BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037418
         (427 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter.
 pdb|2XUT|B Chain B, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter.
 pdb|2XUT|C Chain C, Crystal Structure Of A Proton Dependent Oligopeptide (Pot)
           Family Transporter
          Length = 524

 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 89  FYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFF-----SFCGVVLVPI 143
           FYT L LIA G  G    +  FM DQ  D   + ++ ++  +F+F     SF   + +P+
Sbjct: 112 FYTGLFLIALGSGGIKPLVSSFMGDQF-DQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170

Query: 144 IALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSYRRRKP 185
           + L  F       + FGIP +   VAT+ F  G   Y    P
Sbjct: 171 L-LKNFGA----AVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207


>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 723

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 118 SRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGT 177
           +  E +S    KL+  +F GV+L+ +   I+ PY    ++   +PAIF    + +F +  
Sbjct: 76  AEVEHLSRMKRKLYVAAFAGVLLLFLAHFISLPYEDFVQLLIALPAIF-YSGSSIFKAAF 134

Query: 178 CSYRRR 183
            + RRR
Sbjct: 135 SALRRR 140


>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
 pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
           P-Type Atpase Copper Transporter Copa
          Length = 645

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 121 EQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIKPWKIRFGIPAIFTVVATLVFLSGTCSY 180
           E +S    KL+  +F GV+L+ +   I+ PY    ++   +PAIF    + +F +   + 
Sbjct: 1   EHLSRMKRKLYVAAFAGVLLLFLAHFISLPYEDFVQLLIALPAIF-YSGSSIFKAAFSAL 59

Query: 181 RRR 183
           RRR
Sbjct: 60  RRR 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.144    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,328,367
Number of Sequences: 62578
Number of extensions: 423068
Number of successful extensions: 838
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 3
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)