BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037423
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/346 (28%), Positives = 174/346 (50%), Gaps = 22/346 (6%)
Query: 76 FQKLPMVMPSVDILSSALKKA-KRVSATKGISNIAKRERNKAAKQLDALMKELAVPLRDY 134
F++ P V+ + +++ A ++A K S+ K N K+ R + ++ + + LR
Sbjct: 5 FERXPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKV 64
Query: 135 VANFPNRKCLHPYERSLTELTLGDGNYEKVLKNVDALRKKVVSAGKEHASLCAKSLSKRE 194
+ P L + + L ++ + + K +D + + + + S E
Sbjct: 65 LERTPGLSTLPKFYQELVDVLVDRDTFHKAXAGIDWAIRIIRELEERYVERIRYSNDPNE 124
Query: 195 AEERLSEGLQRLEEVFNREGKAVDD---LLNIAK-TLRAMPVVDLETPTLCLVGAPNVGK 250
E + R+ V + +DD LN A+ L+ +PVVDLE PT+ + G PNVGK
Sbjct: 125 IAELRRQFYGRVASVL----RDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGK 180
Query: 251 SSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTL 310
S+L++ ++T KPE+ +YPFTTRGI +G GY +QI DTPGLL R +RN +EK +
Sbjct: 181 STLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI 240
Query: 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAY 370
L +L I+++ D S CG +Q +++E+ F D +L V++K D
Sbjct: 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKID--------- 291
Query: 371 VTEDEDSEHLE-MASYRKMGPDGAIRVSVMNEEGLNELKDRVYQML 415
V ++E+ + LE + + P I++S + G++ +K+ + + L
Sbjct: 292 VADEENIKRLEKFVKEKGLNP---IKISALKGTGIDLVKEEIIKTL 334
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 82/139 (58%), Gaps = 3/139 (2%)
Query: 227 LRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNF 286
+ +P ++ T+ L GAPNVGKSS + ++S +V +Y FTT+ + +GH + +
Sbjct: 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKY 78
Query: 287 QITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKE 346
QI DTPGLL R E+RN +E T+ L H+ ILF+ D+S +CG + +Q ++ IK
Sbjct: 79 QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS 138
Query: 347 RFSDH---IWLDVVSKCDL 362
FS+ I + + KC++
Sbjct: 139 VFSNKSIVIGFNKIDKCNM 157
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 108/215 (50%), Gaps = 37/215 (17%)
Query: 203 LQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLV-RVISTGK 261
L+R++E E K D + + + LR + +VG PNVGKS+L+ R+++ +
Sbjct: 220 LERIKEKLTEELKKADAGILLNRGLR-----------MVIVGKPNVGKSTLLNRLLNEDR 268
Query: 262 PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA-VLTHLPTA- 319
V + P TTR ++ I + F+I DT G+ R E + +E+L + L + A
Sbjct: 269 AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV---RSETNDLVERLGIERTLQEIEKAD 325
Query: 320 -ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSE 378
+LFV D S SP D+ ++I ER + +L V++K D+ V + E+E
Sbjct: 326 IVLFVLDAS-----SPLDEED--RKILERIKNKRYLVVINKVDV-----VEKINEEEIKN 373
Query: 379 HLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQ 413
L + R M +++S + EGL +L++ +Y+
Sbjct: 374 KL--GTDRHM-----VKISALKGEGLEKLEESIYR 401
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRR 298
+ LVG P+VGKS+L+ V+S+ KP++ +Y FTT +G + ++F D PGL+
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLI--- 217
Query: 299 DEDRNNLEKLTLAVLTHLPTAILFVH--DLSGECGTSPSDQF-TIYKEIKE---RFSDHI 352
E + L L H+ + VH D SG G P D + TI +E+ E R ++
Sbjct: 218 -EGAHQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERP 276
Query: 353 WLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNEL 407
+ V +K D E +E+LE + +S + EGL EL
Sbjct: 277 QIIVANKXD-----------XPEAAENLEAFKEKLTDDYPVFPISAVTREGLREL 320
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN-FQITDTPGLLQRR 298
+ LVG PN GKSSL+ ++ P++ YPFTT +G + + + F + D PG+++
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219
Query: 299 DEDRNNLEKLTLAVLTHLP--TAILFVHDLSGE 329
E + L L L H+ +L+V D + E
Sbjct: 220 SEGKG----LGLEFLRHIARTRVLLYVLDAADE 248
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 240 LCLVGAPNVGKSSLVRVIS-TGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ +VG PNVGKSSL+ S + + V + P TTR ++ + +G Q+ DT G+ +
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS 286
Query: 299 DE-DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVV 357
D+ ++ +E+ A TA L + + G + DQ IY+++K R + V+
Sbjct: 287 DQVEKIGVERSRQAA----NTADLVLLTIDAATGWTTGDQ-EIYEQVKHRP----LILVM 337
Query: 358 SKCDLLQTSPVAYVTEDED-SEHLEMASYRKMGPD 391
+K DL++ + + E+ ++ + A+ +K G D
Sbjct: 338 NKIDLVEKQLITSLEYPENITQIVHTAAAQKQGID 372
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 214 GKAVDDLLN-IAKTLRAMPVVDL--ETPTLCLVGAPNVGKSSLVR-VISTGKPEVCNYPF 269
G + DLL+ +A+ + +P E CL+G PNVGKSSLV ++ + V N
Sbjct: 169 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG 228
Query: 270 TTRGILMGHINLGYQNFQITDTPGLLQR 297
TTR + Q F I DT G+ ++
Sbjct: 229 TTRDAVDTSFTYNQQEFVIVDTAGMRKK 256
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 238 PTLCLVGAPNVGKSSLVRVISTGKPEVC-NYPFTTRGILMGHINLGYQNFQITDTPGL 294
P + +VG PNVGKS++ I+ + + + P TR + +F + DT G+
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 214 GKAVDDLLN-IAKTLRAMPVVDL--ETPTLCLVGAPNVGKSSLVRV-ISTGKPEVCNYPF 269
G + DLL+ +A+ + +P E CL+G PNVGKSSLV + + V N
Sbjct: 149 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAG 208
Query: 270 TTRGILMGHINLGYQNFQITDTPG 293
TTR + Q F I DT G
Sbjct: 209 TTRDAVDTSFTYNQQEFVIVDTAG 232
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 238 PTLCLVGAPNVGKSSLVRVISTGKPEVC-NYPFTTRGILMGHINLGYQNFQITDTPGL 294
P + +VG PNVGKS++ I+ + + + P TR + +F + DT G+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPE-VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ + G PN GKSSL+ ++ + V + TTR +L HI++ I DT GL +
Sbjct: 10 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 69
Query: 299 DE-DRNNLEK 307
DE +R +E+
Sbjct: 70 DEVERIGIER 79
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 240 LCLVGAPNVGKSSLVR-VISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ +VG PNVGKS+L+ ++ + P TTR L G + G + DTPGL +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 299 DEDRNNLEKLTLAVLTHLPTAILFVHDL 326
D +++ L + A+++V DL
Sbjct: 70 DALGEFMDQEVYEALADV-NAVVWVVDL 96
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 242 LVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
L+G PN GK++L ++ V N+P T G LG +ITD PG+
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPE-VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ + G PN GKSSL+ ++ + V + TTR +L HI++ I DT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS 66
Query: 299 DE-DRNNLEK 307
DE +R +E+
Sbjct: 67 DEVERIGIER 76
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPE-VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ + G PN GKSSL+ ++ + V + TTR +L HI++ I DT GL +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66
Query: 299 DE-DRNNLEK 307
DE +R +E+
Sbjct: 67 DEVERIGIER 76
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTP 292
+ +VG PNVGKS+ + E+ NYPFTT N+G + ITD P
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTI-----EANVGV-TYAITDHP 49
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
++ VG P+VGKS+L+ ++ + E Y FTT + G I Q+ D PG++
Sbjct: 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGA 133
Query: 299 DEDRN 303
+ R
Sbjct: 134 KDGRG 138
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
T+ LVG PNVGK+++ ++ + V N+P T G + + F + D PG+
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PNVGKS++ ++ + N+P T G + F++ D PG+
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PNVGKS++ ++ + N+P T G + F++ D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PNVGKS++ ++ + N+P T G + F++ D PG+
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PNVGKS++ ++ + N+P T G + F++ D PG+
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 242 LVGAPNVGKSSLVRVISTGKPEVCNYPFTT 271
+VG PNVGKS+L ++ E NYPF T
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEAANYPFCT 36
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 240 LCLVGAPNVGKSSLV-RVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ +VG PNVGKSSL R++ V + P TR + G + F + DT GL
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 299 DEDRNNLEKLTLAV 312
++ EK+ A+
Sbjct: 64 KWEKKIQEKVDRAL 77
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTT 271
+ +VG PNVGKS+L ++ NYPF T
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFAT 35
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTT 271
+ +VG PNVGKS+L ++ NYPF T
Sbjct: 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFAT 35
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 74/183 (40%), Gaps = 28/183 (15%)
Query: 240 LCLVGAPNVGKSSLVR-VISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298
+ +VG PNVGKS+L +++ + V P TTR + + + + + DT GL ++
Sbjct: 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242
Query: 299 DEDRNNLEKLT-LAVLTHLPTAILFVHDLSGECGTSPSDQ----------------FTIY 341
+ +EK + V+ + A + V L G + DQ F +
Sbjct: 243 RVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRXAGLXERRGRASVVVFNKW 302
Query: 342 KEI--KERFSDHIWLDVVSKCDLLQTSPVAYVTEDE--------DSEHLEMASYRKMGPD 391
+ +E+ D K + SP+ + + D+ D+ +L ASY P
Sbjct: 303 DLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRXIDAXNLAYASYTTKVPS 362
Query: 392 GAI 394
AI
Sbjct: 363 SAI 365
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 239 TLCLVGAPNVGKSSLV-RVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQR 297
T+ +VG PNVGKS+L +++ K V + TR + + + F++ DT G+
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62
Query: 298 -RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQ 337
+D +++TL + +LFV D G+ G + D+
Sbjct: 63 PQDIISQKXKEVTLNXIRE-ADLVLFVVD--GKRGITKEDE 100
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 236 ETPTLCLVGAPNVGKSSLVR-VISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
E + + G PN GKS+L+ ++ + V + P TTR + F++TDT GL
Sbjct: 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
Query: 295 LQRRDE-----DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS 349
+ +E R + K+ A L IL++ DL E D+ T +E+K
Sbjct: 292 REAGEEIEHEGIRRSRMKMAEADL------ILYLLDLGTE---RLDDELTEIRELKAAHP 342
Query: 350 DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKD 409
+L V +K D + A + D E+ I +S +N +G++ LK
Sbjct: 343 AAKFLTVANKLDRAANAD-ALIRAIADGTGTEV-----------IGISALNGDGIDTLKQ 390
Query: 410 RVYQMLVGQMDRIKSRS 426
+ LV +D++ S
Sbjct: 391 HMGD-LVKNLDKLHEAS 406
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 241 CLVGAPNVGKSSLV-RVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299
++G PNVGKS+L+ R+ + + P T + +G + ++ DTPG+L +
Sbjct: 124 LIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVG-KELELLDTPGILWPKF 180
Query: 300 EDRNNLEKLTLAVLTHLPTAILFVHDLS 327
ED L L LAV + +I+ + D++
Sbjct: 181 ED--ELVGLRLAVTGAIKDSIINLQDVA 206
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTT 271
+ +VG PNVGKS+ V++ + N+PF T
Sbjct: 25 IGIVGLPNVGKSTFFNVLTNSQASAENFPFCT 56
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPG 293
+ L G PNVGK+SL ++ K V N+P T G + D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPG 293
+ L G PNVGK+SL ++ K V N+P T G + D PG
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYP----------FTTRGILMGHINL 281
+ L G PNVGK+SL ++ K V N+P FT +G + I+L
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 242 LVGAPNVGKSSLVRVIST---GKPEVCNYPFTT 271
+VG PNVGKS+ R I+ G P NYP+ T
Sbjct: 25 IVGXPNVGKSTFFRAITKSVLGNP--ANYPYAT 55
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPF-TTRGILMG-HINLGYQNFQITDTPGL 294
+ +VG PNVGKS+L+ + K + + TTR ++G H YQ + DTPGL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGL 63
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PN GK+SL +I+ V N+P T G + ++ +I D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN-KDLEIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PN GK+SL +I+ V N+P T G + ++ +I D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN-KDLEIQDLPGI 59
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PN GK+SL +I+ V N+P T G + ++ +I D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN-KDLEIQDLPGI 59
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPF-TTRGILMG-HINLGYQNFQITDTPGL 294
+ +VG PNVGKS+L+ + K + + TTR ++G H YQ + DTPGL
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYV-DTPGL 66
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 235 LETPTLCLVGAPNVGKSSLVRVIS 258
L+ P LCL G P VGK+SL + I+
Sbjct: 106 LKGPILCLAGPPGVGKTSLAKSIA 129
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQR 297
+ +VG PN GKS+++ + + V P T+GI + G +I DTPG+L +
Sbjct: 102 VLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGV---KILDTPGILYK 157
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PN GK+SL +I+ V N+P + G + ++ +I D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVKKN-KDLEIQDLPGI 59
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G PN GK+SL +I+ V N+P G + ++ +I D PG+
Sbjct: 6 IALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVKKN-KDLEIQDLPGI 59
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294
+ L+G P GK+SL +I+ V N+P T G + ++ +I D PG+
Sbjct: 6 IALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKKN-KDLEIQDLPGI 59
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNY--PFTTR 272
TL L+GA VG+S + + + PE Y P+TTR
Sbjct: 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTR 56
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 240 LCLVGAPNVGKSSLV-RVISTGKPEVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQR 297
+ +VG PNVGKS+L+ ++ T + TTR ++G N+ + DTPG+ +
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 298 RDED 301
+ D
Sbjct: 72 KKSD 75
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 240 LCLVGAPNVGKSSLV-RVISTGKPEVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQR 297
+ +VG PNVGKS+L+ ++ T + TTR ++G N+ + DTPG+ +
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 298 RDED 301
+ D
Sbjct: 73 KKSD 76
>pdb|1FRT|A Chain A, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
pdb|3FRU|A Chain A, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|C Chain C, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|E Chain E, Neonatal Fc Receptor, Ph 6.5
pdb|1I1A|A Chain A, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
Length = 269
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 275 LMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILF------VHDLSG 328
L+GH+ G QN + + P + + + LT A + P + F + SG
Sbjct: 165 LLGHLERGRQNLEWKEPPSMRLKARPGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG 224
Query: 329 ECGTSPSDQFTIY 341
C T P+ + +
Sbjct: 225 NCSTGPNGDGSFH 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,104,624
Number of Sequences: 62578
Number of extensions: 487983
Number of successful extensions: 1527
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 61
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)