Query 037422
Match_columns 100
No_of_seqs 135 out of 1212
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:44:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.4 8.5E-13 2.9E-17 99.1 6.1 86 2-99 16-118 (768)
2 1ogq_A PGIP-2, polygalacturona 99.3 1.7E-12 5.9E-17 88.4 5.1 47 2-57 10-60 (313)
3 4ecn_A Leucine-rich repeat pro 99.1 7.7E-11 2.6E-15 90.3 5.0 75 2-98 273-365 (876)
4 4eco_A Uncharacterized protein 99.0 5.1E-10 1.7E-14 82.7 5.5 79 2-93 34-117 (636)
5 4fcg_A Uncharacterized protein 98.2 1.2E-07 4.1E-12 64.9 -0.4 51 2-57 31-91 (328)
6 3e6j_A Variable lymphocyte rec 97.5 0.00024 8.4E-09 46.0 5.7 66 30-97 14-104 (229)
7 3rgz_A Protein brassinosteroid 97.4 8.1E-05 2.8E-09 56.0 2.8 21 78-98 677-697 (768)
8 2ifg_A High affinity nerve gro 97.4 0.00018 6.2E-09 48.9 4.3 25 72-96 71-95 (347)
9 2o6r_A Variable lymphocyte rec 97.3 0.00052 1.8E-08 42.4 5.1 65 34-98 6-93 (177)
10 2o6s_A Variable lymphocyte rec 97.2 0.00056 1.9E-08 43.3 5.1 64 33-96 5-91 (208)
11 1w8a_A SLIT protein; signaling 97.1 0.00071 2.4E-08 42.6 4.6 25 74-98 71-95 (192)
12 2o6q_A Variable lymphocyte rec 97.0 0.00067 2.3E-08 44.7 3.6 22 74-95 78-99 (270)
13 2z81_A CD282 antigen, TOLL-lik 96.9 0.00085 2.9E-08 48.0 4.2 26 73-98 66-91 (549)
14 4ay9_X Follicle-stimulating ho 96.9 0.00078 2.7E-08 46.1 3.6 55 35-99 9-72 (350)
15 3g39_A Variable lymphocyte rec 96.9 0.002 6.8E-08 39.8 5.2 27 72-98 69-95 (170)
16 1ogq_A PGIP-2, polygalacturona 96.8 0.00052 1.8E-08 46.3 2.1 27 72-99 260-286 (313)
17 3v47_A TOLL-like receptor 5B a 96.7 0.0019 6.5E-08 45.1 4.7 28 72-99 70-97 (455)
18 2v9t_B SLIT homolog 2 protein 96.7 0.0028 9.7E-08 40.7 4.9 61 34-94 10-93 (220)
19 1w8a_A SLIT protein; signaling 96.6 0.0023 7.8E-08 40.2 3.9 25 74-98 95-119 (192)
20 2z66_A Variable lymphocyte rec 96.6 0.0034 1.2E-07 41.7 4.9 52 33-94 5-65 (306)
21 2r9u_A Variable lymphocyte rec 96.4 0.0041 1.4E-07 38.6 4.2 25 72-96 72-96 (174)
22 2z80_A TOLL-like receptor 2, v 96.4 0.004 1.4E-07 42.4 4.4 26 31-57 26-62 (353)
23 4fcg_A Uncharacterized protein 96.4 0.0023 7.8E-08 43.5 3.2 27 72-99 269-295 (328)
24 3g39_A Variable lymphocyte rec 96.4 0.0044 1.5E-07 38.2 4.2 20 77-96 98-117 (170)
25 2r9u_A Variable lymphocyte rec 96.3 0.0057 1.9E-07 38.0 4.4 22 74-95 98-119 (174)
26 2ifg_A High affinity nerve gro 96.3 0.003 1E-07 42.8 3.2 55 35-99 8-74 (347)
27 3m19_A Variable lymphocyte rec 96.2 0.0053 1.8E-07 39.9 4.2 23 74-96 76-98 (251)
28 2v70_A SLIT-2, SLIT homolog 2 95.8 0.013 4.6E-07 37.4 4.5 22 77-98 125-146 (220)
29 2wfh_A SLIT homolog 2 protein 95.8 0.014 4.8E-07 36.7 4.5 17 78-94 99-115 (193)
30 2v70_A SLIT-2, SLIT homolog 2 95.8 0.01 3.4E-07 38.1 3.8 28 72-99 96-123 (220)
31 3oja_A Leucine-rich immune mol 95.7 0.0078 2.7E-07 43.1 3.4 20 78-97 141-160 (487)
32 1xku_A Decorin; proteoglycan, 95.7 0.024 8.2E-07 38.0 5.7 24 34-57 30-62 (330)
33 3e6j_A Variable lymphocyte rec 95.7 0.016 5.4E-07 37.3 4.5 17 78-94 109-125 (229)
34 4g8a_A TOLL-like receptor 4; l 95.7 0.0095 3.3E-07 42.9 3.7 28 72-99 533-560 (635)
35 2o6r_A Variable lymphocyte rec 95.6 0.016 5.4E-07 35.5 4.2 25 72-96 91-115 (177)
36 2v9t_B SLIT homolog 2 protein 95.6 0.019 6.6E-07 36.7 4.5 20 77-96 124-143 (220)
37 4eco_A Uncharacterized protein 95.5 0.0067 2.3E-07 44.8 2.4 42 48-99 250-293 (636)
38 2ft3_A Biglycan; proteoglycan, 95.4 0.02 6.9E-07 38.5 4.4 23 35-57 33-64 (332)
39 3cvr_A Invasion plasmid antige 95.3 0.0024 8.3E-08 47.0 -0.4 67 23-98 33-116 (571)
40 1wwl_A Monocyte differentiatio 95.2 0.025 8.5E-07 37.9 4.4 22 77-99 249-270 (312)
41 3v47_A TOLL-like receptor 5B a 95.2 0.021 7.2E-07 39.8 4.1 21 77-97 99-119 (455)
42 3rfs_A Internalin B, repeat mo 95.1 0.026 8.9E-07 37.0 4.2 27 72-98 196-222 (272)
43 2o6s_A Variable lymphocyte rec 95.1 0.031 1.1E-06 35.0 4.4 27 72-98 139-165 (208)
44 4g8a_A TOLL-like receptor 4; l 95.1 0.02 6.8E-07 41.2 3.8 24 72-95 91-114 (635)
45 3m19_A Variable lymphocyte rec 95.0 0.036 1.2E-06 35.9 4.5 20 77-96 151-170 (251)
46 2wfh_A SLIT homolog 2 protein 94.8 0.038 1.3E-06 34.7 4.2 18 78-95 75-92 (193)
47 2z62_A TOLL-like receptor 4, v 94.8 0.057 2E-06 35.2 5.2 27 72-98 215-241 (276)
48 1wwl_A Monocyte differentiatio 94.7 0.019 6.5E-07 38.4 2.7 19 78-96 118-136 (312)
49 3rfs_A Internalin B, repeat mo 94.6 0.047 1.6E-06 35.8 4.4 27 72-98 172-198 (272)
50 4b8c_D Glucose-repressible alc 94.6 0.016 5.4E-07 43.7 2.3 27 72-99 308-334 (727)
51 3a79_B TLR6, VLRB.59, TOLL-lik 94.6 0.039 1.3E-06 39.8 4.2 27 72-98 419-445 (562)
52 2z80_A TOLL-like receptor 2, v 94.5 0.03 1E-06 38.0 3.3 41 48-98 278-318 (353)
53 3vq2_A TLR4, TOLL-like recepto 94.4 0.073 2.5E-06 38.5 5.3 28 72-99 71-98 (606)
54 2z7x_B TOLL-like receptor 1, v 94.4 0.036 1.2E-06 39.4 3.7 27 72-98 390-416 (520)
55 2je0_A Acidic leucine-rich nuc 94.4 0.042 1.4E-06 32.6 3.5 17 79-95 86-102 (149)
56 3oja_A Leucine-rich immune mol 94.4 0.024 8.3E-07 40.5 2.7 18 78-95 77-94 (487)
57 2je0_A Acidic leucine-rich nuc 94.3 0.038 1.3E-06 32.7 3.2 40 47-98 42-81 (149)
58 4ecn_A Leucine-rich repeat pro 94.3 0.015 5E-07 45.0 1.5 42 48-99 492-535 (876)
59 2z66_A Variable lymphocyte rec 94.3 0.043 1.5E-06 36.3 3.7 22 77-98 219-240 (306)
60 1dce_A Protein (RAB geranylger 94.3 0.028 9.5E-07 41.2 2.9 23 77-99 504-527 (567)
61 1p9a_G Platelet glycoprotein I 94.2 0.065 2.2E-06 35.6 4.4 26 72-98 163-188 (290)
62 3j0a_A TOLL-like receptor 5; m 94.2 0.021 7E-07 43.4 2.1 28 72-99 64-91 (844)
63 4ezg_A Putative uncharacterize 94.1 0.031 1.1E-06 34.9 2.6 21 77-97 108-128 (197)
64 1dce_A Protein (RAB geranylger 94.0 0.043 1.5E-06 40.2 3.5 25 73-98 526-550 (567)
65 2z63_A TOLL-like receptor 4, v 94.0 0.066 2.3E-06 38.2 4.3 28 72-99 509-536 (570)
66 4ay9_X Follicle-stimulating ho 93.9 0.077 2.6E-06 36.0 4.4 26 72-98 193-218 (350)
67 4glp_A Monocyte differentiatio 93.8 0.046 1.6E-06 36.5 3.1 14 81-94 251-264 (310)
68 1a9n_A U2A', U2A'; complex (nu 93.8 0.018 6E-07 35.4 1.0 17 78-94 110-126 (176)
69 3zyi_A Leucine-rich repeat-con 93.8 0.079 2.7E-06 37.2 4.4 22 74-95 116-137 (452)
70 4b8c_D Glucose-repressible alc 93.8 0.045 1.5E-06 41.2 3.3 21 78-99 290-310 (727)
71 3rw6_A Nuclear RNA export fact 93.8 0.025 8.5E-07 37.9 1.7 10 48-57 171-180 (267)
72 1jl5_A Outer protein YOPM; leu 93.8 0.019 6.5E-07 40.8 1.2 19 81-99 396-416 (454)
73 1xku_A Decorin; proteoglycan, 93.7 0.092 3.1E-06 35.1 4.4 41 47-98 76-116 (330)
74 3oja_B Anopheles plasmodium-re 93.7 0.09 3.1E-06 38.3 4.6 27 72-98 138-164 (597)
75 1ozn_A Reticulon 4 receptor; N 93.6 0.077 2.6E-06 34.8 3.9 20 78-97 174-193 (285)
76 3j0a_A TOLL-like receptor 5; m 93.5 0.067 2.3E-06 40.7 3.9 28 72-99 88-115 (844)
77 3vq2_A TLR4, TOLL-like recepto 93.5 0.073 2.5E-06 38.5 3.9 24 74-97 97-120 (606)
78 2z7x_B TOLL-like receptor 1, v 93.4 0.038 1.3E-06 39.2 2.2 17 78-94 66-82 (520)
79 1jl5_A Outer protein YOPM; leu 93.4 0.0028 9.4E-08 45.1 -3.7 27 72-99 26-52 (454)
80 2xot_A Amphoterin-induced prot 93.3 0.083 2.8E-06 36.1 3.8 19 77-95 84-102 (361)
81 1p9a_G Platelet glycoprotein I 93.3 0.12 4.1E-06 34.3 4.4 18 77-94 144-161 (290)
82 2xot_A Amphoterin-induced prot 93.2 0.096 3.3E-06 35.8 3.9 18 78-95 133-150 (361)
83 4glp_A Monocyte differentiatio 93.2 0.041 1.4E-06 36.7 2.0 17 80-96 144-160 (310)
84 3o6n_A APL1; leucine-rich repe 93.1 0.13 4.4E-06 35.3 4.5 20 77-96 137-156 (390)
85 2xwt_C Thyrotropin receptor; s 93.1 0.15 5.3E-06 32.5 4.6 27 72-99 195-222 (239)
86 1ozn_A Reticulon 4 receptor; N 93.1 0.092 3.1E-06 34.4 3.6 17 76-92 75-91 (285)
87 2ell_A Acidic leucine-rich nuc 93.0 0.044 1.5E-06 33.2 1.8 39 48-98 50-88 (168)
88 3a79_B TLR6, VLRB.59, TOLL-lik 93.0 0.11 3.7E-06 37.4 4.1 25 74-99 93-117 (562)
89 3oja_B Anopheles plasmodium-re 92.9 0.13 4.4E-06 37.5 4.5 24 72-95 114-137 (597)
90 2id5_A Lingo-1, leucine rich r 92.9 0.14 4.7E-06 36.0 4.4 27 72-98 95-121 (477)
91 2ell_A Acidic leucine-rich nuc 92.8 0.11 3.6E-06 31.4 3.3 21 77-97 116-136 (168)
92 3rfe_A Platelet glycoprotein I 92.8 0.1 3.4E-06 31.0 3.1 37 48-94 32-68 (130)
93 3t6q_A CD180 antigen; protein- 92.7 0.094 3.2E-06 37.9 3.5 25 74-98 74-98 (606)
94 2xwt_C Thyrotropin receptor; s 92.7 0.19 6.5E-06 32.0 4.7 18 77-94 76-94 (239)
95 2ft3_A Biglycan; proteoglycan, 92.7 0.083 2.8E-06 35.4 3.0 40 48-98 79-118 (332)
96 2z62_A TOLL-like receptor 4, v 92.7 0.11 3.9E-06 33.8 3.6 18 78-95 97-114 (276)
97 3t6q_A CD180 antigen; protein- 92.7 0.091 3.1E-06 38.0 3.4 25 74-98 493-517 (606)
98 2id5_A Lingo-1, leucine rich r 92.6 0.11 3.7E-06 36.5 3.6 20 76-95 75-94 (477)
99 2z81_A CD282 antigen, TOLL-lik 92.5 0.071 2.4E-06 38.0 2.5 25 74-98 490-514 (549)
100 3o53_A Protein LRIM1, AGAP0063 92.4 0.035 1.2E-06 37.2 0.8 19 77-95 76-94 (317)
101 1ziw_A TOLL-like receptor 3; i 92.4 0.16 5.4E-06 37.3 4.3 22 77-98 117-138 (680)
102 1ziw_A TOLL-like receptor 3; i 92.3 0.13 4.4E-06 37.8 3.7 27 72-98 575-601 (680)
103 2o6q_A Variable lymphocyte rec 92.3 0.2 6.9E-06 32.6 4.4 19 77-95 129-147 (270)
104 3o6n_A APL1; leucine-rich repe 92.2 0.21 7E-06 34.2 4.6 22 74-95 158-179 (390)
105 3g06_A SSPH2 (leucine-rich rep 91.8 0.074 2.5E-06 39.5 2.1 26 72-98 276-301 (622)
106 2z63_A TOLL-like receptor 4, v 91.6 0.15 5.2E-06 36.4 3.5 25 74-98 487-511 (570)
107 3cvr_A Invasion plasmid antige 91.6 0.095 3.2E-06 38.6 2.4 27 72-99 222-248 (571)
108 3zyi_A Leucine-rich repeat-con 91.0 0.24 8.2E-06 34.7 3.9 18 77-94 143-160 (452)
109 1a9n_A U2A', U2A'; complex (nu 90.9 0.2 7E-06 30.5 3.1 22 72-93 79-100 (176)
110 3o53_A Protein LRIM1, AGAP0063 90.9 0.25 8.4E-06 33.0 3.7 18 78-95 141-158 (317)
111 3zyj_A Leucine-rich repeat-con 90.6 0.26 9E-06 34.4 3.8 23 74-96 248-270 (440)
112 1xeu_A Internalin C; cellular 90.5 0.29 1E-05 31.9 3.8 36 48-95 64-99 (263)
113 4ezg_A Putative uncharacterize 90.4 0.19 6.4E-06 31.2 2.7 23 77-99 84-106 (197)
114 1ds9_A Outer arm dynein; leuci 90.0 0.017 6E-07 36.1 -2.4 38 48-98 49-86 (198)
115 3zyj_A Leucine-rich repeat-con 89.0 0.36 1.2E-05 33.7 3.5 25 74-98 224-248 (440)
116 1o6v_A Internalin A; bacterial 88.2 0.42 1.4E-05 33.6 3.4 21 78-98 350-370 (466)
117 4fmz_A Internalin; leucine ric 88.1 0.12 4.1E-06 34.7 0.5 22 77-98 307-328 (347)
118 1xeu_A Internalin C; cellular 87.5 0.46 1.6E-05 31.0 3.1 18 78-95 125-142 (263)
119 3rw6_A Nuclear RNA export fact 86.2 0.51 1.8E-05 31.5 2.8 43 47-99 196-238 (267)
120 3bz5_A Internalin-J, INLJ; leu 86.0 0.65 2.2E-05 32.9 3.4 19 77-95 81-99 (457)
121 1m9s_A Internalin B; cell inva 85.1 0.6 2.1E-05 34.5 2.9 18 78-95 172-189 (605)
122 1h6t_A Internalin B; cell adhe 84.6 0.71 2.4E-05 30.5 2.9 18 78-95 175-192 (291)
123 1h6t_A Internalin B; cell adhe 84.5 0.94 3.2E-05 29.9 3.4 18 78-95 109-126 (291)
124 1m9s_A Internalin B; cell inva 84.0 0.85 2.9E-05 33.7 3.3 19 78-96 194-212 (605)
125 1h6u_A Internalin H; cell adhe 83.7 1.1 3.7E-05 29.8 3.5 18 78-95 104-121 (308)
126 1h6u_A Internalin H; cell adhe 83.3 0.89 3E-05 30.2 2.9 18 78-95 192-209 (308)
127 2ca6_A RAN GTPase-activating p 81.9 0.11 3.8E-06 35.6 -2.0 20 78-97 300-319 (386)
128 1o6v_A Internalin A; bacterial 81.5 1.4 4.6E-05 30.9 3.4 18 78-95 109-126 (466)
129 1ds9_A Outer arm dynein; leuci 80.7 0.3 1E-05 30.3 -0.2 23 77-99 136-158 (198)
130 3bz5_A Internalin-J, INLJ; leu 78.9 1.2 4.1E-05 31.5 2.5 18 78-95 209-226 (457)
131 4fmz_A Internalin; leucine ric 78.9 1.3 4.6E-05 29.4 2.6 22 77-98 283-304 (347)
132 2ast_B S-phase kinase-associat 78.4 0.97 3.3E-05 29.9 1.8 18 78-95 90-107 (336)
133 3goz_A Leucine-rich repeat-con 72.9 0.8 2.7E-05 31.1 0.2 18 81-98 80-97 (362)
134 3g06_A SSPH2 (leucine-rich rep 72.6 3.6 0.00012 30.5 3.7 19 79-98 259-277 (622)
135 1z7x_W Ribonuclease inhibitor; 68.0 0.62 2.1E-05 32.3 -1.2 19 78-96 395-413 (461)
136 2ast_B S-phase kinase-associat 66.3 1.6 5.4E-05 28.9 0.6 22 77-98 114-135 (336)
137 2ca6_A RAN GTPase-activating p 64.1 3.7 0.00013 27.8 2.1 10 48-57 33-42 (386)
138 3goz_A Leucine-rich repeat-con 53.9 5.5 0.00019 26.9 1.5 19 78-96 281-299 (362)
139 3ogk_B Coronatine-insensitive 52.5 1.9 6.6E-05 30.8 -1.0 16 79-94 486-501 (592)
140 3sb4_A Hypothetical leucine ri 49.4 13 0.00045 24.6 2.9 23 72-94 115-137 (329)
141 1z7x_W Ribonuclease inhibitor; 47.1 9.7 0.00033 26.2 2.0 19 77-95 109-127 (461)
142 1io0_A Tropomodulin; LRR prote 46.9 8.9 0.0003 23.4 1.6 43 47-94 36-78 (185)
143 3e4g_A ATP synthase subunit S, 44.2 16 0.00053 22.8 2.4 36 47-92 61-96 (176)
144 3un9_A NLR family member X1; l 36.0 16 0.00054 25.1 1.6 16 79-94 209-224 (372)
145 3ox7_P MH027; urokinase-type p 32.0 15 0.0005 14.7 0.5 10 32-41 5-14 (23)
146 2ra8_A Uncharacterized protein 30.7 17 0.00057 25.0 1.0 16 80-95 278-293 (362)
147 1pgv_A TMD-1, tropomodulin TMD 29.0 25 0.00087 22.2 1.6 17 79-95 96-112 (197)
148 4fdw_A Leucine rich hypothetic 26.9 62 0.0021 22.3 3.4 23 72-94 171-193 (401)
149 2p1m_B Transport inhibitor res 24.2 35 0.0012 24.2 1.7 18 78-95 153-170 (594)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=8.5e-13 Score=99.12 Aligned_cols=86 Identities=22% Similarity=0.349 Sum_probs=60.6
Q ss_pred hHHHHHhhcccCCcccccccccCCcccCCCCCCceeeeEEecCCCCcEEEEEcCcC-CcCC-----CCCCC---------
Q 037422 2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCSWERIKCNATTGWVMELSLSDA-IRVN-----SNDVS--------- 66 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~w~gi~C~~~~~~v~~l~l~~~-~~~~-----~~l~~--------- 66 (100)
||++||+.+.++ . .+.+|. .+.+||.|.||.|+ .++|+.|++++. +.|. +.+..
T Consensus 16 all~~k~~~~~~---~----~l~~W~--~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 16 QLISFKDVLPDK---N----LLPDWS--SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp HHHHHHTTCSCT---T----SSTTCC--TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred HHHHHHhhCCCc---c----cccCCC--CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 789999999866 1 488995 56789999999998 589999999986 4431 00100
Q ss_pred --CCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 67 --DGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 67 --~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
.+...++.. +..+++|++|||++|.|+|.||.
T Consensus 85 ~~~~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~ 118 (768)
T 3rgz_A 85 SNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTT 118 (768)
T ss_dssp TTSCEEECCCC-CCCCTTCCEEECCSSEEEEEGGG
T ss_pred cCCCcCCCchh-hccCCCCCEEECCCCcCCCcCCC
Confidence 122112233 47888888888888888887764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.31 E-value=1.7e-12 Score=88.43 Aligned_cols=47 Identities=38% Similarity=0.709 Sum_probs=38.2
Q ss_pred hHHHHHhhcccCCcccccccccCCcccCCCCCCce--eeeEEecCCC--CcEEEEEcCcC
Q 037422 2 GLLEIKAFIKSVSDMQYADAILVSWVDNRTSDCCS--WERIKCNATT--GWVMELSLSDA 57 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~C~--w~gi~C~~~~--~~v~~l~l~~~ 57 (100)
||++||+.+.++ . .+.+|. ...+||. |.||.|+... ++|+.|++.++
T Consensus 10 aL~~~k~~~~~~---~----~l~~W~--~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~ 60 (313)
T 1ogq_A 10 ALLQIKKDLGNP---T----TLSSWL--PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60 (313)
T ss_dssp HHHHHHHHTTCC---G----GGTTCC--TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC
T ss_pred HHHHHHHhcCCc---c----cccCCC--CCCCCCcCCCcceEeCCCCCCceEEEEECCCC
Confidence 789999999765 1 478995 4678998 9999997543 79999999987
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=7.7e-11 Score=90.31 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=59.5
Q ss_pred hHHHHHhhcccCCcccccccccCCcccCC---CCCC--cee------------eeEEecCCCCcEEEEEcCcCCcCCCCC
Q 037422 2 GLLEIKAFIKSVSDMQYADAILVSWVDNR---TSDC--CSW------------ERIKCNATTGWVMELSLSDAIRVNSND 64 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~~~---~~~~--C~w------------~gi~C~~~~~~v~~l~l~~~~~~~~~l 64 (100)
||++||+.+.++ +|.... ..+| |.| .||.|+. .+||++|+|.++ .+
T Consensus 273 ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~-----~L 335 (876)
T 4ecn_A 273 ALKAIWEALDGK-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF-----GA 335 (876)
T ss_dssp HHHHHHHHTTGG-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT-----CC
T ss_pred HHHHHHHHcCCC-----------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC-----CC
Confidence 688999887432 674211 1355 999 9999985 589999999996 66
Q ss_pred CCCCCcccCCCCCCCCCCCcEEeC-cCCccccccC
Q 037422 65 VSDGFPIINMSLFVPFQELHVLDL-WNNRFEGWEE 98 (100)
Q Consensus 65 ~~~g~~~i~~~~~~~l~~L~~L~L-s~N~~sG~iP 98 (100)
.|. +|+++ +.|++|++||| +.|.++|.+|
T Consensus 336 --~G~--ip~~l-~~L~~L~~LdLss~N~lsG~~~ 365 (876)
T 4ecn_A 336 --KGR--VPDAI-GQLTELKVLSFGTHSETVSGRL 365 (876)
T ss_dssp --EEE--ECGGG-GGCTTCCEEESCCTTHHHHTTC
T ss_pred --CCc--CchHH-hccccceEeeeccccccccccc
Confidence 677 87775 99999999999 9999999865
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=5.1e-10 Score=82.69 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=57.6
Q ss_pred hHHHHHhhcccCCcc--cccccccCCcccCCCCCCcee---eeEEecCCCCcEEEEEcCcCCcCCCCCCCCCCcccCCCC
Q 037422 2 GLLEIKAFIKSVSDM--QYADAILVSWVDNRTSDCCSW---ERIKCNATTGWVMELSLSDAIRVNSNDVSDGFPIINMSL 76 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~--~~~~~~l~~W~~~~~~~~C~w---~gi~C~~~~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~ 76 (100)
||.+++..+..+.-. +.......+|. ...++|.| .||.|+. .++|++|+|.+. .+ .|. +|+++
T Consensus 34 aL~~~~~~~~~~~w~~~~~~~~~~~~W~--~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~-----~l--~g~--lp~~l 101 (636)
T 4eco_A 34 ALKEIWDALNGKNWSQQGFGTQPGANWN--FNKELDMWGAQPGVSLNS-NGRVTGLSLEGF-----GA--SGR--VPDAI 101 (636)
T ss_dssp HHHHHHHHTTGGGCCCCC------CCCC--CSSCGGGTTCCTTEEECT-TCCEEEEECTTS-----CC--EEE--ECGGG
T ss_pred HHHHHHHHcCCCCcccCCcCCccCCCCC--CCCCcccccCCCCeEEcC-CCCEEEEEecCc-----cc--CCc--CChHH
Confidence 677888777544100 00000123795 56889999 9999985 489999999996 66 677 87775
Q ss_pred CCCCCCCcEEeCcCCcc
Q 037422 77 FVPFQELHVLDLWNNRF 93 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~ 93 (100)
+.|++|++|||++|.+
T Consensus 102 -~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 102 -GQLTELEVLALGSHGE 117 (636)
T ss_dssp -GGCTTCCEEESCCGGG
T ss_pred -hcCccceEEECcCCcc
Confidence 9999999999999977
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.23 E-value=1.2e-07 Score=64.88 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=34.2
Q ss_pred hHHHHHhhcccCCcccccccccCCccc--CCCCCCceeeeEEecC--------CCCcEEEEEcCcC
Q 037422 2 GLLEIKAFIKSVSDMQYADAILVSWVD--NRTSDCCSWERIKCNA--------TTGWVMELSLSDA 57 (100)
Q Consensus 2 ~Ll~~k~~l~~~~~~~~~~~~l~~W~~--~~~~~~C~w~gi~C~~--------~~~~v~~l~l~~~ 57 (100)
+|++||..+... .. +....|.. ....++|.|.|+.|.. ...+|+.|++.++
T Consensus 31 aLl~~k~~~~~~--~~---~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n 91 (328)
T 4fcg_A 31 VLSQWQRHYNAD--RN---RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV 91 (328)
T ss_dssp HHHHHHHHHHHC--CT---THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred HHHHHHHhccCC--ch---hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC
Confidence 688999877432 11 13567831 1356789999999942 2368899999886
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.48 E-value=0.00024 Score=45.95 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=41.5
Q ss_pred CCCCCceeeeEEecCC---------CCcEEEEEcCcC-CcCC--CCC---CC----------CCCcccCCCCCCCCCCCc
Q 037422 30 RTSDCCSWERIKCNAT---------TGWVMELSLSDA-IRVN--SND---VS----------DGFPIINMSLFVPFQELH 84 (100)
Q Consensus 30 ~~~~~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~--~~l---~~----------~g~~~i~~~~~~~l~~L~ 84 (100)
.....|.|.+|.|... ...++.|+++++ +.+. ..+ .. -.. +++..|..+++|+
T Consensus 14 ~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 14 PSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLT 91 (229)
T ss_dssp CTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCC
T ss_pred CCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcC
Confidence 3678899999999642 134677888876 3331 001 00 112 4445557888888
Q ss_pred EEeCcCCcccccc
Q 037422 85 VLDLWNNRFEGWE 97 (100)
Q Consensus 85 ~L~Ls~N~~sG~i 97 (100)
+|+|++|.|++-.
T Consensus 92 ~L~Ls~N~l~~l~ 104 (229)
T 3e6j_A 92 VLDLGTNQLTVLP 104 (229)
T ss_dssp EEECCSSCCCCCC
T ss_pred EEECCCCcCCccC
Confidence 8888888887543
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.38 E-value=8.1e-05 Score=55.98 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=10.6
Q ss_pred CCCCCCcEEeCcCCccccccC
Q 037422 78 VPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+.++.|++|||++|+++|.||
T Consensus 677 ~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 677 GDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp GGCTTCCEEECCSSCCEECCC
T ss_pred hCCCCCCEEECCCCcccCcCC
Confidence 445555555555555555444
No 8
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.37 E-value=0.00018 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=16.8
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~ 96 (100)
+++..|..|++|+.|||++|+|++-
T Consensus 71 ~~~~~~~~l~~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 71 VAPDAFHFTPRLSRLNLSFNALESL 95 (347)
T ss_dssp ECTTGGGSCSCCCEEECCSSCCSCC
T ss_pred eCHHHhcCCcCCCEEeCCCCcccee
Confidence 3444457777777777777777753
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.26 E-value=0.00052 Score=42.43 Aligned_cols=65 Identities=18% Similarity=0.337 Sum_probs=36.4
Q ss_pred CceeeeEEecCC---------CCcEEEEEcCcC-CcCC-----CCCCC------C--CCcccCCCCCCCCCCCcEEeCcC
Q 037422 34 CCSWERIKCNAT---------TGWVMELSLSDA-IRVN-----SNDVS------D--GFPIINMSLFVPFQELHVLDLWN 90 (100)
Q Consensus 34 ~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~-----~~l~~------~--g~~~i~~~~~~~l~~L~~L~Ls~ 90 (100)
.|.|.++.|... ...++.|++.++ +.+. ..+.. . ....+++..+..+++|++|+|++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 478888888631 125677777775 3321 00000 0 00014444457788888888888
Q ss_pred CccccccC
Q 037422 91 NRFEGWEE 98 (100)
Q Consensus 91 N~~sG~iP 98 (100)
|.+++..|
T Consensus 86 N~l~~~~~ 93 (177)
T 2o6r_A 86 NKLQSLPN 93 (177)
T ss_dssp SCCCCCCT
T ss_pred CCccccCH
Confidence 88876443
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.23 E-value=0.00056 Score=43.26 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=36.8
Q ss_pred CCceeeeEEecCC---------CCcEEEEEcCcC-CcCC-----CCCCC------CC--CcccCCCCCCCCCCCcEEeCc
Q 037422 33 DCCSWERIKCNAT---------TGWVMELSLSDA-IRVN-----SNDVS------DG--FPIINMSLFVPFQELHVLDLW 89 (100)
Q Consensus 33 ~~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~-----~~l~~------~g--~~~i~~~~~~~l~~L~~L~Ls 89 (100)
..|.|.+|.|... ..+++.|++.++ +.+. ..+.. .+ ...+++..|..+++|++|+|+
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 3478999999642 125778888876 3321 00100 00 001444445777888888888
Q ss_pred CCccccc
Q 037422 90 NNRFEGW 96 (100)
Q Consensus 90 ~N~~sG~ 96 (100)
+|.+++.
T Consensus 85 ~n~l~~~ 91 (208)
T 2o6s_A 85 TNQLQSL 91 (208)
T ss_dssp SSCCCCC
T ss_pred CCcCCcc
Confidence 8887753
No 11
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.10 E-value=0.00071 Score=42.59 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=17.1
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..|..+++|++|+|++|.+++..|
T Consensus 71 ~~~~~~l~~L~~L~Ls~N~l~~~~~ 95 (192)
T 1w8a_A 71 PNAFEGASHIQELQLGENKIKEISN 95 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECS
T ss_pred HhHcCCcccCCEEECCCCcCCccCH
Confidence 3334777777777777777776554
No 12
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=96.96 E-value=0.00067 Score=44.68 Aligned_cols=22 Identities=18% Similarity=0.397 Sum_probs=12.6
Q ss_pred CCCCCCCCCCcEEeCcCCcccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+..|..+++|++|+|++|.+++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~ 99 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQA 99 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCC
T ss_pred hhhhcCCCCCCEEECCCCcCCc
Confidence 3334556666666666666554
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=96.92 E-value=0.00085 Score=48.01 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCcEEeCcCCccccccC
Q 037422 73 NMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 73 ~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
++..|..+++|++|||++|.+++..|
T Consensus 66 ~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 66 EGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred ChhhccccccCCEEECCCCccCccCH
Confidence 33334677777777777777766543
No 14
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.89 E-value=0.00078 Score=46.08 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=40.6
Q ss_pred ceeeeEEecCC---------CCcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 35 CSWERIKCNAT---------TGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 35 C~w~gi~C~~~---------~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
|.+..|.|... ...++.|+|+++ .+ . . ||+..|..|++|++|+|++|.+.+.||.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N-----~i--~-~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~ 72 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLT-----KL--R-V--IQKGAFSGFGDLEKIEISQNDVLEVIEA 72 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESC-----CC--S-E--ECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCC-----cC--C-C--cCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence 77888999631 124667777775 44 2 2 6666569999999999999999888875
No 15
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.88 E-value=0.002 Score=39.82 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=18.3
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..|..+++|++|+|++|+|++-.|
T Consensus 69 l~~~~f~~l~~L~~L~L~~N~l~~~~~ 95 (170)
T 3g39_A 69 LPAGVFDKLTQLTQLSLNDNQLKSIPR 95 (170)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cChhhccCCCCCCEEECCCCccCEeCH
Confidence 445545777888888888887776433
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.80 E-value=0.00052 Score=46.32 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.4
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+|.. +..+++|++|+|++|.|+|.||.
T Consensus 260 ~p~~-l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 260 LPQG-LTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCGG-GGGCTTCCEEECCSSEEEEECCC
T ss_pred CChH-HhcCcCCCEEECcCCcccccCCC
Confidence 5444 48899999999999999999985
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=96.75 E-value=0.0019 Score=45.14 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=20.5
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..|..+++|++|+|++|.+++.+|.
T Consensus 70 i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 70 IRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred ECcccccccccCCEEeCCCCccCccChh
Confidence 5455457888888888888888776663
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=96.69 E-value=0.0028 Score=40.66 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=33.2
Q ss_pred CceeeeEEecCC---------CCcEEEEEcCcC-CcCC-----CCCCC------CC--CcccCCCCCCCCCCCcEEeCcC
Q 037422 34 CCSWERIKCNAT---------TGWVMELSLSDA-IRVN-----SNDVS------DG--FPIINMSLFVPFQELHVLDLWN 90 (100)
Q Consensus 34 ~C~w~gi~C~~~---------~~~v~~l~l~~~-~~~~-----~~l~~------~g--~~~i~~~~~~~l~~L~~L~Ls~ 90 (100)
.|.|..+.|... ...++.|++.++ +... ..+.+ .+ ...+.+..|..+++|++|+|++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 477888888631 125677888776 3220 00000 00 0013333357777777777777
Q ss_pred Cccc
Q 037422 91 NRFE 94 (100)
Q Consensus 91 N~~s 94 (100)
|.++
T Consensus 90 N~l~ 93 (220)
T 2v9t_B 90 NKIT 93 (220)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 7776
No 19
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.60 E-value=0.0023 Score=40.21 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=15.4
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..|..+++|++|+|++|++++.+|
T Consensus 95 ~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 95 NKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp SSSSTTCTTCCEEECCSSCCCEECT
T ss_pred HHHhcCCCCCCEEECCCCcCCeeCH
Confidence 3334666666666666666666555
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=96.57 E-value=0.0034 Score=41.74 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=35.1
Q ss_pred CCceeeeEEecCC---------CCcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422 33 DCCSWERIKCNAT---------TGWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 33 ~~C~w~gi~C~~~---------~~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
..|.|.++.|... ...++.|+++++ .+ . . +++..|..+++|++|+|++|.++
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n-----~l--~-~--i~~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESN-----KL--Q-S--LPHGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSS-----CC--C-C--CCTTTTTTCTTCSEEECCSSCCC
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCC-----cc--C-c--cCHhHhhccccCCEEECCCCccC
Confidence 3478999999642 125778888775 34 2 2 55554577788888888888766
No 21
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.42 E-value=0.0041 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=16.9
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~ 96 (100)
+|+..|..+++|++|+|++|+|++-
T Consensus 72 i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 72 IPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cChhHhCCcchhhEEECCCCcccee
Confidence 4444456777777777777777753
No 22
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=96.40 E-value=0.004 Score=42.35 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=17.0
Q ss_pred CCCCceeeeEEecCC-----------CCcEEEEEcCcC
Q 037422 31 TSDCCSWERIKCNAT-----------TGWVMELSLSDA 57 (100)
Q Consensus 31 ~~~~C~w~gi~C~~~-----------~~~v~~l~l~~~ 57 (100)
....|.|.++ |+.. ...++.|+++++
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n 62 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNN 62 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTS
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCC
Confidence 4567899987 6521 125778888876
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=96.39 E-value=0.0023 Score=43.51 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+|.. +..+++|++|+|++|.+.|.||.
T Consensus 269 ~p~~-~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 269 LPLD-IHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCTT-GGGCTTCCEEECTTCTTCCCCCG
T ss_pred cchh-hhcCCCCCEEeCCCCCchhhccH
Confidence 5444 47888889999999888888885
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.37 E-value=0.0044 Score=38.23 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=11.4
Q ss_pred CCCCCCCcEEeCcCCccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~ 96 (100)
|..+++|++|+|++|.|++.
T Consensus 98 ~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 98 FDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp TTTCTTCCEEECCSSCBCTT
T ss_pred hcCCCCCCEEEeCCCCCCCC
Confidence 35556666666666655543
No 25
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.30 E-value=0.0057 Score=37.96 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=11.9
Q ss_pred CCCCCCCCCCcEEeCcCCcccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+..|..+++|++|+|++|.|..
T Consensus 98 ~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp TTTTTTCTTCSEEECCSSCBCT
T ss_pred HHHhccccCCCEEEeCCCCccc
Confidence 3333555666666666665543
No 26
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.25 E-value=0.003 Score=42.79 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=39.3
Q ss_pred ceeeeEEecCC-----------CCcEEEEEcCc-CCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 35 CSWERIKCNAT-----------TGWVMELSLSD-AIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 35 C~w~gi~C~~~-----------~~~v~~l~l~~-~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
|.|..|.|... ..+++.|+|++ + .+ .+ +++..|..|++|+.|+|++|+|+|.+|.
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-----~l--~~---~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQ-----HL--QH---LELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCS-----SC--CE---ECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCC-----CC--CC---cChhHhccccCCCEEECCCCccceeCHH
Confidence 78888888642 02367777774 4 44 22 5555568999999999999999997763
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=96.25 E-value=0.0053 Score=39.88 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=13.9
Q ss_pred CCCCCCCCCCcEEeCcCCccccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~ 96 (100)
+..|..+++|++|+|++|.+++.
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~ 98 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASL 98 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCC
T ss_pred HhHhccCCcCCEEECCCCccccc
Confidence 33346666677777777766643
No 28
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.80 E-value=0.013 Score=37.44 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=14.2
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
|..+++|++|+|++|.+++.+|
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCT
T ss_pred cCCCccCCEEECCCCcCCEECH
Confidence 4666666777777666666544
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.79 E-value=0.014 Score=36.68 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=8.7
Q ss_pred CCCCCCcEEeCcCCccc
Q 037422 78 VPFQELHVLDLWNNRFE 94 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~s 94 (100)
..+++|++|+|++|.++
T Consensus 99 ~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 99 DGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred CCCCCCCEEECCCCCCC
Confidence 44555555555555544
No 30
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=95.77 E-value=0.01 Score=38.05 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..|..+++|++|+|++|.+++.+|.
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred cCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 3444457888889999999888876653
No 31
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.72 E-value=0.0078 Score=43.10 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=10.2
Q ss_pred CCCCCCcEEeCcCCcccccc
Q 037422 78 VPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~i 97 (100)
..+++|++|+|++|.|++.+
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEE
T ss_pred cCCCCCCEEECCCCCCCCcC
Confidence 44555555555555555443
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=95.71 E-value=0.024 Score=38.04 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=16.2
Q ss_pred CceeeeEEecCC---------CCcEEEEEcCcC
Q 037422 34 CCSWERIKCNAT---------TGWVMELSLSDA 57 (100)
Q Consensus 34 ~C~w~gi~C~~~---------~~~v~~l~l~~~ 57 (100)
.|.|..+.|... ...++.++++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n 62 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNN 62 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCC
Confidence 468999999631 124677888776
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=95.67 E-value=0.016 Score=37.26 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=8.3
Q ss_pred CCCCCCcEEeCcCCccc
Q 037422 78 VPFQELHVLDLWNNRFE 94 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~s 94 (100)
..+++|++|+|++|.|+
T Consensus 109 ~~l~~L~~L~Ls~N~l~ 125 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT 125 (229)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred CcchhhCeEeccCCccc
Confidence 44444555555544444
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.67 E-value=0.0095 Score=42.87 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=21.2
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..|..+++|++|||++|++++.+|.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 4444457888888888888888887764
No 35
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.61 E-value=0.016 Score=35.54 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=20.6
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~ 96 (100)
+++..+..+++|++|+|++|.|++-
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cCHHHhhCCcccCEEECcCCcceEe
Confidence 4555568999999999999999853
No 36
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=95.55 E-value=0.019 Score=36.68 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=11.6
Q ss_pred CCCCCCCcEEeCcCCccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~ 96 (100)
|..+++|++|+|++|.|++.
T Consensus 124 ~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 124 FQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp TTTCTTCCEEECCSSCCSCC
T ss_pred cCCCCCCCEEECCCCcCCEE
Confidence 35556666666666665543
No 37
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=95.50 E-value=0.0067 Score=44.76 Aligned_cols=42 Identities=10% Similarity=0.177 Sum_probs=31.5
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCc-ccc-ccCC
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNR-FEG-WEEN 99 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~-~sG-~iP~ 99 (100)
.++.+++.++ .+ .|. +|.. |..+++|++|+|++|. |+| .||.
T Consensus 250 ~L~~L~L~~n-----~l--~~~--~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 250 DLTDVEVYNC-----PN--LTK--LPTF-LKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp TCCEEEEECC-----TT--CSS--CCTT-TTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred CCCEEEecCC-----cC--Ccc--ChHH-HhcCCCCCEEECcCCCCCccccchH
Confidence 4666777664 45 555 7655 4899999999999998 999 7774
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=95.40 E-value=0.02 Score=38.51 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=16.0
Q ss_pred ceeeeEEecCC---------CCcEEEEEcCcC
Q 037422 35 CSWERIKCNAT---------TGWVMELSLSDA 57 (100)
Q Consensus 35 C~w~gi~C~~~---------~~~v~~l~l~~~ 57 (100)
|.|..+.|... ...++.|++.++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n 64 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN 64 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCC
Confidence 78999999631 125677888775
No 39
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=95.32 E-value=0.0024 Score=47.04 Aligned_cols=67 Identities=16% Similarity=0.104 Sum_probs=38.6
Q ss_pred cCCcccCCCCCCc-----eeeeE-EecCCCCcEEEEEcCcC-CcCCC-CCCC-------CCC--cccCCCCCCCCCCCcE
Q 037422 23 LVSWVDNRTSDCC-----SWERI-KCNATTGWVMELSLSDA-IRVNS-NDVS-------DGF--PIINMSLFVPFQELHV 85 (100)
Q Consensus 23 l~~W~~~~~~~~C-----~w~gi-~C~~~~~~v~~l~l~~~-~~~~~-~l~~-------~g~--~~i~~~~~~~l~~L~~ 85 (100)
+..|. ....+| .|.++ .|.. .+++.|++.++ +.+.+ .+.. .+. ..|| ..+++|++
T Consensus 33 l~~W~--~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip----~~l~~L~~ 104 (571)
T 3cvr_A 33 WDKWE--KQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP----ELPASLEY 104 (571)
T ss_dssp HHHHH--TTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC----CCCTTCCE
T ss_pred HHHHh--ccCCccccccchhhhcccccc--CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc----cccCCCCE
Confidence 45675 355677 69999 6753 57888999886 33311 0100 000 0032 23567777
Q ss_pred EeCcCCccccccC
Q 037422 86 LDLWNNRFEGWEE 98 (100)
Q Consensus 86 L~Ls~N~~sG~iP 98 (100)
|+|++|.|++ ||
T Consensus 105 L~Ls~N~l~~-ip 116 (571)
T 3cvr_A 105 LDACDNRLST-LP 116 (571)
T ss_dssp EECCSSCCSC-CC
T ss_pred EEccCCCCCC-cc
Confidence 7777777776 65
No 40
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=95.24 E-value=0.025 Score=37.87 Aligned_cols=22 Identities=14% Similarity=-0.061 Sum_probs=15.4
Q ss_pred CCCCCCCcEEeCcCCccccccCC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+..+++|++|+|++|.++ .||.
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCS
T ss_pred hhhcCCCCEEECCCCccC-hhhh
Confidence 355677777777777777 6664
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=95.22 E-value=0.021 Score=39.80 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=12.6
Q ss_pred CCCCCCCcEEeCcCCcccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~i 97 (100)
|..+++|++|+|++|.+++.+
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~ 119 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAV 119 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHH
T ss_pred ccCcccCCEEeCCCCCCCccc
Confidence 356666666666666665543
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=95.14 E-value=0.026 Score=37.03 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=18.2
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..+..+++|++|+|++|.|.|.+|
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCHHHHhCCcCCCEEEccCCCccccCc
Confidence 334445777788888887777766655
No 43
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=95.12 E-value=0.031 Score=35.04 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=17.3
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..+..+++|+.|+|++|.+.+..|
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred eCHHHhccCCCccEEEecCCCeecCCC
Confidence 334444667777777777776666554
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=95.07 E-value=0.02 Score=41.19 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=15.7
Q ss_pred cCCCCCCCCCCCcEEeCcCCcccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
|++..|..|++|++|+|++|++++
T Consensus 91 i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 91 IEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred cChhHhcCCCCCCEEEccCCcCCC
Confidence 444445677777777777777665
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=94.99 E-value=0.036 Score=35.89 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=11.6
Q ss_pred CCCCCCCcEEeCcCCccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~ 96 (100)
|..+++|++|+|++|.+++.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCC
T ss_pred cCcCcCCCEEECCCCcCCcc
Confidence 35556666666666665543
No 46
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=94.85 E-value=0.038 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=8.8
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.+++
T Consensus 75 ~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 75 SNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TTCTTCCEEECCSSCCCB
T ss_pred cCCCCCCEEECCCCccCE
Confidence 444455555555554444
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=94.82 E-value=0.057 Score=35.23 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=22.8
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..+..+++|+.|+|++|.|++..|
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCHhHhcccccccEEEccCCcccccCC
Confidence 556656889999999999999998765
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=94.68 E-value=0.019 Score=38.43 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=13.5
Q ss_pred CCCCCCcEEeCcCCccccc
Q 037422 78 VPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~ 96 (100)
..+++|++|+|++|.+++.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~ 136 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR 136 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS
T ss_pred hcCCCccEEEccCCCCcch
Confidence 6677777777777777664
No 49
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=94.61 E-value=0.047 Score=35.78 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=19.3
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..+..+++|++|+|++|.+++..|
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCH
Confidence 344445778888888888888887554
No 50
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=94.61 E-value=0.016 Score=43.67 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
||.. |..|++|++|+|++|.|+|.+|.
T Consensus 308 lp~~-~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 308 LPWE-FGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CCSS-TTSCTTCCCEECTTSCCCSHHHH
T ss_pred cChh-hhcCCCccEEeCCCCccCCCChH
Confidence 6555 58888999999999998887763
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=94.56 E-value=0.039 Score=39.78 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=17.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+|...+..+++|+.|+|++|.++|.+|
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred cChhhhcCcccCCEEECCCCCCCcchh
Confidence 444444666777777777777766655
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=94.47 E-value=0.03 Score=37.95 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=30.4
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++.++++++ .+ . . +|...|..+++|++|+|++|.|++..|
T Consensus 278 ~L~~L~Ls~N-----~l--~-~--i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 278 GLLELEFSRN-----QL--K-S--VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSS-----CC--C-C--CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCC-----CC--C-c--cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 4566666664 44 2 3 666656899999999999999998765
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=94.40 E-value=0.073 Score=38.47 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=20.6
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..|..+++|++|+|++|.+++.+|.
T Consensus 71 i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 71 IEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred cCHHHhhchhhcCEeECCCCcccccChh
Confidence 4344457888888888888888876664
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=94.40 E-value=0.036 Score=39.38 Aligned_cols=27 Identities=11% Similarity=-0.160 Sum_probs=17.0
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+|...+..+++|+.|+|++|.+++.+|
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred cccchhccCccCCEEECcCCCCCcchh
Confidence 443334666777777777777766655
No 55
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=94.40 E-value=0.042 Score=32.58 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=8.4
Q ss_pred CCCCCcEEeCcCCcccc
Q 037422 79 PFQELHVLDLWNNRFEG 95 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~sG 95 (100)
.+++|++|+|++|.+++
T Consensus 86 ~l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 86 KCPNLTHLNLSGNKIKD 102 (149)
T ss_dssp HCTTCCEEECTTSCCCS
T ss_pred hCCCCCEEECCCCcCCC
Confidence 34455555555555443
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.36 E-value=0.024 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=9.3
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|+|++|.|++
T Consensus 77 ~~l~~L~~L~Ls~N~l~~ 94 (487)
T 3oja_A 77 ESLSTLRTLDLNNNYVQE 94 (487)
T ss_dssp TTCTTCCEEECCSSEEEE
T ss_pred ccCCCCCEEEecCCcCCC
Confidence 455555555555555543
No 57
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=94.34 E-value=0.038 Score=32.75 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=30.3
Q ss_pred CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
.+++.++++++ .+ .+ + .. +..+++|++|+|++|.+++.+|
T Consensus 42 ~~L~~L~l~~n-----~l--~~---~-~~-~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 42 EELEFLSTINV-----GL--TS---I-AN-LPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp TTCCEEECTTS-----CC--CC---C-TT-CCCCTTCCEEECCSSCCCSCTH
T ss_pred CCCcEEECcCC-----CC--CC---c-hh-hhcCCCCCEEECCCCcccchHH
Confidence 46788888875 44 22 3 33 4889999999999999998765
No 58
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=94.31 E-value=0.015 Score=44.99 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=29.8
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCc-ccc-ccCC
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNR-FEG-WEEN 99 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~-~sG-~iP~ 99 (100)
+++.|++.++ .+ .|. +|.. |..|++|+.|+|++|. |+| .||.
T Consensus 492 ~L~~L~Ls~N-----~l--~~~--iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 492 DLTDVELYNC-----PN--MTQ--LPDF-LYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp TCCEEEEESC-----TT--CCS--CCGG-GGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred CCCEEECcCC-----CC--Ccc--ChHH-HhCCCCCCEEECcCCCCcccccchH
Confidence 4566666664 44 555 6555 4888899999999997 888 7763
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=94.29 E-value=0.043 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=15.3
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+++|++|+|++|.+++.+|
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSS
T ss_pred ccCcccCCEeECCCCCCcccCH
Confidence 4667777777777777777655
No 60
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.28 E-value=0.028 Score=41.22 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=17.7
Q ss_pred CCCCCCCcEEeCcCCcccccc-CC
Q 037422 77 FVPFQELHVLDLWNNRFEGWE-EN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~i-P~ 99 (100)
+..|++|+.|+|++|.|++.+ |.
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~ 527 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQ 527 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTG
T ss_pred cCCCCCCcEEECCCCCCCCCCCcH
Confidence 478888888888888888775 53
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=94.19 E-value=0.065 Score=35.65 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=17.2
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..|..+++|+.|+|++|.|+ .||
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 44444566777777777777776 454
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=94.17 E-value=0.021 Score=43.44 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=22.7
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..|..|++|++|+|++|.+++.+|.
T Consensus 64 i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 64 IDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp ECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred cCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 5555568999999999999999887764
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=94.12 E-value=0.031 Score=34.91 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=13.6
Q ss_pred CCCCCCCcEEeCcCCcccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~i 97 (100)
+..+++|++|+|++|.+++.+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~ 128 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSI 128 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGG
T ss_pred hcCCCCCCEEEecCCccCcHh
Confidence 366667777777777666543
No 64
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.00 E-value=0.043 Score=40.22 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCcEEeCcCCccccccC
Q 037422 73 NMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 73 ~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
|.. |..|++|+.|+|++|.|++.+|
T Consensus 526 p~~-l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 526 IQP-LVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TGG-GGGCTTCCEEECTTSGGGGSSS
T ss_pred cHH-HhcCCCCCEEEecCCcCCCCcc
Confidence 444 5899999999999999999866
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=93.98 E-value=0.066 Score=38.23 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=21.7
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..+..+++|+.|++++|.|+|.+|.
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 3445457888899999999998888774
No 66
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=93.89 E-value=0.077 Score=36.05 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
||+..|..+++|++|||++|+|+. ||
T Consensus 193 i~~~~f~~l~~L~~LdLs~N~l~~-lp 218 (350)
T 4ay9_X 193 LPNDVFHGASGPVILDISRTRIHS-LP 218 (350)
T ss_dssp CCTTTTTTEECCSEEECTTSCCCC-CC
T ss_pred CCHHHhccCcccchhhcCCCCcCc-cC
Confidence 666667899999999999999874 44
No 67
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=93.85 E-value=0.046 Score=36.46 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=7.1
Q ss_pred CCCcEEeCcCCccc
Q 037422 81 QELHVLDLWNNRFE 94 (100)
Q Consensus 81 ~~L~~L~Ls~N~~s 94 (100)
++|++|+|++|+|+
T Consensus 251 ~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 251 SALNSLNLSFAGLE 264 (310)
T ss_dssp TTCCCEECCSSCCC
T ss_pred CcCCEEECCCCCCC
Confidence 35555555555554
No 68
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=93.82 E-value=0.018 Score=35.41 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=8.1
Q ss_pred CCCCCCcEEeCcCCccc
Q 037422 78 VPFQELHVLDLWNNRFE 94 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~s 94 (100)
..+++|+.|+|++|.++
T Consensus 110 ~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 110 ASLKSLTYLCILRNPVT 126 (176)
T ss_dssp GGCTTCCEEECCSSGGG
T ss_pred hcCCCCCEEEecCCCCC
Confidence 44444555555555443
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=93.81 E-value=0.079 Score=37.18 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=14.7
Q ss_pred CCCCCCCCCCcEEeCcCCcccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+..|..+++|++|+|++|.+++
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 116 VGAFNGLASLNTLELFDNWLTV 137 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSB
T ss_pred hhhccCcccCCEEECCCCcCCc
Confidence 3344677777777777777764
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.81 E-value=0.045 Score=41.22 Aligned_cols=21 Identities=10% Similarity=-0.035 Sum_probs=12.1
Q ss_pred CCCCCCcEEeCcCCccccccCC
Q 037422 78 VPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
..|++|++|+|++|.|+ .||.
T Consensus 290 ~~l~~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp GGGTTCSEEECCSSCCC-CCCS
T ss_pred cCCCCCCEEECCCCCCC-ccCh
Confidence 55666666666666554 4553
No 71
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.76 E-value=0.025 Score=37.93 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=7.5
Q ss_pred cEEEEEcCcC
Q 037422 48 WVMELSLSDA 57 (100)
Q Consensus 48 ~v~~l~l~~~ 57 (100)
.+..|+|+++
T Consensus 171 ~L~~L~Ls~N 180 (267)
T 3rw6_A 171 ELLSLNLSNN 180 (267)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEECCCC
Confidence 5777888876
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=93.75 E-value=0.019 Score=40.78 Aligned_cols=19 Identities=21% Similarity=0.110 Sum_probs=0.0
Q ss_pred CCCcEEeCcCCcccc--ccCC
Q 037422 81 QELHVLDLWNNRFEG--WEEN 99 (100)
Q Consensus 81 ~~L~~L~Ls~N~~sG--~iP~ 99 (100)
++|+.|||++|.++| .||.
T Consensus 396 ~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 396 QNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ---------------------
T ss_pred CcCCEEECCCCcCCccccchh
Confidence 556666666666655 5553
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=93.70 E-value=0.092 Score=35.14 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=26.0
Q ss_pred CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
..++.|++.++ .+ .+ +.+..|..+++|++|+|++|.++ .+|
T Consensus 76 ~~L~~L~L~~n-----~l--~~---~~~~~~~~l~~L~~L~Ls~n~l~-~l~ 116 (330)
T 1xku_A 76 KNLHTLILINN-----KI--SK---ISPGAFAPLVKLERLYLSKNQLK-ELP 116 (330)
T ss_dssp TTCCEEECCSS-----CC--CC---BCTTTTTTCTTCCEEECCSSCCS-BCC
T ss_pred CCCCEEECCCC-----cC--Ce---eCHHHhcCCCCCCEEECCCCcCC-ccC
Confidence 35677777765 34 22 32333477888888888888776 454
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.65 E-value=0.09 Score=38.33 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=17.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+|+..|..+++|++|+|++|.+++.+|
T Consensus 138 l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 138 LPRGIFHNTPKLTTLSMSNNNLERIED 164 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred CCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence 444444667777777777777766554
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.64 E-value=0.077 Score=34.77 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=9.7
Q ss_pred CCCCCCcEEeCcCCcccccc
Q 037422 78 VPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~i 97 (100)
..+++|+.|+|++|.+++.+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~ 193 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVH 193 (285)
T ss_dssp TTCTTCCEEECCSSCCCEEC
T ss_pred cCccccCEEECCCCcccccC
Confidence 44455555555555544443
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=93.55 E-value=0.067 Score=40.66 Aligned_cols=28 Identities=14% Similarity=0.089 Sum_probs=22.5
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+.+..|..+++|++|+|++|.+++.+|.
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 115 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLK 115 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCST
T ss_pred cCHhHccCCcccCEeeCcCCCCCccccc
Confidence 3344568999999999999999987764
No 77
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=93.49 E-value=0.073 Score=38.46 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=16.4
Q ss_pred CCCCCCCCCCcEEeCcCCcccccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~i 97 (100)
|..|..+++|++|+|++|.+++..
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSS
T ss_pred hhhcCCcccCCEEEccCCcccccc
Confidence 333577778888888887776543
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=93.39 E-value=0.038 Score=39.23 Aligned_cols=17 Identities=41% Similarity=0.358 Sum_probs=8.3
Q ss_pred CCCCCCcEEeCcCCccc
Q 037422 78 VPFQELHVLDLWNNRFE 94 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~s 94 (100)
..+++|++|||++|.++
T Consensus 66 ~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 66 KFNQELEYLDLSHNKLV 82 (520)
T ss_dssp TTCTTCCEEECCSSCCC
T ss_pred hcccCCCEEecCCCcee
Confidence 44444555555544444
No 79
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=93.38 E-value=0.0028 Score=45.12 Aligned_cols=27 Identities=4% Similarity=-0.165 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
||.++ +.|++|++|++++|.++|.+|.
T Consensus 26 iP~~i-~~L~~L~~L~l~~n~~~~~~p~ 52 (454)
T 1jl5_A 26 MPVEA-ENVKSKTEYYNAWSEWERNAPP 52 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCT
T ss_pred CChhH-hcccchhhhhccCCcccccCCc
Confidence 54443 6666666666666666666654
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=93.33 E-value=0.083 Score=36.09 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=10.6
Q ss_pred CCCCCCCcEEeCcCCcccc
Q 037422 77 FVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG 95 (100)
|..+++|++|+|++|.|++
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp TTTCTTCCEEECCSSCCCE
T ss_pred ccCCCCCCEEECCCCcCCc
Confidence 3555555555555555544
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=93.27 E-value=0.12 Score=34.34 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=9.2
Q ss_pred CCCCCCCcEEeCcCCccc
Q 037422 77 FVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~s 94 (100)
|..+++|+.|+|++|+++
T Consensus 144 ~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp TTTCTTCCEEECTTSCCS
T ss_pred cccccCCCEEECCCCcCC
Confidence 344555555555555554
No 82
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=93.17 E-value=0.096 Score=35.77 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=9.3
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.|++
T Consensus 133 ~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp TTCTTCCEEECCSSCCCS
T ss_pred CCcccCCEEECCCCcCCe
Confidence 455555555555555443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=93.16 E-value=0.041 Score=36.73 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=8.6
Q ss_pred CCCCcEEeCcCCccccc
Q 037422 80 FQELHVLDLWNNRFEGW 96 (100)
Q Consensus 80 l~~L~~L~Ls~N~~sG~ 96 (100)
+++|++|+|++|.+++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp CSCCCEEEEECCSSCCC
T ss_pred ccCCCEEEeeCCCcchh
Confidence 44555555555555443
No 84
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=93.13 E-value=0.13 Score=35.25 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=10.9
Q ss_pred CCCCCCCcEEeCcCCccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~ 96 (100)
|..+++|++|+|++|.+++.
T Consensus 137 ~~~l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 137 FHNTPKLTTLSMSNNNLERI 156 (390)
T ss_dssp TTTCTTCCEEECCSSCCCBC
T ss_pred hcCCCCCcEEECCCCccCcc
Confidence 35555555555555555543
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=93.11 E-value=0.15 Score=32.46 Aligned_cols=27 Identities=15% Similarity=0.141 Sum_probs=21.3
Q ss_pred cCCCCCCCC-CCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPF-QELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l-~~L~~L~Ls~N~~sG~iP~ 99 (100)
+++..|..+ ++|+.|+|++|.+++ ||.
T Consensus 195 i~~~~~~~l~~~L~~L~l~~N~l~~-l~~ 222 (239)
T 2xwt_C 195 IDKDAFGGVYSGPSLLDVSQTSVTA-LPS 222 (239)
T ss_dssp ECTTTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred CCHHHhhccccCCcEEECCCCcccc-CCh
Confidence 556656888 999999999999984 553
No 86
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=93.11 E-value=0.092 Score=34.40 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=12.2
Q ss_pred CCCCCCCCcEEeCcCCc
Q 037422 76 LFVPFQELHVLDLWNNR 92 (100)
Q Consensus 76 ~~~~l~~L~~L~Ls~N~ 92 (100)
.|..+++|++|+|++|.
T Consensus 75 ~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TTTTCTTCCEEECCSCT
T ss_pred hcCCccCCCEEeCCCCC
Confidence 34677777777777776
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=93.00 E-value=0.044 Score=33.16 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=27.5
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
.++.|++.++ .+ .+ + .. +..+++|++|+|++|.+++.+|
T Consensus 50 ~L~~L~l~~n-----~l--~~---~-~~-~~~l~~L~~L~Ls~N~l~~~~~ 88 (168)
T 2ell_A 50 NLEFLSLINV-----GL--IS---V-SN-LPKLPKLKKLELSENRIFGGLD 88 (168)
T ss_dssp GCCEEEEESS-----CC--CC---C-SS-CCCCSSCCEEEEESCCCCSCCC
T ss_pred CCCEEeCcCC-----CC--CC---h-hh-hccCCCCCEEECcCCcCchHHH
Confidence 4566666664 34 22 3 33 4889999999999999998765
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=92.98 E-value=0.11 Score=37.45 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=16.2
Q ss_pred CCCCCCCCCCcEEeCcCCccccccCC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+..|..+++|++|||++|.++ .||.
T Consensus 93 ~~~~~~l~~L~~L~Ls~N~l~-~lp~ 117 (562)
T 3a79_B 93 FHVFLFNQDLEYLDVSHNRLQ-NISC 117 (562)
T ss_dssp TTTTTTCTTCCEEECTTSCCC-EECS
T ss_pred HHHhCCCCCCCEEECCCCcCC-ccCc
Confidence 333467777777777777776 4554
No 89
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.93 E-value=0.13 Score=37.49 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=16.7
Q ss_pred cCCCCCCCCCCCcEEeCcCCcccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+++..|+.+++|++|+|++|.+++
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~ 137 (597)
T 3oja_B 114 LPPHVFQNVPLLTVLVLERNDLSS 137 (597)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCHHHHcCCCCCCEEEeeCCCCCC
Confidence 344445777888888888887774
No 90
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=92.89 E-value=0.14 Score=36.02 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=15.3
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++..|..+++|++|+|++|.+++.+|
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred cCcccccCCCCCCEEECCCCccccCCh
Confidence 334334566666666666666655443
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=92.79 E-value=0.11 Score=31.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=15.5
Q ss_pred CCCCCCCcEEeCcCCcccccc
Q 037422 77 FVPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~i 97 (100)
+..+++|+.|+|++|.+++..
T Consensus 116 l~~l~~L~~L~l~~N~l~~~~ 136 (168)
T 2ell_A 116 LKKLECLKSLDLFNCEVTNLN 136 (168)
T ss_dssp GSSCSCCCEEECCSSGGGTST
T ss_pred HhcCCCCCEEEeeCCcCcchH
Confidence 467788888888888877643
No 92
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.77 E-value=0.1 Score=31.00 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=27.4
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
.++.|+|+++ .| + . |++..|..+++|+.|+|++|-|.
T Consensus 32 ~l~~L~Ls~N-----~l--~-~--l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGN-----NL--T-A--LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTS-----CC--S-S--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCC-----cC--C-c--cChhhhhhccccCEEEecCCCee
Confidence 4667777775 44 1 2 66666788999999999999763
No 93
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=92.75 E-value=0.094 Score=37.88 Aligned_cols=25 Identities=24% Similarity=0.101 Sum_probs=17.6
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..|..+++|++|+|++|.+++.+|
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECT
T ss_pred hhhccCccccCeeeCCCCcccccCh
Confidence 3335777788888888887776655
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=92.74 E-value=0.19 Score=32.02 Aligned_cols=18 Identities=11% Similarity=0.388 Sum_probs=9.9
Q ss_pred CCCCCCCcEEeCcC-Cccc
Q 037422 77 FVPFQELHVLDLWN-NRFE 94 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~-N~~s 94 (100)
|..+++|++|+|++ |.++
T Consensus 76 f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp EESCTTCCEEEEEEETTCC
T ss_pred cCCCcCCcEEECCCCCCee
Confidence 35555555555555 5554
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=92.71 E-value=0.083 Score=35.44 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=22.1
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+++.|++.++ .+ .+ +.+..|..+++|++|+|++|.++ .||
T Consensus 79 ~L~~L~L~~n-----~l--~~---~~~~~~~~l~~L~~L~L~~n~l~-~l~ 118 (332)
T 2ft3_A 79 HLYALVLVNN-----KI--SK---IHEKAFSPLRKLQKLYISKNHLV-EIP 118 (332)
T ss_dssp TCCEEECCSS-----CC--CE---ECGGGSTTCTTCCEEECCSSCCC-SCC
T ss_pred CCcEEECCCC-----cc--Cc---cCHhHhhCcCCCCEEECCCCcCC-ccC
Confidence 4566666654 23 21 22333466677777777777665 444
No 96
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=92.71 E-value=0.11 Score=33.77 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=8.4
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|++++|.+++
T Consensus 97 ~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred cCCccccEEECCCCCccc
Confidence 444444444444444443
No 97
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=92.68 E-value=0.091 Score=37.96 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=17.8
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..|..+++|+.|+|++|.+++.+|
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred hhhhccccCCCEEECCCCccCcCCh
Confidence 3345777788888888887777665
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=92.64 E-value=0.11 Score=36.53 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=13.4
Q ss_pred CCCCCCCCcEEeCcCCcccc
Q 037422 76 LFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 76 ~~~~l~~L~~L~Ls~N~~sG 95 (100)
.|..+++|++|+|++|.+++
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCS
T ss_pred hhhCCccCCEEECCCCcCCc
Confidence 34667777777777776654
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=92.47 E-value=0.071 Score=38.01 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=15.6
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+..+++|+.|+|++|.|++.+|
T Consensus 490 ~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 490 DGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred HHHHhcCcccCEEEecCCCccCCCc
Confidence 3334666677777777777666554
No 100
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=92.37 E-value=0.035 Score=37.19 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=13.2
Q ss_pred CCCCCCCcEEeCcCCcccc
Q 037422 77 FVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG 95 (100)
+..+++|++|+|++|.+++
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp ETTCTTCCEEECCSSEEEE
T ss_pred hhhcCCCCEEECcCCcccc
Confidence 3667777777777777665
No 101
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=92.35 E-value=0.16 Score=37.29 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=12.8
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
|..+++|++|+|++|.+++.+|
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~ 138 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKL 138 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCC
T ss_pred ccccCCCCEEECCCCcccccCc
Confidence 4556666666666666655443
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=92.27 E-value=0.13 Score=37.75 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=17.9
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+|+..|..+++|+.|+|++|.+++..|
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 445545677777777777777776543
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=92.25 E-value=0.2 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=12.1
Q ss_pred CCCCCCCcEEeCcCCcccc
Q 037422 77 FVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG 95 (100)
|..+++|++|+|++|.+++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp TTTCTTCCEEECCSSCCCC
T ss_pred hCcCcCCCEEECCCCcCCc
Confidence 4566666666666666654
No 104
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=92.23 E-value=0.21 Score=34.19 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=14.1
Q ss_pred CCCCCCCCCCcEEeCcCCcccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
+..+..+++|+.|+|++|.+++
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSB
T ss_pred hhhccCCCCCCEEECCCCcCCc
Confidence 3334667777777777777654
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=91.83 E-value=0.074 Score=39.50 Aligned_cols=26 Identities=12% Similarity=0.122 Sum_probs=20.6
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
||.. +..+++|+.|+|++|.|+|.+|
T Consensus 276 lp~~-l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 276 LPES-LIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCGG-GGGSCTTCEEECCSCCCCHHHH
T ss_pred CCHH-HhhccccCEEEecCCCCCCcCH
Confidence 5444 4788999999999999888765
No 106
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=91.65 E-value=0.15 Score=36.36 Aligned_cols=25 Identities=20% Similarity=0.386 Sum_probs=18.5
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+..+++|++|+|++|.+++.+|
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCH
Confidence 3334788888888888888887655
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=91.62 E-value=0.095 Score=38.60 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.2
Q ss_pred cCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 72 INMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
||..+ ..+++|+.|+|++|.|+|.+|.
T Consensus 222 lp~~l-~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 222 IPENI-LSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCGGG-GGSCTTEEEECCSSSCCHHHHH
T ss_pred cCHHH-hcCCCCCEEEeeCCcCCCcCHH
Confidence 65554 6699999999999999998773
No 108
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=91.01 E-value=0.24 Score=34.68 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=10.7
Q ss_pred CCCCCCCcEEeCcCCccc
Q 037422 77 FVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~s 94 (100)
|..+++|++|+|++|.++
T Consensus 143 ~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp SSSCTTCCEEECCSCCCC
T ss_pred hcccCCCCEEECCCCCcc
Confidence 455666666666666655
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=90.92 E-value=0.2 Score=30.47 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCcEEeCcCCcc
Q 037422 72 INMSLFVPFQELHVLDLWNNRF 93 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~ 93 (100)
+++..+..+++|++|+|++|.+
T Consensus 79 ~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 79 IGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp ECSCHHHHCTTCCEEECCSCCC
T ss_pred cCcchhhcCCCCCEEECCCCcC
Confidence 4344335667777777777766
No 110
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=90.87 E-value=0.25 Score=33.00 Aligned_cols=18 Identities=22% Similarity=0.111 Sum_probs=8.8
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|+|++|.+++
T Consensus 141 ~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp GGGSSEEEEECTTSCCCE
T ss_pred hccCCCCEEECCCCCCCc
Confidence 444455555555554444
No 111
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=90.57 E-value=0.26 Score=34.37 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=15.9
Q ss_pred CCCCCCCCCCcEEeCcCCccccc
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~ 96 (100)
+..|..+++|+.|+|++|++++.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCC
T ss_pred hhhhcCCCCCCEEECCCCCCCcc
Confidence 33456777788888888877753
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=90.48 E-value=0.29 Score=31.94 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=21.1
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCcccc
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG 95 (100)
.++.|+++++ .+ .+ +++ +..+++|++|+|++|.+++
T Consensus 64 ~L~~L~L~~N-----~i--~~---~~~--l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 64 NLKELHLSHN-----QI--SD---LSP--LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp TCCEEECCSS-----CC--CC---CGG--GTTCSSCCEEECCSSCCSC
T ss_pred CCCEEECCCC-----cc--CC---Chh--hccCCCCCEEECCCCccCC
Confidence 4566666664 33 22 323 3667777777777776665
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=90.45 E-value=0.19 Score=31.22 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=19.7
Q ss_pred CCCCCCCcEEeCcCCccccccCC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+..+++|++|+|++|.+++..|.
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCCCCEEEeECCccCcccCh
Confidence 48899999999999999986553
No 114
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=90.02 E-value=0.017 Score=36.10 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=25.8
Q ss_pred cEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccC
Q 037422 48 WVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 48 ~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
.++.++++++ .+ .+ +| . +..+++|++|+|++|.++ .||
T Consensus 49 ~L~~L~ls~n-----~l--~~---l~-~-~~~l~~L~~L~l~~n~l~-~l~ 86 (198)
T 1ds9_A 49 ACKHLALSTN-----NI--EK---IS-S-LSGMENLRILSLGRNLIK-KIE 86 (198)
T ss_dssp TCSEEECSEE-----EE--SC---CC-C-HHHHTTCCEEEEEEEEEC-SCS
T ss_pred CCCEEECCCC-----CC--cc---cc-c-cccCCCCCEEECCCCCcc-ccc
Confidence 5667777764 34 22 43 3 477888888999888887 555
No 115
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=88.99 E-value=0.36 Score=33.66 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=16.8
Q ss_pred CCCCCCCCCCcEEeCcCCccccccC
Q 037422 74 MSLFVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 74 ~~~~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..|..+++|+.|+|++|.+++..|
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECT
T ss_pred hhhhccCccCCEEECCCCceeEECh
Confidence 3445777777777777777766544
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=88.22 E-value=0.42 Score=33.60 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=11.4
Q ss_pred CCCCCCcEEeCcCCccccccC
Q 037422 78 VPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~iP 98 (100)
..+++|+.|++++|.+++.+|
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG
T ss_pred ccCCCCCEEeCCCCccCccch
Confidence 455555555555555555443
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=88.07 E-value=0.12 Score=34.67 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=14.6
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+++|++|+|++|.+++..|
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG
T ss_pred hhccccCCEEEccCCccccccC
Confidence 3566777777777777766544
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=87.47 E-value=0.46 Score=30.97 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=8.9
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.+++
T Consensus 125 ~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp TTCTTCCEEECTTSCCCB
T ss_pred cCcccccEEECCCCcCCC
Confidence 445555555555555443
No 119
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=86.23 E-value=0.51 Score=31.48 Aligned_cols=43 Identities=16% Similarity=-0.052 Sum_probs=27.3
Q ss_pred CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccccccCC
Q 037422 47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
..+..|+|+++ .+ .+...+ .. +..+ .|+.|+|++|.+.+.+|.
T Consensus 196 ~~L~~L~Ls~N-----~i--~~~~~l-~~-l~~l-~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 196 PNLKILNLSGN-----EL--KSEREL-DK-IKGL-KLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp TTCCEEECTTS-----CC--CSGGGG-GG-GTTS-CCSEEECTTSTTGGGCSS
T ss_pred CCCCEEECCCC-----cc--CCchhh-hh-cccC-CcceEEccCCcCccccCc
Confidence 35778888876 34 221002 11 1334 899999999999988773
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=85.99 E-value=0.65 Score=32.87 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=14.6
Q ss_pred CCCCCCCcEEeCcCCcccc
Q 037422 77 FVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG 95 (100)
++.+++|++|+|++|.|++
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTN 99 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC
T ss_pred cccCCCCCEEECcCCCCce
Confidence 3777888888888887776
No 121
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=85.14 E-value=0.6 Score=34.50 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=8.5
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..|++|+.|+|++|.|++
T Consensus 172 ~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp TTCTTCCEEECCSSCCCB
T ss_pred ccCCCCCEEECcCCCCCC
Confidence 444444444444444443
No 122
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=84.56 E-value=0.71 Score=30.49 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=9.4
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.+++
T Consensus 175 ~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTCTTCCEEECCSSCCCB
T ss_pred cCCCccCEEECCCCcCCC
Confidence 455555555555555443
No 123
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=84.51 E-value=0.94 Score=29.91 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=11.6
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|+|++|.+++
T Consensus 109 ~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred ccCCCCCEEECCCCcCCC
Confidence 566666666666666654
No 124
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=83.96 E-value=0.85 Score=33.68 Aligned_cols=19 Identities=21% Similarity=0.358 Sum_probs=12.9
Q ss_pred CCCCCCcEEeCcCCccccc
Q 037422 78 VPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~ 96 (100)
..|++|+.|+|++|.+++.
T Consensus 194 ~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 194 AGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCTTCSEEECCSEEEECC
T ss_pred ccCCCCCEEEccCCcCcCC
Confidence 6667777777777766653
No 125
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=83.67 E-value=1.1 Score=29.83 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=12.0
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.+++
T Consensus 104 ~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred cCCCCCCEEECCCCCCCC
Confidence 566667777777776654
No 126
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=83.28 E-value=0.89 Score=30.23 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=9.9
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.+++
T Consensus 192 ~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp GGCTTCCEEECTTSCCCB
T ss_pred cCCCCCCEEEccCCccCc
Confidence 455555555555555554
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=81.95 E-value=0.11 Score=35.55 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=12.0
Q ss_pred CCCCCCcEEeCcCCcccccc
Q 037422 78 VPFQELHVLDLWNNRFEGWE 97 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~i 97 (100)
.++++|++|+|++|.|++..
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTS
T ss_pred hcCCCceEEEccCCcCCcch
Confidence 34566666666666666543
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=81.47 E-value=1.4 Score=30.94 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=11.8
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|+|++|.+++
T Consensus 109 ~~l~~L~~L~L~~n~l~~ 126 (466)
T 1o6v_A 109 ANLTNLTGLTLFNNQITD 126 (466)
T ss_dssp TTCTTCCEEECCSSCCCC
T ss_pred cCCCCCCEEECCCCCCCC
Confidence 566666666666666654
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=80.69 E-value=0.3 Score=30.32 Aligned_cols=23 Identities=17% Similarity=0.084 Sum_probs=18.7
Q ss_pred CCCCCCCcEEeCcCCccccccCC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEEN 99 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP~ 99 (100)
+..+++|++|++++|.+++.+|.
T Consensus 136 l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HTTTTTCSEEEECSCHHHHHHHT
T ss_pred HhcCCCCCEEEecCCcccccccc
Confidence 47888999999999998887653
No 130
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=78.92 E-value=1.2 Score=31.50 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=9.0
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|+|++|++++
T Consensus 209 ~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TTCTTCSEEECCSSCCSC
T ss_pred ccCCCCCEEECcCCcccc
Confidence 444455555555555544
No 131
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=78.90 E-value=1.3 Score=29.42 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.4
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+++|+.|+|++|.+++..|
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp GGGCTTCSEEECCSSCCCGGGH
T ss_pred hcCCCCCCEEECcCCcCCCcCh
Confidence 3677888888888888776543
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=78.37 E-value=0.97 Score=29.94 Aligned_cols=18 Identities=22% Similarity=0.145 Sum_probs=10.0
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|+.|+|++|.+++
T Consensus 90 ~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp CCCBCCCEEECTTCEECH
T ss_pred ccCCCCCEEEccCCCcCH
Confidence 345555555555555544
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=72.88 E-value=0.8 Score=31.07 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=14.3
Q ss_pred CCCcEEeCcCCccccccC
Q 037422 81 QELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 81 ~~L~~L~Ls~N~~sG~iP 98 (100)
++|++|+|++|.+++..+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TTCCEEECCSSCGGGSCH
T ss_pred CCccEEECcCCcCChHHH
Confidence 888888888888876543
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=72.64 E-value=3.6 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=12.2
Q ss_pred CCCCCcEEeCcCCccccccC
Q 037422 79 PFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~sG~iP 98 (100)
.+++|+.|+|++|.|+ .||
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp 277 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLP 277 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCC
T ss_pred ccccCcEEeCCCCCCC-cCC
Confidence 3456677777777766 555
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=67.99 E-value=0.62 Score=32.29 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=13.7
Q ss_pred CCCCCCcEEeCcCCccccc
Q 037422 78 VPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~ 96 (100)
..+++|++|+|++|.+++.
T Consensus 395 ~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 395 LANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHCCCCCEEECCSSSCCHH
T ss_pred HhCCCccEEECCCCCCCHH
Confidence 5577788888888877653
No 136
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=66.27 E-value=1.6 Score=28.89 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=17.3
Q ss_pred CCCCCCCcEEeCcCCccccccC
Q 037422 77 FVPFQELHVLDLWNNRFEGWEE 98 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG~iP 98 (100)
+..+++|+.|+|++|.+++.+|
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHH
Confidence 4678889999999888876554
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=64.07 E-value=3.7 Score=27.83 Aligned_cols=10 Identities=40% Similarity=0.338 Sum_probs=6.3
Q ss_pred cEEEEEcCcC
Q 037422 48 WVMELSLSDA 57 (100)
Q Consensus 48 ~v~~l~l~~~ 57 (100)
.++.|++.++
T Consensus 33 ~L~~L~L~~n 42 (386)
T 2ca6_A 33 SVKEIVLSGN 42 (386)
T ss_dssp CCCEEECTTS
T ss_pred CccEEECCCC
Confidence 4666777664
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=53.89 E-value=5.5 Score=26.86 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=13.8
Q ss_pred CCCCCCcEEeCcCCccccc
Q 037422 78 VPFQELHVLDLWNNRFEGW 96 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG~ 96 (100)
..+++|+.|||++|.+...
T Consensus 281 ~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 281 PNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEEEECTTSCBCCGG
T ss_pred ccCCceEEEecCCCcCCCc
Confidence 5677777778887777655
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=52.47 E-value=1.9 Score=30.78 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=7.3
Q ss_pred CCCCCcEEeCcCCccc
Q 037422 79 PFQELHVLDLWNNRFE 94 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~s 94 (100)
.+++|++|+|++|.|+
T Consensus 486 ~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFS 501 (592)
T ss_dssp CCTTCCEEEEESCCCB
T ss_pred cCcccCeeeccCCCCc
Confidence 3444444444444443
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=49.42 E-value=13 Score=24.57 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.7
Q ss_pred cCCCCCCCCCCCcEEeCcCCccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
|+..-|..|++|+.|+|+.|.+.
T Consensus 115 I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 115 IEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp ECTTTTTTCTTCCEEEBCCSSCC
T ss_pred hhHHHhhcCcccceEEcCCCCcc
Confidence 44444688999999999998754
No 141
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=47.09 E-value=9.7 Score=26.15 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.7
Q ss_pred CCCCCCCcEEeCcCCcccc
Q 037422 77 FVPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 77 ~~~l~~L~~L~Ls~N~~sG 95 (100)
+..+++|+.|+|++|.+++
T Consensus 109 l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTSCTTCCEEECCSSBCHH
T ss_pred HccCCceeEEECCCCcCch
Confidence 4788899999999988765
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=46.89 E-value=8.9 Score=23.42 Aligned_cols=43 Identities=9% Similarity=-0.000 Sum_probs=22.7
Q ss_pred CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCccc
Q 037422 47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
..++.|+|.++ ..++..|...+... +...+.|++|+|++|.+.
T Consensus 36 ~~L~~L~L~~n----~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 36 PDLEEVNLNNI----MNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCCEEECTTC----TTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCC
T ss_pred CCCCEEEecCC----CCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCC
Confidence 46788888863 02210010001111 245677888888888764
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=44.16 E-value=16 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=22.2
Q ss_pred CcEEEEEcCcCCcCCCCCCCCCCcccCCCCCCCCCCCcEEeCcCCc
Q 037422 47 GWVMELSLSDAIRVNSNDVSDGFPIINMSLFVPFQELHVLDLWNNR 92 (100)
Q Consensus 47 ~~v~~l~l~~~~~~~~~l~~~g~~~i~~~~~~~l~~L~~L~Ls~N~ 92 (100)
-++++|++++. .+...| + .. +..+++|+.|+|+++.
T Consensus 61 ~~L~~LDLs~~-----~Itd~G---L-~~-L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDS-----CIMSIG---F-DH-MEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESC-----CCCGGG---G-GG-GTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCC-----CccHHH---H-HH-hcCCCCCCEEEeCCCC
Confidence 46889998875 231112 2 22 3677888888888763
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=36.04 E-value=16 Score=25.07 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=8.9
Q ss_pred CCCCCcEEeCcCCccc
Q 037422 79 PFQELHVLDLWNNRFE 94 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~s 94 (100)
..+.|+.|+|++|.++
T Consensus 209 ~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 209 RNRQLQELNVAYNGAG 224 (372)
T ss_dssp GCSCCCEEECCSSCCC
T ss_pred cCCCcCeEECCCCCCC
Confidence 3445666666666554
No 145
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=31.99 E-value=15 Score=14.71 Aligned_cols=10 Identities=30% Similarity=1.079 Sum_probs=6.6
Q ss_pred CCCceeeeEE
Q 037422 32 SDCCSWERIK 41 (100)
Q Consensus 32 ~~~C~w~gi~ 41 (100)
...|.|.|+.
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3468888764
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=30.66 E-value=17 Score=25.01 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=10.6
Q ss_pred CCCCcEEeCcCCcccc
Q 037422 80 FQELHVLDLWNNRFEG 95 (100)
Q Consensus 80 l~~L~~L~Ls~N~~sG 95 (100)
++.|+.|||+.|.+++
T Consensus 278 ~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 278 LPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGCSEEECCSSCCBH
T ss_pred CCCCCEEECCCCCCCh
Confidence 5567777777776654
No 147
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=29.01 E-value=25 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=12.5
Q ss_pred CCCCCcEEeCcCCcccc
Q 037422 79 PFQELHVLDLWNNRFEG 95 (100)
Q Consensus 79 ~l~~L~~L~Ls~N~~sG 95 (100)
.=+.|+.|+|+.|.+..
T Consensus 96 ~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HCSSCCEEECCSSBCCH
T ss_pred cCCccCeEecCCCcCCH
Confidence 34568888888888754
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=26.93 E-value=62 Score=22.31 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=16.1
Q ss_pred cCCCCCCCCCCCcEEeCcCCccc
Q 037422 72 INMSLFVPFQELHVLDLWNNRFE 94 (100)
Q Consensus 72 i~~~~~~~l~~L~~L~Ls~N~~s 94 (100)
|...-|..|++|+.++|+.|.++
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~ 193 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKIT 193 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCS
T ss_pred ehHHHhhCcccCCeeecCCCcce
Confidence 33344578888999999877543
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=24.20 E-value=35 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.1
Q ss_pred CCCCCCcEEeCcCCcccc
Q 037422 78 VPFQELHVLDLWNNRFEG 95 (100)
Q Consensus 78 ~~l~~L~~L~Ls~N~~sG 95 (100)
..+++|++|+|++|.+++
T Consensus 153 ~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 153 ATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HHCTTCCEEECTTCEEEC
T ss_pred HhCCCCCEEeCcCCccCC
Confidence 367888888888888665
Done!