Query 037418
Match_columns 427
No_of_seqs 162 out of 1312
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:40:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 1.5E-25 5.1E-30 231.6 18.4 397 2-426 21-438 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 1.5E-22 5.2E-27 207.2 28.9 369 2-426 22-419 (491)
3 3o7q_A L-fucose-proton symport 99.5 4.3E-12 1.5E-16 127.0 25.6 158 3-174 36-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.4 9.3E-12 3.2E-16 124.9 19.8 151 10-173 45-203 (451)
5 2gfp_A EMRD, multidrug resista 99.2 1.8E-11 6.2E-16 120.2 7.5 141 17-171 24-169 (375)
6 4gc0_A D-xylose-proton symport 98.9 3.5E-08 1.2E-12 100.1 19.1 115 29-151 56-184 (491)
7 2cfq_A Lactose permease; trans 98.8 1.8E-09 6.1E-14 108.2 3.5 145 14-166 29-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.8 7.2E-08 2.5E-12 96.3 15.0 160 5-175 264-432 (451)
9 3o7q_A L-fucose-proton symport 98.7 1.1E-07 3.7E-12 94.8 14.2 154 6-174 271-430 (438)
10 2cfq_A Lactose permease; trans 98.3 1.4E-06 4.7E-11 87.0 10.3 148 14-175 242-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.3 9.6E-07 3.3E-11 89.5 7.6 161 10-178 300-473 (491)
12 4gc0_A D-xylose-proton symport 98.1 2.9E-05 9.9E-10 78.4 13.5 164 15-194 299-475 (491)
13 2gfp_A EMRD, multidrug resista 97.6 3.3E-05 1.1E-09 75.1 4.5 147 7-166 213-366 (375)
14 2xut_A Proton/peptide symporte 95.9 0.0055 1.9E-07 62.1 4.9 87 85-178 404-504 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=1.5e-25 Score=231.63 Aligned_cols=397 Identities=17% Similarity=0.180 Sum_probs=253.5
Q ss_pred hhhHHHHHHhHH-HHHHHhhHhcC------CchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhh
Q 037418 2 FWADIFAAYAMW-VMITYLTNVWK------ISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSY 74 (427)
Q Consensus 2 ~~~eRfs~Yg~~-~l~~yl~~~l~------~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~ 74 (427)
.+.+++++|++. .+..|+++++| ++..+++.+.+.+.....++++++|+++||++|||+++.++.++..+...
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 467899999999 99999999999 99999999999999999999999999999966999999999888776221
Q ss_pred cCCCCCCCCc-hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhce
Q 037418 75 EYKPECIGEG-QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPY 151 (427)
Q Consensus 75 ~~~~~~~~~~-~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~ 151 (427)
.... .. +.+.++++..+.++|.|...|+..++++|.+++++. ....+.|+ +.+.|+|..+++.++++
T Consensus 101 ~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r------~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 101 FLAI----FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK------SLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHH----TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT------THHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHH----hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 12 567788899999999999999999999999976542 22355655 78899999999999888
Q ss_pred ec---cchhHhHHHHHHHHHHHHHHHhcccceeecCCCCChhHHHHHHHHHHHhhccCCCCCCCccccccCCccc-cccc
Q 037418 152 IK---PWKIRFGIPAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVFRVFVASALKLFYRIPRNASELYERDNVDE-IYVV 227 (427)
Q Consensus 152 l~---g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 227 (427)
+. ||++.|.+.++..+++.++++..++++++.+|++++..+..+.+..+.++++.+.+ +...+........ ....
T Consensus 171 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 249 (524)
T 2xut_A 171 LLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAYAL 249 (524)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHHTG
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhhhh
Confidence 75 99999999998888887777666555544444433333322232223222211000 0000000000000 0000
Q ss_pred ccCCCcchhhhhhccCCCccchhccCCcc-------cccchhhHHHHHhhccchhhhhhhHhhHhhhcccchhHHHHHHH
Q 037418 228 QHTRSLRCLDKAAIILPDKTLEQQEGNRW-------RLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTYFLEQADH 300 (427)
Q Consensus 228 ~~~~~~~~ld~a~~~~~~~~~~~~~~~~~-------~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~~~~qa~~ 300 (427)
.+.+....+..+....... .......|| +.++.++.+++|+.....++++....++..+.|..+.+..++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (524)
T 2xut_A 250 VNIPTLGIVAGLCCAMVLV-MGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQAND 328 (524)
T ss_dssp GGTTTTCSSHHHHHHHHHH-HHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhhh-hcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHh
Confidence 0000000000000000000 000011122 11222234556677777788888888999999988888877776
Q ss_pred hcCCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 037418 301 LNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRRLDVIRSHG 380 (427)
Q Consensus 301 ~d~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~~~~~~~~g 380 (427)
+|.+. + ++.+.+..++++..++..|+.+++..+..+|+++++++.+++.+|+++.+++++.++..+..+ +
T Consensus 329 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~-- 398 (524)
T 2xut_A 329 MVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM-----D-- 398 (524)
T ss_dssp SCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T--
T ss_pred cCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh-----c--
Confidence 66543 2 467778889999999999999987654444425567778889999999999888776543111 0
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418 381 LIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL 426 (427)
Q Consensus 381 ~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m 426 (427)
...+.+.+|+++.+++.++++.+..|...+.+.+.+|+++
T Consensus 399 ------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 438 (524)
T 2xut_A 399 ------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM 438 (524)
T ss_dssp ------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC
T ss_pred ------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 1124578899999999999999999999999999999875
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=1.5e-22 Score=207.18 Aligned_cols=369 Identities=14% Similarity=0.122 Sum_probs=252.6
Q ss_pred hhhHHHHHHhHH-HHHHHhhHh-----cCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhc
Q 037418 2 FWADIFAAYAMW-VMITYLTNV-----WKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYE 75 (427)
Q Consensus 2 ~~~eRfs~Yg~~-~l~~yl~~~-----l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~ 75 (427)
.+.++++||++. .+..|+++. +|.+..+++.+.+.+.....++.+++|+++||++|||+++.++.++..+....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 467999999999 999999998 99999999999999999999999999999999569999999999888772221
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec
Q 037418 76 YKPECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK 153 (427)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~ 153 (427)
.. ...+.+.++++..+.++|.|...|+..++++|.+++++.+ +...++ +.+.|+|..+++.+++++.
T Consensus 102 ~~----~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~~~~g~~~~~~~~~~l~ 170 (491)
T 4aps_A 102 LA----LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-------RDAGFSIFVFGINLGAFIAPLIVGAAQ 170 (491)
T ss_dssp HH----SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc-------ceeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0235667888999999999999999999999999875422 345555 7899999999999998876
Q ss_pred ---cchhHhHHHHHHHHHHHHHHHhcccceeecC--CCCChh--HHHHHHHHH-------------HHhhccCCCCCCCc
Q 037418 154 ---PWKIRFGIPAIFTVVATLVFLSGTCSYRRRK--PLGSPL--TTVFRVFVA-------------SALKLFYRIPRNAS 213 (427)
Q Consensus 154 ---g~~~~F~i~~v~~~i~~iif~~~~~~~~~~~--p~g~pl--~~~~~v~~~-------------a~~~~~~~~~~~~~ 213 (427)
||++.|.++++..++++++++..++++.+.+ +..++. .+..+.... ..... .....+.
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~- 248 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV-GWNSLPA- 248 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH-SSCCTTH-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc-cCccccc-
Confidence 9999999998888888777665544332221 111111 111110000 00000 0000000
Q ss_pred cccccCCcccccccccCCCcchhhhhhccCCCccchhccCCcccccchhhHHHHHhhccchhhhhhhHhhHhhhcccchh
Q 037418 214 ELYERDNVDEIYVVQHTRSLRCLDKAAIILPDKTLEQQEGNRWRLCRVTEIEETKGLLRMIPICLTFIIPGVVSSIGFTY 293 (427)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~~~~~l~l~~~~~~f~~~~~Q~~s~ 293 (427)
.. ... .......... .....|+.. ....+++|+.....++++....+|..+.|..+.
T Consensus 249 ~~----------~~~-----~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (491)
T 4aps_A 249 YI----------NLL-----TIVAIAIPVF-------YFAWMISSV-KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVV 305 (491)
T ss_dssp HH----------HHH-----HHHHHHHHHH-------HHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTH
T ss_pred ch----------hhh-----hHHHHHHHHH-------HHHHHhhcc-cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 00 000 0000000000 000011100 112245677777888998999999999998887
Q ss_pred HHHHHHH-hcCCCCCceecccchhhhhhHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037418 294 FLEQADH-LNRKVGKLSVPLPILLLFYDIARTQFTNLYAKFLNSFGESQSKKYAPAIGFATSMVLAILCCITAAKVETRR 372 (427)
Q Consensus 294 ~~~qa~~-~d~~~~~~~ip~~~~~~~n~i~ii~~~pl~~~~~~~~~~~~~~~~s~~~ki~iG~~l~~ls~l~~~~~~~~~ 372 (427)
+..+..+ .+.+ ..+.+.+..++++..++..|+..++..|+.+| ++...+++.+|+++.+++++.+......
T Consensus 306 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 377 (491)
T 4aps_A 306 LATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKN---QPSSPTKFAVGLMFAGLSFLLMAIPGAL- 377 (491)
T ss_dssp HHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC------CHHHHHHHHHHHHHHHTTTHHHHHH-
T ss_pred HHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 7666544 3332 15677888999999999999999988887665 4567889999999999999887765421
Q ss_pred HhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHhHhhhhhhHHHHHhcCCCCC
Q 037418 373 LDVIRSHGLIDKPDDKIPMSMFWLLPQFLLLGGFDGVCEVSIACFFIDQFPPLL 426 (427)
Q Consensus 373 ~~~~~~~g~~~~~~~~~~~s~~wlv~~y~l~~~gEl~~~~~~lef~~~~aP~~m 426 (427)
.+ ...+.+.+|+++.+++.++++.+..|...+++.+..|++.
T Consensus 378 ------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~ 419 (491)
T 4aps_A 378 ------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF 419 (491)
T ss_dssp ------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC
T ss_pred ------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH
Confidence 11 1234678899999999999999999999999999999874
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=4.3e-12 Score=126.97 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=120.4
Q ss_pred hhHHHHHHhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcC---CCC
Q 037418 3 WADIFAAYAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEY---KPE 79 (427)
Q Consensus 3 ~~eRfs~Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~---~~~ 79 (427)
+..-+.++....+..++.+++|.+..+.+.+.+.+.....++.++.|+++||+ ||||+++++.++..+..... .
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-- 112 (438)
T 3o7q_A 36 FLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPAA-- 112 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcc--
Confidence 33444444333556678889999999999999999999999999999999995 99999999998888721111 1
Q ss_pred CCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec----
Q 037418 80 CIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---- 153 (427)
Q Consensus 80 ~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---- 153 (427)
...+.+.++++..+.++|.|...|...++++|.+++++ |...++ ..+.++|..+++.+++++.
T Consensus 113 --~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 113 --EIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT---------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred --ccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 02457788899999999999999999999999987643 233333 6788999999988887663
Q ss_pred c-------------------------chhHhHHHHHHHHHHHHHHH
Q 037418 154 P-------------------------WKIRFGIPAIFTVVATLVFL 174 (427)
Q Consensus 154 g-------------------------~~~~F~i~~v~~~i~~iif~ 174 (427)
+ |++.|.+.++...+..++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 88999766665555544443
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.41 E-value=9.3e-12 Score=124.90 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=114.5
Q ss_pred HhHHHHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhh--hcCCCCCCCCchhH
Q 037418 10 YAMWVMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVS--YEYKPECIGEGQKI 87 (427)
Q Consensus 10 Yg~~~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~--~~~~~~~~~~~~~~ 87 (427)
+.+..+..++.+++ .+..+.+.+.+++.....++.+++|+++||+ |||++++++.++..+.. ....+.. ..+.+
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 120 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA--TSSIA 120 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSS
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhc--cccHH
Confidence 33343334445567 9999999999999999999999999999996 99999999998887721 1110000 12456
Q ss_pred HHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---c-chhHhHH
Q 037418 88 LFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---P-WKIRFGI 161 (427)
Q Consensus 88 ~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g-~~~~F~i 161 (427)
.++++..+.++|.|...|...++++|.+++++ |.+.+. ..+.++|.++++.+++++. | |++.|.+
T Consensus 121 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE---------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH---------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHCCchh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 78888999999999999999999999987543 344444 7888999999998888753 7 9999998
Q ss_pred HHHHHHHHHHHH
Q 037418 162 PAIFTVVATLVF 173 (427)
Q Consensus 162 ~~v~~~i~~iif 173 (427)
.++..++..++.
T Consensus 192 ~~~~~~~~~~~~ 203 (451)
T 1pw4_A 192 PAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766655444
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.19 E-value=1.8e-11 Score=120.19 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=112.0
Q ss_pred HHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHH
Q 037418 17 TYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFYTALGLI 96 (427)
Q Consensus 17 ~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 96 (427)
..+.+++|.+..+.+.+.+.+.....++.++.|+++||+ ||||++.++..+..+...... ...+.+.++.+..+.
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~l~ 98 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAV----TTSSLTVLIAASAMQ 98 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHH
Confidence 344567999999999999999999999999999999995 999999999888777221111 023567788889999
Q ss_pred HhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHhHHHHHHHHHHHH
Q 037418 97 AFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRFGIPAIFTVVATL 171 (427)
Q Consensus 97 ~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v~~~i~~i 171 (427)
++|.|...|...+++.|.+++++ |.+.++ ..+.++|..+++.+++++. ||+..|.+.++..++..+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQ---------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSS---------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhHHHHHHHHCCHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999876543 222333 6788999999999988876 899999887777655543
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.93 E-value=3.5e-08 Score=100.12 Aligned_cols=115 Identities=9% Similarity=-0.032 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHH-hh-hcCCCC------------CCCCchhHHHHHHHH
Q 037418 29 RAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSA-VS-YEYKPE------------CIGEGQKILFYTALG 94 (427)
Q Consensus 29 ~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~-~~-~~~~~~------------~~~~~~~~~~~~~l~ 94 (427)
..+.+.+++.....++++++|+++||+ |||++++++.+++.+ .+ ....+. .....+.+.+.++..
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~ 134 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHH
Confidence 344555566666678899999999995 999999999988877 11 111000 001346778999999
Q ss_pred HHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhce
Q 037418 95 LIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPY 151 (427)
Q Consensus 95 li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~ 151 (427)
+.++|.|+..+....+++|..+++. |......+ ..+.++|.+++......
T Consensus 135 l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~-~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 135 IGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFN-QFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhh-hhhhhhhhhhhhhcchh
Confidence 9999999999999999999876543 11122222 56777777777655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.79 E-value=1.8e-09 Score=108.18 Aligned_cols=145 Identities=9% Similarity=-0.118 Sum_probs=88.4
Q ss_pred HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHh-hhcCCCCCCCCchh-HHHHH
Q 037418 14 VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAV-SYEYKPECIGEGQK-ILFYT 91 (427)
Q Consensus 14 ~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 91 (427)
.+..|+++++|++..+++.+.+.+.....+.++++|+++||+ ||||+++++..+..+. .+...... .... ..+..
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 105 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVMFAPFFIFIF--GPLLQYNILV 105 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSCHHHHHHHTH--HHHHHTTCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 688899988999999999999999999999999999999995 9999999887765431 11100000 0000 00122
Q ss_pred HHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec--cchhHhHHHHHHH
Q 037418 92 ALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK--PWKIRFGIPAIFT 166 (427)
Q Consensus 92 ~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~--g~~~~F~i~~v~~ 166 (427)
++.+.+++.|...+...+...+. .++.+++ +...........++|..+++.+++++. +|+..|.+.++..
T Consensus 106 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~----~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 106 GSIVGGIYLGFCFNAGAPAVEAF-IEKVSRR----SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCA 177 (417)
T ss_dssp HHHGGGSSTTHHHHTTHHHHHHH-HHHHHHH----HTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH-HHHhhhh----cccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 33333344444433333433332 2111111 001111113566888888888888775 8999888766553
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.78 E-value=7.2e-08 Score=96.33 Aligned_cols=160 Identities=15% Similarity=0.082 Sum_probs=122.8
Q ss_pred HHHHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhccc-chHHHHHHHHHHHH-HhhhcCCCCCC
Q 037418 5 DIFAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTII-GNYWMLLVSSLAYS-AVSYEYKPECI 81 (427)
Q Consensus 5 eRfs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~l-Gr~~~i~~g~~~~~-~~~~~~~~~~~ 81 (427)
.-++++++. .+..|+++.+|++..+++.+...+.....+..+++|+++||+. |||+.+.++..+.. +.+..+. ..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 341 (451)
T 1pw4_A 264 VYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--MN 341 (451)
T ss_dssp HHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--SC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH--Hh
Confidence 446677777 7888998889999999999999999999999999999999942 88988888876665 3222221 00
Q ss_pred CCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHH-HHHHHhhhhceec---cc
Q 037418 82 GEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVL-VPIIALIAFPYIK---PW 155 (427)
Q Consensus 82 ~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNi-G~~i~~~~~~~l~---g~ 155 (427)
...+.+.+...+.+.+++.+...+...++..|.+++++ +...+. ....++ |..+++.+.+++. ||
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA---------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 01245666777888888889888888899999887643 334444 677888 9999999988875 89
Q ss_pred hhHhHHHHHHHHHHHHHHHh
Q 037418 156 KIRFGIPAIFTVVATLVFLS 175 (427)
Q Consensus 156 ~~~F~i~~v~~~i~~iif~~ 175 (427)
+..|.+.++..+++.++++.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777766654
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.73 E-value=1.1e-07 Score=94.81 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=113.8
Q ss_pred HHHHHhHH-HHHHH-hhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCC
Q 037418 6 IFAAYAMW-VMITY-LTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGE 83 (427)
Q Consensus 6 Rfs~Yg~~-~l~~y-l~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~ 83 (427)
-++++++. .+..| +++.+|++..+++.+...+.....+..+++|+++||+ |||+.+.++.++..+....... .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~----~ 345 (438)
T 3o7q_A 271 VGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLISAF----A 345 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH----c
Confidence 34556666 67788 8888899999999999999999999999999999995 9999999988877662221110 1
Q ss_pred chhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec---c-chhHh
Q 037418 84 GQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK---P-WKIRF 159 (427)
Q Consensus 84 ~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~---g-~~~~F 159 (427)
.+. .....+.+++++.+...|...++..|.++++ +. ....+ ....++|..+++.+.+++. | |+.+|
T Consensus 346 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 415 (438)
T 3o7q_A 346 GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD--TK------YGSSF-IVMTIIGGGIVTPVMGFVSDAAGNIPTAE 415 (438)
T ss_dssp CHH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG--HH------HHHHH-HHHTTHHHHHHHHHHHHHHHHHTSSGGGG
T ss_pred CCc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc------chhhH-HHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 122 2345567888999999999999988888754 11 23333 3355688889998888876 7 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 037418 160 GIPAIFTVVATLVFL 174 (427)
Q Consensus 160 ~i~~v~~~i~~iif~ 174 (427)
.+++++.++..+..+
T Consensus 416 ~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 416 LIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 988777665554433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.35 E-value=1.4e-06 Score=86.99 Aligned_cols=148 Identities=10% Similarity=0.004 Sum_probs=94.1
Q ss_pred HHHHHhhHhcCCc---hHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCCCCCCCCchhHHHH
Q 037418 14 VMITYLTNVWKIS---LVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYKPECIGEGQKILFY 90 (427)
Q Consensus 14 ~l~~yl~~~l~~~---~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (427)
.+..|+.+.++.. ....+...........+..+++|+++||+ |||+++..+..+..+....... ..+.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~ 316 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF----ATSALEVV 316 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT----CCSHHHHH
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH----hccHHHHH
Confidence 4455766655532 22333444444445556788999999995 9999998888777662211110 12334455
Q ss_pred HHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH---HHHHHHHHHHHhhhhceec---cchhHhHHHHH
Q 037418 91 TALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS---FCGVVLVPIIALIAFPYIK---PWKIRFGIPAI 164 (427)
Q Consensus 91 ~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~---Y~~iNiG~~i~~~~~~~l~---g~~~~F~i~~v 164 (427)
+...+.+++.+...+...++..|.++++. +.+.+. ..+.++|..+++.+.+++. ||+..|.+.++
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---------~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRF---------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHH---------HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHH---------HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 55556667777776777788888776532 222222 2455689999999888775 78888988888
Q ss_pred HHHHHHHHHHh
Q 037418 165 FTVVATLVFLS 175 (427)
Q Consensus 165 ~~~i~~iif~~ 175 (427)
..+++.++.+.
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777766543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.29 E-value=9.6e-07 Score=89.50 Aligned_cols=161 Identities=8% Similarity=-0.065 Sum_probs=110.6
Q ss_pred HhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHH-----HHHHHHHHhhhcCC-----C
Q 037418 10 YAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLL-----VSSLAYSAVSYEYK-----P 78 (427)
Q Consensus 10 Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~-----~g~~~~~~~~~~~~-----~ 78 (427)
+.+. .+..|+.+.++.+..+++.+.........+..++.|++.||+ |||+... ++..+..+....+. .
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY 378 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred hhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344 677788887888867777777777777778888899999995 8875443 56555555222111 0
Q ss_pred CCCCCchhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec--cch
Q 037418 79 ECIGEGQKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK--PWK 156 (427)
Q Consensus 79 ~~~~~~~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~--g~~ 156 (427)
......+.+.+..+..+.++|.+...|...++..|.++++... .-.+.+ +...++|.++++.+.+++. ++.
T Consensus 379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g------~~~g~~-~~~~~~g~~i~~~~~~~~~~~~~~ 451 (491)
T 4aps_A 379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS------QMMSMW-FLSSSVGSALNAQLVTLYNAKSEV 451 (491)
T ss_dssp CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS------SSTHHH-HHHHHHHHHHHHHHGGGGGGSSTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHhcccHH
Confidence 0011234566777888999999999999999999988765321 122333 6788999999999999887 888
Q ss_pred hHhHHHHHHHHHHHHHHHhccc
Q 037418 157 IRFGIPAIFTVVATLVFLSGTC 178 (427)
Q Consensus 157 ~~F~i~~v~~~i~~iif~~~~~ 178 (427)
..|.+.++..+++.++++...+
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 452 AYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777766665444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.08 E-value=2.9e-05 Score=78.38 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=97.4
Q ss_pred HHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHHHHHhhhcCC-CCCCCCchhHHHHHHH
Q 037418 15 MITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLAYSAVSYEYK-PECIGEGQKILFYTAL 93 (427)
Q Consensus 15 l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~l 93 (427)
...++.+..+.+..++............+..++++++.||+ |||+.++.+...+.+.+..+. ......... ...+++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~ 376 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSM 376 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTTCCHH-HHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcccchH-HHHHHH
Confidence 33445566788888887777777777888999999999995 999999988877766221110 000001121 222222
Q ss_pred HHHH-hhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---------cchhHhHH
Q 037418 94 GLIA-FGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---------PWKIRFGI 161 (427)
Q Consensus 94 ~li~-~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---------g~~~~F~i 161 (427)
.+.. ....+.-|....+.+|.++.+- |..... +...++|+++++.+.+++. ++...|.+
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~---------R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i 447 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAI---------RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 447 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTT---------HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2222 1122234566678899997653 344444 6777888888887777664 34455666
Q ss_pred HHHHHHHHHHHHHhcccceeecCCCCChhHHHH
Q 037418 162 PAIFTVVATLVFLSGTCSYRRRKPLGSPLTTVF 194 (427)
Q Consensus 162 ~~v~~~i~~iif~~~~~~~~~~~p~g~pl~~~~ 194 (427)
-++..+++.+...+. + .+.+|.++.++-
T Consensus 448 ~~~~~~~~~i~~~~~---~--PETkg~tLeei~ 475 (491)
T 4gc0_A 448 YGCMGVLAALFMWKF---V--PETKGKTLEELE 475 (491)
T ss_dssp HHHHHHHHHHHHHHH---C--CCCTTCCHHHHG
T ss_pred HHHHHHHHHHHHHhe---e--cCCCCCCHHHHH
Confidence 555555555443321 1 234566776643
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.62 E-value=3.3e-05 Score=75.13 Aligned_cols=147 Identities=7% Similarity=-0.107 Sum_probs=97.6
Q ss_pred HHHHhHH-HHHHHhhHhcCCchHHHHHHHHHHHHHHHHhhhHHHHhhhcccchHHHHHHHHHH-HHHhhhcCCCCCCCCc
Q 037418 7 FAAYAMW-VMITYLTNVWKISLVRAAAIVNFFWGTVLMLPLAIQYLVDTIIGNYWMLLVSSLA-YSAVSYEYKPECIGEG 84 (427)
Q Consensus 7 fs~Yg~~-~l~~yl~~~l~~~~~~A~~~~~~~~~~~y~~~~~GG~laD~~lGr~~~i~~g~~~-~~~~~~~~~~~~~~~~ 84 (427)
++++++. .+..|+++.+|++..+++.+.........+..++.|+++||. |+ .+..+... ....+...........
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (375)
T 2gfp_A 213 AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLLAGLLMWIPDWFGVM 289 (375)
T ss_dssp HHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH--HHHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4445555 556677777899999999999888888888888899999985 66 33334333 2221111100000012
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHH--HHHHHHHHHHHhhhhceec---cchhHh
Q 037418 85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFS--FCGVVLVPIIALIAFPYIK---PWKIRF 159 (427)
Q Consensus 85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~--Y~~iNiG~~i~~~~~~~l~---g~~~~F 159 (427)
+.+.+..+..+.+++.|...|...++..|..+ + + +.+.+. ....++|..+++.+.+.+. +|...|
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~---~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 359 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F---L------AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGL 359 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H---H------HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c---c------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 44556677888899999999999999998764 2 1 233443 5778899999888888775 677777
Q ss_pred HHHHHHH
Q 037418 160 GIPAIFT 166 (427)
Q Consensus 160 ~i~~v~~ 166 (427)
.+.++..
T Consensus 360 ~~~~~~~ 366 (375)
T 2gfp_A 360 LMTLMGL 366 (375)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.95 E-value=0.0055 Score=62.12 Aligned_cols=87 Identities=17% Similarity=0.115 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHhhcccccccccchhcccCCcchhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhceec-----cc----
Q 037418 85 QKILFYTALGLIAFGMSGHLVSIGGFMADQMTDSRAEQVSMRSAKLFFFSFCGVVLVPIIALIAFPYIK-----PW---- 155 (427)
Q Consensus 85 ~~~~~~~~l~li~~g~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~f~Y~~iNiG~~i~~~~~~~l~-----g~---- 155 (427)
+.+.+.++..+.++|.+...|...++..|..+++.. ....+.+ +...++|..+++.+.+++. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~------g~~~g~~-~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~ 476 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK------GTIMSFW-TLSVTVGNLWVLLANVSVKSPTVTEQIVQT 476 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC------TTTHHHH-GGGHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH------hHHHHHH-HHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455666788899999999999999999998876431 1123333 5677888888888888775 23
Q ss_pred -----hhHhHHHHHHHHHHHHHHHhccc
Q 037418 156 -----KIRFGIPAIFTVVATLVFLSGTC 178 (427)
Q Consensus 156 -----~~~F~i~~v~~~i~~iif~~~~~ 178 (427)
+..|.+.++..+++.++++...+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 477 GMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 23366666666666666655443
Done!