BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037419
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
           Regulatory Region Of Clostridium Perfringens
           Pyrophosphatase Complexed With Activator, Diadenosine
           Tetraphosphate
 pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
           Regulatory Region Of Clostridium Perfringens
           Pyrophosphatase Complexed With Activator, Diadenosine
           Tetraphosphate
          Length = 245

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 20  DMQELESHLIEKKMCRVSVSGNFIPQDLAIKIRKKTNRRVEILEIHEFSSNNNNIIEGHQ 79
           D  E+++ LIE K+  + V+G   P    I++ KK N  V       F+++         
Sbjct: 128 DRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTAS--------- 178

Query: 80  EQLLQDQRPQNQVMSSWNLIS 100
            +L+    P + VM+  NL++
Sbjct: 179 -RLIVQSLPVDYVMTKDNLVA 198


>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
           Regulatory Region Of Clostridium Perfringens
           Pyrophosphatase Complexed With The Inhibitor, Amp
 pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
           Regulatory Region Of Clostridium Perfringens
           Pyrophosphatase Complexed With The Inhibitor, Amp
          Length = 252

 Score = 28.1 bits (61), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 20  DMQELESHLIEKKMCRVSVSGNFIPQDLAIKIRKKTNRRVEILEIHEFSSNNNNIIEGHQ 79
           D  E+++ LIE K+  + V+G   P    I++ KK N  V       F+++         
Sbjct: 125 DRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTAS--------- 175

Query: 80  EQLLQDQRPQNQVMSSWNLIS 100
            +L+    P + VM+  NL++
Sbjct: 176 -RLIVQSLPVDYVMTKDNLVA 195


>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
           Synthase
          Length = 410

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 59  VEILEIHEFSSNNNNIIEGHQEQLLQDQRPQNQVMSSWNLISKQNPCATYVT 110
           VEI+ IH  SSN   I E   E+  Q+   +N  +    + +  NP  T +T
Sbjct: 141 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT 192


>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
 pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
          Length = 429

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 59  VEILEIHEFSSNNNNIIEGHQEQLLQDQRPQNQVMSSWNLISKQNPCATYVT 110
           VEI+ IH  SSN   I E   E+  Q+   +N  +    + +  NP  T +T
Sbjct: 156 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT 207


>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
           Aminoethoxyvinylglycine
 pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
           [2-(Amino-
           Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
          Length = 435

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 59  VEILEIHEFSSNNNNIIEGHQEQLLQDQRPQNQVMSSWNLISKQNPCATYVT 110
           VEI+ IH  SSN   I E   E+  Q+   +N  +    + +  NP  T +T
Sbjct: 158 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT 209


>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
           L-Vinylglycine
          Length = 473

 Score = 27.7 bits (60), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 59  VEILEIHEFSSNNNNIIEGHQEQLLQDQRPQNQVMSSWNLISKQNPCATYVT 110
           VEI+ IH  SSN   I E   E+  Q+   +N  +    + +  NP  T +T
Sbjct: 158 VEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMT 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,964,242
Number of Sequences: 62578
Number of extensions: 100565
Number of successful extensions: 197
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 10
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)