362)
|..-+.++|++...+.|..++ ..+ ..+. ++|+|++|+||||+++.++..+.......+.+..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPR-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCC-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 334456999999999999988 532 2234 8999999999999999999964321111111100
Q ss_pred --------ccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCC
Q 037416 88 --------VREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPV 157 (362)
Q Consensus 88 --------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~ 157 (362)
.. .+..........+..+..+.......... .+ ..+..++-++++|+++.. .....+...+.....+
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 88 VSSPYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQVDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp EECSSEEEEC-CC----CCHHHHHHHHHHHTTTTC--------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ecccceEEec-HhhcCCcchHHHHHHHHHHHHhccccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 00 00000000001112222211111000000 00 002346779999999743 2333444333323446
Q ss_pred cEEEEEeCCh-HHHh-hcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCCh-HHHHHHHHHHcCCCchHHHHHhh
Q 037416 158 SRIIITTRNK-QVLR-NWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGY-EELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 158 ~~ilitsr~~-~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~-~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
+.+|++|... .+.+ ..+....+++++++.++..+++...+...+.. .. ++.++.|++.++|++.-+..+..
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6777777643 2221 22344789999999999999998776432211 22 46788999999999987654443
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.97 E-value=2.5e-08 Score=89.22 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=107.7
Q ss_pred CCCCCCCcccccchHHHHHHHhc----------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc-
Q 037416 23 PRDNKNQLVGVESTVDEIESLLG----------VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE- 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~----------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~- 91 (362)
|+..-+.++|.+...+.|.+++. ......+.++|+|++|+|||+||+.+++.....| +.+. ....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHHHh
Confidence 44445679999999999998772 1222356799999999999999999999864332 1122 1110
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh-------------hhHhhcc---CCCCC
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ-------------LESLIGS---LDRLT 155 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~-------------~~~l~~~---~~~~~ 155 (362)
+..........+.+ +.......+.+|+||+++.... ...++.. +....
T Consensus 89 ~~~~g~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 89 SKWMGESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp TTTGGGHHHHHHHH----------------HHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred hcccchHHHHHHHH----------------HHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 00000011111111 1122234678999999963311 2222222 11223
Q ss_pred CCcEEEEEeCChH-----HHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCC-chHHHHHh
Q 037416 156 PVSRIIITTRNKQ-----VLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGV-PLALNVLG 229 (362)
Q Consensus 156 ~~~~ilitsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~ 229 (362)
.+..+|.||.... +.. .....+.++..+.++..+++...+.... ....+...+.|++.+.|+ +..|..++
T Consensus 153 ~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4455665665432 222 2345788899999999999988774322 122356788999999884 55566555
Q ss_pred hh
Q 037416 230 CF 231 (362)
Q Consensus 230 ~~ 231 (362)
..
T Consensus 229 ~~ 230 (322)
T 3eie_A 229 KD 230 (322)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.95 E-value=2.9e-08 Score=86.64 Aligned_cols=170 Identities=16% Similarity=0.077 Sum_probs=94.6
Q ss_pred CCCcccccchHHHHHHH-------hcc-CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCch
Q 037416 27 KNQLVGVESTVDEIESL-------LGV-ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGL 98 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~-------l~~-~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (362)
...++|++..++.+... +.. .....+.++|+|++|+|||+||+.+++.....| +.+.+..... ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~--g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI--GFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT--TCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc--CCch
Confidence 34689999887777662 211 244577899999999999999999999753221 1122111000 1111
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc------------hhhhHhhccCCC---CCCCcEEEEE
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF------------NQLESLIGSLDR---LTPVSRIIIT 163 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~------------~~~~~l~~~~~~---~~~~~~ilit 163 (362)
......+. ..+.......+.+|+||+++.. ..+..+...+.. ......+|.|
T Consensus 107 ~~~~~~~~-------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t 173 (272)
T 1d2n_A 107 TAKCQAMK-------------KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT 173 (272)
T ss_dssp HHHHHHHH-------------HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE
T ss_pred HHHHHHHH-------------HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe
Confidence 11101100 0122223356889999998532 112333333322 2233446667
Q ss_pred eCChHHHhh---cC-CCceEEcCCCCH-HHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCC
Q 037416 164 TRNKQVLRN---WG-VSKIYEMQALEY-HHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGV 221 (362)
Q Consensus 164 sr~~~~~~~---~~-~~~~~~l~~l~~-~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 221 (362)
|........ .+ ....+.+++++. ++...++.... ...++....+++.+.|.
T Consensus 174 tn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-------~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 174 TSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-------NFKDKERTTIAQQVKGK 229 (272)
T ss_dssp ESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-------CSCHHHHHHHHHHHTTS
T ss_pred cCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-------CCCHHHHHHHHHHhcCC
Confidence 776644333 11 245788999988 66666655421 12356788899999884
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.93 E-value=7.1e-09 Score=92.22 Aligned_cols=166 Identities=15% Similarity=0.130 Sum_probs=95.4
Q ss_pred CcccccchHHHHHHHhccC-------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcc----cceeeeccccc
Q 037416 29 QLVGVESTVDEIESLLGVE-------------SKGVYALGIWGISGIGKTAIARAIFHKISGDFE----CSCFLENVREE 91 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~-------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~ 91 (362)
.++|.+...+.+.+++... ......++|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 3899999999988765421 234557899999999999999999988643211 122222 1111
Q ss_pred -ccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc-----------hhhhHhhccCCCCCCCcE
Q 037416 92 -SQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF-----------NQLESLIGSLDRLTPVSR 159 (362)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~~ 159 (362)
.......... ...+.... .+.+|+||+++.. .....+...+.....+..
T Consensus 111 ~~~~~g~~~~~-----------------~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 171 (309)
T 3syl_A 111 VGQYIGHTAPK-----------------TKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLV 171 (309)
T ss_dssp CCSSTTCHHHH-----------------HHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCE
T ss_pred hhhcccccHHH-----------------HHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEE
Confidence 0000000000 01111111 2459999999633 233444444433345667
Q ss_pred EEEEeCChHH----------HhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHc
Q 037416 160 IIITTRNKQV----------LRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYA 218 (362)
Q Consensus 160 ilitsr~~~~----------~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~ 218 (362)
+|+++..... ... ....+.+++++.++..+++...+..... ...++..+.+.+.+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~~~~~--~~~~~~~~~l~~~~ 236 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLDDQNY--QMTPEAETALRAYI 236 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Confidence 7777764321 122 2267999999999999999887744321 12345556666553
No 34
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.93 E-value=9e-09 Score=96.03 Aligned_cols=184 Identities=11% Similarity=0.125 Sum_probs=106.3
Q ss_pred CCcc-cccchH--HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc-cc-ceeeecccccccCCCchHHHH
Q 037416 28 NQLV-GVESTV--DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF-EC-SCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 28 ~~~v-GR~~el--~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 102 (362)
+.|+ |....+ ..+..+...... ...++|+|++|+|||||++.+++.+...+ .. .+++. . ..+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~----------~~~~ 172 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S----------EKFL 172 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-H----------HHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H----------HHHH
Confidence 3455 755544 233443332222 66799999999999999999999875443 22 23332 1 1222
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----hhhHhhccCCC-CCCCcEEEEEeCCh---------H
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----QLESLIGSLDR-LTPVSRIIITTRNK---------Q 168 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~ilitsr~~---------~ 168 (362)
..+...+... ....+.......+.+|++||++... ..+.+...+.. ...+..+|+||... .
T Consensus 173 ~~~~~~~~~~-----~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 173 NDLVDSMKEG-----KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHHHHHcc-----cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 2333322221 1233444444367799999995322 22333332211 12456788887652 2
Q ss_pred HHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 169 VLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 169 ~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
+...+.....+.+++++.++..+++...+...+. ...++..+.|+..++|++--+..+..
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~--~i~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC--CCCTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 2232333457889999999999999887643221 12235688899999999987654443
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.92 E-value=5.6e-08 Score=89.38 Aligned_cols=187 Identities=14% Similarity=0.066 Sum_probs=103.5
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
++..-+.++|.+..++.|.+++.. .....+.++|+|++|+|||+||+.++...... ++..++....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhh
Confidence 334445699999999999987731 11234679999999999999999999875422 2222111110
Q ss_pred c-CCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhhHhhccC----CCC
Q 037416 93 Q-RPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLESLIGSL----DRL 154 (362)
Q Consensus 93 ~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~----~~~ 154 (362)
. ...........+ +.......+.+|+||+++... ....++..+ ...
T Consensus 186 ~~~~g~~~~~~~~~----------------~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 SKYVGEGEKLVRAL----------------FAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ------CHHHHHHH----------------HHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred ccccchHHHHHHHH----------------HHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 0 000001111111 111122356799999995430 011222111 111
Q ss_pred CCCcEEEEEeCChHHH-hh-c-CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch-HHHHHhh
Q 037416 155 TPVSRIIITTRNKQVL-RN-W-GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL-ALNVLGC 230 (362)
Q Consensus 155 ~~~~~ilitsr~~~~~-~~-~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-~i~~~~~ 230 (362)
.....||.|+...... .. . .....+.++..+.++..+++...+..... ...+..+..++..+.|..- .|..++.
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2344566566543111 11 1 23356889999999999999877643222 2345678889999988655 5655544
Q ss_pred h
Q 037416 231 F 231 (362)
Q Consensus 231 ~ 231 (362)
.
T Consensus 328 ~ 328 (389)
T 3vfd_A 328 D 328 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 36
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.91 E-value=8.7e-08 Score=84.64 Aligned_cols=198 Identities=19% Similarity=0.154 Sum_probs=109.9
Q ss_pred HHHHHHHhhhhccCCCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 9 VVNHILKRLDEVFQPRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 9 i~~~~~~~~~~~~~~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
|++.++..+-.. .++..-+.++|.+..++.|.+++.. .....+.++|+|++|+|||++|+.++..+...
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEIVEG-GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTTBCC-SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhccC-CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 445554443332 1444456799999999999887632 11235678999999999999999999976432
Q ss_pred cccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhh
Q 037416 79 FECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLE 145 (362)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~ 145 (362)
| +.+.+..-............+.+. .......+.+|+||+++... ...
T Consensus 82 ~---~~i~~~~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 142 (297)
T 3b9p_A 82 F---LNISAASLTSKYVGDGEKLVRALF----------------AVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKT 142 (297)
T ss_dssp E---EEEESTTTSSSSCSCHHHHHHHHH----------------HHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHH
T ss_pred e---EEeeHHHHhhcccchHHHHHHHHH----------------HHHHHcCCcEEEeccHHHhccccccCcchHHHHHHH
Confidence 2 112211101110111111111111 11222457899999995321 011
Q ss_pred Hhhc---cCCCC--CCCcEEEEEeCChH-----HHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHH
Q 037416 146 SLIG---SLDRL--TPVSRIIITTRNKQ-----VLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAM 215 (362)
Q Consensus 146 ~l~~---~~~~~--~~~~~ilitsr~~~-----~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 215 (362)
.++. ..... ..+..+|.+|.... +... ....+.++..+.++...++...+..... ...+...+.++
T Consensus 143 ~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~la 218 (297)
T 3b9p_A 143 EFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS--PLDTEALRRLA 218 (297)
T ss_dssp HHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC--CSCHHHHHHHH
T ss_pred HHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHH
Confidence 1221 11111 13445666665432 2222 3356778888888888888776633221 13356788899
Q ss_pred HHcCCCch-HHHHHhh
Q 037416 216 NYAQGVPL-ALNVLGC 230 (362)
Q Consensus 216 ~~~~G~Pl-~i~~~~~ 230 (362)
+.+.|++- .+..++.
T Consensus 219 ~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 219 KITDGYSGSDLTALAK 234 (297)
T ss_dssp HHTTTCCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHH
Confidence 99999886 5655554
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.91 E-value=1.4e-07 Score=84.21 Aligned_cols=187 Identities=13% Similarity=0.100 Sum_probs=105.9
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
|+..-+.++|-+...+.|.+.+.- .....+.++|+||+|+|||+||+.++..+... ..+.+....-.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhHHHHh
Confidence 334445688999888888876531 11234679999999999999999999986221 111122111000
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhhHhhccC---CCCCC
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLESLIGSL---DRLTP 156 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~---~~~~~ 156 (362)
..........+.+. .......+.+|+||+++... ....++..+ .....
T Consensus 85 ~~~g~~~~~~~~lf----------------~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 KWLGESEKLVKNLF----------------QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp SSCCSCHHHHHHHH----------------HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred hhhhHHHHHHHHHH----------------HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 00011111111111 11223467899999996441 112222221 11234
Q ss_pred CcEEEEEeCCh-----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc-hHHHHHhh
Q 037416 157 VSRIIITTRNK-----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP-LALNVLGC 230 (362)
Q Consensus 157 ~~~ilitsr~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-l~i~~~~~ 230 (362)
+..+|.+|..+ .+.. .....+.++..+.++..+++...+..... ...+...+.|++.+.|+. ..|..++.
T Consensus 149 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN--SLTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB--CCCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44555555433 2222 23467889999999999999887643221 123567889999999874 44666665
Q ss_pred h
Q 037416 231 F 231 (362)
Q Consensus 231 ~ 231 (362)
.
T Consensus 225 ~ 225 (322)
T 1xwi_A 225 D 225 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.90 E-value=2.1e-08 Score=89.87 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQ 103 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (362)
|..-+.++|++..++.+.+++..+ ..++.++++|++|+|||++++.+++.+... .+.+. . + .... ...+
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~--~~~~-~~i~ 90 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---S--DCKI-DFVR 90 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---T--TCCH-HHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---c--ccCH-HHHH
Confidence 444567999999999999999732 234678888999999999999999987322 22222 1 1 1122 2222
Q ss_pred HHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch---hhhHhhccCCCCCCCcEEEEEeCChHH-Hhh-cCCCce
Q 037416 104 KLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN---QLESLIGSLDRLTPVSRIIITTRNKQV-LRN-WGVSKI 178 (362)
Q Consensus 104 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~---~~~~l~~~~~~~~~~~~ilitsr~~~~-~~~-~~~~~~ 178 (362)
..+.......+ ..+.+.++++|+++... ....+...+......+.+|+|+....- .+. .+....
T Consensus 91 ~~~~~~~~~~~-----------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 91 GPLTNFASAAS-----------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp THHHHHHHBCC-----------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHHHHHHhhcc-----------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 22222111111 12367899999998654 344444333322345678887765421 111 112357
Q ss_pred EEcCCCCHHHHHHHHH-------HhhhcCCCCCCChH-HHHHHHHHHcCCCchHHHH
Q 037416 179 YEMQALEYHHALELFC-------RHAFKQNHPDVGYE-ELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 179 ~~l~~l~~~e~~~ll~-------~~~~~~~~~~~~~~-~~~~~i~~~~~G~Pl~i~~ 227 (362)
+.+++++.++..+++. ..+...+. ...+ +..+.+++.++|++..+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHHHH
Confidence 9999999888543332 22211111 1223 7788899999999886543
No 39
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.89 E-value=1.9e-08 Score=90.14 Aligned_cols=184 Identities=13% Similarity=0.130 Sum_probs=103.3
Q ss_pred CCCCCCCcc-cccchH--HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchH
Q 037416 23 PRDNKNQLV-GVESTV--DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLA 99 (362)
Q Consensus 23 ~~~~~~~~v-GR~~el--~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (362)
+...-+.|+ |..... ..+..+..........++|+|++|+|||+|++.+++.+.......+++. . .
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~----------~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A----------D 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H----------H
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H----------H
Confidence 333445565 654433 3345555433324567899999999999999999998754322233333 1 1
Q ss_pred HHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----hhhHhhccCCC-CCCCcEEEEEeCCh-------
Q 037416 100 CLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----QLESLIGSLDR-LTPVSRIIITTRNK------- 167 (362)
Q Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~ilitsr~~------- 167 (362)
.+...+....... ....+..... .+.++++|+++... ....+...+.. ...+..+++|+...
T Consensus 75 ~~~~~~~~~~~~~-----~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l 148 (324)
T 1l8q_A 75 DFAQAMVEHLKKG-----TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGV 148 (324)
T ss_dssp HHHHHHHHHHHHT-----CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTS
T ss_pred HHHHHHHHHHHcC-----cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHh
Confidence 1222222222111 1222232222 36799999995332 22223222211 12345677777532
Q ss_pred --HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 168 --QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 168 --~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
.+...+.....+.+++ +.++..+++...+..... ...++..+.|++.+ |++--+..
T Consensus 149 ~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 149 SDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp CHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHH
T ss_pred hhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHH
Confidence 2222223346789999 999999999887743322 23467788999999 88875543
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.87 E-value=1.1e-07 Score=86.08 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=105.6
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc-
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE- 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~- 91 (362)
++..-+.++|.+...+.|.+.+.. .....+.++|+|++|+|||+||+.++..+...| +.+. ....
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~l~ 121 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSDLV 121 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHHHh
Confidence 344455699999999999987631 112245689999999999999999999874322 1111 1110
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh-------------hhHhhccC---CCCC
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ-------------LESLIGSL---DRLT 155 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~-------------~~~l~~~~---~~~~ 155 (362)
+..........+.+ +.......+.+|+||+++.... ...++..+ ....
T Consensus 122 ~~~~g~~~~~~~~~----------------f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 122 SKWMGESEKLVKQL----------------FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp SCC---CHHHHHHH----------------HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred hhhcchHHHHHHHH----------------HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 00000001111111 1112234678999999964321 22232221 1123
Q ss_pred CCcEEEEEeCCh-----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCC-chHHHHHh
Q 037416 156 PVSRIIITTRNK-----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGV-PLALNVLG 229 (362)
Q Consensus 156 ~~~~ilitsr~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~ 229 (362)
.+..||.||..+ .+.. .....+.++..+.++..+++...+..... ...+...+.|++.+.|+ +.-|..++
T Consensus 186 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445566566543 1222 34467889999999999999887743321 12356788999999984 54566665
Q ss_pred hh
Q 037416 230 CF 231 (362)
Q Consensus 230 ~~ 231 (362)
..
T Consensus 262 ~~ 263 (355)
T 2qp9_X 262 KD 263 (355)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.84 E-value=2.4e-07 Score=83.29 Aligned_cols=263 Identities=14% Similarity=0.142 Sum_probs=143.3
Q ss_pred CCCCCCcccccchHHHHHHHhccC---CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVE---SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~---~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
|..-+.++|++..++.+...+..+ +.....++|+||+|+|||||++.++..+...+. .. .........+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~----~~----sg~~~~~~~~ 92 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH----VT----SGPVLVKQGD 92 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE----EE----ETTTCCSHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EE----echHhcCHHH
Confidence 334456899998888888777532 223467899999999999999999998743221 11 0000111111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCC------------------CCCcEE
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRL------------------TPVSRI 160 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~------------------~~~~~i 160 (362)
+. . +...+ .++.++++|+++.. ...+.+...+... .+...+
T Consensus 93 l~-~-----------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 93 MA-A-----------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp HH-H-----------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred HH-H-----------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 11 0 11111 23447788888532 2222222111000 011223
Q ss_pred E-EEeCChHHHhhc--CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhhhhcC---
Q 037416 161 I-ITTRNKQVLRNW--GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGCFLYE--- 234 (362)
Q Consensus 161 l-itsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~~l~~--- 234 (362)
+ .|++...+...+ .......+++.+.++..+++........ ....++.+..|+..+.|.|..+..+...+..
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLT 231 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 3 233433222222 1234688999999999999988764322 1244677899999999999876555443211
Q ss_pred ------CCHHHHHHHHHHHhccCCccHHHHHhccccCCChhhhhhhhhhh-cc-CCCccHHHHHHHHHHcCCCchhhHH-
Q 037416 235 ------REKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVA-CF-FRGEHVNLVMKFLNASGFYPEIGIR- 305 (362)
Q Consensus 235 ------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~~~l~- 305 (362)
-+.......+..+ ...-..++...+.++..++ .| ...+....+....+.+....++..+
T Consensus 232 ~~~~~~It~~~v~~al~~~------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~ 299 (334)
T 1in4_A 232 VVKADRINTDIVLKTMEVL------------NIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEP 299 (334)
T ss_dssp HHTCSSBCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHH
T ss_pred HcCCCCcCHHHHHHHHHHh------------CCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHH
Confidence 1222222222221 1122345555556665444 33 2336777777766543222233334
Q ss_pred HHhhccceEEccCCcEEecHHH
Q 037416 306 VLVDKSLIAIDSHKKITMLDLL 327 (362)
Q Consensus 306 ~L~~~~Li~~~~~~~~~~H~li 327 (362)
.|...|+++....|++....-.
T Consensus 300 ~l~~~g~i~~~~~gr~~~~~~~ 321 (334)
T 1in4_A 300 YLLQAGFLARTPRGRIVTEKAY 321 (334)
T ss_dssp HHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHcCCeecccccHHhhHHHH
Confidence 7899999999888876544433
No 42
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.82 E-value=1.7e-07 Score=84.25 Aligned_cols=179 Identities=14% Similarity=0.116 Sum_probs=102.7
Q ss_pred cchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHH----
Q 037416 34 ESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNL---- 109 (362)
Q Consensus 34 ~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 109 (362)
+...+.|...+.. +.-.+.++++|++|+|||++|+.+++.+....... ...+.. . ..++.+....
T Consensus 8 ~~~~~~l~~~i~~-~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~--------c-~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 8 RPDFEKLVASYQA-GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGH--------C-RGCQLMQAGTHPDY 76 (334)
T ss_dssp HHHHHHHHHHHHT-TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSC--------S-HHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHHc-CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCC--------C-HHHHHHhcCCCCCE
Confidence 3445566666652 22356799999999999999999999864322100 000000 0 0000000000
Q ss_pred ---hcC--CC--CCCchHHHHHhh-----CCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCCh-HHHhh-c
Q 037416 110 ---LKD--KN--VIPYIDLNFRRL-----SRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNK-QVLRN-W 173 (362)
Q Consensus 110 ---~~~--~~--~~~~~~~~~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~-~ 173 (362)
... .. ....+..+.+.+ .+++-++|+|+++.. .....++..+..-..++.+|+++... .+.+. .
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 000 00 001111222222 245679999999743 34455555554444566777776654 22222 2
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHHHhh
Q 037416 174 GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNVLGC 230 (362)
Q Consensus 174 ~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~~~~ 230 (362)
+....+.+++++.++..+++.... ...++.+..++..++|.|..+..+..
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 445689999999999999998774 22356678899999999987755544
No 43
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=9.6e-08 Score=86.14 Aligned_cols=185 Identities=12% Similarity=0.189 Sum_probs=108.0
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecccccccCCCchHHHH
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENVREESQRPGGLACLR 102 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 102 (362)
|..-..++|.+..++.|..++..+ ..+.++++||+|+||||+++.++..+... +...+.-.+... ......+
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~~~~~i- 93 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DRGIDVV- 93 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CCSHHHH-
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cccHHHH-
Confidence 334455889999999999988743 32338999999999999999999986432 221111111110 1122222
Q ss_pred HHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCCCCCCcEEEEEeCChH-HHh-hcCCCce
Q 037416 103 QKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDRLTPVSRIIITTRNKQ-VLR-NWGVSKI 178 (362)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~ilitsr~~~-~~~-~~~~~~~ 178 (362)
+.....+..... ...+.+-++|+|+++.. .....+...+......+.+++++.... +.+ ..+....
T Consensus 94 r~~i~~~~~~~~----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 94 RNQIKDFASTRQ----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HTHHHHHHHBCC----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHHHHhhcc----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 122222211110 01234678999999532 333444333332335566777665431 111 1233457
Q ss_pred EEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 179 YEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 179 ~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
+.+.+++.++..+.+...+..... ...+...+.+++.++|.+.-+..
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999999988876633221 13356788899999999985433
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.78 E-value=2.2e-07 Score=86.80 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=107.4
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
|+..-+.++|.+...+.|.+.+.. .....+.++|+||+|+|||+||+.++..+... .++..+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~---~~~~v~~~--- 202 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS---TFFSISSS--- 202 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS---EEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC---CEEEEeHH---
Confidence 444446689999999999887621 11234679999999999999999999986211 11111111
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHH-hhCCceEEEEEeCCCCch-------------hhhHhhccCCC---CC
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFR-RLSRMKVLIVFDDVTCFN-------------QLESLIGSLDR---LT 155 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~---~~ 155 (362)
. +...+ .. .....+..+.. .....+.+|+||+++... ....++..+.. ..
T Consensus 203 ----~---l~~~~----~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 203 ----D---LVSKW----LG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp ----------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred ----H---HHhhh----cc--hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 0 00000 00 01122222222 223467899999996441 12334333322 13
Q ss_pred CCcEEEEEeCChHHH-hh-c-CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCC-chHHHHHhhh
Q 037416 156 PVSRIIITTRNKQVL-RN-W-GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGV-PLALNVLGCF 231 (362)
Q Consensus 156 ~~~~ilitsr~~~~~-~~-~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~~~ 231 (362)
.+..||.||..+... +. . .....+.++..+.++...++...+..... ...+..++.|+..+.|+ +..|..++..
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~~ 347 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIVRD 347 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 445566666543211 11 1 23357888888999999999877643221 12356788999999985 4456665553
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.7e-07 Score=82.85 Aligned_cols=175 Identities=19% Similarity=0.235 Sum_probs=100.7
Q ss_pred CCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 28 NQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
+.+.|-+...++|.+.+.- +-..++-|++|||+|+|||.||+.++..+...|- .+....-.+....
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~---~v~~s~l~sk~vG 224 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI---RVSGAELVQKYIG 224 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE---EEEGGGGSCSSTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce---EEEhHHhhccccc
Confidence 4578888888888775531 2233567999999999999999999998754431 1111111111011
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCC--CCCCCc
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLD--RLTPVS 158 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~--~~~~~~ 158 (362)
......+.++.. .-...|++|+||+++... .+..++..+. ....+.
T Consensus 225 ese~~vr~lF~~----------------Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V 288 (405)
T 4b4t_J 225 EGSRMVRELFVM----------------AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNI 288 (405)
T ss_dssp HHHHHHHHHHHH----------------HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCE
T ss_pred hHHHHHHHHHHH----------------HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCe
Confidence 122222222222 223458999999995331 1222332221 112344
Q ss_pred EEEEEeCCh-----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 159 RIIITTRNK-----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 159 ~ilitsr~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
.+|.||..+ .+.........+.++.-+.++..++|...+........ -..+.|++.|.|+.-|
T Consensus 289 ~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~SGA 356 (405)
T 4b4t_J 289 KIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCSGA 356 (405)
T ss_dssp EEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCCHH
T ss_pred EEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCCHH
Confidence 455555433 22222235568999999999999999877644332221 1267889999987655
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.73 E-value=1.7e-07 Score=88.16 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=92.8
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCCc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPGG 97 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 97 (362)
|..-++++||+.++..+.+.+.. .....++|+|++|+|||++|+.++..+.... +..++..+..
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r--~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred cCCCCCccCcHHHHHHHHHHHhc--cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 44456799999999999999863 3344578999999999999999999874422 1222221111
Q ss_pred hHHHHHHHHHHHhcCCCCCCchHHH-HHhhCCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhh----
Q 037416 98 LACLRQKLLSNLLKDKNVIPYIDLN-FRRLSRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN---- 172 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~---- 172 (362)
... .......+..+ .......+.++++| ...+....+...+. ....++|.++....+...
T Consensus 246 ---------~~~--~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~ 310 (468)
T 3pxg_A 246 ---------TKY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (468)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---------ccc--cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcC
Confidence 000 00011222222 22233467899999 22222233333333 234556666554431110
Q ss_pred ---cCCCceEEcCCCCHHHHHHHHHHhhhcC--CCCCCChHHHHHHHHHHcC
Q 037416 173 ---WGVSKIYEMQALEYHHALELFCRHAFKQ--NHPDVGYEELSSKAMNYAQ 219 (362)
Q Consensus 173 ---~~~~~~~~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~~ 219 (362)
......+.+++.+.++..+++......- .......++....++..+.
T Consensus 311 ~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~ 362 (468)
T 3pxg_A 311 AALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (468)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred HHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 1233479999999999999998765221 1112233455555555543
No 47
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.69 E-value=3.3e-08 Score=77.57 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=38.1
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++|++..++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 589999999999987765334445689999999999999999988653
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.68 E-value=3.2e-08 Score=80.76 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=42.2
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.-+.++||+.+++.+.+.+.. ...+.++|+|++|+|||++++.+++.+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445699999999999999863 34566899999999999999999998744
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.68 E-value=8.2e-08 Score=97.06 Aligned_cols=178 Identities=11% Similarity=0.049 Sum_probs=92.7
Q ss_pred CCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCCch
Q 037416 25 DNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPGGL 98 (362)
Q Consensus 25 ~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 98 (362)
..-++++||+.++.++.+.+.. ...+.++|+|++|+|||++++.++..+.... +..++..+...... ...
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-g~~- 242 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-GAK- 242 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCCcccCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-cCc-
Confidence 3446799999999999998863 3344578999999999999999999874321 22232221111100 000
Q ss_pred HHHHHHHHHHHhcCCCCCCchHHHHHhh-C-CceEEEEEeCCCCch----------hhhHhhccCCCCCCCcEEEEEeCC
Q 037416 99 ACLRQKLLSNLLKDKNVIPYIDLNFRRL-S-RMKVLIVFDDVTCFN----------QLESLIGSLDRLTPVSRIIITTRN 166 (362)
Q Consensus 99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~-~~~~llvlDd~~~~~----------~~~~l~~~~~~~~~~~~ilitsr~ 166 (362)
........+..+...+ . +++.++++|+++... ....+...+. .....+|.++..
T Consensus 243 ------------~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~ 308 (854)
T 1qvr_A 243 ------------YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECH
T ss_pred ------------cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCc
Confidence 0000001111122221 2 367899999996432 1112222222 123446665554
Q ss_pred hHHHh-----h-cCCCceEEcCCCCHHHHHHHHHHhhhcC--CCCCCChHHHHHHHHHHcCC
Q 037416 167 KQVLR-----N-WGVSKIYEMQALEYHHALELFCRHAFKQ--NHPDVGYEELSSKAMNYAQG 220 (362)
Q Consensus 167 ~~~~~-----~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~~G 220 (362)
..... . ......+.+++++.++..+++....... .......++....+++.++|
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r 370 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR 370 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence 43211 1 1223468899999999999997543211 11112234556666666543
No 50
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.67 E-value=2.1e-07 Score=87.68 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=101.5
Q ss_pred CCcccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 28 NQLVGVESTVDEIESLLGVE-----------SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
+.++|.+..+++|.+++... ....+.++|+|++|+|||++|+.+++..... .+.+.+..-.+....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLINGPEIMSKLAG 280 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE---EEEEEHHHHHTSCTT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC---EEEEEchHhhhhhcc
Confidence 45899999999998877532 3445679999999999999999999876322 122221111111000
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc-------------hhhhHhhccCC--CCCCCcEEE
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF-------------NQLESLIGSLD--RLTPVSRII 161 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~--~~~~~~~il 161 (362)
....... ..+.....+.+.+|+||+++.. .....++..+. .......+|
T Consensus 281 ~~~~~~~----------------~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vI 344 (489)
T 3hu3_A 281 ESESNLR----------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (489)
T ss_dssp HHHHHHH----------------HHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred hhHHHHH----------------HHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEE
Confidence 0111111 1122333456789999999311 11222322221 123345566
Q ss_pred EEeCChHH-Hhh----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCC-chHHHHHhh
Q 037416 162 ITTRNKQV-LRN----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGV-PLALNVLGC 230 (362)
Q Consensus 162 itsr~~~~-~~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Pl~i~~~~~ 230 (362)
.+|..+.. ... ......+.+...+.++..+++..++....... ......++..+.|+ +..|..++.
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~---~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT---TCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc---hhhHHHHHHHccCCcHHHHHHHHH
Confidence 66654422 111 12345788999999999999987764332221 12256777788775 444544433
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.65 E-value=1.3e-07 Score=83.88 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=39.3
Q ss_pred CCcccccchHHHHHHHhcc------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGV------------ESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.++|++..++.+...+.. .......++|+|++|+|||++|+.+++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999887753 012345688999999999999999999874
No 52
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=9.8e-07 Score=81.30 Aligned_cols=175 Identities=19% Similarity=0.261 Sum_probs=99.7
Q ss_pred CCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccc-cccC
Q 037416 27 KNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVRE-ESQR 94 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (362)
-+.+.|-+...++|.+.+.- +-..++-|++|||+|+|||.||+.++..+...|- .+. ... .+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~---~v~-~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI---FSP-ASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-hhhhcccc
Confidence 34578888888888775531 2233678999999999999999999998754321 122 111 1110
Q ss_pred CCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCC--CCCC
Q 037416 95 PGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLD--RLTP 156 (362)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~--~~~~ 156 (362)
........+.++. ..-...|++|++|+++... .+..++..+. ....
T Consensus 256 ~Gese~~ir~~F~----------------~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 256 IGESARIIREMFA----------------YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SSHHHHHHHHHHH----------------HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred chHHHHHHHHHHH----------------HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 1111222222222 2223468999999995321 0222332221 1123
Q ss_pred CcEEEEEeCChHHH-hhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 157 VSRIIITTRNKQVL-RNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 157 ~~~ilitsr~~~~~-~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
+..||.||..+... +.+ .....+.++.-+.++..++|..++........ -..+.+++.|.|+.-+
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d---~dl~~lA~~t~G~sGA 389 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGE---FDFEAAVKMSDGFNGA 389 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSC---CCHHHHHHTCCSCCHH
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHhCCCCCHH
Confidence 44566666543222 111 13457888888999999999877654332221 1267888999887654
No 53
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.64 E-value=5.2e-07 Score=77.89 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=97.5
Q ss_pred CCCCCCCcccccchHHHHHHHhcc---C-------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV---E-------SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~---~-------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
++..-+.++|.+...+++.+.+.. . ....+.++|+|++|+|||+||+.++..+...+ +.+. .....
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~ 82 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFV 82 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSST
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHH
Confidence 344455689999888877665431 0 11244589999999999999999998764332 2222 11110
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCc----------------hhhhHhhccCCC--
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCF----------------NQLESLIGSLDR-- 153 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~-- 153 (362)
..... .....+.. +.......+.++++|+++.. .....++..+..
T Consensus 83 ~~~~~----------------~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 83 EMFVG----------------VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp TSCCC----------------CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHhhh----------------hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00000 00011111 22233345789999998311 111222222111
Q ss_pred CCCCcEEEEEeCChH-HHhhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCC-CchHHHH
Q 037416 154 LTPVSRIIITTRNKQ-VLRNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQG-VPLALNV 227 (362)
Q Consensus 154 ~~~~~~ilitsr~~~-~~~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Pl~i~~ 227 (362)
...+..+|.||.... +.... .....+.++..+.++..+++...+......+. .....++..+.| ++.-|..
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~---~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD---IDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc---ccHHHHHHHcCCCCHHHHHH
Confidence 123445666665442 21111 12356788888888888888776533222221 224567778888 6766654
Q ss_pred Hh
Q 037416 228 LG 229 (362)
Q Consensus 228 ~~ 229 (362)
++
T Consensus 224 l~ 225 (257)
T 1lv7_A 224 LV 225 (257)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.63 E-value=7.6e-07 Score=78.76 Aligned_cols=179 Identities=13% Similarity=0.161 Sum_probs=102.9
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
|+..-+.++|.+...++|.+++.. +-...+.++|+|++|+|||+||+.++..+...| +.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~----- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK----- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-----
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-----
Confidence 344445689999999988887642 123456789999999999999999999864221 1111
Q ss_pred ccCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCchh----------------hhHhhccCCC-
Q 037416 92 SQRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFNQ----------------LESLIGSLDR- 153 (362)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~~----------------~~~l~~~~~~- 153 (362)
..++...+ .... ...+.. +.......+.+++||+++.... ...++..+..
T Consensus 82 ------~~~l~~~~----~g~~--~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ------GPELLTMW----FGES--EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ------HHHHHHHH----HTTC--TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ------hHHHHhhh----cCch--HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 11222111 1111 112222 2333335689999999963211 1233322211
Q ss_pred -CCCCcEEEEEeCChHHH-hh-c---CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 154 -LTPVSRIIITTRNKQVL-RN-W---GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 154 -~~~~~~ilitsr~~~~~-~~-~---~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
...+..||.||...... +. . .....+.++..+.++..+++...+........ ...+.++..+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~---~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD---VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCcc---chHHHHHHHcCCCCHH
Confidence 12345666666544222 11 1 23457889999999999998877644332211 1245677788888765
No 55
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.7e-06 Score=77.41 Aligned_cols=176 Identities=15% Similarity=0.193 Sum_probs=99.7
Q ss_pred CCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCC
Q 037416 27 KNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRP 95 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (362)
=+.+.|-+...++|.+.+.- +-..++-|+++||+|+|||.||+.++..+...|- .+....-.+...
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs~s~L~sk~v 284 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI---RVIGSELVQKYV 284 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEEGGGGCCCSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEEhHHhhcccC
Confidence 34578888888888775421 2234678999999999999999999998754432 111111111101
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCC--CCCCC
Q 037416 96 GGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLD--RLTPV 157 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~--~~~~~ 157 (362)
.......+.++.. .-...|++|++|+++... .+..++..+. ....+
T Consensus 285 Gesek~ir~lF~~----------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 285 GEGARMVRELFEM----------------ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp SHHHHHHHHHHHH----------------HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred CHHHHHHHHHHHH----------------HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 1122222222222 223468999999995321 0112222211 11233
Q ss_pred cEEEEEeCCh-----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 158 SRIIITTRNK-----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 158 ~~ilitsr~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
..+|.||... .+.........+.++..+.++..++|..++........ -..+.|++.|.|+--+
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d---vdl~~LA~~T~GfSGA 417 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG---IRWELISRLCPNSTGA 417 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHHCCSCCHH
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHCCCCCHH
Confidence 4455555432 22222235568889999999999999877644332221 1267788999887544
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.60 E-value=4.3e-07 Score=80.63 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=40.6
Q ss_pred CCcccccchHHHHHHHhccCC-------CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVES-------KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+.++|.+..++.+...+.... .....++|+|++|+|||++|+.++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 348999999999988776421 113579999999999999999999987544
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.56 E-value=1.8e-06 Score=76.43 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=39.9
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.++|++..+.++.+.+.........|+|+|++|+|||++|+.+++...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 4589999999999887765334455688999999999999999998653
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.7e-06 Score=79.57 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=93.9
Q ss_pred CCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCC
Q 037416 27 KNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRP 95 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (362)
-+.+.|-+...+.|.+.+.- +-..++-+++|||+|+|||.||+.++..+...|- .+....-.+...
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~---~v~~~~l~~~~~ 247 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI---RVNGSEFVHKYL 247 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEE---EEEGGGTCCSSC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE---EEecchhhcccc
Confidence 34578888888888775531 2234677999999999999999999998754321 121111111101
Q ss_pred CchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCC--CCCCC
Q 037416 96 GGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLD--RLTPV 157 (362)
Q Consensus 96 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~--~~~~~ 157 (362)
.......+.++.. .-...|+++++|+++... .+..++..+. ....+
T Consensus 248 Ge~e~~ir~lF~~----------------A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 248 GEGPRMVRDVFRL----------------ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp SHHHHHHHHHHHH----------------HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred chhHHHHHHHHHH----------------HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 1122222222222 223458999999993110 1222322211 11234
Q ss_pred cEEEEEeCCh-----HHHhhcCCCceEEcCCC-CHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 158 SRIIITTRNK-----QVLRNWGVSKIYEMQAL-EYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 158 ~~ilitsr~~-----~~~~~~~~~~~~~l~~l-~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
..+|.||..+ .+.........+.++.+ +.++...++...+........ -..+.+++.|.|+--|
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~---~dl~~lA~~t~G~sga 381 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE---ADLDSLIIRNDSLSGA 381 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT---CCHHHHHHHTTTCCHH
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc---cCHHHHHHHCCCCCHH
Confidence 4566666433 22221123346778766 555566666655543332221 1267888899887554
No 59
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.3e-06 Score=80.33 Aligned_cols=183 Identities=16% Similarity=0.200 Sum_probs=101.7
Q ss_pred CCCCCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE 91 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~ 91 (362)
|...-+.+.|-+...++|.+.+.- +-..++-|++|||+|+|||.||+.++..+...| +.......
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhh
Confidence 333445678888888888775421 223467899999999999999999999865432 22111111
Q ss_pred -ccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc-------h---------hhhHhhccCCCC
Q 037416 92 -SQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF-------N---------QLESLIGSLDRL 154 (362)
Q Consensus 92 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~-------~---------~~~~l~~~~~~~ 154 (362)
+..........+.++.. .-...|++|++|+++.. . .+..++..+...
T Consensus 252 ~~~~vGese~~ir~lF~~----------------A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFAL----------------AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CSSCSSHHHHHHHHHHHH----------------HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hhcccchHHHHHHHHHHH----------------HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 11011122222222221 12235899999999321 0 012233322211
Q ss_pred --CCCcEEEEEeCChHHH-hhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH-HH
Q 037416 155 --TPVSRIIITTRNKQVL-RNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA-LN 226 (362)
Q Consensus 155 --~~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~-i~ 226 (362)
..+..||.||..+... +.+ .....+.++.-+.++..++|...+......... ..+.|++.|.|+--+ |.
T Consensus 316 ~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~sGADi~ 392 (434)
T 4b4t_M 316 SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEFNGAQLK 392 (434)
T ss_dssp CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSCCHHHHH
T ss_pred CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCCHHHHH
Confidence 2334455566533221 111 234578899999999999998766443322211 267889999886544 43
Q ss_pred HH
Q 037416 227 VL 228 (362)
Q Consensus 227 ~~ 228 (362)
.+
T Consensus 393 ~l 394 (434)
T 4b4t_M 393 AV 394 (434)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 60
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.51 E-value=8.6e-07 Score=76.86 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=36.9
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+.++|++..+..+.+.+.........++|+|++|+|||++|+.+++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 45899999999888766542234456889999999999999999987643
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.51 E-value=1.3e-06 Score=87.27 Aligned_cols=151 Identities=15% Similarity=0.226 Sum_probs=86.8
Q ss_pred CCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeeeccccccc---CCC
Q 037416 26 NKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLENVREESQ---RPG 96 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~---~~~ 96 (362)
.-+.++||+.+++++.+.+.. .....++|+|++|+|||++++.++..+... ....++......... ...
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~--~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCR--RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhc--cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 345699999999999998873 344567899999999999999999986432 122222221111000 000
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhh-CCceEEEEEeCCCCc--------hh--hhH-hhccCCCCCCCcEEEEEe
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRL-SRMKVLIVFDDVTCF--------NQ--LES-LIGSLDRLTPVSRIIITT 164 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~--------~~--~~~-l~~~~~~~~~~~~ilits 164 (362)
..... +..+...+ ...+.++++|+++.. .. ... +...+. .....+|.++
T Consensus 262 ~~e~~-----------------l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 262 DFEKR-----------------FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp CHHHH-----------------HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred hHHHH-----------------HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 11111 11222222 235789999999644 11 122 223322 2345666666
Q ss_pred CChHHHhhc-------CCCceEEcCCCCHHHHHHHHHHhh
Q 037416 165 RNKQVLRNW-------GVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 165 r~~~~~~~~-------~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
..+.+.... .....+.+++.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321111 122368899999999999887654
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.50 E-value=1.6e-06 Score=86.68 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=93.5
Q ss_pred CCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCc------ccceeeecccccccCCCc
Q 037416 24 RDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDF------ECSCFLENVREESQRPGG 97 (362)
Q Consensus 24 ~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 97 (362)
+..-++++||+.+++++.+.+.. ....-++|+|++|+|||++|+.+++.+.... +..++..+.
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~--~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR--RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC--SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred hCCCCCccCchHHHHHHHHHHhC--CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 34456799999999999999863 3344588999999999999999999874321 122222111
Q ss_pred hHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChHHHhh----
Q 037416 98 LACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQVLRN---- 172 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~~~~~---- 172 (362)
.... .......+.. +.......+.++++| ...+....+...+. ....++|.++....+...
T Consensus 245 --------g~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --------GTKY--RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp ------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred --------cccc--cchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 0000 0111122222 223334567899999 22222233333333 334566666654432110
Q ss_pred ---cCCCceEEcCCCCHHHHHHHHHHhhhcC--CCCCCChHHHHHHHHHHcC
Q 037416 173 ---WGVSKIYEMQALEYHHALELFCRHAFKQ--NHPDVGYEELSSKAMNYAQ 219 (362)
Q Consensus 173 ---~~~~~~~~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~~ 219 (362)
......+.+++.+.++..+++....... .......+.....+++.++
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~ 362 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSD 362 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Confidence 1123579999999999999998654221 1112233455555555543
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.49 E-value=2.1e-07 Score=80.82 Aligned_cols=179 Identities=14% Similarity=0.171 Sum_probs=94.7
Q ss_pred CCCCCCCcccccchHHHHHHHhcc----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGV----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
++..-+.++|.+...+.+.+.+.. +....+.++|+|++|+|||+||+.++..+...|- .+. .....
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~---~v~-~~~~~ 81 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF---SMG-GSSFI 81 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC---CCC-SCTTT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---Eec-hHHHH
Confidence 344456799999999998886641 1122344889999999999999999998643321 111 11000
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-----------------hhhHhhccCCCC-
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-----------------QLESLIGSLDRL- 154 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-----------------~~~~l~~~~~~~- 154 (362)
. . .. .......-..+.......+.+|+||+++... .+..++..+...
T Consensus 82 ~---~-----------~~-~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 E---M-----------FV-GLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp T---S-----------CS-SSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred H---h-----------hc-chHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 0 0 00 0000000111222223456899999995331 122333332211
Q ss_pred --CCCcEEEEEeCChHH-----HhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch
Q 037416 155 --TPVSRIIITTRNKQV-----LRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 155 --~~~~~ilitsr~~~~-----~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
.....+|.||..... .........+.++..+.++..+++...+........ ...+.++..+.|.|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~---~~~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLAND---VNLQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSS---CCTTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCc---cCHHHHHHHcCCCCH
Confidence 122456666654422 111122356788889999999999876633221111 113446666666654
No 64
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.48 E-value=5.3e-06 Score=77.56 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=96.5
Q ss_pred CCCcccccchHHHHHHHhccC----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 27 KNQLVGVESTVDEIESLLGVE----------SKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
-+.++|.+..++++.+....- ..-++-++|+||+|+|||+||+.++......| +.+. .........
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh
Confidence 345899998888877654320 11234589999999999999999999764332 1122 111111000
Q ss_pred c-hHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc----------------hhhhHhhccCCC--CCCC
Q 037416 97 G-LACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF----------------NQLESLIGSLDR--LTPV 157 (362)
Q Consensus 97 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~--~~~~ 157 (362)
. ...-.+ ..+.......+.+|+||+++.. ..+..++..+.. ...+
T Consensus 91 g~~~~~~r----------------~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 91 GVGAARVR----------------DLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp THHHHHHH----------------HHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred cccHHHHH----------------HHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 000000 1123333456899999999532 112333322210 1234
Q ss_pred cEEEEEeCChHHHh-h-c---CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch
Q 037416 158 SRIIITTRNKQVLR-N-W---GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 158 ~~ilitsr~~~~~~-~-~---~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
..||.+|..+.... . . .....+.++..+.++..+++...+........ .....++..+.|+.-
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~---v~l~~la~~t~G~sg 222 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAED---VNLEIIAKRTPGFVG 222 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCCH
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcch---hhHHHHHHhcCCCcH
Confidence 55666665543221 1 1 23347888999988888888766643322221 125668899999884
No 65
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.7e-06 Score=76.63 Aligned_cols=176 Identities=16% Similarity=0.215 Sum_probs=98.3
Q ss_pred CCCCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeeccccc-cc
Q 037416 26 NKNQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREE-SQ 93 (362)
Q Consensus 26 ~~~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (362)
.-+.+.|-+...++|.+.+.- +-..++-|++|||+|+|||.||+.++..+...|-. +. .... +.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~---v~-~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR---IV-GSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE---EE-SGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE---EE-HHHhhhc
Confidence 334577888888888775431 22336779999999999999999999987544321 11 1111 11
Q ss_pred CCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCC--CCC
Q 037416 94 RPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLD--RLT 155 (362)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~--~~~ 155 (362)
.........+.++.. .-...|++|++|+++... .+..++..+. ...
T Consensus 256 ~vGesek~ir~lF~~----------------Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKV----------------AGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp SSSHHHHHHHHHHHH----------------HHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred cCchHHHHHHHHHHH----------------HHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 011122222233222 223458999999985221 1122222211 112
Q ss_pred CCcEEEEEeCChHHH-hhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 156 PVSRIIITTRNKQVL-RNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 156 ~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
.+..+|.||..++.. +.+ .....+.++.-+.++..++|..++........ -..+.|++.|.|+--|
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d---vdl~~LA~~T~GfSGA 390 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED---VNLETLVTTKDDLSGA 390 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC---CCHHHHHHHCCSCCHH
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc---CCHHHHHHhCCCCCHH
Confidence 344555565433222 221 22346888888999999999877644332221 1267888999887654
No 66
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=1.6e-06 Score=76.58 Aligned_cols=146 Identities=8% Similarity=0.054 Sum_probs=86.1
Q ss_pred cccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh---cCcccceeeecccccccCCCchHHHHHHHHHH
Q 037416 32 GVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS---GDFECSCFLENVREESQRPGGLACLRQKLLSN 108 (362)
Q Consensus 32 GR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (362)
|-+..++.|...+..+. .+..+++||+|+|||++|..+++... ........+. .. +. .... +-.+.+...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~-~~--~~-~~~i-d~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID-PE--GE-NIGI-DDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC-CS--SS-CBCH-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc-CC--cC-CCCH-HHHHHHHHH
Confidence 45667778888887433 67899999999999999999988532 1112222222 10 00 1111 222233333
Q ss_pred HhcCCCCCCchHHHHHhhCCceEEEEEeCCCC--chhhhHhhccCCCCCCCcEEEEEeCCh-HHHhhcCCCceEEcCCCC
Q 037416 109 LLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTC--FNQLESLIGSLDRLTPVSRIIITTRNK-QVLRNWGVSKIYEMQALE 185 (362)
Q Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~ilitsr~~-~~~~~~~~~~~~~l~~l~ 185 (362)
..... ..++.-++|+|+++. ......++..+..-++.+.+|+++... .+.+.+... .+++.+++
T Consensus 74 ~~~~p------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 74 LNYSP------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp HTSCC------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred Hhhcc------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 22111 023467999999963 344555555544444566777666443 343333333 89999999
Q ss_pred HHHHHHHHHHhh
Q 037416 186 YHHALELFCRHA 197 (362)
Q Consensus 186 ~~e~~~ll~~~~ 197 (362)
.++..+++....
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998776
No 67
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.41 E-value=5.3e-07 Score=73.33 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=32.0
Q ss_pred ccchHHHHHHHhccCC-CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 33 VESTVDEIESLLGVES-KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 33 R~~el~~l~~~l~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+...++.+.+++.... .....++|+|++|+|||||++.++..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445555555554321 2356799999999999999999999875
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.40 E-value=9.7e-07 Score=88.17 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=83.1
Q ss_pred CCcccccchHHHHHHHhccCC-----CC--eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHH
Q 037416 28 NQLVGVESTVDEIESLLGVES-----KG--VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLAC 100 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~-----~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (362)
..++|.+..++.+...+.... +. ...++++||+|+|||++|+.+++.+.......+.+.+..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc---
Confidence 458999999988888776421 11 23699999999999999999999874433333444422222110111
Q ss_pred HHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCc--hhhhHhhccCCC-----------CCCCcEEEEEeCCh
Q 037416 101 LRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCF--NQLESLIGSLDR-----------LTPVSRIIITTRNK 167 (362)
Q Consensus 101 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~-----------~~~~~~ilitsr~~ 167 (362)
. ......+. .....+|+||+++.. .....++..+.. ...++.+|+||...
T Consensus 568 -~-------------~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 -G-------------GQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -----------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred -c-------------chhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 0 00001111 112348999999633 333333322211 12355788888621
Q ss_pred -----------------HHHhhcCCCceEEcCCCCHHHHHHHHHHhh
Q 037416 168 -----------------QVLRNWGVSKIYEMQALEYHHALELFCRHA 197 (362)
Q Consensus 168 -----------------~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~ 197 (362)
.+... ....+.+++++.++..+++...+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 11111 23588999999999988887654
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.34 E-value=4.3e-06 Score=82.67 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=98.2
Q ss_pred CcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCc
Q 037416 29 QLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGG 97 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (362)
.+.|-+..+++|.+++.- +-..++-|+++||+|+|||+||+.++..+..+| +.+.+..-.+.....
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAGE 281 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHHHHSSCTTH
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHHhhcccchH
Confidence 478889999888886531 112367799999999999999999999765332 222211111110111
Q ss_pred hHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhhHhhccCCCC--CCCcEEEE
Q 037416 98 LACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLESLIGSLDRL--TPVSRIII 162 (362)
Q Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~--~~~~~ili 162 (362)
.....+.+ +.......|++|+||+++... ....++..+... ..+..+|.
T Consensus 282 se~~lr~l----------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIa 345 (806)
T 3cf2_A 282 SESNLRKA----------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA 345 (806)
T ss_dssp HHHHHHHH----------------HHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEE
T ss_pred HHHHHHHH----------------HHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEE
Confidence 11111111 223334578999999995321 012222221111 12334455
Q ss_pred EeCCh-HHHhhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 163 TTRNK-QVLRNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 163 tsr~~-~~~~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
+|... .+.+.+ .....+.++..+..+..++++..+....... +-....|+..|.|+.-+
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~---dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVGA 409 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT---TCCHHHHHHHCCSCCHH
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc---ccCHHHHHHhcCCCCHH
Confidence 55433 222221 2446789999999999999987653322211 12367899999987655
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.29 E-value=1.9e-05 Score=73.90 Aligned_cols=98 Identities=11% Similarity=-0.047 Sum_probs=60.1
Q ss_pred EEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEE---------eC----ChHHH-hhcCCCceEEcCCCCHHHHHHHHH
Q 037416 131 VLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIIT---------TR----NKQVL-RNWGVSKIYEMQALEYHHALELFC 194 (362)
Q Consensus 131 ~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilit---------sr----~~~~~-~~~~~~~~~~l~~l~~~e~~~ll~ 194 (362)
-++++|+++ +.+....++..+..-....-|+.| +. ...+. ...+....+.+++++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 489999996 445566666665544444322234 21 11111 112334567999999999999998
Q ss_pred HhhhcCCCCCCChHHHHHHHHHHc-CCCchHHHHHhh
Q 037416 195 RHAFKQNHPDVGYEELSSKAMNYA-QGVPLALNVLGC 230 (362)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~i~~~~-~G~Pl~i~~~~~ 230 (362)
.++..... ...++....|+..+ +|.|.....+..
T Consensus 377 ~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~ll~ 411 (456)
T 2c9o_A 377 IRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQLLT 411 (456)
T ss_dssp HHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHTHH
T ss_pred HHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHHHH
Confidence 77632221 23456788899988 888886554443
No 71
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.28 E-value=2.4e-07 Score=72.34 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=36.0
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
-.++|++..++++.+.+.........|.|+|++|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999999887764223344588999999999999999887643
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.23 E-value=1.3e-05 Score=69.83 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=92.3
Q ss_pred CCCCCCCcccccchHHHHHHHhccC-C---------CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVE-S---------KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~-~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
++..-+.++|.+....++.+....- . .-.+-++|+|++|+|||||++.++..+... .+.+... ...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~---~i~~~~~-~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGS-DFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHH-HHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC---EEEecHH-HHH
Confidence 4444556899988877776644310 0 112238999999999999999999876422 2222211 000
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHH-HHHhhCCceEEEEEeCCCCc----------------hhhhHhhccCCCC-
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDL-NFRRLSRMKVLIVFDDVTCF----------------NQLESLIGSLDRL- 154 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~~- 154 (362)
..... ... ..+.. +.......+.++++|+++.. ..+..+...+...
T Consensus 111 ~~~~~--~~~--------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 111 EMFVG--VGA--------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp HSTTT--HHH--------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HHHhh--HHH--------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 00000 000 01111 11122235689999999421 0122222222211
Q ss_pred -CCCcEEEEEeCChHHH-----hhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc
Q 037416 155 -TPVSRIIITTRNKQVL-----RNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP 222 (362)
Q Consensus 155 -~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 222 (362)
.....++.++..+... ........+.++..+.++..+++........... +.....++..+.|+.
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 245 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCc---ccCHHHHHHHcCCCC
Confidence 1222344455544222 1113445788999999999998886653322111 122566888888876
No 73
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.20 E-value=1.4e-05 Score=75.22 Aligned_cols=178 Identities=13% Similarity=0.166 Sum_probs=94.9
Q ss_pred CCCCCCCcccccchHHHHHHHhccC-C---------CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVE-S---------KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~-~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
++..-+.++|.+....++.+....- . .-++-++|+|++|+|||+|++.++...... .+.+. .....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~ 101 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFV 101 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHH
Confidence 3444567999998888877654320 0 113348999999999999999999876422 12222 11111
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch----------------hhhHhhccCCC--C
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDR--L 154 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~--~ 154 (362)
. .. ....... ...+... .....+.++++|+++... .+..++..+.- .
T Consensus 102 ~-~~-~g~~~~~-v~~lfq~------------a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 102 E-MF-VGVGAAR-VRDLFET------------AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp S-SC-TTHHHHH-HHHHTTT------------SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred H-hh-hhhHHHH-HHHHHHH------------HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 1 00 0000001 1111111 111246899999994221 12233322211 1
Q ss_pred CCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc
Q 037416 155 TPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP 222 (362)
Q Consensus 155 ~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 222 (362)
.....++.++..+..... ......+.++..+.++..+++...+....... +.....++..+.|+.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~---dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCC---SSTTHHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHhcCCCC
Confidence 223345555555433221 12345788999999999998876653322222 122567888899987
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=1.2e-05 Score=69.00 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=91.4
Q ss_pred CCCCCCCcccccchHHHHHHHhccC-C---------CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccc
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVE-S---------KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREES 92 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~-~---------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~ 92 (362)
|...-+.++|.+....++.+....- . .-.+-++|+|++|+|||||++.++...... .+.+... ...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~~~-~~~ 86 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGS-DFV 86 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHH-HHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEeeHH-HHH
Confidence 3444456889887777766543210 0 112238999999999999999999876422 1222210 000
Q ss_pred cCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhh-CCceEEEEEeCCCCch----------------hhhHhhccCCC--
Q 037416 93 QRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRL-SRMKVLIVFDDVTCFN----------------QLESLIGSLDR-- 153 (362)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~~~~llvlDd~~~~~----------------~~~~l~~~~~~-- 153 (362)
..... ... ..+..+.... ...+.++++|+++... ....+...+..
T Consensus 87 ~~~~~--~~~--------------~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~ 150 (254)
T 1ixz_A 87 EMFVG--VGA--------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 150 (254)
T ss_dssp HSCTT--HHH--------------HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC
T ss_pred HHHhh--HHH--------------HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC
Confidence 00000 000 0111122222 2357899999993211 11222222211
Q ss_pred CCCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCc
Q 037416 154 LTPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVP 222 (362)
Q Consensus 154 ~~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 222 (362)
......++.++..+..... ......+.++..+.++..+++........... +.....+++.+.|+.
T Consensus 151 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 151 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAE---DVDLALLAKRTPGFV 221 (254)
T ss_dssp TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCT---TCCHHHHHHTCTTCC
T ss_pred CCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCc---ccCHHHHHHHcCCCC
Confidence 1122334445554433221 12445788999999988888876653322111 122567888888875
No 75
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.14 E-value=2.6e-06 Score=66.91 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....++|+|++|+|||||++.++..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999999999998754
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.11 E-value=4.4e-05 Score=67.05 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.++.++|+||+|+|||+||+.+++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998743
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=0.00015 Score=69.37 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=86.1
Q ss_pred cccccchHHHHHHHhcc----CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHH
Q 037416 30 LVGVESTVDEIESLLGV----ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKL 105 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~----~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (362)
++|-++....+.+.+.- .......++|+||+|+||||||+.++..+...|..+. +.... ....+....
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~-~~~~~-------~~~~~~g~~ 154 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS-LGGVR-------DESEIRGHR 154 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC-CCC------------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE-ecccc-------hhhhhhhHH
Confidence 67777766666543321 1224568999999999999999999998754332111 11000 000000000
Q ss_pred HHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCchh------hhHhhccCCCC---------------CCCcEEEEEe
Q 037416 106 LSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFNQ------LESLIGSLDRL---------------TPVSRIIITT 164 (362)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~~~---------------~~~~~ilits 164 (362)
..... .................-+++||+++.... ...++..+... .....+|.|+
T Consensus 155 -~~~ig--~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt 231 (543)
T 3m6a_A 155 -RTYVG--AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231 (543)
T ss_dssp ------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred -HHHhc--cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence 00000 011112222222222334888999963321 12233222110 0334566666
Q ss_pred CCh-----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhc-----CCCC---CCChHHHHHHHHHHcC
Q 037416 165 RNK-----QVLRNWGVSKIYEMQALEYHHALELFCRHAFK-----QNHP---DVGYEELSSKAMNYAQ 219 (362)
Q Consensus 165 r~~-----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~-----~~~~---~~~~~~~~~~i~~~~~ 219 (362)
... .+...+ ..+.+++++.++..+++...+.. .... ....++....+++.+.
T Consensus 232 N~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 232 NNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp SSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred CccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 533 233333 47899999999999988876522 1111 1123566667666544
No 78
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.08 E-value=1.5e-05 Score=65.90 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=39.9
Q ss_pred CCCCcccccc----hHHHHHHHhccCCCC--eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 26 NKNQLVGVES----TVDEIESLLGVESKG--VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 26 ~~~~~vGR~~----el~~l~~~l~~~~~~--~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.-+.|++.+. .++.+.+++...... .+.++|+|++|+|||+|++.++..+......++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3445776543 444555555532221 267999999999999999999998765533444443
No 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.07 E-value=4.3e-05 Score=69.66 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=37.6
Q ss_pred CCcccccchHHHHHHHhc----c------------------------CCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 28 NQLVGVESTVDEIESLLG----V------------------------ESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~----~------------------------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.++|.+...+.|..++. . .......++++|++|+|||++|+.+++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 348899888888877662 0 112345689999999999999999999874
No 80
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.06 E-value=0.00015 Score=62.95 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=65.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEE
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLI 133 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ll 133 (362)
++|+||+|+|||||++.++..+... .+.+.. .... ........+.+ ..+ +.......+.++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g-~~l~--~~~~~~~~~~i-~~v------------f~~a~~~~p~i~ 107 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVKG-PELL--NMYVGESERAV-RQV------------FQRAKNSAPCVI 107 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEET-TTTC--SSTTHHHHHHH-HHH------------HHHHHHTCSEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEc-HHHH--hhhhhHHHHHH-HHH------------HHHHHhcCCCeE
Confidence 9999999999999999999875432 223321 1110 00011111111 110 111112357899
Q ss_pred EEeCCCCch-------------hhhHhhccCC--CCCCCcEEEEEeCChHHHhh-----cCCCceEEcCCCCHHHHHHHH
Q 037416 134 VFDDVTCFN-------------QLESLIGSLD--RLTPVSRIIITTRNKQVLRN-----WGVSKIYEMQALEYHHALELF 193 (362)
Q Consensus 134 vlDd~~~~~-------------~~~~l~~~~~--~~~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~e~~~ll 193 (362)
++|+++... ....+...+. .......++.++..+..... ......+.++..+.++..+++
T Consensus 108 ~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il 187 (274)
T 2x8a_A 108 FFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAIL 187 (274)
T ss_dssp EEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHH
T ss_pred eeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHH
Confidence 999995321 0111221111 11122344555554433222 134567889999999999999
Q ss_pred HHhh
Q 037416 194 CRHA 197 (362)
Q Consensus 194 ~~~~ 197 (362)
....
T Consensus 188 ~~~~ 191 (274)
T 2x8a_A 188 KTIT 191 (274)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8765
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.05 E-value=3e-05 Score=77.63 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=92.9
Q ss_pred CCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 28 NQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
+.++|.+..+++|.+++.. .-.....|+|+|++|+||||||+.++..+...| +.+.+..-.+....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAG 280 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHHHHSSSSTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEchHhhhhhhh
Confidence 4589999999999887752 123356799999999999999999998764332 22221111110000
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHHHHhhCCceEEEEEeCCCCch-------------hhhHh---hccCCCCCCCcEE
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMKVLIVFDDVTCFN-------------QLESL---IGSLDRLTPVSRI 160 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~llvlDd~~~~~-------------~~~~l---~~~~~~~~~~~~i 160 (362)
........+ +.......+.++++|+++... ....+ +..+.. .....+
T Consensus 281 ~~~~~l~~v----------------f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~v 343 (806)
T 1ypw_A 281 ESESNLRKA----------------FEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIV 343 (806)
T ss_dssp HHHHHHHHH----------------HHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEE
T ss_pred hHHHHHHHH----------------HHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEE
Confidence 111111111 112222357899999993111 01222 222221 233445
Q ss_pred EEEeCChH-HHhhc----CCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCch
Q 037416 161 IITTRNKQ-VLRNW----GVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPL 223 (362)
Q Consensus 161 litsr~~~-~~~~~----~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 223 (362)
+.++.... +...+ .....+.+...+.++..+++........... ......++..+.|+.-
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~---~~~l~~la~~t~g~~g 408 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD---DVDLEQVANETHGHVG 408 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCT---TCCTHHHHHSCSSCCH
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcc---cchhHHHHHhhcCcch
Confidence 55554432 21111 1234677888899999999887653322111 1124556667776653
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.91 E-value=5.6e-05 Score=76.42 Aligned_cols=50 Identities=16% Similarity=0.369 Sum_probs=39.1
Q ss_pred CcccccchHHHHHHHhccCC-------CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 29 QLVGVESTVDEIESLLGVES-------KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.++|.+..++.+...+.... .....++|+|++|+|||++|+.+++.+...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 47999999998888775311 112578999999999999999999987543
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.82 E-value=7.3e-05 Score=74.68 Aligned_cols=48 Identities=17% Similarity=0.323 Sum_probs=37.8
Q ss_pred CCcccccchHHHHHHHhccCC-------CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 28 NQLVGVESTVDEIESLLGVES-------KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++|.+..++.+...+.... .....++++|++|+|||++|+.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 358899999988887665311 123478999999999999999999987
No 84
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.66 E-value=0.00011 Score=64.98 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=34.6
Q ss_pred chHHHHHHHhccCCC-CeEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceee
Q 037416 35 STVDEIESLLGVESK-GVYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFL 85 (362)
Q Consensus 35 ~el~~l~~~l~~~~~-~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~ 85 (362)
..++.+.+++..... ....++|+|++|+|||+||..+++.+. .....+.++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 344455566653222 256789999999999999999999876 543333344
No 85
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.53 E-value=0.0019 Score=57.81 Aligned_cols=156 Identities=12% Similarity=-0.059 Sum_probs=98.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLS 127 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 127 (362)
.-.++.+++|+.|.||++.+..+...+. ..++....+. .. . ..+...+...+... -+-
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~-~~~~~~l~~~~~~~----------------plf 74 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---P-NTDWNAIFSLCQAM----------------SLF 74 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---T-TCCHHHHHHHHHHH----------------HHC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---C-CCCHHHHHHHhcCc----------------CCc
Confidence 3567899999999999999999988764 2332111111 11 1 23333433332111 122
Q ss_pred CceEEEEEeCCCC-c--hhhhHhhccCCCCCCCcEEEEEeCC-------hHHHhh-cCCCceEEcCCCCHHHHHHHHHHh
Q 037416 128 RMKVLIVFDDVTC-F--NQLESLIGSLDRLTPVSRIIITTRN-------KQVLRN-WGVSKIYEMQALEYHHALELFCRH 196 (362)
Q Consensus 128 ~~~~llvlDd~~~-~--~~~~~l~~~~~~~~~~~~ilitsr~-------~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~ 196 (362)
+.+-++|+|+++. . ...+.+...+....+++.+|+++.. ..+.+. .+....+...+++..+...++...
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4466888999864 3 4455566555544566777766543 133333 345678999999999999999887
Q ss_pred hhcCCCCCCChHHHHHHHHHHcCCCchHHHH
Q 037416 197 AFKQNHPDVGYEELSSKAMNYAQGVPLALNV 227 (362)
Q Consensus 197 ~~~~~~~~~~~~~~~~~i~~~~~G~Pl~i~~ 227 (362)
+...+. ...++.++.+++.++|+...+..
T Consensus 155 ~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 155 AKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 744332 23467889999999999988754
No 86
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.51 E-value=0.00014 Score=64.88 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=39.4
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+.++|++..+..+...+..+ ..++++|++|+|||+||+.+++.+...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 56999999999998887632 358999999999999999999987543
No 87
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.49 E-value=0.00022 Score=70.64 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=75.6
Q ss_pred CCcccccchHHHHHHHhcc-----------CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCC
Q 037416 28 NQLVGVESTVDEIESLLGV-----------ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPG 96 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (362)
+.+.|-+...++|.+.+.- +....+-++++||+|+|||.+|+.++..+...| +..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v---------- 542 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISI---------- 542 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EEC----------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEe----------
Confidence 3456667777777665431 112245689999999999999999999864332 111
Q ss_pred chHHHHHHHHHHHhcCCCCCCchHHH-HHhhCCceEEEEEeCCCCch----------------hhhHhhccCCCC--CCC
Q 037416 97 GLACLRQKLLSNLLKDKNVIPYIDLN-FRRLSRMKVLIVFDDVTCFN----------------QLESLIGSLDRL--TPV 157 (362)
Q Consensus 97 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~--~~~ 157 (362)
...++. .....+ ....+..+ ...-...|++|+||+++... ....|+..+.-. ..+
T Consensus 543 ~~~~l~----s~~vGe--se~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~ 616 (806)
T 3cf2_A 543 KGPELL----TMWFGE--SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 616 (806)
T ss_dssp CHHHHH----TTTCSS--CHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSS
T ss_pred ccchhh----ccccch--HHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCC
Confidence 001111 110000 11122222 22334568999999994221 122333322211 122
Q ss_pred cEEEEEe-CCh----HHHhhcCCCceEEcCCCCHHHHHHHHHHhhhcCCCCCCChHHHHHHHHHHcCCCchH
Q 037416 158 SRIIITT-RNK----QVLRNWGVSKIYEMQALEYHHALELFCRHAFKQNHPDVGYEELSSKAMNYAQGVPLA 224 (362)
Q Consensus 158 ~~ilits-r~~----~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl~ 224 (362)
.-+|.+| |.. .+.........+.++.-+.++..++|...+....... .-..+.|++.|.|+--+
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~---~~dl~~la~~t~g~SGa 685 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK---DVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC---C----------------
T ss_pred EEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC---CCCHHHHHHhCCCCCHH
Confidence 2333344 322 2222123456778888788888888876653322221 12366788888876544
No 88
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.42 E-value=0.00011 Score=69.07 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 5 LTNDVVNHILKRLDEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 5 ~~~~i~~~~~~~~~~~~~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+.++.+...+. +.++|++..++.+...+.. ...|+|+|++|+|||+||+.++..+.
T Consensus 8 ~~~~~~~~l~~~l~---------~~ivGq~~~i~~l~~al~~----~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 8 LLAERISRLSSSLE---------KGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HHHHHHHHHHHHHH---------TTCSSCHHHHHHHHHHHHH----TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHhc----CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 34445555555555 3499999999998887763 23689999999999999999999764
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.42 E-value=0.00026 Score=57.56 Aligned_cols=115 Identities=18% Similarity=0.149 Sum_probs=63.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHH---HhcCCCC-C----------
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSN---LLKDKNV-I---------- 116 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~-~---------- 116 (362)
...|.|++..|.||||.|...+-+...+--.+.++...... . ..+-..+.+.+.-. +...... .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 45688888888999999999998876554444444433321 1 22223333332000 0000000 0
Q ss_pred -CchHHHHHhhCCc-eEEEEEeCC-----CCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 117 -PYIDLNFRRLSRM-KVLIVFDDV-----TCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 117 -~~~~~~~~~l~~~-~~llvlDd~-----~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
..+....+.+.+. -=+||||++ ...-..+.+...+........+|+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 0111244444443 459999999 23334455555555566778899999975
No 90
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.33 E-value=0.00011 Score=59.67 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=27.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+.|+|.||+|+|||||++.+..+....|..++-.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~T 36 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 36 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEe
Confidence 45889999999999999999988765555554443
No 91
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.33 E-value=0.00017 Score=65.30 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred cccccchHHHHHHHhc-------------cCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 30 LVGVESTVDEIESLLG-------------VESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~-------------~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
++|.+..++.+...+. ......+.++++||+|+|||++|+.+++.+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 7999999998888772 1112345689999999999999999999873
No 92
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.31 E-value=0.0014 Score=56.03 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=26.6
Q ss_pred HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 40 IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 40 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+..|+....++...++++||+|+|||.++..+++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344444222445579999999999999999999864
No 93
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.29 E-value=0.00013 Score=59.26 Aligned_cols=26 Identities=19% Similarity=-0.103 Sum_probs=22.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.+++++|+.|+||||++..++.++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999888877643
No 94
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.24 E-value=0.0007 Score=59.43 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.+.+.|+|++|+|||+|+.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999986
No 95
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.24 E-value=0.00039 Score=57.27 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=34.1
Q ss_pred ccchHHHHHHHhccC-CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 33 VESTVDEIESLLGVE-SKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 33 R~~el~~l~~~l~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
|++.++.|.+.+... .....+++|.|++|+||||+++.+...+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 555666676666542 244678999999999999999999987643
No 96
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.21 E-value=0.00016 Score=65.02 Aligned_cols=110 Identities=10% Similarity=0.062 Sum_probs=59.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccce-eeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSC-FLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSR 128 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 128 (362)
....++|.|+.|+|||||++.++..+.......+ .+........ ... . ....+.............+...+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~~~-~----~~v~q~~~~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-ESK-K----CLVNQREVHRDTLGFSEALRSALRE 195 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-CCS-S----SEEEEEEBTTTBSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-hcc-c----cceeeeeeccccCCHHHHHHHHhhh
Confidence 3458999999999999999999887643322222 2211000000 000 0 0000000011111222347777888
Q ss_pred ceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCChH
Q 037416 129 MKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNKQ 168 (362)
Q Consensus 129 ~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~~ 168 (362)
.|=+|++|+..+.+.++.+.... ..+..+++|+...+
T Consensus 196 ~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~ 232 (356)
T 3jvv_A 196 DPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTS 232 (356)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSS
T ss_pred CcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccCh
Confidence 89999999998766655544332 12445777776543
No 97
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.17 E-value=0.00069 Score=60.75 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...|...|. .+=....++.|+|++|+|||||+.+++..+...-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 456666664 22234678999999999999999999998765444566665
No 98
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.0018 Score=53.81 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=26.1
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHH
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.|...+..+=....++.|.|++|+|||||+..++.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34444432223456899999999999999999998
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.15 E-value=0.0008 Score=59.78 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=25.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
....+++|.|+.|+||||+++.++..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999876544
No 100
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.13 E-value=0.00016 Score=64.96 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=37.8
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
++..-+.++|.+.....+...... .....++|+|++|+|||++|+.+++.+.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~--~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD--PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC--GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhC--CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 444445699999876665544432 2233489999999999999999999764
No 101
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.10 E-value=0.00043 Score=57.31 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=30.4
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+++|.+.+........+++|.|++|+|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445454443334567899999999999999999988765
No 102
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.0003 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+|+|.|++|+||||+++.+++++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999864
No 103
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.07 E-value=0.0014 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+.++|+|.||+|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999875
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.01 E-value=0.021 Score=51.55 Aligned_cols=50 Identities=30% Similarity=0.332 Sum_probs=37.6
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...++|....+.++...+.........|.|+|++|+||+.+|+.+.....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 35689998888887776654223344588999999999999998877543
No 105
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.00 E-value=0.0016 Score=56.93 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=27.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcC--cccceeee
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGD--FECSCFLE 86 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~ 86 (362)
++.|+|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999998876543 34567765
No 106
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.97 E-value=0.00069 Score=55.36 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.6
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 35 STVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 35 ~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+..|..++.. -++...++|+||+|+|||++|..+++.+.
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 335556666642 23345699999999999999999999874
No 107
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.94 E-value=0.00081 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+|+|.||+|+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 108
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00062 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++++|.||+|+|||||++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999998754
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.93 E-value=0.00099 Score=58.13 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=25.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.....+|+|.|++|+|||||++.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345778999999999999999999887753
No 110
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.91 E-value=0.00054 Score=54.58 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 111
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.89 E-value=0.00053 Score=55.67 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=26.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCccccee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCF 84 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~ 84 (362)
++++|.||.|+|||||++.++..+...+...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~ 34 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVS 34 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEee
Confidence 468999999999999999999877544444433
No 112
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.89 E-value=0.0007 Score=56.04 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....+++|.||+|+|||||++.++..+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 34568999999999999999999987653
No 113
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.85 E-value=0.00088 Score=56.92 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=29.5
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 35 STVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 35 ~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+.++...+......+..|+|.|++|+||||+++.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444333223456789999999999999999999875
No 114
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.85 E-value=0.0008 Score=54.98 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
..++++|.||+|+|||||++.++......+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~ 47 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKF 47 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccE
Confidence 456899999999999999999998754333
No 115
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.83 E-value=0.0012 Score=54.19 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+++|.|++|+||||+++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999875
No 116
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.82 E-value=0.0019 Score=56.30 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.+++|.|++|+||||+++.++.++.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998753
No 117
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.80 E-value=0.00093 Score=54.30 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....|+|.|++|+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.80 E-value=0.00075 Score=54.54 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 119
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.78 E-value=0.00086 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998863
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.77 E-value=0.00087 Score=53.78 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.+|+|.|++|+||||+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999988
No 121
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.77 E-value=0.0023 Score=56.03 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=27.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
..++++.|++|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67889999999999999999998876543334443
No 122
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.76 E-value=0.0031 Score=55.78 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 6 TNDVVNHILKRLDEVFQPRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 6 ~~~i~~~~~~~~~~~~~~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
+.+++.++.+.+... .....|-..-+..|...+ .+=....+++|.|++|+|||+|+.+++.........++|+
T Consensus 30 ~~~~~~~~~~~~~~~------~~~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 30 IDEALVTVYEEIESA------DGNITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CHHHHHHHHHHHHTC------SSSCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHhc------cCCCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 445555655555432 111222233344555544 2223456899999999999999999998764332445555
Q ss_pred e
Q 037416 86 E 86 (362)
Q Consensus 86 ~ 86 (362)
.
T Consensus 103 s 103 (315)
T 3bh0_A 103 S 103 (315)
T ss_dssp E
T ss_pred E
Confidence 4
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.76 E-value=0.0028 Score=58.27 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.++++++.|++|+||||++..++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999887654
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.76 E-value=0.0013 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..|+|.|++|+||||+++.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998764
No 125
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.74 E-value=0.0061 Score=56.26 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999987654
No 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.70 E-value=0.0014 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.519 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998875
No 127
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.70 E-value=0.00088 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.+|+|.|++|+||||+++.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 46899999999999999999 54
No 128
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.70 E-value=0.0051 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-+++|+|++|+|||++|......
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36789999999999999886554
No 129
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.66 E-value=0.0011 Score=53.84 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=23.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..|+|.|++|+||||+++.++.++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 130
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.65 E-value=0.00086 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..|+|.|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 131
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.64 E-value=0.0028 Score=56.10 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|+|++|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999887654
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.63 E-value=0.0011 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999999886
No 133
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.0013 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=22.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+++|.|++|+|||||++.++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4689999999999999999998763
No 134
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.63 E-value=0.0014 Score=60.48 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=38.1
Q ss_pred CCcccccchHHHHHHHhccC------------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVE------------SKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+.++|.+...+.|..++... ....+.++++||+|+|||++|+.++..+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45888888888887665210 1124569999999999999999999987543
No 135
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.63 E-value=0.0095 Score=54.84 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.+|+++|++|+||||++..++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999887654
No 136
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.59 E-value=0.001 Score=54.78 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..++++|.|++|+||||+++.++..+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456799999999999999999998764
No 137
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.0025 Score=51.53 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
....|+|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999987543
No 138
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.0011 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+.|+|.|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 139
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.58 E-value=0.0011 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+|+|.|++|+||||+++.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.57 E-value=0.0016 Score=52.98 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+..|+|.|++|+||||+++.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998875
No 141
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.56 E-value=0.0024 Score=59.03 Aligned_cols=25 Identities=32% Similarity=0.785 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.++|+|++|+|||||+..++.....
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhh
Confidence 4789999999999999999887643
No 142
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.55 E-value=0.0014 Score=53.73 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999876
No 143
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.54 E-value=0.0018 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...|+|.|++|+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999875
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.53 E-value=0.0019 Score=54.67 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...++.|.|++|+|||||+.+++......-..++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3568999999999999999999887644434555554
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.52 E-value=0.0074 Score=52.96 Aligned_cols=29 Identities=17% Similarity=0.357 Sum_probs=25.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...++.|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46789999999999999999999987654
No 146
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.51 E-value=0.0015 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|+.|+|||||++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998864
No 147
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.50 E-value=0.0019 Score=53.31 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...|+|.|++|+||||+++.+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3579999999999999999999987543
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.49 E-value=0.0016 Score=53.04 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....|+|.|++|+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 149
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.49 E-value=0.002 Score=52.89 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.....|+|.|++|+||||+++.+++.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999875
No 150
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.48 E-value=0.0018 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+.|+|.|++|+||||+++.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999999764
No 151
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.48 E-value=0.0016 Score=53.45 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.++|.||+|+|||||++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35689999999999999999988654
No 152
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.47 E-value=0.002 Score=52.80 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+..|+|.|++|+||||+++.++..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998763
No 153
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.47 E-value=0.0025 Score=56.31 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=34.2
Q ss_pred cccccchHHHHHHHhccC--CCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 30 LVGVESTVDEIESLLGVE--SKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
++|....+..+...+... ...+.+++|.|++|+|||||++.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455566666665544432 33466899999999999999999987765
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.47 E-value=0.0016 Score=54.61 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=26.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..+++|.|++|+|||||+..++......-..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 468899999999999999999976543323344443
No 155
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.47 E-value=0.0023 Score=50.78 Aligned_cols=28 Identities=14% Similarity=0.168 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+++.|.|++|+|||||+..++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4679999999999999999999987644
No 156
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.46 E-value=0.0022 Score=51.94 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998753
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.0083 Score=52.41 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
...+++|.|++|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999988764
No 158
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.45 E-value=0.002 Score=53.20 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+++|.|+.|+|||||++.++..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999988764
No 159
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0045 Score=54.28 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|.|+.|+||||+++.++..+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999887543
No 160
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0053 Score=55.09 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|.|+.|+||||+++.++..+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 36789999999999999999999887543
No 161
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.002 Score=54.97 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+|+|.|++|+||||+++.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4467899999999999999999998754
No 162
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.44 E-value=0.0043 Score=55.17 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=35.1
Q ss_pred cccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 32 GVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 32 GR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
|-..=+..|...+. +=....+++|.|++|+|||+|+.+++......-..+.|++
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 33333455555543 2234568999999999999999999988654333344443
No 163
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0019 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999987
No 164
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.43 E-value=0.0017 Score=53.04 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.+++.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999764
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.43 E-value=0.0018 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.536 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 166
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.42 E-value=0.0013 Score=52.99 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999763
No 167
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.42 E-value=0.002 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999999865
No 168
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.42 E-value=0.002 Score=56.34 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++|+|.||+|+|||+|+..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 46889999999999999999998753
No 169
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.41 E-value=0.0024 Score=52.77 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...|+|.|++|+||||+++.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999987543
No 170
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.40 E-value=0.0013 Score=59.04 Aligned_cols=26 Identities=23% Similarity=0.078 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.++|+|++|+|||||++.++....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHh
Confidence 45688999999999999999988764
No 171
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.40 E-value=0.0013 Score=63.68 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=39.6
Q ss_pred CCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 27 KNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 27 ~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
-+.++|.+..++.+...+..+ ..++|+|++|+||||||+.++..+...
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 345899999999998888632 478999999999999999999976443
No 172
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.39 E-value=0.0014 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999998764
No 173
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.38 E-value=0.0025 Score=55.59 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+++++|.||+|+|||+|+..++..+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 3467899999999999999999999753
No 174
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0017 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.++..+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999763
No 175
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.37 E-value=0.0021 Score=53.03 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....|+|.|+.|+||||+++.+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999998754
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.37 E-value=0.0021 Score=54.63 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+...++|.|++|+|||||++.+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998763
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.36 E-value=0.0056 Score=55.08 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+...+....++..+|+|+|.+|+|||||+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444444567889999999999999999998876443
No 178
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.36 E-value=0.002 Score=56.95 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.++|+|.||+|+|||+|+..++.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999999864
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.36 E-value=0.0023 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++|.|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988753
No 180
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.35 E-value=0.0024 Score=57.22 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=36.4
Q ss_pred hHHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 36 TVDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 36 el~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
-+..|...|. .+=...+++.|+|++|+|||||+.+++......-..++|+.
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3455666664 22234668999999999999999999987654444566665
No 181
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.35 E-value=0.0026 Score=57.12 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=35.8
Q ss_pred HHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+..|...+. .+=...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 48 ~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 48 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455666553 22234568999999999999999999987654444566665
No 182
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.35 E-value=0.0021 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|++|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998876
No 183
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.35 E-value=0.0025 Score=53.14 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+++|.||+|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456899999999999999999988764
No 184
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.35 E-value=0.0032 Score=55.28 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|.|++|+||||++..++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45689999999999999999999877654
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.34 E-value=0.0022 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..|+|.|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998865
No 186
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0031 Score=53.17 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..|..++..+=....++.|.|++|+|||||+..++...
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34455553222345689999999999999999999863
No 187
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.0022 Score=53.36 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998763
No 188
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.34 E-value=0.01 Score=54.81 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=37.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeeecccccccCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSN 108 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (362)
.+.++|.|++|+|||+|+.+++.... .+.+.+++.. .........++.+.+...
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~----iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG----VGERTREGNDLYHEMIES 207 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE----ESCCHHHHHHHHHHHHHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE----CCCcchHHHHHHHHhhhc
Confidence 44578999999999999999999863 3335555543 333244566777766543
No 189
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.33 E-value=0.0023 Score=53.51 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=27.1
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|...+..+=....+++|.|++|+|||||++.++...
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443222346789999999999999999998754
No 190
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.32 E-value=0.0025 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.+++|.|++|+|||||++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999863
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.30 E-value=0.003 Score=50.69 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....|+|.|+.|+||||+++.++..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356789999999999999999998764
No 192
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.29 E-value=0.0026 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....+|+|.|+.|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999885
No 193
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.28 E-value=0.0029 Score=54.29 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999864
No 194
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.28 E-value=0.0026 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 195
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.28 E-value=0.0022 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAI 71 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~ 71 (362)
...+++|.|++|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999999964
No 196
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.27 E-value=0.0049 Score=57.57 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
+.++|.|++|+|||+++..++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999876543
No 197
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.27 E-value=0.0026 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|+|.|++|+||||+++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 198
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.27 E-value=0.0028 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|++|+||||+++.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.25 E-value=0.0027 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=22.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.|+|.|+.|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999874
No 200
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.21 E-value=0.0025 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...|+|.|++|+||||+++.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
No 201
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.20 E-value=0.0028 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|+|.|++|+||||+++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 202
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.20 E-value=0.0094 Score=55.54 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc-Ccccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG-DFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~ 86 (362)
...+++|.|++|+|||||+.+++..... ....++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4568999999999999999999998653 222344443
No 203
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.19 E-value=0.003 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....+|+|.|++|+||||+++.+...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345789999999999999999998864
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.18 E-value=0.0029 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...|+|.|+.|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999976
No 205
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.18 E-value=0.0035 Score=55.26 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++|+|.|++|+|||||+..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999753
No 206
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.18 E-value=0.0024 Score=53.30 Aligned_cols=26 Identities=23% Similarity=0.154 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999999864
No 207
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.17 E-value=0.0089 Score=55.44 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+..|...+. +=....+++|.|++|+|||+|+.+++......-..++|++
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 444544442 2234568999999999999999999988654323344443
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.16 E-value=0.0037 Score=52.14 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=29.6
Q ss_pred chHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 35 STVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 35 ~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+..+.+...+. ......|+|.|.+|+|||||+..++.....
T Consensus 24 ~~a~~~r~~~~--~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 24 RLADKNRKLLN--KHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHH--HTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--hCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 33444555443 235678889999999999999999987543
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.16 E-value=0.0072 Score=54.08 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=33.7
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc------Ccccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG------DFECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~ 86 (362)
..|..++..+=....++.|+|++|+|||+|+.+++..... ....++|+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455555333345678999999999999999999987432 223556665
No 210
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.16 E-value=0.0029 Score=53.98 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+..++|.|++|+||||+++.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999998764
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.15 E-value=0.0027 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+.|+|.|++|+|||+||..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999874
No 212
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.13 E-value=0.0094 Score=55.29 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=38.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh-cCcccceeeecccccccCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS-GDFECSCFLENVREESQRPGGLACLRQKLLSN 108 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (362)
.+.++|.|++|+|||+|+.++++... .+.+.++|.. .........++.+.+...
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~----iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG----VGERTREGNDLYMEMKES 219 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE----ESCCSHHHHHHHHHHHHT
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE----cccCcHHHHHHHHhhhcc
Confidence 44578999999999999999999864 3445666654 333355677777777543
No 213
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.13 E-value=0.011 Score=53.35 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=36.4
Q ss_pred hHHHHHHHhc-cCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 36 TVDEIESLLG-VESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 36 el~~l~~~l~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
=+..|...|. .+=....++.|+|++|+|||+|+.+++.........++|+.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 4556666664 22223568899999999999999999988654444566665
No 214
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.12 E-value=0.004 Score=52.81 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|+.|+|||||++.++..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 215
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.11 E-value=0.0035 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+|+|.|++|+||||+++.++.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998763
No 216
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.11 E-value=0.0026 Score=53.00 Aligned_cols=26 Identities=31% Similarity=0.680 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.||+|+|||||++.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999998865
No 217
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.10 E-value=0.0031 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+++|.|+.|+|||||++.++..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999988653
No 218
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.09 E-value=0.0068 Score=50.35 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.-.|++.|+||+||||++..++..+...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3458899999999999999999887554
No 219
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.09 E-value=0.0037 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+|+|.|++|+|||||+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999999864
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.08 E-value=0.0045 Score=51.15 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998875
No 221
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.07 E-value=0.0033 Score=51.56 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999988
No 222
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.07 E-value=0.01 Score=48.77 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=54.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCC--CCCchHHHHHhhC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKN--VIPYIDLNFRRLS 127 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~ 127 (362)
...+.+++|+-|.||||.+...+.++......++.+...... ......+...+ ..... .......+.....
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~---R~ge~~i~s~~----g~~~~a~~~~~~~~~~~~~~ 99 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN---RYSEEDVVSHN----GLKVKAVPVSASKDIFKHIT 99 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSGGGGGGGCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC---cchHHHHHhhc----CCeeEEeecCCHHHHHHHHh
Confidence 456888999999999999999988875543334433312111 11111222222 11111 1122223333333
Q ss_pred CceEEEEEeCCC--CchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 128 RMKVLIVFDDVT--CFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 128 ~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
+.--+|++|++. +.+.++.+. .+. ..+..+|++.++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~-~l~--~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQ-VLA--NRGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHH-HHH--HTTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHHHH-HHh--hCCCEEEEEeccc
Confidence 333499999984 444453333 222 1356799998854
No 223
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.07 E-value=0.0045 Score=55.10 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+....++|.|++|+||||+++.++..+...
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345678999999999999999999876543
No 224
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.06 E-value=0.003 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..|+|.|++|+||||+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999986
No 225
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.06 E-value=0.0044 Score=48.69 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....+++|.|+.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999999876
No 226
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.04 E-value=0.0047 Score=54.80 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=32.9
Q ss_pred HHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC------cccceeee
Q 037416 38 DEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD------FECSCFLE 86 (362)
Q Consensus 38 ~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~ 86 (362)
..|...|..+=....++.|+|++|+|||+|+.+++...... ...++|+.
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 34455543222235689999999999999999999875322 23456665
No 227
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.03 E-value=0.0037 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999977
No 228
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.01 E-value=0.002 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+|+|.|++|+||||+++.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999998753
No 229
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.99 E-value=0.0055 Score=52.51 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+++|.|+.|+|||||++.++..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3566899999999999999999988654
No 230
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.0055 Score=50.82 Aligned_cols=41 Identities=24% Similarity=0.395 Sum_probs=29.7
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..+.+...+. ....+.++|.|.+|+|||||+..++......
T Consensus 17 ~~~~~~~~~~--~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALR--ESGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHH--HHTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhc--ccCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444444443 2356789999999999999999999876443
No 231
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.99 E-value=0.005 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+++|.|+.|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999988764
No 232
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.97 E-value=0.0054 Score=49.91 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....+|+|+|+.|+||||+++.+.+.+
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999999864
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.97 E-value=0.0066 Score=48.53 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..++++|.|++|+|||||+..++..+..
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3568999999999999999999987653
No 234
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.96 E-value=0.031 Score=51.88 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=32.8
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeee
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 86 (362)
+..|...+ .+=....++.|.|++|+|||+|+.+++...... -..++|+.
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34454544 222345689999999999999999999886532 23344443
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.95 E-value=0.01 Score=64.11 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..+.+.|+||+|+|||+||.+++......-..++|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4678999999999999999999988765545666665
No 236
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.94 E-value=0.0075 Score=50.26 Aligned_cols=37 Identities=22% Similarity=-0.068 Sum_probs=28.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
....+++++|+.|+||||++..++.++..+...+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3457899999999999999999999876553334433
No 237
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.94 E-value=0.0022 Score=55.96 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+..+|+|.|++|+||||+++.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998764
No 238
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.94 E-value=0.0069 Score=53.39 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
++.++|.|+|-|||||||.+..++.-+...-..+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45789999999999999999999888765433344343
No 239
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.93 E-value=0.0049 Score=51.72 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 240
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.91 E-value=0.12 Score=43.30 Aligned_cols=41 Identities=22% Similarity=0.132 Sum_probs=29.1
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 30 LVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+-=|..+.+.+..++. .+ . ++|.|+.|.|||.++..++...
T Consensus 92 ~~l~~~Q~~ai~~~~~---~~-~-~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 92 ISLRDYQEKALERWLV---DK-R-GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCHHHHHHHHHHTT---TS-E-EEEEESSSTTHHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHHHh---CC-C-EEEEeCCCCCHHHHHHHHHHHc
Confidence 3445555555666654 22 2 7899999999999999888765
No 241
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.91 E-value=0.0049 Score=57.92 Aligned_cols=49 Identities=6% Similarity=0.058 Sum_probs=37.1
Q ss_pred CcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 29 QLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 29 ~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
..+.|....+.+.+..........+|++.|.+|+||||+++.++.++..
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3556666666777766432334578999999999999999999999864
No 242
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.91 E-value=0.0081 Score=57.14 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=33.6
Q ss_pred cccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 30 LVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 30 ~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
++.+....+.+.......-....+++|.|++|+|||||++.++..+...
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 4444444455555432112345789999999999999999999987643
No 243
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.89 E-value=0.0055 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|++|+|||||++.++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 244
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.88 E-value=0.0052 Score=51.31 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 245
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.88 E-value=0.038 Score=61.82 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+.+.++||+|+|||++|+.++...
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC
Confidence 3568899999999999998887754
No 246
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.86 E-value=0.031 Score=45.59 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=26.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
.|+|-|+-|+||||.++.+++.+......+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999987654333333
No 247
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.86 E-value=0.0054 Score=50.34 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 248
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.85 E-value=0.014 Score=54.73 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..++|.|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 36789999999999999999999877644
No 249
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.85 E-value=0.0093 Score=52.48 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....+++|.|+.|+|||||++.++..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467899999999999999999988765
No 250
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.84 E-value=0.0053 Score=50.33 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=20.8
Q ss_pred CCCCCCCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 23 PRDNKNQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 23 ~~~~~~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
||+.+..--++....+.+.+... ....--|+|.|.+|+|||||+..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~m~~~~~--~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 4 SHHHHHHSSGLVPRGSHMENLYF--QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----------------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccccccccCCcccchhHHHhHhh--cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 44445555556666666655443 233456889999999999999998864
No 251
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.83 E-value=0.0058 Score=51.37 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45689999999999999999999864
No 252
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.83 E-value=0.0063 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 253
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.82 E-value=0.0055 Score=55.51 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++|+|.||+|+|||+|+..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999999864
No 254
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.82 E-value=0.0053 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 255
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.81 E-value=0.0032 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=16.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHH-HHh
Q 037416 51 VYALGIWGISGIGKTAIARAIF-HKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~-~~~ 75 (362)
..+++|.|+.|+|||||++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999998 654
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.79 E-value=0.004 Score=49.63 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+.+.|+|++|+|||||++.++..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46899999999999999999987654
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.77 E-value=0.0072 Score=52.78 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|.|++|+|||||+..++..+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999886544
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.74 E-value=0.0036 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...++.|.|++|+|||+|+.+++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999988763
No 259
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.72 E-value=0.011 Score=53.08 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=27.9
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.|...|..+=....++.|+|++|+|||||+..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444443222346789999999999999999999876
No 260
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.69 E-value=0.0069 Score=52.54 Aligned_cols=24 Identities=46% Similarity=0.879 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
...+|+|.|++|+||||+++.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999984
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.68 E-value=0.0092 Score=51.62 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
...++.|+|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999886543
No 262
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.67 E-value=0.0048 Score=52.45 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...|+|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34699999999999999999999764
No 263
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.66 E-value=0.0088 Score=50.16 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....|+|.|++|+||||+++.++..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998865
No 264
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.64 E-value=0.0063 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.++|.|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999988765
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.63 E-value=0.01 Score=55.34 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=27.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
...+++|.|+.|+|||||++.++..+... ...+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 46789999999999999999999877644 234444
No 266
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.62 E-value=0.0076 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.370 Sum_probs=21.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.+|+|.|++|+||||+++.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999985
No 267
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.58 E-value=0.018 Score=52.87 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
....+++|.|+.|+|||||++.++..+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 456689999999999999999999876544
No 268
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.58 E-value=0.011 Score=52.43 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+..|..++..+=....++.|+|++|+|||+|+.+++...
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555553222346789999999999999999999863
No 269
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.58 E-value=0.025 Score=51.92 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...++.+.|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46788899999999999999999887654
No 270
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.56 E-value=0.0058 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999988764
No 271
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.56 E-value=0.0069 Score=55.75 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+.+|+|.|++|+||||+++.++.++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998865
No 272
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.55 E-value=0.0086 Score=55.23 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+.+|+|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999887544
No 273
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.54 E-value=0.029 Score=46.37 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999988654
No 274
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.52 E-value=0.014 Score=49.80 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...++++.|.+|+||||++..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 367888999999999999999998776
No 275
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.51 E-value=0.0089 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.+.|+|.|++|+||||+|..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999999999999985
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.50 E-value=0.0077 Score=50.90 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+++|.|+.|+|||||++.++--+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998753
No 277
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.47 E-value=0.011 Score=53.33 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 446689999999999999999999864
No 278
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.46 E-value=0.019 Score=54.60 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=36.1
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
...+.|....+.+.+.+.........|++.|++|+||||+++.+...+..
T Consensus 349 p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 34555666666666666322334568999999999999999999998653
No 279
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.45 E-value=0.0023 Score=57.40 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=26.2
Q ss_pred HHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 40 IESLLGVESKGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 40 l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+.+..- ...+.++|.|++|+|||+|+.++++...
T Consensus 165 aID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 165 LIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhhhcccc-cCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 34445432 2344578999999999999999988754
No 280
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.43 E-value=0.0098 Score=50.22 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+..|+|.|+.|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999999874
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.41 E-value=0.007 Score=51.06 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|+.|+|||||++.++.-+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998754
No 282
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0099 Score=47.97 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|++|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 283
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.38 E-value=0.015 Score=47.72 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=24.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCc
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDF 79 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~ 79 (362)
..|+|-|+-|+||||+++.+.+.+...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~ 30 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence 4689999999999999999999986543
No 284
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.37 E-value=0.009 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+....++|+|++|+|||||++.++.-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345679999999999999999998865
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.36 E-value=0.0089 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 286
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.36 E-value=0.015 Score=50.99 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=28.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...++|+|+|-||+||||++..++..+...-..+..+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678888899999999999999998765533344443
No 287
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.35 E-value=0.0073 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 288
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.34 E-value=0.016 Score=50.51 Aligned_cols=29 Identities=24% Similarity=0.242 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45788899999999999999999887654
No 289
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.33 E-value=0.021 Score=52.49 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=32.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHhhcCcc----cceeeecccccccCCCchHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHKISGDFE----CSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
.++|.|++|+|||+|+.++++....+.+ .+++.. + ........++.+.+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~-i---GeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAA-I---GITFEEAEFFMEDFRQ 207 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEE-E---EECHHHHHHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEE-e---cCCcHHHHHHHHHHhh
Confidence 4689999999999999998887543222 344443 2 2224456666666544
No 290
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.33 E-value=0.0078 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|+.|+|||||++.++--+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35578999999999999999987653
No 291
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.33 E-value=0.012 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..|+|.|++|+|||||+..+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999863
No 292
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.32 E-value=0.012 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+-|+|.|++|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999874
No 293
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=95.31 E-value=0.016 Score=53.87 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=30.8
Q ss_pred eEEEEEEcCCCchHHHHHH-HHHHHhhcCccc-ceeeecccccccCCCchHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIAR-AIFHKISGDFEC-SCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
.+.++|.|++|+|||+|+. .+++.. . .+. ++++. ..+......++.+.+..
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~-~-~dv~~V~~~----iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK-G-QDVICIYVA----IGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG-S-CSEEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh-c-CCcEEEEEE----CCCcchHHHHHHHHHhh
Confidence 3457899999999999965 555543 2 342 34443 22224455666666644
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.30 E-value=0.0069 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.106 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++-.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999998765
No 295
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.30 E-value=0.01 Score=48.07 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.-.++|.|+.|+|||||++.++..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999875
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.30 E-value=0.019 Score=61.40 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=29.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...++.|+|++|+|||||+.+++......-..++|+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3568999999999999999999998765434555654
No 297
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.27 E-value=0.008 Score=48.27 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~ 73 (362)
-|+|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999886
No 298
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.26 E-value=0.0085 Score=54.63 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=27.2
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+..|...|..+=....++.|.|++|+|||||+..++..
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34455555322233568999999999999999988754
No 299
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.26 E-value=0.01 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.-.++|.|+.|+|||||++.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999875
No 300
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.25 E-value=0.0094 Score=59.64 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=38.5
Q ss_pred CCcccccchHHHHHHHhccC-----------CCCeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 28 NQLVGVESTVDEIESLLGVE-----------SKGVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
+.++|-+...+.|.+.+.-. -...+.++++|++|+|||+||+.++..+...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45788888888888766421 1234568899999999999999999987543
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.25 E-value=0.01 Score=51.00 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 302
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.21 E-value=0.031 Score=49.78 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....+++|.|++|+|||||+..++..+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45778999999999999999999876543
No 303
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.20 E-value=0.0091 Score=51.18 Aligned_cols=26 Identities=23% Similarity=0.182 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|+.|+|||||++.++--+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34588999999999999999987653
No 304
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.0048 Score=59.48 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=34.8
Q ss_pred CCcccccchHHHHHHHhccCCC---------CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 28 NQLVGVESTVDEIESLLGVESK---------GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~---------~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+.++|.+...+.+.-.+..+.. +...|+++|++|+|||+||+.++..+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 4589999877766555542210 01158999999999999999998865
No 305
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.17 E-value=0.0094 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998764
No 306
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.15 E-value=0.012 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 307
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.15 E-value=0.013 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
....|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999999999865
No 308
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=95.13 E-value=0.026 Score=52.31 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=30.4
Q ss_pred eEEEEEEcCCCchHHHHHH-HHHHHhhcCcccceeeecccccccCCCchHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIAR-AIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
.+.++|.|++|+|||+|+. .+++. ......++|+. ..+......++.+.+..
T Consensus 162 GQR~~Ifg~~g~GKT~l~l~~I~n~-~~~dv~~V~~~----IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 162 GQRELIIGDRQTGKTALAIDAIINQ-RDSGIKCIYVA----IGQKASTISNVVRKLEE 214 (513)
T ss_dssp TCBCEEEESSSSSHHHHHHHHHHTT-SSSSCEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred CCEEEeecCCCCCcchHHHHHHHhh-ccCCceEEEEE----ecCChHHHHHHHHHHhh
Confidence 3457899999999999964 44443 32222244443 22224455666666543
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.12 E-value=0.0096 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|+.|+|||||++.++.-+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34589999999999999999997653
No 310
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.12 E-value=0.01 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
...+++|.|+.|+|||||++.++--+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987653
No 311
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.11 E-value=0.031 Score=49.84 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.....+++|.|++|+|||||+..++..+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 355778999999999999999999877643
No 312
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.10 E-value=0.01 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999998764
No 313
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.08 E-value=0.01 Score=51.19 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++.-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998765
No 314
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.07 E-value=0.023 Score=52.86 Aligned_cols=51 Identities=27% Similarity=0.246 Sum_probs=30.8
Q ss_pred eEEEEEEcCCCchHHHHHH-HHHHHhhcCccc-ceeeecccccccCCCchHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIAR-AIFHKISGDFEC-SCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
.+.++|.|++|+|||+|+. .+++.. . .+. ++++. ..+......++.+.+..
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~-~-~dv~~V~~~----IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK-G-QGVYCIYVA----IGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT-T-TTEEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh-c-CCcEEEEEE----cCCCcHHHHHHHHHHHh
Confidence 3457899999999999965 555543 2 343 34443 22224456666666644
No 315
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.06 E-value=0.01 Score=50.31 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++.-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998765
No 316
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.06 E-value=0.0088 Score=49.53 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|+.|+|||||++.++--+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999987753
No 317
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.06 E-value=0.01 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 318
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.06 E-value=0.01 Score=54.24 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....++|.|+.|+|||||++.++..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34568999999999999999999874
No 319
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.05 E-value=0.022 Score=47.61 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4679999999999999999999988653
No 320
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.04 E-value=0.011 Score=49.53 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+++|.|+.|+|||||++.++.-+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45789999999999999999987643
No 321
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.03 E-value=0.011 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 457899999999999999999764
No 322
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.01 E-value=0.016 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...|+|.|++|+|||||+..++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999874
No 323
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.99 E-value=0.017 Score=52.19 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=55.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhC
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLS 127 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 127 (362)
.....++|+|++|+||||+++.++..+... -..++++........ .... . +..+...+.+...-...+...+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~~-~----~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK-S----IVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCSS-S----EEEEEEBTTTBSCSHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccCc-e----EEEeeecCCCHHHHHHHHHHHhh
Confidence 346689999999999999999998876433 122222211000000 0000 0 00000000011111234666666
Q ss_pred CceEEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 128 RMKVLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 128 ~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
..|-++++|++.+.+......... ..+..++.|+...
T Consensus 208 ~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 208 EDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred hCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 778899999997655544433322 2234455555543
No 324
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.99 E-value=0.036 Score=46.57 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=24.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...|+|.|+.|+||||+++.+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999988654
No 325
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.97 E-value=0.041 Score=45.46 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
..|++.|+.|+||||+++.+.+.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 478999999999999999999988654
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.96 E-value=0.019 Score=44.87 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999999874
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.96 E-value=0.011 Score=50.71 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457899999999999999998764
No 328
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.96 E-value=0.016 Score=47.48 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+|+|.|+.|+||||+++.++.++.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999874
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.96 E-value=0.014 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 330
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.94 E-value=0.021 Score=47.54 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
.....|+|.|+.|+||||+++.+.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34678999999999999999999998865
No 331
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.93 E-value=0.012 Score=49.93 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+++|.|+.|+|||||++.++--+.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45789999999999999999877543
No 332
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.93 E-value=0.048 Score=51.17 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=33.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKL 105 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (362)
.+.++|.|++|+|||+|+.++++.. +.+.++++- ..+......++.+.+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~----iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIG----CGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEE----CCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEE----ecccHHHHHHHHHHH
Confidence 4467899999999999999987752 334555554 333355666666665
No 333
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.93 E-value=0.012 Score=47.11 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037416 54 LGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+.|+|++|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999876
No 334
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.92 E-value=0.017 Score=45.69 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999864
No 335
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.92 E-value=0.013 Score=52.44 Aligned_cols=24 Identities=38% Similarity=0.324 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.||.|+|||||++.++--
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 457899999999999999999874
No 336
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.90 E-value=0.012 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....++|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34678999999999999999998775
No 337
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.90 E-value=0.037 Score=49.49 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 47 ESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 47 ~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
......+++..|-||+||||++..++..+...-..+..+
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlv 60 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIV 60 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEE
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 345677888999999999999999998876553333333
No 338
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.88 E-value=0.022 Score=52.99 Aligned_cols=53 Identities=23% Similarity=0.154 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCchHHHHHH-HHHHHhhc------Cccc-ceeeecccccccCCCchHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIAR-AIFHKISG------DFEC-SCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
.+.++|.|++|+|||+||. .+++.... +.+. ++++. ..+......++.+.+..
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~----IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVA----IGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEE----ESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEE----CCCCcHHHHHHHHHHHh
Confidence 3457899999999999954 55555441 2343 44443 22224455666666644
No 339
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.86 E-value=0.027 Score=48.25 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=26.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
++|+|.|-||+||||++..++..+...-..+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 46777899999999999999998765433344443
No 340
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.85 E-value=0.025 Score=55.21 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=26.9
Q ss_pred hHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 36 TVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 36 el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
+.+.+...|. .....+|+||+|+|||+.+.++...+..
T Consensus 194 Q~~AV~~al~----~~~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 194 QKEAVLFALS----QKELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp HHHHHHHHHH----CSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc----CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3445666664 2347889999999999887777666533
No 341
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.85 E-value=0.021 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345889999999999999998764
No 342
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.85 E-value=0.014 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHh
Q 037416 53 ALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.++|.|+.|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 343
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.85 E-value=0.013 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|+.|+|||||++.++--+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999999999987754
No 344
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.84 E-value=0.013 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|+.|+|||||++.++.-+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 345
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.83 E-value=0.017 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|+|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998864
No 346
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.83 E-value=0.018 Score=47.54 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|++|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 347
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.81 E-value=0.018 Score=44.93 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037416 54 LGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~ 74 (362)
|+|.|.+|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
No 348
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.80 E-value=0.029 Score=50.20 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....|+|.|++|+|||||...+...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 4678999999999999999999986543
No 349
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=94.80 E-value=0.025 Score=52.18 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=33.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcC----cccceeeecccccccCCCchHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGD----FECSCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
+.++|.|++|+|||+|+..++....-+ -+.+++.. .........++.+.+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~----iGER~~Ev~e~~~~~~~ 208 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA----MGITNEEAQYFMSDFEK 208 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE----EEECHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE----ccCCcHHHHHHHHHHHh
Confidence 346788999999999999999875421 13444443 22224456666666654
No 350
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.79 E-value=0.012 Score=51.48 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....++|+|+.|+|||||++.++.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 3457999999999999999988764
No 351
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.77 E-value=0.025 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...-|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556899999999999999999875
No 352
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.77 E-value=0.017 Score=45.23 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999999864
No 353
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.75 E-value=0.018 Score=44.96 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999999874
No 354
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.75 E-value=0.015 Score=51.86 Aligned_cols=25 Identities=28% Similarity=0.170 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3457899999999999999999875
No 355
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.75 E-value=0.0097 Score=50.99 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....|+|.|+.|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999998764
No 356
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.75 E-value=0.03 Score=53.60 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+|+|.|++|+||||+++.+.+.+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 456799999999999999999999875
No 357
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.73 E-value=0.018 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|+|.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 358
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.017 Score=45.32 Aligned_cols=22 Identities=18% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.72 E-value=0.017 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.||.|+|||||++.++--
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 3457899999999999999999875
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.72 E-value=0.028 Score=44.90 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|++|+|||||+..+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4566889999999999999998764
No 361
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.72 E-value=0.017 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3457899999999999999999875
No 362
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.71 E-value=0.025 Score=49.57 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=25.7
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
+++|.+.+. ..+++|.|++|+|||||++.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 555655553 3478899999999999999998 54
No 363
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.71 E-value=0.017 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3457899999999999999999874
No 364
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.70 E-value=0.019 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|++|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34889999999999999999875
No 365
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.70 E-value=0.019 Score=45.45 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|++|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 445889999999999999999864
No 366
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.68 E-value=0.019 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999988774
No 367
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.67 E-value=0.016 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+|+|.|+.|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998875
No 368
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.67 E-value=0.03 Score=52.96 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
..+.+|++.|.+|+||||+++.++..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999998864
No 369
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.67 E-value=0.019 Score=44.80 Aligned_cols=22 Identities=27% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|+|.|.+|+|||||+..+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 370
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.67 E-value=0.019 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999999875
No 371
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.64 E-value=0.018 Score=45.08 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~ 73 (362)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999864
No 372
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.64 E-value=0.018 Score=51.86 Aligned_cols=25 Identities=36% Similarity=0.263 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3457899999999999999999864
No 373
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.63 E-value=0.018 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 34889999999999999999864
No 374
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.62 E-value=0.019 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++++|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46789999999999999999998754
No 375
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.62 E-value=0.019 Score=51.42 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999999864
No 376
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.60 E-value=0.026 Score=50.00 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
..+++..|-||+||||++..++..+...-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 678888999999999999999998766533344443
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.58 E-value=0.019 Score=45.98 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|++|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999999875
No 378
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.039 Score=44.16 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+..+.+++. ...-.|+|.|.+|+|||||+..+...
T Consensus 5 ~~~~~~~~~---~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWRLFN---HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHHHHT---TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHHhcC---CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 334445332 44566899999999999999999853
No 379
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.58 E-value=0.027 Score=44.61 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...-|+|.|++|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998874
No 380
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.57 E-value=0.017 Score=49.48 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|+.|+|||||++.++--+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998654
No 381
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.57 E-value=0.022 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
+.++|.|++|+|||+|+.++++...
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CEEEEecCCCCCchHHHHHHHHHHH
Confidence 3467899999999999999888753
No 382
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.57 E-value=0.02 Score=46.21 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999764
No 383
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.57 E-value=0.016 Score=53.79 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCchHHHHHH-HHHHHhhcCccc-ceeeecccccccCCCchHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIAR-AIFHKISGDFEC-SCFLENVREESQRPGGLACLRQKLLS 107 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (362)
.+.++|.|++|+|||+|+. .+++.. . .+. ++++. ..+......++.+.+..
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~-~-~dv~~V~~~----iGeR~~Ev~~~~~~~~~ 215 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ-G-QNVICVYVA----IGQKASSVAQVVTNFQE 215 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC-T-TTCEEEEEE----ESCCHHHHHHHHHHTGG
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh-c-CCcEEEEEE----cCCCchHHHHHHHHHHh
Confidence 4457899999999999965 555543 2 343 34443 22223445556555543
No 384
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.57 E-value=0.02 Score=45.78 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.+.+|+|+.|+|||||+..++.-+.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3789999999999999999887653
No 385
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.55 E-value=0.021 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 345889999999999999998874
No 386
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.54 E-value=0.035 Score=49.56 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.7
Q ss_pred CCCeEEEEEEcCCCchHHHHHHHHHHHhh--cCcccceeee
Q 037416 48 SKGVYALGIWGISGIGKTAIARAIFHKIS--GDFECSCFLE 86 (362)
Q Consensus 48 ~~~~~~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~ 86 (362)
....+++++.|-||+||||++..++..+. ..-..+..+.
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34568999999999999999999998876 4433444443
No 387
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.54 E-value=0.016 Score=50.47 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..+++|.|+.|+|||||++.++.-+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999988754
No 388
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.53 E-value=0.021 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999999864
No 389
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.53 E-value=0.018 Score=45.01 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~ 73 (362)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 378999999999999998864
No 390
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.53 E-value=0.017 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999874
No 391
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.51 E-value=0.015 Score=52.06 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457899999999999999999864
No 392
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.51 E-value=0.02 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.--|+|.|.+|+|||+|+..++.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999999885
No 393
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.48 E-value=0.023 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..|+|.|.+|+|||||...++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999864
No 394
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.47 E-value=0.033 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|.+|+|||||+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999764
No 395
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.47 E-value=0.038 Score=49.05 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
...+++++.|-||+||||++..++..+...-..+..+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678899999999999999999998866534444444
No 396
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.46 E-value=0.021 Score=51.14 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...+++|.|+.|+|||||++.++--
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3468999999999999999988764
No 397
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.46 E-value=0.034 Score=48.24 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=25.7
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
++|+|.|-||+||||++..++..+...-..+..+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 5677799999999999999999876542233333
No 398
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.45 E-value=0.027 Score=50.78 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...++|.|+.|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999988754
No 399
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.44 E-value=0.021 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.239 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..+++|.|+.|+|||||++.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 457899999999999999999875
No 400
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.43 E-value=0.021 Score=45.85 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...|+|.|.+|+|||||+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999875
No 401
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.43 E-value=0.021 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...|+|.|++|+|||||+..+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 336889999999999999999874
No 402
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.42 E-value=0.038 Score=43.64 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345889999999999999999864
No 403
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.42 E-value=0.027 Score=46.65 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
...|++.|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457999999999999999999998865
No 404
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.41 E-value=0.023 Score=44.85 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999875
No 405
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.39 E-value=0.029 Score=53.75 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
.+.++|+|++|+||||++..+...+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4688999999999999999999877654
No 406
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.37 E-value=0.041 Score=47.25 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....|++.|.+|+|||||+..++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999864
No 407
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.37 E-value=0.024 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34789999999999999999874
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.36 E-value=0.024 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999874
No 409
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.36 E-value=0.023 Score=44.94 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 410
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.36 E-value=0.024 Score=47.02 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 037416 54 LGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~ 74 (362)
|+|.|.+|+|||+|+..+...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 778999999999999999864
No 411
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.34 E-value=0.024 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 445889999999999999999874
No 412
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.32 E-value=0.045 Score=51.64 Aligned_cols=37 Identities=11% Similarity=-0.075 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC-cccceeee
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD-FECSCFLE 86 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~ 86 (362)
...++.|.|++|+|||+|+.+++...... -..++|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 35689999999999999999999987543 33455554
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.30 E-value=0.025 Score=45.00 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445889999999999999999875
No 414
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.29 E-value=0.021 Score=45.77 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|+|.|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999874
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.29 E-value=0.024 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999999874
No 416
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.27 E-value=0.042 Score=46.91 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...-.|+|.|.+|+|||||+..+...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999874
No 417
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.27 E-value=0.026 Score=44.96 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35889999999999999998864
No 418
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.25 E-value=0.049 Score=52.85 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=25.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 52 YALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+.++|+||+|+|||+++..+...+.......+.++
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 46889999999999999888887654223344443
No 419
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.25 E-value=0.027 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345889999999999999999874
No 420
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.23 E-value=0.053 Score=43.89 Aligned_cols=29 Identities=14% Similarity=-0.084 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhcC
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISGD 78 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~ 78 (362)
...+.+++|+.|.||||.+...+.++...
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~ 35 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA 35 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999998887544
No 421
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.23 E-value=0.023 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....++|.|+.|+|||||++.++--
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 3568999999999999999998764
No 422
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.22 E-value=0.027 Score=44.87 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..-|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 345889999999999999999864
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.22 E-value=0.027 Score=44.71 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34789999999999999988864
No 424
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.026 Score=45.40 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
-|+|.|.+|+|||||+..+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999999875
No 425
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.028 Score=45.50 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445889999999999999999875
No 426
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.19 E-value=0.039 Score=46.50 Aligned_cols=33 Identities=24% Similarity=0.534 Sum_probs=25.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 54 LGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 54 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
|+|.|-||+||||++..++..+...-..+..+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999998866533344443
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.028 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 445889999999999999999874
No 428
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.026 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
--|+|.|.+|+|||+|+..++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4588999999999999999874
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.17 E-value=0.03 Score=46.66 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
-.++|.|++|+||||+++.+++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999876
No 430
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.16 E-value=0.044 Score=51.22 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
.....|++.|.+|+||||+++.++..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999998764
No 431
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.16 E-value=0.027 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.--|+|.|.+|+|||+|++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999997665543
No 432
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.16 E-value=0.02 Score=46.41 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
..--|+|.|.+|+|||||+..+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999999853
No 433
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.16 E-value=0.029 Score=44.55 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...-|+|.|.+|+|||||+..+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999854
No 434
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.16 E-value=0.037 Score=45.03 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..--|+|.|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999875
No 435
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.15 E-value=0.028 Score=45.41 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999999875
No 436
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.13 E-value=0.031 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
....|+|.|++|+|||||+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456688999999999999988874
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.11 E-value=0.029 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999999864
No 438
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.027 Score=45.98 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999874
No 439
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.09 E-value=0.028 Score=50.61 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
...++|.|++|+|||||++.++..+..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 347899999999999999999987543
No 440
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.09 E-value=0.034 Score=43.96 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..--|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998764
No 441
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.08 E-value=0.03 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 335889999999999999999864
No 442
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.08 E-value=0.037 Score=46.03 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=24.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
...+|+|.|+.|+||||+++.++.++.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999999864
No 443
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.08 E-value=0.03 Score=44.96 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 345889999999999999999875
No 444
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.07 E-value=0.029 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...|+|.|.+|+|||+|+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446889999999999999999875
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.029 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999875
No 446
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.05 E-value=0.035 Score=44.77 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....|+|.|.+|+|||+|+..+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34667899999999999999998764
No 447
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.02 E-value=0.032 Score=44.79 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 446889999999999999999864
No 448
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.01 E-value=0.031 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999875
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.00 E-value=0.038 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.186 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..--|+|.|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999875
No 450
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.99 E-value=0.019 Score=46.99 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|++|+|||||++.++..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999887653
No 451
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.98 E-value=0.046 Score=44.36 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..-|+|.|.+|+|||||+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 452
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.96 E-value=0.039 Score=46.32 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....|+|.|.+|+|||||+..++..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34567899999999999999999874
No 453
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.96 E-value=0.037 Score=49.39 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....++|.|+.|+|||||++.++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3457899999999999999999998653
No 454
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.95 E-value=0.03 Score=45.53 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999999874
No 455
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.95 E-value=0.042 Score=52.86 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhh
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKIS 76 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~ 76 (362)
....|+|.|.+|+||||+++.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999874
No 456
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.94 E-value=0.03 Score=45.47 Aligned_cols=25 Identities=24% Similarity=0.318 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...-|+|.|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456889999999999999999875
No 457
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.94 E-value=0.033 Score=45.20 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999999864
No 458
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.93 E-value=0.041 Score=42.60 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.++.+|+|+.|.|||++...++.-+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999998887654
No 459
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.93 E-value=0.033 Score=44.84 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 445899999999999999999874
No 460
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.92 E-value=0.034 Score=46.31 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.....|+|.|.+|+|||||+..++..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999774
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.89 E-value=0.056 Score=51.30 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 39 EIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 39 ~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.+...+...=....+++|.|++|+|||||+..++......-..++++.
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 344444322223568999999999999999999987654322334443
No 462
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.87 E-value=0.046 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHHHHh
Q 037416 52 YALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
.+++|.|++|+|||||++.++...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 478899999999999999998653
No 463
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.035 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999875
No 464
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.84 E-value=0.034 Score=45.17 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
..-|+|.|++|+|||||+..+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 44588999999999999999875
No 465
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.82 E-value=0.03 Score=45.38 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445889999999999999999864
No 466
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.79 E-value=0.033 Score=45.36 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999874
No 467
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.78 E-value=0.029 Score=45.60 Aligned_cols=24 Identities=17% Similarity=0.477 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 445889999999999999998764
No 468
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.76 E-value=0.028 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..--|+|.|.+|+|||||+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4556889999999999999999864
No 469
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.76 E-value=0.055 Score=44.03 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=25.3
Q ss_pred EEEEEE-cCCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 52 YALGIW-GISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 52 ~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
++|.|+ +-||+||||++..++..+...-..+..+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356665 68999999999999998866433444443
No 470
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.05 Score=43.84 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 445889999999999999999874
No 471
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.73 E-value=0.07 Score=48.45 Aligned_cols=48 Identities=27% Similarity=0.230 Sum_probs=37.2
Q ss_pred CCcccccchHHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 28 NQLVGVESTVDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 28 ~~~vGR~~el~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
..++|....+.++.+.+..-......|.|+|++|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 468999988888887776533333446999999999999998887754
No 472
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.72 E-value=0.027 Score=44.90 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446889999999999999999864
No 473
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.72 E-value=0.03 Score=49.67 Aligned_cols=88 Identities=17% Similarity=0.086 Sum_probs=48.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
...++|.|+.|+|||||++.++..+... ...+.+........ . .... .+ .+..+ ........+...+...|
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~-~-~~~~---~i--~~~~g-gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVF-K-HHKN---YT--QLFFG-GNITSADCLKSCLRMRP 241 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCC-S-SCSS---EE--EEECB-TTBCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeecccc-c-cchh---EE--EEEeC-CChhHHHHHHHHhhhCC
Confidence 3468999999999999999998876433 33444432211100 0 0000 00 00000 12223334667777888
Q ss_pred EEEEEeCCCCchhhhHh
Q 037416 131 VLIVFDDVTCFNQLESL 147 (362)
Q Consensus 131 ~llvlDd~~~~~~~~~l 147 (362)
-++++|+..+.+.++.+
T Consensus 242 ~ilildE~~~~e~~~~l 258 (330)
T 2pt7_A 242 DRIILGELRSSEAYDFY 258 (330)
T ss_dssp SEEEECCCCSTHHHHHH
T ss_pred CEEEEcCCChHHHHHHH
Confidence 89999999765444433
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.69 E-value=0.027 Score=49.24 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 037416 53 ALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 53 ~v~I~G~~GiGKTtLa~~~~~ 73 (362)
-|+|.|++|+|||||++.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999764
No 475
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.67 E-value=0.038 Score=49.38 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCCCeEEEEEEcCCCchHHHHHHHHHHHh
Q 037416 37 VDEIESLLGVESKGVYALGIWGISGIGKTAIARAIFHKI 75 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 75 (362)
++.|...+. ...++|.|++|+|||||+..++...
T Consensus 206 l~~L~~~~~-----G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 206 LKPLEEALT-----GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp HHHHHHHHT-----TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred HHHHHHhcC-----CCEEEEECCCCccHHHHHHHHhccc
Confidence 555655542 2478899999999999999988653
No 476
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.65 E-value=0.039 Score=45.10 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..-|+|.|.+|+|||||+..++..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999999864
No 477
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.64 E-value=0.038 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..-|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998874
No 478
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.62 E-value=0.043 Score=50.64 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....++|.|++|+|||||++.++.....
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4557899999999999999999887643
No 479
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.61 E-value=0.034 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.5
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
..--|+|.|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345589999999999999999865
No 480
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.61 E-value=0.036 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445889999999999999999864
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.60 E-value=0.039 Score=44.42 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
--|+|.|.+|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
No 482
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.58 E-value=0.046 Score=47.81 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 50 GVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 50 ~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
....|+|.|.+|+|||||+..+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567999999999999999999875
No 483
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.56 E-value=0.034 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+..+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345889999999999999876664
No 484
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.54 E-value=0.024 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=10.1
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999988754
No 485
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.52 E-value=0.041 Score=44.78 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 445889999999999999999764
No 486
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.50 E-value=0.093 Score=43.61 Aligned_cols=108 Identities=7% Similarity=-0.036 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHHhhcCcccceeeecccccccCCCchHHHHHHHHHHHhcCCCCCCchHHHHHhhCCce
Q 037416 51 VYALGIWGISGIGKTAIARAIFHKISGDFECSCFLENVREESQRPGGLACLRQKLLSNLLKDKNVIPYIDLNFRRLSRMK 130 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 130 (362)
..+.+++|+-|.||||.+...+.+.......++.+...... ... ..+...+..... .. .......+.... +.-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~---Ryg-~~i~sr~G~~~~-a~-~i~~~~di~~~~-~~~ 91 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT---RYS-SSFCTHDRNTME-AL-PACLLRDVAQEA-LGV 91 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC---CC------------CE-EE-EESSGGGGHHHH-TTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc---cch-HHHHhhcCCeeE-EE-ecCCHHHHHHHh-ccC
Confidence 56889999999999998887777765543333333322211 122 233333311100 00 111112233333 223
Q ss_pred EEEEEeCCCCchhhhHhhccCCCCCCCcEEEEEeCCh
Q 037416 131 VLIVFDDVTCFNQLESLIGSLDRLTPVSRIIITTRNK 167 (362)
Q Consensus 131 ~llvlDd~~~~~~~~~l~~~~~~~~~~~~ilitsr~~ 167 (362)
-+|++|++.-......+...+.. .+..||++.++.
T Consensus 92 dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 92 AVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp SEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred CEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence 49999998422224444444332 456799999873
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.49 E-value=0.043 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345889999999999999999874
No 488
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.47 E-value=0.039 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||||+..+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998764
No 489
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.46 E-value=0.041 Score=45.04 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 345889999999999999998864
No 490
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.45 E-value=0.043 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.392 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...|+|.|++|+||||+|.++..+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456899999999999999998774
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.45 E-value=0.042 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
.--|+|.|.+|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999998874
No 492
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.43 E-value=0.11 Score=44.71 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=32.9
Q ss_pred HHHHHHHhcc--CCCCeEEEEEEcC-CCchHHHHHHHHHHHhhcCcccceeee
Q 037416 37 VDEIESLLGV--ESKGVYALGIWGI-SGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 37 l~~l~~~l~~--~~~~~~~v~I~G~-~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
+..|...+.. .+...++|+|+|. +|+||||++..++..+......+..+.
T Consensus 66 ~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 66 FRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4444443332 2344678888875 899999999999998765434455554
No 493
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.40 E-value=0.081 Score=46.87 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=28.2
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhcCcccceee
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
+...++++.|-||+||||++..++..+...-..+..+
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4467788899999999999999999876553333333
No 494
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.40 E-value=0.047 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHHHH
Q 037416 52 YALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 52 ~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
..|+|.|++|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 495
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.39 E-value=0.047 Score=47.55 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHhccCCCCeEEEEEEc---CCCchHHHHHHHHHHHhhcCcccceee
Q 037416 37 VDEIESLLGVESKGVYALGIWG---ISGIGKTAIARAIFHKISGDFECSCFL 85 (362)
Q Consensus 37 l~~l~~~l~~~~~~~~~v~I~G---~~GiGKTtLa~~~~~~~~~~~~~~~~~ 85 (362)
+..+.+.+. .+.++++|.+ -||+||||++..++..+...-..+..+
T Consensus 23 ~~~~~r~~~---~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 23 LEELRRILS---NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHH---HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhc---CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 344444443 2334566654 999999999999998876542333333
No 496
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.37 E-value=0.071 Score=48.14 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=27.6
Q ss_pred CCeEEEEEEc-CCCchHHHHHHHHHHHhhcCcccceeee
Q 037416 49 KGVYALGIWG-ISGIGKTAIARAIFHKISGDFECSCFLE 86 (362)
Q Consensus 49 ~~~~~v~I~G-~~GiGKTtLa~~~~~~~~~~~~~~~~~~ 86 (362)
.+.++|+|+| -||+||||++..++..+......+..+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3467777765 9999999999999998765433444444
No 497
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.36 E-value=0.053 Score=47.58 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHH
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
+....|+|.|.+|+|||||+..+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45778999999999999999999874
No 498
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.35 E-value=0.049 Score=47.64 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCchHHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFHK 74 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~~ 74 (362)
...++|.|++|+||||+|..+..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457899999999999999999885
No 499
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.25 E-value=0.076 Score=43.62 Aligned_cols=29 Identities=14% Similarity=-0.111 Sum_probs=20.8
Q ss_pred CCeEEEEEEcCCCchHHHHHHHHHHHhhc
Q 037416 49 KGVYALGIWGISGIGKTAIARAIFHKISG 77 (362)
Q Consensus 49 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~ 77 (362)
....+.+|+|+-|.||||.+...+.++..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~ 54 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIY 54 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34578899999999999955544555443
No 500
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.25 E-value=0.057 Score=44.36 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCchHHHHHHHHHH
Q 037416 51 VYALGIWGISGIGKTAIARAIFH 73 (362)
Q Consensus 51 ~~~v~I~G~~GiGKTtLa~~~~~ 73 (362)
.-.|+|+|..|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 44799999999999999999876
Done!