BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037422
         (100 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS1|B Chain B, Crystal Structure Of Uvrd-Dna-So4 Complex
 pdb|2IS2|A Chain A, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS2|B Chain B, Crystal Structure Of Uvrd-Dna Binary Complex
 pdb|2IS4|A Chain A, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS4|B Chain B, Crystal Structure Of Uvrd-Dna-Adpnp Ternary Complex
 pdb|2IS6|A Chain A, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
 pdb|2IS6|B Chain B, Crystal Structure Of Uvrd-Dna-Adpmgf3 Ternary Complex
          Length = 680

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 12/57 (21%)

Query: 52  LSLSDAIRVNSN---------DVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99
           LS ++A+  N+N         D +DG PI   SL+  F EL       NR + W++N
Sbjct: 290 LSAANALIENNNGRLGKKLWTDGADGEPI---SLYCAFNELDEARFVVNRIKTWQDN 343


>pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd
          Length = 647

 Score = 26.9 bits (58), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 12/57 (21%)

Query: 52  LSLSDAIRVNSN---------DVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99
           LS ++A+  N+N         D +DG PI   SL+  F EL       NR + W++N
Sbjct: 290 LSAANALIENNNGRLGKKLWTDGADGEPI---SLYCAFNELDEARFVVNRIKTWQDN 343


>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
 pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
 pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
 pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
           Sp. Rha1
          Length = 394

 Score = 25.8 bits (55), Expect = 7.1,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 65  VSDGFPIINMSLFVPFQELHVLDLWN 90
           + DG P+  +S  +P ++  + D+WN
Sbjct: 158 IKDGRPVDFVSFLIPREDYRIDDVWN 183


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,016,406
Number of Sequences: 62578
Number of extensions: 97944
Number of successful extensions: 139
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 3
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)