Query 037421
Match_columns 140
No_of_seqs 155 out of 781
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 20:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_6 NADH-quinone oxidoreduc 99.9 8.3E-29 2.8E-33 196.4 4.2 77 64-140 16-93 (181)
2 1yq9_A Periplasmic [NIFE] hydr 99.2 5E-12 1.7E-16 104.4 1.6 57 80-136 6-81 (264)
3 1wui_S Periplasmic [NIFE] hydr 99.1 4.1E-12 1.4E-16 105.0 0.3 56 80-136 6-83 (267)
4 2wpn_A Periplasmic [nifese] hy 99.1 1.2E-11 3.9E-16 104.7 1.7 55 82-136 43-119 (317)
5 1h2a_S Hydrogenase; SO ligand, 99.1 9.6E-12 3.3E-16 105.2 0.0 56 79-135 55-132 (317)
6 1cc1_S Hydrogenase (small subu 99.1 2.1E-11 7.2E-16 101.6 2.0 55 82-136 9-85 (283)
7 3ayx_B Membrane-bound hydrogen 98.6 9.4E-09 3.2E-13 85.8 2.5 54 83-136 12-90 (283)
8 1yqw_A Periplasmic [NIFE] hydr 98.4 1E-07 3.4E-12 78.8 2.0 54 82-136 5-83 (264)
9 3uqy_S Hydrogenase-1 small cha 97.2 0.00015 5E-09 62.0 2.5 52 84-136 10-84 (335)
10 3rgw_S Membrane-bound hydrogen 96.8 0.00049 1.7E-08 58.9 2.2 46 90-135 16-83 (339)
11 3myr_A Hydrogenase (NIFE) smal 96.3 0.0015 5E-08 54.1 2.4 52 84-135 7-82 (269)
12 2e5z_A SFRS8 protein, splicing 47.8 40 0.0014 23.4 5.3 40 68-120 24-63 (90)
13 3na7_A HP0958; flagellar bioge 32.6 12 0.00041 29.5 0.6 34 66-99 175-209 (256)
No 1
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=99.95 E-value=8.3e-29 Score=196.44 Aligned_cols=77 Identities=53% Similarity=1.002 Sum_probs=58.8
Q ss_pred cchhhhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCc-cccCCcccccEEEEccccccchhcccC
Q 037421 64 TAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALR 140 (140)
Q Consensus 64 ~~~~i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi-~~~~SPRqADvLIVtGtVT~kMap~Lr 140 (140)
..+|+.+++|+++||+|++|+|+++|||+||++||+++.+|+||++|||+ .|++||||||+|||+|+||+||+|+|+
T Consensus 16 ~~~~~~~~~~~l~~w~R~~slW~~~~gc~cC~iEll~~~~p~yDl~rfGi~~~~aSPrqaDiliVeG~Vt~~m~~~l~ 93 (181)
T 3i9v_6 16 REGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMR 93 (181)
T ss_dssp TTSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEESCCBTTTHHHHH
T ss_pred cCCchHHHHHHHHhhcccCCcccccCCCCchHHHHHHhhhchhhHHHcCcccccCCCCCceEEEEeccCCcccHHHHH
Confidence 35799999999999999999999999999999999999999999999999 999999999999999999999998763
No 2
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=99.17 E-value=5e-12 Score=104.40 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=52.3
Q ss_pred HhCCccceeecCCchHHHHhhhCCcchh---hcccCccccCCc----------------ccccEEEEccccccchh
Q 037421 80 RRGSIWPMSFGLACCAVEMMHTGAARYD---LDRFGIIFRPSP----------------RQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 80 R~~Slwp~~~g~acC~iEm~a~~~p~yD---~eRfGi~~~~SP----------------RqADvLIVtGtVT~kMa 136 (140)
|-+.+|+..+||+||.+||+.+..|+|| ++|||+.+.+|| ||+|||||+|+|+++|.
T Consensus 6 ~~~v~wl~~~~C~GC~isll~~~~p~~~~ll~~~i~i~~~~s~~~~~g~~a~~~~~~~~~~~diliVeGsV~~~~~ 81 (264)
T 1yq9_A 6 RPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDG 81 (264)
T ss_dssp SCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGG
T ss_pred CCcEEEEeCCccCchHHHHHhcCCcCHHHHHhhheeeEecCChhhhcchhHHHHHhhhccCCeEEEEeCCcccCCC
Confidence 4467888888999999999999999999 499999999999 99999999999999984
No 3
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=99.15 E-value=4.1e-12 Score=104.97 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=50.4
Q ss_pred HhCCccceeecCCchHHHHhhhCCcchh----------------------hcccCccccCCcccccEEEEccccccchh
Q 037421 80 RRGSIWPMSFGLACCAVEMMHTGAARYD----------------------LDRFGIIFRPSPRQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 80 R~~Slwp~~~g~acC~iEm~a~~~p~yD----------------------~eRfGi~~~~SPRqADvLIVtGtVT~kMa 136 (140)
|-..+|+-.++|+||.+||+.+..|.|| +||||+.++++||| |||||+|+|+++|.
T Consensus 6 r~~v~wl~~~~C~GC~isll~~~~p~~d~lll~~i~l~y~~~l~~~~g~~~e~~~~~~~~~p~~-Dil~VeG~V~~~~~ 83 (267)
T 1wui_S 6 RPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAAN 83 (267)
T ss_dssp SCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGG
T ss_pred CccEEEEecCccCcHHHHHHhcCCCCHHHHHhhheeeeecchhhhhhhHHHHHHHHHHhcCCCC-eEEEEeCCCccCCC
Confidence 4467888888999999999999999999 67788878899999 99999999999997
No 4
>2wpn_A Periplasmic [nifese] hydrogenase, small subunit; metal-binding, oxidoreductase, oxygen tolerance; HET: FSX SBY PSW; 2.04A {Desulfovibrio vulgaris}
Probab=99.12 E-value=1.2e-11 Score=104.65 Aligned_cols=55 Identities=15% Similarity=0.338 Sum_probs=50.2
Q ss_pred CCccceeecCCchHHHHhhhCCcchhh---cccCccccCCc-------------------ccccEEEEccccccchh
Q 037421 82 GSIWPMSFGLACCAVEMMHTGAARYDL---DRFGIIFRPSP-------------------RQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 82 ~Slwp~~~g~acC~iEm~a~~~p~yD~---eRfGi~~~~SP-------------------RqADvLIVtGtVT~kMa 136 (140)
+.+|+-.++|+||.+||+.+..|+||. +|||+.++++| ||+|||||+|+|+++|.
T Consensus 43 ~v~wl~~~~C~GC~isll~~~~p~~d~ll~~~i~l~~~~slm~~~g~~a~~~l~~~~~~~~~~DIliVEGsV~~~~~ 119 (317)
T 2wpn_A 43 PVFWLQGQGCTGCSVTLLNSVHPSIADVLLKVISLEFHPTVMAWEGEHAIEHMRKVAEKFKGKFFLVIEGSVPVEAD 119 (317)
T ss_dssp EEEEEESBCCSHHHHHHHTCCCTTHHHHHHHTCEEEECTTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBEECTGG
T ss_pred eEEEEeCCcCCcHHHHHHhcCCCCHHHHHhhceeeEecCchhhhcchHHHHHHHHHhccCCCCeEEEEeCCcccCCC
Confidence 566666668999999999999999999 99999999976 99999999999999986
No 5
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=99.09 E-value=9.6e-12 Score=105.19 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=48.6
Q ss_pred HHhCCccceeecCCchHHHHhhhCCcchh---hcccCcc-------------------ccCCcccccEEEEccccccch
Q 037421 79 IRRGSIWPMSFGLACCAVEMMHTGAARYD---LDRFGII-------------------FRPSPRQSDVMVVAGTLTNKM 135 (140)
Q Consensus 79 ~R~~Slwp~~~g~acC~iEm~a~~~p~yD---~eRfGi~-------------------~~~SPRqADvLIVtGtVT~kM 135 (140)
.|...+|+..+||+||.+||+.+..|.|| ++++++. ++++||| |||||+|+|+++|
T Consensus 55 ~r~~v~Wl~~~~C~GC~is~l~~~~p~~d~lll~~i~l~y~~~lm~~~G~~ae~~~~~~~~~pr~-DIliVeGsV~~~~ 132 (317)
T 1h2a_S 55 RRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHG-FIAVVEGGIPTAA 132 (317)
T ss_dssp SSCEEEEEECBCCSHHHHHHTTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHSCTTC-CEEEEESBEECGG
T ss_pred CCCeEEEeeCCccCcHHHHHHhcCCCCHHHHHhhceeeeecchhhhhchhHHHHHHHHHhcCCCC-eEEEEeCCCcCCC
Confidence 47789999999999999999999999999 4555444 4558999 9999999999999
No 6
>1cc1_S Hydrogenase (small subunit); NI-Fe-Se hydrogenase, oxidoreductase; 2.15A {Desulfomicrobium baculatum} SCOP: e.19.1.1
Probab=99.09 E-value=2.1e-11 Score=101.61 Aligned_cols=55 Identities=20% Similarity=0.410 Sum_probs=50.9
Q ss_pred CCccceeecCCchHHHHhhhCCcchhh---cccCccccCCc-------------------ccccEEEEccccccchh
Q 037421 82 GSIWPMSFGLACCAVEMMHTGAARYDL---DRFGIIFRPSP-------------------RQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 82 ~Slwp~~~g~acC~iEm~a~~~p~yD~---eRfGi~~~~SP-------------------RqADvLIVtGtVT~kMa 136 (140)
+.+|+-..+|+||.+||+.+..|+||. +|||+.|++|| ||+|||||+|+|+++|.
T Consensus 9 ~v~wl~~~~C~GC~isll~~~~p~~~~ll~~~i~l~~~~sl~~~~g~~a~~~l~~~~~~~~~~DilvVEGsV~~~~~ 85 (283)
T 1cc1_S 9 PVIWVQGQGCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKE 85 (283)
T ss_dssp EEEEEESBCCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGG
T ss_pred cEEEEecCccCcHHHHHHhccCCCHHHHHhhceeEEeccchhhhcchHHHHHHHHHHhcCCCceEEEEeCCcccCCC
Confidence 456766678999999999999999999 99999999997 99999999999999998
No 7
>3ayx_B Membrane-bound hydrogenase small subunit; oxidoreductase, membrane-bound NI-Fe hydrogenase; 1.18A {Hydrogenovibrio marinus} PDB: 3ayy_B 3ayz_B
Probab=98.63 E-value=9.4e-09 Score=85.77 Aligned_cols=54 Identities=9% Similarity=0.217 Sum_probs=45.2
Q ss_pred Cccceee---cCCchHHHHhhhCCcch-hh--cccCccccCC-------------------cccccEEEEccccccchh
Q 037421 83 SIWPMSF---GLACCAVEMMHTGAARY-DL--DRFGIIFRPS-------------------PRQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 83 Slwp~~~---g~acC~iEm~a~~~p~y-D~--eRfGi~~~~S-------------------PRqADvLIVtGtVT~kMa 136 (140)
++|++.+ +|+||.+|++.+..|.| |+ +.+++.+.++ +||+|||||+|+|+++|.
T Consensus 12 ~~~v~wl~~~~C~GC~islL~~~~P~~~d~l~~~i~l~~~~tl~~a~g~~a~~~l~~~~~~~~~~dilvVeG~V~~~~~ 90 (283)
T 3ayx_B 12 RTPVIWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAASGHAAEAILDEIKEKYKGNYILAVEGNPPLNQD 90 (283)
T ss_dssp CEEEEEEECBCCSHHHHHHHTCSSSCHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCSGG
T ss_pred CceEEEEeCCccCcHHHHHHhcCCCcHHHHHhhceeEEEecchhhhcchhHHHHHHHHhccCCCCeEEEEeCCCccCCC
Confidence 4555444 69999999999999999 74 5678888766 489999999999999996
No 8
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=98.37 E-value=1e-07 Score=78.76 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=45.2
Q ss_pred CCccceee---cCCchHHHHhhhCCcchh-h--cccCccccCC-------------------cccccEEEEccccccchh
Q 037421 82 GSIWPMSF---GLACCAVEMMHTGAARYD-L--DRFGIIFRPS-------------------PRQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 82 ~Slwp~~~---g~acC~iEm~a~~~p~yD-~--eRfGi~~~~S-------------------PRqADvLIVtGtVT~kMa 136 (140)
..+|++.+ +|+||.+|+..+..|.|| + +++++.+.++ ++| |||||+|+|+++|.
T Consensus 5 ~~~~v~wl~~~~C~GC~isll~~~~P~~d~ll~~~i~l~~~~tlm~a~g~~a~~~~~~~~~~~~~-dil~VeG~V~~~~~ 83 (264)
T 1yqw_A 5 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDG-YYLVVEGGLPTIDG 83 (264)
T ss_dssp CCCEEEEEECBCCSHHHHHHTTCBTTBHHHHHHHTCEEEEETTTCSCCHHHHHHHHHHHHTCTTC-EEEEEESBEECGGG
T ss_pred CCceEEEEeCCccCcHHHHHHHcCCCCHHHHHhcceEEEEecchhhhchhhHHHHHHHHhccCCC-eEEEEeCCcccCCC
Confidence 34555555 499999999999999999 4 7888887665 478 99999999999997
No 9
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=97.18 E-value=0.00015 Score=61.99 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=39.3
Q ss_pred ccceeecCCchHHHHhhhCCcchh--hcccCccccCCc---------------------ccccEEEEccccccchh
Q 037421 84 IWPMSFGLACCAVEMMHTGAARYD--LDRFGIIFRPSP---------------------RQSDVMVVAGTLTNKMA 136 (140)
Q Consensus 84 lwp~~~g~acC~iEm~a~~~p~yD--~eRfGi~~~~SP---------------------RqADvLIVtGtVT~kMa 136 (140)
+|.-..+|+||.++++.+..|.+| +.. +|.+...| +++|||||+|+|+++|.
T Consensus 10 iWl~~~~CtGCs~SlL~~~~P~l~~lll~-~I~L~yhptlm~~~G~~ae~~l~~~~~~~~~~dILlVeGsV~~~~~ 84 (335)
T 3uqy_S 10 VWIHGLECTCCTESFIRSAHPLAKDVILS-LISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQ 84 (335)
T ss_dssp EEEECBCCSHHHHHHHTCBTTBHHHHHHH-TEEEEEETTTCSCCHHHHHHHHHHHHHHTTTTEEEEEESBCBCGGG
T ss_pred EEEeCCccCchHHHHHCCCCCCHHHHHhc-CceEeechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCCC
Confidence 454333699999999999999999 322 34333333 67999999999999997
No 10
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=96.77 E-value=0.00049 Score=58.88 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=35.8
Q ss_pred cCCchHHHHhhhCCcchhh-cccCcc--ccC-------------------CcccccEEEEccccccch
Q 037421 90 GLACCAVEMMHTGAARYDL-DRFGII--FRP-------------------SPRQSDVMVVAGTLTNKM 135 (140)
Q Consensus 90 g~acC~iEm~a~~~p~yD~-eRfGi~--~~~-------------------SPRqADvLIVtGtVT~kM 135 (140)
+|+||.++++.+..|.+|- -..+|. +.+ -++++|||||+|.|+++|
T Consensus 16 ~CtGCt~SlL~~~~P~l~~ll~~~I~L~yhptlm~~~G~~a~~~l~~~~~~~~~~dILlVEGsV~~~~ 83 (339)
T 3rgw_S 16 ECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMTKYKGNYILAVEGNPPLNQ 83 (339)
T ss_dssp CCSHHHHHHTTCBTTBHHHHHHHTEEEEEETTTCSCCHHHHHHHHHHHHHHTTTCSEEEEESBCBCSG
T ss_pred cCCchHHHHHcCCCCCHHHHHhCCeeEEecchhhhhhhHHHHHHHHHHHhccCCCcEEEEeeeccCCC
Confidence 6999999999999999872 222343 322 147899999999999998
No 11
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=96.35 E-value=0.0015 Score=54.15 Aligned_cols=52 Identities=17% Similarity=0.348 Sum_probs=38.6
Q ss_pred ccceeecCCchHHHHhhhCCcchh---hcccCccccCCc-------------------ccccEEEEccccc--cch
Q 037421 84 IWPMSFGLACCAVEMMHTGAARYD---LDRFGIIFRPSP-------------------RQSDVMVVAGTLT--NKM 135 (140)
Q Consensus 84 lwp~~~g~acC~iEm~a~~~p~yD---~eRfGi~~~~SP-------------------RqADvLIVtGtVT--~kM 135 (140)
+|.-..+|+||.++++.+..|.+| ++..-+.+.++- +.+|||||+|.|+ .+|
T Consensus 7 iWl~~~~C~GCt~SlL~~~~p~l~~ll~~~I~l~yhptl~~~~G~~a~~~l~~~~~~~~~~dilvVEGsV~~p~~~ 82 (269)
T 3myr_A 7 IWLSFQECTGCTESLTRAHAPTLEDLILDFISLDYHHTLQAASGEAAEAARLQAMDENRGQYLVIVDGSIPGPDAN 82 (269)
T ss_dssp EEEECBCCSHHHHHHHHCCSSCHHHHHHHTCEEEECTTTCSSCHHHHHHHHHHHHHHTTTTCEEEEESBEECTTSC
T ss_pred EEEeCCccCchHHHHHCCCCCCHHHHHhCCeeEEechhhhhhhhHHHHHHHHHHHhcCCCCeEEEEeccCCCCcCC
Confidence 566444799999999999999998 333333343321 6799999999999 666
No 12
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.85 E-value=40 Score=23.43 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHhCCccceeecCCchHHHHhhhCCcchhhcccCccccCCcc
Q 037421 68 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPR 120 (140)
Q Consensus 68 i~~~ld~l~nW~R~~Slwp~~~g~acC~iEm~a~~~p~yD~eRfGi~~~~SPR 120 (140)
+...||++..+..+ +|...|-+... + +-.+|.+.+-.+|-
T Consensus 24 ir~iIdktA~fVak----------nG~~FE~~i~~--k-~np~F~FL~~~~py 63 (90)
T 2e5z_A 24 VQPVIDKLAEYVAR----------NGLKFETSVRA--K-NDQRFEFLQPWHQY 63 (90)
T ss_dssp THHHHHHHHHHHHH----------SCHHHHHHHHH--H-CCGGGCTTSSSCST
T ss_pred HHHHHHHHHHHHHH----------ccHHHHHHHHH--h-CCCCceeCCCCCcc
Confidence 44556666665555 67777754422 1 33455554444443
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.62 E-value=12 Score=29.45 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=25.9
Q ss_pred hhhhhhHHHHHHHHHhCCccceeec-CCchHHHHh
Q 037421 66 EFVISKLDDVVNYIRRGSIWPMSFG-LACCAVEMM 99 (140)
Q Consensus 66 ~~i~~~ld~l~nW~R~~Slwp~~~g-~acC~iEm~ 99 (140)
.-++...+++.+|....-+=++.-| |.||.+++-
T Consensus 175 ~~lL~~Yerir~~~~g~avv~v~~~~C~GC~~~lp 209 (256)
T 3na7_A 175 PKIYSFYERIRRWAKNTSIVTIKKQACGGCFIRLN 209 (256)
T ss_dssp HHHHHHHHHHHHHHGGGSEEECBTTBCTTTCCBCC
T ss_pred HHHHHHHHHHHHhCCCceEEEeeCCccCCCCeeeC
Confidence 4577888999988766566666666 999999874
Done!