Query 037421
Match_columns 140
No_of_seqs 155 out of 781
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 12:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1687 NADH-ubiquinone oxidor 100.0 1.1E-36 2.3E-41 237.4 4.2 81 60-140 10-90 (168)
2 COG0377 NuoB NADH:ubiquinone o 100.0 7.4E-35 1.6E-39 233.8 2.3 76 65-140 19-94 (194)
3 PRK14818 NADH dehydrogenase su 100.0 3.9E-33 8.5E-38 221.4 4.3 77 64-140 13-89 (173)
4 CHL00023 ndhK NADH dehydrogena 100.0 1.6E-32 3.5E-37 225.1 4.7 76 65-140 15-90 (225)
5 PRK14813 NADH dehydrogenase su 100.0 2.3E-32 5E-37 219.4 4.3 76 65-140 11-86 (189)
6 PRK14817 NADH dehydrogenase su 100.0 2.2E-30 4.7E-35 206.9 4.4 78 63-140 16-94 (181)
7 PRK14816 NADH dehydrogenase su 100.0 2.5E-30 5.3E-35 206.7 3.8 76 65-140 24-100 (182)
8 PRK06411 NADH dehydrogenase su 100.0 2.7E-30 5.9E-35 206.5 3.8 76 65-140 18-93 (183)
9 PRK14814 NADH dehydrogenase su 100.0 5.5E-30 1.2E-34 205.3 3.9 77 64-140 15-92 (186)
10 PRK14815 NADH dehydrogenase su 100.0 1.3E-29 2.9E-34 202.7 4.2 76 65-140 16-92 (183)
11 TIGR01957 nuoB_fam NADH-quinon 100.0 1.6E-29 3.5E-34 195.5 3.7 74 67-140 2-76 (145)
12 PRK14820 NADH dehydrogenase su 100.0 3.1E-29 6.8E-34 200.0 3.8 77 64-140 15-92 (180)
13 PRK14819 NADH dehydrogenase su 99.9 5.5E-28 1.2E-32 201.8 4.0 76 64-139 13-89 (264)
14 PRK13292 trifunctional NADH de 99.9 3.1E-27 6.8E-32 219.9 4.3 76 65-140 5-81 (788)
15 COG3260 Ni,Fe-hydrogenase III 99.9 6.8E-24 1.5E-28 164.6 -0.0 60 81-140 6-68 (148)
16 PF01058 Oxidored_q6: NADH ubi 98.4 1E-07 2.2E-12 71.4 1.5 49 91-139 1-63 (131)
17 TIGR03294 FrhG coenzyme F420 h 96.4 0.0014 3.1E-08 53.5 1.5 54 85-138 6-67 (228)
18 PF00919 UPF0004: Uncharacteri 88.1 0.45 9.8E-06 34.3 2.5 40 84-128 2-43 (98)
19 PRK14332 (dimethylallyl)adenos 78.6 1.9 4.1E-05 38.4 2.9 42 82-128 11-54 (449)
20 PRK14334 (dimethylallyl)adenos 75.0 2.6 5.5E-05 37.2 2.7 39 84-127 3-43 (440)
21 PRK14329 (dimethylallyl)adenos 72.7 3.1 6.8E-05 37.1 2.7 43 82-129 24-68 (467)
22 PRK14327 (dimethylallyl)adenos 72.4 2.9 6.2E-05 38.3 2.4 46 78-128 63-110 (509)
23 PRK14333 (dimethylallyl)adenos 71.0 3.5 7.5E-05 36.4 2.6 42 82-128 7-50 (448)
24 PRK14326 (dimethylallyl)adenos 70.4 3.3 7.2E-05 37.5 2.4 41 82-127 14-56 (502)
25 PRK14340 (dimethylallyl)adenos 69.8 3.9 8.4E-05 36.4 2.6 41 83-128 8-50 (445)
26 PRK14335 (dimethylallyl)adenos 68.5 4.3 9.3E-05 36.1 2.6 41 83-128 2-44 (455)
27 PRK14338 (dimethylallyl)adenos 68.3 4.5 9.7E-05 36.0 2.7 41 83-128 22-64 (459)
28 TIGR01125 MiaB-like tRNA modif 66.4 5.9 0.00013 34.7 3.0 46 84-134 2-50 (430)
29 PRK14862 rimO ribosomal protei 65.9 5.7 0.00012 35.2 2.9 44 83-132 9-54 (440)
30 PRK14331 (dimethylallyl)adenos 63.3 6.5 0.00014 34.6 2.7 40 84-128 3-44 (437)
31 TIGR01578 MiaB-like-B MiaB-lik 62.5 6.8 0.00015 34.3 2.7 41 84-129 2-44 (420)
32 PRK14328 (dimethylallyl)adenos 61.6 7.4 0.00016 34.3 2.8 41 83-128 3-45 (439)
33 TIGR01574 miaB-methiolase tRNA 53.7 13 0.00028 32.8 2.9 40 84-128 2-44 (438)
34 PRK14336 (dimethylallyl)adenos 47.6 17 0.00038 31.9 2.8 42 83-129 3-46 (418)
35 PRK14330 (dimethylallyl)adenos 43.7 20 0.00044 31.4 2.6 41 83-128 2-44 (434)
36 PRK10468 hydrogenase 2 small s 39.6 24 0.00052 31.7 2.4 56 80-135 48-125 (371)
37 COG0621 MiaB 2-methylthioadeni 39.5 26 0.00057 31.9 2.7 40 83-127 4-46 (437)
38 TIGR00391 hydA hydrogenase (Ni 37.3 27 0.00058 31.3 2.4 57 79-135 49-127 (365)
39 TIGR00089 RNA modification enz 32.8 44 0.00095 29.1 3.0 40 84-128 2-43 (429)
40 PRK14337 (dimethylallyl)adenos 32.4 41 0.00088 29.8 2.7 40 83-128 5-46 (446)
41 PF12953 DUF3842: Domain of un 27.8 70 0.0015 25.0 3.0 69 66-139 14-92 (131)
42 TIGR01579 MiaB-like-C MiaB-lik 27.3 59 0.0013 28.2 2.8 38 87-129 2-41 (414)
43 COG1579 Zn-ribbon protein, pos 27.1 22 0.00047 30.0 0.1 35 66-100 174-209 (239)
44 COG1941 FrhG Coenzyme F420-red 27.0 55 0.0012 28.0 2.5 43 90-133 13-63 (247)
45 KOG4355 Predicted Fe-S oxidore 24.6 56 0.0012 30.5 2.2 41 82-128 55-97 (547)
46 PRK14325 (dimethylallyl)adenos 23.4 77 0.0017 27.9 2.8 42 83-129 5-48 (444)
47 PF04502 DUF572: Family of unk 22.0 45 0.00097 28.7 1.1 18 113-130 87-104 (324)
48 COG1844 Uncharacterized protei 20.3 39 0.00085 26.2 0.3 19 103-121 16-35 (125)
49 COG1072 CoaA Panthothenate kin 20.0 75 0.0016 27.7 2.0 52 79-130 137-195 (283)
No 1
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-36 Score=237.43 Aligned_cols=81 Identities=67% Similarity=1.253 Sum_probs=77.9
Q ss_pred CCCccchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhccc
Q 037421 60 GISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPAL 139 (140)
Q Consensus 60 ~~~~~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~L 139 (140)
+.++.+||++++||||+||+|+.||||++||++||++|||++.+||||+||||++||+||||||+|||+||+|+||+|+|
T Consensus 10 ~~s~~~e~~~a~ldDl~Nwar~~SlWPltfGlaCCavEmmh~~a~RyD~DRyGvvfRaSPRQaD~iivAGTlTnKMAPal 89 (168)
T KOG1687|consen 10 NPSSKAEYVLARLDDLLNWARRGSLWPLTFGLACCAVEMMHLAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPAL 89 (168)
T ss_pred CccchhhhhhhhHHHHhhhhhhcCccchhhhhHHHHHHHHHhccccccccccceeecCCCccccEEEEeccchhhhcHHH
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 037421 140 R 140 (140)
Q Consensus 140 r 140 (140)
+
T Consensus 90 r 90 (168)
T KOG1687|consen 90 R 90 (168)
T ss_pred H
Confidence 5
No 2
>COG0377 NuoB NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases [Energy production and conversion]
Probab=100.00 E-value=7.4e-35 Score=233.83 Aligned_cols=76 Identities=63% Similarity=1.104 Sum_probs=73.9
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++++++|+++||+|++||||++||++||+|||+++++++||+||||++|++||||||+|||+||+|+||+|+||
T Consensus 19 ~~~~~t~~~~l~~W~r~~SLWp~~fg~aCC~iEm~~~~~~r~D~~RfG~~~r~SPRQaDvmIvaGt~t~Kmap~lr 94 (194)
T COG0377 19 KGVLLTKVDKLINWGRKNSLWPVTFGLACCAVEMMATFASRYDLERFGEVPRASPRQADLMIVAGTLTNKMAPALR 94 (194)
T ss_pred cCeeeechHHHHhhhhhcccchhhhcchhHHHHHHhhccccccHHHhCcCCCCCcccccEEEEeccchHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=99.97 E-value=3.9e-33 Score=221.36 Aligned_cols=77 Identities=51% Similarity=0.841 Sum_probs=74.0
Q ss_pred cchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhcccC
Q 037421 64 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 64 ~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
..+++.+++|+++||+|++|+|++|||++||+|||+++.+|+||+|||||.|++||||||+|||+|+||+||+|+|+
T Consensus 13 ~~~~~~~~~~~~~~w~r~~Slw~~~~~t~cC~iEi~a~~~p~yD~eRfGi~~~aSPRhADvLlVtG~vT~km~~~l~ 89 (173)
T PRK14818 13 VTLLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERAR 89 (173)
T ss_pred EEeeehhhHHHHHHHHhhCCceeeEeCCccHHHHHHHhcCCccCHHHcCCeecCCcccccEEEEeCcCccccHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999874
No 4
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=99.97 E-value=1.6e-32 Score=225.06 Aligned_cols=76 Identities=41% Similarity=0.853 Sum_probs=73.4
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++.+++|+++||+|++|+||+|||++||+|||+++.+|+||+|||||+|++||||||+|||+|+||+||+|+|+
T Consensus 15 ~~~~~~~~~~~~~w~r~~Slw~~~~g~sCC~iE~~a~~~p~yDleRfGi~~~aSPRhADvliVtG~VT~km~~~L~ 90 (225)
T CHL00023 15 NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLV 90 (225)
T ss_pred CCeEeeeHHHHHHHHHhCCcccccCCcchHHHHHHHhCCCccCHHHcCCeecCCcccceEEEEecCCccccHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999874
No 5
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=99.97 E-value=2.3e-32 Score=219.45 Aligned_cols=76 Identities=57% Similarity=1.014 Sum_probs=73.2
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++.+++|+++||+|++|+||+|||++||+|||+++.+|+||+|||||.|++||||||+|||+|+||+||+++|+
T Consensus 11 ~~~~~~~~~~~~~w~r~~Slw~~~~~t~cC~iE~~a~~~p~yD~eRfGi~~~asPR~ADvllVtG~Vt~km~~~l~ 86 (189)
T PRK14813 11 HNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVV 86 (189)
T ss_pred CCeEeeeHHHHHHHHHhCCCceeeeCcccHHHHHHHhcccCCCHHHcCCeecCCcccceEEEEeccCchhhHHHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999999999999999874
No 6
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=99.96 E-value=2.2e-30 Score=206.90 Aligned_cols=78 Identities=38% Similarity=0.704 Sum_probs=72.8
Q ss_pred ccchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccc-cCCcccccEEEEccccccchhcccC
Q 037421 63 KTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIF-RPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 63 ~~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~-~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
...+++.+++|+++||+|++|+||+|||++||+|||+++.+|+||++|||+.+ ++||||||+|||+|+||+||+|+|+
T Consensus 16 ~~~~~~~~~~~~~~~w~r~~Slw~~~~~~~CC~iE~~a~~~~~yDleRfGi~~~~~sPR~ADillVeG~VT~~m~~~l~ 94 (181)
T PRK14817 16 EAEGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQADLLMVVGTVNCKQAPILQ 94 (181)
T ss_pred cCCCeehhhHHHHHHHHhhCCccccccccchHHHHHHHhcCccccHHHhceeeccCCCcceeEEEEEecCCccchHHHH
Confidence 34568889999999999999999999999999999999999999999999965 6999999999999999999998763
No 7
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=99.96 E-value=2.5e-30 Score=206.71 Aligned_cols=76 Identities=51% Similarity=1.017 Sum_probs=71.5
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccc-cCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIF-RPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~-~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++.+++|+++||+|++|+||+|||++||+|||+++.+|+||+||||+.+ ++||||||+|||+|+||++|+++|+
T Consensus 24 ~~~~~~~~~~~~~w~r~~slw~~~~~~~CC~iE~~a~~~p~yD~eRfGi~~~~~sPRhADvllVtG~VT~~m~~~l~ 100 (182)
T PRK14816 24 ANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFEVARASPRQADMIMVCGTITNKMAPVLK 100 (182)
T ss_pred CceeeeeHHHHHhhhhcCccceeeeCcchHHHHHHHhcCccccHHHhCccccCCCCCcceEEEEecCCcchhHHHHH
Confidence 467889999999999999999999999999999999999999999999965 5999999999999999999999863
No 8
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=99.96 E-value=2.7e-30 Score=206.45 Aligned_cols=76 Identities=67% Similarity=1.261 Sum_probs=73.4
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++.+++|+++||+|++|+||+|||++||+|||+++.+|+||++|||+.|++||||||+|||+|+||+||+++|+
T Consensus 18 ~~~~~~~~~~~~~w~r~~Slw~~~~~~~CC~iE~~~~~~~~yDieRfGi~~~~sPr~aDvllV~G~vt~~~~~~l~ 93 (183)
T PRK06411 18 KGVVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALR 93 (183)
T ss_pred CCeeeeeHHHHHHHHHhCCccceeeCccHhHHHHHHccCccccHHHhCccccCCCCceeEEEEEeCCCccchHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999874
No 9
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=99.96 E-value=5.5e-30 Score=205.27 Aligned_cols=77 Identities=44% Similarity=0.805 Sum_probs=73.2
Q ss_pred cchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCc-cccCCcccccEEEEccccccchhcccC
Q 037421 64 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 64 ~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi-~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
...++.+++|+++||+|++|+||+||+++||++||+++.+|+||++|||+ .|++||||||+|||+|+||+||+++|+
T Consensus 15 ~~~~~~~~~~~~~~w~r~~Slw~~~~~~~CC~iE~~~~~~~~yD~eRfGi~~~~~sPR~ADvllVtG~VT~~m~~~l~ 92 (186)
T PRK14814 15 GDMFQLGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLR 92 (186)
T ss_pred cCCeeeeeHHHHHHHHHhCCCceeeeCCccHHHHHHHhcCccccHHHhCccccCCCcccceEEEEeccCchhhHHHHH
Confidence 45788999999999999999999999999999999999999999999999 589999999999999999999999874
No 10
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=99.95 E-value=1.3e-29 Score=202.69 Aligned_cols=76 Identities=54% Similarity=1.004 Sum_probs=71.7
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccc-cCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIF-RPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~-~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++.+++++++||+|++|||++|||++||+|||+++++|+||++|||+.+ ++||||||++||+|+||+||++.|+
T Consensus 16 ~~~~~~~~~~~~~w~r~~Slw~~~~~~sCC~iE~~a~~~~~yDieRfGi~~~~~SPR~ADillVtG~VT~~m~~~l~ 92 (183)
T PRK14815 16 GNVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAEVMRFSPRQADVMIVAGTVTYKMALAVR 92 (183)
T ss_pred cCeehhhHHHHHHHHHhCCccceeEccchHHHHHHHhcCccccHHHhCcccCCCCCccccEEEEeCcCchhhHHHHH
Confidence 468889999999999999999999999999999999999999999999854 6999999999999999999999874
No 11
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=99.95 E-value=1.6e-29 Score=195.45 Aligned_cols=74 Identities=65% Similarity=1.205 Sum_probs=71.2
Q ss_pred hhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccC-ccccCCcccccEEEEccccccchhcccC
Q 037421 67 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFG-IIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 67 ~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfG-i~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
++.+++++++||+|++|+|++|||++||++|++++.+|+||+|||| +.+++||||||++||+|+||++|++.|+
T Consensus 2 ~~~~~~~~~~~~~r~~s~w~~~~~t~cC~iE~~~~~~~~~D~erfG~i~~~~sPr~aDvllVtG~vt~~~~~~l~ 76 (145)
T TIGR01957 2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGSEVFRASPRQADVMIVAGTVTKKMAPALR 76 (145)
T ss_pred cccccHHHHHhhhhcCCceeeeeCccHHHHHHHHccCccccHHHhCCceecCCCCcceEEEEecCCcHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999 8999999999999999999999999874
No 12
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=99.95 E-value=3.1e-29 Score=200.03 Aligned_cols=77 Identities=44% Similarity=0.851 Sum_probs=73.2
Q ss_pred cchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCc-cccCCcccccEEEEccccccchhcccC
Q 037421 64 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 64 ~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi-~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
..+++.+++|+++||+|++|+||+||+++||++||+++.+++||++|||+ .+++||||||+|||+|+||+||+++|+
T Consensus 15 ~~~~~~~~~~~~~~w~r~~Slw~~~~~~sCC~iE~~a~~~~~yDi~RfGi~~~~~sPR~aDillVeG~VT~~m~~~l~ 92 (180)
T PRK14820 15 GEGFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSERPSFSPRQADMLMVMGTIAKKMAPVLK 92 (180)
T ss_pred cCceEeeeHHHHHHHHhhCCCceeeecccHHHHHHHHhcCccccHHHhCccccCCCCccceEEEEEecCCcccHHHHH
Confidence 45788999999999999999999999999999999999999999999999 589999999999999999999999874
No 13
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=99.94 E-value=5.5e-28 Score=201.84 Aligned_cols=76 Identities=57% Similarity=1.083 Sum_probs=72.5
Q ss_pred cchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCc-cccCCcccccEEEEccccccchhccc
Q 037421 64 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPAL 139 (140)
Q Consensus 64 ~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi-~~~~SPRqADvLIVtGtVT~kMap~L 139 (140)
..+++.+++++++||+|++|+|++|||++||+||++++.+|+||++|||+ .|++||||||++||+|+||++|++.|
T Consensus 13 ~~~~~~~~~~~~~~W~r~~Slw~~~~gt~CC~iEila~l~p~yDieRFGi~~~~~sPRhADIlLVtG~VT~km~~~L 89 (264)
T PRK14819 13 KQGVLLTTVNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAELFRASPRQADLMIVAGTVTKKMAPQV 89 (264)
T ss_pred cCceeeeeHHHHHHHHHhCCcceeeeCCcccHHHHHHhccccccHHHhCcccccCCCCcceEEEEecCCchhhHHHH
Confidence 45688999999999999999999999999999999999999999999999 59999999999999999999998875
No 14
>PRK13292 trifunctional NADH dehydrogenase I subunit B/C/D; Provisional
Probab=99.93 E-value=3.1e-27 Score=219.86 Aligned_cols=76 Identities=49% Similarity=0.991 Sum_probs=72.8
Q ss_pred chhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCc-cccCCcccccEEEEccccccchhcccC
Q 037421 65 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 65 ~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi-~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
.+++.+++|+++||+|++|+||+|||++||+|||+++.+|+||+||||+ +|++||||||+|||+|+||+||+++|+
T Consensus 5 ~~~~~~~~~~~~~~~r~~s~w~~~~~~~cc~~E~~~~~~~~~D~~r~G~~~~~~sPr~aD~llv~G~vt~~~~~~l~ 81 (788)
T PRK13292 5 ENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREADLMVIAGTVFKKMAPSIL 81 (788)
T ss_pred CceeeeeHHHHHHHHhhCCCcceecCCccHHHHHHHhcCCcCCHHHcCCCccCCCcccceEEEEecCCcHhhHHHHH
Confidence 4688899999999999999999999999999999999999999999999 589999999999999999999999874
No 15
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=99.87 E-value=6.8e-24 Score=164.58 Aligned_cols=60 Identities=33% Similarity=0.664 Sum_probs=56.8
Q ss_pred hCCccceee---cCCchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccccchhcccC
Q 037421 81 RGSIWPMSF---GLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 81 ~~Slwp~~~---g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
++|+|+++. |||||+||+.++++|+||+|||||.+++||||||+|||||.||++|+..|+
T Consensus 6 ~rS~~v~~VdsG~CNgCdIEi~a~~sP~YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lk 68 (148)
T COG3260 6 KRSLHVYHVDSGGCNGCDIEILAALSPRYDAERFGIKVVNSPRHADILLVTGAVTRQMREPLK 68 (148)
T ss_pred ccceEEEEeccCCcCceeEEEeeccCcccchHHheeEEeCCCccccEEEEeccccHHHHHHHH
Confidence 789998887 499999999999999999999999999999999999999999999998774
No 16
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=98.40 E-value=1e-07 Score=71.39 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=42.7
Q ss_pred CCchHHHHhhhCCcchhh-----cccCccccCCcc---------cccEEEEccccccchhccc
Q 037421 91 LACCAVEMMHTGAARYDL-----DRFGIIFRPSPR---------QSDVMVVAGTLTNKMAPAL 139 (140)
Q Consensus 91 ~acC~iEm~a~~~p~yD~-----eRfGi~~~~SPR---------qADvLIVtGtVT~kMap~L 139 (140)
|+||.+||..+..+.+|+ .+||..+..+++ ++|++||+|.|+++|.+.+
T Consensus 1 C~GC~~s~~~~~~~~~dll~~i~~~~~~~l~~~~~~~~~~~~~~~~diliVeG~v~~~~~~~~ 63 (131)
T PF01058_consen 1 CTGCTISFLALEPSLLDLLELIEIRYHPSLMASPGEQDEENGEEEADILIVEGSVPRNMEEAL 63 (131)
T ss_dssp -SHHHHHHTTTTTTHHHHHHTEEEEEETTT-SS-HHHHHHHHTTTTEEEEEESBEETGGEEHH
T ss_pred CCCcHHHHhhCCCCHHHHHhhhHHHhCCEehhhcCCccccccccCceEEEEEeeccCCchHHH
Confidence 899999998899999999 999999999998 9999999999999987653
No 17
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=96.42 E-value=0.0014 Score=53.52 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=39.9
Q ss_pred cceeecCCchHHHHhhhCCcchhhcccCccccC-----Ccc---cccEEEEccccccchhcc
Q 037421 85 WPMSFGLACCAVEMMHTGAARYDLDRFGIIFRP-----SPR---QSDVMVVAGTLTNKMAPA 138 (140)
Q Consensus 85 wp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~-----SPR---qADvLIVtGtVT~kMap~ 138 (140)
|.---+|+||.+.++.+..+.+|+-+..|.++. +++ ++|+++|+|.|+++|.+.
T Consensus 6 ~~~~~~C~GC~~s~l~~~~~~~~ll~~~i~~~y~~~~~~~~~~~~~dil~VeG~i~~~~~~~ 67 (228)
T TIGR03294 6 YVHLSGCTGCLVSLTDNYEGLLDILDNIADLVYCQTLADAREIPEMDVALVEGSVCLQDEHS 67 (228)
T ss_pred EEECCCCCChHHHHHccCCcHHHHHHHhhHheecHhhhhhccCCCccEEEEeCCCCCCccHH
Confidence 444447999999999888888887766544442 223 499999999999887543
No 18
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=88.10 E-value=0.45 Score=34.32 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.7
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
++..+||| |-=+.|.+. ..+.+.|+..+..|.+||++||.
T Consensus 2 v~i~T~GC~~N~~Dse~i~-----~~l~~~G~~~~~~~e~AD~iiiN 43 (98)
T PF00919_consen 2 VYIETLGCQMNQYDSERIA-----SILQAAGYEIVDDPEEADVIIIN 43 (98)
T ss_pred EEEEECCCcccHHHHHHHH-----HHHHhcCCeeecccccCCEEEEE
Confidence 45677876 445555544 45778899999999999999874
No 19
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=78.63 E-value=1.9 Score=38.45 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=34.6
Q ss_pred CCccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 82 GSIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 82 ~Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
..+|..+||| |=.+.|.|. -.++..|+..+..|.+||++||.
T Consensus 11 ~~~~i~t~GC~~N~~dse~~~-----~~l~~~G~~~~~~~~~ADvviiN 54 (449)
T PRK14332 11 GKVYIETYGCQMNEYDSGIVS-----SLMRDAEYSTSNDPENSDIIFLN 54 (449)
T ss_pred CEEEEEecCCCCCHHHHHHHH-----HHHHHCcCEECCCcccCCEEEEE
Confidence 4588999998 788899887 34677888888899999999884
No 20
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=74.97 E-value=2.6 Score=37.19 Aligned_cols=39 Identities=15% Similarity=0.293 Sum_probs=32.1
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEE
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVV 127 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIV 127 (140)
++..+||| |=.+.|.+.- .+.+.|+..+..|.+||++||
T Consensus 3 ~~i~t~GC~~N~~ds~~~~~-----~l~~~G~~~~~~~~~ADi~ii 43 (440)
T PRK14334 3 AHIITYGCQMNEYDTHLVES-----ELVSLGAEIVDSVDEADFVLV 43 (440)
T ss_pred EEEEecCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEE
Confidence 67889997 7778887764 357789989999999999987
No 21
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=72.68 E-value=3.1 Score=37.11 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEcc
Q 037421 82 GSIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAG 129 (140)
Q Consensus 82 ~Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtG 129 (140)
+.++..+||| |=-+.|.|+-. +...|+..+..+.+||++||..
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~-----l~~~G~~~~~~~~~ADiviiNT 68 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASI-----LQMAGYNTTENLEEADLVLVNT 68 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHH-----HHHCcCEECCCcccCCEEEEeC
Confidence 4589999998 77888877643 5678888889999999999865
No 22
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=72.45 E-value=2.9 Score=38.25 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHHhCCccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 78 YIRRGSIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 78 W~R~~Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
-++.+.++..+||| |=-+.|.++- -+++.|+..+..+.+||++||-
T Consensus 63 ~~~~~~~~i~T~GC~~N~~Dse~~~~-----~L~~~Gy~~~~~~~~ADviiiN 110 (509)
T PRK14327 63 MGNGRKFYIRTYGCQMNEHDTEVMAG-----IFEALGYEPTDDTEDADVILLN 110 (509)
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHH-----HHHHCcCEECCCcCCCCEEEEE
Confidence 45567799999998 6777777654 3577899899999999999873
No 23
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=71.00 E-value=3.5 Score=36.44 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 82 GSIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 82 ~Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
++++..+||| |=-+.|.|.- .+.+.|+..+..+.+||++||-
T Consensus 7 ~~~~i~t~GC~~N~~ds~~~~~-----~l~~~G~~~~~~~~~ADiiiiN 50 (448)
T PRK14333 7 RSYWITTFGCQMNKADSERMAG-----ILEDMGYQWAEDELQADLVLYN 50 (448)
T ss_pred cEEEEEEcCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEE
Confidence 4789999997 6777777653 3678899889999999999873
No 24
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=70.41 E-value=3.3 Score=37.45 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.1
Q ss_pred CCccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEE
Q 037421 82 GSIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVV 127 (140)
Q Consensus 82 ~Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIV 127 (140)
+.++..+||| |=-+.|.|.- .+++.|+..+..+.+||++||
T Consensus 14 ~~~~i~T~GC~~N~~dse~~~~-----~L~~~G~~~~~~~e~ADvvvi 56 (502)
T PRK14326 14 RTYQVRTYGCQMNVHDSERLAG-----LLEAAGYVRAAEGQDADVVVF 56 (502)
T ss_pred CEEEEEecCCCCcHHHHHHHHH-----HHHHCCCEECCCcCCCCEEEE
Confidence 4689999998 7777787764 356678888999999999988
No 25
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=69.79 E-value=3.9 Score=36.38 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=32.4
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.++..+||| |=-+.|.|.- .+.+.|+..+.+|.+||++||-
T Consensus 8 ~~~i~tlGC~~N~~dse~~~~-----~l~~~G~~~~~~~~~ADviiiN 50 (445)
T PRK14340 8 KFYIHTFGCQMNQADSEIITA-----LLQDEGYVPAASEEDADIVLLN 50 (445)
T ss_pred EEEEEecCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEE
Confidence 478889997 6677776653 3567798889999999999983
No 26
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=68.47 E-value=4.3 Score=36.08 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=31.9
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.++..+||| |=-+.|.|.- .+.+.|+..+..|-+||++||-
T Consensus 2 ~~~i~t~GC~~N~~dse~~~~-----~l~~~G~~~~~~~~~ADv~iiN 44 (455)
T PRK14335 2 TYFFETYGCQMNVAESASMEQ-----LLLARGWTKAVDAETCDVLIIN 44 (455)
T ss_pred EEEEEEcCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEe
Confidence 367888987 6777787764 3567788889999999999873
No 27
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=68.30 E-value=4.5 Score=36.00 Aligned_cols=41 Identities=17% Similarity=0.296 Sum_probs=33.1
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.++..+||| |=.+.|.|.- .+...|+..+..|.+||++||-
T Consensus 22 ~~~i~t~GC~~N~~dse~~~~-----~l~~~G~~~~~~~~~AD~~iiN 64 (459)
T PRK14338 22 RYYVWTVGCQMNVSDSERLEA-----ALQGVGYSPAERPEDADFIVLN 64 (459)
T ss_pred EEEEEecCCCCCHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEe
Confidence 478889998 7788887764 3567788889999999999873
No 28
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=66.39 E-value=5.9 Score=34.66 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=33.3
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEcc-ccccc
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAG-TLTNK 134 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtG-tVT~k 134 (140)
+|..+||| |==+.|.+.- .+...|+..+..+.+||++||.. +||.+
T Consensus 2 ~~i~t~GC~~N~~ds~~~~~-----~l~~~g~~~~~~~~~aD~viinTC~v~~~ 50 (430)
T TIGR01125 2 IGFISLGCPKNLVDSEVMLG-----ILREAGYEVTPNYEDADYVIVNTCGFIED 50 (430)
T ss_pred EEEEECCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEeCCCccch
Confidence 57788887 5556665543 34667888888899999999986 56544
No 29
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=65.85 E-value=5.7 Score=35.16 Aligned_cols=44 Identities=30% Similarity=0.264 Sum_probs=33.8
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEccccc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLT 132 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtGtVT 132 (140)
.++..+||| |==+.|.|.-. ++..|+..+..|.+||++||. |.+
T Consensus 9 ~~~i~t~GC~~N~~dse~~~~~-----l~~~G~~~~~~~~~aD~ivin-TC~ 54 (440)
T PRK14862 9 KIGFVSLGCPKALVDSERILTQ-----LRAEGYEISPSYDGADLVIVN-TCG 54 (440)
T ss_pred EEEEEEcCCCCcHHHHHHHHHH-----HHHCcCEECCCcccCCEEEEe-ccc
Confidence 488889987 66677766543 566788888999999999997 443
No 30
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=63.31 E-value=6.5 Score=34.58 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=31.0
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
++..+||| |=-+.|.|.- -+.+.|+..+..+-+||++||.
T Consensus 3 ~~i~t~GC~~N~~ds~~~~~-----~l~~~G~~~~~~~~~aDviiiN 44 (437)
T PRK14331 3 YYIKTFGCQMNFNDSEKIKG-----ILQTLGYEPADDWEEADLILVN 44 (437)
T ss_pred EEEEecCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEe
Confidence 67788987 6677776653 2567888889999999999874
No 31
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=62.49 E-value=6.8 Score=34.33 Aligned_cols=41 Identities=15% Similarity=0.362 Sum_probs=30.2
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEcc
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAG 129 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtG 129 (140)
++..+||| |==+.|.|+- .+.+.|+.++..+..||++||.-
T Consensus 2 ~~~~t~GC~~N~~ds~~~~~-----~l~~~G~~~~~~~~~ADviiinT 44 (420)
T TIGR01578 2 VYVETYGCTLNNGDSEIMKN-----SLAAYGHELVNNAEEADLAILNT 44 (420)
T ss_pred EEEEecCCCCcHHHHHHHHH-----HHHHCCCEECCCcccCCEEEEEe
Confidence 45677887 5566666553 35778888888999999999754
No 32
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=61.61 E-value=7.4 Score=34.26 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=31.1
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.++..+||| |-=+.|.|.- .+...|+..+..+.+||++||.
T Consensus 3 ~~~~~t~GC~~N~~ds~~~~~-----~l~~~G~~~~~~~~~ADv~iiN 45 (439)
T PRK14328 3 KYFIETYGCQMNEEDSEKLAG-----MLKSMGYERTENREEADIIIFN 45 (439)
T ss_pred EEEEEEeCCCCCHHHHHHHHH-----HHHHCcCEECCCcCcCCEEEEe
Confidence 377888987 5566665543 4567888889999999999984
No 33
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=53.67 E-value=13 Score=32.76 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=29.9
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhccc-CccccCCcccccEEEEc
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRF-GIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRf-Gi~~~~SPRqADvLIVt 128 (140)
++..+||| |==+.|.|. ..+.+. |+..+..+..||++||.
T Consensus 2 ~~i~t~GC~~N~~dse~~~-----~~l~~~~G~~~~~~~~~aDv~iiN 44 (438)
T TIGR01574 2 LFIQTYGCQMNVRDSEHMA-----ALLTAKEGYALTEDAKEADVLLIN 44 (438)
T ss_pred eEEEeCCCCCcHHHHHHHH-----HHHHhcCCcEECCCcccCCEEEEe
Confidence 56778887 556666654 345666 88888999999999874
No 34
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.62 E-value=17 Score=31.89 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=32.5
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEcc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAG 129 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtG 129 (140)
+++..+||| |==+.|.|. ..+.+.|+..+..+.+||++||..
T Consensus 3 ~~~i~t~GC~~N~~dse~~~-----~~l~~~G~~~~~~~~~AD~viiNT 46 (418)
T PRK14336 3 GYYLWTIGCQMNQAESERLG-----RLFELWGYSLADKAEDAELVLVNS 46 (418)
T ss_pred eEEEEecCCCCcHHHHHHHH-----HHHHHCcCEECCCcccCCEEEEec
Confidence 478888987 556666554 356788999999999999999853
No 35
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.71 E-value=20 Score=31.43 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=30.8
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.++..+||| |=-+.|.|.- .+...|+..+..+.+||+++|.
T Consensus 2 ~~~i~t~GC~~N~~ds~~~~~-----~l~~~g~~~~~~~~~aDlvvin 44 (434)
T PRK14330 2 KFYIKTFGCQMNENDSETMAG-----LLKKEGFEPASNPEEADVVIIN 44 (434)
T ss_pred eEEEEEcCCCCcHHHHHHHHH-----HHHHCcCEECCCcccCCEEEEE
Confidence 367788987 6777776653 2456677778888999999995
No 36
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=39.60 E-value=24 Score=31.69 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=36.8
Q ss_pred HhCCccceeecCCchHHHHhhhCCcchh--hccc-CccccCCc-------------------ccccEEEEccccccch
Q 037421 80 RRGSIWPMSFGLACCAVEMMHTGAARYD--LDRF-GIIFRPSP-------------------RQSDVMVVAGTLTNKM 135 (140)
Q Consensus 80 R~~Slwp~~~g~acC~iEm~a~~~p~yD--~eRf-Gi~~~~SP-------------------RqADvLIVtGtVT~kM 135 (140)
|-.=||.-.-+|.||.+-++....|.++ +..+ -+.+.++= ..-|||+|.|.|..++
T Consensus 48 r~~viWLq~~~CtGcs~SlL~a~~P~~~~ll~~~i~l~yH~tl~aa~G~~a~~~l~~~~~~~~~~~ILvVEGaIp~~~ 125 (371)
T PRK10468 48 RPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENKHNALEKYKGQYVLVVDGSIPLKD 125 (371)
T ss_pred CCcEEEEeCCCCCCcHHHHhccCCCCHHHHHhcCceeeeccHHHHHhHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 4456676666899999999888888665 3333 11222221 2249999999998764
No 37
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.49 E-value=26 Score=31.86 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=29.8
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCc-cccCCcccccEEEE
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVV 127 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi-~~~~SPRqADvLIV 127 (140)
.++..+||| |==+.|.|+-. +...|. ..+..|..||++||
T Consensus 4 kv~i~T~GC~~N~~DSe~m~~~-----L~~~G~~~~~~~~~eADvvii 46 (437)
T COG0621 4 KVYIETLGCQMNLYDSERMAGL-----LEAAGYEELVEDPEEADVVII 46 (437)
T ss_pred eEEEEecCCCccHHHHHHHHHH-----HHHcCCccccCCcccCCEEEE
Confidence 467788987 67788877643 334455 68899999999987
No 38
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=37.35 E-value=27 Score=31.26 Aligned_cols=57 Identities=12% Similarity=0.273 Sum_probs=38.3
Q ss_pred HHhCCccceeecCCchHHHHhhhCCcchh--hccc-CccccC------------Cccc-------ccEEEEccccccch
Q 037421 79 IRRGSIWPMSFGLACCAVEMMHTGAARYD--LDRF-GIIFRP------------SPRQ-------SDVMVVAGTLTNKM 135 (140)
Q Consensus 79 ~R~~Slwp~~~g~acC~iEm~a~~~p~yD--~eRf-Gi~~~~------------SPRq-------ADvLIVtGtVT~kM 135 (140)
.|-.=+|.-..+|.||.+-++-...|..| +..+ -+.+.+ .+++ -|||+|.|.|..++
T Consensus 49 ~~~~viWL~~~~CtGCs~SlL~s~~P~~~~~ll~~isl~yhptlmaa~G~~ae~~l~~~~~~~~g~~ILvVEGaIp~~~ 127 (365)
T TIGR00391 49 QRPPVIWIHAQECTGCTESLLRSAHPTVENLILETISLEYHETLMAAFGHQAEENKHDAIEKYKGQYILVVEGSIPLGD 127 (365)
T ss_pred CCCCEEEEeCCCCCCcHHHHhccCCCCHHHHHhcCceEEechHhHHhhHHHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 34456676666799999999988888777 4443 122221 2232 59999999997664
No 39
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=32.85 E-value=44 Score=29.11 Aligned_cols=40 Identities=20% Similarity=0.373 Sum_probs=29.6
Q ss_pred ccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 84 IWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 84 lwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
++..+||| |==+.|.|. -.+.+.|+..+..+.+||+++|+
T Consensus 2 ~~~~t~GC~~N~~ds~~~~-----~~l~~~g~~~~~~~~~aD~v~in 43 (429)
T TIGR00089 2 VYIETYGCQMNEADSEIMA-----GLLKEAGYEVTDDPEEADVIIIN 43 (429)
T ss_pred EEEEEcCCCCcHHHHHHHH-----HHHHHCcCEECCCcccCCEEEEe
Confidence 56778887 555666554 23466788888999999999996
No 40
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.39 E-value=41 Score=29.83 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=27.5
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.++..+||| |==+.|.|.- .+...|+.++. +.+||++||.
T Consensus 5 ~~~i~tlGC~~N~~dse~~~~-----~l~~~G~~~~~-~~~ADiiiiN 46 (446)
T PRK14337 5 TFHIITFGCQMNVNDSDWLAR-----ALVARGFTEAP-EEEARVFIVN 46 (446)
T ss_pred EEEEEeeCCCCcHHHHHHHHH-----HHHHCCCEECC-cCCCCEEEEe
Confidence 478888987 5566665543 24566776666 4789999874
No 41
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=27.79 E-value=70 Score=24.99 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=42.7
Q ss_pred hhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcccccEEE----------Eccccccch
Q 037421 66 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMV----------VAGTLTNKM 135 (140)
Q Consensus 66 ~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLI----------VtGtVT~kM 135 (140)
..++++|++-+ ...+-.+-+|+|.-+..-|.=.....-..---.+.++. +.+|+++ .-|.+|.+|
T Consensus 14 ~~iv~~lr~~~----~~~~eI~AlGTNa~AT~~MlKaGA~~gATGENaIv~n~-~~aDiIvGpigIv~a~smlGEiTp~m 88 (131)
T PF12953_consen 14 KQIVEKLRKEL----PEEVEIIALGTNAIATSAMLKAGANEGATGENAIVVNA-RKADIIVGPIGIVIANSMLGEITPAM 88 (131)
T ss_pred HHHHHHHHHhC----CCCcEEEEEehhHHHHHHHHHcCCCCcccccchheecc-CCCCEEECcHHHhccCcccccccHHH
Confidence 34566666555 33577788899988888665444433333222233444 5599987 358888888
Q ss_pred hccc
Q 037421 136 APAL 139 (140)
Q Consensus 136 ap~L 139 (140)
+.++
T Consensus 89 A~AI 92 (131)
T PF12953_consen 89 AEAI 92 (131)
T ss_pred HHHH
Confidence 8654
No 42
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=27.33 E-value=59 Score=28.18 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=27.4
Q ss_pred eeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEcc
Q 037421 87 MSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAG 129 (140)
Q Consensus 87 ~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtG 129 (140)
.+||| |=-+.|.|.-. +...|+..+..+..||+++|+.
T Consensus 2 ~t~GC~~N~~ds~~~~~~-----l~~~g~~~~~~~~~aD~v~int 41 (414)
T TIGR01579 2 ETLGCRVNQYESESLKNQ-----LIQKGYEVVPDEDKADVYIINT 41 (414)
T ss_pred EeeCCCCCHHHHHHHHHH-----HHHCcCEECCCcccCCEEEEec
Confidence 46776 66777766532 4556777778888999999986
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=27.10 E-value=22 Score=30.03 Aligned_cols=35 Identities=9% Similarity=0.181 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHHHHhCCccceeec-CCchHHHHhh
Q 037421 66 EFVISKLDDVVNYIRRGSIWPMSFG-LACCAVEMMH 100 (140)
Q Consensus 66 ~~i~~~ld~l~nW~R~~Slwp~~~g-~acC~iEm~a 100 (140)
.-++...+.+.+|+....+-|+--. |+||.|++..
T Consensus 174 ~ell~~yeri~~~~kg~gvvpl~g~~C~GC~m~l~~ 209 (239)
T COG1579 174 PELLSEYERIRKNKKGVGVVPLEGRVCGGCHMKLPS 209 (239)
T ss_pred HHHHHHHHHHHhcCCCceEEeecCCcccCCeeeecH
Confidence 4466788999999887777776654 9999998765
No 44
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=27.00 E-value=55 Score=28.03 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=25.4
Q ss_pred cCCchHHHHhhhCCcch------hhcccC--ccccCCcccccEEEEcccccc
Q 037421 90 GLACCAVEMMHTGAARY------DLDRFG--IIFRPSPRQSDVMVVAGTLTN 133 (140)
Q Consensus 90 g~acC~iEm~a~~~p~y------D~eRfG--i~~~~SPRqADvLIVtGtVT~ 133 (140)
||.||.+-+.-+----+ |+.-+= ....--|. .||.+|.|.|.+
T Consensus 13 gC~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPE-vDValVEGsV~~ 63 (247)
T COG1941 13 GCSGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPE-VDVALVEGSVCD 63 (247)
T ss_pred cccchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCc-ccEEEEecccCc
Confidence 79999995544333223 332111 11223466 999999999874
No 45
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=24.62 E-value=56 Score=30.45 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=32.7
Q ss_pred CCccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEc
Q 037421 82 GSIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVA 128 (140)
Q Consensus 82 ~Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVt 128 (140)
.-+|+-++|| |--+.|.|+-. +..||..... |..||+-++.
T Consensus 55 qki~iktwgcshnnsdseymagq-----laaygy~lte-~eeadlwlln 97 (547)
T KOG4355|consen 55 QKIYIKTWGCSHNNSDSEYMAGQ-----LAAYGYALTE-PEEADLWLLN 97 (547)
T ss_pred cEEEEEeecccCCCchhHHHhhh-----HHhhhhccCC-cccccEEEec
Confidence 3589999998 67899999843 5678887777 9999997763
No 46
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.43 E-value=77 Score=27.87 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=30.8
Q ss_pred CccceeecC--CchHHHHhhhCCcchhhcccCccccCCcccccEEEEcc
Q 037421 83 SIWPMSFGL--ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAG 129 (140)
Q Consensus 83 Slwp~~~g~--acC~iEm~a~~~p~yD~eRfGi~~~~SPRqADvLIVtG 129 (140)
.+...+||| |-=+.|.|.- .+...|+..+..+.+||++||..
T Consensus 5 ~~~i~t~GC~~N~~ds~~~~~-----~l~~~g~~~~~~~~~aDvviinT 48 (444)
T PRK14325 5 KLYIKTYGCQMNEYDSSKMAD-----LLGAEGYELTDDPEEADLILLNT 48 (444)
T ss_pred EEEEEEcCCCCcHHHHHHHHH-----HHHHCcCEECCCcCCCCEEEEEc
Confidence 367788887 5555555542 35678888899999999999954
No 47
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=21.96 E-value=45 Score=28.71 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=15.9
Q ss_pred ccccCCcccccEEEEccc
Q 037421 113 IIFRPSPRQSDVMVVAGT 130 (140)
Q Consensus 113 i~~~~SPRqADvLIVtGt 130 (140)
|.|.-.|.++|-+++.|-
T Consensus 87 i~~kTDPkn~dY~~~~Ga 104 (324)
T PF04502_consen 87 IEFKTDPKNTDYVVESGA 104 (324)
T ss_pred EeeecCCCCCCeeeecCe
Confidence 358889999999999996
No 48
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.28 E-value=39 Score=26.20 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=15.2
Q ss_pred CcchhhcccC-ccccCCccc
Q 037421 103 AARYDLDRFG-IIFRPSPRQ 121 (140)
Q Consensus 103 ~p~yD~eRfG-i~~~~SPRq 121 (140)
++..|+|||| +.+++.||-
T Consensus 16 ~ALaDleRyagiki~gkPri 35 (125)
T COG1844 16 TALADLERYAGIKIRGKPRI 35 (125)
T ss_pred HHHHHHHHhcCceeecCCcc
Confidence 4557999998 589999983
No 49
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=20.03 E-value=75 Score=27.66 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHhCCccceeec-C--CchHH--HHhhhCCcchhhcccCccccC--CcccccEEEEccc
Q 037421 79 IRRGSIWPMSFG-L--ACCAV--EMMHTGAARYDLDRFGIIFRP--SPRQSDVMVVAGT 130 (140)
Q Consensus 79 ~R~~Slwp~~~g-~--acC~i--Em~a~~~p~yD~eRfGi~~~~--SPRqADvLIVtGt 130 (140)
.||+++|-++.+ . -+-.+ +.--+..|.||...|-+++-. ...+.|+|||.|-
T Consensus 137 ~rKGfPeSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~ 195 (283)
T COG1072 137 ARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGN 195 (283)
T ss_pred ccCCCCccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEech
Confidence 677777766653 0 00000 112355799999988875332 5688999999994
Done!