Query 037422
Match_columns 100
No_of_seqs 135 out of 1212
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 12:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037422.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037422hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.1 1E-10 2.2E-15 90.8 6.6 87 2-99 33-136 (968)
2 PLN03150 hypothetical protein; 98.7 4.2E-08 9.1E-13 74.0 5.9 83 2-99 376-484 (623)
3 PF08263 LRRNT_2: Leucine rich 98.5 9.9E-08 2.2E-12 48.1 2.5 37 1-43 6-43 (43)
4 PF00560 LRR_1: Leucine Rich R 97.4 5.9E-05 1.3E-09 32.5 0.9 18 82-100 1-18 (22)
5 PLN03150 hypothetical protein; 97.0 0.00045 9.8E-09 52.5 2.5 30 67-99 479-508 (623)
6 PF12799 LRR_4: Leucine Rich r 96.8 0.0011 2.3E-08 33.4 1.9 35 49-94 3-37 (44)
7 PF13855 LRR_8: Leucine rich r 96.0 0.0062 1.3E-07 32.2 2.3 22 72-93 40-61 (61)
8 PF13855 LRR_8: Leucine rich r 95.8 0.0092 2E-07 31.5 2.2 38 48-95 2-39 (61)
9 PF13504 LRR_7: Leucine rich r 95.6 0.0076 1.6E-07 24.1 1.1 14 81-94 1-14 (17)
10 PLN00113 leucine-rich repeat r 95.6 0.0098 2.1E-07 46.9 2.6 27 72-99 563-589 (968)
11 PF13516 LRR_6: Leucine Rich r 95.1 0.012 2.6E-07 25.4 1.0 17 80-96 1-17 (24)
12 smart00370 LRR Leucine-rich re 94.4 0.036 7.9E-07 24.2 1.8 15 80-94 1-15 (26)
13 smart00369 LRR_TYP Leucine-ric 94.4 0.036 7.9E-07 24.2 1.8 15 80-94 1-15 (26)
14 KOG4237 Extracellular matrix p 93.5 0.055 1.2E-06 39.6 2.1 37 48-94 68-104 (498)
15 smart00368 LRR_RI Leucine rich 93.3 0.07 1.5E-06 24.0 1.6 14 81-94 2-15 (28)
16 smart00365 LRR_SD22 Leucine-ri 93.0 0.093 2E-06 23.4 1.7 15 80-94 1-15 (26)
17 KOG0472 Leucine-rich repeat pr 89.1 0.25 5.4E-06 36.6 1.6 22 72-94 520-541 (565)
18 smart00364 LRR_BAC Leucine-ric 87.4 0.37 8E-06 21.5 1.1 15 81-95 2-16 (26)
19 KOG0472 Leucine-rich repeat pr 79.0 1 2.2E-05 33.6 1.0 22 72-94 450-471 (565)
20 PRK15387 E3 ubiquitin-protein 77.9 1 2.2E-05 35.7 0.9 26 72-98 437-462 (788)
21 PF14580 LRR_9: Leucine-rich r 75.3 3.3 7.2E-05 26.8 2.6 10 48-57 43-52 (175)
22 KOG0617 Ras suppressor protein 74.4 1.2 2.6E-05 29.6 0.4 22 74-95 95-116 (264)
23 smart00367 LRR_CC Leucine-rich 68.3 4.1 8.9E-05 17.5 1.3 13 80-92 1-13 (26)
24 COG5238 RNA1 Ran GTPase-activa 65.9 3.2 7E-05 29.5 1.0 23 77-99 88-110 (388)
25 KOG4237 Extracellular matrix p 62.7 3.7 8E-05 30.5 0.9 19 77-95 270-288 (498)
26 PLN03210 Resistant to P. syrin 56.8 13 0.00028 30.8 3.1 21 78-98 799-819 (1153)
27 PRK15387 E3 ubiquitin-protein 56.6 16 0.00035 29.3 3.5 14 82-95 343-356 (788)
28 KOG4194 Membrane glycoprotein 56.6 3.2 6.8E-05 32.5 -0.3 13 81-93 173-185 (873)
29 KOG0618 Serine/threonine phosp 55.1 3.1 6.6E-05 33.9 -0.6 23 72-94 398-420 (1081)
30 KOG0444 Cytoskeletal regulator 54.2 4.7 0.0001 32.1 0.3 24 72-95 141-164 (1255)
31 KOG2982 Uncharacterized conser 53.9 8.4 0.00018 27.8 1.4 22 77-98 93-114 (418)
32 KOG1259 Nischarin, modulator o 49.8 7.3 0.00016 28.2 0.6 18 77-94 325-342 (490)
33 KOG4658 Apoptotic ATPase [Sign 48.9 7.1 0.00015 31.6 0.5 26 74-99 564-589 (889)
34 KOG4194 Membrane glycoprotein 47.6 4.2 9.1E-05 31.9 -0.9 23 77-99 361-383 (873)
35 KOG4579 Leucine-rich repeat (L 46.6 6.4 0.00014 25.3 -0.0 23 72-95 92-114 (177)
36 cd00116 LRR_RI Leucine-rich re 43.0 17 0.00037 24.7 1.6 18 78-95 218-235 (319)
37 PRK15370 E3 ubiquitin-protein 42.7 30 0.00066 27.6 3.1 13 82-94 221-233 (754)
38 KOG1909 Ran GTPase-activating 42.7 10 0.00022 27.6 0.5 18 77-94 209-226 (382)
39 KOG0531 Protein phosphatase 1, 39.5 12 0.00026 27.1 0.5 20 77-96 114-133 (414)
40 KOG0444 Cytoskeletal regulator 37.3 17 0.00037 29.2 1.0 22 72-94 95-116 (1255)
41 PLN03210 Resistant to P. syrin 37.0 45 0.00098 27.8 3.4 21 78-98 678-698 (1153)
42 KOG4658 Apoptotic ATPase [Sign 36.2 24 0.00052 28.7 1.7 17 78-94 592-608 (889)
43 KOG2739 Leucine-rich acidic nu 33.9 22 0.00048 24.7 1.0 16 79-94 89-104 (260)
44 KOG3207 Beta-tubulin folding c 33.0 19 0.00041 27.2 0.6 21 77-97 168-188 (505)
45 smart00446 LRRcap occurring C- 31.3 13 0.00029 16.4 -0.2 14 77-90 9-22 (26)
46 KOG1644 U2-associated snRNP A' 31.1 53 0.0011 22.4 2.4 15 79-93 62-76 (233)
47 KOG0618 Serine/threonine phosp 29.4 26 0.00056 29.0 0.8 21 74-95 446-466 (1081)
48 cd01262 PH_PDK1 3-Phosphoinosi 25.5 33 0.00071 19.9 0.6 23 77-99 22-44 (89)
49 KOG1859 Leucine-rich repeat pr 24.4 24 0.00053 28.7 -0.1 18 77-94 205-222 (1096)
50 COG4886 Leucine-rich repeat (L 21.1 67 0.0014 22.8 1.6 22 77-98 273-294 (394)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.14 E-value=1e-10 Score=90.82 Aligned_cols=87 Identities=30% Similarity=0.467 Sum_probs=57.6
Q ss_pred hHHHHHhhcccCCcccccccccCCcccCCCCCCceeeeEEecCCCCcEEEEEcCcC-CcCC--------CCCCC------
Q 037422 2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDA-IRVN--------SNDVS------ 66 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~w~gi~C~~~~~~v~~l~l~~~-~~~~--------~~l~~------ 66 (100)
+|++||+.+.++ . ..+.+|. ...+||.|.||.|+. .++|+.|++.++ +.+. +.+..
T Consensus 33 ~l~~~~~~~~~~---~---~~~~~w~--~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 33 LLLSFKSSINDP---L---KYLSNWN--SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred HHHHHHHhCCCC---c---ccCCCCC--CCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 688999988655 2 1467895 567899999999975 579999999986 3331 00000
Q ss_pred --CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 67 --DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 67 --~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
.|. +|..++..+++|++|+|++|+|+|.||.
T Consensus 104 ~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~ 136 (968)
T PLN00113 104 QLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR 136 (968)
T ss_pred ccCCc--CChHHhccCCCCCEEECcCCccccccCc
Confidence 233 4444434667777777777777776663
No 2
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=4.2e-08 Score=73.99 Aligned_cols=83 Identities=27% Similarity=0.391 Sum_probs=54.2
Q ss_pred hHHHHHhhcccCCcccccccccCCcccCCCCCCc-----eeeeEEecCC--C--CcEEEEEcCcC-CcCC--------CC
Q 037422 2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCC-----SWERIKCNAT--T--GWVMELSLSDA-IRVN--------SN 63 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C-----~w~gi~C~~~--~--~~v~~l~l~~~-~~~~--------~~ 63 (100)
+|+.+|+.+..+ ...+|. + ++| .|.||.|... . .+|+.|+|.++ +.|. ..
T Consensus 376 aL~~~k~~~~~~--------~~~~W~---g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 376 ALQTLKSSLGLP--------LRFGWN---G-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred HHHHHHHhcCCc--------ccCCCC---C-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 577788777543 123784 2 445 6999999521 1 25889999887 5441 01
Q ss_pred CC-----C---CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 64 DV-----S---DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 64 l~-----~---~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
|. . .|. +|..+ +.+++|+.|||++|+|+|.||.
T Consensus 444 L~~L~Ls~N~l~g~--iP~~~-~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 444 LQSINLSGNSIRGN--IPPSL-GSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred CCEEECCCCcccCc--CChHH-hCCCCCCEEECCCCCCCCCCch
Confidence 10 0 344 65554 8888899999999999988885
No 3
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.50 E-value=9.9e-08 Score=48.06 Aligned_cols=37 Identities=32% Similarity=0.681 Sum_probs=23.9
Q ss_pred ChHHHHHhhcccCCcccccccccCCcccCC-CCCCceeeeEEec
Q 037422 1 MGLLEIKAFIKSVSDMQYADAILVSWVDNR-TSDCCSWERIKCN 43 (100)
Q Consensus 1 ~~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~-~~~~C~w~gi~C~ 43 (100)
++|++||+.+..+ .. ..+.+|.. . ..+||.|.||.|+
T Consensus 6 ~aLl~~k~~l~~~--~~---~~l~~W~~-~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 6 QALLAFKKSLNND--PS---GVLSSWNP-SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHCTT-S--C----CCCTT--T-T--S-CCCSTTEEE-
T ss_pred HHHHHHHHhcccc--cC---cccccCCC-cCCCCCeeeccEEeC
Confidence 3799999999853 11 25889962 2 2799999999995
No 4
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.43 E-value=5.9e-05 Score=32.46 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCcEEeCcCCccccccCCC
Q 037422 82 ELHVLDLWNNRFEGWEENK 100 (100)
Q Consensus 82 ~L~~L~Ls~N~~sG~iP~~ 100 (100)
+|++|||++|+|+ .||++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4899999999999 89974
No 5
>PLN03150 hypothetical protein; Provisional
Probab=97.02 E-value=0.00045 Score=52.49 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 67 DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 67 ~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
.|. +|.. ++.|++|+.|+|++|.|+|.||.
T Consensus 479 sg~--iP~~-l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 479 NGS--IPES-LGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred CCC--CchH-HhcCCCCCEEECcCCcccccCCh
Confidence 555 6555 49999999999999999999995
No 6
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.78 E-value=0.0011 Score=33.36 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=26.0
Q ss_pred EEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422 49 VMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 49 v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
++.|++.++ .+ . . +++.+ ..|++|+.|+|++|.++
T Consensus 3 L~~L~l~~N-----~i--~-~--l~~~l-~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNN-----QI--T-D--LPPEL-SNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSS-----S---S-S--HGGHG-TTCTTSSEEEETSSCCS
T ss_pred ceEEEccCC-----CC--c-c--cCchH-hCCCCCCEEEecCCCCC
Confidence 556777775 55 2 2 76654 99999999999999987
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.04 E-value=0.0062 Score=32.22 Aligned_cols=22 Identities=36% Similarity=0.464 Sum_probs=14.6
Q ss_pred cCCCCCCCCCCCcEEeCcCCcc
Q 037422 72 INMSLFVPFQELHVLDLWNNRF 93 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~ 93 (100)
+++..|..+++|++|++++|++
T Consensus 40 i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 40 IPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp EETTTTTTSTTESEEEETSSSB
T ss_pred cCHHHHcCCCCCCEEeCcCCcC
Confidence 4455557777777777777764
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.78 E-value=0.0092 Score=31.53 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=29.1
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+++.|++.++ .+ . . +++..|..+++|++|++++|.++.
T Consensus 2 ~L~~L~l~~n-----~l--~-~--i~~~~f~~l~~L~~L~l~~N~l~~ 39 (61)
T PF13855_consen 2 NLESLDLSNN-----KL--T-E--IPPDSFSNLPNLETLDLSNNNLTS 39 (61)
T ss_dssp TESEEEETSS-----TE--S-E--ECTTTTTTGTTESEEEETSSSESE
T ss_pred cCcEEECCCC-----CC--C-c--cCHHHHcCCCCCCEeEccCCccCc
Confidence 4567777775 44 2 2 777677999999999999999974
No 9
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.59 E-value=0.0076 Score=24.15 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=9.6
Q ss_pred CCCcEEeCcCCccc
Q 037422 81 QELHVLDLWNNRFE 94 (100)
Q Consensus 81 ~~L~~L~Ls~N~~s 94 (100)
++|+.|+|++|+|+
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 47899999999975
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.57 E-value=0.0098 Score=46.95 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=19.0
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+|..+ ..++.|+.|++++|.++|.||.
T Consensus 563 ~p~~l-~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 563 IPKNL-GNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CChhH-hcCcccCEEeccCCcceeeCCC
Confidence 54443 6777777777777777777774
No 11
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.07 E-value=0.012 Score=25.37 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=12.1
Q ss_pred CCCCcEEeCcCCccccc
Q 037422 80 FQELHVLDLWNNRFEGW 96 (100)
Q Consensus 80 l~~L~~L~Ls~N~~sG~ 96 (100)
+++|+.|+|++|.++..
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 46899999999998764
No 12
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.42 E-value=0.036 Score=24.23 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=13.0
Q ss_pred CCCCcEEeCcCCccc
Q 037422 80 FQELHVLDLWNNRFE 94 (100)
Q Consensus 80 l~~L~~L~Ls~N~~s 94 (100)
|++|+.|+|+.|.++
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00370 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 578999999999875
No 13
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.42 E-value=0.036 Score=24.23 Aligned_cols=15 Identities=40% Similarity=0.580 Sum_probs=13.0
Q ss_pred CCCCcEEeCcCCccc
Q 037422 80 FQELHVLDLWNNRFE 94 (100)
Q Consensus 80 l~~L~~L~Ls~N~~s 94 (100)
|++|+.|+|+.|.++
T Consensus 1 L~~L~~L~L~~N~l~ 15 (26)
T smart00369 1 LPNLRELDLSNNQLS 15 (26)
T ss_pred CCCCCEEECCCCcCC
Confidence 578999999999875
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.52 E-value=0.055 Score=39.65 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=28.7
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
..++|+|+.+ .+ ..||+.-|..+++|+.||||.|+++
T Consensus 68 ~tveirLdqN-----~I-----~~iP~~aF~~l~~LRrLdLS~N~Is 104 (498)
T KOG4237|consen 68 ETVEIRLDQN-----QI-----SSIPPGAFKTLHRLRRLDLSKNNIS 104 (498)
T ss_pred cceEEEeccC-----Cc-----ccCChhhccchhhhceecccccchh
Confidence 4577777775 44 1277777899999999999999875
No 15
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.29 E-value=0.07 Score=23.99 Aligned_cols=14 Identities=43% Similarity=0.562 Sum_probs=12.1
Q ss_pred CCCcEEeCcCCccc
Q 037422 81 QELHVLDLWNNRFE 94 (100)
Q Consensus 81 ~~L~~L~Ls~N~~s 94 (100)
+.|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57899999999984
No 16
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.96 E-value=0.093 Score=23.39 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=12.7
Q ss_pred CCCCcEEeCcCCccc
Q 037422 80 FQELHVLDLWNNRFE 94 (100)
Q Consensus 80 l~~L~~L~Ls~N~~s 94 (100)
|++|+.|+|++|.++
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 568999999999874
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.06 E-value=0.25 Score=36.60 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=20.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
|||.+ +++.+|+.|+|++|.|.
T Consensus 520 IPp~L-gnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPIL-GNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhh-ccccceeEEEecCCccC
Confidence 77765 99999999999999998
No 18
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.37 E-value=0.37 Score=21.48 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.4
Q ss_pred CCCcEEeCcCCcccc
Q 037422 81 QELHVLDLWNNRFEG 95 (100)
Q Consensus 81 ~~L~~L~Ls~N~~sG 95 (100)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 368899999999864
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.02 E-value=1 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.9
Q ss_pred cCCCCCCCCCCCcEEeCcCCccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
+|.++ +.+..||.||+|.|+|.
T Consensus 450 LP~e~-~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 450 LPEEM-GSLVRLQTLNLSFNRFR 471 (565)
T ss_pred cchhh-hhhhhhheecccccccc
Confidence 66665 78888999999999874
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=77.86 E-value=1 Score=35.72 Aligned_cols=26 Identities=12% Similarity=0.122 Sum_probs=21.4
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
||.. +..+++|+.|+|++|.|+|.+|
T Consensus 437 LP~s-l~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 437 LPES-LIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cChH-HhhccCCCeEECCCCCCCchHH
Confidence 5444 4789999999999999999865
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=75.31 E-value=3.3 Score=26.80 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=4.5
Q ss_pred cEEEEEcCcC
Q 037422 48 WVMELSLSDA 57 (100)
Q Consensus 48 ~v~~l~l~~~ 57 (100)
++..++++++
T Consensus 43 ~L~~L~Ls~N 52 (175)
T PF14580_consen 43 KLEVLDLSNN 52 (175)
T ss_dssp T--EEE-TTS
T ss_pred CCCEEECCCC
Confidence 4566677665
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=74.42 E-value=1.2 Score=29.61 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=17.1
Q ss_pred CCCCCCCCCCcEEeCcCCcccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
|..|+.++.|++|||.+|+++-
T Consensus 95 prgfgs~p~levldltynnl~e 116 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNE 116 (264)
T ss_pred ccccCCCchhhhhhcccccccc
Confidence 3345899999999999988753
No 23
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=68.32 E-value=4.1 Score=17.49 Aligned_cols=13 Identities=31% Similarity=0.268 Sum_probs=10.4
Q ss_pred CCCCcEEeCcCCc
Q 037422 80 FQELHVLDLWNNR 92 (100)
Q Consensus 80 l~~L~~L~Ls~N~ 92 (100)
+++|+.|+|++..
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4688999999874
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=65.85 E-value=3.2 Score=29.50 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.1
Q ss_pred CCCCCCCcEEeCcCCccccccCC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+..|++|+.+|||.|.|.-..|.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred HhcCCcceeeeccccccCcccch
Confidence 37899999999999999887764
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=62.67 E-value=3.7 Score=30.52 Aligned_cols=19 Identities=32% Similarity=0.481 Sum_probs=17.2
Q ss_pred CCCCCCCcEEeCcCCcccc
Q 037422 77 FVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG 95 (100)
|..|++|+.|+|++|.+++
T Consensus 270 f~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred HhhcccceEeccCCCccch
Confidence 5889999999999999875
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=56.76 E-value=13 Score=30.80 Aligned_cols=21 Identities=14% Similarity=-0.065 Sum_probs=11.8
Q ss_pred CCCCCCcEEeCcCCccccccC
Q 037422 78 VPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~iP 98 (100)
..|++|+.|+|++|..-+.||
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeC
Confidence 566666666666654434444
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=56.60 E-value=16 Score=29.28 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.4
Q ss_pred CCcEEeCcCCcccc
Q 037422 82 ELHVLDLWNNRFEG 95 (100)
Q Consensus 82 ~L~~L~Ls~N~~sG 95 (100)
.|+.|+|++|+|++
T Consensus 343 ~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 343 GLQELSVSDNQLAS 356 (788)
T ss_pred ccceEecCCCccCC
Confidence 57778888777774
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=56.60 E-value=3.2 Score=32.52 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=7.0
Q ss_pred CCCcEEeCcCCcc
Q 037422 81 QELHVLDLWNNRF 93 (100)
Q Consensus 81 ~~L~~L~Ls~N~~ 93 (100)
..|++|+|++|.+
T Consensus 173 ~ni~~L~La~N~I 185 (873)
T KOG4194|consen 173 VNIKKLNLASNRI 185 (873)
T ss_pred CCceEEeeccccc
Confidence 3455555555554
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=55.14 E-value=3.1 Score=33.91 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=15.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
+|...+.+|..|+.|+||+|.+.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh
Confidence 55544567777777777777654
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=54.24 E-value=4.7 Score=32.07 Aligned_cols=24 Identities=50% Similarity=0.653 Sum_probs=17.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCcccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
||.++|.+|..|-+||||.|.+.-
T Consensus 141 IPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred CCchHHHhhHhHhhhccccchhhh
Confidence 666666777777777777777654
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.91 E-value=8.4 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=19.2
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+-+|++|++|+||.|.++..|-
T Consensus 93 le~lP~l~~LNls~N~L~s~I~ 114 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIK 114 (418)
T ss_pred HhcCccceEeeccCCcCCCccc
Confidence 4689999999999999987763
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=49.75 E-value=7.3 Score=28.23 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.5
Q ss_pred CCCCCCCcEEeCcCCccc
Q 037422 77 FVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~s 94 (100)
++.|.+|+.||||+|.++
T Consensus 325 La~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhcccceEeecccchhH
Confidence 467888899999998764
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=48.90 E-value=7.1 Score=31.62 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=15.6
Q ss_pred CCCCCCCCCCcEEeCcCCccccccCC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
..+|..++.|++||||+|.=-+.+|.
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCCh
Confidence 33346677777777776654455553
No 34
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=47.56 E-value=4.2 Score=31.88 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=19.0
Q ss_pred CCCCCCCcEEeCcCCccccccCC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
|..+++|+.|||+.|.+++-|.+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEec
Confidence 46788999999999999887753
No 35
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=46.57 E-value=6.4 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=18.5
Q ss_pred cCCCCCCCCCCCcEEeCcCCcccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+|-+ ++.++.|+.|++++|.|.-
T Consensus 92 vPeE-~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 92 VPEE-LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred chHH-HhhhHHhhhcccccCcccc
Confidence 5555 5889999999999998764
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=43.00 E-value=17 Score=24.66 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=13.7
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|++++|.+++
T Consensus 218 ~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred cccCCCCEEecCCCcCch
Confidence 567778888888887764
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=42.72 E-value=30 Score=27.61 Aligned_cols=13 Identities=15% Similarity=0.228 Sum_probs=7.4
Q ss_pred CCcEEeCcCCccc
Q 037422 82 ELHVLDLWNNRFE 94 (100)
Q Consensus 82 ~L~~L~Ls~N~~s 94 (100)
+|+.|+|++|+|+
T Consensus 221 nL~~L~Ls~N~Lt 233 (754)
T PRK15370 221 NIKTLYANSNQLT 233 (754)
T ss_pred CCCEEECCCCccc
Confidence 4555555555554
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=42.67 E-value=10 Score=27.60 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=16.0
Q ss_pred CCCCCCCcEEeCcCCccc
Q 037422 77 FVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~s 94 (100)
|..+++|++|||..|.|+
T Consensus 209 l~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred HHhCCcceeeecccchhh
Confidence 478999999999999886
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=39.51 E-value=12 Score=27.11 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=16.5
Q ss_pred CCCCCCCcEEeCcCCccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~ 96 (100)
+..+++|++|||++|.++--
T Consensus 114 l~~~~~L~~L~ls~N~I~~i 133 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKL 133 (414)
T ss_pred hhhhhcchheeccccccccc
Confidence 37789999999999987653
No 40
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=37.35 E-value=17 Score=29.18 Aligned_cols=22 Identities=27% Similarity=0.550 Sum_probs=17.9
Q ss_pred cCCCCCCCCCCCcEEeCcCCccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
||+.+ -.|+.|..||||.|++.
T Consensus 95 iP~di-F~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 95 IPTDI-FRLKDLTILDLSHNQLR 116 (1255)
T ss_pred CCchh-cccccceeeecchhhhh
Confidence 77776 68899999999988874
No 41
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=36.99 E-value=45 Score=27.78 Aligned_cols=21 Identities=14% Similarity=-0.059 Sum_probs=10.4
Q ss_pred CCCCCCcEEeCcCCccccccC
Q 037422 78 VPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~iP 98 (100)
..|++|+.|++++|..-..||
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccC
Confidence 455555555555544333343
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=36.21 E-value=24 Score=28.73 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=9.2
Q ss_pred CCCCCCcEEeCcCCccc
Q 037422 78 VPFQELHVLDLWNNRFE 94 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~s 94 (100)
+.|-+|++|||+...++
T Consensus 592 ~~Li~LryL~L~~t~I~ 608 (889)
T KOG4658|consen 592 GELVHLRYLDLSDTGIS 608 (889)
T ss_pred hhhhhhhcccccCCCcc
Confidence 55555555555555443
No 43
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.91 E-value=22 Score=24.67 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=10.5
Q ss_pred CCCCCcEEeCcCCccc
Q 037422 79 PFQELHVLDLWNNRFE 94 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~s 94 (100)
.+++|++|+||.|++.
T Consensus 89 ~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIK 104 (260)
T ss_pred hCCceeEEeecCCccc
Confidence 4577777777777653
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=19 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.312 Sum_probs=15.8
Q ss_pred CCCCCCCcEEeCcCCcccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~i 97 (100)
+..|++|+.|+||.|.|.-.+
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred HHhcccchhcccccccccCCc
Confidence 467888889999988875443
No 45
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=31.28 E-value=13 Score=16.40 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=10.7
Q ss_pred CCCCCCCcEEeCcC
Q 037422 77 FVPFQELHVLDLWN 90 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~ 90 (100)
+..|++|+.||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 36788899999754
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=31.12 E-value=53 Score=22.39 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=7.1
Q ss_pred CCCCCcEEeCcCCcc
Q 037422 79 PFQELHVLDLWNNRF 93 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~ 93 (100)
.++.|.+|.|++|++
T Consensus 62 ~l~rL~tLll~nNrI 76 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRI 76 (233)
T ss_pred CccccceEEecCCcc
Confidence 344444555554443
No 47
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=29.36 E-value=26 Score=28.96 Aligned_cols=21 Identities=33% Similarity=0.418 Sum_probs=17.5
Q ss_pred CCCCCCCCCCcEEeCcCCcccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
|++ ..++.|+++|||-|+++=
T Consensus 446 Pe~-~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 446 PEL-AQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred hhh-hhcCcceEEecccchhhh
Confidence 454 899999999999998753
No 48
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.51 E-value=33 Score=19.87 Aligned_cols=23 Identities=13% Similarity=-0.072 Sum_probs=18.1
Q ss_pred CCCCCCCcEEeCcCCccccccCC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
|...++|-+.|.....+-|+||-
T Consensus 22 LTd~PrL~yvdp~~~~~KgeIp~ 44 (89)
T cd01262 22 LTNGPRLIYVDPVKKVVKGEIPW 44 (89)
T ss_pred EecCceEEEEcCCcCeEEeEecc
Confidence 36677888888888888888883
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=24.37 E-value=24 Score=28.66 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.3
Q ss_pred CCCCCCCcEEeCcCCccc
Q 037422 77 FVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~s 94 (100)
+-.|.+|+.|||++|.+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HHhcccccccccccchhc
Confidence 467888889999988764
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=21.07 E-value=67 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=17.3
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+..|+.|++++|.++..+|
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccCccCEEeccCccccccch
Confidence 4788888899999888776654
Done!