Query 037423
Match_columns 435
No_of_seqs 558 out of 3276
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 12:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037423.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037423hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1084 Predicted GTPase [Gene 100.0 1.2E-59 2.7E-64 450.1 33.2 333 73-416 2-336 (346)
2 KOG1490 GTP-binding protein CR 100.0 3.5E-60 7.7E-65 471.1 26.8 341 71-418 1-343 (620)
3 COG1160 Predicted GTPases [Gen 100.0 2.2E-27 4.7E-32 238.0 16.9 245 168-427 108-362 (444)
4 cd01897 NOG NOG1 is a nucleola 99.9 3.3E-24 7.2E-29 192.4 18.8 167 238-415 1-167 (168)
5 PF02421 FeoB_N: Ferrous iron 99.9 4.8E-23 1E-27 183.0 14.7 154 239-411 2-156 (156)
6 PRK03003 GTP-binding protein D 99.9 1.1E-22 2.3E-27 212.8 19.5 219 195-426 165-392 (472)
7 COG1160 Predicted GTPases [Gen 99.9 1.1E-22 2.3E-27 204.3 18.3 160 238-416 4-165 (444)
8 TIGR03594 GTPase_EngA ribosome 99.9 4.4E-22 9.6E-27 206.0 20.2 219 195-426 126-354 (429)
9 COG1159 Era GTPase [General fu 99.9 3.4E-22 7.3E-27 191.0 16.6 181 236-430 5-186 (298)
10 PRK00093 GTP-binding protein D 99.9 1.7E-21 3.7E-26 202.0 20.2 220 194-426 127-354 (435)
11 TIGR00436 era GTP-binding prot 99.9 2.9E-21 6.3E-26 188.0 20.3 171 239-426 2-174 (270)
12 PRK09518 bifunctional cytidyla 99.9 1.6E-21 3.5E-26 213.2 20.4 220 195-427 402-632 (712)
13 PRK12299 obgE GTPase CgtA; Rev 99.9 7.3E-21 1.6E-25 190.0 20.5 165 238-417 159-329 (335)
14 COG0486 ThdF Predicted GTPase 99.9 2.1E-20 4.7E-25 188.3 20.7 159 235-418 215-378 (454)
15 TIGR03156 GTP_HflX GTP-binding 99.9 3.7E-20 8.1E-25 186.2 21.0 160 236-414 188-350 (351)
16 cd01898 Obg Obg subfamily. Th 99.9 3.2E-20 7E-25 166.6 17.5 163 239-414 2-169 (170)
17 PRK15494 era GTPase Era; Provi 99.8 4.9E-20 1.1E-24 184.8 20.3 175 236-428 51-228 (339)
18 PRK12296 obgE GTPase CgtA; Rev 99.8 4.1E-20 8.9E-25 191.6 19.9 172 238-423 160-347 (500)
19 cd01878 HflX HflX subfamily. 99.8 8.2E-20 1.8E-24 169.9 19.9 162 235-415 39-204 (204)
20 cd04142 RRP22 RRP22 subfamily. 99.8 1.2E-19 2.6E-24 168.7 19.2 170 239-420 2-178 (198)
21 PRK12297 obgE GTPase CgtA; Rev 99.8 1.1E-19 2.5E-24 185.9 19.9 164 239-419 160-330 (424)
22 TIGR02729 Obg_CgtA Obg family 99.8 8.8E-20 1.9E-24 182.0 18.6 166 238-415 158-328 (329)
23 cd04121 Rab40 Rab40 subfamily. 99.8 2.7E-19 5.9E-24 165.1 20.1 167 237-423 6-174 (189)
24 PRK12298 obgE GTPase CgtA; Rev 99.8 1.5E-19 3.3E-24 183.8 20.2 172 239-420 161-337 (390)
25 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.5E-19 7.6E-24 159.7 18.7 159 238-416 3-164 (166)
26 cd01861 Rab6 Rab6 subfamily. 99.8 3.6E-19 7.8E-24 158.4 18.6 156 239-414 2-160 (161)
27 PRK03003 GTP-binding protein D 99.8 3E-19 6.6E-24 186.9 19.9 163 236-417 37-200 (472)
28 cd04124 RabL2 RabL2 subfamily. 99.8 6.1E-19 1.3E-23 157.9 18.8 157 239-418 2-160 (161)
29 cd01894 EngA1 EngA1 subfamily. 99.8 3.7E-19 8E-24 157.0 17.0 155 241-414 1-156 (157)
30 cd01868 Rab11_like Rab11-like. 99.8 6.6E-19 1.4E-23 157.6 18.8 159 237-415 3-164 (165)
31 PRK00089 era GTPase Era; Revie 99.8 6.4E-19 1.4E-23 173.3 19.8 173 237-424 5-179 (292)
32 TIGR03594 GTPase_EngA ribosome 99.8 4.1E-19 8.8E-24 183.9 19.0 160 239-417 1-161 (429)
33 cd04145 M_R_Ras_like M-Ras/R-R 99.8 8E-19 1.7E-23 156.5 18.0 158 237-415 2-163 (164)
34 cd04120 Rab12 Rab12 subfamily. 99.8 9.9E-19 2.2E-23 163.0 19.3 159 239-417 2-164 (202)
35 cd01865 Rab3 Rab3 subfamily. 99.8 1.1E-18 2.4E-23 156.7 18.9 159 238-416 2-163 (165)
36 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 8.7E-19 1.9E-23 162.9 18.8 162 238-419 1-171 (201)
37 cd01867 Rab8_Rab10_Rab13_like 99.8 1.1E-18 2.4E-23 156.9 18.9 160 237-416 3-165 (167)
38 cd04136 Rap_like Rap-like subf 99.8 7E-19 1.5E-23 156.7 17.1 157 238-415 2-162 (163)
39 cd04109 Rab28 Rab28 subfamily. 99.8 1.4E-18 3E-23 163.4 20.0 161 238-418 1-168 (215)
40 cd04127 Rab27A Rab27a subfamil 99.8 1.1E-18 2.3E-23 158.7 18.6 160 237-416 4-177 (180)
41 cd04119 RJL RJL (RabJ-Like) su 99.8 1.3E-18 2.9E-23 155.2 18.9 158 239-416 2-167 (168)
42 KOG0084 GTPase Rab1/YPT1, smal 99.8 7.9E-19 1.7E-23 157.7 17.2 168 236-423 8-179 (205)
43 cd04144 Ras2 Ras2 subfamily. 99.8 9.2E-19 2E-23 161.3 18.2 161 239-420 1-167 (190)
44 cd01879 FeoB Ferrous iron tran 99.8 5.7E-19 1.2E-23 156.3 16.0 155 242-415 1-156 (158)
45 cd04106 Rab23_lke Rab23-like s 99.8 1.3E-18 2.8E-23 154.9 18.3 156 239-414 2-161 (162)
46 cd04112 Rab26 Rab26 subfamily. 99.8 1.7E-18 3.7E-23 159.7 19.6 162 239-420 2-167 (191)
47 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.6E-18 3.4E-23 152.8 18.6 155 237-415 1-156 (157)
48 cd00877 Ran Ran (Ras-related n 99.8 1E-18 2.3E-23 157.5 17.6 158 238-417 1-160 (166)
49 cd01866 Rab2 Rab2 subfamily. 99.8 1.7E-18 3.8E-23 155.9 19.1 161 237-417 4-167 (168)
50 cd04122 Rab14 Rab14 subfamily. 99.8 1.8E-18 3.9E-23 155.4 19.0 158 238-416 3-164 (166)
51 PRK11058 GTPase HflX; Provisio 99.8 1.1E-18 2.4E-23 179.5 19.9 163 237-417 197-363 (426)
52 smart00175 RAB Rab subfamily o 99.8 2.1E-18 4.7E-23 153.5 19.3 159 238-416 1-162 (164)
53 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.4E-18 3.1E-23 154.0 17.8 156 238-415 2-161 (162)
54 cd01864 Rab19 Rab19 subfamily. 99.8 1.9E-18 4E-23 154.9 18.5 158 237-414 3-164 (165)
55 KOG0092 GTPase Rab5/YPT51 and 99.8 5.8E-19 1.3E-23 158.0 14.8 168 236-423 4-174 (200)
56 cd01881 Obg_like The Obg-like 99.8 5.2E-19 1.1E-23 159.3 14.7 162 242-414 1-175 (176)
57 cd04175 Rap1 Rap1 subgroup. T 99.8 1.3E-18 2.9E-23 155.6 17.2 158 238-416 2-163 (164)
58 cd04110 Rab35 Rab35 subfamily. 99.8 2.2E-18 4.7E-23 160.1 18.8 161 237-417 6-168 (199)
59 PRK05291 trmE tRNA modificatio 99.8 1.3E-18 2.8E-23 180.7 19.1 153 236-417 214-371 (449)
60 smart00173 RAS Ras subfamily o 99.8 2E-18 4.3E-23 154.2 17.4 158 238-416 1-162 (164)
61 cd04113 Rab4 Rab4 subfamily. 99.8 3E-18 6.5E-23 152.7 18.3 156 239-414 2-160 (161)
62 cd04117 Rab15 Rab15 subfamily. 99.8 4.2E-18 9.1E-23 152.6 18.8 156 239-414 2-160 (161)
63 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3.8E-18 8.3E-23 154.8 18.5 159 238-417 3-165 (172)
64 PRK00093 GTP-binding protein D 99.8 2.3E-18 5E-23 178.6 19.4 159 238-415 2-161 (435)
65 PLN03071 GTP-binding nuclear p 99.8 3.6E-18 7.8E-23 161.2 18.5 162 235-418 11-174 (219)
66 cd04118 Rab24 Rab24 subfamily. 99.8 3.3E-18 7.2E-23 157.5 17.9 164 239-418 2-168 (193)
67 cd01874 Cdc42 Cdc42 subfamily. 99.8 2E-18 4.3E-23 157.2 16.1 165 238-414 2-173 (175)
68 PRK09518 bifunctional cytidyla 99.8 4.2E-18 9.2E-23 186.4 21.5 164 235-417 273-437 (712)
69 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 6.9E-18 1.5E-22 151.0 18.9 160 238-416 1-166 (168)
70 cd04140 ARHI_like ARHI subfami 99.8 4.2E-18 9.2E-23 152.9 17.5 156 238-414 2-163 (165)
71 cd01862 Rab7 Rab7 subfamily. 99.8 8.8E-18 1.9E-22 150.9 19.4 161 238-418 1-169 (172)
72 cd04171 SelB SelB subfamily. 99.8 6E-18 1.3E-22 150.5 18.1 155 239-413 2-163 (164)
73 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 6.7E-18 1.4E-22 152.9 18.7 161 239-417 2-166 (170)
74 cd01895 EngA2 EngA2 subfamily. 99.8 8.8E-18 1.9E-22 150.2 19.1 166 237-414 2-173 (174)
75 cd04176 Rap2 Rap2 subgroup. T 99.8 4.9E-18 1.1E-22 151.6 17.2 157 238-415 2-162 (163)
76 cd04125 RabA_like RabA-like su 99.8 1E-17 2.2E-22 153.8 19.8 165 238-422 1-168 (188)
77 TIGR00450 mnmE_trmE_thdF tRNA 99.8 5.4E-18 1.2E-22 175.3 20.0 157 235-418 201-362 (442)
78 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.4E-18 5.1E-23 154.2 15.0 160 239-413 1-166 (167)
79 cd04128 Spg1 Spg1p. Spg1p (se 99.8 9.9E-18 2.2E-22 153.7 19.4 164 239-418 2-168 (182)
80 cd04114 Rab30 Rab30 subfamily. 99.8 1.3E-17 2.8E-22 149.6 18.9 159 237-415 7-168 (169)
81 KOG0078 GTP-binding protein SE 99.8 4.7E-18 1E-22 154.7 16.0 163 236-418 11-176 (207)
82 cd04146 RERG_RasL11_like RERG/ 99.8 4.4E-18 9.5E-23 152.5 15.8 158 239-416 1-164 (165)
83 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.3E-17 2.8E-22 150.5 18.9 160 237-415 2-168 (170)
84 cd04123 Rab21 Rab21 subfamily. 99.8 1.4E-17 3.1E-22 147.5 18.8 157 239-415 2-161 (162)
85 cd04101 RabL4 RabL4 (Rab-like4 99.8 1.5E-17 3.3E-22 148.5 19.1 157 239-415 2-163 (164)
86 cd04133 Rop_like Rop subfamily 99.8 8.5E-18 1.8E-22 153.4 17.7 166 238-415 2-172 (176)
87 cd04132 Rho4_like Rho4-like su 99.8 9.1E-18 2E-22 153.7 17.9 166 239-421 2-172 (187)
88 cd04111 Rab39 Rab39 subfamily. 99.8 1.1E-17 2.3E-22 157.1 18.7 166 238-423 3-173 (211)
89 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.1E-17 2.4E-22 153.4 18.4 168 236-415 4-179 (182)
90 cd01863 Rab18 Rab18 subfamily. 99.8 1.1E-17 2.3E-22 149.0 17.7 156 238-414 1-160 (161)
91 cd04157 Arl6 Arl6 subfamily. 99.8 7.8E-18 1.7E-22 149.8 16.6 155 239-413 1-161 (162)
92 PTZ00369 Ras-like protein; Pro 99.8 9.3E-18 2E-22 154.5 17.6 162 236-418 4-169 (189)
93 cd01860 Rab5_related Rab5-rela 99.8 1.1E-17 2.4E-22 149.0 17.6 158 238-415 2-162 (163)
94 cd04158 ARD1 ARD1 subfamily. 99.8 1E-17 2.2E-22 151.3 17.4 158 239-418 1-163 (169)
95 PLN03110 Rab GTPase; Provision 99.8 1.7E-17 3.6E-22 156.3 19.4 162 236-417 11-175 (216)
96 smart00174 RHO Rho (Ras homolo 99.8 6.7E-18 1.4E-22 152.4 16.0 164 240-415 1-171 (174)
97 cd04139 RalA_RalB RalA/RalB su 99.8 1.6E-17 3.5E-22 147.7 18.1 158 238-416 1-162 (164)
98 cd04149 Arf6 Arf6 subfamily. 99.8 1.5E-17 3.3E-22 150.3 18.0 156 236-413 8-167 (168)
99 cd04131 Rnd Rnd subfamily. Th 99.8 1.6E-17 3.5E-22 151.8 18.1 166 238-415 2-175 (178)
100 cd04154 Arl2 Arl2 subfamily. 99.8 1.4E-17 3E-22 150.8 17.6 156 236-413 13-172 (173)
101 PRK04213 GTP-binding protein; 99.8 2E-17 4.3E-22 153.4 18.8 167 236-419 8-195 (201)
102 KOG1489 Predicted GTP-binding 99.8 3E-18 6.5E-23 164.1 13.3 162 238-414 197-365 (366)
103 cd04163 Era Era subfamily. Er 99.8 3E-17 6.5E-22 145.2 19.0 163 237-414 3-167 (168)
104 cd00154 Rab Rab family. Rab G 99.8 2.3E-17 5E-22 144.8 17.9 154 239-412 2-158 (159)
105 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.6E-17 5.7E-22 156.4 19.5 169 237-417 13-189 (232)
106 cd01889 SelB_euk SelB subfamil 99.8 1.2E-17 2.7E-22 154.1 16.8 161 239-416 2-186 (192)
107 cd04116 Rab9 Rab9 subfamily. 99.8 2.4E-17 5.3E-22 148.3 18.3 158 236-414 4-169 (170)
108 cd01875 RhoG RhoG subfamily. 99.8 1.6E-17 3.5E-22 153.3 17.4 169 237-417 3-178 (191)
109 cd04148 RGK RGK subfamily. Th 99.8 2E-17 4.3E-22 156.4 18.3 163 238-421 1-168 (221)
110 cd04126 Rab20 Rab20 subfamily. 99.8 1.4E-17 3E-22 157.2 17.2 167 239-419 2-193 (220)
111 cd01871 Rac1_like Rac1-like su 99.8 1.4E-17 3E-22 151.4 16.2 165 238-414 2-173 (174)
112 cd04134 Rho3 Rho3 subfamily. 99.8 1.4E-17 3.1E-22 153.3 16.4 169 238-418 1-176 (189)
113 cd00876 Ras Ras family. The R 99.8 2.1E-17 4.5E-22 146.2 16.7 155 239-414 1-159 (160)
114 PLN00223 ADP-ribosylation fact 99.8 5E-17 1.1E-21 148.9 18.7 160 236-417 16-179 (181)
115 PRK00454 engB GTP-binding prot 99.8 7.9E-17 1.7E-21 148.3 20.2 168 235-417 22-195 (196)
116 COG0218 Predicted GTPase [Gene 99.8 7.7E-17 1.7E-21 146.7 19.6 168 235-417 22-198 (200)
117 cd04147 Ras_dva Ras-dva subfam 99.8 2.3E-17 5E-22 153.0 16.3 159 239-416 1-163 (198)
118 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.8E-17 6.1E-22 150.5 16.6 165 237-418 3-172 (183)
119 COG0536 Obg Predicted GTPase [ 99.8 1.4E-17 3.1E-22 161.4 15.2 168 240-419 162-336 (369)
120 cd01890 LepA LepA subfamily. 99.8 4.2E-17 9.1E-22 147.9 17.4 155 239-415 2-176 (179)
121 PLN03108 Rab family protein; P 99.8 7.4E-17 1.6E-21 151.2 19.5 161 237-417 6-169 (210)
122 COG0370 FeoB Fe2+ transport sy 99.8 2.1E-17 4.5E-22 173.2 17.2 164 237-419 3-167 (653)
123 cd00879 Sar1 Sar1 subfamily. 99.8 4.5E-17 9.7E-22 149.5 17.5 158 235-414 17-189 (190)
124 cd04177 RSR1 RSR1 subgroup. R 99.8 5E-17 1.1E-21 146.3 17.4 157 238-415 2-163 (168)
125 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 2.9E-17 6.4E-22 147.2 15.5 164 236-419 21-188 (221)
126 cd04150 Arf1_5_like Arf1-Arf5- 99.8 4.1E-17 8.8E-22 146.0 16.6 155 239-413 2-158 (159)
127 PLN03118 Rab family protein; P 99.7 6.1E-17 1.3E-21 151.7 18.3 164 236-420 13-181 (211)
128 smart00176 RAN Ran (Ras-relate 99.7 4.9E-17 1.1E-21 151.3 17.2 153 243-418 1-156 (200)
129 cd04151 Arl1 Arl1 subfamily. 99.7 5.5E-17 1.2E-21 144.5 16.8 154 239-413 1-157 (158)
130 smart00177 ARF ARF-like small 99.7 8.3E-17 1.8E-21 146.4 18.2 160 236-415 12-173 (175)
131 PTZ00133 ADP-ribosylation fact 99.7 8.6E-17 1.9E-21 147.4 18.5 163 236-418 16-180 (182)
132 cd04143 Rhes_like Rhes_like su 99.7 5.7E-17 1.2E-21 155.8 17.9 157 239-416 2-171 (247)
133 COG2262 HflX GTPases [General 99.7 7.7E-17 1.7E-21 160.1 19.0 169 235-420 190-360 (411)
134 cd01893 Miro1 Miro1 subfamily. 99.7 5.8E-17 1.3E-21 145.7 16.6 159 239-416 2-164 (166)
135 TIGR03598 GTPase_YsxC ribosome 99.7 6.7E-17 1.5E-21 147.5 17.2 156 235-405 16-179 (179)
136 cd04130 Wrch_1 Wrch-1 subfamil 99.7 3.3E-17 7.2E-22 148.3 15.1 164 238-413 1-171 (173)
137 cd04137 RheB Rheb (Ras Homolog 99.7 1E-16 2.2E-21 145.7 18.2 162 238-420 2-167 (180)
138 cd00878 Arf_Arl Arf (ADP-ribos 99.7 7.3E-17 1.6E-21 143.3 16.7 154 239-413 1-157 (158)
139 cd04156 ARLTS1 ARLTS1 subfamil 99.7 4.2E-17 9.2E-22 145.0 15.2 156 239-413 1-159 (160)
140 cd00881 GTP_translation_factor 99.7 9.9E-17 2.1E-21 146.0 17.9 160 239-416 1-187 (189)
141 KOG0098 GTPase Rab2, small G p 99.7 6E-17 1.3E-21 144.1 15.8 158 236-415 5-167 (216)
142 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 1E-16 2.3E-21 151.4 18.4 168 238-417 2-177 (222)
143 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.1E-16 2.4E-21 145.2 17.7 158 236-413 14-173 (174)
144 PRK09554 feoB ferrous iron tra 99.7 6.3E-17 1.4E-21 177.0 18.7 163 237-416 3-168 (772)
145 KOG0079 GTP-binding protein H- 99.7 3.1E-17 6.7E-22 140.5 12.7 162 238-419 9-172 (198)
146 cd00157 Rho Rho (Ras homology) 99.7 5.8E-17 1.3E-21 145.4 15.2 163 238-413 1-170 (171)
147 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 4.3E-17 9.4E-22 146.7 14.2 156 240-413 2-163 (164)
148 cd01892 Miro2 Miro2 subfamily. 99.7 5.6E-17 1.2E-21 146.7 14.9 160 236-416 3-166 (169)
149 cd04135 Tc10 TC10 subfamily. 99.7 9.5E-17 2.1E-21 144.9 16.4 165 239-415 2-173 (174)
150 cd04103 Centaurin_gamma Centau 99.7 8.5E-17 1.8E-21 144.1 15.9 151 239-414 2-157 (158)
151 KOG0087 GTPase Rab11/YPT3, sma 99.7 4.1E-17 8.9E-22 148.1 13.4 160 236-415 13-175 (222)
152 cd01896 DRG The developmentall 99.7 1.1E-16 2.5E-21 152.4 17.3 160 239-416 2-226 (233)
153 PF00071 Ras: Ras family; Int 99.7 1.1E-16 2.4E-21 142.6 15.7 158 239-416 1-161 (162)
154 cd01870 RhoA_like RhoA-like su 99.7 1.2E-16 2.6E-21 144.4 15.6 166 238-415 2-174 (175)
155 cd01873 RhoBTB RhoBTB subfamil 99.7 1.6E-16 3.6E-21 147.3 16.8 164 238-414 3-194 (195)
156 smart00178 SAR Sar1p-like memb 99.7 2E-16 4.3E-21 145.1 17.1 160 236-414 16-183 (184)
157 PF00009 GTP_EFTU: Elongation 99.7 4.7E-17 1E-21 149.8 12.5 161 237-416 3-187 (188)
158 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.9E-16 4.1E-21 142.9 15.8 156 239-413 1-166 (167)
159 KOG1423 Ras-like GTPase ERA [C 99.7 9.9E-17 2.1E-21 152.9 14.4 188 236-428 71-283 (379)
160 TIGR00231 small_GTP small GTP- 99.7 5E-16 1.1E-20 135.5 17.5 155 238-412 2-160 (161)
161 cd00880 Era_like Era (E. coli 99.7 3.8E-16 8.2E-21 136.4 16.1 160 242-414 1-162 (163)
162 cd04159 Arl10_like Arl10-like 99.7 4.8E-16 1E-20 136.6 16.7 154 240-413 2-158 (159)
163 TIGR00437 feoB ferrous iron tr 99.7 2E-16 4.3E-21 169.3 16.7 153 244-415 1-154 (591)
164 cd04129 Rho2 Rho2 subfamily. 99.7 6.3E-16 1.4E-20 142.0 17.3 171 238-420 2-177 (187)
165 KOG0095 GTPase Rab30, small G 99.7 3.2E-16 6.9E-21 134.4 14.0 160 237-416 7-169 (213)
166 KOG0394 Ras-related GTPase [Ge 99.7 1.6E-16 3.5E-21 141.1 12.5 166 237-420 9-182 (210)
167 cd04155 Arl3 Arl3 subfamily. 99.7 1.1E-15 2.3E-20 137.8 18.1 158 236-413 13-172 (173)
168 PRK15467 ethanolamine utilizat 99.7 4.8E-16 1E-20 139.3 15.5 148 239-421 3-152 (158)
169 KOG1191 Mitochondrial GTPase [ 99.7 2.3E-16 4.9E-21 159.0 14.0 173 235-419 266-453 (531)
170 cd01891 TypA_BipA TypA (tyrosi 99.7 1.7E-15 3.6E-20 140.0 18.6 151 238-407 3-173 (194)
171 COG1163 DRG Predicted GTPase [ 99.7 1.9E-16 4.1E-21 152.4 12.4 164 236-417 62-290 (365)
172 PRK05306 infB translation init 99.7 7.4E-16 1.6E-20 168.1 18.0 161 235-414 288-450 (787)
173 TIGR02528 EutP ethanolamine ut 99.7 5.3E-16 1.2E-20 135.5 13.2 139 239-412 2-141 (142)
174 TIGR00487 IF-2 translation ini 99.7 1.2E-15 2.6E-20 162.6 18.6 160 235-413 85-247 (587)
175 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.3E-15 5E-20 139.5 17.8 176 239-422 2-190 (196)
176 PTZ00132 GTP-binding nuclear p 99.7 5.5E-15 1.2E-19 138.8 18.8 161 235-419 7-171 (215)
177 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.8E-15 3.8E-20 140.4 15.0 150 238-404 3-171 (195)
178 cd01876 YihA_EngB The YihA (En 99.7 4.9E-15 1.1E-19 131.4 17.1 161 240-415 2-170 (170)
179 TIGR00475 selB selenocysteine- 99.7 3.4E-15 7.4E-20 159.6 18.8 163 239-419 2-169 (581)
180 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.5E-15 3.3E-20 142.2 14.2 154 239-407 1-185 (208)
181 cd01888 eIF2_gamma eIF2-gamma 99.7 4.8E-15 1E-19 138.2 17.0 160 239-417 2-200 (203)
182 CHL00189 infB translation init 99.6 3.6E-15 7.8E-20 161.4 18.3 162 235-415 242-409 (742)
183 KOG0093 GTPase Rab3, small G p 99.6 3.4E-15 7.4E-20 127.9 13.6 164 236-419 20-186 (193)
184 KOG0080 GTPase Rab18, small G 99.6 3.9E-15 8.6E-20 129.3 13.9 162 236-417 10-175 (209)
185 KOG0086 GTPase Rab4, small G p 99.6 7.6E-15 1.6E-19 126.5 14.5 170 237-431 9-183 (214)
186 TIGR00491 aIF-2 translation in 99.6 1.1E-14 2.4E-19 155.1 18.9 167 236-416 3-216 (590)
187 PF01926 MMR_HSR1: 50S ribosom 99.6 8.7E-15 1.9E-19 123.9 14.6 114 239-359 1-116 (116)
188 PF00025 Arf: ADP-ribosylation 99.6 5.8E-15 1.3E-19 134.5 13.2 162 235-415 12-175 (175)
189 cd01899 Ygr210 Ygr210 subfamil 99.6 1.8E-14 3.8E-19 143.0 17.3 87 240-328 1-111 (318)
190 PRK10512 selenocysteinyl-tRNA- 99.6 2.8E-14 6E-19 153.2 19.1 158 239-417 2-167 (614)
191 TIGR01393 lepA GTP-binding pro 99.6 2.8E-14 6.1E-19 152.8 19.0 159 238-418 4-182 (595)
192 cd04165 GTPBP1_like GTPBP1-lik 99.6 5.1E-14 1.1E-18 133.3 17.9 155 239-413 1-220 (224)
193 cd00882 Ras_like_GTPase Ras-li 99.6 1.2E-14 2.7E-19 125.0 12.3 152 242-412 1-156 (157)
194 PRK12317 elongation factor 1-a 99.6 1.4E-14 3.1E-19 149.9 14.7 160 236-408 5-197 (425)
195 cd01883 EF1_alpha Eukaryotic e 99.6 2.8E-14 6.1E-19 134.7 14.8 156 239-405 1-194 (219)
196 KOG0091 GTPase Rab39, small G 99.6 2.9E-14 6.4E-19 124.3 11.9 163 236-418 7-175 (213)
197 PRK09602 translation-associate 99.6 1.2E-13 2.6E-18 141.0 18.4 177 238-429 2-284 (396)
198 CHL00071 tufA elongation facto 99.6 6.6E-14 1.4E-18 144.1 16.3 151 236-403 11-180 (409)
199 PRK05433 GTP-binding protein L 99.6 1.5E-13 3.3E-18 147.3 19.0 160 237-418 7-186 (600)
200 PRK09866 hypothetical protein; 99.5 4.5E-13 9.7E-18 140.4 20.9 117 284-413 230-350 (741)
201 KOG0395 Ras-related GTPase [Ge 99.5 1.9E-13 4.2E-18 126.6 16.4 161 237-418 3-167 (196)
202 PRK12736 elongation factor Tu; 99.5 1.3E-13 2.7E-18 141.4 16.7 164 236-416 11-201 (394)
203 cd04102 RabL3 RabL3 (Rab-like3 99.5 2.6E-13 5.6E-18 126.5 16.8 148 239-402 2-176 (202)
204 cd04104 p47_IIGP_like p47 (47- 99.5 1.1E-13 2.3E-18 128.6 13.9 171 238-421 2-189 (197)
205 PRK04004 translation initiatio 99.5 4E-13 8.6E-18 143.6 19.5 167 235-415 4-217 (586)
206 TIGR01394 TypA_BipA GTP-bindin 99.5 3.7E-13 8.1E-18 143.9 19.1 162 238-418 2-193 (594)
207 PLN03127 Elongation factor Tu; 99.5 2.3E-13 5E-18 141.2 16.7 165 235-416 59-252 (447)
208 PF10662 PduV-EutP: Ethanolami 99.5 2.2E-13 4.7E-18 118.9 13.9 141 238-412 2-142 (143)
209 KOG0088 GTPase Rab21, small G 99.5 1.8E-14 4E-19 124.8 6.9 163 236-418 12-177 (218)
210 cd04168 TetM_like Tet(M)-like 99.5 5.7E-13 1.2E-17 127.3 17.9 113 239-365 1-131 (237)
211 PRK12735 elongation factor Tu; 99.5 2.3E-13 4.9E-18 139.6 16.1 164 236-416 11-203 (396)
212 TIGR00483 EF-1_alpha translati 99.5 2.3E-13 5E-18 140.9 15.9 156 235-406 5-197 (426)
213 TIGR03680 eif2g_arch translati 99.5 4E-13 8.7E-18 138.2 17.2 161 236-416 3-196 (406)
214 PRK10218 GTP-binding protein; 99.5 3.3E-13 7.1E-18 144.3 16.5 163 237-418 5-197 (607)
215 PTZ00258 GTP-binding protein; 99.5 6.7E-13 1.4E-17 134.4 17.6 91 235-327 19-126 (390)
216 COG0532 InfB Translation initi 99.5 2.4E-13 5.2E-18 139.3 13.9 167 235-418 3-172 (509)
217 PRK00049 elongation factor Tu; 99.5 4.5E-13 9.8E-18 137.3 15.8 164 236-416 11-203 (396)
218 KOG0462 Elongation factor-type 99.5 3.9E-13 8.5E-18 137.0 14.7 161 236-418 59-237 (650)
219 TIGR02034 CysN sulfate adenyly 99.5 4.5E-13 9.7E-18 137.8 15.4 153 239-406 2-187 (406)
220 PRK04000 translation initiatio 99.5 1E-12 2.2E-17 135.3 17.8 163 235-417 7-202 (411)
221 KOG0073 GTP-binding ADP-ribosy 99.5 2.7E-12 5.8E-17 112.3 16.7 163 236-417 15-179 (185)
222 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.4E-12 2.9E-17 127.7 16.5 138 226-366 27-169 (313)
223 KOG0081 GTPase Rab27, small G 99.5 2E-13 4.3E-18 118.5 9.2 157 240-416 12-181 (219)
224 COG3596 Predicted GTPase [Gene 99.5 1.1E-12 2.3E-17 124.5 14.7 181 235-421 37-227 (296)
225 PRK05124 cysN sulfate adenylyl 99.5 9.4E-13 2E-17 137.7 15.7 159 235-408 25-217 (474)
226 cd01886 EF-G Elongation factor 99.5 1.7E-12 3.6E-17 126.4 16.4 113 239-365 1-131 (270)
227 COG1100 GTPase SAR1 and relate 99.5 3.2E-12 6.8E-17 119.8 17.8 171 238-418 6-187 (219)
228 cd04105 SR_beta Signal recogni 99.5 2.9E-12 6.3E-17 119.6 17.2 118 238-367 1-126 (203)
229 TIGR00485 EF-Tu translation el 99.5 8.9E-13 1.9E-17 135.2 14.9 150 236-402 11-179 (394)
230 PRK05506 bifunctional sulfate 99.5 8.4E-13 1.8E-17 143.1 15.4 156 236-406 23-211 (632)
231 cd01853 Toc34_like Toc34-like 99.4 4.5E-12 9.7E-17 121.8 18.2 132 235-368 29-167 (249)
232 PLN03126 Elongation factor Tu; 99.4 1.6E-12 3.5E-17 135.7 16.2 151 235-402 79-248 (478)
233 cd04167 Snu114p Snu114p subfam 99.4 1.4E-12 3.1E-17 122.4 14.1 112 239-364 2-137 (213)
234 KOG0083 GTPase Rab26/Rab37, sm 99.4 3.4E-13 7.4E-18 113.8 8.4 158 242-420 2-164 (192)
235 KOG0097 GTPase Rab14, small G 99.4 3.7E-12 7.9E-17 108.6 14.4 157 237-414 11-171 (215)
236 PF04548 AIG1: AIG1 family; I 99.4 2.8E-12 6E-17 120.5 15.0 180 239-426 2-196 (212)
237 PF06858 NOG1: Nucleolar GTP-b 99.4 8.2E-13 1.8E-17 95.9 7.8 58 304-361 1-58 (58)
238 KOG1145 Mitochondrial translat 99.4 4.8E-12 1E-16 129.1 15.7 166 234-416 150-316 (683)
239 TIGR00484 EF-G translation elo 99.4 4.7E-12 1E-16 138.5 16.8 115 237-365 10-142 (689)
240 PRK12739 elongation factor G; 99.4 6.9E-12 1.5E-16 137.2 17.9 116 236-365 7-140 (691)
241 PRK00007 elongation factor G; 99.4 8.3E-12 1.8E-16 136.6 18.4 115 237-365 10-142 (693)
242 PTZ00099 rab6; Provisional 99.4 9.2E-12 2E-16 113.6 15.7 121 278-418 21-144 (176)
243 PRK09601 GTP-binding protein Y 99.4 1.1E-11 2.3E-16 124.3 16.6 87 238-328 3-108 (364)
244 cd01885 EF2 EF2 (for archaea a 99.4 6.2E-12 1.3E-16 118.8 14.1 112 238-363 1-138 (222)
245 PF08477 Miro: Miro-like prote 99.4 1.2E-12 2.6E-17 110.7 8.3 112 239-361 1-119 (119)
246 PTZ00141 elongation factor 1- 99.4 7.1E-12 1.5E-16 130.2 15.6 157 236-406 6-203 (446)
247 KOG0075 GTP-binding ADP-ribosy 99.4 3.6E-12 7.8E-17 109.5 10.6 163 237-417 20-183 (186)
248 PLN00023 GTP-binding protein; 99.4 6.2E-12 1.3E-16 123.8 13.8 119 236-365 20-166 (334)
249 KOG0393 Ras-related small GTPa 99.4 1.7E-12 3.6E-17 118.9 9.1 170 237-419 4-182 (198)
250 PRK00741 prfC peptide chain re 99.4 2.2E-11 4.8E-16 128.7 18.7 116 236-365 9-146 (526)
251 KOG0410 Predicted GTP binding 99.4 6.4E-12 1.4E-16 121.1 13.2 164 234-419 175-344 (410)
252 COG0481 LepA Membrane GTPase L 99.4 6.9E-12 1.5E-16 126.1 13.6 160 238-419 10-189 (603)
253 COG2229 Predicted GTPase [Gene 99.4 3.4E-11 7.4E-16 107.8 16.6 157 236-414 9-176 (187)
254 cd04170 EF-G_bact Elongation f 99.4 7.6E-12 1.6E-16 121.7 13.3 113 239-365 1-131 (268)
255 cd01900 YchF YchF subfamily. 99.4 1.4E-11 2.9E-16 119.7 14.7 85 240-328 1-104 (274)
256 PTZ00327 eukaryotic translatio 99.3 1.8E-11 3.9E-16 127.1 15.9 166 236-417 33-234 (460)
257 cd01850 CDC_Septin CDC/Septin. 99.3 2.2E-11 4.8E-16 118.9 15.3 150 237-398 4-184 (276)
258 PRK13351 elongation factor G; 99.3 3.6E-11 7.9E-16 131.7 18.4 116 236-365 7-140 (687)
259 COG0466 Lon ATP-dependent Lon 99.3 1.5E-11 3.3E-16 129.4 13.9 152 92-259 206-372 (782)
260 cd04169 RF3 RF3 subfamily. Pe 99.3 5.9E-11 1.3E-15 115.4 16.9 115 238-366 3-139 (267)
261 KOG4252 GTP-binding protein [S 99.3 1.8E-12 3.9E-17 114.8 5.0 163 236-418 19-183 (246)
262 TIGR00503 prfC peptide chain r 99.3 8.6E-11 1.9E-15 124.3 18.5 115 236-364 10-146 (527)
263 KOG1532 GTPase XAB1, interacts 99.3 1.8E-11 3.8E-16 115.7 10.6 132 284-421 116-269 (366)
264 PLN00043 elongation factor 1-a 99.3 5.8E-11 1.3E-15 123.4 15.1 156 236-406 6-203 (447)
265 PRK13768 GTPase; Provisional 99.3 3.9E-11 8.4E-16 115.8 12.6 130 284-418 97-249 (253)
266 smart00053 DYNc Dynamin, GTPas 99.3 1.8E-10 3.9E-15 109.8 16.6 128 235-366 24-208 (240)
267 KOG0076 GTP-binding ADP-ribosy 99.3 3.7E-11 8E-16 106.2 10.3 166 236-418 16-189 (197)
268 COG5256 TEF1 Translation elong 99.3 7.5E-11 1.6E-15 117.6 13.7 161 236-407 6-202 (428)
269 PRK12740 elongation factor G; 99.2 1.5E-10 3.2E-15 126.6 17.1 109 243-365 1-127 (668)
270 KOG0070 GTP-binding ADP-ribosy 99.2 4.4E-11 9.6E-16 107.1 9.3 164 235-417 15-179 (181)
271 PRK14845 translation initiatio 99.2 1.4E-09 3E-14 121.8 23.2 155 248-416 472-673 (1049)
272 PRK09435 membrane ATPase/prote 99.2 1.1E-10 2.3E-15 116.3 12.5 109 283-416 148-260 (332)
273 cd01882 BMS1 Bms1. Bms1 is an 99.2 4.1E-10 8.8E-15 106.8 15.8 142 235-402 37-182 (225)
274 COG0012 Predicted GTPase, prob 99.2 1.1E-10 2.3E-15 115.7 12.2 88 237-328 2-109 (372)
275 COG2895 CysN GTPases - Sulfate 99.2 2.3E-10 4.9E-15 111.7 12.7 152 237-405 6-192 (431)
276 KOG0096 GTPase Ran/TC4/GSP1 (n 99.2 7.7E-11 1.7E-15 105.6 7.9 160 236-417 9-170 (216)
277 KOG1486 GTP-binding protein DR 99.2 1.2E-10 2.7E-15 108.7 9.2 91 236-328 61-151 (364)
278 TIGR00750 lao LAO/AO transport 99.1 2E-10 4.3E-15 113.6 10.9 110 283-416 126-238 (300)
279 KOG1707 Predicted Ras related/ 99.1 1.2E-10 2.7E-15 119.9 8.8 162 236-417 8-176 (625)
280 KOG0072 GTP-binding ADP-ribosy 99.1 2.3E-10 5E-15 98.1 8.0 164 236-418 17-181 (182)
281 KOG0090 Signal recognition par 99.1 2E-09 4.4E-14 98.5 14.5 166 236-414 37-237 (238)
282 KOG3883 Ras family small GTPas 99.1 2.6E-09 5.6E-14 92.7 14.3 166 236-420 8-179 (198)
283 COG3276 SelB Selenocysteine-sp 99.1 1.6E-09 3.5E-14 109.0 15.0 156 239-416 2-162 (447)
284 COG1217 TypA Predicted membran 99.1 1.1E-09 2.4E-14 110.1 13.6 169 236-419 4-198 (603)
285 TIGR00993 3a0901s04IAP86 chlor 99.1 1.8E-09 3.9E-14 114.0 15.7 127 237-366 118-252 (763)
286 TIGR02836 spore_IV_A stage IV 99.1 2.6E-09 5.7E-14 107.3 15.2 162 237-412 17-233 (492)
287 COG5257 GCD11 Translation init 99.1 9.4E-10 2E-14 106.2 10.8 163 236-420 9-206 (415)
288 PF00350 Dynamin_N: Dynamin fa 99.0 1.4E-09 3E-14 97.6 10.5 68 284-360 101-168 (168)
289 KOG2486 Predicted GTPase [Gene 99.0 1.2E-09 2.5E-14 103.8 10.2 173 235-415 134-315 (320)
290 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 1.9E-09 4.2E-14 102.2 11.5 173 239-418 1-178 (232)
291 cd01858 NGP_1 NGP-1. Autoanti 99.0 6.4E-10 1.4E-14 99.3 7.6 84 207-294 73-157 (157)
292 PF09439 SRPRB: Signal recogni 99.0 4.1E-10 8.9E-15 102.5 6.3 121 236-367 2-129 (181)
293 PF05049 IIGP: Interferon-indu 99.0 2.4E-09 5.2E-14 107.6 11.8 171 237-420 35-222 (376)
294 PF03029 ATP_bind_1: Conserved 99.0 7.1E-10 1.5E-14 105.9 7.3 127 285-415 92-236 (238)
295 COG4917 EutP Ethanolamine util 99.0 2.8E-09 6E-14 89.6 9.6 143 238-414 2-144 (148)
296 KOG0071 GTP-binding ADP-ribosy 99.0 7.6E-09 1.7E-13 88.5 12.2 162 236-416 16-178 (180)
297 KOG0461 Selenocysteine-specifi 99.0 8.3E-09 1.8E-13 100.4 13.9 165 236-417 6-194 (522)
298 COG4108 PrfC Peptide chain rel 99.0 1.1E-08 2.4E-13 102.6 14.3 116 236-365 11-148 (528)
299 PRK07560 elongation factor EF- 99.0 6.4E-09 1.4E-13 114.6 14.1 116 236-365 19-154 (731)
300 PF00735 Septin: Septin; Inte 98.9 6.7E-09 1.4E-13 101.6 12.0 124 238-366 5-158 (281)
301 PF03308 ArgK: ArgK protein; 98.9 2.5E-09 5.4E-14 101.7 8.5 153 236-416 28-230 (266)
302 PTZ00416 elongation factor 2; 98.9 3.7E-09 8.1E-14 117.8 10.8 114 236-363 18-157 (836)
303 TIGR00490 aEF-2 translation el 98.9 4.6E-09 9.9E-14 115.6 11.0 116 236-365 18-153 (720)
304 KOG1144 Translation initiation 98.9 8.2E-09 1.8E-13 108.6 11.8 170 235-418 473-689 (1064)
305 KOG0074 GTP-binding ADP-ribosy 98.9 6.4E-09 1.4E-13 89.1 9.1 162 235-416 15-179 (185)
306 PRK10416 signal recognition pa 98.9 2.6E-07 5.6E-12 92.0 21.2 152 236-409 113-303 (318)
307 COG1703 ArgK Putative periplas 98.9 1.9E-08 4.1E-13 96.9 12.4 112 283-418 143-256 (323)
308 cd04178 Nucleostemin_like Nucl 98.9 7.2E-09 1.6E-13 94.2 9.1 56 236-294 116-172 (172)
309 PLN00116 translation elongatio 98.9 6.8E-09 1.5E-13 115.9 10.7 115 236-364 18-164 (843)
310 cd01855 YqeH YqeH. YqeH is an 98.9 3.1E-09 6.7E-14 97.9 6.5 81 205-294 101-190 (190)
311 PRK10787 DNA-binding ATP-depen 98.9 1.1E-08 2.5E-13 112.8 11.9 152 92-259 205-371 (784)
312 KOG0458 Elongation factor 1 al 98.9 1.8E-08 3.9E-13 104.2 12.4 160 236-407 176-373 (603)
313 cd01849 YlqF_related_GTPase Yl 98.8 6.4E-09 1.4E-13 92.7 7.4 89 203-294 59-155 (155)
314 COG1161 Predicted GTPases [Gen 98.8 1.8E-09 3.9E-14 107.7 4.2 63 235-300 130-193 (322)
315 KOG2004 Mitochondrial ATP-depe 98.8 1.7E-08 3.7E-13 106.4 11.4 153 92-259 293-460 (906)
316 PRK12289 GTPase RsgA; Reviewed 98.8 1.9E-09 4.1E-14 108.5 3.6 81 205-299 151-239 (352)
317 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.4E-08 2.9E-13 99.9 9.3 91 206-299 83-181 (287)
318 KOG1487 GTP-binding protein DR 98.8 7.1E-09 1.5E-13 97.5 6.7 161 238-416 60-281 (358)
319 cd01856 YlqF YlqF. Proteins o 98.8 1.4E-08 3.1E-13 91.9 8.5 89 204-295 76-171 (171)
320 TIGR00073 hypB hydrogenase acc 98.8 3.8E-08 8.2E-13 92.1 11.3 58 350-414 148-205 (207)
321 COG5019 CDC3 Septin family pro 98.8 1.1E-07 2.3E-12 94.1 14.6 126 236-366 22-178 (373)
322 KOG1673 Ras GTPases [General f 98.8 4.9E-08 1.1E-12 85.0 10.4 172 237-423 20-193 (205)
323 TIGR03596 GTPase_YlqF ribosome 98.8 2.3E-08 5E-13 97.8 9.1 90 206-298 80-177 (276)
324 KOG2655 Septin family protein 98.7 3E-07 6.4E-12 91.6 16.1 125 237-366 21-174 (366)
325 TIGR00157 ribosome small subun 98.7 7.3E-09 1.6E-13 99.5 3.8 79 205-298 99-185 (245)
326 TIGR03597 GTPase_YqeH ribosome 98.7 3.3E-08 7.2E-13 100.2 8.7 83 205-297 129-217 (360)
327 TIGR00101 ureG urease accessor 98.7 8.8E-08 1.9E-12 89.1 10.7 104 284-415 92-195 (199)
328 PRK13796 GTPase YqeH; Provisio 98.7 1.2E-08 2.6E-13 103.6 5.0 83 205-297 135-223 (365)
329 PF03193 DUF258: Protein of un 98.7 1.2E-08 2.6E-13 91.2 4.2 88 197-298 6-101 (161)
330 PRK12288 GTPase RsgA; Reviewed 98.7 9.8E-09 2.1E-13 103.3 4.0 80 205-298 184-271 (347)
331 COG0480 FusA Translation elong 98.7 1.5E-07 3.2E-12 102.1 11.7 116 236-365 9-143 (697)
332 TIGR00763 lon ATP-dependent pr 98.6 1.1E-07 2.3E-12 105.7 10.7 153 92-260 203-370 (775)
333 TIGR01425 SRP54_euk signal rec 98.6 3E-06 6.6E-11 87.1 18.9 119 237-365 100-254 (429)
334 TIGR00064 ftsY signal recognit 98.6 3.7E-06 8E-11 82.0 18.6 106 282-409 153-261 (272)
335 COG1162 Predicted GTPases [Gen 98.6 6.8E-08 1.5E-12 94.0 5.8 89 196-298 134-230 (301)
336 PRK00098 GTPase RsgA; Reviewed 98.6 5.1E-08 1.1E-12 96.4 5.0 78 205-296 143-228 (298)
337 TIGR00092 GTP-binding protein 98.6 2.1E-07 4.5E-12 93.7 9.3 89 238-328 3-109 (368)
338 KOG1491 Predicted GTP-binding 98.6 1.2E-07 2.7E-12 92.4 6.8 90 236-329 19-127 (391)
339 COG0050 TufB GTPases - transla 98.5 1.2E-06 2.5E-11 84.2 12.9 175 236-425 11-203 (394)
340 KOG1547 Septin CDC10 and relat 98.5 3.5E-06 7.6E-11 78.8 15.6 125 237-366 46-200 (336)
341 cd01859 MJ1464 MJ1464. This f 98.5 5.8E-07 1.3E-11 79.9 10.2 85 317-417 13-97 (156)
342 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.6E-07 3.5E-12 82.3 6.5 54 239-295 85-139 (141)
343 PRK10463 hydrogenase nickel in 98.5 5.2E-07 1.1E-11 88.0 10.5 57 351-414 231-287 (290)
344 PRK14974 cell division protein 98.5 1.9E-06 4.2E-11 86.2 14.8 102 283-409 222-323 (336)
345 cd01851 GBP Guanylate-binding 98.5 8.9E-07 1.9E-11 83.9 11.4 90 236-327 6-102 (224)
346 KOG4423 GTP-binding protein-li 98.5 1.5E-08 3.2E-13 90.8 -0.8 171 236-425 24-204 (229)
347 KOG0077 Vesicle coat complex C 98.5 7.2E-07 1.6E-11 78.7 9.6 161 235-414 18-191 (193)
348 cd01859 MJ1464 MJ1464. This f 98.5 2.9E-07 6.3E-12 81.8 7.3 84 205-294 72-156 (156)
349 PRK14723 flhF flagellar biosyn 98.5 1.8E-05 3.9E-10 86.5 21.5 151 236-408 184-367 (767)
350 KOG1954 Endocytosis/signaling 98.4 1.2E-06 2.5E-11 86.4 10.3 127 236-366 57-227 (532)
351 COG0552 FtsY Signal recognitio 98.4 8E-06 1.7E-10 80.3 16.1 152 236-409 138-328 (340)
352 COG0378 HypB Ni2+-binding GTPa 98.4 5E-07 1.1E-11 82.3 6.8 57 352-415 144-200 (202)
353 PRK11889 flhF flagellar biosyn 98.4 1E-05 2.2E-10 82.0 16.5 121 236-366 240-393 (436)
354 cd01854 YjeQ_engC YjeQ/EngC. 98.4 5.6E-07 1.2E-11 88.5 6.4 79 205-297 140-226 (287)
355 cd01858 NGP_1 NGP-1. Autoanti 98.4 2.3E-06 4.9E-11 76.3 9.7 87 317-416 9-95 (157)
356 COG5258 GTPBP1 GTPase [General 98.3 4.8E-06 1E-10 82.6 12.0 168 235-416 115-338 (527)
357 PRK14721 flhF flagellar biosyn 98.3 2.8E-05 6.1E-10 80.0 18.2 145 235-404 189-365 (420)
358 PRK06995 flhF flagellar biosyn 98.3 3.9E-05 8.5E-10 80.2 19.3 146 236-408 255-435 (484)
359 COG5192 BMS1 GTP-binding prote 98.3 2E-06 4.3E-11 88.6 9.0 144 230-400 62-210 (1077)
360 cd01855 YqeH YqeH. YqeH is an 98.3 5.1E-06 1.1E-10 76.4 11.0 91 315-416 33-125 (190)
361 TIGR00157 ribosome small subun 98.3 4.6E-06 1E-10 80.1 10.6 84 317-413 37-120 (245)
362 KOG0466 Translation initiation 98.3 2.2E-06 4.9E-11 82.5 7.8 113 284-419 125-244 (466)
363 cd01849 YlqF_related_GTPase Yl 98.3 3.4E-06 7.3E-11 75.1 8.4 83 318-415 1-84 (155)
364 KOG2485 Conserved ATP/GTP bind 98.2 3.9E-06 8.5E-11 81.4 8.2 67 235-301 141-213 (335)
365 KOG0468 U5 snRNP-specific prot 98.2 6.2E-06 1.4E-10 86.5 10.1 114 236-363 127-262 (971)
366 PRK12726 flagellar biosynthesi 98.2 8.2E-05 1.8E-09 75.2 17.5 146 236-406 205-383 (407)
367 COG0488 Uup ATPase components 98.2 1.4E-06 3.1E-11 92.1 5.3 48 120-167 177-241 (530)
368 PRK00771 signal recognition pa 98.2 5.4E-05 1.2E-09 78.5 16.6 72 284-365 176-247 (437)
369 KOG3905 Dynein light intermedi 98.2 3.7E-05 8E-10 74.9 13.9 174 235-418 50-292 (473)
370 PRK14722 flhF flagellar biosyn 98.2 0.00012 2.6E-09 74.3 18.1 123 235-365 135-296 (374)
371 KOG1424 Predicted GTP-binding 98.2 2.1E-06 4.5E-11 88.0 5.1 60 237-299 314-374 (562)
372 KOG2423 Nucleolar GTPase [Gene 98.2 8.4E-07 1.8E-11 88.0 2.2 79 216-298 287-366 (572)
373 PRK12723 flagellar biosynthesi 98.2 0.00018 3.9E-09 73.5 19.2 146 237-408 174-356 (388)
374 PRK10867 signal recognition pa 98.2 0.00011 2.3E-09 76.1 17.7 72 283-364 183-254 (433)
375 cd01856 YlqF YlqF. Proteins o 98.1 1.4E-05 3.1E-10 72.2 10.1 88 310-416 14-101 (171)
376 KOG0460 Mitochondrial translat 98.1 1.9E-05 4.1E-10 77.3 11.3 149 236-400 53-219 (449)
377 KOG2484 GTPase [General functi 98.1 8.8E-06 1.9E-10 81.2 9.0 78 218-299 234-312 (435)
378 TIGR03596 GTPase_YlqF ribosome 98.1 1.4E-05 3E-10 78.2 10.3 91 309-418 15-105 (276)
379 PF00448 SRP54: SRP54-type pro 98.1 2E-05 4.3E-10 73.2 10.6 73 283-365 83-155 (196)
380 PRK05703 flhF flagellar biosyn 98.1 0.00034 7.3E-09 72.6 20.2 121 236-365 220-372 (424)
381 KOG0447 Dynamin-like GTP bindi 98.1 0.00028 6.1E-09 72.9 18.2 127 235-366 306-495 (980)
382 PRK12289 GTPase RsgA; Reviewed 98.1 1.9E-05 4E-10 79.8 9.8 86 313-413 87-172 (352)
383 KOG3886 GTP-binding protein [S 98.1 1.1E-05 2.3E-10 75.2 7.1 122 237-368 4-134 (295)
384 PRK12727 flagellar biosynthesi 98.0 4.4E-05 9.6E-10 80.1 12.5 119 235-364 348-498 (559)
385 KOG0448 Mitofusin 1 GTPase, in 98.0 4.6E-05 1E-09 80.7 12.4 121 235-366 107-277 (749)
386 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.7E-05 3.7E-10 69.4 7.9 80 309-403 5-84 (141)
387 KOG1143 Predicted translation 98.0 3.2E-05 7E-10 76.5 10.0 161 238-411 168-383 (591)
388 KOG0467 Translation elongation 98.0 1.7E-05 3.7E-10 84.6 8.5 112 236-361 8-135 (887)
389 TIGR00959 ffh signal recogniti 98.0 0.0002 4.3E-09 74.1 16.3 72 283-364 182-253 (428)
390 PRK00098 GTPase RsgA; Reviewed 98.0 3.2E-05 7E-10 76.5 9.7 83 317-412 81-163 (298)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.0 3.3E-05 7.1E-10 76.0 9.4 83 317-413 79-161 (287)
392 PRK12724 flagellar biosynthesi 98.0 0.0021 4.5E-08 66.1 22.4 122 237-365 223-374 (432)
393 PF05783 DLIC: Dynein light in 97.9 0.00018 3.8E-09 75.2 14.3 69 350-418 196-266 (472)
394 TIGR03597 GTPase_YqeH ribosome 97.9 9.6E-05 2.1E-09 75.1 11.8 90 312-414 59-151 (360)
395 PRK09563 rbgA GTPase YlqF; Rev 97.9 6.6E-05 1.4E-09 73.9 10.1 90 310-418 19-108 (287)
396 PRK12288 GTPase RsgA; Reviewed 97.9 8.5E-05 1.9E-09 74.9 11.0 84 318-413 122-205 (347)
397 COG1419 FlhF Flagellar GTP-bin 97.9 0.00014 3.1E-09 73.6 11.9 119 236-365 202-353 (407)
398 cd03112 CobW_like The function 97.8 3.9E-05 8.6E-10 68.6 6.7 23 238-260 1-23 (158)
399 PRK06731 flhF flagellar biosyn 97.8 0.00029 6.3E-09 68.6 12.5 122 235-366 73-227 (270)
400 KOG0464 Elongation factor G [T 97.8 1.4E-05 3E-10 79.9 2.7 115 237-365 37-169 (753)
401 PRK01889 GTPase RsgA; Reviewed 97.6 8.7E-05 1.9E-09 75.2 6.6 81 317-412 113-193 (356)
402 TIGR03348 VI_IcmF type VI secr 97.6 0.00017 3.7E-09 83.7 9.7 123 238-365 112-258 (1169)
403 PRK01889 GTPase RsgA; Reviewed 97.6 2.3E-05 4.9E-10 79.5 2.1 81 204-297 172-260 (356)
404 PRK13796 GTPase YqeH; Provisio 97.6 0.00035 7.5E-09 71.1 10.7 93 310-415 63-158 (365)
405 KOG3859 Septins (P-loop GTPase 97.6 0.00023 5E-09 68.1 8.4 122 237-366 42-192 (406)
406 COG0541 Ffh Signal recognition 97.6 0.0014 3E-08 66.8 14.5 73 283-365 182-254 (451)
407 smart00010 small_GTPase Small 97.6 5E-05 1.1E-09 63.8 3.6 113 239-405 2-115 (124)
408 KOG0465 Mitochondrial elongati 97.6 0.00012 2.6E-09 76.6 6.6 116 237-366 39-172 (721)
409 KOG0780 Signal recognition par 97.5 0.0009 2E-08 66.9 11.4 119 236-364 100-254 (483)
410 cd03115 SRP The signal recogni 97.5 0.0017 3.6E-08 58.6 12.6 74 283-366 82-155 (173)
411 KOG0459 Polypeptide release fa 97.5 0.00026 5.7E-09 70.9 6.8 165 236-409 78-279 (501)
412 KOG1707 Predicted Ras related/ 97.4 0.003 6.6E-08 66.2 13.8 160 235-418 423-585 (625)
413 KOG0463 GTP-binding protein GP 97.4 0.0007 1.5E-08 67.3 8.5 110 285-411 220-353 (641)
414 COG3640 CooC CO dehydrogenase 97.3 0.00057 1.2E-08 64.3 6.2 43 317-363 156-198 (255)
415 KOG1534 Putative transcription 97.3 0.0037 8.1E-08 57.8 11.3 127 284-417 98-252 (273)
416 KOG3887 Predicted small GTPase 97.2 0.0012 2.5E-08 62.2 8.0 117 237-366 27-151 (347)
417 KOG0781 Signal recognition par 97.2 0.016 3.5E-07 59.6 16.2 76 283-365 466-545 (587)
418 KOG1533 Predicted GTPase [Gene 97.2 0.0013 2.9E-08 61.7 7.5 82 283-367 96-180 (290)
419 cd03114 ArgK-like The function 97.1 0.0017 3.7E-08 57.5 7.5 19 240-258 2-20 (148)
420 smart00275 G_alpha G protein a 97.1 0.0039 8.4E-08 62.9 10.8 140 270-418 170-336 (342)
421 COG3523 IcmF Type VI protein s 97.1 0.0013 2.7E-08 75.2 7.9 121 238-365 126-271 (1188)
422 cd00066 G-alpha G protein alph 97.0 0.005 1.1E-07 61.5 10.7 140 270-418 147-313 (317)
423 KOG0066 eIF2-interacting prote 97.0 0.033 7.1E-07 56.9 16.0 56 111-166 423-499 (807)
424 COG1618 Predicted nucleotide k 96.9 0.035 7.5E-07 49.6 13.9 156 237-417 5-177 (179)
425 cd02038 FleN-like FleN is a me 96.8 0.01 2.3E-07 51.7 10.0 105 241-362 4-109 (139)
426 KOG0927 Predicted transporter 96.8 0.001 2.3E-08 69.2 3.7 48 120-167 245-310 (614)
427 cd04178 Nucleostemin_like Nucl 96.7 0.0055 1.2E-07 55.6 7.4 46 318-366 1-46 (172)
428 PF09547 Spore_IV_A: Stage IV 96.5 0.053 1.1E-06 55.5 13.6 151 236-400 16-219 (492)
429 PRK10636 putative ABC transpor 96.4 0.0012 2.5E-08 72.3 1.3 27 235-261 336-362 (638)
430 COG0523 Putative GTPases (G3E 96.3 0.019 4.1E-07 57.4 9.1 23 238-260 2-24 (323)
431 cd03111 CpaE_like This protein 96.3 0.021 4.5E-07 47.4 8.0 102 240-359 2-106 (106)
432 KOG0082 G-protein alpha subuni 96.3 0.028 6E-07 56.5 9.9 140 270-418 181-346 (354)
433 KOG0705 GTPase-activating prot 96.2 0.021 4.6E-07 59.6 9.0 160 236-417 29-190 (749)
434 PRK11147 ABC transporter ATPas 96.0 0.0024 5.3E-08 69.7 1.0 26 235-260 343-368 (635)
435 PRK13695 putative NTPase; Prov 95.9 0.15 3.3E-06 45.9 12.1 21 239-259 2-22 (174)
436 COG1162 Predicted GTPases [Gen 95.8 0.072 1.6E-06 52.3 10.1 83 320-414 83-165 (301)
437 cd02036 MinD Bacterial cell di 95.7 0.076 1.6E-06 47.5 9.5 65 285-364 64-128 (179)
438 COG0194 Gmk Guanylate kinase [ 95.7 0.0065 1.4E-07 55.4 2.4 54 236-291 3-56 (191)
439 KOG0057 Mitochondrial Fe/S clu 95.6 0.084 1.8E-06 55.5 10.4 25 235-259 376-400 (591)
440 KOG0469 Elongation factor 2 [T 95.6 0.017 3.6E-07 59.7 5.1 114 236-363 18-163 (842)
441 cd01983 Fer4_NifH The Fer4_Nif 95.6 0.06 1.3E-06 42.4 7.5 69 240-328 2-70 (99)
442 KOG2749 mRNA cleavage and poly 95.6 0.059 1.3E-06 53.7 8.6 25 235-259 101-125 (415)
443 PRK11537 putative GTP-binding 95.5 0.042 9.2E-07 54.9 7.7 23 237-259 4-26 (318)
444 PRK14737 gmk guanylate kinase; 95.5 0.013 2.8E-07 53.9 3.5 53 236-290 3-56 (186)
445 cd02042 ParA ParA and ParB of 95.4 0.11 2.3E-06 42.4 8.6 70 240-327 2-72 (104)
446 cd00009 AAA The AAA+ (ATPases 95.4 0.11 2.4E-06 43.9 9.0 25 236-260 18-42 (151)
447 cd03110 Fer4_NifH_child This p 95.2 0.2 4.4E-06 45.1 10.6 67 282-364 91-157 (179)
448 KOG1424 Predicted GTP-binding 95.0 0.063 1.4E-06 55.9 7.3 81 305-400 164-244 (562)
449 KOG1970 Checkpoint RAD17-RFC c 95.0 0.76 1.6E-05 48.6 14.9 25 236-260 109-133 (634)
450 cd03222 ABC_RNaseL_inhibitor T 95.0 0.67 1.5E-05 42.2 13.1 26 235-260 23-48 (177)
451 cd00071 GMPK Guanosine monopho 94.9 0.026 5.6E-07 49.2 3.6 52 240-293 2-55 (137)
452 KOG2484 GTPase [General functi 94.9 0.091 2E-06 53.2 7.7 47 317-366 147-193 (435)
453 TIGR03499 FlhF flagellar biosy 94.9 0.17 3.6E-06 49.7 9.5 24 236-259 193-216 (282)
454 PRK14738 gmk guanylate kinase; 94.8 0.027 5.9E-07 52.5 3.6 38 236-273 12-50 (206)
455 TIGR03263 guanyl_kin guanylate 94.8 0.034 7.3E-07 50.3 4.1 54 238-293 2-56 (180)
456 PRK10751 molybdopterin-guanine 94.8 0.03 6.4E-07 50.9 3.7 25 236-260 5-29 (173)
457 cd03116 MobB Molybdenum is an 94.8 0.025 5.5E-07 50.7 3.1 22 238-259 2-23 (159)
458 PF13207 AAA_17: AAA domain; P 94.7 0.022 4.9E-07 47.7 2.7 22 239-260 1-22 (121)
459 PRK00300 gmk guanylate kinase; 94.7 0.033 7.2E-07 51.5 3.9 25 236-260 4-28 (205)
460 PRK08181 transposase; Validate 94.7 0.089 1.9E-06 51.3 7.0 24 236-259 105-128 (269)
461 COG1116 TauB ABC-type nitrate/ 94.7 0.027 5.8E-07 53.7 3.3 26 235-260 27-52 (248)
462 COG1161 Predicted GTPases [Gen 94.7 0.16 3.5E-06 50.8 9.0 80 317-413 35-114 (322)
463 PF05621 TniB: Bacterial TniB 94.7 0.14 3.1E-06 50.3 8.3 112 235-359 59-189 (302)
464 PF00005 ABC_tran: ABC transpo 94.6 0.029 6.2E-07 48.2 3.1 27 235-261 9-35 (137)
465 PF00004 AAA: ATPase family as 94.6 0.088 1.9E-06 44.4 6.0 21 240-260 1-21 (132)
466 KOG0446 Vacuolar sorting prote 94.4 0.026 5.6E-07 61.6 2.8 27 235-261 27-53 (657)
467 COG1120 FepC ABC-type cobalami 94.1 0.043 9.3E-07 53.0 3.2 25 235-259 26-50 (258)
468 PF13555 AAA_29: P-loop contai 94.0 0.058 1.3E-06 40.3 3.1 23 236-258 22-44 (62)
469 PF00503 G-alpha: G-protein al 94.0 0.038 8.2E-07 56.7 2.9 137 270-415 221-389 (389)
470 KOG2743 Cobalamin synthesis pr 93.9 0.44 9.5E-06 46.7 9.6 25 235-259 55-79 (391)
471 PF05729 NACHT: NACHT domain 93.8 0.23 5E-06 43.4 7.4 21 239-259 2-22 (166)
472 PF13671 AAA_33: AAA domain; P 93.8 0.042 9.2E-07 47.4 2.4 20 240-259 2-21 (143)
473 cd02037 MRP-like MRP (Multiple 93.8 0.56 1.2E-05 41.9 9.9 67 282-363 66-134 (169)
474 PF02263 GBP: Guanylate-bindin 93.8 0.12 2.6E-06 50.1 5.7 61 236-296 20-86 (260)
475 COG1126 GlnQ ABC-type polar am 93.7 0.055 1.2E-06 50.7 3.1 26 235-260 26-51 (240)
476 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.6 0.06 1.3E-06 50.3 3.3 26 235-260 28-53 (218)
477 COG1341 Predicted GTPase or GT 93.6 0.92 2E-05 46.3 11.8 25 235-259 71-95 (398)
478 COG1136 SalX ABC-type antimicr 93.5 0.062 1.4E-06 50.8 3.3 26 235-260 29-54 (226)
479 smart00382 AAA ATPases associa 93.5 0.065 1.4E-06 44.7 3.1 25 237-261 2-26 (148)
480 TIGR00960 3a0501s02 Type II (G 93.5 0.065 1.4E-06 50.0 3.3 26 235-260 27-52 (216)
481 cd03225 ABC_cobalt_CbiO_domain 93.5 0.064 1.4E-06 49.8 3.2 26 235-260 25-50 (211)
482 TIGR00235 udk uridine kinase. 93.5 0.051 1.1E-06 50.6 2.5 25 235-259 4-28 (207)
483 PRK08118 topology modulation p 93.4 0.059 1.3E-06 48.6 2.8 23 238-260 2-24 (167)
484 cd03261 ABC_Org_Solvent_Resist 93.4 0.066 1.4E-06 50.7 3.3 26 235-260 24-49 (235)
485 cd03262 ABC_HisP_GlnQ_permease 93.4 0.069 1.5E-06 49.6 3.3 27 235-261 24-50 (213)
486 COG3840 ThiQ ABC-type thiamine 93.4 0.066 1.4E-06 48.9 3.0 26 235-260 23-48 (231)
487 TIGR01166 cbiO cobalt transpor 93.3 0.074 1.6E-06 48.6 3.3 26 235-260 16-41 (190)
488 TIGR02673 FtsE cell division A 93.3 0.072 1.6E-06 49.6 3.3 26 235-260 26-51 (214)
489 PRK07261 topology modulation p 93.3 0.062 1.3E-06 48.6 2.7 21 239-259 2-22 (171)
490 cd03226 ABC_cobalt_CbiO_domain 93.3 0.073 1.6E-06 49.3 3.2 26 235-260 24-49 (205)
491 TIGR00150 HI0065_YjeE ATPase, 93.2 0.29 6.3E-06 42.5 6.7 25 236-260 21-45 (133)
492 cd03269 ABC_putative_ATPase Th 93.2 0.077 1.7E-06 49.3 3.3 26 235-260 24-49 (210)
493 TIGR03608 L_ocin_972_ABC putat 93.2 0.075 1.6E-06 49.1 3.1 26 235-260 22-47 (206)
494 cd03292 ABC_FtsE_transporter F 93.2 0.077 1.7E-06 49.3 3.3 26 235-260 25-50 (214)
495 cd03238 ABC_UvrA The excision 93.1 0.081 1.7E-06 48.2 3.2 25 235-259 19-43 (176)
496 cd03259 ABC_Carb_Solutes_like 93.1 0.08 1.7E-06 49.3 3.3 26 235-260 24-49 (213)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.1 0.086 1.9E-06 46.2 3.3 27 235-261 24-50 (144)
498 TIGR02211 LolD_lipo_ex lipopro 93.1 0.08 1.7E-06 49.6 3.3 26 235-260 29-54 (221)
499 TIGR01360 aden_kin_iso1 adenyl 93.1 0.075 1.6E-06 48.1 3.0 23 236-258 2-24 (188)
500 cd03264 ABC_drug_resistance_li 93.1 0.073 1.6E-06 49.5 2.9 24 236-260 25-48 (211)
No 1
>COG1084 Predicted GTPase [General function prediction only]
Probab=100.00 E-value=1.2e-59 Score=450.14 Aligned_cols=333 Identities=29% Similarity=0.490 Sum_probs=305.7
Q ss_pred ccccccCCCCCChHHHHHHHHHhhhhhhcccccchhH--HHHHHHHHHHHHHHHHHhchhHHHhhhcCCCcccchHHHHH
Q 037423 73 VGAFQKLPMVMPSVDILSSALKKAKRVSATKGISNIA--KRERNKAAKQLDALMKELAVPLRDYVANFPNRKCLHPYERS 150 (435)
Q Consensus 73 ~~~f~~~~~v~~~~e~~~~~~~r~~~~~~~~~~~~~~--~~~r~~~~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~~ 150 (435)
.++|++||+||+++||||++|+||+|+.++....+.. .++|.++++.++.+.+.+.+.|.++++.||+.++|||||++
T Consensus 2 ~~~f~kiptv~~~~ElIdk~f~Ra~r~~~~~~~~~~~~~~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~LhpFY~e 81 (346)
T COG1084 2 MNPFKKIPTVPTADELIDKAFRRAERAESTVRPDKGPKIVKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLHPFYRE 81 (346)
T ss_pred CCccccCCCCCCcHHHHHHHHHHHHhhcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccChHHHH
Confidence 5799999999999999999999999999988777443 46777788999999999999999999999999999999999
Q ss_pred hhhhcCCCCcHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccC
Q 037423 151 LTELTLGDGNYEKVLKNVDALRKKVVSAGKEHASLCAKSLSKREAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAM 230 (435)
Q Consensus 151 l~e~~~~~~~y~~~L~~l~~~~~~i~~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~l 230 (435)
|+|+.+|.|+|+.+|+.++|++..+..+.++|+++++.+.+..++.+++++++|++.++..+.+.++..|.+++.++++|
T Consensus 82 Lidvl~d~d~~k~sLs~v~~A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~L 161 (346)
T COG1084 82 LIDVLVDIDHLKISLSAVSWASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKL 161 (346)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHH
Q 037423 231 PVVDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTL 310 (435)
Q Consensus 231 p~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~ 310 (435)
|.+|++.++++++|+||||||||+++++++++.+++|||||+++..||++.++.+||+|||||+++++.+++|.+|++++
T Consensus 162 P~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 162 PAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.++.|+.++|+|++|+|+.||++.++|..++.+++..|. .|+++|+||+|..+.+.. ++.... ....+.
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~--------~~~~~~--~~~~~~ 310 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKL--------EEIEAS--VLEEGG 310 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHH--------HHHHHH--HHhhcc
Confidence 999999999999999999999999999999999999985 899999999999865421 111111 222233
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.....+|+..+.+++.+.+.+.....
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTAL 336 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHhh
Confidence 44678899999999988888877643
No 2
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=3.5e-60 Score=471.14 Aligned_cols=341 Identities=27% Similarity=0.437 Sum_probs=321.7
Q ss_pred ccccccccCCCCCChHHHHHHHHHhhhhhhcccccchhH-HHHHHHHHHHHHHHHHHhchhHHHhhhcCCCcccchHHHH
Q 037423 71 ESVGAFQKLPMVMPSVDILSSALKKAKRVSATKGISNIA-KRERNKAAKQLDALMKELAVPLRDYVANFPNRKCLHPYER 149 (435)
Q Consensus 71 ~~~~~f~~~~~v~~~~e~~~~~~~r~~~~~~~~~~~~~~-~~~r~~~~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~ 149 (435)
+..++|++|++||++.||+|..++++|+++||.++++.. .++|+||++++++.++++.++|.+++++||...++||||.
T Consensus 1 m~~~nfk~it~Vp~~~~~~d~~ls~tQr~tPTvi~k~~~i~riR~fy~rkvk~~~~~~~~kL~~il~~FP~~~~ihPfy~ 80 (620)
T KOG1490|consen 1 MAKANFKKITPVPDVNDFLDVVLSRTQRKTPTVIRKGFKISRIRQFYARKVKFTQTTLTEKLDDILQEFPKLNDIHPFYA 80 (620)
T ss_pred CcccccccccccCchhHHHHHHHhhhccCCCCcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchH
Confidence 357999999999999999999999999999999999876 6999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCcHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhcc
Q 037423 150 SLTELTLGDGNYEKVLKNVDALRKKVVSAGKEHASLCAKSLSKREAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRA 229 (435)
Q Consensus 150 ~l~e~~~~~~~y~~~L~~l~~~~~~i~~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~ 229 (435)
+|++++++.++|+.+|++++.+++.+..++++|++|+.+.++..+|+++...+++++..+..+.+.++++|++++++++.
T Consensus 81 dL~~~ly~~dhYk~aLgqv~~ak~lv~~vakdyvrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~r 160 (620)
T KOG1490|consen 81 DLLNILYDRDHYKIALGQVSTAKHLVENVARDYVRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSR 160 (620)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH
Q 037423 230 MPVVDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT 309 (435)
Q Consensus 230 lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~ 309 (435)
+|.+|++++++++||.||||||||+|.++...+.+.+|+|||+.+..+|+++...+|+++||||+.+++.+++|.+|+++
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqs 240 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQI 240 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHH-HHhhhhc
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLE-MASYRKM 388 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~ 388 (435)
+.++.|+..+|+|++|+|+.||++..+|..++..|+.+|.++|+|+|+||+|+...+.... .... +......
T Consensus 241 ITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~-------~~~~ll~~~~~~ 313 (620)
T KOG1490|consen 241 ITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQ-------KNQELLQTIIDD 313 (620)
T ss_pred HHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCH-------HHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999998874432 2222 3334445
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.++++.+|+.+.+|+.++.+..|+.+...
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHH
Confidence 557899999999999999999999977554
No 3
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.95 E-value=2.2e-27 Score=238.02 Aligned_cols=245 Identities=22% Similarity=0.255 Sum_probs=183.0
Q ss_pred HHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHhccchhHHHHhhcCCChhHHHHHH-HHhc-cCCccC---CCCCEEEE
Q 037423 168 VDALRKKVVSAGKEHASLCAKSLSKREAEERLSEGLQRLEEVFNREGKAVDDLLNIA-KTLR-AMPVVD---LETPTLCL 242 (435)
Q Consensus 168 l~~~~~~i~~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~-~~l~-~lp~~~---~~~~~v~~ 242 (435)
+++.++++.++.++ +........+.+++..|++++..+|+.||.|+.+|++.. ..+. ...... ....++++
T Consensus 108 Lr~~~kpviLvvNK----~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiai 183 (444)
T COG1160 108 LRRSKKPVILVVNK----IDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAI 183 (444)
T ss_pred HHhcCCCEEEEEEc----ccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEE
Confidence 44444555544433 222223455789999999999999999999999999843 3321 110111 14689999
Q ss_pred ecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH----HHHHHhcCC
Q 037423 243 VGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL----TLAVLTHLP 317 (435)
Q Consensus 243 ~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~----~~~~l~~~~ 317 (435)
+|.||+|||||+|++++.+ ..+++.+|||+|.....+++++..|.++||+|+..+..- .+.+|++ +..++...
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki-~e~~E~~Sv~rt~~aI~~a- 261 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKI-TESVEKYSVARTLKAIERA- 261 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCccccc-ccceEEEeehhhHhHHhhc-
Confidence 9999999999999999764 689999999999999999999999999999999876532 2334443 23455554
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
+++++|+|++ .|.+.+|.. +...+.+. ++++|+|+||||+.+.+.. ..++....... .+......|++++|
T Consensus 262 ~vvllviDa~--~~~~~qD~~-ia~~i~~~--g~~~vIvvNKWDl~~~~~~--~~~~~k~~i~~--~l~~l~~a~i~~iS 332 (444)
T COG1160 262 DVVLLVIDAT--EGISEQDLR-IAGLIEEA--GRGIVIVVNKWDLVEEDEA--TMEEFKKKLRR--KLPFLDFAPIVFIS 332 (444)
T ss_pred CEEEEEEECC--CCchHHHHH-HHHHHHHc--CCCeEEEEEccccCCchhh--HHHHHHHHHHH--HhccccCCeEEEEE
Confidence 8999999999 788999987 77777775 8999999999999876311 11122122111 22333457999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcccccccCCCC
Q 037423 398 VMNEEGLNELKDRVYQMLVGQMDRIKSRSN 427 (435)
Q Consensus 398 A~~g~GI~eL~~~i~~~l~~~~~~~~t~~~ 427 (435)
|++|.|++++++.+.+.+..+..+++|+..
T Consensus 333 A~~~~~i~~l~~~i~~~~~~~~~ri~Ts~L 362 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYECATRRISTSLL 362 (444)
T ss_pred ecCCCChHHHHHHHHHHHHHhccccCHHHH
Confidence 999999999999999999999999998754
No 4
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=3.3e-24 Score=192.44 Aligned_cols=167 Identities=39% Similarity=0.719 Sum_probs=128.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
++|+++|++|+|||||++++++..+.+++++++|.+.......+++..+++|||||+.+.....++.++..+...+.+..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 57999999999999999999998877777889999988888877788999999999965543334444444554555656
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
|++++|+|+++..+++......|+..+...+.+.|+++|+||+|+....... . ...+......+++++|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~-------~----~~~~~~~~~~~~~~~S 149 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLS-------E----IEEEEELEGEEVLKIS 149 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHH-------H----HHHhhhhccCceEEEE
Confidence 8899999998665555566666888887765679999999999997643211 0 1222233346899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVYQML 415 (435)
Q Consensus 398 A~~g~GI~eL~~~i~~~l 415 (435)
|++|.|++++++++.+.+
T Consensus 150 a~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 150 TLTEEGVDEVKNKACELL 167 (168)
T ss_pred ecccCCHHHHHHHHHHHh
Confidence 999999999999999875
No 5
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=4.8e-23 Score=183.03 Aligned_cols=154 Identities=27% Similarity=0.372 Sum_probs=116.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH-hcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL-THLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l-~~~~ 317 (435)
+|+++|.||||||||+|+|++.+..++++||+|.+...+.+.+++..+.++||||+...... ..-|+.+..++ ...+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~--s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK--SEEERVARDYLLSEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSS--SHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCC--CcHHHHHHHHHhhcCC
Confidence 68999999999999999999999999999999999999999999999999999998664332 22345555555 3457
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
|++++|+|++. .+....+...+.+. ++|+++|+||+|......... +...+.+. -+.|++++|
T Consensus 80 D~ii~VvDa~~-----l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~i-------d~~~Ls~~---Lg~pvi~~s 142 (156)
T PF02421_consen 80 DLIIVVVDATN-----LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEI-------DAEKLSER---LGVPVIPVS 142 (156)
T ss_dssp SEEEEEEEGGG-----HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--------HHHHHHH---HTS-EEEEB
T ss_pred CEEEEECCCCC-----HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEE-------CHHHHHHH---hCCCEEEEE
Confidence 99999999983 33334577778886 899999999999987653321 11122221 246899999
Q ss_pred cCCCCCHHHHHHHH
Q 037423 398 VMNEEGLNELKDRV 411 (435)
Q Consensus 398 A~~g~GI~eL~~~i 411 (435)
|++|+|+++|+++|
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999999875
No 6
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.1e-22 Score=212.84 Aligned_cols=219 Identities=24% Similarity=0.252 Sum_probs=157.3
Q ss_pred HHHHHHhccchhHHHHhhcCCChhHHHHHH-HHhccCCcc---CCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCc
Q 037423 195 AEERLSEGLQRLEEVFNREGKAVDDLLNIA-KTLRAMPVV---DLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPF 269 (435)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~-~~l~~lp~~---~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~ 269 (435)
..+++..+++.+..+|+.+|.++++|.+.+ ..+...+.. ....++|+++|++|+|||||+|++++... .++++++
T Consensus 165 ~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~g 244 (472)
T PRK03003 165 AAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAG 244 (472)
T ss_pred hHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC
Confidence 345556677777789999999999998743 233221111 13457999999999999999999998764 6788999
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchh--hhHHHHH-HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDED--RNNLEKL-TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKE 346 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~ie~~-~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~ 346 (435)
||++.....+.+++..+.+|||||+.+..... .+.+... +..++.. +|++++|+|++ .+.+.++.. ++..+.+
T Consensus 245 tT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~-ad~vilV~Da~--~~~s~~~~~-~~~~~~~ 320 (472)
T PRK03003 245 TTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEA-AEVAVVLIDAS--EPISEQDQR-VLSMVIE 320 (472)
T ss_pred ccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhc-CCEEEEEEeCC--CCCCHHHHH-HHHHHHH
Confidence 99999888888889999999999986543211 1111111 1223344 59999999998 567788775 5666665
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHH-hhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcccccccCC
Q 037423 347 RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMA-SYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSR 425 (435)
Q Consensus 347 ~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~ 425 (435)
. ++|+|+|+||+|+...... .. ....+. .+......+++++||++|.||+++++.+.+.+..+..+++|+
T Consensus 321 ~--~~piIiV~NK~Dl~~~~~~----~~---~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~ 391 (472)
T PRK03003 321 A--GRALVLAFNKWDLVDEDRR----YY---LEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIPTG 391 (472)
T ss_pred c--CCCEEEEEECcccCChhHH----HH---HHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHH
Confidence 3 7999999999999753210 00 011111 122223468999999999999999999999999999999886
Q ss_pred C
Q 037423 426 S 426 (435)
Q Consensus 426 ~ 426 (435)
.
T Consensus 392 ~ 392 (472)
T PRK03003 392 R 392 (472)
T ss_pred H
Confidence 5
No 7
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=204.31 Aligned_cols=160 Identities=28% Similarity=0.395 Sum_probs=136.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC-chhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR-DEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~-~~~~~~ie~~~~~~l~~ 315 (435)
+.|+++|+||||||||+|+|++.+ ..|+++||+|+|...+...+.+..+.+|||+|+.... ......+..++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 789999999999999999999876 4899999999999999999999999999999998654 33455667777777777
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
. |+++||+|.. +|.+..|.. +.+.++.. ++|+|+|+||+|-.+.+ ....+|...+...+++
T Consensus 84 A-DvilfvVD~~--~Git~~D~~-ia~~Lr~~--~kpviLvvNK~D~~~~e-------------~~~~efyslG~g~~~~ 144 (444)
T COG1160 84 A-DVILFVVDGR--EGITPADEE-IAKILRRS--KKPVILVVNKIDNLKAE-------------ELAYEFYSLGFGEPVP 144 (444)
T ss_pred C-CEEEEEEeCC--CCCCHHHHH-HHHHHHhc--CCCEEEEEEcccCchhh-------------hhHHHHHhcCCCCceE
Confidence 5 9999999976 899999987 67777753 79999999999976432 3345566677778999
Q ss_pred cccCCCCCHHHHHHHHHHHHh
Q 037423 396 VSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+||..|.|+.+|++++.+.+.
T Consensus 145 ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 145 ISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eehhhccCHHHHHHHHHhhcC
Confidence 999999999999999999985
No 8
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=4.4e-22 Score=205.95 Aligned_cols=219 Identities=22% Similarity=0.285 Sum_probs=158.7
Q ss_pred HHHHHHhccchhHHHHhhcCCChhHHHHHHH-HhccCCc---cCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCc
Q 037423 195 AEERLSEGLQRLEEVFNREGKAVDDLLNIAK-TLRAMPV---VDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPF 269 (435)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~-~l~~lp~---~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~ 269 (435)
..+++..+++.+..+++.++.++.++.+... .+..... ......+++++|++|+|||||+|++++.. ..+++.++
T Consensus 126 ~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~g 205 (429)
T TIGR03594 126 AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAG 205 (429)
T ss_pred HHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCC
Confidence 4556777888888999999999999988542 2221110 01234689999999999999999999765 46788999
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH----HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT----LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIK 345 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~----~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~ 345 (435)
||++.....+.+++..+.+|||||+.+..... ..++.+. ..++.. +|++++|+|++ .+.+.++.. ++..+.
T Consensus 206 tt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~-~~~e~~~~~~~~~~~~~-ad~~ilV~D~~--~~~~~~~~~-~~~~~~ 280 (429)
T TIGR03594 206 TTRDSIDIPFERNGKKYLLIDTAGIRRKGKVT-EGVEKYSVLRTLKAIER-ADVVLLVLDAT--EGITEQDLR-IAGLIL 280 (429)
T ss_pred ceECcEeEEEEECCcEEEEEECCCccccccch-hhHHHHHHHHHHHHHHh-CCEEEEEEECC--CCccHHHHH-HHHHHH
Confidence 99999888888888899999999997654321 2233332 233444 49999999998 677887765 556665
Q ss_pred HhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHH-hhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcccccccC
Q 037423 346 ERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMA-SYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKS 424 (435)
Q Consensus 346 ~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t 424 (435)
+. ++|+++|+||+|+..... ...+. ...+. .+......+++++||++|.|++++++++.+.+..+..+++|
T Consensus 281 ~~--~~~iiiv~NK~Dl~~~~~---~~~~~---~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~~i~t 352 (429)
T TIGR03594 281 EA--GKALVIVVNKWDLVKDEK---TREEF---KKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENANRRIST 352 (429)
T ss_pred Hc--CCcEEEEEECcccCCCHH---HHHHH---HHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcCcCCH
Confidence 54 799999999999982210 01111 11111 12222346899999999999999999999999998888887
Q ss_pred CC
Q 037423 425 RS 426 (435)
Q Consensus 425 ~~ 426 (435)
+.
T Consensus 353 ~~ 354 (429)
T TIGR03594 353 SK 354 (429)
T ss_pred HH
Confidence 64
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=3.4e-22 Score=191.03 Aligned_cols=181 Identities=23% Similarity=0.303 Sum_probs=138.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
+..-|+++|+||+|||||+|++.+.+. .+++.|.||+....+.+..++.+++++||||+..........+...+..++.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 345689999999999999999999886 8999999999999999999999999999999988754444445555556665
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.. |+++||+|++. +....+.. +++.++.. +.|+++++||+|........ ..+....... .....++
T Consensus 85 dv-Dlilfvvd~~~--~~~~~d~~-il~~lk~~--~~pvil~iNKID~~~~~~~l---~~~~~~~~~~-----~~f~~iv 150 (298)
T COG1159 85 DV-DLILFVVDADE--GWGPGDEF-ILEQLKKT--KTPVILVVNKIDKVKPKTVL---LKLIAFLKKL-----LPFKEIV 150 (298)
T ss_pred cC-cEEEEEEeccc--cCCccHHH-HHHHHhhc--CCCeEEEEEccccCCcHHHH---HHHHHHHHhh-----CCcceEE
Confidence 55 99999999984 45555554 56667663 68999999999998775210 0111111111 1223799
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcccccccCCCCCcc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMDRIKSRSNEDN 430 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~~~~e 430 (435)
++||++|.|++.|.+.+.+.+++.....+.....+.
T Consensus 151 piSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~ 186 (298)
T COG1159 151 PISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDR 186 (298)
T ss_pred EeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence 999999999999999999999988777776555443
No 10
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=1.7e-21 Score=202.03 Aligned_cols=220 Identities=22% Similarity=0.270 Sum_probs=159.0
Q ss_pred HHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCcc---CCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCc
Q 037423 194 EAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVV---DLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPF 269 (435)
Q Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~---~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~ 269 (435)
...+++..+++.+..+++.++.++.++.+........... .....+|+++|++|+|||||+|++++.. ..+++.++
T Consensus 127 ~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~g 206 (435)
T PRK00093 127 DAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAG 206 (435)
T ss_pred hHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCC
Confidence 3455666677777888999999999988754332111111 2356899999999999999999999765 57888999
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH----HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT----LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIK 345 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~----~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~ 345 (435)
||++.....+.+++..+.+|||||+.+..... ..++.+. ..++.. +|++++|+|++ .+.+.++.. +...+.
T Consensus 207 tt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~-~~~e~~~~~~~~~~~~~-ad~~ilViD~~--~~~~~~~~~-i~~~~~ 281 (435)
T PRK00093 207 TTRDSIDTPFERDGQKYTLIDTAGIRRKGKVT-EGVEKYSVIRTLKAIER-ADVVLLVIDAT--EGITEQDLR-IAGLAL 281 (435)
T ss_pred ceEEEEEEEEEECCeeEEEEECCCCCCCcchh-hHHHHHHHHHHHHHHHH-CCEEEEEEeCC--CCCCHHHHH-HHHHHH
Confidence 99999888888888999999999997654332 2233332 233443 48999999998 667887775 555565
Q ss_pred HhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcccccccCC
Q 037423 346 ERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSR 425 (435)
Q Consensus 346 ~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~ 425 (435)
+. ++|+++|+||+|+.+... ..+...... ..+......+++++||++|.|++++++.+.+.+..+..+++|+
T Consensus 282 ~~--~~~~ivv~NK~Dl~~~~~----~~~~~~~~~--~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~~~i~t~ 353 (435)
T PRK00093 282 EA--GRALVIVVNKWDLVDEKT----MEEFKKELR--RRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENANRRISTS 353 (435)
T ss_pred Hc--CCcEEEEEECccCCCHHH----HHHHHHHHH--HhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHcCcCChH
Confidence 54 799999999999974321 111111111 1122233468999999999999999999999999888888775
Q ss_pred C
Q 037423 426 S 426 (435)
Q Consensus 426 ~ 426 (435)
.
T Consensus 354 ~ 354 (435)
T PRK00093 354 V 354 (435)
T ss_pred H
Confidence 4
No 11
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=2.9e-21 Score=187.99 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=121.7
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.|+++|+||+|||||+|+|++... .+++.|+||++...+....++.++.+|||||+..........+...+..++.. +
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~-a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG-V 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh-C
Confidence 589999999999999999998875 68899999999877777667778999999999765322222222233344444 5
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC-CCcEEEc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG-PDGAIRV 396 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v 396 (435)
|++++|+|++.. .+.. ..++..+... +.|+++|+||+|+..... ... ....+.... ..+++++
T Consensus 81 Dvvl~VvD~~~~--~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-------~~~---~~~~~~~~~~~~~v~~i 144 (270)
T TIGR00436 81 DLILFVVDSDQW--NGDG--EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-------LLP---LIDKYAILEDFKDIVPI 144 (270)
T ss_pred CEEEEEEECCCC--CchH--HHHHHHHHhc--CCCEEEEEECeeCCCHHH-------HHH---HHHHHHhhcCCCceEEE
Confidence 899999999843 3333 3355555553 789999999999974321 111 111222211 2378999
Q ss_pred ccCCCCCHHHHHHHHHHHHhcccccccCCC
Q 037423 397 SVMNEEGLNELKDRVYQMLVGQMDRIKSRS 426 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l~~~~~~~~t~~ 426 (435)
||++|.|+++|++++.+.+.......+...
T Consensus 145 SA~~g~gi~~L~~~l~~~l~~~~~~~~~~~ 174 (270)
T TIGR00436 145 SALTGDNTSFLAAFIEVHLPEGPFRYPEDY 174 (270)
T ss_pred ecCCCCCHHHHHHHHHHhCCCCCCCCCCcc
Confidence 999999999999999999987665555443
No 12
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=1.6e-21 Score=213.23 Aligned_cols=220 Identities=22% Similarity=0.230 Sum_probs=157.5
Q ss_pred HHHHHHhccchhHHHHhhcCCChhHHHHHH-HHhccCCc-c----CCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccC
Q 037423 195 AEERLSEGLQRLEEVFNREGKAVDDLLNIA-KTLRAMPV-V----DLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNY 267 (435)
Q Consensus 195 ~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~-~~l~~lp~-~----~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~ 267 (435)
..+++..+++....+|+.++.++.+|.+.+ ..+..... . ....++|+++|++|+|||||+|++++... .++++
T Consensus 402 ~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~ 481 (712)
T PRK09518 402 AAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDL 481 (712)
T ss_pred HHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCC
Confidence 455666677777789999999999998743 22211100 1 12357999999999999999999998764 67889
Q ss_pred CceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH----HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHH
Q 037423 268 PFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL----TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKE 343 (435)
Q Consensus 268 ~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~----~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~ 343 (435)
++||++.....+.+++..+.+|||||+.+...... ..+.+ +..++.. +|++++|+|++ .+.+.++.. ++..
T Consensus 482 ~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~-~~e~~~~~r~~~~i~~-advvilViDat--~~~s~~~~~-i~~~ 556 (712)
T PRK09518 482 AGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT-GAEYYSSLRTQAAIER-SELALFLFDAS--QPISEQDLK-VMSM 556 (712)
T ss_pred CCCCcCcceeEEEECCCEEEEEECCCcccCcccch-hHHHHHHHHHHHHhhc-CCEEEEEEECC--CCCCHHHHH-HHHH
Confidence 99999998888888999999999999875432211 11222 1223334 58999999998 567788775 5566
Q ss_pred HHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 344 IKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 344 l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
+.+. ++|+++|+||+|+.+.... ....... ...+......+++++||++|.|+++|++.+.+.+..+..+++
T Consensus 557 ~~~~--~~piIiV~NK~DL~~~~~~----~~~~~~~--~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~ 628 (712)
T PRK09518 557 AVDA--GRALVLVFNKWDLMDEFRR----QRLERLW--KTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQRIP 628 (712)
T ss_pred HHHc--CCCEEEEEEchhcCChhHH----HHHHHHH--HHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence 6554 7999999999999754310 0111111 011112234578999999999999999999999999999998
Q ss_pred CCCC
Q 037423 424 SRSN 427 (435)
Q Consensus 424 t~~~ 427 (435)
|+..
T Consensus 629 T~~L 632 (712)
T PRK09518 629 TGKL 632 (712)
T ss_pred hHHH
Confidence 8644
No 13
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=7.3e-21 Score=189.95 Aligned_cols=165 Identities=30% Similarity=0.447 Sum_probs=124.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
..|+++|.||+|||||+|++++.++.++++|+||..+..+.+.+ ++.+++++||||+.+...... .+...+++|.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~----gLg~~flrhi 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGA----GLGHRFLKHI 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccc----cHHHHHHHHh
Confidence 45999999999999999999998888999999999999999988 557899999999987554321 1233334432
Q ss_pred --CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 317 --PTAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 317 --~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
++++++|+|+++.. +.++...|..++.... .++|+++|+||+|+....... . .....+......
T Consensus 235 e~a~vlI~ViD~s~~~--s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~-------~--~~~~~~~~~~~~ 303 (335)
T PRK12299 235 ERTRLLLHLVDIEAVD--PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEER-------E--KRAALELAALGG 303 (335)
T ss_pred hhcCEEEEEEcCCCCC--CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHH-------H--HHHHHHHHhcCC
Confidence 48999999998543 5777777888887642 368999999999997543110 0 011111122235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++++||++++|++++++++.+.+..
T Consensus 304 ~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 304 PVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999998865
No 14
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=188.27 Aligned_cols=159 Identities=25% Similarity=0.355 Sum_probs=124.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHH---
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTL--- 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~--- 310 (435)
..+.+++++|.||||||||+|+|++.+ ..|++.||||+|....++..+|..+.++||+|+++.. +.+|+..+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~iGIeRs 290 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERIGIERA 290 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHHHHHHH
Confidence 478999999999999999999999764 6999999999999999999999999999999998754 34555543
Q ss_pred -HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 311 -AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 311 -~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
..+.. +|.|+||+|++. +.+.++.. ++. . ...++|+++|.||+||....... .. .. ..
T Consensus 291 ~~~i~~-ADlvL~v~D~~~--~~~~~d~~-~~~-~--~~~~~~~i~v~NK~DL~~~~~~~-----------~~-~~--~~ 349 (454)
T COG0486 291 KKAIEE-ADLVLFVLDASQ--PLDKEDLA-LIE-L--LPKKKPIIVVLNKADLVSKIELE-----------SE-KL--AN 349 (454)
T ss_pred HHHHHh-CCEEEEEEeCCC--CCchhhHH-HHH-h--cccCCCEEEEEechhcccccccc-----------hh-hc--cC
Confidence 34444 499999999984 34555554 344 1 22479999999999999765211 00 11 11
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
..+++.+||++|+|++.|.++|.+.+...
T Consensus 350 ~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 GDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 23689999999999999999999988765
No 15
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.85 E-value=3.7e-20 Score=186.22 Aligned_cols=160 Identities=26% Similarity=0.283 Sum_probs=115.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCC-CchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQR-RDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~-~~~~~~~ie~~~~~~l 313 (435)
..++|+++|+||+|||||+|++++..+.+.+.+|+|.++....+.+ ++..+.+|||||+... +....+.+ ..+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHH
Confidence 5589999999999999999999998888889999999999988888 5689999999998543 32211222 1223333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|+++. .+.++...|...+.... .++|+++|+||+|+..... . ... .. ...+
T Consensus 267 ~~-ADlil~VvD~s~~--~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-------v----~~~---~~-~~~~ 328 (351)
T TIGR03156 267 RE-ADLLLHVVDASDP--DREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-------I----ERL---EE-GYPE 328 (351)
T ss_pred Hh-CCEEEEEEECCCC--chHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-------H----HHH---Hh-CCCC
Confidence 34 4899999999843 44444433444444432 3689999999999975321 0 011 11 1236
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
++++||++|.|+++|+++|.+.
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHhh
Confidence 8999999999999999998764
No 16
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=3.2e-20 Score=166.65 Aligned_cols=163 Identities=30% Similarity=0.433 Sum_probs=116.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.|+++|++|+|||||+|++.+....++..+++|.+...+.+.+++. .+.+|||||+.+.....++ +.......+.. +
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~~~~~~-~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG-LGHRFLRHIER-T 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-chHHHHHHHHh-C
Confidence 4899999999999999999988777888889998888888777776 8999999998643222111 11112222332 4
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCcE
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDGA 393 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (435)
|++++|+|++... .+.++...|.+.+.... .++|+++|+||+|+.+..... .....+... ...++
T Consensus 80 d~vi~v~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----------~~~~~~~~~~~~~~~ 148 (170)
T cd01898 80 RLLLHVIDLSGDD-DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELF----------ELLKELLKELWGKPV 148 (170)
T ss_pred CEEEEEEecCCCC-CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhH----------HHHHHHHhhCCCCCE
Confidence 8999999998421 34566666777776542 368999999999997654211 111112222 24579
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~ 414 (435)
+++||+++.|++++++++.+.
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999999875
No 17
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=4.9e-20 Score=184.82 Aligned_cols=175 Identities=18% Similarity=0.237 Sum_probs=124.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
+..+|+++|++|||||||+|+|.+..+ .+++.++||++...+.+..++.++.+|||||+.+........+...+..++.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 445899999999999999999998775 5678889999988888888889999999999965432222222233333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-c-CCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK-M-GPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 392 (435)
. +|++++|+|++ .++...+. .++..+... +.|.++|+||+|+.+.. .. ....+.. . ...+
T Consensus 131 ~-aDvil~VvD~~--~s~~~~~~-~il~~l~~~--~~p~IlViNKiDl~~~~-----~~-------~~~~~l~~~~~~~~ 192 (339)
T PRK15494 131 S-ADLVLLIIDSL--KSFDDITH-NILDKLRSL--NIVPIFLLNKIDIESKY-----LN-------DIKAFLTENHPDSL 192 (339)
T ss_pred h-CCEEEEEEECC--CCCCHHHH-HHHHHHHhc--CCCEEEEEEhhcCcccc-----HH-------HHHHHHHhcCCCcE
Confidence 3 58999999977 34444433 366666654 57888999999986421 11 1111111 1 1247
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcccccccCCCCC
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSRSNE 428 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~~~ 428 (435)
++++||++|.|++++++++.+.+.....-.+.....
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~t 228 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKISPWLYAEDDIT 228 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 899999999999999999999998876665555443
No 18
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=4.1e-20 Score=191.56 Aligned_cols=172 Identities=26% Similarity=0.355 Sum_probs=124.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC-
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL- 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~- 316 (435)
..|+++|.||+|||||+|+|++.++.++++|+||+++..+.+.+++.+++++||||+.+...... .+...++.|.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~----gLg~~fLrhie 235 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK----GLGLDFLRHIE 235 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh----HHHHHHHHHHH
Confidence 46999999999999999999999888999999999999999999899999999999976543321 2223333332
Q ss_pred -CcEEEEEEeCCCCC--CCCHHHHHHHHHHHHHh------------cCCCcEEEEEeccCCCCCCCccccchhhhHHHHH
Q 037423 317 -PTAILFVHDLSGEC--GTSPSDQFTIYKEIKER------------FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLE 381 (435)
Q Consensus 317 -~d~il~ViD~s~~~--g~s~~~~~~l~~~l~~~------------~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~ 381 (435)
++++++|+|++... .....+...+..++..+ ..++|+|+|+||+|+.+.... ...
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-------~e~--- 305 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-------AEF--- 305 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-------HHH---
Confidence 48999999997421 11233444344455432 236899999999999644311 111
Q ss_pred HHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 382 MASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 382 ~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
........+.+++++||++++|+++|+.++.+.+.....+.+
T Consensus 306 l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~~~ 347 (500)
T PRK12296 306 VRPELEARGWPVFEVSAASREGLRELSFALAELVEEARAAEP 347 (500)
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhcccC
Confidence 111111123589999999999999999999999987765543
No 19
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.85 E-value=8.2e-20 Score=169.93 Aligned_cols=162 Identities=27% Similarity=0.293 Sum_probs=113.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-eEEEEeCCCCCCCCchhhhHHHHH--HHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQRRDEDRNNLEKL--TLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~ie~~--~~~ 311 (435)
+..++|+++|++|||||||+|++++....+.+.+++|.+.....+.+++. .+.+|||||+.+..... ..+.+ ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--~~~~~~~~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQ--LVEAFRSTLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHH--HHHHHHHHHH
Confidence 45689999999999999999999988766667778888877777777664 89999999986543221 11211 112
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.+. ..|++++|+|++. +.+..+...+...+.... .+.|+++|+||+|+...... . .......
T Consensus 117 ~~~-~~d~ii~v~D~~~--~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----------~---~~~~~~~ 179 (204)
T cd01878 117 EVA-EADLLLHVVDASD--PDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----------E---ERLEAGR 179 (204)
T ss_pred HHh-cCCeEEEEEECCC--CChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----------H---HHhhcCC
Confidence 222 3489999999984 344444433444444432 36899999999999764311 0 1122334
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.+++++||++|.|+++++++|...+
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999998653
No 20
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.84 E-value=1.2e-19 Score=168.74 Aligned_cols=170 Identities=16% Similarity=0.116 Sum_probs=115.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||++++.+..+.....|.++.+.....+.+++ ..+.+|||||..........++......++..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~- 80 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN- 80 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc-
Confidence 689999999999999999998776444444444454444455566 46789999998654322222222222333433
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh-hcCCC
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR-KMGPD 391 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 391 (435)
+|++++|+|+++ +.+++....|.+.+.... .+.|+++|+||+|+....... ......+. .....
T Consensus 81 ad~iilv~D~~~--~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 149 (198)
T cd04142 81 SRAFILVYDICS--PDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP---------RHVLSVLVRKSWKC 149 (198)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc---------HHHHHHHHHHhcCC
Confidence 599999999984 456676666777776542 468999999999996543111 01112221 12346
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+++++||++|.||+++|+.+.+.+..+..
T Consensus 150 ~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 150 GYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 89999999999999999999987765543
No 21
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.1e-19 Score=185.92 Aligned_cols=164 Identities=32% Similarity=0.419 Sum_probs=122.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC-
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL- 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~- 316 (435)
.|+++|.||+|||||+|++++.++.++++|+||..+..+.+.++ +.+++++||||+........ .+...++.|.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~----gLg~~fLrhie 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV----GLGHQFLRHIE 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc----hHHHHHHHHHh
Confidence 69999999999999999999999889999999999999988887 68899999999976543321 2333344442
Q ss_pred -CcEEEEEEeCCCCCC-CCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 317 -PTAILFVHDLSGECG-TSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 317 -~d~il~ViD~s~~~g-~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
++++++|+|+++..+ .+.++...|..++.... .++|+++|+||+|+.... + ....+... ...
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~-------e---~l~~l~~~---l~~ 302 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE-------E---NLEEFKEK---LGP 302 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH-------H---HHHHHHHH---hCC
Confidence 489999999985322 34455556777776642 368999999999984321 1 11111111 124
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++++||++++|+++|++++.+.+....
T Consensus 303 ~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 303 KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 7999999999999999999999886653
No 22
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.84 E-value=8.8e-20 Score=181.97 Aligned_cols=166 Identities=29% Similarity=0.429 Sum_probs=120.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
..|+++|.||+|||||++++++.++.++++|+||..+..+.+.+++ .+++++||||+.+....... +.......+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g-Lg~~flrhier- 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG-LGHRFLKHIER- 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc-HHHHHHHHHHh-
Confidence 4599999999999999999999888899999999999999998877 89999999999765433211 11222222322
Q ss_pred CcEEEEEEeCCCCCC-CCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 317 PTAILFVHDLSGECG-TSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 317 ~d~il~ViD~s~~~g-~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
++++++|+|++..+. .+.++...|.+++.... .++|+++|+||+|+..... ... ....+.+....+
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-------~~~---~~~~l~~~~~~~ 305 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-------LAE---LLKELKKALGKP 305 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-------HHH---HHHHHHHHcCCc
Confidence 488999999985322 34455556666665542 4689999999999975421 111 111122222357
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++++||++++|++++++++.+.+
T Consensus 306 vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 306 VFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEEEccCCcCHHHHHHHHHHHh
Confidence 99999999999999999998865
No 23
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.84 E-value=2.7e-19 Score=165.11 Aligned_cols=167 Identities=19% Similarity=0.095 Sum_probs=119.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|..|||||||+.++....+.....+..+.+.....+..++ ..+.+|||||.... ..+...++
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~--------~~l~~~~~- 76 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF--------CTIFRSYS- 76 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHHHHHh-
Confidence 46899999999999999999997655322222233444444455555 56789999998532 22333333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..++++++|+|+++ ..++++...|+.++....++.|+|+|+||+|+....... ......++...+.+++
T Consensus 77 ~~ad~illVfD~t~--~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~---------~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 77 RGAQGIILVYDITN--RWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA---------TEQAQAYAERNGMTFF 145 (189)
T ss_pred cCCCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC---------HHHHHHHHHHcCCEEE
Confidence 34599999999994 567888888999998877789999999999997543221 1123334444456899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
++||++|.||+++|+++.+.+.....+.+
T Consensus 146 e~SAk~g~~V~~~F~~l~~~i~~~~~~~~ 174 (189)
T cd04121 146 EVSPLCNFNITESFTELARIVLMRHGRPP 174 (189)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999987765544433
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.5e-19 Score=183.85 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=122.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.|+++|.||+|||||+|+|++.++.++++|+||+....+.+.+++ ..++++||||+.+....... +.......+.. +
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~-Lg~~~l~~i~r-a 238 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAG-LGIRFLKHLER-C 238 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhh-HHHHHHHHHHh-C
Confidence 499999999999999999999989999999999999999998875 56999999999875433211 11222233443 3
Q ss_pred cEEEEEEeCCCCC-CCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 318 TAILFVHDLSGEC-GTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 318 d~il~ViD~s~~~-g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+++++|+|++..+ ....++...|++++.... .++|+++|+||+|+..... .......+.... ....++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-------l~~~l~~l~~~~-~~~~~V 310 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-------AEERAKAIVEAL-GWEGPV 310 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-------HHHHHHHHHHHh-CCCCCE
Confidence 8899999987321 123344455667666542 3689999999999875431 111111111111 011368
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+++||+++.|+++|++.|.+.+.....
T Consensus 311 i~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 311 YLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred EEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 999999999999999999999876544
No 25
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.83 E-value=3.5e-19 Score=159.71 Aligned_cols=159 Identities=20% Similarity=0.141 Sum_probs=113.0
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|++|||||||++++.+..+.....+..+.+.....+..++ ..+.+|||||.... .......+ +
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~-~ 73 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF--------RTITSSYY-R 73 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH--------HHHHHHHh-C
Confidence 5799999999999999999998776544444444455545555554 46799999996432 12222333 4
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.++++++|+|+++ ..++.....|+..+.... .+.|+++|+||+|+....... ......+....+.+++
T Consensus 74 ~~~~ii~v~d~~~--~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~ 142 (166)
T cd01869 74 GAHGIIIVYDVTD--QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD---------YSEAQEFADELGIPFL 142 (166)
T ss_pred cCCEEEEEEECcC--HHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC---------HHHHHHHHHHcCCeEE
Confidence 4599999999984 346777777888887654 468999999999987543221 0112222333346899
Q ss_pred EcccCCCCCHHHHHHHHHHHHh
Q 037423 395 RVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++||++|.|++++++.+.+.+.
T Consensus 143 ~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 143 ETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred EEECCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 26
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.83 E-value=3.6e-19 Score=158.39 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=113.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|++|+|||||++++.+........+.++.+.....+.+++ ..+.+|||||.... .......+.+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~~- 72 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF--------RSLIPSYIRD- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhcc-
Confidence 699999999999999999998887767777788887777777766 45899999996431 2223333444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
++++++|+|+++ +.++++...|+..+..... +.|+++|+||+|+....... . ..........+.++++
T Consensus 73 ~~~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~------~---~~~~~~~~~~~~~~~~ 141 (161)
T cd01861 73 SSVAVVVYDITN--RQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVS------T---EEGEKKAKELNAMFIE 141 (161)
T ss_pred CCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccC------H---HHHHHHHHHhCCEEEE
Confidence 489999999984 3456776778887766542 58999999999996432111 0 1111122222467999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~ 414 (435)
+||++|.|++++++++.+.
T Consensus 142 ~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 142 TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EeCCCCCCHHHHHHHHHHh
Confidence 9999999999999999875
No 27
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3e-19 Score=186.90 Aligned_cols=163 Identities=23% Similarity=0.316 Sum_probs=120.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..++|+++|.+|||||||+|++++.. ..+.+.+++|++.......+++..+.+|||||+..........+..++..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 45789999999999999999999875 46788999999999888888899999999999864322222234444455555
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
. +|++++|+|++ .+.+..+.. +...+... ++|+++|+||+|+..... + .. .+...+...++
T Consensus 117 ~-aD~il~VvD~~--~~~s~~~~~-i~~~l~~~--~~piilV~NK~Dl~~~~~------~----~~---~~~~~g~~~~~ 177 (472)
T PRK03003 117 T-ADAVLFVVDAT--VGATATDEA-VARVLRRS--GKPVILAANKVDDERGEA------D----AA---ALWSLGLGEPH 177 (472)
T ss_pred h-CCEEEEEEECC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECccCCccch------h----hH---HHHhcCCCCeE
Confidence 5 49999999998 455555543 56666553 799999999999864320 0 01 11112222467
Q ss_pred EcccCCCCCHHHHHHHHHHHHhc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++||++|.|++++++++.+.+..
T Consensus 178 ~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 178 PVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEcCCCCCcHHHHHHHHhhccc
Confidence 99999999999999999988755
No 28
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.82 E-value=6.1e-19 Score=157.92 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=108.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||++++....+.....+....+........++ ..+.+|||||.... ......++.+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~- 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF--------QTMHASYYHK- 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh--------hhhhHHHhCC-
Confidence 689999999999999999987765332222222223222333343 46789999997532 1223334444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
+|++++|+|++. +.+.++...|+..+....++.|+++|+||+|+.... . .....+......+++++
T Consensus 73 ~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~---------~---~~~~~~~~~~~~~~~~~ 138 (161)
T cd04124 73 AHACILVFDVTR--KITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV---------T---QKKFNFAEKHNLPLYYV 138 (161)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH---------H---HHHHHHHHHcCCeEEEE
Confidence 489999999984 456677777888888766679999999999984321 0 11112222234689999
Q ss_pred ccCCCCCHHHHHHHHHHHHhcc
Q 037423 397 SVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l~~~ 418 (435)
||++|.|++++++.+.+.+.++
T Consensus 139 Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 139 SAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred eCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999876553
No 29
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=3.7e-19 Score=156.96 Aligned_cols=155 Identities=26% Similarity=0.392 Sum_probs=110.4
Q ss_pred EEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 241 CLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 241 ~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
+++|.+|+|||||++++++... .++..+++|.+.......+++..+.+|||||+.+........+.......+.. .|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~-~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEE-ADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh-CCE
Confidence 4799999999999999998753 46678889988888888888889999999999765431112222223333444 489
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccC
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVM 399 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~ 399 (435)
+++|+|++ .+.+..+.. +...+... +.|+++|+||+|+...... ...+......+++++||+
T Consensus 80 ii~v~d~~--~~~~~~~~~-~~~~~~~~--~~piiiv~nK~D~~~~~~~-------------~~~~~~~~~~~~~~~Sa~ 141 (157)
T cd01894 80 ILFVVDGR--EGLTPADEE-IAKYLRKS--KKPVILVVNKVDNIKEEDE-------------AAEFYSLGFGEPIPISAE 141 (157)
T ss_pred EEEEEecc--ccCCccHHH-HHHHHHhc--CCCEEEEEECcccCChHHH-------------HHHHHhcCCCCeEEEecc
Confidence 99999987 344444433 44555554 6999999999999764311 111112222378999999
Q ss_pred CCCCHHHHHHHHHHH
Q 037423 400 NEEGLNELKDRVYQM 414 (435)
Q Consensus 400 ~g~GI~eL~~~i~~~ 414 (435)
+|.|++++++++.+.
T Consensus 142 ~~~gv~~l~~~l~~~ 156 (157)
T cd01894 142 HGRGIGDLLDAILEL 156 (157)
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999999875
No 30
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.82 E-value=6.6e-19 Score=157.63 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=113.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++.+..+.....|..+.+.....+..++ ..+.+|||||... +.......+.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 74 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQER--------YRAITSAYYR 74 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHH--------HHHHHHHHHC
Confidence 35899999999999999999998876555556555555555666655 4678999999743 1222333343
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.++++++|+|+++ ..+.++...|+..+..... +.|+++|+||+|+....... . .....+......++
T Consensus 75 -~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~------~---~~~~~~~~~~~~~~ 142 (165)
T cd01868 75 -GAVGALLVYDITK--KQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP------T---EEAKAFAEKNGLSF 142 (165)
T ss_pred -CCCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC------H---HHHHHHHHHcCCEE
Confidence 3588999999984 4567777778888877643 48999999999987543211 0 11112222234679
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|++++++++.+.+
T Consensus 143 ~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 143 IETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 31
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=6.4e-19 Score=173.32 Aligned_cols=173 Identities=23% Similarity=0.314 Sum_probs=121.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...|+++|+||+|||||+|++++.+. .+++.+.||++...+....++.++.++||||+.+........+...+...+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~ 84 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKD 84 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhc
Confidence 45699999999999999999998875 67888889988877776666689999999999765432222223333344444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-cCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK-MGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 394 (435)
+|++++|+|++. +.+..+. .++..+... +.|+++|+||+|+..... ..... ...+.. ....+++
T Consensus 85 -~D~il~vvd~~~--~~~~~~~-~i~~~l~~~--~~pvilVlNKiDl~~~~~------~l~~~---~~~l~~~~~~~~i~ 149 (292)
T PRK00089 85 -VDLVLFVVDADE--KIGPGDE-FILEKLKKV--KTPVILVLNKIDLVKDKE------ELLPL---LEELSELMDFAEIV 149 (292)
T ss_pred -CCEEEEEEeCCC--CCChhHH-HHHHHHhhc--CCCEEEEEECCcCCCCHH------HHHHH---HHHHHhhCCCCeEE
Confidence 489999999984 3443333 245555542 689999999999974321 11111 112222 1235799
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcccccccC
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMDRIKS 424 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t 424 (435)
++||++|.|++++++++.+.+.......+.
T Consensus 150 ~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~ 179 (292)
T PRK00089 150 PISALKGDNVDELLDVIAKYLPEGPPYYPE 179 (292)
T ss_pred EecCCCCCCHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999998765544443
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=4.1e-19 Score=183.85 Aligned_cols=160 Identities=26% Similarity=0.372 Sum_probs=123.9
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
+|+++|++|||||||+|++++... .+++++++|++.......+++..+.+|||||+........+.+..++..++...
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a- 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA- 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC-
Confidence 489999999999999999998764 688899999999999999999999999999986543322344555555566554
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
|++++|+|++ .+.+..+.. +...+.+. ++|+++|+||+|+...... ..++...+..+++++|
T Consensus 80 d~vl~vvD~~--~~~~~~d~~-i~~~l~~~--~~piilVvNK~D~~~~~~~-------------~~~~~~lg~~~~~~vS 141 (429)
T TIGR03594 80 DVILFVVDGR--EGLTPEDEE-IAKWLRKS--GKPVILVANKIDGKKEDAV-------------AAEFYSLGFGEPIPIS 141 (429)
T ss_pred CEEEEEEeCC--CCCCHHHHH-HHHHHHHh--CCCEEEEEECccCCccccc-------------HHHHHhcCCCCeEEEe
Confidence 8999999988 567777654 56666664 7999999999998754311 1112233334799999
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 037423 398 VMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 398 A~~g~GI~eL~~~i~~~l~~ 417 (435)
|++|.|++++++++.+.+..
T Consensus 142 a~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred CCcCCChHHHHHHHHHhcCc
Confidence 99999999999999988754
No 33
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.82 E-value=8e-19 Score=156.47 Aligned_cols=158 Identities=18% Similarity=0.128 Sum_probs=110.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+++++|.+|+|||||++++++..+ +..+++|+.+.......+++ ..+.+|||||..+.. .+....+.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~ 72 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS--------AMREQYMR 72 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh--------HHHHHHHh
Confidence 35899999999999999999987654 34555565554444445555 467899999975432 22333343
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .+++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 73 ~-~~~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 140 (164)
T cd04145 73 T-GEGFLLVFSVTD--RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS---------REEGQELARKLKIP 140 (164)
T ss_pred h-CCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec---------HHHHHHHHHHcCCc
Confidence 4 489999999984 345666666777776542 468999999999997543211 01112222223458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++++||++|.|++++++++.+.+
T Consensus 141 ~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 141 YIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999999998765
No 34
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.82 E-value=9.9e-19 Score=162.99 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=113.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
.|+++|..|||||||++++....+.....+..+.+.....+.+++ ..+++|||+|.... ..+...++..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~--------~~l~~~y~~~- 72 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSITSAYYRS- 72 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh--------HHHHHHHhcC-
Confidence 489999999999999999998776433333334455555666666 66799999998532 2233334444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCcEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDGAI 394 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 394 (435)
++++++|+|+++ ..++++...|+..+.... .+.|+++|+||+|+........ .....++.. .+..++
T Consensus 73 ad~iIlVfDvtd--~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~---------~~~~~~a~~~~~~~~~ 141 (202)
T cd04120 73 AKGIILVYDITK--KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISR---------QQGEKFAQQITGMRFC 141 (202)
T ss_pred CCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCH---------HHHHHHHHhcCCCEEE
Confidence 599999999994 467788778888877653 4689999999999975432211 111222222 235799
Q ss_pred EcccCCCCCHHHHHHHHHHHHhc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++||++|.||+++|+++.+.+..
T Consensus 142 etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 142 EASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred EecCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987754
No 35
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.82 E-value=1.1e-18 Score=156.67 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=108.6
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|+|||||++++.+..+.....+..+.+.....+..++ ..+.+|||||..+. .......+ .
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~--------~~~~~~~~-~ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY--------RTITTAYY-R 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHc-c
Confidence 4799999999999999999998776433333322233222333333 56899999997432 22233333 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..+++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.+++
T Consensus 73 ~~~~~l~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~~ 141 (165)
T cd01865 73 GAMGFILMYDITN--EESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSS---------ERGRQLADQLGFEFF 141 (165)
T ss_pred CCcEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCH---------HHHHHHHHHcCCEEE
Confidence 4589999999984 356677777888887654 3689999999999975432110 111122222345799
Q ss_pred EcccCCCCCHHHHHHHHHHHHh
Q 037423 395 RVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++||++|.|++++++++.+.+.
T Consensus 142 ~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 142 EASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 36
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=8.7e-19 Score=162.90 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=110.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+|+++|.+|+|||||++++.+..+.....|....+.....+.++ ...+.+|||||.... ..+...++.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~~ 72 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF--------GGMTRVYYR 72 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh--------hhhHHHHhC
Confidence 379999999999999999999876543333333334444445554 356789999998432 122333344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
.++++++|+|++. ..+++....|+..+.... .+.|+++|+||+|+.+..... ......+....
T Consensus 73 -~a~~~ilv~D~t~--~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~---------~~~~~~~~~~~ 140 (201)
T cd04107 73 -GAVGAIIVFDVTR--PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKD---------GEQMDQFCKEN 140 (201)
T ss_pred -CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccC---------HHHHHHHHHHc
Confidence 4589999999984 456777777777776532 467999999999997422111 11222333322
Q ss_pred C-CcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 390 P-DGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 390 ~-~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+ .+++++||++|.||+++++++.+.+....
T Consensus 141 ~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 141 GFIGWFETSAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 3 57999999999999999999999876543
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=1.1e-18 Score=156.92 Aligned_cols=160 Identities=21% Similarity=0.143 Sum_probs=111.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++.+..+.....+..+.+.....+..++ ..+.+|||||.... .......+.
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~--------~~~~~~~~~ 74 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF--------RTITTAYYR 74 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHH--------HHHHHHHhC
Confidence 46899999999999999999998776443333333333333444444 46799999996432 222333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+ +|++++|+|+++ +.++.+...|+..+.... .+.|+++|+||+|+.+..... . .....+......++
T Consensus 75 ~-ad~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~------~---~~~~~~~~~~~~~~ 142 (167)
T cd01867 75 G-AMGIILVYDITD--EKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS------K---EEGEALADEYGIKF 142 (167)
T ss_pred C-CCEEEEEEECcC--HHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC------H---HHHHHHHHHcCCEE
Confidence 4 599999999984 456777777888887653 368999999999997543211 0 11112222234589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|++++++++.+.+.
T Consensus 143 ~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 143 LETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.81 E-value=7e-19 Score=156.68 Aligned_cols=157 Identities=18% Similarity=0.129 Sum_probs=108.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|+|||||++++....+. ..++.|+.+.....+..++ ..+.+|||||..+.. .....++.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~- 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT--------AMRDLYIK- 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCchhhhEEEEEEECCEEEEEEEEECCCccccc--------hHHHHHhh-
Confidence 57999999999999999999976653 3445555555555555555 456789999985432 12222333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.++++++|+|+++ ..++++...|+..+.... .+.|+++|+||+|+........ .....+......++
T Consensus 72 ~~~~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 140 (163)
T cd04136 72 NGQGFVLVYSITS--QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSR---------EEGQALARQWGCPF 140 (163)
T ss_pred cCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecH---------HHHHHHHHHcCCeE
Confidence 3589999999984 355667767777776542 4689999999999975432110 11111222223689
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|++++++++.+.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 141 YETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 39
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=1.4e-18 Score=163.43 Aligned_cols=161 Identities=18% Similarity=0.153 Sum_probs=113.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC---ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY---QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+|+++|.+|||||||++++.+..+.....|..+.+.....+.+++ ..+.+|||||.... ..+...++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~--------~~l~~~~~- 71 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG--------GKMLDKYI- 71 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH--------HHHHHHHh-
Confidence 3699999999999999999998776544444455566555666543 57899999996432 12222333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC----CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS----DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~----~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+.+|++++|+|+++ ..++++...|+..+.+... +.|+++|+||+|+....... ......+....+
T Consensus 72 ~~ad~iilV~D~t~--~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~---------~~~~~~~~~~~~ 140 (215)
T cd04109 72 YGAHAVFLVYDVTN--SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK---------DDKHARFAQANG 140 (215)
T ss_pred hcCCEEEEEEECCC--HHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC---------HHHHHHHHHHcC
Confidence 34599999999984 3567777778888877542 35799999999997543211 011222333334
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+++++||++|+|++++++++.+.+...
T Consensus 141 ~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 141 MESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5799999999999999999999987653
No 40
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=1.1e-18 Score=158.66 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=110.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC------------CceEEEEeCCCCCCCCchhhhH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG------------YQNFQITDTPGLLQRRDEDRNN 304 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~~ 304 (435)
..+++++|.+|||||||++++....+.....+..+.+.....+.+. ...+.+|||||...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER-------- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH--------
Confidence 3679999999999999999998876643333322233333333332 25689999999642
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHH
Q 037423 305 LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM 382 (435)
Q Consensus 305 ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 382 (435)
+.......+.+ ++++++|+|+++ ..++.+...|+..+.... .+.|+++|+||+|+.+...... ...
T Consensus 76 ~~~~~~~~~~~-~~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~---------~~~ 143 (180)
T cd04127 76 FRSLTTAFFRD-AMGFLLIFDLTN--EQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSE---------EQA 143 (180)
T ss_pred HHHHHHHHhCC-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCH---------HHH
Confidence 22233344444 489999999984 467777778888887642 4678999999999976432210 112
Q ss_pred HhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 383 ASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 383 ~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
..+....+.+++++||++|.|++++++++.+.+.
T Consensus 144 ~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 144 KALADKYGIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2333333468999999999999999999998664
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.81 E-value=1.3e-18 Score=155.15 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=107.5
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|++|||||||++++++..+.....+..+.+.....+..++ ..+.+|||||.... .......+ ..
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~-~~ 72 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY--------LEVRNEFY-KD 72 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHH--------HHHHHHHh-cc
Confidence 699999999999999999998776443333333333333444433 56789999998421 12222233 34
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc------CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF------SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~------~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
++++++|+|++++ .+.+....|+..+.... .+.|+++|+||+|+....... ......+....+
T Consensus 73 ~d~~ilv~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~ 141 (168)
T cd04119 73 TQGVLLVYDVTDR--QSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS---------EDEGRLWAESKG 141 (168)
T ss_pred CCEEEEEEECCCH--HHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC---------HHHHHHHHHHcC
Confidence 5899999999843 45666777888887654 258999999999997432111 011112222233
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.+++++||++|.|+++++++|.+.+.
T Consensus 142 ~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 142 FKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67999999999999999999988653
No 42
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=7.9e-19 Score=157.71 Aligned_cols=168 Identities=18% Similarity=0.113 Sum_probs=129.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++|+++|..|||||.|+.++..+.+.-+.....-.|+....+++++ .+++||||+|+.+. ......++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERF--------rtit~syY 79 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERF--------RTITSSYY 79 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHH--------hhhhHhhc
Confidence 457999999999999999999998877544444444667777777766 46899999999543 22334444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+ .+++||+|+|++ +..|+.....|+.++.+.. .+.|.++|+||+|+.+...+.. .....+....+.+
T Consensus 80 R-~ahGii~vyDiT--~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~---------~~a~~fa~~~~~~ 147 (205)
T KOG0084|consen 80 R-GAHGIIFVYDIT--KQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVST---------EEAQEFADELGIP 147 (205)
T ss_pred c-CCCeEEEEEEcc--cHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCH---------HHHHHHHHhcCCc
Confidence 4 459999999999 5678899989999999876 4569999999999987653321 2234555555667
Q ss_pred -EEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 393 -AIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 393 -~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
++++||+++.||++.|..+...+........
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~ 179 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKELKQRKGLHV 179 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHHHHhcccCC
Confidence 9999999999999999999998877655443
No 43
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=9.2e-19 Score=161.30 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=110.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||++++....+. ..+++|+.+.......+++. .+.+|||||..+.. .....++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~- 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT--------ALRDQWIRE- 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHHHHh-
Confidence 4899999999999999999876653 23445554444444445554 47899999974321 222233444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+|++++|+|+++ ..++++...|+..+.... .+.|+++|+||+|+........ .....+....+.+
T Consensus 71 ad~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~---------~~~~~~~~~~~~~ 139 (190)
T cd04144 71 GEGFILVYSITS--RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVST---------EEGAALARRLGCE 139 (190)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCH---------HHHHHHHHHhCCE
Confidence 489999999984 456677777877776542 3689999999999975432210 1112222223457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++++||++|.|++++++++.+.+.....
T Consensus 140 ~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 140 FIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998765443
No 44
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=5.7e-19 Score=156.27 Aligned_cols=155 Identities=23% Similarity=0.330 Sum_probs=111.0
Q ss_pred EecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-cCCcEE
Q 037423 242 LVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-HLPTAI 320 (435)
Q Consensus 242 ~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~~~d~i 320 (435)
++|++|+|||||++++++....++.++++|.+.....+.+++..+.+|||||+.+......+ ..+...++. ...+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh--HHHHHHHhcCCCCcEE
Confidence 58999999999999999887777888999999888888888889999999998654322111 112223332 346899
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCC
Q 037423 321 LFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMN 400 (435)
Q Consensus 321 l~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~ 400 (435)
++|+|++.. ... ..+...+... ++|+++|+||+|+.+...... . ...+....+.+++++||.+
T Consensus 79 i~v~d~~~~----~~~-~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~-------~---~~~~~~~~~~~~~~iSa~~ 141 (158)
T cd01879 79 VNVVDATNL----ERN-LYLTLQLLEL--GLPVVVALNMIDEAEKRGIKI-------D---LDKLSELLGVPVVPTSARK 141 (158)
T ss_pred EEEeeCCcc----hhH-HHHHHHHHHc--CCCEEEEEehhhhcccccchh-------h---HHHHHHhhCCCeEEEEccC
Confidence 999998842 112 2345555553 799999999999976532111 1 1122222245899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 037423 401 EEGLNELKDRVYQML 415 (435)
Q Consensus 401 g~GI~eL~~~i~~~l 415 (435)
|.|++++++++.+..
T Consensus 142 ~~~~~~l~~~l~~~~ 156 (158)
T cd01879 142 GEGIDELKDAIAELA 156 (158)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998864
No 45
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.81 E-value=1.3e-18 Score=154.91 Aligned_cols=156 Identities=21% Similarity=0.163 Sum_probs=108.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC----CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG----YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
+|+++|.+|+|||||++++.+..+.....+....+.....+.++ ...+++|||||..+ .......++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~ 73 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE--------FDAITKAYYR 73 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH--------HHHhHHHHhc
Confidence 69999999999999999999876543333333344433444443 35789999999632 2223334443
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.++++++|+|+++ ..+++....|+..+.....+.|+++|+||+|+........ .....+....+.+++
T Consensus 74 -~~~~~v~v~d~~~--~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~ 141 (162)
T cd04106 74 -GAQACILVFSTTD--RESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITN---------EEAEALAKRLQLPLF 141 (162)
T ss_pred -CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCH---------HHHHHHHHHcCCeEE
Confidence 4589999999984 3466777778888877667899999999999976432210 112222333345899
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 037423 395 RVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~ 414 (435)
++||++|.|++++++++.+.
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998753
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=1.7e-18 Score=159.66 Aligned_cols=162 Identities=20% Similarity=0.124 Sum_probs=112.5
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceee-eeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTR-GILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+|+++|.+|+|||||++++.+..+....+..|+. +.....+.+++ ..+.||||||... +.......+.
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~- 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER--------FRSVTHAYYR- 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH--------HHHhhHHHcc-
Confidence 6999999999999999999988775544444432 33333344444 5678999999632 1222233333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.++++++|+|++. ..++++...|+..+.+... +.|+++|+||+|+........ .....+....+.+++
T Consensus 73 ~ad~~i~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~---------~~~~~l~~~~~~~~~ 141 (191)
T cd04112 73 DAHALLLLYDITN--KASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKR---------EDGERLAKEYGVPFM 141 (191)
T ss_pred CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCH---------HHHHHHHHHcCCeEE
Confidence 3589999999984 3566777778888887653 689999999999975332110 111122222345899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++||++|.|+++++++|.+.+.....
T Consensus 142 e~Sa~~~~~v~~l~~~l~~~~~~~~~ 167 (191)
T cd04112 142 ETSAKTGLNVELAFTAVAKELKHRKY 167 (191)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998876643
No 47
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.81 E-value=1.6e-18 Score=152.76 Aligned_cols=155 Identities=28% Similarity=0.360 Sum_probs=112.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+.+++++|++|+|||||++++.+... .+.+.+++|.+.....+.+++.++.+|||||+.+................+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~- 79 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIE- 79 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHh-
Confidence 45799999999999999999998764 4677889999888888888888999999999876542211111112223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
..+++++|+|++. ..+..+...+ .. ..++|+++|+||+|+...... .......++++
T Consensus 80 ~~~~~v~v~d~~~--~~~~~~~~~~-~~----~~~~~vi~v~nK~D~~~~~~~----------------~~~~~~~~~~~ 136 (157)
T cd04164 80 EADLVLFVIDASR--GLDEEDLEIL-EL----PADKPIIVVLNKSDLLPDSEL----------------LSLLAGKPIIA 136 (157)
T ss_pred hCCEEEEEEECCC--CCCHHHHHHH-Hh----hcCCCEEEEEEchhcCCcccc----------------ccccCCCceEE
Confidence 3589999999994 3444444322 21 247999999999999865411 11222458999
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l 415 (435)
+||+++.|+++++++|.+.+
T Consensus 137 ~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 137 ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
No 48
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.81 E-value=1e-18 Score=157.46 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=107.7
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
++|+++|++|||||||+++++...+.....+....+.....+.. ....+.+|||||...... +... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~-~~~ 71 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG--------LRDG-YYI 71 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc--------ccHH-Hhc
Confidence 47999999999999999999866543222221112222222222 235789999999854321 1111 223
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.+|++++|+|++ .+.+.+....|+..+.....+.|+++|+||+|+.... .. .. ...+......++++
T Consensus 72 ~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-~~-------~~---~~~~~~~~~~~~~e 138 (166)
T cd00877 72 GGQCAIIMFDVT--SRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK-VK-------AK---QITFHRKKNLQYYE 138 (166)
T ss_pred CCCEEEEEEECC--CHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc-CC-------HH---HHHHHHHcCCEEEE
Confidence 459999999998 4567777777889888876679999999999997322 10 01 11223334568999
Q ss_pred cccCCCCCHHHHHHHHHHHHhc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+||++|.|++++++++.+.+..
T Consensus 139 ~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 139 ISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EeCCCCCChHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 49
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.81 E-value=1.7e-18 Score=155.94 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=111.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+++++|.+|+|||||++++++..+.....+..+.+.....+..++ ..+.+|||||... +......++.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~~ 75 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES--------FRSITRSYYR 75 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHhc
Confidence 46899999999999999999998766443333333443333344443 5789999999632 2223334444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. .|++++|+|+++ ..+.++...|+..+.... ++.|+++|+||+|+........ .....+....+.++
T Consensus 76 ~-~d~il~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 143 (168)
T cd01866 76 G-AAGALLVYDITR--RETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSY---------EEGEAFAKEHGLIF 143 (168)
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCH---------HHHHHHHHHcCCEE
Confidence 3 589999999984 456777778888887653 4689999999999975432110 11112222234679
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|+|+++++..+.+.+.+
T Consensus 144 ~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 144 METSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999987643
No 50
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=1.8e-18 Score=155.35 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=108.6
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCcee-eeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTT-RGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+++++|++|+|||||++++....+.. .++.|+ .+.....+..++ ..+.+|||||... ........+.
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~ 73 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER--------FRAVTRSYYR 73 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCcccceeEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHhc
Confidence 579999999999999999999876532 333333 222223334444 4679999999743 2223334444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. ++++++|+|+++ ..+++....|+..+.... ++.|+++|+||+|+....... ......+......++
T Consensus 74 ~-~~~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~ 141 (166)
T cd04122 74 G-AAGALMVYDITR--RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT---------YEEAKQFADENGLLF 141 (166)
T ss_pred C-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC---------HHHHHHHHHHcCCEE
Confidence 4 489999999984 456777777888776643 467999999999997654221 011222233334689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|+++++..+.+.+.
T Consensus 142 ~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 142 LECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 51
>PRK11058 GTPase HflX; Provisional
Probab=99.81 E-value=1.1e-18 Score=179.46 Aligned_cols=163 Identities=21% Similarity=0.227 Sum_probs=114.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-eEEEEeCCCCCCCCchhhhHHHHH--HHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQRRDEDRNNLEKL--TLAVL 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~ie~~--~~~~l 313 (435)
.+.|+++|+||+|||||+|+|++.+..+.+.+|+|.+.....+.+++. .+.+|||||+...... +.++.+ +...+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~--~lve~f~~tl~~~ 274 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH--DLVAAFKATLQET 274 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH--HHHHHHHHHHHHh
Confidence 478999999999999999999998877889999999999888887664 8899999998543111 222222 22333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .+|++++|+|+++. .+..+...+...+.... .+.|+++|+||+|+..... . .. ... ......
T Consensus 275 ~-~ADlIL~VvDaS~~--~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~------~---~~-~~~---~~~~~~ 338 (426)
T PRK11058 275 R-QATLLLHVVDAADV--RVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE------P---RI-DRD---EENKPI 338 (426)
T ss_pred h-cCCEEEEEEeCCCc--cHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh------H---HH-HHH---hcCCCc
Confidence 3 35999999999853 44444432333333321 3689999999999964320 0 00 000 111112
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|+++|+++|.+.+..
T Consensus 339 ~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 339 RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 5889999999999999999998754
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.81 E-value=2.1e-18 Score=153.52 Aligned_cols=159 Identities=20% Similarity=0.198 Sum_probs=111.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|+|||||++++.+........+..+.+.....+..++ ..+.+|||||... ........+.+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~ 72 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER--------FRSITSSYYRG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHhCC
Confidence 3799999999999999999998776444444444444444555555 5788999999632 22233334444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
+|++++|+|+++ ..+.+....|+..+.... ++.|+++|+||+|+....... ......+....+.+++
T Consensus 73 -~d~~ilv~d~~~--~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~ 140 (164)
T smart00175 73 -AVGALLVYDITN--RESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS---------REEAEAFAEEHGLPFF 140 (164)
T ss_pred -CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC---------HHHHHHHHHHcCCeEE
Confidence 599999999984 455666666887776653 468999999999987533111 0111122223346799
Q ss_pred EcccCCCCCHHHHHHHHHHHHh
Q 037423 395 RVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++||++|.|++++++++.+.+.
T Consensus 141 e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 141 ETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 53
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.81 E-value=1.4e-18 Score=154.03 Aligned_cols=156 Identities=21% Similarity=0.155 Sum_probs=106.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|||||||++++++..+. ..+.+|+.+.....+..++ ..+.+|||||..+. ..+...++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~l~~~~~~~ 72 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY--------SAMRDQYMRT 72 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc-CCcCCcchheEEEEEEECCEEEEEEEEECCCCcch--------HHHHHHHHhc
Confidence 47999999999999999999977653 3344555444444555555 34678999997542 1223333433
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
++++++|+|+++ ..++++...|+..+.+.. .+.|+++|+||+|+...... . .....+....+.++
T Consensus 73 -~~~~i~v~~~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-------~---~~~~~~~~~~~~~~ 139 (162)
T cd04138 73 -GEGFLCVFAINS--RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVS-------S---RQGQDLAKSYGIPY 139 (162)
T ss_pred -CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceec-------H---HHHHHHHHHhCCeE
Confidence 588999999984 345666666777776542 46899999999999753210 0 11112222224589
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|++++++++.+.+
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 140 IETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1.9e-18 Score=154.94 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=107.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.++|+++|++|+|||||++++....+.....+..+.+.....+.+++ ..+.+|||||... +.......+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~ 74 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER--------FRTITQSYYR 74 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHH--------HHHHHHHHhc
Confidence 47899999999999999999987665322222222344444555555 4789999999632 2223333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (435)
. +|++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+....... ... ...+... ....
T Consensus 75 ~-~d~~llv~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~---~~~~~~~~~~~~ 142 (165)
T cd01864 75 S-ANGAIIAYDITR--RSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL------FEE---ACTLAEKNGMLA 142 (165)
T ss_pred c-CCEEEEEEECcC--HHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC------HHH---HHHHHHHcCCcE
Confidence 3 599999999984 455667667888887643 468999999999997653211 011 1112222 2246
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
++++||++|.|++++++++.+.
T Consensus 143 ~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999864
No 55
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5.8e-19 Score=157.98 Aligned_cols=168 Identities=23% Similarity=0.190 Sum_probs=124.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++++++|..|||||||+-++..+.+.-...|.+-..+....+..++ .++.||||+|+.+... ++.-+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s--------lapMY- 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS--------LAPMY- 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc--------cccce-
Confidence 457899999999999999999998877433333333344444555555 6788999999976432 23333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
...++++|+|+|+++ ..|+.....|++++.+..+ +.-+.+|+||+||.....+ ..++...|++..+..
T Consensus 75 yRgA~AAivvYDit~--~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V---------~~~ea~~yAe~~gll 143 (200)
T KOG0092|consen 75 YRGANAAIVVYDITD--EESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV---------EFEEAQAYAESQGLL 143 (200)
T ss_pred ecCCcEEEEEEeccc--HHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc---------cHHHHHHHHHhcCCE
Confidence 344589999999994 4688889999999999863 2445679999999875432 234455667777789
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
++++||++|.||+++|..|.+.+......-.
T Consensus 144 ~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 144 FFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred EEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 9999999999999999999999877654433
No 56
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.81 E-value=5.2e-19 Score=159.34 Aligned_cols=162 Identities=32% Similarity=0.438 Sum_probs=112.9
Q ss_pred EecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEE
Q 037423 242 LVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAI 320 (435)
Q Consensus 242 ~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~i 320 (435)
++|++|+|||||+|++.+....+++++++|.+...+.+.++ +..+.+|||||+.+.....++.... ....+.. ++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~-~~~~~~~-~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQ-FLAHIRR-ADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHH-HHHHHhc-cCEE
Confidence 58999999999999999887777888999999888888888 8999999999985432221111111 1222333 5899
Q ss_pred EEEEeCCCCC----CCCHHHHHHHHHHHHHhc--------CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 321 LFVHDLSGEC----GTSPSDQFTIYKEIKERF--------SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 321 l~ViD~s~~~----g~s~~~~~~l~~~l~~~~--------~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
++|+|++..+ +.+..+...+...+.... .++|+++|+||+|+....... .. . .......
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------~~-~-~~~~~~~ 149 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE-------EE-L-VRELALE 149 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH-------HH-H-HHHHhcC
Confidence 9999998542 134455555555655432 368999999999997654211 00 0 1112223
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
...+++++||++|.|++++++++...
T Consensus 150 ~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 150 EGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 34579999999999999999998765
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.81 E-value=1.3e-18 Score=155.63 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=109.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|+|||||++++....+ ...++.|+.+.....+..++ ..+.+|||||..... .+....+..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT--------AMRDLYMKN 72 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccch--------hHHHHHHhh
Confidence 5799999999999999999986654 34455666555555555655 356799999985432 122223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+++++|+|++ +..++++...|+..+.... .+.|+++|+||+|+........ .....+......++
T Consensus 73 -~d~~ilv~d~~--~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 140 (164)
T cd04175 73 -GQGFVLVYSIT--AQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK---------EQGQNLARQWGCAF 140 (164)
T ss_pred -CCEEEEEEECC--CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH---------HHHHHHHHHhCCEE
Confidence 48999999988 3456666666777776532 5689999999999975432110 01112222223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|+++++.++.+.+.
T Consensus 141 ~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 141 LETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 58
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.80 E-value=2.2e-18 Score=160.13 Aligned_cols=161 Identities=17% Similarity=0.142 Sum_probs=112.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++.+..+.....+....+.....+..++ ..+.+|||||.... ......++.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~ 77 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF--------RTITSTYYR 77 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH--------HHHHHHHhC
Confidence 57899999999999999999998765433233323334344444444 46789999997432 122333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
+ ++++++|+|+++ ..++++...|+..+.......|+++|+||+|+....... ......+....+.+++
T Consensus 78 ~-a~~iilv~D~~~--~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~ 145 (199)
T cd04110 78 G-THGVIVVYDVTN--GESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE---------TEDAYKFAGQMGISLF 145 (199)
T ss_pred C-CcEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC---------HHHHHHHHHHcCCEEE
Confidence 4 488999999984 456777778888888766678999999999997543211 0111222222346899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++||++|.||+++++++.+.+..
T Consensus 146 e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 146 ETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred EEECCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999997754
No 59
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=1.3e-18 Score=180.66 Aligned_cols=153 Identities=28% Similarity=0.417 Sum_probs=116.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH----HH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL----TL 310 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~----~~ 310 (435)
.+++|+++|++|+|||||+|++++... .+++.++||++.....+.+++..+.+|||||+.+.. +.++.. +.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~----~~ie~~gi~~~~ 289 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD----DEVEKIGIERSR 289 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc----cHHHHHHHHHHH
Confidence 568999999999999999999998764 688899999999999999999999999999997532 223332 22
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
..+.. +|++++|+|++. +.+.++.. ++.. ..++|+++|+||+|+...... . ....
T Consensus 290 ~~~~~-aD~il~VvD~s~--~~s~~~~~-~l~~----~~~~piiiV~NK~DL~~~~~~-----------~------~~~~ 344 (449)
T PRK05291 290 EAIEE-ADLVLLVLDASE--PLTEEDDE-ILEE----LKDKPVIVVLNKADLTGEIDL-----------E------EENG 344 (449)
T ss_pred HHHHh-CCEEEEEecCCC--CCChhHHH-HHHh----cCCCCcEEEEEhhhccccchh-----------h------hccC
Confidence 33333 489999999984 44555443 2222 347899999999999754311 0 1123
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|.|++++++++.+.+..
T Consensus 345 ~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999998864
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.80 E-value=2e-18 Score=154.20 Aligned_cols=158 Identities=18% Similarity=0.125 Sum_probs=107.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|+|||||++++.+..+.. .+..|+.+........++ ..+.+|||||..+.. ......+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~- 70 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD-DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS--------AMRDQYMR- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch--------HHHHHHHh-
Confidence 379999999999999999999766532 334455444444444444 467899999986532 11222333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
..+++++|+|++. ..+++....|...+.+.. .+.|+++|+||+|+....... . .....+......++
T Consensus 71 ~~~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~---~------~~~~~~~~~~~~~~ 139 (164)
T smart00173 71 TGEGFLLVYSITD--RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS---T------EEGKELARQWGCPF 139 (164)
T ss_pred hCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc---H------HHHHHHHHHcCCEE
Confidence 3488999999984 345666666666665542 368999999999997543111 0 11112222234689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|++++++++.+.+.
T Consensus 140 ~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 140 LETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred EEeecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998765
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.80 E-value=3e-18 Score=152.70 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=107.5
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+++++|++|+|||||++++.+........+..+.+.....+..++ ..+.+|||||.... .......+. .
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~-~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF--------RSVTRSYYR-G 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHH--------HHhHHHHhc-C
Confidence 689999999999999999998776444343333344334444444 56789999997432 222333343 3
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
++++++|+|+++ +.++.....|+..+.... ++.|+++|+||+|+....... ......+....+.++++
T Consensus 73 ~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~~ 141 (161)
T cd04113 73 AAGALLVYDITN--RTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVT---------FLEASRFAQENGLLFLE 141 (161)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCC---------HHHHHHHHHHcCCEEEE
Confidence 589999999994 455666667877776543 578999999999997643211 01112222223368999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~ 414 (435)
+||++|.|++++++++.+.
T Consensus 142 ~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 142 TSALTGENVEEAFLKCARS 160 (161)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 9999999999999999864
No 62
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.80 E-value=4.2e-18 Score=152.57 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=108.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|+|||||++++....+.....+....+.....+..++ ..+.+|||||..... .....++. .
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------~~~~~~~~-~ 72 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ--------TITKQYYR-R 72 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH--------hhHHHHhc-C
Confidence 689999999999999999998776443333333344444555555 467899999974321 12223333 4
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
++++++|+|+++ ..+++....|+..+..... +.|+++|+||+|+........ .....+......++++
T Consensus 73 ~~~~i~v~d~~~--~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~e 141 (161)
T cd04117 73 AQGIFLVYDISS--ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGD---------EQGNKLAKEYGMDFFE 141 (161)
T ss_pred CcEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH---------HHHHHHHHHcCCEEEE
Confidence 589999999995 3567777778888876543 589999999999975442211 1122222223368999
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~ 414 (435)
+||++|.|++++|.+|.+.
T Consensus 142 ~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 142 TSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EeCCCCCCHHHHHHHHHhh
Confidence 9999999999999999864
No 63
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.80 E-value=3.8e-18 Score=154.81 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=109.7
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|||||||++++....+.. .+..|..+.....+..++ ..+.+|||||.... ..+...++..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~l~~~~~~~ 73 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD-YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEF--------TAMRDQYMRC 73 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC-CcCCcccceEEEEEEECCEEEEEEEEeCCCchhh--------HHHhHHHhhc
Confidence 579999999999999999998776532 233343333333445555 45789999998532 1223333443
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
++++++|+|+++ ..+++....|...+.+. ..+.|+++|+||+|+........ .....+....+.++
T Consensus 74 -~d~~ilv~d~~~--~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~---------~~~~~~a~~~~~~~ 141 (172)
T cd04141 74 -GEGFIICYSVTD--RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTT---------EEGRNLAREFNCPF 141 (172)
T ss_pred -CCEEEEEEECCc--hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCH---------HHHHHHHHHhCCEE
Confidence 589999999994 46677776676666653 24689999999999875432210 11222333334689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.||+++|+++.+.+.+
T Consensus 142 ~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 142 FETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 64
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=2.3e-18 Score=178.61 Aligned_cols=159 Identities=25% Similarity=0.373 Sum_probs=118.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
++|+++|.+|||||||+|+|++.+. .+++.+++|++.......+++..+.+|||||+..........+...+..++...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999998764 678899999999999999999999999999997633222233444444455554
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
|++++|+|++ .+.+..+.. +...+... ++|+++|+||+|+.+.. ....++...+...++++
T Consensus 82 -d~il~vvd~~--~~~~~~~~~-~~~~l~~~--~~piilv~NK~D~~~~~-------------~~~~~~~~lg~~~~~~i 142 (435)
T PRK00093 82 -DVILFVVDGR--AGLTPADEE-IAKILRKS--NKPVILVVNKVDGPDEE-------------ADAYEFYSLGLGEPYPI 142 (435)
T ss_pred -CEEEEEEECC--CCCCHHHHH-HHHHHHHc--CCcEEEEEECccCccch-------------hhHHHHHhcCCCCCEEE
Confidence 9999999998 456665543 44555554 79999999999975421 01112222233358999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l 415 (435)
||++|.|++++++.+.+..
T Consensus 143 Sa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EeeCCCCHHHHHHHHHhhC
Confidence 9999999999999998843
No 65
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.79 E-value=3.6e-18 Score=161.22 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=112.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
....+|+++|.+|||||||+++++...+.....+....+.....+..+ ...+.+|||||..... .+...+
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG--------GLRDGY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhh--------hhhHHH
Confidence 566799999999999999999988766532222222122222233332 3678999999985432 122223
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+. .++++++|+|++++ .+++....|+..+.....+.|+++|+||+|+.... .. . .. . .+......+
T Consensus 83 ~~-~~~~~ilvfD~~~~--~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~---~---~~---~-~~~~~~~~~ 148 (219)
T PLN03071 83 YI-HGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK---A---KQ---V-TFHRKKNLQ 148 (219)
T ss_pred cc-cccEEEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhcc-CC---H---HH---H-HHHHhcCCE
Confidence 33 45889999999954 56777778999988776789999999999986432 10 0 11 1 233334568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.|++++|+++.+.+.+.
T Consensus 149 ~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 149 YYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999887654
No 66
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.79 E-value=3.3e-18 Score=157.51 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=111.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeee-eEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGI-LMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~-~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+|+++|.+|||||||++++.+..+....+..|.... ....+..++. .+.+|||||..+.. ... ..+..
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~-~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE--------AMS-RIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh--------hhh-HhhcC
Confidence 699999999999999999998877654555444332 2334555554 45699999975321 112 22233
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.++++++|+|+++ ..++++...|+..+.....+.|+++|+||+|+........... ......+......++++
T Consensus 73 ~~d~iilv~d~~~--~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~ 145 (193)
T cd04118 73 GAKAAIVCYDLTD--SSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVD-----FHDVQDFADEIKAQHFE 145 (193)
T ss_pred CCCEEEEEEECCC--HHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccC-----HHHHHHHHHHcCCeEEE
Confidence 4589999999984 4556666678888877655789999999999865421111000 01122233333457899
Q ss_pred cccCCCCCHHHHHHHHHHHHhcc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+||++|.|++++++++.+.+...
T Consensus 146 ~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 146 TSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877543
No 67
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.79 E-value=2e-18 Score=157.16 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=109.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|||||||++++....+. ..+..|..+.....+..++ ..+.+|||||..+.. .....++.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLRPLSYPQ 72 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh--------hhhhhhccc
Confidence 47999999999999999999987663 3444555444433455555 567899999986432 112223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcC-C
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMG-P 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~ 390 (435)
++++++|+|++++ .++++.. .|+..+....++.|+|+|+||+|+............ ..........+.... .
T Consensus 73 -a~~~ilv~d~~~~--~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~ 149 (175)
T cd01874 73 -TDVFLVCFSVVSP--SSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKA 149 (175)
T ss_pred -CCEEEEEEECCCH--HHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCC
Confidence 5899999999844 5666664 488888776567899999999998654211100000 000011222233222 2
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.+++++||++|.|++++|+.+..+
T Consensus 150 ~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 150 VKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 579999999999999999998875
No 68
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=4.2e-18 Score=186.38 Aligned_cols=164 Identities=23% Similarity=0.293 Sum_probs=122.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...++|+++|+||||||||+|++++... .+++.||+|++.......+++..+.+|||||+..........+...+..++
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999998754 678899999999888888888999999999987533222223334444445
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.. +|++++|+|++ .+.+..+.. |...+... ++|+++|+||+|+..... ....+...+....
T Consensus 353 ~~-aD~iL~VvDa~--~~~~~~d~~-i~~~Lr~~--~~pvIlV~NK~D~~~~~~-------------~~~~~~~lg~~~~ 413 (712)
T PRK09518 353 SL-ADAVVFVVDGQ--VGLTSTDER-IVRMLRRA--GKPVVLAVNKIDDQASEY-------------DAAEFWKLGLGEP 413 (712)
T ss_pred Hh-CCEEEEEEECC--CCCCHHHHH-HHHHHHhc--CCCEEEEEECcccccchh-------------hHHHHHHcCCCCe
Confidence 44 49999999987 566666654 66666654 899999999999864320 0111112222356
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.||+++++++.+.+..
T Consensus 414 ~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 414 YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred EEEECCCCCCchHHHHHHHHhccc
Confidence 899999999999999999998855
No 69
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.79 E-value=6.9e-18 Score=151.03 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=106.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
|.++++|++|+|||||++++.+..+.....+++|.+.....+..+ +..+.+|||||.... .......+
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~--------~~~~~~~~- 71 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF--------TNMRARGA- 71 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH--------HHHHHHHH-
Confidence 469999999999999999999877655556677777665666654 678999999997431 11222222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh---hhcCCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY---RKMGPD 391 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 391 (435)
..+|++++|+|++. +...+... .+..+.. .++|+++|+||+|+..... ............. ......
T Consensus 72 ~~~d~il~v~d~~~--~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd01887 72 SLTDIAILVVAADD--GVMPQTIE-AIKLAKA--ANVPFIVALNKIDKPNANP-----ERVKNELSELGLQGEDEWGGDV 141 (168)
T ss_pred hhcCEEEEEEECCC--CccHHHHH-HHHHHHH--cCCCEEEEEEceecccccH-----HHHHHHHHHhhccccccccCcC
Confidence 34589999999984 33333332 3444444 3789999999999874321 0111111111100 011235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++++||++|.|++++++++.+...
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 142 QIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cEEEeecccCCCHHHHHHHHHHhhh
Confidence 7999999999999999999988754
No 70
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.79 E-value=4.2e-18 Score=152.87 Aligned_cols=156 Identities=23% Similarity=0.172 Sum_probs=103.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|+|||||++++++..+..... .|........+.. ....+.+|||||..... .+...++.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~- 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-PTIEDTYRQVISCSKNICTLQITDTTGSHQFP--------AMQRLSIS- 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcC-CcchheEEEEEEECCEEEEEEEEECCCCCcch--------HHHHHHhh-
Confidence 579999999999999999999877643222 2222222222222 33567899999986532 12222333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.++++++|+|+++ ..+++....|+..+.+.. .+.|+++|+||+|+........ .....+......
T Consensus 72 ~~~~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~ 140 (165)
T cd04140 72 KGHAFILVYSVTS--KQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS---------NEGAACATEWNC 140 (165)
T ss_pred cCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecH---------HHHHHHHHHhCC
Confidence 3588999999984 456666666776666542 4689999999999975332110 011122222345
Q ss_pred cEEEcccCCCCCHHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
+++++||++|.|+++++++|.++
T Consensus 141 ~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 141 AFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred cEEEeecCCCCCHHHHHHHHHhc
Confidence 79999999999999999999764
No 71
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.79 E-value=8.8e-18 Score=150.91 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=107.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||.... ..+....+..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~ 72 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF--------QSLGVAFYRG 72 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH--------HhHHHHHhcC
Confidence 3799999999999999999998765433323223344444455555 44679999997431 2233344444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-----CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-cC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-----DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK-MG 389 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-----~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 389 (435)
++++++|+|++. +.+.+....|...+..... +.|+++|+||+|+........ . ....+.. ..
T Consensus 73 -~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~------~---~~~~~~~~~~ 140 (172)
T cd01862 73 -ADCCVLVYDVTN--PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVST------K---KAQQWCQSNG 140 (172)
T ss_pred -CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCH------H---HHHHHHHHcC
Confidence 489999999984 3455555567666655433 689999999999985321110 1 1111222 22
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
..+++++||++|.|++++++++.+.+.+.
T Consensus 141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 141 NIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35899999999999999999999877654
No 72
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.79 E-value=6e-18 Score=150.48 Aligned_cols=155 Identities=19% Similarity=0.147 Sum_probs=99.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCC---CccccCCceeeeeeEEEEEeC-CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK---PEVCNYPFTTRGILMGHINLG-YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~---~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.|+++|++|+|||||++++.+.. +.....+++|.+.....+.+. +..+.+|||||+.+. .......+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~--------~~~~~~~~- 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF--------IKNMLAGA- 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH--------HHHHHhhh-
Confidence 58999999999999999998643 222234567777766666665 778999999997421 11122233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc---CCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM---GPD 391 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 391 (435)
..+|++++|+|++. +...+... .+..+... ..+|+++|+||+|+...... ......+.+.... ...
T Consensus 73 ~~ad~ii~V~d~~~--~~~~~~~~-~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04171 73 GGIDLVLLVVAADE--GIMPQTRE-HLEILELL-GIKRGLVVLTKADLVDEDWL-------ELVEEEIRELLAGTFLADA 141 (164)
T ss_pred hcCCEEEEEEECCC--CccHhHHH-HHHHHHHh-CCCcEEEEEECccccCHHHH-------HHHHHHHHHHHHhcCcCCC
Confidence 34589999999873 33233322 22233322 23499999999999753200 0001111111111 346
Q ss_pred cEEEcccCCCCCHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
+++++||++|.|++++++.+..
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 142 PIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEEEEeCCCCcCHHHHHHHHhh
Confidence 8999999999999999998764
No 73
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=6.7e-18 Score=152.93 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=108.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||++++.+..+.....|....+.....+.+++ ..+.+|||||.... .......+.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~~- 72 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF--------KCIASTYYRG- 72 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH--------HhhHHHHhcC-
Confidence 689999999999999999998776433333333344444455544 46899999998432 1223333444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-C-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF-S-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
+|++++|+|+++ ..+......|+..+.+.. + ..|+++|+||+|+.+...... . ......+......+++
T Consensus 73 ad~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~-~------~~~~~~~~~~~~~~~~ 143 (170)
T cd04108 73 AQAIIIVFDLTD--VASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYAL-M------EQDAIKLAAEMQAEYW 143 (170)
T ss_pred CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccc-c------HHHHHHHHHHcCCeEE
Confidence 589999999984 345666667888776542 2 357899999999865432110 0 0111222222235799
Q ss_pred EcccCCCCCHHHHHHHHHHHHhc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++||++|.|++++++.+.+.+.+
T Consensus 144 e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 144 SVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 74
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=8.8e-18 Score=150.16 Aligned_cols=166 Identities=23% Similarity=0.313 Sum_probs=113.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH----HH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT----LA 311 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~----~~ 311 (435)
..+|+++|.+|+|||||++++++.. ....+.+++|.+.....+..++..+.+|||||+.+.... ...++.+. ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~-~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV-EEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccch-hccHHHHHHHHHHH
Confidence 4679999999999999999999875 356677888888887788888888999999998765321 11222221 22
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh-hhhcCC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS-YRKMGP 390 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 390 (435)
.+. ..|++++|+|++. +.+..... +...+... +.|+++|+||+|+.+.... ........+.. +.....
T Consensus 81 ~~~-~~d~vi~v~d~~~--~~~~~~~~-~~~~~~~~--~~~~iiv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~~ 149 (174)
T cd01895 81 AIE-RADVVLLVIDATE--GITEQDLR-IAGLILEE--GKALVIVVNKWDLVEKDSK-----TMKEFKKEIRRKLPFLDY 149 (174)
T ss_pred HHh-hcCeEEEEEeCCC--CcchhHHH-HHHHHHhc--CCCEEEEEeccccCCccHH-----HHHHHHHHHHhhcccccC
Confidence 233 3589999999884 45554443 44444443 6899999999999765311 11111111111 111123
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.+++++||++|.|++++++.+.++
T Consensus 150 ~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred CceEEEeccCCCCHHHHHHHHHHh
Confidence 589999999999999999998875
No 75
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.79 E-value=4.9e-18 Score=151.64 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=107.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|+|||||++++....+.. .+..|..+.....+..++. .+.+|||||...... .....+.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 72 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS--------MRDLYIKN 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCchhheEEEEEEECCEEEEEEEEECCCcccccc--------hHHHHHhh
Confidence 579999999999999999998776543 2334444444445555553 477899999754321 12223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
++++++|+|+++ ..++++...|+..+.... .+.|+++|+||+|+....... . . ....+....+.++
T Consensus 73 -ad~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~----~--~---~~~~~~~~~~~~~ 140 (163)
T cd04176 73 -GQGFIVVYSLVN--QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVS----S--A---EGRALAEEWGCPF 140 (163)
T ss_pred -CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccC----H--H---HHHHHHHHhCCEE
Confidence 588999999984 456677777877777653 478999999999986533111 0 0 1111222223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|+++++.++.+.+
T Consensus 141 ~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 141 METSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEecCCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998654
No 76
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=1e-17 Score=153.78 Aligned_cols=165 Identities=17% Similarity=0.120 Sum_probs=112.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|||||||++++.+..+.....+..+.+.....+..++ ..+.+|||||.... .......+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~~~- 71 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF--------RSLNNSYYR- 71 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------HhhHHHHcc-
Confidence 4799999999999999999998776432233333333334444444 46789999996431 122333333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.++++++|+|+++ ..++.....|+..+.... .+.|+++|+||+|+.+...... .....+....+.+++
T Consensus 72 ~~d~iilv~d~~~--~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~~ 140 (188)
T cd04125 72 GAHGYLLVYDVTD--QESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDS---------NIAKSFCDSLNIPFF 140 (188)
T ss_pred CCCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCH---------HHHHHHHHHcCCeEE
Confidence 4589999999984 456777777888887653 3579999999999875432110 111122222345899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcccccc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMDRI 422 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~~~ 422 (435)
++||++|.|++++++++.+.+.......
T Consensus 141 evSa~~~~~i~~~f~~l~~~~~~~~~~~ 168 (188)
T cd04125 141 ETSAKQSINVEEAFILLVKLIIKRLEEQ 168 (188)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999886654433
No 77
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.79 E-value=5.4e-18 Score=175.32 Aligned_cols=157 Identities=23% Similarity=0.296 Sum_probs=116.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH----H
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL----T 309 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~----~ 309 (435)
.++.+|+++|+||+|||||+|++++.. ..++++|+||++.....+.+++..+.+|||||+.+.. ..++.. +
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~----~~ie~~gi~~~ 276 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA----DFVERLGIEKS 276 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch----hHHHHHHHHHH
Confidence 367899999999999999999999865 4788999999999999999999999999999997543 222222 2
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
..++. .+|++++|+|++. +.+.++. |+..+.. .++|+++|+||+|+.... . .. +....
T Consensus 277 ~~~~~-~aD~il~V~D~s~--~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~~-~-----------~~---~~~~~ 334 (442)
T TIGR00450 277 FKAIK-QADLVIYVLDASQ--PLTKDDF--LIIDLNK--SKKPFILVLNKIDLKINS-L-----------EF---FVSSK 334 (442)
T ss_pred HHHHh-hCCEEEEEEECCC--CCChhHH--HHHHHhh--CCCCEEEEEECccCCCcc-h-----------hh---hhhhc
Confidence 33343 3599999999984 4555554 5555554 378999999999996431 0 01 11112
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.+++.+||++ .||+++++.+.+.+...
T Consensus 335 ~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 335 VLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred CCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 34789999998 58999998888877654
No 78
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=2.4e-18 Score=154.19 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=103.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCc----cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPE----VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~----v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
+|+++|++|+|||||++++.+.... ......+|.+.....+.+++..+.+|||||+.... ......+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR--------SLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH--------HHHHHHhC
Confidence 3789999999999999999754321 11223456666667778888999999999985421 12223333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.++++++|+|+++. .+......++..+... ..+.|+++|+||+|+...... .+.................+
T Consensus 73 -~~~~~v~vvd~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 73 -ECHAIIYVIDSTDR--ERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSV----EEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred -CCCEEEEEEECchH--HHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCH----HHHHHHhccccccccCCceE
Confidence 35899999998843 2344444455554432 246899999999998654211 11100000000001122357
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~ 413 (435)
++++||++|+|+++++++|.+
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999864
No 79
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.79 E-value=9.9e-18 Score=153.67 Aligned_cols=164 Identities=19% Similarity=0.161 Sum_probs=109.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+++++|.+|||||||++++....+.....|....+.....+..++ ..+.+|||+|..... .+...++ ..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~--------~~~~~~~-~~ 72 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI--------NMLPLVC-ND 72 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH--------HhhHHHC-cC
Confidence 689999999999999999988766432222222344334555555 567999999985421 1222233 33
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
++++++|+|++++ .++++...|+..+..... ..| |+|+||+|+........ .... ......++...+.++++
T Consensus 73 a~~iilv~D~t~~--~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~e 145 (182)
T cd04128 73 AVAILFMFDLTRK--STLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-QEEI---TKQARKYAKAMKAPLIF 145 (182)
T ss_pred CCEEEEEEECcCH--HHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchh-hhhh---HHHHHHHHHHcCCEEEE
Confidence 5899999999854 567777778888876533 345 68999999964211000 0001 12233344444568999
Q ss_pred cccCCCCCHHHHHHHHHHHHhcc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+||++|.|++++|+++.+.+...
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999877653
No 80
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=1.3e-17 Score=149.64 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=109.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+++++|++|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||.... ......++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 78 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF--------RSITQSYYR 78 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHhc
Confidence 47899999999999999999987655433334444455555566665 45788999997432 222333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. ++++++|+|++ ++.+.+....|+..+..... +.|+++|+||+|+........ +. ...+......++
T Consensus 79 ~-~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~---~~------~~~~~~~~~~~~ 146 (169)
T cd04114 79 S-ANALILTYDIT--CEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQ---QR------AEEFSDAQDMYY 146 (169)
T ss_pred C-CCEEEEEEECc--CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCH---HH------HHHHHHHcCCeE
Confidence 4 58999999988 44556666667777766543 588999999999875432211 11 112222223579
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|+++++++|.+.+
T Consensus 147 ~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 147 LETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998754
No 81
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.7e-18 Score=154.74 Aligned_cols=163 Identities=21% Similarity=0.163 Sum_probs=126.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++|+++|.+|||||+++-++....+..+.....-.|+....+..++ ..+++|||+|+.... .+. .++
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~--------ti~-~sY 81 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR--------TIT-TAY 81 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH--------HHH-HHH
Confidence 567899999999999999999998877554443334566666677766 457999999996532 223 344
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.+.++.+++|+|+++ ..++++...|+..+.+..+ +.|.++|+||+|+.....+. ......++...+.+
T Consensus 82 yrgA~gi~LvyDitn--e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~---------~e~ge~lA~e~G~~ 150 (207)
T KOG0078|consen 82 YRGAMGILLVYDITN--EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVS---------KERGEALAREYGIK 150 (207)
T ss_pred HhhcCeeEEEEEccc--hHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccccc---------HHHHHHHHHHhCCe
Confidence 455689999999995 4788888889999999864 78999999999998755332 23344455556789
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.||++.|-.+.+.+...
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i~~k 176 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDILQK 176 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999987753
No 82
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=4.4e-18 Score=152.53 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=106.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|+|||||+++++...+ ...++.++.......+..++. .+.+|||||....... .....+. .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~-~ 71 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF-IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE-------QLERSIR-W 71 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc-ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc-------hHHHHHH-h
Confidence 489999999999999999987654 334555554444444455543 5789999998742110 1122233 3
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+|++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+....... ......+....+.++
T Consensus 72 ~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~~~ 140 (165)
T cd04146 72 ADGFVLVYSITD--RSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS---------TEEGEKLASELGCLF 140 (165)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC---------HHHHHHHHHHcCCEE
Confidence 589999999984 456666666777776642 378999999999986443211 011122222233589
Q ss_pred EEcccCCC-CCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNE-EGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g-~GI~eL~~~i~~~l~ 416 (435)
+++||++| .|++++|+.+++.+.
T Consensus 141 ~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 141 FEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred EEeCCCCCchhHHHHHHHHHHHHh
Confidence 99999999 599999999998653
No 83
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=1.3e-17 Score=150.52 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||+++++...+.....+....+.....+.+++ ..+.+|||||..+. .......+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~ 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF--------RKSMVQHYY 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH--------HHhhHHHhh
Confidence 35799999999999999999987765433333333344444455555 57899999997431 111122223
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+..|++++|+|++ .+.++++...|+..+.... .+.|+++|+||+|+........ .....+......+
T Consensus 74 ~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~ 142 (170)
T cd04115 74 RNVHAVVFVYDVT--NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT---------DLAQRFADAHSMP 142 (170)
T ss_pred cCCCEEEEEEECC--CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCH---------HHHHHHHHHcCCc
Confidence 4458999999998 4567778878888887653 4689999999999875432211 1111222233468
Q ss_pred EEEcccCC---CCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMN---EEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~---g~GI~eL~~~i~~~l 415 (435)
++++||++ +.|+++++..+.+.+
T Consensus 143 ~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 143 LFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 99999999 899999999998765
No 84
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.78 E-value=1.4e-17 Score=147.53 Aligned_cols=157 Identities=22% Similarity=0.191 Sum_probs=106.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+++++|.+|+|||||++++.+........+.++.+.....+...+ ..+.+|||||.... .......+ +.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~-~~ 72 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY--------HALGPIYY-RD 72 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHH--------HHhhHHHh-cc
Confidence 799999999999999999997765433333333444444444444 46889999996321 12222233 34
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
++++++|+|+++ +.+.++...|+..+..... +.|+++|+||+|+........ .....+......++++
T Consensus 73 ~~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~---------~~~~~~~~~~~~~~~~ 141 (162)
T cd04123 73 ADGAILVYDITD--ADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSK---------SEAEEYAKSVGAKHFE 141 (162)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCH---------HHHHHHHHHcCCEEEE
Confidence 589999999984 3456666667777776543 589999999999875432110 1111122223457899
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l 415 (435)
+||++|.|++++++++.+.+
T Consensus 142 ~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 142 TSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998764
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=1.5e-17 Score=148.49 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=105.2
Q ss_pred EEEEecCCCCChhhHHHHhhCCC-CccccCCcee-eeeeEEEEEe---CCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTT-RGILMGHINL---GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT-~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+|+++|.+|+|||||++++.... .....+..|+ .+.....+.. ....+.+|||||... .+.....++
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~ 73 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL--------YSDMVSNYW 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH--------HHHHHHHHh
Confidence 68999999999999999998542 2223343333 3333333333 236789999999632 122333344
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. .+|++++|+|+++ ..++.+...|+..+.....+.|+++|+||+|+.+...... . ....+....+.++
T Consensus 74 ~-~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-------~--~~~~~~~~~~~~~ 141 (164)
T cd04101 74 E-SPSVFILVYDVSN--KASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTD-------A--QAQAFAQANQLKF 141 (164)
T ss_pred C-CCCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCH-------H--HHHHHHHHcCCeE
Confidence 4 3599999999984 3455666678888777655689999999999965432110 0 1111222223579
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|++++++.+.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
No 86
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=8.5e-18 Score=153.39 Aligned_cols=166 Identities=15% Similarity=0.095 Sum_probs=111.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|||||||+.++....+.. .+..|..+.....+..++ .++.+|||+|..+... +...++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~--------~~~~~~~- 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPT-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR--------LRPLSYR- 71 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-CCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc--------cchhhcC-
Confidence 479999999999999999999877643 333344333333344444 5679999999865321 2222344
Q ss_pred CCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc-ccchhhhHHHHHHHhhhhcCCC-c
Q 037423 316 LPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVA-YVTEDEDSEHLEMASYRKMGPD-G 392 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~ 392 (435)
.++++++|+|+++ ..++++. ..|+..+.....+.|+++|+||+|+.+..... ...............++...+. +
T Consensus 72 ~a~~~ilvyd~~~--~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 149 (176)
T cd04133 72 GADVFVLAFSLIS--RASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAA 149 (176)
T ss_pred CCcEEEEEEEcCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCE
Confidence 3589999999994 4677776 46899888766678999999999996532100 0000000001223334443344 5
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++++||++|.||+++|+.+.+.+
T Consensus 150 ~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 150 YIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEECCCCcccCHHHHHHHHHHHH
Confidence 99999999999999999999876
No 87
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=9.1e-18 Score=153.68 Aligned_cols=166 Identities=18% Similarity=0.126 Sum_probs=109.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-C--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-Y--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+|+++|.+|+|||||++++.+..+... +..|+.......+... + ..+.+|||||..+. ......++ .
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~-~ 71 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEE-YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY--------DRLRPLSY-P 71 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCC-CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH--------HHHHHHhC-C
Confidence 699999999999999999998766433 3334333333334333 2 46799999997432 11222223 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC-cE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD-GA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 393 (435)
.+|++++|+|+++ ..++++.. .|+..+....++.|+++|+||+|+........... ......+....+. ++
T Consensus 72 ~ad~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~-----~~~~~~~~~~~~~~~~ 144 (187)
T cd04132 72 DVDVLLICYAVDN--PTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVT-----PAQAESVAKKQGAFAY 144 (187)
T ss_pred CCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcC-----HHHHHHHHHHcCCcEE
Confidence 4599999999984 45666654 47777765556789999999999975431110000 1122222222233 79
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
+++||++|.|++++++.+.+.+.....+
T Consensus 145 ~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 172 (187)
T cd04132 145 LECSAKTMENVEEVFDTAIEEALKKEGK 172 (187)
T ss_pred EEccCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999988765543
No 88
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=1.1e-17 Score=157.05 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=114.0
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-C--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-Y--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+|+++|.+|||||||++++++..+.....+..+.+.....+.+. + ..+++|||||.... ......++.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 74 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF--------RSITRSYYR 74 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH--------HHHHHHHhc
Confidence 689999999999999999999876543333333345444444442 2 46889999997432 223333443
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. ++++++|+|+++ ..++++...|+..+.... ...|+++|+||+|+........ .....+....+.+
T Consensus 75 ~-~d~iilv~D~~~--~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~---------~~~~~~~~~~~~~ 142 (211)
T cd04111 75 N-SVGVLLVFDITN--RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTR---------EEAEKLAKDLGMK 142 (211)
T ss_pred C-CcEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCH---------HHHHHHHHHhCCE
Confidence 3 589999999984 456777777888887653 2467899999999976432211 1112223333468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
++++||++|.|+++++++|.+.+.....+-+
T Consensus 143 ~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~ 173 (211)
T cd04111 143 YIETSARTGDNVEEAFELLTQEIYERIKRGE 173 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999997766544433
No 89
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.78 E-value=1.1e-17 Score=153.44 Aligned_cols=168 Identities=17% Similarity=0.103 Sum_probs=112.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|||||||++++....+.. .+..|..+.....+..++ ..+.+|||+|.... ..+...++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~-~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~--------~~~~~~~~ 74 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY--------DNVRPLSY 74 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCC-ccCCceeeeeEEEEEECCEEEEEEEEECCCchhh--------Hhhhhhhc
Confidence 35689999999999999999999876532 333343333333444444 46899999998432 12222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc---hhhhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT---EDEDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 389 (435)
. .++++++|+|+++ ..+++.. ..|+..+....++.|+++|+||+||.+........ ...........+++...
T Consensus 75 ~-~ad~~ilvyDit~--~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 75 P-DSDAVLICFDISR--PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred C-CCCEEEEEEECCC--HHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 3 3589999999994 4677775 57899988877789999999999986421000000 00000112344455444
Q ss_pred C-CcEEEcccCCCCC-HHHHHHHHHHHH
Q 037423 390 P-DGAIRVSVMNEEG-LNELKDRVYQML 415 (435)
Q Consensus 390 ~-~~~i~vSA~~g~G-I~eL~~~i~~~l 415 (435)
+ .+++++||++|+| |+++|+.+.+..
T Consensus 152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 152 GAATYIECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred CCCEEEECCcCCCCCCHHHHHHHHHHHH
Confidence 5 4899999999998 999999998853
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=1.1e-17 Score=149.02 Aligned_cols=156 Identities=17% Similarity=0.126 Sum_probs=104.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|++|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||.... .......+ +
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~-~ 71 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF--------RTLTSSYY-R 71 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhh--------hhhhHHHh-C
Confidence 3789999999999999999998765332223222222222333333 56899999997432 11222233 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+|++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+...... . .....+......++
T Consensus 72 ~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~-------~---~~~~~~~~~~~~~~ 139 (161)
T cd01863 72 GAQGVILVYDVTR--RDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT-------R---EEGLKFARKHNMLF 139 (161)
T ss_pred CCCEEEEEEECCC--HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccC-------H---HHHHHHHHHcCCEE
Confidence 4589999999984 455667667877777653 46899999999999733211 0 11122222335689
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~ 414 (435)
+++||++|.|++++++.+.+.
T Consensus 140 ~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 140 IETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 91
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.78 E-value=7.8e-18 Score=149.76 Aligned_cols=155 Identities=18% Similarity=0.150 Sum_probs=99.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
.|+++|.+|||||||++++.+.......+. .|.+.....+..++.++.+|||||..... .....++.+ ++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~~~-~d 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYR--------GLWEHYYKN-IQ 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhhH--------HHHHHHHcc-CC
Confidence 378999999999999999997653222222 22233334455677889999999985421 122233444 58
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHh----cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh--hcCCCc
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKER----FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR--KMGPDG 392 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~----~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 392 (435)
++++|+|+++. .+......++..+... ..+.|+++|+||+|+...... . ......... .....+
T Consensus 71 ~ii~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~----~~~~~l~~~~~~~~~~~ 140 (162)
T cd04157 71 GIIFVIDSSDR--LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA----V----KITQLLGLENIKDKPWH 140 (162)
T ss_pred EEEEEEeCCcH--HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH----H----HHHHHhCCccccCceEE
Confidence 99999999843 3444434455554332 136899999999999754311 0 111111111 111235
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~ 413 (435)
++++||++|.|+++++++|.+
T Consensus 141 ~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 141 IFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEeeCCCCCchHHHHHHHhc
Confidence 899999999999999999864
No 92
>PTZ00369 Ras-like protein; Provisional
Probab=99.78 E-value=9.3e-18 Score=154.47 Aligned_cols=162 Identities=17% Similarity=0.077 Sum_probs=109.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++|+++|.+|+|||||++++.+..+. ..+..|+.+.....+..++ ..+.+|||||..+.. .+...++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~l~~~~~ 74 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI-DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS--------AMRDQYM 74 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch--------hhHHHHh
Confidence 4578999999999999999999977653 2233333333333344444 457789999986532 1222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
..++++++|+|+++ ..++++...|...+.... .+.|+++|+||+|+........ .....+......
T Consensus 75 -~~~d~iilv~D~s~--~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~---------~~~~~~~~~~~~ 142 (189)
T PTZ00369 75 -RTGQGFLCVYSITS--RSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVST---------GEGQELAKSFGI 142 (189)
T ss_pred -hcCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH---------HHHHHHHHHhCC
Confidence 34589999999984 346667777887776653 3679999999999865331110 011112222235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|.||+++++++.+.+...
T Consensus 143 ~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 143 PFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999877554
No 93
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.78 E-value=1.1e-17 Score=149.02 Aligned_cols=158 Identities=25% Similarity=0.208 Sum_probs=105.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|++|+|||||++++++..+.....+.+........+.++ +..+.+|||||... ........+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~~- 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER--------YRSLAPMYYR- 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHH--------HHHHHHHHhc-
Confidence 579999999999999999999877533222222222222233333 35688999999632 1222333333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..+++++|+|++. ..+......|+..+.... .+.|+++|+||+|+....... ......+....+.+++
T Consensus 73 ~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~ 141 (163)
T cd01860 73 GAAAAIVVYDITS--EESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS---------TEEAQEYADENGLLFF 141 (163)
T ss_pred cCCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC---------HHHHHHHHHHcCCEEE
Confidence 3589999999984 345666666888777764 468899999999987532111 0111122222236799
Q ss_pred EcccCCCCCHHHHHHHHHHHH
Q 037423 395 RVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l 415 (435)
++||++|.|++++++++.+.+
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 142 ETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 999999999999999998875
No 94
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.78 E-value=1e-17 Score=151.33 Aligned_cols=158 Identities=21% Similarity=0.204 Sum_probs=105.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|.+|||||||++++.+..+. . ..+|.+.....+.+++..+.+|||||..... ......+.. +|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~--------~~~~~~~~~-ad 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR--------PLWKHYYLN-TQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-cCCcCceeEEEEEECCEEEEEEECCCChhcc--------hHHHHHhcc-CC
Confidence 4889999999999999999876442 2 2344554445667778899999999985432 122223333 58
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh---cCCCcE
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK---MGPDGA 393 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 393 (435)
+++||+|++++ .+..+...++..+... ..+.|+++|+||+|+...... ........... .....+
T Consensus 69 ~ii~V~D~s~~--~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 138 (169)
T cd04158 69 AVVFVVDSSHR--DRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV--------EEMTELLSLHKLCCGRSWYI 138 (169)
T ss_pred EEEEEEeCCcH--HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH--------HHHHHHhCCccccCCCcEEE
Confidence 99999999853 3455555566666532 235799999999999643210 11111111111 112357
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.||++++++|.+.+...
T Consensus 139 ~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 139 QGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 8999999999999999998876543
No 95
>PLN03110 Rab GTPase; Provisional
Probab=99.78 E-value=1.7e-17 Score=156.30 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=115.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|++|||||||++++.+..+.....+....+.....+.+++ ..+.+|||||... +......++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~--------~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER--------YRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH--------HHHHHHHHh
Confidence 346899999999999999999998776544444444455555565555 4789999999743 222333344
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .++++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+........ .....+......+
T Consensus 83 ~-~~~~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~---------~~~~~l~~~~~~~ 150 (216)
T PLN03110 83 R-GAVGALLVYDITK--RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAE---------EDGQALAEKEGLS 150 (216)
T ss_pred C-CCCEEEEEEECCC--hHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCH---------HHHHHHHHHcCCE
Confidence 4 4589999999984 456677777888887654 3689999999999965432211 1111222233568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|++++++.+.+.+..
T Consensus 151 ~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 151 FLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987755
No 96
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=6.7e-18 Score=152.41 Aligned_cols=164 Identities=18% Similarity=0.125 Sum_probs=107.5
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
|+++|.+|||||||++++.+..+... +..+..+.....+..++. .+.+|||||...... +....+ ..+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~-~~~ 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-YVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR--------LRPLSY-PDT 70 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-CCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch--------hchhhc-CCC
Confidence 57999999999999999998766433 333333333344455553 578999999854321 111223 335
Q ss_pred cEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch---hhhHHHHHHHhhhhcCC-Cc
Q 037423 318 TAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTE---DEDSEHLEMASYRKMGP-DG 392 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~ 392 (435)
|++++|+|+++ ..++++.. .|+..+....++.|+++|+||+|+........... ...........+....+ .+
T Consensus 71 d~~ilv~d~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (174)
T smart00174 71 DVFLICFSVDS--PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred CEEEEEEECCC--HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence 99999999984 35566654 48888887767899999999999975321100000 00001112223333333 37
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++++||++|.|++++++.+.+.+
T Consensus 149 ~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 149 YLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998865
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.78 E-value=1.6e-17 Score=147.73 Aligned_cols=158 Identities=18% Similarity=0.116 Sum_probs=106.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
++|+++|.+|+|||||+++++...+. ..+.+++.+........++ ..+.+|||||..... ......+.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~~ 71 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA--------AIRDNYHRS 71 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc-cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh--------HHHHHHhhc
Confidence 47999999999999999999876543 3444555444444444443 568999999975432 233334444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +++++|+|++. ..+......|...+... ..+.|+++|+||+|+....... . .....+......++
T Consensus 72 ~-~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~------~---~~~~~~~~~~~~~~ 139 (164)
T cd04139 72 G-EGFLLVFSITD--MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS------S---EEAANLARQWGVPY 139 (164)
T ss_pred C-CEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccC------H---HHHHHHHHHhCCeE
Confidence 4 88999999883 34555555566666654 2479999999999997632110 0 11111122223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|++++++.+.+.+.
T Consensus 140 ~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 140 VETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.77 E-value=1.5e-17 Score=150.26 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=100.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+|+++|.+|+|||||++++....+. ...| |.......+...+..+++|||||.... ......++..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~~ 76 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIP--TVGFNVETVTYKNVKFNVWDVGGQDKI--------RPLWRHYYTG 76 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccC--CcccceEEEEECCEEEEEEECCCCHHH--------HHHHHHHhcc
Confidence 4578999999999999999999865542 2222 222333345556788999999998532 2222333444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHH--hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh--hcCCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKE--RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR--KMGPD 391 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~--~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 391 (435)
+++++||+|+++. .+..+...++..+.. ...+.|+++|+||+|+...... .+........ .....
T Consensus 77 -a~~ii~v~D~t~~--~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------~~i~~~~~~~~~~~~~~ 145 (168)
T cd04149 77 -TQGLIFVVDSADR--DRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKP--------HEIQEKLGLTRIRDRNW 145 (168)
T ss_pred -CCEEEEEEeCCch--hhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCH--------HHHHHHcCCCccCCCcE
Confidence 5899999999854 345554444544433 1246899999999998643210 0111111111 11123
Q ss_pred cEEEcccCCCCCHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
+++++||++|.|+++++++|.+
T Consensus 146 ~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCCChHHHHHHHhc
Confidence 6899999999999999999864
No 99
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=1.6e-17 Score=151.76 Aligned_cols=166 Identities=16% Similarity=0.075 Sum_probs=110.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|||||||++++.+..+.. .+..|..+.....+..++ ..+.+|||||..... .+...++ .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~--------~~~~~~~-~ 71 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPE-TYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD--------NVRPLCY-P 71 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCC-CcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh--------hcchhhc-C
Confidence 479999999999999999999876643 333343333333444544 567899999974321 1122233 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc---hhhhHHHHHHHhhhhcCCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT---EDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 391 (435)
.++++++|+|+++ ..++++. ..|+..+....++.|+++|+||+||.......... ...........+++...+.
T Consensus 72 ~a~~~ilvfdit~--~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 72 DSDAVLICFDISR--PETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred CCCEEEEEEECCC--hhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 4589999999984 4677774 57999898877789999999999996421000000 0000011233344444454
Q ss_pred -cEEEcccCCCCC-HHHHHHHHHHHH
Q 037423 392 -GAIRVSVMNEEG-LNELKDRVYQML 415 (435)
Q Consensus 392 -~~i~vSA~~g~G-I~eL~~~i~~~l 415 (435)
+++++||++|+| |+++|..+.++.
T Consensus 150 ~~~~E~SA~~~~~~v~~~F~~~~~~~ 175 (178)
T cd04131 150 EIYLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred CEEEECccCcCCcCHHHHHHHHHHHH
Confidence 799999999995 999999999853
No 100
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.77 E-value=1.4e-17 Score=150.75 Aligned_cols=156 Identities=18% Similarity=0.149 Sum_probs=103.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|++|+|||||++++.+.... .+. .|.+.....+.+++..+.+|||||.... ..+...++..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~~ 81 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKTL--------RPYWRNYFES 81 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHHH--------HHHHHHHhCC
Confidence 4578999999999999999999876432 221 2333444556667788999999998531 1223334443
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh--hhcCCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY--RKMGPD 391 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 391 (435)
++++++|+|+++. .+..+...++..+... ..+.|+++|+||+|+...... + ........ ......
T Consensus 82 -~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----~----~~~~~~~~~~~~~~~~ 150 (173)
T cd04154 82 -TDALIWVVDSSDR--LRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSE----E----EIREALELDKISSHHW 150 (173)
T ss_pred -CCEEEEEEECCCH--HHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCH----H----HHHHHhCccccCCCce
Confidence 5899999999843 3444444455554321 257899999999999754210 0 11111111 012235
Q ss_pred cEEEcccCCCCCHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
+++++||++|.|++++++++.+
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 7999999999999999999863
No 101
>PRK04213 GTP-binding protein; Provisional
Probab=99.77 E-value=2e-17 Score=153.40 Aligned_cols=167 Identities=25% Similarity=0.280 Sum_probs=106.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc---hhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD---EDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~---~~~~~ie~~~~~~ 312 (435)
..++|+++|.+|+|||||+|++.+..+.++..|++|.+.... .++ .+.+|||||+..... ...+.+......+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 457899999999999999999998887777888888875533 333 689999999743221 1122233333333
Q ss_pred Hh---cCCcEEEEEEeCCCCCCC---------CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHH
Q 037423 313 LT---HLPTAILFVHDLSGECGT---------SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHL 380 (435)
Q Consensus 313 l~---~~~d~il~ViD~s~~~g~---------s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~ 380 (435)
+. ...+++++|+|++..... ...+ ..+...+.. .+.|+++|+||+|+.... .+. ..
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl~~~~------~~~---~~ 151 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPID-VEMFDFLRE--LGIPPIVAVNKMDKIKNR------DEV---LD 151 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHH-HHHHHHHHH--cCCCeEEEEECccccCcH------HHH---HH
Confidence 32 223688999998642111 1111 223444444 379999999999986532 001 11
Q ss_pred HHHhhhhc------CCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 381 EMASYRKM------GPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 381 ~~~~~~~~------~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.+...... ...+++++||++| |+++++++|.+.+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 11111111 0125899999999 99999999999876543
No 102
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=3e-18 Score=164.09 Aligned_cols=162 Identities=30% Similarity=0.455 Sum_probs=120.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCce-EEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN-FQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~-~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
..+++||.||+|||||+|+++.+++.+++|+|||..+..+.+.+++.. +.+-|.||+.+.....+. +...+++|.
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG----lG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG----LGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCc----ccHHHHHHH
Confidence 348999999999999999999999999999999999999999998755 999999999988765543 456666665
Q ss_pred --CcEEEEEEeCCCCCCCCHHHHH-HHHHHHHH---hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 317 --PTAILFVHDLSGECGTSPSDQF-TIYKEIKE---RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 317 --~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~---~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+..++||+|.+...-.+..++. .+..++.. ...++|.++|+||+|+.+.+. +. ...+.... ..
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~------~~---l~~L~~~l--q~ 341 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK------NL---LSSLAKRL--QN 341 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH------HH---HHHHHHHc--CC
Confidence 4779999999965333444333 33444432 236789999999999864321 11 11222211 12
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
..++++||++++|+++|++.+.+.
T Consensus 342 ~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred CcEEEeeeccccchHHHHHHHhhc
Confidence 249999999999999999988754
No 103
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=3e-17 Score=145.23 Aligned_cols=163 Identities=25% Similarity=0.353 Sum_probs=108.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
..+|+++|.+|+|||||+|++++... .+.+.+.+++.........++..+.+|||||+..........+.......+ .
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL-K 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH-H
Confidence 46799999999999999999998764 344556677766666655566789999999987654322222222222333 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC-CCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG-PDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 394 (435)
..|++++|+|++.. .+..+.. +...+... +.|+++|+||+|+..... ..... ...+.... ..+++
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~-~~~~~~~~--~~~~iiv~nK~Dl~~~~~------~~~~~---~~~~~~~~~~~~~~ 147 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEF-ILELLKKS--KTPVILVLNKIDLVKDKE------DLLPL---LEKLKELGPFAEIF 147 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHH-HHHHHHHh--CCCEEEEEEchhccccHH------HHHHH---HHHHHhccCCCceE
Confidence 34899999999843 2333332 44555543 689999999999974321 11111 11112222 35789
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 037423 395 RVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~ 414 (435)
++|++++.|++++++.|.+.
T Consensus 148 ~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 148 PISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEeccCCChHHHHHHHHhh
Confidence 99999999999999999765
No 104
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=2.3e-17 Score=144.80 Aligned_cols=154 Identities=22% Similarity=0.193 Sum_probs=106.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|++|+|||||++++.+........+.++.+.....+.. ....+.+|||||... ........+.+
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~- 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER--------FRSITPSYYRG- 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHH--------HHHHHHHHhcC-
Confidence 6899999999999999999987764433333344444444444 336789999999842 22234444544
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.|++++|+|+++. .+......|+..+.... .+.|+++|+||+|+....... ......+......++++
T Consensus 73 ~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~~ 141 (159)
T cd00154 73 AHGAILVYDITNR--ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVS---------TEEAQQFAKENGLLFFE 141 (159)
T ss_pred CCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccccc---------HHHHHHHHHHcCCeEEE
Confidence 4899999999853 34556566787777764 468999999999997332111 11122233334568999
Q ss_pred cccCCCCCHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVY 412 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~ 412 (435)
+||++|.|+++++++|.
T Consensus 142 ~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 142 TSAKTGENVEELFQSLA 158 (159)
T ss_pred EecCCCCCHHHHHHHHh
Confidence 99999999999999885
No 105
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=2.6e-17 Score=156.39 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=112.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|||||+|++++....+.. .+..|........+..++ ..+.||||+|.... ..+...++.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~-~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~--------~~~~~~~~~ 83 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY--------DNVRPLCYS 83 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCC-CcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh--------HHHHHHHcC
Confidence 4689999999999999999999876643 333333333333344444 56899999997432 122333344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHH-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcccc-ch--hhhHHHHHHHhhhhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSD-QFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYV-TE--DEDSEHLEMASYRKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~-~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~ 390 (435)
.++++++|+|+++ ..+++. ...|+..+....++.|+|+|+||+|+......... .. ...........++...+
T Consensus 84 -~ad~vIlVyDit~--~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 84 -DSDAVLLCFDISR--PETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred -CCcEEEEEEECCC--hHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 4589999999994 466766 35688988876667899999999998642110000 00 00001123445555555
Q ss_pred C-cEEEcccCCCC-CHHHHHHHHHHHHhc
Q 037423 391 D-GAIRVSVMNEE-GLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~-~~i~vSA~~g~-GI~eL~~~i~~~l~~ 417 (435)
. +++++||++|+ ||+++|..+...+..
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 5 59999999998 899999999887644
No 106
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.77 E-value=1.2e-17 Score=154.05 Aligned_cols=161 Identities=18% Similarity=0.197 Sum_probs=103.6
Q ss_pred EEEEecCCCCChhhHHHHhhCC-------CCccccCCceeeeeeEEEEEeC--------------CceEEEEeCCCCCCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTG-------KPEVCNYPFTTRGILMGHINLG--------------YQNFQITDTPGLLQR 297 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~-------~~~v~~~~~tT~~~~~~~~~~~--------------~~~~~liDTpG~~~~ 297 (435)
+|+++|++|+|||||++++++. .......+++|.+.....+.+. +..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 5899999999999999999862 2234445678877766656554 67899999999832
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhH
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
+....... .+..|++++|+|++ .+.+.++...+ .. ... .+.|+++|+||+|+..........++...
T Consensus 81 -------~~~~~~~~-~~~~d~vi~VvD~~--~~~~~~~~~~~-~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 81 -------LIRTIIGG-AQIIDLMLLVVDAT--KGIQTQTAECL-VI-GEI-LCKKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred -------HHHHHHHH-HhhCCEEEEEEECC--CCccHHHHHHH-HH-HHH-cCCCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 11111122 23358999999988 44444443322 22 222 26799999999999754311110111111
Q ss_pred HHHHHHh-hh--hcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 378 EHLEMAS-YR--KMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 378 ~~~~~~~-~~--~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.+.. +. .....+++++||++|.|+++|++++.+.+.
T Consensus 148 ---~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 148 ---KLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred ---HHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 1111 11 123468999999999999999999998764
No 107
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.77 E-value=2.4e-17 Score=148.29 Aligned_cols=158 Identities=17% Similarity=0.143 Sum_probs=105.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+++++|.+|+|||||++++.+..+.....+..+.+.....+..++ ..+.+|||||... ........+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~ 75 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER--------FRSLRTPFY 75 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHH--------HHHhHHHHh
Confidence 346899999999999999999998776544444333343334444444 4578999999743 122333344
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.. ++++++|+|+++ ..+++....|...+.... .+.|+++|+||+|+.... .. .....++...
T Consensus 76 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~---------~~~~~~~~~~ 142 (170)
T cd04116 76 RG-SDCCLLTFAVDD--SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VS---------TEEAQAWCRE 142 (170)
T ss_pred cC-CCEEEEEEECCC--HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cC---------HHHHHHHHHH
Confidence 43 489999999984 345666666777665532 357999999999986322 10 0112222222
Q ss_pred -CCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 389 -GPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 389 -~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
...+++++||++|.|++++++.+.+.
T Consensus 143 ~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 143 NGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 22479999999999999999998864
No 108
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.77 E-value=1.6e-17 Score=153.32 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=111.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+++++|..|||||||+.++....+.. .+..|..+.....+..++ ..+.+|||||..... .+...++
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~--------~l~~~~~- 72 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK-EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD--------RLRTLSY- 72 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc-CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhhhc-
Confidence 4689999999999999999999876532 233333333333334444 567899999985421 2222233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhh---hHHHHHHHhhhhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDE---DSEHLEMASYRKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 390 (435)
..++++++|+|++++ .+++... .|...+....++.|+++|+||+||.+.........+. .........++...+
T Consensus 73 ~~a~~~ilvydit~~--~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 73 PQTNVFIICFSIASP--SSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred cCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 345899999999954 5667764 4777777665689999999999996542110000000 001112333443333
Q ss_pred -CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 -DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 -~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|+||+++|+++.+.+..
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 479999999999999999999987754
No 109
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=2e-17 Score=156.40 Aligned_cols=163 Identities=16% Similarity=0.140 Sum_probs=109.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceee-eeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTR-GILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~-~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+|+++|.+|||||||++++....+....++.+.. +.....+.++ ...+.+|||||... ......+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 70 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM----------WTEDSCMQ 70 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch----------HHHhHHhh
Confidence 37999999999999999999866554223332221 3334444443 36689999999861 01111222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..+|++++|+|++++ .+++....|+..+.... .+.|+|+|+||+|+........ .....+....+.+
T Consensus 71 ~~ad~iilV~d~td~--~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~---------~~~~~~a~~~~~~ 139 (221)
T cd04148 71 YQGDAFVVVYSVTDR--SSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSV---------QEGRACAVVFDCK 139 (221)
T ss_pred cCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecH---------HHHHHHHHHcCCe
Confidence 146999999999954 45666666777776642 4689999999999976442210 1111222223457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
++++||++|.||+++++++.+.+......
T Consensus 140 ~~e~SA~~~~gv~~l~~~l~~~~~~~~~~ 168 (221)
T cd04148 140 FIETSAGLQHNVDELLEGIVRQIRLRRDS 168 (221)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999988654443
No 110
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.77 E-value=1.4e-17 Score=157.19 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=107.2
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|.+|||||||++++....+.. .. .|.........+....+.+|||||..... .....++. .++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~-~~--~Tig~~~~~~~~~~~~l~iwDt~G~e~~~--------~l~~~~~~-~ad 69 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD-TV--STVGGAFYLKQWGPYNISIWDTAGREQFH--------GLGSMYCR-GAA 69 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC-CC--CccceEEEEEEeeEEEEEEEeCCCcccch--------hhHHHHhc-cCC
Confidence 68999999999999999999877642 22 23322223333455678999999985432 12223343 359
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCcc--------c--cchhhhHHHHHHHhhhh
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVA--------Y--VTEDEDSEHLEMASYRK 387 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~--------~--~~~~~~~~~~~~~~~~~ 387 (435)
++++|+|++. ..++++...|+..+.+.. .+.|+|+|+||+|+....... . ..............++.
T Consensus 70 ~~IlV~Dvt~--~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~ 147 (220)
T cd04126 70 AVILTYDVSN--VQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK 147 (220)
T ss_pred EEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHH
Confidence 9999999994 456777766666666542 458999999999997521000 0 00000001112222222
Q ss_pred cC--------------CCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 388 MG--------------PDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 388 ~~--------------~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.. ..+++++||++|.||+++|..+.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~ 193 (220)
T cd04126 148 RINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLI 193 (220)
T ss_pred HhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence 21 257999999999999999999998765443
No 111
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.76 E-value=1.4e-17 Score=151.45 Aligned_cols=165 Identities=17% Similarity=0.128 Sum_probs=106.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|||||||+.++....+.. .+..|..+.....+..++ ..+.+|||||..... .+...++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~ 72 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RLRPLSYPQ 72 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-cCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh--------hhhhhhcCC
Confidence 479999999999999999998766532 333344333333344444 567899999975431 122223433
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcCC-
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMGP- 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~- 390 (435)
++++++|+|++++ .++++.. .|+..+....++.|+++|+||+|+.+.........+ ..........+....+
T Consensus 73 -~d~~ilv~d~~~~--~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 149 (174)
T cd01871 73 -TDVFLICFSLVSP--ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA 149 (174)
T ss_pred -CCEEEEEEECCCH--HHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 5999999999853 5666653 477777766567899999999999643210000000 0001112223333223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.+++++||++|+|++++|+.+.+.
T Consensus 150 ~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 150 VKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cEEEEecccccCCHHHHHHHHHHh
Confidence 478999999999999999998763
No 112
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.76 E-value=1.4e-17 Score=153.25 Aligned_cols=169 Identities=18% Similarity=0.124 Sum_probs=108.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|+|||||++++.+..+... +..|..+.....+..++ ..+.+|||||...... +...++ .
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~-~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--------l~~~~~-~ 70 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV-YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR--------LRSLSY-A 70 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc-cCCcceeeeEEEEEECCEEEEEEEEECCCChhccc--------cccccc-c
Confidence 3799999999999999999998765322 22232222223333444 5689999999854321 111222 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhh---hHHHHHHHhhhhc-CC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDE---DSEHLEMASYRKM-GP 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~ 390 (435)
.++++++|+|+++. .+++... .|+..+....++.|+++|+||+|+............. .........+... ..
T Consensus 71 ~a~~~ilv~dv~~~--~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 148 (189)
T cd04134 71 DTDVIMLCFSVDSP--DSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINA 148 (189)
T ss_pred CCCEEEEEEECCCH--HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 35899999999954 4565553 4788888766689999999999997643211000000 0001111222222 23
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+++++||++|.|++++|+++.+.+...
T Consensus 149 ~~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 149 LRYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred CEEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 5799999999999999999999887643
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.76 E-value=2.1e-17 Score=146.18 Aligned_cols=155 Identities=19% Similarity=0.150 Sum_probs=108.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|++|+|||||++++++... ...+..++.+.....+..++ ..+.+|||||.... ..+....+..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~- 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF--------SAMRDLYIRQ- 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH--------HHHHHHHHhc-
Confidence 489999999999999999987763 44555566665555565553 56889999997542 1222333333
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.+++++|+|+++ ..+..+...+...+..... +.|+++|+||+|+....... ......+......+++
T Consensus 71 ~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 71 GDGFILVYSITD--RESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVS---------KEEGKALAKEWGCPFI 139 (160)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceec---------HHHHHHHHHHcCCcEE
Confidence 489999999984 3455666667777766543 79999999999998633111 0112222222235899
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 037423 395 RVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~ 414 (435)
++||++|.|+++++++|.+.
T Consensus 140 ~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 140 ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EeccCCCCCHHHHHHHHHhh
Confidence 99999999999999999864
No 114
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.76 E-value=5e-17 Score=148.87 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=103.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|.+|+|||||++++....+. . + ..|.+.....+..++..+.+|||||... +..+...++.+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~-~-~pt~g~~~~~~~~~~~~~~i~D~~Gq~~--------~~~~~~~~~~~ 84 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDK--------IRPLWRHYFQN 84 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-c-c-cCCcceeEEEEEECCEEEEEEECCCCHH--------HHHHHHHHhcc
Confidence 4578999999999999999999865542 2 2 2233333445666788899999999732 22233334444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHH--hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh--cCCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKE--RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--MGPD 391 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~--~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 391 (435)
+|++++|+|+++. .+..+...++..+.. ...+.|+++|+||+|+.+.... ++ ......... ....
T Consensus 85 -a~~iI~V~D~s~~--~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~----~~----~~~~l~l~~~~~~~~ 153 (181)
T PLN00223 85 -TQGLIFVVDSNDR--DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNA----AE----ITDKLGLHSLRQRHW 153 (181)
T ss_pred -CCEEEEEEeCCcH--HHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCH----HH----HHHHhCccccCCCce
Confidence 4899999999854 334443333443322 1246899999999998754311 11 111111111 1112
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.++++||++|+||++++++|.+.+..
T Consensus 154 ~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 154 YIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 45689999999999999999887654
No 115
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.76 E-value=7.9e-17 Score=148.33 Aligned_cols=168 Identities=23% Similarity=0.305 Sum_probs=111.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC--CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc--hhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK--PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD--EDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~--~~~~~ie~~~~ 310 (435)
...++|+++|.+|+|||||++++++.+ ..+++.+++|++.....+ +..+.+|||||+..... ..+..+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 356889999999999999999999864 356677788877654332 46799999999754321 12233334444
Q ss_pred HHHhcCC--cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 311 AVLTHLP--TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 311 ~~l~~~~--d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.++.+.. +++++|+|++. +.+..+.. +...+... +.|+++|+||+|+.+.... ......+......
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~--~~~~~~~~-i~~~l~~~--~~~~iiv~nK~Dl~~~~~~-------~~~~~~i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRH--PLKELDLQ-MIEWLKEY--GIPVLIVLTKADKLKKGER-------KKQLKKVRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCC--CCCHHHHH-HHHHHHHc--CCcEEEEEECcccCCHHHH-------HHHHHHHHHHHHh
Confidence 4444432 56888889773 34444432 34444443 7899999999999754311 1111112222222
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
...+++++||++|.|++++++.|.+.+.+
T Consensus 167 ~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 13579999999999999999999988754
No 116
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=7.7e-17 Score=146.70 Aligned_cols=168 Identities=23% Similarity=0.295 Sum_probs=123.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC--CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCC--CCchhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK--PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQ--RRDEDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~--~~~~~~~~ie~~~~ 310 (435)
...+.|+++|++|||||||+|+|++.+ +.++..||.|+-+....+. + .+.++|.||..- .+.+.++.+.....
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 367899999999999999999999977 6899999999988765543 3 378999999754 33445666666666
Q ss_pred HHHhcCC--cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-
Q 037423 311 AVLTHLP--TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK- 387 (435)
Q Consensus 311 ~~l~~~~--d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 387 (435)
.++.... .++++++|+. .+....|+. +++.+... +.|+++|+||+|.++..+.. +......+...
T Consensus 99 ~YL~~R~~L~~vvlliD~r--~~~~~~D~e-m~~~l~~~--~i~~~vv~tK~DKi~~~~~~-------k~l~~v~~~l~~ 166 (200)
T COG0218 99 EYLEKRANLKGVVLLIDAR--HPPKDLDRE-MIEFLLEL--GIPVIVVLTKADKLKKSERN-------KQLNKVAEELKK 166 (200)
T ss_pred HHHhhchhheEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCeEEEEEccccCChhHHH-------HHHHHHHHHhcC
Confidence 7775543 4578889976 567776775 77777775 89999999999998765221 11112221111
Q ss_pred cCCCc--EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 388 MGPDG--AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 388 ~~~~~--~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
..... ++..|+.++.|++++...|.+.+..
T Consensus 167 ~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 167 PPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 11112 7889999999999999999988754
No 117
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.75 E-value=2.3e-17 Score=153.05 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=108.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|+|||||++++++..+. ..+..|+.+.....+.+++ ..+.+|||||...... ....++ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~-~~ 70 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE-PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA--------MRKLSI-QN 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH--------HHHHHh-hc
Confidence 4899999999999999999987653 3344555555555566666 5688999999854321 112223 33
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
+|++++|+|++ +..+.++...|+..+.+.. .+.|+++|+||+|+........ . .. ...........+++
T Consensus 71 ad~vilv~d~~--~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~---~--~~--~~~~~~~~~~~~~~ 141 (198)
T cd04147 71 SDAFALVYAVD--DPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVP---A--KD--ALSTVELDWNCGFV 141 (198)
T ss_pred CCEEEEEEECC--CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccccccc---H--HH--HHHHHHhhcCCcEE
Confidence 58999999998 4456666666777776653 3689999999999875321110 0 00 00011111235789
Q ss_pred EcccCCCCCHHHHHHHHHHHHh
Q 037423 395 RVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++||++|.|++++++++.+.+.
T Consensus 142 ~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 142 ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999998765
No 118
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.75 E-value=2.8e-17 Score=150.54 Aligned_cols=165 Identities=18% Similarity=0.162 Sum_probs=102.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe---CCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL---GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..+|+++|.+|+|||||++++....+. ...|....+.....+.. .+..+.+|||||.... ..... .+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~-~~ 72 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL--------RPLWK-SY 72 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccceeEEEeeccCCCceEEEEEECCCcHhH--------HHHHH-HH
Confidence 457999999999999999999876553 22332222222222322 3467899999997432 11222 22
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
...++++++|+|+++. .+..+...++..+.... .++|+++|+||+|+...... ++ ................
T Consensus 73 ~~~~d~ii~v~D~~~~--~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~----~~-~~~~~~~~~~~~~~~~ 145 (183)
T cd04152 73 TRCTDGIVFVVDSVDV--ERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV----SE-VEKLLALHELSASTPW 145 (183)
T ss_pred hccCCEEEEEEECCCH--HHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH----HH-HHHHhCccccCCCCce
Confidence 3445899999998843 33444444555554322 36899999999998643210 01 0110111111111124
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|+|+++++++|.+.+...
T Consensus 146 ~~~~~SA~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 146 HVQPACAIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred EEEEeecccCCCHHHHHHHHHHHHHHH
Confidence 688999999999999999999887543
No 119
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=161.38 Aligned_cols=168 Identities=31% Similarity=0.468 Sum_probs=124.7
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC--
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL-- 316 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~-- 316 (435)
|+++|.||+|||||++.++.+++.+++|||||..+..+.+.. .+.+|++-|.||+.+...+... +...+++|.
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G----LG~~FLrHIER 237 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVG----LGLRFLRHIER 237 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCC----ccHHHHHHHHh
Confidence 899999999999999999999999999999999999998886 4567999999999988765432 456667665
Q ss_pred CcEEEEEEeCCCCCCCC-HHHHHHHHHHHHHh---cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 317 PTAILFVHDLSGECGTS-PSDQFTIYKEIKER---FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s-~~~~~~l~~~l~~~---~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+.++++|+|++...+.. .++...+..++..+ +.++|.++|+||+|+....+ ++......+... .....
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e------~~~~~~~~l~~~--~~~~~ 309 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE------ELEELKKALAEA--LGWEV 309 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHH------HHHHHHHHHHHh--cCCCc
Confidence 36799999999655432 45555566666654 35799999999999765431 111111111111 11112
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.++|||.+++|+++|...+.+.+....
T Consensus 310 ~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 310 FYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 233999999999999999999987764
No 120
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.75 E-value=4.2e-17 Score=147.88 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=97.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCc---------------cccCCceeeeeeEEEEEe-----CCceEEEEeCCCCCCCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPE---------------VCNYPFTTRGILMGHINL-----GYQNFQITDTPGLLQRR 298 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~---------------v~~~~~tT~~~~~~~~~~-----~~~~~~liDTpG~~~~~ 298 (435)
.|+++|++|+|||||++++++.... .....++|.......+.+ .+..+.+|||||+.+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999863210 011123343332222322 34568899999996532
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHH
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
.....++.. +|++++|+|++ .+.+.++...|.. +.. .+.|+++|+||+|+..... .+ .
T Consensus 82 --------~~~~~~~~~-ad~~i~v~D~~--~~~~~~~~~~~~~-~~~--~~~~iiiv~NK~Dl~~~~~-----~~---~ 139 (179)
T cd01890 82 --------YEVSRSLAA-CEGALLLVDAT--QGVEAQTLANFYL-ALE--NNLEIIPVINKIDLPSADP-----ER---V 139 (179)
T ss_pred --------HHHHHHHHh-cCeEEEEEECC--CCccHhhHHHHHH-HHH--cCCCEEEEEECCCCCcCCH-----HH---H
Confidence 223334444 48999999998 3455555554433 333 3789999999999864320 01 1
Q ss_pred HHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 379 HLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
...+.........+++++||++|.|++++++++.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 140 KQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 1112222222223589999999999999999998765
No 121
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=7.4e-17 Score=151.23 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++++..+.....+....+.....+.+++ ..+.+|||||.... ..+....+.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~--------~~~~~~~~~ 77 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESF--------RSITRSYYR 77 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHHHHHhc
Confidence 46899999999999999999998766433333333343344444544 45789999997432 223333443
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++. .+++....|+..+.... .+.|+++|+||+|+....... ......+....+.++
T Consensus 78 ~-ad~~vlv~D~~~~--~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~ 145 (210)
T PLN03108 78 G-AAGALLVYDITRR--ETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS---------TEEGEQFAKEHGLIF 145 (210)
T ss_pred c-CCEEEEEEECCcH--HHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC---------HHHHHHHHHHcCCEE
Confidence 3 5899999999843 45666666777666543 468999999999997643211 011222223334689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||+++.|++++|+++.+.+..
T Consensus 146 ~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 146 MEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999877644
No 122
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.1e-17 Score=173.24 Aligned_cols=164 Identities=21% Similarity=0.253 Sum_probs=130.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-c
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-H 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~ 315 (435)
..+++++|.||||||||.|++++.+..++++||+|.+...+.+.+.+.++.++|.||...-... ..=|..+..++. +
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~--S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY--SEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC--CchHHHHHHHHhcC
Confidence 3569999999999999999999999999999999999999999999999999999998765432 222556666665 5
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.+|+++-|+|+++ .+....+.-++.+. +.|+|+++|++|..+........ ..+ .+.-+.|+++
T Consensus 81 ~~D~ivnVvDAtn-----LeRnLyltlQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~-------~~L---~~~LGvPVv~ 143 (653)
T COG0370 81 KPDLIVNVVDATN-----LERNLYLTLQLLEL--GIPMILALNMIDEAKKRGIRIDI-------EKL---SKLLGVPVVP 143 (653)
T ss_pred CCCEEEEEcccch-----HHHHHHHHHHHHHc--CCCeEEEeccHhhHHhcCCcccH-------HHH---HHHhCCCEEE
Confidence 5799999999984 33333456667776 89999999999998765432211 111 2223579999
Q ss_pred cccCCCCCHHHHHHHHHHHHhccc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+||++|+|++++++.+.+......
T Consensus 144 tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 144 TVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred EEeecCCCHHHHHHHHHHhccccc
Confidence 999999999999999998776654
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.75 E-value=4.5e-17 Score=149.50 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=104.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|++|+|||||++++.+..+. .+ ..|.......+.+++..+.+|||||.... ......++.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~--~~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~~--------~~~~~~~~~ 85 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA--QH-VPTLHPTSEELTIGNIKFKTFDLGGHEQA--------RRLWKDYFP 85 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccCcceEEEEECCEEEEEEECCCCHHH--------HHHHHHHhc
Confidence 35688999999999999999999876642 12 23444555677778889999999997421 122233444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh------
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR------ 386 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------ 386 (435)
. ++++++|+|+++. .+......++..+... ..+.|+++|+||+|+...... .+........
T Consensus 86 ~-ad~iilV~D~~~~--~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 154 (190)
T cd00879 86 E-VDGIVFLVDAADP--ERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSE--------EELRQALGLYGTTTGK 154 (190)
T ss_pred c-CCEEEEEEECCcH--HHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCH--------HHHHHHhCcccccccc
Confidence 4 4889999999843 2333334455555432 246899999999998643211 1111111100
Q ss_pred -------hcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 387 -------KMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 387 -------~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.....+++++||++|+|++++++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 155 GVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 0122468999999999999999999875
No 124
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=5e-17 Score=146.33 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=106.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|+|||||++++.+..+. ..+..|+.+.....+.+++ ..+.+|||||..+... +....+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~- 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA--------MRELYIK- 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh--------hhHHHHh-
Confidence 47999999999999999999877653 2344444444344444444 5678999999865321 2222233
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCc
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDG 392 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 392 (435)
.++++++|+|+++ ..+.+....|...+.... .+.|+++|+||+|+........ .....+... ...+
T Consensus 72 ~~~~~vlv~~~~~--~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~---------~~~~~~~~~~~~~~ 140 (168)
T cd04177 72 SGQGFLLVYSVTS--EASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR---------EDGVSLSQQWGNVP 140 (168)
T ss_pred hCCEEEEEEECCC--HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCH---------HHHHHHHHHcCCce
Confidence 3488999999984 456667767777776532 4689999999999875432110 011111112 2257
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++++||++|.|++++++++...+
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 125
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.9e-17 Score=147.16 Aligned_cols=164 Identities=20% Similarity=0.174 Sum_probs=122.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+++++|..+|||||||++++.+.+.....+..-.|+....+.+.+ .++++|||+|+.+. ..+.-.++
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERF--------rslipsY~ 92 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--------RSLIPSYI 92 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHH--------hhhhhhhc
Confidence 457899999999999999999998887655555555666666666665 57899999999653 23344445
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
+. +.++++|+|+++ .-++++...|++.+..... +.-+++|+||.||.+..+..... ....+...+.
T Consensus 93 Rd-s~vaviVyDit~--~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eE---------g~~kAkel~a 160 (221)
T KOG0094|consen 93 RD-SSVAVIVYDITD--RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEE---------GERKAKELNA 160 (221)
T ss_pred cC-CeEEEEEEeccc--cchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHH---------HHHHHHHhCc
Confidence 44 488999999995 4788888899999987642 24577899999999876432211 1111222345
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.++++||+.|.||.++|..|...+....
T Consensus 161 ~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 161 EFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred EEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 7999999999999999999999887653
No 126
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.75 E-value=4.1e-17 Score=146.02 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=98.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|.+|+|||||++++....+. ...| |.+.....+......+.+|||||.... ......++.. +|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~~-ad 69 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI--------RPLWRHYFQN-TQ 69 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCHhH--------HHHHHHHhcC-CC
Confidence 6899999999999999999766553 2222 233333345567788999999998431 2223334444 49
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHH--hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKE--RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~--~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
+++||+|+++. .+..+...++..+.. ...+.|+++|+||+|+.+.... .+.... ...... ......++++
T Consensus 70 ~~i~v~D~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~~-~~~~~~-~~~~~~~~~~ 141 (159)
T cd04150 70 GLIFVVDSNDR--ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA----AEVTDK-LGLHSL-RNRNWYIQAT 141 (159)
T ss_pred EEEEEEeCCCH--HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH----HHHHHH-hCcccc-CCCCEEEEEe
Confidence 99999999854 344444444544432 1235899999999999653210 111111 011111 1122357899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~ 413 (435)
||++|.|+++++++|.+
T Consensus 142 Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 142 CATSGDGLYEGLDWLSN 158 (159)
T ss_pred eCCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 127
>PLN03118 Rab family protein; Provisional
Probab=99.75 E-value=6.1e-17 Score=151.68 Aligned_cols=164 Identities=20% Similarity=0.147 Sum_probs=106.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+. ...+.++.+.....+..++ ..+.+|||||..... .+...++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR--------TLTSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHHH
Confidence 3578999999999999999999876642 1122222333334444444 567999999985432 2233344
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHH-HHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFT-IYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~-l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.. .+++++|+|+++. .++++... |...+.... .+.|+++|+||+|+........ .....+.....
T Consensus 84 ~~-~d~~vlv~D~~~~--~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~---------~~~~~~~~~~~ 151 (211)
T PLN03118 84 RN-AQGIILVYDVTRR--ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSR---------EEGMALAKEHG 151 (211)
T ss_pred hc-CCEEEEEEECCCH--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCH---------HHHHHHHHHcC
Confidence 44 4899999999843 45555543 444443321 3578999999999975432110 11111222234
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
.+++++||++|.|+++++++|.+.+.....
T Consensus 152 ~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~ 181 (211)
T PLN03118 152 CLFLECSAKTRENVEQCFEELALKIMEVPS 181 (211)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 579999999999999999999988865543
No 128
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=4.9e-17 Score=151.34 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=106.5
Q ss_pred ecCCCCChhhHHHHhhCCCCccccCCcee-eeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 243 VGAPNVGKSSLVRVISTGKPEVCNYPFTT-RGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 243 ~G~~~~GKssl~~~l~~~~~~v~~~~~tT-~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
+|.+|||||||+++++...+.. .+..|. .+.....+.++ ...+.+|||||..... .+...++. .+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~-~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~--------~l~~~~~~-~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG--------GLRDGYYI-QGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhh--------hhhHHHhc-CCCE
Confidence 6999999999999999766532 222221 23333333333 4678999999985421 22333444 4589
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccC
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVM 399 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~ 399 (435)
+++|+|+++ ..+++....|+.++.....+.|+++|+||+|+.... .. . .. ..+......+++++||+
T Consensus 71 ~ilV~D~t~--~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~-v~---~---~~----~~~~~~~~~~~~e~SAk 137 (200)
T smart00176 71 AIIMFDVTA--RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK-VK---A---KS----ITFHRKKNLQYYDISAK 137 (200)
T ss_pred EEEEEECCC--hHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc-CC---H---HH----HHHHHHcCCEEEEEeCC
Confidence 999999994 466777778999998876689999999999986422 11 0 11 12333345689999999
Q ss_pred CCCCHHHHHHHHHHHHhcc
Q 037423 400 NEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 400 ~g~GI~eL~~~i~~~l~~~ 418 (435)
+|+||+++|+++.+.+...
T Consensus 138 ~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 138 SNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 9999999999999877553
No 129
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=5.5e-17 Score=144.47 Aligned_cols=154 Identities=18% Similarity=0.208 Sum_probs=96.7
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|++|+|||||++++...... ... .|.+.....+.+.+..+.+|||||.... ......++. .++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~-~~~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTI--PTIGFNVETVTYKNLKFQVWDLGGQTSI--------RPYWRCYYS-NTD 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcC--CccCcCeEEEEECCEEEEEEECCCCHHH--------HHHHHHHhc-CCC
Confidence 4899999999999999999765542 222 2333334455667788999999998532 122333343 358
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHH-HHH-hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHH-hhhhcCCCcEEE
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKE-IKE-RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMA-SYRKMGPDGAIR 395 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~-l~~-~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 395 (435)
++++|+|+++. .+......++.. +.. ...++|+++|+||+|+.+.... .+... .+. ........++++
T Consensus 69 ~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----~~i~~---~~~~~~~~~~~~~~~~ 139 (158)
T cd04151 69 AIIYVVDSTDR--DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE----AEISE---KLGLSELKDRTWSIFK 139 (158)
T ss_pred EEEEEEECCCH--HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH----HHHHH---HhCccccCCCcEEEEE
Confidence 99999999843 222222222322 222 1246899999999998754210 11100 110 011111236999
Q ss_pred cccCCCCCHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~ 413 (435)
+||++|.|++++++++.+
T Consensus 140 ~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 140 TSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred eeccCCCCHHHHHHHHhc
Confidence 999999999999999865
No 130
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.75 E-value=8.3e-17 Score=146.37 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=102.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|.+|+|||||++++....+. ...| |.+.....+..+...+.+|||||.... ......++..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~--------~~~~~~~~~~ 80 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIP--TIGFNVETVTYKNISFTVWDVGGQDKI--------RPLWRHYYTN 80 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCC--ccccceEEEEECCEEEEEEECCCChhh--------HHHHHHHhCC
Confidence 4578999999999999999999755542 2222 333333345567788999999998532 1223333444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
++++++|+|++++ .+..+...++..+... ..+.|+++|+||+|+.+.... .+.... ..... .......+
T Consensus 81 -ad~ii~v~D~t~~--~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~~-~~~~~-~~~~~~~~ 151 (175)
T smart00177 81 -TQGLIFVVDSNDR--DRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA----AEITEK-LGLHS-IRDRNWYI 151 (175)
T ss_pred -CCEEEEEEECCCH--HHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH----HHHHHH-hCccc-cCCCcEEE
Confidence 5899999999854 3444444455554321 246899999999999654211 111110 01111 11122346
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++||++|.|+++++++|.+.+
T Consensus 152 ~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 152 QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998865
No 131
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.75 E-value=8.6e-17 Score=147.36 Aligned_cols=163 Identities=16% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|++|||||||++++....+. . +.. |.......+..++..+.+|||||... ...+...++..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~-~-~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~~ 84 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV-T-TIP-TIGFNVETVEYKNLKFTMWDVGGQDK--------LRPLWRHYYQN 84 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc-c-cCC-ccccceEEEEECCEEEEEEECCCCHh--------HHHHHHHHhcC
Confidence 4578999999999999999999765542 2 222 33343445666778899999999843 22233334444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHH--hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKE--RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~--~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+|++++|+|+++. .+..+...++..+.. ...+.|+++|+||+|+.+.... .+.... ... .........+
T Consensus 85 -ad~iI~v~D~t~~--~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~~-l~~-~~~~~~~~~~ 155 (182)
T PTZ00133 85 -TNGLIFVVDSNDR--ERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST----TEVTEK-LGL-HSVRQRNWYI 155 (182)
T ss_pred -CCEEEEEEeCCCH--HHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH----HHHHHH-hCC-CcccCCcEEE
Confidence 5899999999853 234444334444322 1245899999999998653211 011010 000 1111112356
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|+++++++|.+.+...
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999877654
No 132
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.75 E-value=5.7e-17 Score=155.75 Aligned_cols=157 Identities=17% Similarity=0.149 Sum_probs=109.2
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||++++++..+.. .+.+|+.+.....+.+++ ..+.||||+|..... .....++. .
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~-~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~--------~~~~~~~~-~ 71 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE-QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP--------AMRRLSIL-T 71 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC-CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh--------HHHHHHhc-c
Confidence 69999999999999999998776643 445555555555556665 457799999975422 11111222 3
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh----------cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKER----------FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR 386 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~----------~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
+|++++|+|+++ ..++++...|+..+... ..+.|+|+|+||+|+....... ...+.++.
T Consensus 72 ad~iIlVfdv~~--~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~---------~~ei~~~~ 140 (247)
T cd04143 72 GDVFILVFSLDN--RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ---------RDEVEQLV 140 (247)
T ss_pred CCEEEEEEeCCC--HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC---------HHHHHHHH
Confidence 589999999994 45677777777777642 2468999999999997532211 01122221
Q ss_pred h-cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 387 K-MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 387 ~-~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
. ....+++++||++|.|+++++++|.+...
T Consensus 141 ~~~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 141 GGDENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred HhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 1 12357999999999999999999998763
No 133
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=7.7e-17 Score=160.06 Aligned_cols=169 Identities=24% Similarity=0.279 Sum_probs=128.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-CceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-YQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+.|+++|++|+|||||+|++++....+.+..|+|.++....+.++ +..+.+.||-|+.+.-+..--..++.++...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 467899999999999999999999988888999999999999998887 5889999999998876654444445555555
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.+. |++++|+|+|++ ...+........+.+.. ...|+|+|+||+|++..... ...+... . ..
T Consensus 270 ~~a-DlllhVVDaSdp--~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~----------~~~~~~~---~-~~ 332 (411)
T COG2262 270 KEA-DLLLHVVDASDP--EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI----------LAELERG---S-PN 332 (411)
T ss_pred hcC-CEEEEEeecCCh--hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh----------hhhhhhc---C-CC
Confidence 554 999999999954 33344443444455542 46899999999998865410 0111111 1 15
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
.+++||++|.|++.|++.|.+.+.....
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~~~~ 360 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSGLRT 360 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhhccc
Confidence 8999999999999999999998875543
No 134
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=5.8e-17 Score=145.69 Aligned_cols=159 Identities=19% Similarity=0.147 Sum_probs=103.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+++++|.+|+|||||++++.+..+. ..++.+..+. .....+ ...++.+|||||..... ......+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~--------~~~~~~~~~- 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDR--------ANLAAEIRK- 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhh--------HHHhhhccc-
Confidence 6899999999999999999877653 2233332221 111222 34678999999985421 112223333
Q ss_pred CcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHH-HhhhhcCCCcEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM-ASYRKMGPDGAI 394 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i 394 (435)
++++++|+|+++ +.++++.. .|+..+.....+.|+++|+||+|+.+..... ........+ ..+.. ..+++
T Consensus 71 ad~~ilv~d~~~--~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~--~~~~~ 142 (166)
T cd01893 71 ANVICLVYSVDR--PSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA----GLEEEMLPIMNEFRE--IETCV 142 (166)
T ss_pred CCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh----HHHHHHHHHHHHHhc--ccEEE
Confidence 589999999984 45566543 4777777655678999999999997654211 000111111 11211 13699
Q ss_pred EcccCCCCCHHHHHHHHHHHHh
Q 037423 395 RVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++||++|.|++++++.+.+.+.
T Consensus 143 e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 143 ECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred EeccccccCHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 135
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=6.7e-17 Score=147.46 Aligned_cols=156 Identities=21% Similarity=0.299 Sum_probs=103.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC--CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch--hhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK--PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE--DRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~ie~~~~ 310 (435)
.+.++|+++|++|+|||||+|++++.. ..+++.+++|.+...... + ..+.+|||||+...... .+..+.....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 456899999999999999999999865 356677888887654433 2 37899999998653221 1223333333
Q ss_pred HHHhcC--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 311 AVLTHL--PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 311 ~~l~~~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.++... .+++++|+|++ .+.+..+.. ++..+... ++|+++|+||+|+...... ......+......
T Consensus 93 ~~l~~~~~~~~ii~vvd~~--~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~~~~~~~-------~~~~~~i~~~l~~ 160 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIR--HPLKELDLE-MLEWLRER--GIPVLIVLTKADKLKKSEL-------NKQLKKIKKALKK 160 (179)
T ss_pred HHHHhChhhcEEEEEecCC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECcccCCHHHH-------HHHHHHHHHHHhh
Confidence 444432 37899999988 456666653 45555543 7899999999999754311 1112222222222
Q ss_pred --CCCcEEEcccCCCCCHH
Q 037423 389 --GPDGAIRVSVMNEEGLN 405 (435)
Q Consensus 389 --~~~~~i~vSA~~g~GI~ 405 (435)
...+++++||++|+|++
T Consensus 161 ~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 DADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCCceEEEECCCCCCCC
Confidence 12479999999999974
No 136
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.74 E-value=3.3e-17 Score=148.29 Aligned_cols=164 Identities=18% Similarity=0.109 Sum_probs=106.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|+|||||++++....+. ..++.|+.+.....+..++ ..+.+|||||...... ....++ .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~-~ 70 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK--------LRPLCY-P 70 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc--------cccccc-C
Confidence 36899999999999999999876553 3455666555545555554 5678999999854321 111122 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCcccc---chhhhHHHHHHHhhhhcCC-
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYV---TEDEDSEHLEMASYRKMGP- 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 390 (435)
.++++++|+|++++ .+++... .|+..+.....+.|+++|+||+|+......... ..+..........+....+
T Consensus 71 ~a~~~i~v~d~~~~--~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 148 (173)
T cd04130 71 DTDVFLLCFSVVNP--SSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGA 148 (173)
T ss_pred CCcEEEEEEECCCH--HHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCC
Confidence 35899999999844 4565553 477777765567999999999999753210000 0000001112223333323
Q ss_pred CcEEEcccCCCCCHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
.+++++||++|.|++++++.+.-
T Consensus 149 ~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 149 CEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHh
Confidence 37999999999999999988753
No 137
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.74 E-value=1e-16 Score=145.74 Aligned_cols=162 Identities=19% Similarity=0.123 Sum_probs=108.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|+|||||++++++..+.. .+.+|+.......+..++ ..+.+|||||..+.. ......+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~- 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVE-SYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS--------ILPQKYSI- 71 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcc-ccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH--------HHHHHHHh-
Confidence 479999999999999999999776533 233344433334444544 456899999985321 12222233
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
..+++++|+|+++ ..+.+....++..+.+.. .+.|+++|+||+|+........ .....+......++
T Consensus 72 ~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 140 (180)
T cd04137 72 GIHGYILVYSVTS--RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVST---------EEGKELAESWGAAF 140 (180)
T ss_pred hCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCH---------HHHHHHHHHcCCeE
Confidence 3488999999984 455666666666666543 3579999999999875331110 01111122223579
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+++||++|.|++++++++.+.+.....
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 141 LESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998876544
No 138
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.74 E-value=7.3e-17 Score=143.30 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=101.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|.+|+|||||++++++.... .+ ..|.......+.+.+..+.+|||||..... .....++.. .+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~~-~~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--TT-IPTIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWKHYYEN-TN 68 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--CC-CCCcCcceEEEEECCEEEEEEECCCChhhH--------HHHHHHhcc-CC
Confidence 4899999999999999999977631 12 234444455566778899999999985421 122333333 48
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh-hhcCCCcEEE
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY-RKMGPDGAIR 395 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~ 395 (435)
++++|+|++.. .+......++..+... ..+.|+++|+||+|+...... .+. ....... ......++++
T Consensus 69 ~~i~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~ 139 (158)
T cd00878 69 GIIFVVDSSDR--ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV----SEL---IEKLGLEKILGRRWHIQP 139 (158)
T ss_pred EEEEEEECCCH--HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH----HHH---HHhhChhhccCCcEEEEE
Confidence 99999999843 3344444455544442 247899999999998764311 011 1111111 1122357999
Q ss_pred cccCCCCCHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~ 413 (435)
+||++|.|+++++++|.+
T Consensus 140 ~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 140 CSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred eeCCCCCCHHHHHHHHhh
Confidence 999999999999999864
No 139
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.74 E-value=4.2e-17 Score=144.99 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=97.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
+|+++|.+|+|||||++++.+..+. ...| |.......+.. ....+.+|||||.... .......+.. +
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~~~-~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEKM--------RTVWKCYLEN-T 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHhH--------HHHHHHHhcc-C
Confidence 4789999999999999999977652 1222 22222233333 3467999999998432 1222233333 4
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
+++++|+|+++. .+......++..+... ..+.|+++|+||+|+...... .+.. .......+......++++
T Consensus 69 ~~iv~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~-~~~~~~~~~~~~~~~~~~ 141 (160)
T cd04156 69 DGLVYVVDSSDE--ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTA----EEIT-RRFKLKKYCSDRDWYVQP 141 (160)
T ss_pred CEEEEEEECCcH--HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCH----HHHH-HHcCCcccCCCCcEEEEe
Confidence 899999999843 3444444445544332 147899999999998643211 1110 000111222222346899
Q ss_pred cccCCCCCHHHHHHHHHH
Q 037423 396 VSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~ 413 (435)
+||++|+|+++++++|.+
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 999999999999999864
No 140
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=9.9e-17 Score=145.97 Aligned_cols=160 Identities=15% Similarity=0.119 Sum_probs=105.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccc----------------cCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVC----------------NYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDR 302 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~----------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 302 (435)
+|+++|.+|+|||||+|.+++...... ...++|.+.....+.+.+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 389999999999999999986543221 12345555555666667788999999998532
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHH-
Q 037423 303 NNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLE- 381 (435)
Q Consensus 303 ~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~- 381 (435)
......++.. +|++++|+|++. +....... ++..+.. .+.|+++|+||+|+....... ........
T Consensus 76 ---~~~~~~~~~~-~d~~i~v~d~~~--~~~~~~~~-~~~~~~~--~~~~i~iv~nK~D~~~~~~~~----~~~~~~~~~ 142 (189)
T cd00881 76 ---SSEVIRGLSV-SDGAILVVDANE--GVQPQTRE-HLRIARE--GGLPIIVAINKIDRVGEEDLE----EVLREIKEL 142 (189)
T ss_pred ---HHHHHHHHHh-cCEEEEEEECCC--CCcHHHHH-HHHHHHH--CCCCeEEEEECCCCcchhcHH----HHHHHHHHH
Confidence 1223333333 489999999884 44444443 4444544 379999999999998633111 11111111
Q ss_pred HHhhh----------hcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 382 MASYR----------KMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 382 ~~~~~----------~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+.... .....+++++||++|.|++++++++.+.+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 11110 123468999999999999999999998763
No 141
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6e-17 Score=144.06 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=118.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceee--eeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTR--GILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~--~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
..+++.++|..|||||+|+.+++..++..-.. .|. +.....+.+++ .++++|||+|+.. +...+..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~~id~k~IKlqiwDtaGqe~--------frsv~~s 74 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMVTIDGKQIKLQIWDTAGQES--------FRSVTRS 74 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEEEEcCceEEEEEEecCCcHH--------HHHHHHH
Confidence 45789999999999999999999887743222 343 33333344444 6789999999954 2334455
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
++++. .++|+|+|++ +..++..+..|+..++... ++.-+++++||+||.....+. .++-..|+...+
T Consensus 75 yYr~a-~GalLVydit--~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs---------~EEGeaFA~ehg 142 (216)
T KOG0098|consen 75 YYRGA-AGALLVYDIT--RRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVS---------KEEGEAFAREHG 142 (216)
T ss_pred HhccC-cceEEEEEcc--chhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccccc---------HHHHHHHHHHcC
Confidence 55554 6789999999 4577888888999999884 788899999999998776443 234455666667
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
..++++||++++||+|.|......+
T Consensus 143 LifmETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 143 LIFMETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred ceeehhhhhhhhhHHHHHHHHHHHH
Confidence 7889999999999999998777654
No 142
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.74 E-value=1e-16 Score=151.40 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=109.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|||||+|++++.+..+.. .+.+|..+.....+.+++ ..+.+|||+|.... ..+...++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~-~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~--------~~l~~~~~~- 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG-SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY--------DNVRPLAYP- 71 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-ccCCccccceEEEEEECCEEEEEEEEeCCCcHHH--------HHHhHHhcc-
Confidence 479999999999999999999876643 343444333333444544 56788999998432 222223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhh---hHHHHHHHhhhhcCC-
Q 037423 316 LPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDE---DSEHLEMASYRKMGP- 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~~~- 390 (435)
..|++++|+|+++ ..+++.. ..|..++....++.|+|+|+||+|+...........+. .........++...+
T Consensus 72 ~~d~illvfdis~--~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 72 DSDAVLICFDISR--PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 3599999999994 4566665 35777777666789999999999996532110000000 001122333444444
Q ss_pred CcEEEcccCCCCC-HHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEG-LNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~G-I~eL~~~i~~~l~~ 417 (435)
.+++++||++++| |+++|+.+......
T Consensus 150 ~~y~E~SAk~~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 150 VSYVECSSRSSERSVRDVFHVATVASLG 177 (222)
T ss_pred CEEEEcCCCcCCcCHHHHHHHHHHHHHh
Confidence 4899999999985 99999999986543
No 143
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.74 E-value=1.1e-16 Score=145.25 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=101.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|++|+|||||++++....+.. . ..|.+.....+.+++..+.+|||||.... .......+.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~--~~t~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~~~- 81 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-T--SPTIGSNVEEIVYKNIRFLMWDIGGQESL--------RSSWNTYYT- 81 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-c--CCccccceEEEEECCeEEEEEECCCCHHH--------HHHHHHHhh-
Confidence 35789999999999999999998765431 2 23334444566677889999999998532 122223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.++++++|+|+++. .+......++..+... ..+.|+++|+||+|+...... ++.... ... ........++
T Consensus 82 ~~d~vi~V~D~s~~--~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~----~~i~~~-l~~-~~~~~~~~~~ 153 (174)
T cd04153 82 NTDAVILVIDSTDR--ERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTP----AEISES-LGL-TSIRDHTWHI 153 (174)
T ss_pred cCCEEEEEEECCCH--HHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCH----HHHHHH-hCc-ccccCCceEE
Confidence 35899999999843 3333333334444321 246899999999998653210 111110 000 0111123468
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~ 413 (435)
+++||++|.||++++++|.+
T Consensus 154 ~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 154 QGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EecccCCCCCHHHHHHHHhc
Confidence 99999999999999999864
No 144
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=6.3e-17 Score=177.04 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=120.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhh-hHH-HHHHHHHH-
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDR-NNL-EKLTLAVL- 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~-~~i-e~~~~~~l- 313 (435)
..+|+++|+||+|||||+|++++.+..+++++|+|.+...+.+.+++.++.++||||+.+...... ... |..+..++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~ 82 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHh
Confidence 457999999999999999999998888999999999999999998889999999999976432111 111 22233332
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
...+|++++|+|+++. ..+. .+...+.+. ++|+++|+||+|+.+..... .+.. .+.+..+.|+
T Consensus 83 ~~~aD~vI~VvDat~l----er~l-~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~-------id~~---~L~~~LG~pV 145 (772)
T PRK09554 83 SGDADLLINVVDASNL----ERNL-YLTLQLLEL--GIPCIVALNMLDIAEKQNIR-------IDID---ALSARLGCPV 145 (772)
T ss_pred ccCCCEEEEEecCCcc----hhhH-HHHHHHHHc--CCCEEEEEEchhhhhccCcH-------HHHH---HHHHHhCCCE
Confidence 2346999999999842 2233 355666665 79999999999987543211 1111 2222235689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||.+|+|++++++.+.+...
T Consensus 146 vpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 146 IPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred EEEEeecCCCHHHHHHHHHHhhh
Confidence 99999999999999999988764
No 145
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.74 E-value=3.1e-17 Score=140.45 Aligned_cols=162 Identities=16% Similarity=0.118 Sum_probs=124.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
++.+++|.+|||||+|+-++..+.+.-+....+-.|+....++++| .+++||||+|.... ..++.. +..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErF--------rtitst-yyr 79 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERF--------RTITST-YYR 79 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHH--------HHHHHH-Hcc
Confidence 4578999999999999999988766443332333567777777766 46799999998432 223333 344
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
..+++++|+|++ .+.++.+...|++++....+..|-++|+||.|+.....+. ......|+...+..+|+
T Consensus 80 gthgv~vVYDVT--n~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~---------t~dAr~~A~~mgie~FE 148 (198)
T KOG0079|consen 80 GTHGVIVVYDVT--NGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVD---------TEDARAFALQMGIELFE 148 (198)
T ss_pred CCceEEEEEECc--chhhhHhHHHHHHHHHhcCccccceecccCCCCccceeee---------hHHHHHHHHhcCchhee
Confidence 568999999999 5678899999999999988889999999999988765221 23345566666778999
Q ss_pred cccCCCCCHHHHHHHHHHHHhccc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+||+..+|++..|..|.+.+.+..
T Consensus 149 TSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 149 TSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hhhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999998775543
No 146
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.73 E-value=5.8e-17 Score=145.40 Aligned_cols=163 Identities=19% Similarity=0.158 Sum_probs=102.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|+|||||++++++........+ +..+........+ ...+.+|||||..+... ... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~--------~~~-~~~~ 70 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVP-TVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR--------LRP-LSYP 70 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------cch-hhcC
Confidence 3689999999999999999998765332222 2222222233333 35689999999865321 111 1223
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc---hhhhHHHHHHHhhhhcCC-
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT---EDEDSEHLEMASYRKMGP- 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 390 (435)
.+|++++|+|+++. .++.... .|+..+.....+.|+++|+||+|+.......... ..... ......+....+
T Consensus 71 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~ 147 (171)
T cd00157 71 NTDVFLICFSVDSP--SSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPIT-PEEGEKLAKEIGA 147 (171)
T ss_pred CCCEEEEEEECCCH--HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccC-HHHHHHHHHHhCC
Confidence 45899999999843 3444332 3677776665679999999999998765321100 00000 111122222222
Q ss_pred CcEEEcccCCCCCHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
.+++++||++|.|+++++++|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 38999999999999999999875
No 147
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.73 E-value=4.3e-17 Score=146.67 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=103.2
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
|+++|.+|||||||++++.+..+.. .+..| .+.....+..++..+.+|||||..... .+...++.. +++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~-~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~~~--------~~~~~~~~~-ad~ 70 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLE-SVVPT-TGFNSVAIPTQDAIMELLEIGGSQNLR--------KYWKRYLSG-SQG 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcc-ccccc-CCcceEEEeeCCeEEEEEECCCCcchh--------HHHHHHHhh-CCE
Confidence 7899999999999999999775532 22222 222334455667889999999985432 222334444 489
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccC
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVM 399 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~ 399 (435)
+++|+|+++. .+......|+..+.....+.|+++|+||+|+....... +. ........+....+.+++++||+
T Consensus 71 ii~V~D~t~~--~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~----~i-~~~~~~~~~~~~~~~~~~~~Sa~ 143 (164)
T cd04162 71 LIFVVDSADS--ERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQ----EI-HKELELEPIARGRRWILQGTSLD 143 (164)
T ss_pred EEEEEECCCH--HHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHH----HH-HHHhCChhhcCCCceEEEEeeec
Confidence 9999999853 34455555666665433679999999999986543211 11 11112233434445678889988
Q ss_pred C------CCCHHHHHHHHHH
Q 037423 400 N------EEGLNELKDRVYQ 413 (435)
Q Consensus 400 ~------g~GI~eL~~~i~~ 413 (435)
+ ++||+++|+.+..
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 9999999998764
No 148
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=5.6e-17 Score=146.68 Aligned_cols=160 Identities=18% Similarity=0.057 Sum_probs=105.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeee-eeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRG-ILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~-~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
+.++++++|.+|||||||++++.+..+.+..+.+|+.. .....+.+++ ..+.+|||+|...... +...+
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~--------~~~~~ 74 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL--------LNDAE 74 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc--------cchhh
Confidence 56789999999999999999999887653455555433 2233445555 4678999999864321 12223
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC-C
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP-D 391 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 391 (435)
+. .+|++++|+|++++ .+++....|+..+... .+.|+++|+||+|+.+...... .+ ...+....+ .
T Consensus 75 ~~-~~d~~llv~d~~~~--~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~--~~-------~~~~~~~~~~~ 141 (169)
T cd01892 75 LA-ACDVACLVYDSSDP--KSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYE--VQ-------PDEFCRKLGLP 141 (169)
T ss_pred hh-cCCEEEEEEeCCCH--HHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccc--cC-------HHHHHHHcCCC
Confidence 33 35999999999843 4455554566555332 3689999999999965432110 00 011111112 2
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.++++||++|.|++++++.+.+.+.
T Consensus 142 ~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 142 PPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CCEEEEeccCccHHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 149
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.73 E-value=9.5e-17 Score=144.86 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=104.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+++++|++|+|||||++++.+..+. ..+..+..+.....+..++. .+.+|||||...... ..... ...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~-~~~ 71 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR--------LRPLS-YPM 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc--------ccccc-CCC
Confidence 6999999999999999999877653 23334444444344555554 467899999855321 11112 233
Q ss_pred CcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc---hhhhHHHHHHHhhhh-cCCC
Q 037423 317 PTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT---EDEDSEHLEMASYRK-MGPD 391 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~ 391 (435)
.+++++|+|++++ .++++.. .|...+.....+.|+++|+||+|+.+........ ............+.. .+..
T Consensus 72 ~~~~ilv~~~~~~--~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (174)
T cd04135 72 TDVFLICFSVVNP--ASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH 149 (174)
T ss_pred CCEEEEEEECCCH--HHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 4899999999844 4455543 4677776655689999999999986543111000 000000111222222 2224
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++++||++|.|++++++.+.+.+
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHHh
Confidence 799999999999999999998754
No 150
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.73 E-value=8.5e-17 Score=144.08 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=103.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||+.++....+.. .++. +.+.....+.+++ ..+.+|||+|.... .++ ..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~-~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~-------------~~~-~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQ-LESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA-------------QFA-SW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCC-CCCC-CccceEEEEEECCEEEEEEEEECCCCCch-------------hHH-hc
Confidence 68999999999999999988765532 2222 2333334556666 45889999999531 112 33
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCcE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDGA 393 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (435)
++++++|+|.+++ .+++....|+..+.... .+.|+++|+||+|+....... ... ....++... ...++
T Consensus 66 ~~~~ilv~d~~~~--~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~--v~~-----~~~~~~~~~~~~~~~ 136 (158)
T cd04103 66 VDAVIFVFSLENE--ASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRV--IDD-----ARARQLCADMKRCSY 136 (158)
T ss_pred CCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcc--cCH-----HHHHHHHHHhCCCcE
Confidence 5899999999954 67777777888887653 457999999999985322111 000 111222222 23689
Q ss_pred EEcccCCCCCHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~ 414 (435)
+++||++|.||+++|+.+.+.
T Consensus 137 ~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 137 YETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999999998754
No 151
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=4.1e-17 Score=148.11 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=122.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++++++|.++||||-|+.++++..+.....+..-.++....+..++ ...+||||+|+.+.. ....++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr---------AitSaY 83 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR---------AITSAY 83 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhc---------cccchh
Confidence 468899999999999999999999888665555444555555556665 456999999996532 123455
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.+.+.++++|+|++ ...+++....|+.+++... ++.++++|+||+||.....+.. +....+++..+..
T Consensus 84 YrgAvGAllVYDIT--r~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~t---------e~~k~~Ae~~~l~ 152 (222)
T KOG0087|consen 84 YRGAVGALLVYDIT--RRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPT---------EDGKAFAEKEGLF 152 (222)
T ss_pred hcccceeEEEEech--hHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccch---------hhhHhHHHhcCce
Confidence 56668899999999 4578889999999999987 6789999999999987443221 2333455555568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++++||+.+.|+++.|+.+...+
T Consensus 153 f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EEEecccccccHHHHHHHHHHHH
Confidence 99999999999999998877654
No 152
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.73 E-value=1.1e-16 Score=152.42 Aligned_cols=160 Identities=26% Similarity=0.353 Sum_probs=110.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+++++|.+|+|||||++++++....+++++++|.+...+.+.+++..+++|||||+.+...... .+.......+.+ +|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~l~~~~~-ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK-GRGRQVIAVART-AD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch-hHHHHHHHhhcc-CC
Confidence 5899999999999999999998878889999999999998889999999999999876442221 122223334444 48
Q ss_pred EEEEEEeCCCCCC-------------------------------------------CCHHHHHHHHHHH-----------
Q 037423 319 AILFVHDLSGECG-------------------------------------------TSPSDQFTIYKEI----------- 344 (435)
Q Consensus 319 ~il~ViD~s~~~g-------------------------------------------~s~~~~~~l~~~l----------- 344 (435)
++++|+|++.... .+.++...++++.
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 9999999874311 0011111111111
Q ss_pred -----------HHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHH
Q 037423 345 -----------KERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 345 -----------~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
.......|+++|+||+|+..... .. .+... .+++++||++|.|++++++.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~-----------~~---~~~~~--~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE-----------LD---LLARQ--PNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH-----------HH---HHhcC--CCEEEEcCCCCCCHHHHHHHHHH
Confidence 10001258999999999865321 11 12221 35899999999999999999998
Q ss_pred HHh
Q 037423 414 MLV 416 (435)
Q Consensus 414 ~l~ 416 (435)
.+.
T Consensus 224 ~L~ 226 (233)
T cd01896 224 KLG 226 (233)
T ss_pred HhC
Confidence 763
No 153
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.73 E-value=1.1e-16 Score=142.58 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=113.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|.+|||||||++++.+..+.....+....+.....+..++ ..+.+|||+|.... ..+....+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~~~~~~- 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF--------DSLRDIFYRN- 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG--------HHHHHHHHTT-
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc--------cccccccccc-
Confidence 689999999999999999997765432222222455555566655 45899999997432 1222233333
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.+++++|+|+++ ..+++....|+..+....+ +.|+++|+||.|+....... ......+....+.++++
T Consensus 72 ~~~~ii~fd~~~--~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~---------~~~~~~~~~~~~~~~~e 140 (162)
T PF00071_consen 72 SDAIIIVFDVTD--EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS---------VEEAQEFAKELGVPYFE 140 (162)
T ss_dssp ESEEEEEEETTB--HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC---------HHHHHHHHHHTTSEEEE
T ss_pred cccccccccccc--cccccccccccccccccccccccceeeeccccccccccch---------hhHHHHHHHHhCCEEEE
Confidence 489999999984 4677788889999998876 58999999999988633221 11233334444478999
Q ss_pred cccCCCCCHHHHHHHHHHHHh
Q 037423 396 VSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+||+++.||.++|..+.+.+.
T Consensus 141 ~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 141 VSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EBTTTTTTHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 154
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.72 E-value=1.2e-16 Score=144.35 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=104.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|+|||||++++.+..+.. .+..|..+.....+.+++ ..+.+|||||..+... .....+ .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~-~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------LRPLSY-P 71 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh--------cccccc-C
Confidence 579999999999999999999876532 233344333344555554 4578999999853211 111122 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhh-cCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRK-MGP 390 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~ 390 (435)
.+|++++|+|+++. .++++.. .|...+.....+.|+++|+||+|+............ ..........+.. ...
T Consensus 72 ~~d~~i~v~~~~~~--~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~ 149 (175)
T cd01870 72 DTDVILMCFSIDSP--DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGA 149 (175)
T ss_pred CCCEEEEEEECCCH--HHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCC
Confidence 35889999999854 3444443 366777665568999999999998754311100000 0000111112222 123
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.+++++||++|.|+++++++|.+..
T Consensus 150 ~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 150 FGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cEEEEeccccCcCHHHHHHHHHHHh
Confidence 4799999999999999999998654
No 155
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.72 E-value=1.6e-16 Score=147.29 Aligned_cols=164 Identities=15% Similarity=0.028 Sum_probs=103.3
Q ss_pred CEEEEecCCCCChhhHHH-HhhCCCCc----cccCCceee--eeeEEE--------EEeC--CceEEEEeCCCCCCCCch
Q 037423 238 PTLCLVGAPNVGKSSLVR-VISTGKPE----VCNYPFTTR--GILMGH--------INLG--YQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~-~l~~~~~~----v~~~~~tT~--~~~~~~--------~~~~--~~~~~liDTpG~~~~~~~ 300 (435)
.+|+++|.+|||||||+. .+.+..+. ...+..|.. +..... ..++ ...+.+|||+|.....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~-- 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKD-- 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhh--
Confidence 589999999999999996 55443221 223333331 211111 1223 3578999999985311
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccc---------
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAY--------- 370 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~--------- 370 (435)
...++ ..++++++|+|+++ ..++++.. .|+..+....++.|+++|+||+||........
T Consensus 81 --------~~~~~-~~ad~iilv~d~t~--~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~ 149 (195)
T cd01873 81 --------RRFAY-GRSDVVLLCFSIAS--PNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLAR 149 (195)
T ss_pred --------hcccC-CCCCEEEEEEECCC--hhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccc
Confidence 11122 34599999999984 45677765 48888877656789999999999964210000
Q ss_pred cc-hhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 371 VT-EDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 371 ~~-~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.. ............++...+.+++++||++|+||+++|+.+.++
T Consensus 150 ~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 150 PIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 00 000011123334444445689999999999999999998764
No 156
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=2e-16 Score=145.10 Aligned_cols=160 Identities=15% Similarity=0.173 Sum_probs=103.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+|+++|.+|+|||||++++.+..+.. + .+|.+.....+..++.++.++||||.... ......++..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~--~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~~--------~~~~~~~~~~ 84 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ--H-QPTQHPTSEELAIGNIKFTTFDLGGHQQA--------RRLWKDYFPE 84 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc--c-CCccccceEEEEECCEEEEEEECCCCHHH--------HHHHHHHhCC
Confidence 46889999999999999999999765421 1 23444555666677889999999998432 1222334444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh------h
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR------K 387 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~ 387 (435)
++++++|+|+++. .+......++..+... ..+.|+++|+||+|+...... ++.... ..+.... .
T Consensus 85 -ad~ii~vvD~~~~--~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~----~~i~~~-l~l~~~~~~~~~~~ 156 (184)
T smart00178 85 -VNGIVYLVDAYDK--ERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE----DELRYA-LGLTNTTGSKGKVG 156 (184)
T ss_pred -CCEEEEEEECCcH--HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH----HHHHHH-cCCCcccccccccC
Confidence 5899999999853 2233333344444321 247899999999998643211 111110 0010100 1
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.....++++||++|.|+++++++|.+.
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhh
Confidence 123468999999999999999999764
No 157
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=4.7e-17 Score=149.79 Aligned_cols=161 Identities=19% Similarity=0.220 Sum_probs=108.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC------------------ccccCCceeeeeeEEEEE--eCCceEEEEeCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP------------------EVCNYPFTTRGILMGHIN--LGYQNFQITDTPGLLQ 296 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~------------------~v~~~~~tT~~~~~~~~~--~~~~~~~liDTpG~~~ 296 (435)
...|+++|+.++|||||+.+|+.... ......+.|.+.....+. ..+..+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 35799999999999999999984221 011223566777777777 7889999999999843
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhh
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDED 376 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~ 376 (435)
. .......+ ..+|++++|+|+. .|...+... .+..+... +.|+++|+||+|+.... ..+..
T Consensus 83 f--------~~~~~~~~-~~~D~ailvVda~--~g~~~~~~~-~l~~~~~~--~~p~ivvlNK~D~~~~~-----~~~~~ 143 (188)
T PF00009_consen 83 F--------IKEMIRGL-RQADIAILVVDAN--DGIQPQTEE-HLKILREL--GIPIIVVLNKMDLIEKE-----LEEII 143 (188)
T ss_dssp H--------HHHHHHHH-TTSSEEEEEEETT--TBSTHHHHH-HHHHHHHT--T-SEEEEEETCTSSHHH-----HHHHH
T ss_pred e--------eeccccee-cccccceeeeecc--ccccccccc-cccccccc--ccceEEeeeeccchhhh-----HHHHH
Confidence 1 12233333 3459999999998 567766665 55566665 78999999999998221 11111
Q ss_pred HHHH-HHH-hhhhc--CCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 377 SEHL-EMA-SYRKM--GPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 377 ~~~~-~~~-~~~~~--~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.... .+. .+... ...|++++||++|.|+++|++.+.+.++
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 144 EEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 1111 121 11111 1358999999999999999999998875
No 158
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.72 E-value=1.9e-16 Score=142.88 Aligned_cols=156 Identities=19% Similarity=0.113 Sum_probs=102.9
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|.+|+|||||++++.+. +. ..+ ..|.+.....+..++..+++|||||.... ......++.. ++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~-~~~-~~t~g~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~-a~ 68 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IP-KKV-APTVGFTPTKLRLDKYEVCIFDLGGGANF--------RGIWVNYYAE-AH 68 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CC-ccc-cCcccceEEEEEECCEEEEEEECCCcHHH--------HHHHHHHHcC-CC
Confidence 4899999999999999999865 21 122 22333444566677889999999997431 2223344444 58
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh--cCCCcEE
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--MGPDGAI 394 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 394 (435)
+++||+|+++. .+.++...++..+... ..+.|+++|+||+|+........ ... ...+..+.. ....+++
T Consensus 69 ~ii~V~D~s~~--~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~----i~~-~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 69 GLVFVVDSSDD--DRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGAD----VIE-YLSLEKLVNENKSLCHIE 141 (167)
T ss_pred EEEEEEECCch--hHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHH----HHH-hcCcccccCCCCceEEEE
Confidence 99999999854 3566656666666543 24789999999999976542111 111 111112221 1224678
Q ss_pred EcccCCC------CCHHHHHHHHHH
Q 037423 395 RVSVMNE------EGLNELKDRVYQ 413 (435)
Q Consensus 395 ~vSA~~g------~GI~eL~~~i~~ 413 (435)
++||++| .|+++.++||.+
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 8999998 899999999975
No 159
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.72 E-value=9.9e-17 Score=152.91 Aligned_cols=188 Identities=22% Similarity=0.260 Sum_probs=128.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH----HH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL----TL 310 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~----~~ 310 (435)
+...|+++|.||+|||||.|.+.+.++ .++..+.||+....+.+..+...++|+||||+......-+..+... ..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 345799999999999999999999875 7888899999999999999999999999999987654333322222 12
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc-----hhhhH--HHHHHH
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT-----EDEDS--EHLEMA 383 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~-----~~~~~--~~~~~~ 383 (435)
.++.+ +|+|++|+|+++.. ..-.. .++..+..+ ...|-|+|+||+|........-.. +.... ......
T Consensus 151 ~a~q~-AD~vvVv~Das~tr--~~l~p-~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 151 DAAQN-ADCVVVVVDASATR--TPLHP-RVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHhh-CCEEEEEEeccCCc--CccCh-HHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 34444 48999999998521 11122 134445544 478999999999988654221100 00000 111111
Q ss_pred hhhhc-------------CCCcEEEcccCCCCCHHHHHHHHHHHHhcccccccCCCCC
Q 037423 384 SYRKM-------------GPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSRSNE 428 (435)
Q Consensus 384 ~~~~~-------------~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~~~ 428 (435)
.+... +...+|.+||++|+||+++.+++........-+.+.....
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence 12111 1235899999999999999999999988776666655443
No 160
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=5e-16 Score=135.55 Aligned_cols=155 Identities=22% Similarity=0.179 Sum_probs=103.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|+|||||++.+.+........+++|.+.....+..++ ..+.+|||||..+... ........
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 73 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA--------IRRLYYRA 73 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH--------HHHHHHhh
Confidence 5799999999999999999998877677778888888877777777 6789999999654321 11111222
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+.+++++|.... -.+..+.. .+...+..... +.|+++|+||+|+.... . ... ....+......++
T Consensus 74 -~~~~i~~~d~~~~-v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~-------~~~--~~~~~~~~~~~~~ 141 (161)
T TIGR00231 74 -VESSLRVFDIVIL-VLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-L-------KTH--VAFLFAKLNGEPI 141 (161)
T ss_pred -hhEEEEEEEEeee-ehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-h-------hHH--HHHHHhhccCCce
Confidence 2556667776532 02222222 34444444333 78999999999997643 0 001 1111222233579
Q ss_pred EEcccCCCCCHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVY 412 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~ 412 (435)
+++||++|.|+++++++|.
T Consensus 142 ~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 142 IPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred EEeecCCCCCHHHHHHHhh
Confidence 9999999999999998864
No 161
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=3.8e-16 Score=136.38 Aligned_cols=160 Identities=27% Similarity=0.291 Sum_probs=108.7
Q ss_pred EecCCCCChhhHHHHhhCCCCc-cccCCceeeeeeEEEEEeC-CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 242 LVGAPNVGKSSLVRVISTGKPE-VCNYPFTTRGILMGHINLG-YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 242 ~~G~~~~GKssl~~~l~~~~~~-v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
++|++|+|||||++++.+.... ....+++|........... +..+.+|||||+.+....... ........+ ..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~-~~~~~~~~~-~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRE-REELARRVL-ERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhh-HHHHHHHHH-HhCCE
Confidence 5899999999999999987654 6677788888777776665 678999999999876533211 111222233 34589
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccC
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVM 399 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~ 399 (435)
+++|+|++.. ....... +...... .+.|+++|+||+|+........ ... ............+++++||+
T Consensus 79 il~v~~~~~~--~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~sa~ 147 (163)
T cd00880 79 ILFVVDADLR--ADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEE----LLE--LRLLILLLLLGLPVIAVSAL 147 (163)
T ss_pred EEEEEeCCCC--CCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHH----HHH--HHHhhcccccCCceEEEeee
Confidence 9999999843 4444433 3334433 3799999999999986542110 000 01112223345689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 037423 400 NEEGLNELKDRVYQM 414 (435)
Q Consensus 400 ~g~GI~eL~~~i~~~ 414 (435)
++.|++++++++.+.
T Consensus 148 ~~~~v~~l~~~l~~~ 162 (163)
T cd00880 148 TGEGIDELREALIEA 162 (163)
T ss_pred ccCCHHHHHHHHHhh
Confidence 999999999999875
No 162
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.71 E-value=4.8e-16 Score=136.60 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=97.9
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
|+++|++|+|||||++++.+..+.....|. .......+..++..+.+|||||.... ......++. ..++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~-~~d~ 70 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPT--VGFNMRKVTKGNVTLKVWDLGGQPRF--------RSMWERYCR-GVNA 70 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCC--CCcceEEEEECCEEEEEEECCCCHhH--------HHHHHHHHh-cCCE
Confidence 789999999999999999987664443332 23333345566788999999997432 122223333 3589
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHH-hhhhcCCCcEEEc
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMA-SYRKMGPDGAIRV 396 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v 396 (435)
+++|+|++.. .+......++..+... ..+.|+++|+||+|+....... +. ..... ........+++++
T Consensus 71 ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04159 71 IVYVVDAADR--TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD----EL---IEQMNLKSITDREVSCYSI 141 (159)
T ss_pred EEEEEECCCH--HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH----HH---HHHhCcccccCCceEEEEE
Confidence 9999998843 2233222333333321 1468999999999987543110 00 00110 0111123578999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~ 413 (435)
||++|.|++++++++.+
T Consensus 142 Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 142 SCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EeccCCChHHHHHHHhh
Confidence 99999999999999865
No 163
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.70 E-value=2e-16 Score=169.27 Aligned_cols=153 Identities=20% Similarity=0.249 Sum_probs=111.4
Q ss_pred cCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-cCCcEEEE
Q 037423 244 GAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-HLPTAILF 322 (435)
Q Consensus 244 G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~~~d~il~ 322 (435)
|.||||||||+|++++....++++|++|.+...+.+.+++.++.+|||||+.+..... .-|.....++. ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s--~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFS--LEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccc--hHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999999888899999999999988888888899999999987643221 11222332322 34699999
Q ss_pred EEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCC
Q 037423 323 VHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEE 402 (435)
Q Consensus 323 ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~ 402 (435)
|+|+++. +....+..++.+. +.|+++|+||+|+.+..... .+ ...+.+..+.+++++||++|+
T Consensus 79 VvDat~l-----er~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~-------~d---~~~L~~~lg~pvv~tSA~tg~ 141 (591)
T TIGR00437 79 VVDASNL-----ERNLYLTLQLLEL--GIPMILALNLVDEAEKKGIR-------ID---EEKLEERLGVPVVPTSATEGR 141 (591)
T ss_pred EecCCcc-----hhhHHHHHHHHhc--CCCEEEEEehhHHHHhCCCh-------hh---HHHHHHHcCCCEEEEECCCCC
Confidence 9998842 2222344455554 79999999999986543211 11 112222234689999999999
Q ss_pred CHHHHHHHHHHHH
Q 037423 403 GLNELKDRVYQML 415 (435)
Q Consensus 403 GI~eL~~~i~~~l 415 (435)
|++++++++.+..
T Consensus 142 Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 142 GIERLKDAIRKAI 154 (591)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 164
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.70 E-value=6.3e-16 Score=142.04 Aligned_cols=171 Identities=16% Similarity=0.088 Sum_probs=107.6
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|++|+|||||++++....+.. .+..|..+.....+..++ ..+.+|||||....... ....+.+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~~~~~~~ 72 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL--------RPLSYSK 72 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc--------chhhcCC
Confidence 379999999999999999998655432 222333333344444444 44789999997543211 1112233
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCcccc-chhhhHHHHHHHhhhhcCC-Cc
Q 037423 316 LPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYV-TEDEDSEHLEMASYRKMGP-DG 392 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~ 392 (435)
.+++++++|++.. .++++.. .|+..+....++.|+++|+||+|+......... .............+....+ .+
T Consensus 73 -a~~~llv~~i~~~--~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (187)
T cd04129 73 -AHVILIGFAVDTP--DSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKK 149 (187)
T ss_pred -CCEEEEEEECCCH--HHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcE
Confidence 4889999999843 4566554 488888776678999999999998643211000 0000000111222222222 47
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++++||++|.||+++++++.+.+.....
T Consensus 150 ~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 150 YMECSALTGEGVDDVFEAATRAALLVRK 177 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHhcccC
Confidence 9999999999999999999987654433
No 165
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.2e-16 Score=134.43 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=117.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.++|+++|..|||||.|+++++..-+..+.-...-.++....++.++ .++++|||+|..+. ...+..+++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerf--------rsitqsyyr 78 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF--------RSITQSYYR 78 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHH--------HHHHHHHhh
Confidence 47899999999999999999998766544443344566666677765 56799999998542 334444554
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCC-cEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDH-IWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~-piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. ++++++|+|++ |..++..+..|+.+|.++..++ --|+|+||+|+.+..++.. ....+|.+....-+
T Consensus 79 s-ahalilvydis--cqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~---------qigeefs~~qdmyf 146 (213)
T KOG0095|consen 79 S-AHALILVYDIS--CQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQ---------QIGEEFSEAQDMYF 146 (213)
T ss_pred h-cceEEEEEecc--cCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhH---------HHHHHHHHhhhhhh
Confidence 4 58999999999 8899999999999999986443 3489999999987653322 11122222223347
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||+...|++.||..+.-.+.
T Consensus 147 letsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 147 LETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred hhhcccchhhHHHHHHHHHHHHH
Confidence 89999999999999988765543
No 166
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=141.11 Aligned_cols=166 Identities=17% Similarity=0.132 Sum_probs=116.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|.+.|.+|||||||+|.+...++..........++....+.+++ ..+++|||+|..+.. .+...+++
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFq--------sLg~aFYR 80 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQ--------SLGVAFYR 80 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhh--------hcccceec
Confidence 46899999999999999999987765333222222233333333444 457999999996543 23344444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-----CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-c
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-----DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK-M 388 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-----~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~ 388 (435)
. +|++++|+|++. .-+++.+..|.+++..... .-|+|+++||+|+....... ........|+. .
T Consensus 81 g-aDcCvlvydv~~--~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~-------VS~~~Aq~WC~s~ 150 (210)
T KOG0394|consen 81 G-ADCCVLVYDVNN--PKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQ-------VSEKKAQTWCKSK 150 (210)
T ss_pred C-CceEEEEeecCC--hhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccce-------eeHHHHHHHHHhc
Confidence 4 599999999984 4678888889998876541 35899999999997643111 11233445554 4
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+..|+|++|||...||++.|+.+.........
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHHHHhccc
Confidence 66899999999999999999999987765543
No 167
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=1.1e-15 Score=137.81 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=99.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+++++|++|+|||||++.+.+..... ...|.+.....+..++..+.+|||||.... .......+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~--------~~~~~~~~~- 80 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRAI--------RPYWRNYFE- 80 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHHH--------HHHHHHHhc-
Confidence 46889999999999999999999865421 122333344456667888999999997432 112222333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.++++++|+|+++. .+..+...++..+... ..+.|+++|+||+|+...... .+... ...+..+. ....++
T Consensus 81 ~~~~ii~v~D~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~i~~-~l~~~~~~-~~~~~~ 152 (173)
T cd04155 81 NTDCLIYVIDSADK--KRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPA----EEIAE-ALNLHDLR-DRTWHI 152 (173)
T ss_pred CCCEEEEEEeCCCH--HHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCH----HHHHH-HcCCcccC-CCeEEE
Confidence 35889999999843 2333333333333321 136899999999998754311 01110 00011111 111257
Q ss_pred EEcccCCCCCHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~ 413 (435)
+++||++|+|+++++++|++
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 168
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=4.8e-16 Score=139.27 Aligned_cols=148 Identities=16% Similarity=0.191 Sum_probs=92.9
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|++|+|||||+|++.+.... ..+|.. +.+.+. .+|||||....... +.......+. .+|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~----~~~~~~-----v~~~~~--~~iDtpG~~~~~~~----~~~~~~~~~~-~ad 66 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL----ARKTQA-----VEFNDK--GDIDTPGEYFSHPR----WYHALITTLQ-DVD 66 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc----CccceE-----EEECCC--CcccCCccccCCHH----HHHHHHHHHh-cCC
Confidence 6999999999999999998865421 112222 222222 27999998543221 1222223333 359
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-cC-CCcEEEc
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK-MG-PDGAIRV 396 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~v 396 (435)
++++|+|++.. .+.... ++..+ ..++|+++|+||+|+.+.+ . ....++.. .. ..|++++
T Consensus 67 ~il~v~d~~~~--~s~~~~--~~~~~---~~~~~ii~v~nK~Dl~~~~-----~-------~~~~~~~~~~~~~~p~~~~ 127 (158)
T PRK15467 67 MLIYVHGANDP--ESRLPA--GLLDI---GVSKRQIAVISKTDMPDAD-----V-------AATRKLLLETGFEEPIFEL 127 (158)
T ss_pred EEEEEEeCCCc--ccccCH--HHHhc---cCCCCeEEEEEccccCccc-----H-------HHHHHHHHHcCCCCCEEEE
Confidence 99999999844 333222 22222 2368999999999986432 0 11111111 11 2489999
Q ss_pred ccCCCCCHHHHHHHHHHHHhccccc
Q 037423 397 SVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
||++|+|++++++.+.+.+.+...-
T Consensus 128 Sa~~g~gi~~l~~~l~~~~~~~~~~ 152 (158)
T PRK15467 128 NSHDPQSVQQLVDYLASLTKQEEAG 152 (158)
T ss_pred ECCCccCHHHHHHHHHHhchhhhcc
Confidence 9999999999999999988665443
No 169
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.3e-16 Score=158.98 Aligned_cols=173 Identities=22% Similarity=0.280 Sum_probs=119.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHH---
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTL--- 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~--- 310 (435)
..+..|+++|+||||||||+|+|++.+ ..|++.||||+|.....++.+|.++.++||+|+++.. ...+|++.+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~---~~~iE~~gI~rA 342 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES---NDGIEALGIERA 342 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc---CChhHHHhHHHH
Confidence 467899999999999999999999765 5899999999999999999999999999999998822 233455443
Q ss_pred -HHHhcCCcEEEEEEeCCCCCCCCHHHHH--HHHHHHHHh-c------CCCcEEEEEeccCCCCCCCccccchhhhHHHH
Q 037423 311 -AVLTHLPTAILFVHDLSGECGTSPSDQF--TIYKEIKER-F------SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHL 380 (435)
Q Consensus 311 -~~l~~~~d~il~ViD~s~~~g~s~~~~~--~l~~~l~~~-~------~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~ 380 (435)
+.+.. +|++++|+|+.+ +.+.++.. ..+...... + ...|+++|.||+|+...-........ .
T Consensus 343 ~k~~~~-advi~~vvda~~--~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~-----~ 414 (531)
T KOG1191|consen 343 RKRIER-ADVILLVVDAEE--SDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPV-----V 414 (531)
T ss_pred HHHHhh-cCEEEEEecccc--cccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCce-----e
Confidence 33333 499999999953 23333332 233332221 1 23789999999999876311110000 0
Q ss_pred HHHhhhhcCCCc-EEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 381 EMASYRKMGPDG-AIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 381 ~~~~~~~~~~~~-~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.... ......+ ..++|+++++|++.|.+++.+.+....
T Consensus 415 ~~~~-~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~ 453 (531)
T KOG1191|consen 415 YPSA-EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLV 453 (531)
T ss_pred cccc-ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence 0000 1111223 455999999999999999999876543
No 170
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.69 E-value=1.7e-15 Score=140.00 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=95.1
Q ss_pred CEEEEecCCCCChhhHHHHhhC--CCCcc--------------ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST--GKPEV--------------CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED 301 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~--~~~~v--------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 301 (435)
+.|+++|++|+|||||+++++. ..+.. ....++|.......+.+++..+.+|||||+.+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 4799999999999999999985 22211 112455555556667777889999999998542
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHH
Q 037423 302 RNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLE 381 (435)
Q Consensus 302 ~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~ 381 (435)
......++.. .|++++|+|+++ +...+. ..++..+... +.|+++|+||+|+..... .........
T Consensus 79 ----~~~~~~~~~~-~d~~ilV~d~~~--~~~~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~-----~~~~~~~~~ 143 (194)
T cd01891 79 ----GGEVERVLSM-VDGVLLLVDASE--GPMPQT-RFVLKKALEL--GLKPIVVINKIDRPDARP-----EEVVDEVFD 143 (194)
T ss_pred ----HHHHHHHHHh-cCEEEEEEECCC--CccHHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH-----HHHHHHHHH
Confidence 2223334444 489999999984 332333 2244544443 789999999999975321 111111111
Q ss_pred H-Hhhh---hcCCCcEEEcccCCCCCHHHH
Q 037423 382 M-ASYR---KMGPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 382 ~-~~~~---~~~~~~~i~vSA~~g~GI~eL 407 (435)
. ..+. ...+.+++++||++|.|+.++
T Consensus 144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 144 LFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHhCCccccCccCEEEeehhcccccccc
Confidence 1 1110 122458999999999877444
No 171
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=152.41 Aligned_cols=164 Identities=27% Similarity=0.367 Sum_probs=117.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+++++|.|++|||||++.|++.+..+++|+|||..+..+.+.|+|..+|++|+||+.......++.- ...+. ...
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG-~~vls-v~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG-RQVLS-VAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCc-ceeee-eec
Confidence 4468999999999999999999999999999999999999999999999999999999988765543210 11122 233
Q ss_pred CCcEEEEEEeCCCCC-------------------------------------------CCCHHHHHHHHHHH--------
Q 037423 316 LPTAILFVHDLSGEC-------------------------------------------GTSPSDQFTIYKEI-------- 344 (435)
Q Consensus 316 ~~d~il~ViD~s~~~-------------------------------------------g~s~~~~~~l~~~l-------- 344 (435)
.+|+|++|+|+.... +.+.++...++.+.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 458899999988421 01111222122111
Q ss_pred --------------HHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHH
Q 037423 345 --------------KERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDR 410 (435)
Q Consensus 345 --------------~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~ 410 (435)
.....-+|.++|+||+|+...+ ....+.+. ..++++||+++.|+++|.+.
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e-----------~~~~l~~~-----~~~v~isa~~~~nld~L~e~ 283 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE-----------ELERLARK-----PNSVPISAKKGINLDELKER 283 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH-----------HHHHHHhc-----cceEEEecccCCCHHHHHHH
Confidence 1001236889999999998743 11122221 26899999999999999999
Q ss_pred HHHHHhc
Q 037423 411 VYQMLVG 417 (435)
Q Consensus 411 i~~~l~~ 417 (435)
|.+.+.-
T Consensus 284 i~~~L~l 290 (365)
T COG1163 284 IWDVLGL 290 (365)
T ss_pred HHHhhCe
Confidence 9998743
No 172
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.68 E-value=7.4e-16 Score=168.07 Aligned_cols=161 Identities=18% Similarity=0.185 Sum_probs=113.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+.+.|+++|+.++|||||+++|.+..+.....++.|.+.....+.+++..+.||||||+..... ..... .
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~--------m~~rg-a 358 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA--------MRARG-A 358 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchh--------HHHhh-h
Confidence 57899999999999999999999887776666777888887777888888999999999865421 11222 2
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh--cCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--MGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 392 (435)
...|++++|+|++ .|...+.... +..+.. .+.|+|+|+||+|+...+. ............+.. ....+
T Consensus 359 ~~aDiaILVVdAd--dGv~~qT~e~-i~~a~~--~~vPiIVviNKiDl~~a~~-----e~V~~eL~~~~~~~e~~g~~vp 428 (787)
T PRK05306 359 QVTDIVVLVVAAD--DGVMPQTIEA-INHAKA--AGVPIIVAINKIDKPGANP-----DRVKQELSEYGLVPEEWGGDTI 428 (787)
T ss_pred hhCCEEEEEEECC--CCCCHhHHHH-HHHHHh--cCCcEEEEEECccccccCH-----HHHHHHHHHhcccHHHhCCCce
Confidence 3358999999998 4555555543 333443 3789999999999965321 111111111100111 12358
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
++++||++|.||++|+++|...
T Consensus 429 ~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 429 FVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEEEeCCCCCCchHHHHhhhhh
Confidence 9999999999999999999754
No 173
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=5.3e-16 Score=135.48 Aligned_cols=139 Identities=19% Similarity=0.246 Sum_probs=86.4
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+|+++|++|+|||||+|++.+.... +.. |. ...+.. .+|||||.... ....+.. ....+ ..+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t~-----~~~~~~---~~iDt~G~~~~---~~~~~~~-~~~~~-~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-TQ-----AVEYND---GAIDTPGEYVE---NRRLYSA-LIVTA-ADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-ce-----eEEEcC---eeecCchhhhh---hHHHHHH-HHHHh-hcCC
Confidence 6999999999999999999877542 221 21 122322 58999997321 1111111 12233 3458
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCcEEEcc
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDGAIRVS 397 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~vS 397 (435)
++++|+|+++. .+..+. .|... . ..|+++|+||+|+.+.... . .....+... ...+++++|
T Consensus 65 ~vilv~d~~~~--~s~~~~-~~~~~----~-~~p~ilv~NK~Dl~~~~~~-------~---~~~~~~~~~~~~~~~~~~S 126 (142)
T TIGR02528 65 VIALVQSATDP--ESRFPP-GFASI----F-VKPVIGLVTKIDLAEADVD-------I---ERAKELLETAGAEPIFEIS 126 (142)
T ss_pred EEEEEecCCCC--CcCCCh-hHHHh----c-cCCeEEEEEeeccCCcccC-------H---HHHHHHHHHcCCCcEEEEe
Confidence 99999999854 333332 23322 1 3599999999998653210 0 111122211 223799999
Q ss_pred cCCCCCHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVY 412 (435)
Q Consensus 398 A~~g~GI~eL~~~i~ 412 (435)
|++|.|++++++++.
T Consensus 127 a~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 127 SVDEQGLEALVDYLN 141 (142)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999999874
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=1.2e-15 Score=162.59 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=110.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-eEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
.+.++|+++|++|+|||||++++.+..+.....+++|.+.....+.+++. .+.+|||||+.+... +....
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~--------~r~rg- 155 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS--------MRARG- 155 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh--------HHHhh-
Confidence 46789999999999999999999987776666778888877777777554 899999999865321 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh--cCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--MGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 391 (435)
....|++++|+|++ .|...+... .+..+.. .+.|+++|+||+|+..... +.............. ....
T Consensus 156 a~~aDiaILVVda~--dgv~~qT~e-~i~~~~~--~~vPiIVviNKiDl~~~~~-----e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 156 AKVTDIVVLVVAAD--DGVMPQTIE-AISHAKA--ANVPIIVAINKIDKPEANP-----DRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred hccCCEEEEEEECC--CCCCHhHHH-HHHHHHH--cCCCEEEEEECcccccCCH-----HHHHHHHHHhhhhHHhcCCCc
Confidence 23458999999988 455555554 3333333 3789999999999865321 111111111000001 1124
Q ss_pred cEEEcccCCCCCHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
+++++||++|+|++++++++..
T Consensus 226 ~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 IFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred eEEEEECCCCCChHHHHHhhhh
Confidence 7999999999999999999874
No 175
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.67 E-value=2.3e-15 Score=139.49 Aligned_cols=176 Identities=18% Similarity=0.180 Sum_probs=117.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCcccc--CCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH---
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCN--YPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL--- 313 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~--~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l--- 313 (435)
+|+++|.+|+|||||+|++++....... .+++|.........+++.++.+|||||+.+..... +.+.......+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~-~~~~~~i~~~~~~~ 80 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP-EQLSKEIVRCLSLS 80 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh-HHHHHHHHHHHHhc
Confidence 6899999999999999999987653222 45788888888888889999999999998764321 22222222222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD---HIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~---~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
....++++||+|+.. ++..+.. .++.+.+.|.. .++++|+|++|................. +....+..+
T Consensus 81 ~~g~~~illVi~~~~---~t~~d~~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~---l~~l~~~c~ 153 (196)
T cd01852 81 APGPHAFLLVVPLGR---FTEEEEQ-AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEA---LKRLLEKCG 153 (196)
T ss_pred CCCCEEEEEEEECCC---cCHHHHH-HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHH---HHHHHHHhC
Confidence 234589999999873 5666654 67777776533 6889999999987654222211111122 222222222
Q ss_pred CcEEEcc-----cCCCCCHHHHHHHHHHHHhcccccc
Q 037423 391 DGAIRVS-----VMNEEGLNELKDRVYQMLVGQMDRI 422 (435)
Q Consensus 391 ~~~i~vS-----A~~g~GI~eL~~~i~~~l~~~~~~~ 422 (435)
..++.++ +..+.++++|++.|.+++.+.....
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~ 190 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGGKP 190 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344443 5668899999999999998754433
No 176
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=5.5e-15 Score=138.79 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=107.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEE--EE--eCCceEEEEeCCCCCCCCchhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGH--IN--LGYQNFQITDTPGLLQRRDEDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~--~~--~~~~~~~liDTpG~~~~~~~~~~~ie~~~~ 310 (435)
....+++++|++|+|||||+++++...+..... +|.+..... +. .+...+.+|||+|..... ....
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~--------~~~~ 76 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI--PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFG--------GLRD 76 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceEEEEEEEEECCeEEEEEEEECCCchhhh--------hhhH
Confidence 356789999999999999998776554322111 222222222 22 234678999999974321 1222
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.++. ..+++++|+|+++ ..++.+...|+..+.....+.|+++|+||+|+..... . . .. ..+....+
T Consensus 77 ~~~~-~~~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-~---~---~~----~~~~~~~~ 142 (215)
T PTZ00132 77 GYYI-KGQCAIIMFDVTS--RITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV-K---A---RQ----ITFHRKKN 142 (215)
T ss_pred HHhc-cCCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC-C---H---HH----HHHHHHcC
Confidence 2333 3488999999984 4567777778888876666789999999999864321 0 0 01 11222334
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
..++++||++|.|+++++.+|.+.+....
T Consensus 143 ~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 143 LQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 57999999999999999999998876543
No 177
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.66 E-value=1.8e-15 Score=140.35 Aligned_cols=150 Identities=14% Similarity=0.063 Sum_probs=97.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCC-------C---------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGK-------P---------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED 301 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~-------~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 301 (435)
..++++|+.++|||||+++|+... . ......++|.+.....+..++..+.++||||+.+.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 469999999999999999997420 0 11124677888777777778889999999998531
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHHHH
Q 037423 302 RNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEHL 380 (435)
Q Consensus 302 ~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~~ 380 (435)
-......+.. .|++++|+|++ .|...++.. ++..+... ++| +|+|+||+|+...... .+....+..
T Consensus 79 ----~~~~~~~~~~-~D~~ilVvda~--~g~~~~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~---~~~~~~~i~ 145 (195)
T cd01884 79 ----IKNMITGAAQ-MDGAILVVSAT--DGPMPQTRE-HLLLARQV--GVPYIVVFLNKADMVDDEEL---LELVEMEVR 145 (195)
T ss_pred ----HHHHHHHhhh-CCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCcEEEEEeCCCCCCcHHH---HHHHHHHHH
Confidence 1223334433 58999999988 456666554 45555554 666 7899999999743211 111111111
Q ss_pred HHHhhh--hcCCCcEEEcccCCCCCH
Q 037423 381 EMASYR--KMGPDGAIRVSVMNEEGL 404 (435)
Q Consensus 381 ~~~~~~--~~~~~~~i~vSA~~g~GI 404 (435)
...... .....+++++||++|.|+
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 111111 112468999999999985
No 178
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.66 E-value=4.9e-15 Score=131.44 Aligned_cols=161 Identities=22% Similarity=0.272 Sum_probs=100.7
Q ss_pred EEEecCCCCChhhHHHHhhCC--CCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch--hhhHHHHHHHHHHhc
Q 037423 240 LCLVGAPNVGKSSLVRVISTG--KPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE--DRNNLEKLTLAVLTH 315 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~--~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~ie~~~~~~l~~ 315 (435)
|+++|.+|+|||||++.+.+. ....+..+++|........ + ..++++||||+...... ....+......++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 789999999999999999943 3345566666665543322 2 38899999998654211 122222333333332
Q ss_pred C--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh--hcCCC
Q 037423 316 L--PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR--KMGPD 391 (435)
Q Consensus 316 ~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 391 (435)
. .+++++++|.+. ..+..+.. +...+... +.|+++|+||+|+....... .......... .....
T Consensus 79 ~~~~~~~~~v~d~~~--~~~~~~~~-~~~~l~~~--~~~vi~v~nK~D~~~~~~~~-------~~~~~~~~~l~~~~~~~ 146 (170)
T cd01876 79 RENLKGVVLLIDSRH--GPTEIDLE-MLDWLEEL--GIPFLVVLTKADKLKKSELA-------KALKEIKKELKLFEIDP 146 (170)
T ss_pred ChhhhEEEEEEEcCc--CCCHhHHH-HHHHHHHc--CCCEEEEEEchhcCChHHHH-------HHHHHHHHHHHhccCCC
Confidence 2 256888999873 33333322 34445443 68999999999997543111 1111111111 13345
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHH
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++++||+++.|++++++++.+.+
T Consensus 147 ~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 147 PIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred ceEEEecCCCCCHHHHHHHHHHhC
Confidence 789999999999999999998753
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.66 E-value=3.4e-15 Score=159.60 Aligned_cols=163 Identities=15% Similarity=0.099 Sum_probs=110.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCC---CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK---PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~---~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.|+++|++++|||||+++|++.. ......+++|.+.....+.+++..+.+|||||+.+ +...+...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~--------f~~~~~~g~~~ 73 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK--------FISNAIAGGGG 73 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH--------HHHHHHhhhcc
Confidence 58999999999999999998643 22334567888888777888888999999999732 11223333333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (435)
.|++++|+|++ .|...+... .+..+... +.| +++|+||+|+.+.... +........+...... ...++
T Consensus 74 -aD~aILVVDa~--~G~~~qT~e-hl~il~~l--gi~~iIVVlNK~Dlv~~~~~----~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 74 -IDAALLVVDAD--EGVMTQTGE-HLAVLDLL--GIPHTIVVITKADRVNEEEI----KRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred -CCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCeEEEEEECCCCCCHHHH----HHHHHHHHHHHHHhCCCCCCcE
Confidence 48999999998 455455444 23334333 677 9999999999764311 1111111111111111 14689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++||++|+|++++++.+.+.+....
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 99999999999999999988876543
No 180
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.65 E-value=1.5e-15 Score=142.16 Aligned_cols=154 Identities=17% Similarity=0.100 Sum_probs=95.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC-cc------------------------------ccCCceeeeeeEEEEEeCCceEE
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP-EV------------------------------CNYPFTTRGILMGHINLGYQNFQ 287 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~-~v------------------------------~~~~~tT~~~~~~~~~~~~~~~~ 287 (435)
+|+++|++|+|||||+++|+...- .. ....++|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999874321 11 11267888888888888999999
Q ss_pred EEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCC
Q 037423 288 ITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSP 367 (435)
Q Consensus 288 liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~ 367 (435)
+|||||+.+. .......+. .+|++++|+|++ .+...++.. ....+... ...++|+|+||+|+.....
T Consensus 81 liDTpG~~~~--------~~~~~~~~~-~ad~~llVvD~~--~~~~~~~~~-~~~~~~~~-~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 81 IADTPGHEQY--------TRNMVTGAS-TADLAILLVDAR--KGVLEQTRR-HSYILSLL-GIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEECCcHHHH--------HHHHHHhhh-hCCEEEEEEECC--CCccHhHHH-HHHHHHHc-CCCcEEEEEEchhcccCCH
Confidence 9999997431 111223333 358999999998 344444433 22333332 2245788999999875321
Q ss_pred ccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHH
Q 037423 368 VAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL 407 (435)
. ...........+.........+++++||++|.|+++.
T Consensus 148 ~--~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 148 E--VFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred H--HHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 0 0111111111111111222346999999999999854
No 181
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=4.8e-15 Score=138.23 Aligned_cols=160 Identities=14% Similarity=0.081 Sum_probs=93.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEEEEeC---------------------------C-----
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGHINLG---------------------------Y----- 283 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~~~~~---------------------------~----- 283 (435)
.|+++|+.|+|||||+.++.+... ......+.|.........+. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 589999999999999999975411 00001111211111111110 2
Q ss_pred -ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 284 -QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 284 -~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
..+.||||||..+ +.......+.. .|++++|+|++.. +...+... .+..+... ...|+++|+||+|+
T Consensus 82 ~~~i~~iDtPG~~~--------~~~~~~~~~~~-~D~~llVvd~~~~-~~~~~t~~-~l~~~~~~-~~~~iiivvNK~Dl 149 (203)
T cd01888 82 VRHVSFVDCPGHEI--------LMATMLSGAAV-MDGALLLIAANEP-CPQPQTSE-HLAALEIM-GLKHIIIVQNKIDL 149 (203)
T ss_pred ccEEEEEECCChHH--------HHHHHHHhhhc-CCEEEEEEECCCC-CCCcchHH-HHHHHHHc-CCCcEEEEEEchhc
Confidence 6789999999632 22223333433 4899999999842 22222222 23333332 23579999999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
..... .......+..+.. ....+++++||++|+|+++|++++.+.+..
T Consensus 150 ~~~~~-------~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 150 VKEEQ-------ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred cCHHH-------HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 75321 1111112222221 124579999999999999999999886644
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=3.6e-15 Score=161.38 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=108.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe----CCceEEEEeCCCCCCCCchhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL----GYQNFQITDTPGLLQRRDEDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~ie~~~~ 310 (435)
.+.+.|+++|++++|||||+++|....+.....++.|.+.....+.+ .+..+.||||||+... .....
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F--------~~mr~ 313 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF--------SSMRS 313 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHH--------HHHHH
Confidence 46789999999999999999999877665555566776554444433 2478999999998431 12222
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh--c
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--M 388 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 388 (435)
..+ ..+|++++|+|++ .|...+... .+..+... +.|+|+|+||+|+.... ................ .
T Consensus 314 rg~-~~aDiaILVVDA~--dGv~~QT~E-~I~~~k~~--~iPiIVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~g 382 (742)
T CHL00189 314 RGA-NVTDIAILIIAAD--DGVKPQTIE-AINYIQAA--NVPIIVAINKIDKANAN-----TERIKQQLAKYNLIPEKWG 382 (742)
T ss_pred HHH-HHCCEEEEEEECc--CCCChhhHH-HHHHHHhc--CceEEEEEECCCccccC-----HHHHHHHHHHhccchHhhC
Confidence 233 3458999999988 455555554 33444443 78999999999997532 1111111111000011 1
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
...+++++||++|.|+++|++++....
T Consensus 383 ~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 383 GDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 235899999999999999999998764
No 183
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.4e-15 Score=127.91 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=115.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
-.+++.++|...+|||||+.+.++..+...-+...-.++....+-.. ..++++|||+|+... ..++...+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEry--------rtiTTayy 91 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERY--------RTITTAYY 91 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhh--------hHHHHHHh
Confidence 34689999999999999999999887754333222233333333222 356899999998642 23444444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+ .++++++++|.++. .++.....|...|+... .+.|+|+|+||||+-++.... .+....+.+.-+..
T Consensus 92 R-gamgfiLmyDitNe--eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis---------~e~g~~l~~~LGfe 159 (193)
T KOG0093|consen 92 R-GAMGFILMYDITNE--ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVIS---------HERGRQLADQLGFE 159 (193)
T ss_pred h-ccceEEEEEecCCH--HHHHHHHHHHHHheeeeccCceEEEEecccCCccceeee---------HHHHHHHHHHhChH
Confidence 4 45899999999964 45666777888777654 478999999999997765322 12223333434568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+|+.||+.+.|++++|+.+...+.+.+
T Consensus 160 fFEtSaK~NinVk~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 160 FFETSAKENINVKQVFERLVDIICDKM 186 (193)
T ss_pred HhhhcccccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999998876654
No 184
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=3.9e-15 Score=129.32 Aligned_cols=162 Identities=18% Similarity=0.119 Sum_probs=116.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++|.++|.+|||||||+-++....+........-.|+....+.+++ .++-+|||+|+.+.. .++..++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR--------tLTpSyy 81 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR--------TLTPSYY 81 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh--------ccCHhHh
Confidence 357899999999999999999998776432222233456666666666 457899999996532 2344444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC--CcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD--HIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~--~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
+. +.++|+|+|++.+ .++..+..|++++..+..+ .-.++|+||+|...... ....+-..++.....
T Consensus 82 Rg-aqGiIlVYDVT~R--dtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~---------V~reEG~kfAr~h~~ 149 (209)
T KOG0080|consen 82 RG-AQGIILVYDVTSR--DTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV---------VDREEGLKFARKHRC 149 (209)
T ss_pred cc-CceeEEEEEccch--hhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc---------ccHHHHHHHHHhhCc
Confidence 44 4789999999955 5677777899999877533 33578999999653321 223445556666667
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
-++++||++.+|++..|+.+.+.+-+
T Consensus 150 LFiE~SAkt~~~V~~~FeelveKIi~ 175 (209)
T KOG0080|consen 150 LFIECSAKTRENVQCCFEELVEKIIE 175 (209)
T ss_pred EEEEcchhhhccHHHHHHHHHHHHhc
Confidence 79999999999999999999887644
No 185
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.6e-15 Score=126.48 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=118.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceee--eeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTR--GILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~--~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.++++++|+.|.|||.|+..+...++.-. ...|. ++....+.+++ .++++|||+|+.+ +...+..+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr--------FRSVtRsY 78 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER--------FRSVTRSY 78 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhccc--ccceeeeeecceeeeecCcEEEEEEeecccHHH--------HHHHHHHH
Confidence 46799999999999999999987665321 12332 33333444444 5789999999854 33445555
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
++.. ...++|+|++.+ .++..+..|+..++.+. +++-+|+++||.||....++. ..+...|++....
T Consensus 79 YRGA-AGAlLVYD~Tsr--dsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~Vt---------flEAs~FaqEnel 146 (214)
T KOG0086|consen 79 YRGA-AGALLVYDITSR--DSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVT---------FLEASRFAQENEL 146 (214)
T ss_pred hccc-cceEEEEeccch--hhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhh---------HHHHHhhhcccce
Confidence 5554 568899999954 67888888999888775 456788999999997665332 2334445555445
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccccccCCCCCccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSRSNEDNA 431 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~~~~e~ 431 (435)
-+.++||++|+|++|.|-...+.+. .++.+++.+++.
T Consensus 147 ~flETSa~TGeNVEEaFl~c~~tIl---~kIE~GElDPer 183 (214)
T KOG0086|consen 147 MFLETSALTGENVEEAFLKCARTIL---NKIESGELDPER 183 (214)
T ss_pred eeeeecccccccHHHHHHHHHHHHH---HHHhhcCCCHHH
Confidence 6889999999999998876666543 356666666553
No 186
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.63 E-value=1.1e-14 Score=155.09 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=102.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC------------------CceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG------------------YQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~~~ 297 (435)
+.|.|+++|++|+|||||+++|++..+......++|.+.....+..+ ...+.+|||||+...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 56889999999999999999999876543333335554332222221 123889999997532
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc---cccch-
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV---AYVTE- 373 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~---~~~~~- 373 (435)
. .+....+ ..+|++++|+|++ .|...++.. .+..+... +.|+++|+||+|+...... ....+
T Consensus 83 ~--------~l~~~~~-~~aD~~IlVvD~~--~g~~~qt~e-~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 83 T--------NLRKRGG-ALADLAILIVDIN--EGFKPQTQE-ALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred H--------HHHHHHH-hhCCEEEEEEECC--cCCCHhHHH-HHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHH
Confidence 1 2222233 3469999999998 455555554 33444443 7899999999999742110 00000
Q ss_pred ----------hhhHHH----HHHHh--hh---------hcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 374 ----------DEDSEH----LEMAS--YR---------KMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 374 ----------~~~~~~----~~~~~--~~---------~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+..... ..+.+ +. .....+++++||++|+|+++|++++.....
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 000000 00010 00 112368999999999999999999876544
No 187
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=8.7e-15 Score=123.85 Aligned_cols=114 Identities=29% Similarity=0.476 Sum_probs=85.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhh-HHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRN-NLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~-~ie~~~~~~l~~~ 316 (435)
+|+++|.+|+|||||+|+|++.+ ..++..+++|+......+.+++..+.++||||+.+....... .........+ ..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~-~~ 79 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI-SK 79 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH-CT
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH-HH
Confidence 48999999999999999999864 478899999999977788889999999999999876443221 1222234445 44
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
.|+++||+|++. .. .++...+++.+. .++|+++|+||
T Consensus 80 ~d~ii~vv~~~~--~~-~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 80 SDLIIYVVDASN--PI-TEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp ESEEEEEEETTS--HS-HHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CCEEEEEEECCC--CC-CHHHHHHHHHHh---cCCCEEEEEcC
Confidence 589999999763 22 233344667774 37999999998
No 188
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.62 E-value=5.8e-15 Score=134.46 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=109.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|..|+||||+++.+....... ...|.+.....+.+++..+.+||.+|....... ...++.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~---~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~--------w~~y~~ 80 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE---TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPL--------WKSYFQ 80 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE---EEEESSEEEEEEEETTEEEEEEEESSSGGGGGG--------GGGGHT
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc---cCcccccccceeeeCcEEEEEEecccccccccc--------ceeecc
Confidence 456789999999999999999998654321 334667777888889999999999998542221 112222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..++++||+|+++.. ........+..+... ..+.|+++++||+|+.+..... + ......+..+.......
T Consensus 81 -~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~----~-i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 81 -NADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEE----E-IKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp -TESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHH----H-HHHHTTGGGTTSSSCEE
T ss_pred -ccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcchhh----H-HHhhhhhhhcccCCceE
Confidence 348999999998542 233333344444432 2579999999999987643211 1 11111112222233457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++.+||.+|+|+.+.++||.+.+
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhcC
Confidence 89999999999999999998753
No 189
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.61 E-value=1.8e-14 Score=142.99 Aligned_cols=87 Identities=33% Similarity=0.497 Sum_probs=66.1
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe------------------------CCceEEEEeCCCCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL------------------------GYQNFQITDTPGLL 295 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTpG~~ 295 (435)
++++|.||+|||||+|++++..+.++++||||.++..+...+ .+..+++|||||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999999999999999999888765543 22568999999997
Q ss_pred CCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCC
Q 037423 296 QRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSG 328 (435)
Q Consensus 296 ~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~ 328 (435)
......+. +.......+++. |++++|+|+++
T Consensus 81 ~ga~~~~g-lg~~fL~~ir~a-D~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKG-LGNKFLDDLRDA-DALIHVVDASG 111 (318)
T ss_pred CCccchhh-HHHHHHHHHHHC-CEEEEEEeCCC
Confidence 65433221 222233345554 99999999984
No 190
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=2.8e-14 Score=153.19 Aligned_cols=158 Identities=12% Similarity=0.084 Sum_probs=105.7
Q ss_pred EEEEecCCCCChhhHHHHhhCCC---CccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK---PEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~---~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.|+++|++++|||||+++|++.. .......+.|.+.....+.. ++..+.+|||||+.+. -..+...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f--------i~~m~~g~~ 73 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF--------LSNMLAGVG 73 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH--------HHHHHHHhh
Confidence 58999999999999999998643 23334467888776666554 4567899999998421 122333333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh---cCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK---MGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 390 (435)
. .|++++|+|++ .|...++.. .+..+... +.| +|+|+||+|+.+... .... ...+..+.. ...
T Consensus 74 ~-~D~~lLVVda~--eg~~~qT~e-hl~il~~l--gi~~iIVVlNKiDlv~~~~----~~~v---~~ei~~~l~~~~~~~ 140 (614)
T PRK10512 74 G-IDHALLVVACD--DGVMAQTRE-HLAILQLT--GNPMLTVALTKADRVDEAR----IAEV---RRQVKAVLREYGFAE 140 (614)
T ss_pred c-CCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCeEEEEEECCccCCHHH----HHHH---HHHHHHHHHhcCCCC
Confidence 3 48999999988 566666655 33444433 455 689999999975321 1111 112222221 123
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|.|+++|++.|.+....
T Consensus 141 ~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 141 AKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999999887644
No 191
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.60 E-value=2.8e-14 Score=152.78 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=104.0
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCc---------cc------cCCceeeeeeEEEEEeC---C--ceEEEEeCCCCCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPE---------VC------NYPFTTRGILMGHINLG---Y--QNFQITDTPGLLQR 297 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~---------v~------~~~~tT~~~~~~~~~~~---~--~~~~liDTpG~~~~ 297 (435)
+.++++|++++|||||+++++..... +. ...+.|.......+.+. + ..+.+|||||+.+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 57999999999999999999753211 11 12245555444444442 2 57899999999753
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhH
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
. .....++.. +|++++|+|++ .+.+.++...|...+ . .+.|+++|+||+|+..... ..
T Consensus 84 ~--------~~v~~~l~~-aD~aILVvDat--~g~~~qt~~~~~~~~-~--~~ipiIiViNKiDl~~~~~-----~~--- 141 (595)
T TIGR01393 84 S--------YEVSRSLAA-CEGALLLVDAA--QGIEAQTLANVYLAL-E--NDLEIIPVINKIDLPSADP-----ER--- 141 (595)
T ss_pred H--------HHHHHHHHh-CCEEEEEecCC--CCCCHhHHHHHHHHH-H--cCCCEEEEEECcCCCccCH-----HH---
Confidence 2 122334444 48999999998 566677665554433 2 2689999999999864320 11
Q ss_pred HHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 378 EHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 378 ~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
....+.........+++++||++|.|+++|+++|.+.+...
T Consensus 142 ~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 142 VKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 11122222222223589999999999999999999887543
No 192
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.60 E-value=5.1e-14 Score=133.33 Aligned_cols=155 Identities=19% Similarity=0.132 Sum_probs=97.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCcccc--------------CCceeeee------------------------eEEEEE
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCN--------------YPFTTRGI------------------------LMGHIN 280 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~--------------~~~tT~~~------------------------~~~~~~ 280 (435)
+++++|+.++|||||++.+....+..+. ..|.|... ....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4789999999999999999853221000 01111100 012233
Q ss_pred eCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 281 LGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 281 ~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
..+..+.++||||+.+.. ..+...+. ..+|++++|+|++ .+...++.. ++..+... ++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~~~~--------~~~~~~~~~~~~D~~llVvda~--~g~~~~d~~-~l~~l~~~--~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL--------KTTLFGLTGYAPDYAMLVVAAN--AGIIGMTKE-HLGLALAL--NIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcHHHH--------HHHHHhhcccCCCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCEEEEEEC
Confidence 456789999999985321 12333333 3568999999988 456666655 56666665 7899999999
Q ss_pred cCCCCCCCccccchhhhHHHHHHHhhh--------------------------hcCCCcEEEcccCCCCCHHHHHHHHHH
Q 037423 360 CDLLQTSPVAYVTEDEDSEHLEMASYR--------------------------KMGPDGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
+|+.+..... .....+..+. .....|+|.+||.+|+|+++|...|..
T Consensus 148 ~D~~~~~~~~-------~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPANILQ-------ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCHHHHH-------HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 9987543111 1111111111 112348999999999999999987754
No 193
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.59 E-value=1.2e-14 Score=125.01 Aligned_cols=152 Identities=22% Similarity=0.147 Sum_probs=95.8
Q ss_pred EecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 242 LVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 242 ~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
++|++|+|||||++++.+..........|..+........ .+..+.+|||||...... .. .......++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~-~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS--------LR-RLYYRGADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh--------HH-HHHhcCCCE
Confidence 5899999999999999876552222223333333333332 256789999999864321 11 222344589
Q ss_pred EEEEEeCCCCCCCCHHHHHHH--HHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 320 ILFVHDLSGECGTSPSDQFTI--YKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l--~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
+++|+|++. +.+..+...+ .........+.|+++|+||+|+........ .............+++++|
T Consensus 72 ~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s 141 (157)
T cd00882 72 IILVYDVTD--RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSE--------EELAEQLAKELGVPYFETS 141 (157)
T ss_pred EEEEEECcC--HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHH--------HHHHHHHHhhcCCcEEEEe
Confidence 999999984 3444444433 122222235799999999999976542110 0011122233456899999
Q ss_pred cCCCCCHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVY 412 (435)
Q Consensus 398 A~~g~GI~eL~~~i~ 412 (435)
+.++.|++++++++.
T Consensus 142 ~~~~~~i~~~~~~l~ 156 (157)
T cd00882 142 AKTGENVEELFEELA 156 (157)
T ss_pred cCCCCChHHHHHHHh
Confidence 999999999999875
No 194
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.59 E-value=1.4e-14 Score=149.88 Aligned_cols=160 Identities=15% Similarity=0.076 Sum_probs=100.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc-------------------------------cccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE-------------------------------VCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~-------------------------------v~~~~~tT~~~~~~~~~~~~~ 284 (435)
+...++++|++++|||||+++|+..... ....+++|++.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4567999999999999999999732110 111578999999999988899
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
.+.+|||||+.+... .....+ ..+|++++|+|+++..+...+... .+..+... ...|+++|+||+|+..
T Consensus 85 ~i~liDtpG~~~~~~--------~~~~~~-~~aD~~ilVvDa~~~~~~~~~~~~-~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRDFVK--------NMITGA-SQADAAVLVVAADDAGGVMPQTRE-HVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCcccchh--------hHhhch-hcCCEEEEEEEcccCCCCCcchHH-HHHHHHHc-CCCeEEEEEEcccccc
Confidence 999999999754321 112222 235899999999842244444433 22233332 2247999999999975
Q ss_pred CCCccccchhhhHHHHHHHhhhhc--CCCcEEEcccCCCCCHHHHH
Q 037423 365 TSPVAYVTEDEDSEHLEMASYRKM--GPDGAIRVSVMNEEGLNELK 408 (435)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~vSA~~g~GI~eL~ 408 (435)
.... ...........+...... ...+++++||++|+|++++.
T Consensus 154 ~~~~--~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 154 YDEK--RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccHH--HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 3210 011111111111111111 12579999999999998743
No 195
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.58 E-value=2.8e-14 Score=134.68 Aligned_cols=156 Identities=13% Similarity=0.008 Sum_probs=94.7
Q ss_pred EEEEecCCCCChhhHHHHhhCCC-------------------------------CccccCCceeeeeeEEEEEeCCceEE
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK-------------------------------PEVCNYPFTTRGILMGHINLGYQNFQ 287 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~-------------------------------~~v~~~~~tT~~~~~~~~~~~~~~~~ 287 (435)
.|+++|++++|||||+.+|+... .......++|++.....+.+++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 37999999999999999985210 01112456889988889999999999
Q ss_pred EEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC-----CCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 288 ITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC-----GTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 288 liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~-----g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+|||||+.+.. ......+ +.+|++++|+|++... +...+.... ...... ...+|+++|+||+|+
T Consensus 81 liDtpG~~~~~--------~~~~~~~-~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~iiivvNK~Dl 149 (219)
T cd01883 81 ILDAPGHRDFV--------PNMITGA-SQADVAVLVVDARKGEFEAGFEKGGQTREH-ALLART-LGVKQLIVAVNKMDD 149 (219)
T ss_pred EEECCChHHHH--------HHHHHHh-hhCCEEEEEEECCCCccccccccccchHHH-HHHHHH-cCCCeEEEEEEcccc
Confidence 99999974321 1122222 3358999999998521 222233332 222322 234789999999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhh--cCCCcEEEcccCCCCCHH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRK--MGPDGAIRVSVMNEEGLN 405 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~vSA~~g~GI~ 405 (435)
...........+............. ....+++++||++|+|++
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 150 VTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 8431000011111111111111111 113579999999999987
No 196
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=124.26 Aligned_cols=163 Identities=23% Similarity=0.213 Sum_probs=117.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---CceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---YQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
..+++.++|++-||||+|+..++..++..-.-|..-.|+....++.. ..++++|||+|+.+ +...+..+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqer--------frsitksy 78 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQER--------FRSITKSY 78 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHH--------HHHHHHHH
Confidence 34689999999999999999999887643333444444443333332 25689999999854 33456666
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCc-EEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
+++. -++++|+|.+++ .+++....|..+..-.. +.++ +.+|+.|+||....++.. ++...++...
T Consensus 79 yrns-vgvllvyditnr--~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~---------EEaEklAa~h 146 (213)
T KOG0091|consen 79 YRNS-VGVLLVYDITNR--ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA---------EEAEKLAASH 146 (213)
T ss_pred hhcc-cceEEEEeccch--hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH---------HHHHHHHHhc
Confidence 6665 679999999965 67888888998877654 3344 568999999987654431 2334455555
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+..++++||++|.||++.++.+.+.+...
T Consensus 147 gM~FVETSak~g~NVeEAF~mlaqeIf~~ 175 (213)
T KOG0091|consen 147 GMAFVETSAKNGCNVEEAFDMLAQEIFQA 175 (213)
T ss_pred CceEEEecccCCCcHHHHHHHHHHHHHHH
Confidence 67899999999999999999888765443
No 197
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=141.04 Aligned_cols=177 Identities=24% Similarity=0.278 Sum_probs=115.7
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe------------------------CCceEEEEeCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL------------------------GYQNFQITDTPG 293 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~------------------------~~~~~~liDTpG 293 (435)
.+|+++|.||+|||||+|+|++..+.++++||+|.++..+.... ....++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 47999999999999999999998888899999999888876542 124578999999
Q ss_pred CCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC----------CCC-HHHHHH-----------------------
Q 037423 294 LLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC----------GTS-PSDQFT----------------------- 339 (435)
Q Consensus 294 ~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~----------g~s-~~~~~~----------------------- 339 (435)
+........ .+.......+++. |++++|+|+++.. ... ..+...
T Consensus 82 l~~ga~~g~-glg~~fL~~ir~a-d~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 82 LVPGAHEGR-GLGNQFLDDLRQA-DALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred cCCCccchh-hHHHHHHHHHHHC-CEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 976543322 1222233345554 8999999997211 000 000000
Q ss_pred -------------------------HHHHHHH----------------------hcCCCcEEEEEeccCCCCCCCccccc
Q 037423 340 -------------------------IYKEIKE----------------------RFSDHIWLDVVSKCDLLQTSPVAYVT 372 (435)
Q Consensus 340 -------------------------l~~~l~~----------------------~~~~~piIvV~NK~Dl~~~~~~~~~~ 372 (435)
+...+.+ ....+|+|+|+||+|+.....
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~----- 234 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE----- 234 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-----
Confidence 0000100 013489999999999763220
Q ss_pred hhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHH-HHHHHHHHHhcccccccCCCCCc
Q 037423 373 EDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNE-LKDRVYQMLVGQMDRIKSRSNED 429 (435)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~e-L~~~i~~~l~~~~~~~~t~~~~~ 429 (435)
....+..+ ....++++||+.+.|+++ +++.+.+.++....-.+....++
T Consensus 235 -----~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd 284 (396)
T PRK09602 235 -----NIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSE 284 (396)
T ss_pred -----HHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCH
Confidence 11222222 345799999999999999 88999888877765555544443
No 198
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=6.6e-14 Score=144.12 Aligned_cols=151 Identities=14% Similarity=0.041 Sum_probs=98.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC----------------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP----------------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~----------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+...++++|++++|||||+++|++... ......++|.+.....+..++.++.++||||+.+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~--- 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH---
Confidence 456799999999999999999985311 1222367888877777777788899999999742
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
+-......+.. +|++++|+|+. .|...++.. .+..+... +.| +|+|+||+|+.+.... .+....+
T Consensus 88 -----~~~~~~~~~~~-~D~~ilVvda~--~g~~~qt~~-~~~~~~~~--g~~~iIvvvNK~D~~~~~~~---~~~~~~~ 153 (409)
T CHL00071 88 -----YVKNMITGAAQ-MDGAILVVSAA--DGPMPQTKE-HILLAKQV--GVPNIVVFLNKEDQVDDEEL---LELVELE 153 (409)
T ss_pred -----HHHHHHHHHHh-CCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCEEEEEEEccCCCCHHHH---HHHHHHH
Confidence 11223344444 48999999988 566666655 44555554 678 7789999999754311 1111111
Q ss_pred HHHHHhhhh--cCCCcEEEcccCCCCC
Q 037423 379 HLEMASYRK--MGPDGAIRVSVMNEEG 403 (435)
Q Consensus 379 ~~~~~~~~~--~~~~~~i~vSA~~g~G 403 (435)
...+..... ....+++++||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 111111111 1136899999999863
No 199
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1.5e-13 Score=147.25 Aligned_cols=160 Identities=20% Similarity=0.188 Sum_probs=103.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCc---------c------ccCCceeeeeeEEEEEeC-----CceEEEEeCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPE---------V------CNYPFTTRGILMGHINLG-----YQNFQITDTPGLLQ 296 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~---------v------~~~~~tT~~~~~~~~~~~-----~~~~~liDTpG~~~ 296 (435)
-+.++++|+.++|||||+.+|+..... + ....+.|.......+.+. +..+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 467999999999999999999742110 0 112244544444444442 46789999999976
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhh
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDED 376 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~ 376 (435)
... ....++.. +|++++|+|++ .|...++...|... .. .+.|+++|+||+|+..... ...
T Consensus 87 F~~--------~v~~sl~~-aD~aILVVDas--~gv~~qt~~~~~~~-~~--~~lpiIvViNKiDl~~a~~-----~~v- 146 (600)
T PRK05433 87 FSY--------EVSRSLAA-CEGALLVVDAS--QGVEAQTLANVYLA-LE--NDLEIIPVLNKIDLPAADP-----ERV- 146 (600)
T ss_pred HHH--------HHHHHHHH-CCEEEEEEECC--CCCCHHHHHHHHHH-HH--CCCCEEEEEECCCCCcccH-----HHH-
Confidence 321 12233443 48899999998 56666666544433 33 2789999999999864321 111
Q ss_pred HHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 377 SEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
...+..........++++||++|.|+++|+++|.+.+...
T Consensus 147 --~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 --KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred --HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 1112222222223589999999999999999999887643
No 200
>PRK09866 hypothetical protein; Provisional
Probab=99.54 E-value=4.5e-13 Score=140.42 Aligned_cols=117 Identities=20% Similarity=0.141 Sum_probs=75.1
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..++++||||+...... .+.+.....+... |+|+||+|++ .+.+..+.. +.+.+.....+.|+++|+||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~---~L~k~M~eqL~eA-DvVLFVVDat--~~~s~~Dee-Ilk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP---HLQKMLNQQLARA-SAVLAVLDYT--QLKSISDEE-VREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccch---HHHHHHHHHHhhC-CEEEEEEeCC--CCCChhHHH-HHHHHHhcCCCCCEEEEEEcccCC
Confidence 45689999999764321 1333344455555 8999999987 345555544 667776652225999999999986
Q ss_pred CCCCccccchhhhHHHHHHH-hh---hhcCCCcEEEcccCCCCCHHHHHHHHHH
Q 037423 364 QTSPVAYVTEDEDSEHLEMA-SY---RKMGPDGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
+..... ........ .+ .......+|+|||++|.|++++++.|..
T Consensus 303 dreedd------kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 303 DRNSDD------ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred Ccccch------HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 433110 11111111 11 0112346999999999999999999987
No 201
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.54 E-value=1.9e-13 Score=126.63 Aligned_cols=161 Identities=19% Similarity=0.138 Sum_probs=117.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|||||+|+..+....+. ..|.+|.-+.+...+..++ ..+.|+||+|..+.+. +....+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~-~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~--------~~~~~~~ 73 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFV-EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA--------MRDLYIR 73 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccc-cccCCCccccceEEEEECCEEEEEEEEcCCCcccChH--------HHHHhhc
Confidence 468999999999999999999987764 4466777777777777765 4568999999544321 1222333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .++.++|+++++ ..+++....+...|.+.. ...|+++|+||+|+.....+.. .....+......+
T Consensus 74 ~-~~gF~lVysitd--~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~---------eeg~~la~~~~~~ 141 (196)
T KOG0395|consen 74 N-GDGFLLVYSITD--RSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSE---------EEGKALARSWGCA 141 (196)
T ss_pred c-CcEEEEEEECCC--HHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCH---------HHHHHHHHhcCCc
Confidence 4 388999999995 467888877777774421 3469999999999987543221 1122233444567
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||+...+++++|..+.+.+...
T Consensus 142 f~E~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 142 FIETSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred EEEeeccCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999999987663
No 202
>PRK12736 elongation factor Tu; Reviewed
Probab=99.54 E-value=1.3e-13 Score=141.40 Aligned_cols=164 Identities=16% Similarity=0.094 Sum_probs=105.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------C---------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------P---------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+...++++|+.++|||||+++|++.. . ......++|.+.....+..++..+.++||||+.+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH--
Confidence 45679999999999999999997521 0 11125678888876666667788999999997421
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
-......+. .+|++++|+|++ .|...++.. .+..+... +.| +|+|+||+|+.+.+... +....+
T Consensus 89 ------~~~~~~~~~-~~d~~llVvd~~--~g~~~~t~~-~~~~~~~~--g~~~~IvviNK~D~~~~~~~~---~~i~~~ 153 (394)
T PRK12736 89 ------VKNMITGAA-QMDGAILVVAAT--DGPMPQTRE-HILLARQV--GVPYLVVFLNKVDLVDDEELL---ELVEME 153 (394)
T ss_pred ------HHHHHHHHh-hCCEEEEEEECC--CCCchhHHH-HHHHHHHc--CCCEEEEEEEecCCcchHHHH---HHHHHH
Confidence 112233332 358999999988 456566554 44455554 677 67899999997533111 111111
Q ss_pred HHHHHhhhh--cCCCcEEEcccCCCC--------CHHHHHHHHHHHHh
Q 037423 379 HLEMASYRK--MGPDGAIRVSVMNEE--------GLNELKDRVYQMLV 416 (435)
Q Consensus 379 ~~~~~~~~~--~~~~~~i~vSA~~g~--------GI~eL~~~i~~~l~ 416 (435)
...+..... ....+++++||++|. ++.+|++.+.+.+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 111111111 113589999999983 57788888877664
No 203
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.54 E-value=2.6e-13 Score=126.48 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=96.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-------CceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-------YQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-------~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
+|+++|.+|||||||++++....+.....+....+.....+.++ ...+.+|||+|.... ..+...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~--------~~l~~~ 73 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV--------KSTRAV 73 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH--------HHHHHH
Confidence 68999999999999999999877643332222222333333432 246899999998542 223333
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--------------------CCCcEEEEEeccCCCCCCCcccc
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--------------------SDHIWLDVVSKCDLLQTSPVAYV 371 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--------------------~~~piIvV~NK~Dl~~~~~~~~~ 371 (435)
++.. ++++++|+|+++ ..+++....|+.++.... .+.|+++|+||+|+.+......
T Consensus 74 ~yr~-ad~iIlVyDvtn--~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~- 149 (202)
T cd04102 74 FYNQ-VNGIILVHDLTN--RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSG- 149 (202)
T ss_pred HhCc-CCEEEEEEECcC--hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccch-
Confidence 4444 599999999995 467888888999887531 3579999999999976432211
Q ss_pred chhhhHHHHHHHhhhhcCCCcEEEcccCCCC
Q 037423 372 TEDEDSEHLEMASYRKMGPDGAIRVSVMNEE 402 (435)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~ 402 (435)
.........++...+.+.+.+++....
T Consensus 150 ----~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 150 ----NLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred ----HHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 001111223344456678888888653
No 204
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.53 E-value=1.1e-13 Score=128.56 Aligned_cols=171 Identities=16% Similarity=0.104 Sum_probs=100.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCcc--c---cCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEV--C---NYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v--~---~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
.+|+++|.+|+|||||+|++++..... . ....+|.... .+.. ....+.+|||||+.+......+.++ .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~----~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDDYLE----E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHHHHH----H
Confidence 469999999999999999998743211 1 1111232221 1111 1346899999999764332222111 1
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccc-----cchhhhHHHH-HHHhh
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAY-----VTEDEDSEHL-EMASY 385 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~-----~~~~~~~~~~-~~~~~ 385 (435)
......|++++|.| .+++..+.. +++.+... ++|+++|+||+|+........ ..++...... .....
T Consensus 76 ~~~~~~d~~l~v~~----~~~~~~d~~-~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 76 MKFSEYDFFIIISS----TRFSSNDVK-LAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred hCccCcCEEEEEeC----CCCCHHHHH-HHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 11122376777643 235555554 77777775 789999999999965432110 0111111111 11111
Q ss_pred hh---cCCCcEEEcccC--CCCCHHHHHHHHHHHHhccccc
Q 037423 386 RK---MGPDGAIRVSVM--NEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 386 ~~---~~~~~~i~vSA~--~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
.. ....++|.+|+. .+.|+..|.+.+...+.+..+.
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~ 189 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH 189 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence 11 233578999998 6799999999999998876543
No 205
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.53 E-value=4e-13 Score=143.60 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=97.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC------------------CceEEEEeCCCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG------------------YQNFQITDTPGLLQ 296 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 296 (435)
.+.|.|+++|++|+|||||++++.+.........+.|.+......... -..+.+|||||+.+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 467899999999999999999998654322222223332211111110 01278999999854
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc---ccc-
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVA---YVT- 372 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~---~~~- 372 (435)
.. ......+ ..+|++++|+|++ .|...+... .+..+.. .+.|+++|+||+|+....... ...
T Consensus 84 f~--------~~~~~~~-~~aD~~IlVvDa~--~g~~~qt~e-~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 84 FT--------NLRKRGG-ALADIAILVVDIN--EGFQPQTIE-AINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred HH--------HHHHHhH-hhCCEEEEEEECC--CCCCHhHHH-HHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 32 1122222 3358999999998 455555544 3344444 378999999999986321000 000
Q ss_pred ----------hhhhHHHHHHHh-hh--------------hcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 373 ----------EDEDSEHLEMAS-YR--------------KMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 373 ----------~~~~~~~~~~~~-~~--------------~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
..+......+.. +. .....+++++||++|+|+++|++.+....
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000000000000 00 01235799999999999999999887544
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.53 E-value=3.7e-13 Score=143.90 Aligned_cols=162 Identities=19% Similarity=0.146 Sum_probs=109.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCCC--C----c----------cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGK--P----E----------VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED 301 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~--~----~----------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 301 (435)
+.|+++|+.++|||||+++|+... + . .....+.|.......+.+++.++.+|||||+.+..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~--- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG--- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---
Confidence 469999999999999999997421 1 0 11223567777777788899999999999986532
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHH
Q 037423 302 RNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLE 381 (435)
Q Consensus 302 ~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~ 381 (435)
.....++.. .|++++|+|++ .|...+... ++..+... +.|+|+|+||+|+..... .+...+...
T Consensus 79 -----~ev~~~l~~-aD~alLVVDa~--~G~~~qT~~-~l~~a~~~--~ip~IVviNKiD~~~a~~-----~~v~~ei~~ 142 (594)
T TIGR01394 79 -----GEVERVLGM-VDGVLLLVDAS--EGPMPQTRF-VLKKALEL--GLKPIVVINKIDRPSARP-----DEVVDEVFD 142 (594)
T ss_pred -----HHHHHHHHh-CCEEEEEEeCC--CCCcHHHHH-HHHHHHHC--CCCEEEEEECCCCCCcCH-----HHHHHHHHH
Confidence 122333433 48999999998 455555544 56666664 789999999999865431 111111111
Q ss_pred -HHhhh---hcCCCcEEEcccCCCC----------CHHHHHHHHHHHHhcc
Q 037423 382 -MASYR---KMGPDGAIRVSVMNEE----------GLNELKDRVYQMLVGQ 418 (435)
Q Consensus 382 -~~~~~---~~~~~~~i~vSA~~g~----------GI~eL~~~i~~~l~~~ 418 (435)
+..+. .....|++++||++|. |++.|++.|.+.++..
T Consensus 143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 11110 1123589999999995 8999999999988654
No 207
>PLN03127 Elongation factor Tu; Provisional
Probab=99.52 E-value=2.3e-13 Score=141.19 Aligned_cols=165 Identities=16% Similarity=0.104 Sum_probs=106.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC------C----------CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG------K----------PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~------~----------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
.+...|+++|+.++|||||+++|.+. . ......+++|.+.....+..++.++.++||||+.+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 34567999999999999999999621 1 0122347889998888887788899999999985421
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhH
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
..+...+.. +|++++|+|++ .|...++.. .+..+... +.| +|+|+||+|+.+.... .+....
T Consensus 139 --------~~~~~g~~~-aD~allVVda~--~g~~~qt~e-~l~~~~~~--gip~iIvviNKiDlv~~~~~---~~~i~~ 201 (447)
T PLN03127 139 --------KNMITGAAQ-MDGGILVVSAP--DGPMPQTKE-HILLARQV--GVPSLVVFLNKVDVVDDEEL---LELVEM 201 (447)
T ss_pred --------HHHHHHHhh-CCEEEEEEECC--CCCchhHHH-HHHHHHHc--CCCeEEEEEEeeccCCHHHH---HHHHHH
Confidence 112223333 59999999987 566666654 45555554 678 5789999999753211 111111
Q ss_pred HHHHHHhhhh--cCCCcEEEcccC---CCCC-------HHHHHHHHHHHHh
Q 037423 378 EHLEMASYRK--MGPDGAIRVSVM---NEEG-------LNELKDRVYQMLV 416 (435)
Q Consensus 378 ~~~~~~~~~~--~~~~~~i~vSA~---~g~G-------I~eL~~~i~~~l~ 416 (435)
+...+..+.. ....|++++||. +|.| +.+|++.+.+.+.
T Consensus 202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 1112222111 123678898886 4555 7788888887764
No 208
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.52 E-value=2.2e-13 Score=118.87 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=87.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.+++++|+.|+|||||+++|.+..... .-|..+ .+.+ .+|||||-.-.. +. ...++......+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~----~KTq~i-----~~~~---~~IDTPGEyiE~---~~--~y~aLi~ta~da 64 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY----KKTQAI-----EYYD---NTIDTPGEYIEN---PR--FYHALIVTAQDA 64 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc----Ccccee-----Eecc---cEEECChhheeC---HH--HHHHHHHHHhhC
Confidence 479999999999999999998765421 122222 2222 369999953211 11 112222333345
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
|+|++|.|++.....-... +...| ++|+|-|+||+|+...... .... .... ...+..++|++|
T Consensus 65 d~V~ll~dat~~~~~~pP~-------fa~~f-~~pvIGVITK~Dl~~~~~~------i~~a-~~~L--~~aG~~~if~vS 127 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPG-------FASMF-NKPVIGVITKIDLPSDDAN------IERA-KKWL--KNAGVKEIFEVS 127 (143)
T ss_pred CEEEEEecCCCCCccCCch-------hhccc-CCCEEEEEECccCccchhh------HHHH-HHHH--HHcCCCCeEEEE
Confidence 8999999999642221111 12223 6899999999999843211 1111 1111 122334689999
Q ss_pred cCCCCCHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVY 412 (435)
Q Consensus 398 A~~g~GI~eL~~~i~ 412 (435)
+.+|+||++|.++|.
T Consensus 128 ~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 128 AVTGEGIEELKDYLE 142 (143)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999999875
No 209
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.52 E-value=1.8e-14 Score=124.85 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=114.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
-.++++++|..-||||||+-++...++.-.........+....+.+++ ..+.||||+|+.+.. .+.--++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfH--------ALGPIYY 83 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFH--------ALGPIYY 83 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhh--------ccCceEE
Confidence 357899999999999999999987765322111111112222223333 457899999986532 1222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC-CcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD-HIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~-~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+ ..+.+++|+|+++ ..+++....|..+++....+ .-+++|+||+||.....+ ..+....|+...+..
T Consensus 84 R-gSnGalLVyDITD--rdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V---------t~qeAe~YAesvGA~ 151 (218)
T KOG0088|consen 84 R-GSNGALLVYDITD--RDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV---------TRQEAEAYAESVGAL 151 (218)
T ss_pred e-CCCceEEEEeccc--hHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh---------hHHHHHHHHHhhchh
Confidence 3 3478999999995 46789999999999987643 678999999999765432 234455666666778
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||+.+.||.++|+.++..+.+.
T Consensus 152 y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 152 YMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred heecccccccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999866443
No 210
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.52 E-value=5.7e-13 Score=127.30 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=78.9
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC------cc------------ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP------EV------------CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~------~v------------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
.|+++|++|+|||||+++|+.... .+ ....+.|.......+.+++.++.+|||||+.+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~- 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA- 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH-
Confidence 378999999999999999974211 00 11223455556677788899999999999965321
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
....++.. .|++++|+|++ .+...+... ++..+... ++|+++|+||+|+...
T Consensus 80 -------~~~~~l~~-aD~~IlVvd~~--~g~~~~~~~-~~~~~~~~--~~P~iivvNK~D~~~a 131 (237)
T cd04168 80 -------EVERSLSV-LDGAILVISAV--EGVQAQTRI-LWRLLRKL--NIPTIIFVNKIDRAGA 131 (237)
T ss_pred -------HHHHHHHH-hCeEEEEEeCC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECccccCC
Confidence 23334444 38899999998 455554443 55656554 7899999999998753
No 211
>PRK12735 elongation factor Tu; Reviewed
Probab=99.52 E-value=2.3e-13 Score=139.60 Aligned_cols=164 Identities=16% Similarity=0.154 Sum_probs=104.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC-------CC---------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG-------KP---------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~-------~~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+...++++|++++|||||+++|++. .. ......++|.+.....+..++..+.++||||+.+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~--- 87 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD--- 87 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH---
Confidence 4567999999999999999999851 11 1122457788877777777778899999999842
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEE-EEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWL-DVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piI-vV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
+-..+...+. .+|++++|+|+. .|...+... .+..+... +.|.+ +|+||+|+.+.... .+....+
T Consensus 88 -----f~~~~~~~~~-~aD~~llVvda~--~g~~~qt~e-~l~~~~~~--gi~~iivvvNK~Dl~~~~~~---~~~~~~e 153 (396)
T PRK12735 88 -----YVKNMITGAA-QMDGAILVVSAA--DGPMPQTRE-HILLARQV--GVPYIVVFLNKCDMVDDEEL---LELVEME 153 (396)
T ss_pred -----HHHHHHhhhc-cCCEEEEEEECC--CCCchhHHH-HHHHHHHc--CCCeEEEEEEecCCcchHHH---HHHHHHH
Confidence 1122233333 358999999998 455555544 34444443 67855 67999999753211 1111111
Q ss_pred HHHHHhhhhc--CCCcEEEcccCCC----------CCHHHHHHHHHHHHh
Q 037423 379 HLEMASYRKM--GPDGAIRVSVMNE----------EGLNELKDRVYQMLV 416 (435)
Q Consensus 379 ~~~~~~~~~~--~~~~~i~vSA~~g----------~GI~eL~~~i~~~l~ 416 (435)
...+...... ...+++++||++| .|+.+|++.+.+.+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 1111111111 1368999999998 478888888887654
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.51 E-value=2.3e-13 Score=140.91 Aligned_cols=156 Identities=14% Similarity=0.061 Sum_probs=96.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC--C-----------------------------ccccCCceeeeeeEEEEEeCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK--P-----------------------------EVCNYPFTTRGILMGHINLGY 283 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~--~-----------------------------~v~~~~~tT~~~~~~~~~~~~ 283 (435)
.+...|+++|+.++|||||+++|+... . ......++|.+.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 356789999999999999999987421 0 011234788888888888888
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCC-CCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECG-TSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g-~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
..+.+|||||+.+. .......+. .+|++++|+|++.... ...+... .. .+.......|+|+|+||+|+
T Consensus 85 ~~i~iiDtpGh~~f--------~~~~~~~~~-~aD~~ilVvDa~~~~~~~~~~t~~-~~-~~~~~~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 85 YEVTIVDCPGHRDF--------IKNMITGAS-QADAAVLVVAVGDGEFEVQPQTRE-HA-FLARTLGINQLIVAINKMDS 153 (426)
T ss_pred eEEEEEECCCHHHH--------HHHHHhhhh-hCCEEEEEEECCCCCcccCCchHH-HH-HHHHHcCCCeEEEEEEChhc
Confidence 99999999997431 111222233 3589999999985311 1112211 11 22222234679999999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhhc-----CCCcEEEcccCCCCCHHH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRKM-----GPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~vSA~~g~GI~e 406 (435)
.+.... ........+..+... ...+++++||++|.|+++
T Consensus 154 ~~~~~~-----~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 154 VNYDEE-----EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred cCccHH-----HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 753211 111111122222211 125799999999999986
No 213
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.51 E-value=4e-13 Score=138.20 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=96.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc---cccCCceeeeeeEEEEE--------------------------eCCceE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE---VCNYPFTTRGILMGHIN--------------------------LGYQNF 286 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~---v~~~~~tT~~~~~~~~~--------------------------~~~~~~ 286 (435)
+..+|+++|++++|||||+++|.+.... .....+.|.+.....+. ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3457999999999999999999753211 11112333332211110 014678
Q ss_pred EEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 287 QITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGT-SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 287 ~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~-s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.+|||||+.+. ........ ..+|++++|+|+++ +. ..+... .+..+... ..+|+++|+||+|+.+.
T Consensus 83 ~liDtPGh~~f--------~~~~~~g~-~~aD~aIlVVDa~~--g~~~~qt~e-~l~~l~~~-gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 83 SFVDAPGHETL--------MATMLSGA-ALMDGALLVIAANE--PCPQPQTKE-HLMALEII-GIKNIVIVQNKIDLVSK 149 (406)
T ss_pred EEEECCCHHHH--------HHHHHHHH-HHCCEEEEEEECCC--CccccchHH-HHHHHHHc-CCCeEEEEEEccccCCH
Confidence 99999998432 11122222 23589999999984 33 233333 22333332 24679999999999764
Q ss_pred CCccccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 366 SPVAYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.... + ....+..+.. ....+++++||++|+|+++|+++|...+.
T Consensus 150 ~~~~----~---~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 150 EKAL----E---NYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHH----H---HHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 3110 0 1111112211 12457999999999999999999998764
No 214
>PRK10218 GTP-binding protein; Provisional
Probab=99.50 E-value=3.3e-13 Score=144.31 Aligned_cols=163 Identities=16% Similarity=0.111 Sum_probs=110.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC--Cc--------------cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK--PE--------------VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~--~~--------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
-++|+++|+.++|||||+++++... +. .....+.|.......+.+++..+.+|||||+.+...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~- 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG- 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH-
Confidence 4679999999999999999998521 10 112345677777777888899999999999876432
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHH
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHL 380 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~ 380 (435)
....++.. .|++++|+|++ .|...+... ++..+... +.|.++|+||+|+...... ....+..
T Consensus 84 -------~v~~~l~~-aDg~ILVVDa~--~G~~~qt~~-~l~~a~~~--gip~IVviNKiD~~~a~~~-----~vl~ei~ 145 (607)
T PRK10218 84 -------EVERVMSM-VDSVLLVVDAF--DGPMPQTRF-VTKKAFAY--GLKPIVVINKVDRPGARPD-----WVVDQVF 145 (607)
T ss_pred -------HHHHHHHh-CCEEEEEEecc--cCccHHHHH-HHHHHHHc--CCCEEEEEECcCCCCCchh-----HHHHHHH
Confidence 22333433 48999999998 455555555 34444443 7899999999998754311 1111111
Q ss_pred HHH-h--h-hhcCCCcEEEcccCCCC----------CHHHHHHHHHHHHhcc
Q 037423 381 EMA-S--Y-RKMGPDGAIRVSVMNEE----------GLNELKDRVYQMLVGQ 418 (435)
Q Consensus 381 ~~~-~--~-~~~~~~~~i~vSA~~g~----------GI~eL~~~i~~~l~~~ 418 (435)
.+. . . ......|++++||++|. |+..|++.|.+.++..
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 111 1 0 01123689999999998 6899999998887654
No 215
>PTZ00258 GTP-binding protein; Provisional
Probab=99.50 E-value=6.7e-13 Score=134.40 Aligned_cols=91 Identities=25% Similarity=0.346 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-----------------eEEEEeCCCCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-----------------NFQITDTPGLLQR 297 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~ 297 (435)
....+|+++|.||+|||||+|+|++....++++||||+++..+.+.+.+. .+.++||||+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35678999999999999999999998899999999999999998877643 4899999999865
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCC
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLS 327 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s 327 (435)
..... .+.......++. +|++++|+|+.
T Consensus 99 a~~g~-gLg~~fL~~Ir~-aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGE-GLGNAFLSHIRA-VDGIYHVVRAF 126 (390)
T ss_pred Ccchh-HHHHHHHHHHHH-CCEEEEEEeCC
Confidence 44321 222233334444 49999999985
No 216
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.4e-13 Score=139.33 Aligned_cols=167 Identities=18% Similarity=0.153 Sum_probs=120.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---CceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---YQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
.+.|.|+++|+-..|||||+..+.+.+......-+.|..+...++..+ ...+.|+||||+.-+. .+..
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt---------~mRa 73 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT---------AMRA 73 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH---------HHHh
Confidence 467899999999999999999998888777777788999888888874 4689999999985321 1111
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
--...+|.+++|+|+. +|.-.|... -...++.. +.|+++++||+|..+.+... ...++.+. .+..-...+..
T Consensus 74 RGa~vtDIaILVVa~d--DGv~pQTiE-AI~hak~a--~vP~iVAiNKiDk~~~np~~-v~~el~~~--gl~~E~~gg~v 145 (509)
T COG0532 74 RGASVTDIAILVVAAD--DGVMPQTIE-AINHAKAA--GVPIVVAINKIDKPEANPDK-VKQELQEY--GLVPEEWGGDV 145 (509)
T ss_pred cCCccccEEEEEEEcc--CCcchhHHH-HHHHHHHC--CCCEEEEEecccCCCCCHHH-HHHHHHHc--CCCHhhcCCce
Confidence 1234579999999998 788888876 45566664 89999999999998654211 00111100 01001112235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.++++||++|+|+++|++.+.-..+-.
T Consensus 146 ~~VpvSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 146 IFVPVSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999988765544
No 217
>PRK00049 elongation factor Tu; Reviewed
Probab=99.49 E-value=4.5e-13 Score=137.34 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=105.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------C---------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------P---------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+...++++|+.++|||||+++|++.. . ......++|.+.....+..++..+.++||||+.+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~--- 87 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD--- 87 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH---
Confidence 45679999999999999999998521 0 1112567888887777766778899999999842
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEE-EEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWL-DVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piI-vV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
+-......+ ..+|++++|+|++ .|...++.. ++..+... +.|.+ +|+||+|+.+.... .+.....
T Consensus 88 -----f~~~~~~~~-~~aD~~llVVDa~--~g~~~qt~~-~~~~~~~~--g~p~iiVvvNK~D~~~~~~~---~~~~~~~ 153 (396)
T PRK00049 88 -----YVKNMITGA-AQMDGAILVVSAA--DGPMPQTRE-HILLARQV--GVPYIVVFLNKCDMVDDEEL---LELVEME 153 (396)
T ss_pred -----HHHHHHhhh-ccCCEEEEEEECC--CCCchHHHH-HHHHHHHc--CCCEEEEEEeecCCcchHHH---HHHHHHH
Confidence 111222333 3459999999988 566666655 44555554 68876 68999999753211 1111111
Q ss_pred HHHHHhhhh--cCCCcEEEcccCCCC----------CHHHHHHHHHHHHh
Q 037423 379 HLEMASYRK--MGPDGAIRVSVMNEE----------GLNELKDRVYQMLV 416 (435)
Q Consensus 379 ~~~~~~~~~--~~~~~~i~vSA~~g~----------GI~eL~~~i~~~l~ 416 (435)
...+..... ....+++++||++|. |+..|++.|.+.+.
T Consensus 154 i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 154 VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 111111111 123689999999875 57788888877654
No 218
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.9e-13 Score=136.96 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=119.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC---------------CCccccCCceeeeeeEEEEEeCC---ceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG---------------KPEVCNYPFTTRGILMGHINLGY---QNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~---------------~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~ 297 (435)
+-+.+.+|.+-..|||||..+|+.- +..+....|.|.......+.|.+ ..+.+|||||+.+.
T Consensus 59 ~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 59 NIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 4456899999999999999998731 12344566778777777777766 77899999999988
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhH
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
..+.. ..+.. ++++++|+|++ .|...|....++..+.. +..+|.|+||+|+...+.. .
T Consensus 139 s~EVs--------Rslaa-c~G~lLvVDA~--qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe--------~ 196 (650)
T KOG0462|consen 139 SGEVS--------RSLAA-CDGALLVVDAS--QGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPE--------R 196 (650)
T ss_pred cceeh--------ehhhh-cCceEEEEEcC--cCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHH--------H
Confidence 65432 11222 47899999999 78888888766555544 7889999999999877521 1
Q ss_pred HHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 378 EHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 378 ~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
....+.+.......+++.+||++|.|+++++++|.+.++.-
T Consensus 197 V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 197 VENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred HHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCC
Confidence 12233344445566899999999999999999999987654
No 219
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.49 E-value=4.5e-13 Score=137.82 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=95.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCc---------------------------------cccCCceeeeeeEEEEEeCCce
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPE---------------------------------VCNYPFTTRGILMGHINLGYQN 285 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~---------------------------------v~~~~~tT~~~~~~~~~~~~~~ 285 (435)
+++++|+.++|||||+.+|+...-. .....+.|.+.....+.+++.+
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 5899999999999999998632100 0012345678777888888889
Q ss_pred EEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 286 FQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 286 ~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
+.++||||+.+.. ......+. .+|++++|+|++ .|...++... +..+... ...++|+|+||+|+...
T Consensus 82 ~~liDtPGh~~f~--------~~~~~~~~-~aD~allVVda~--~G~~~qt~~~-~~~~~~~-~~~~iivviNK~D~~~~ 148 (406)
T TIGR02034 82 FIVADTPGHEQYT--------RNMATGAS-TADLAVLLVDAR--KGVLEQTRRH-SYIASLL-GIRHVVLAVNKMDLVDY 148 (406)
T ss_pred EEEEeCCCHHHHH--------HHHHHHHh-hCCEEEEEEECC--CCCccccHHH-HHHHHHc-CCCcEEEEEEecccccc
Confidence 9999999974321 11222333 358999999988 5665555442 2223332 23568999999999753
Q ss_pred CCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHH
Q 037423 366 SPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~e 406 (435)
.. ...++.......+.........+++++||++|+|+++
T Consensus 149 ~~--~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 149 DE--EVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred hH--HHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 31 1111111111111111111235799999999999986
No 220
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.48 E-value=1e-12 Score=135.32 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=98.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEEEEe---------------------C-----Cce
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGHINL---------------------G-----YQN 285 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~~~~---------------------~-----~~~ 285 (435)
.+..+++++|+.++|||||+.+|.+... ......+.|.+.......+ + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 3456799999999999999999965311 1111234555443221111 0 257
Q ss_pred EEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 286 FQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGT-SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 286 ~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~-s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
+.+|||||+.+. ......... ..|++++|+|++. +. ..+... .+..+... ...|+++|+||+|+.+
T Consensus 87 i~liDtPG~~~f--------~~~~~~~~~-~~D~~llVVDa~~--~~~~~~t~~-~l~~l~~~-~i~~iiVVlNK~Dl~~ 153 (411)
T PRK04000 87 VSFVDAPGHETL--------MATMLSGAA-LMDGAILVIAANE--PCPQPQTKE-HLMALDII-GIKNIVIVQNKIDLVS 153 (411)
T ss_pred EEEEECCCHHHH--------HHHHHHHHh-hCCEEEEEEECCC--CCCChhHHH-HHHHHHHc-CCCcEEEEEEeecccc
Confidence 899999997321 111222222 2488999999984 33 333333 23333332 2357999999999976
Q ss_pred CCCccccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 365 TSPVAYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.... ......+..+.. ....+++++||++|.|+++|++.|.+.+..
T Consensus 154 ~~~~-------~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 154 KERA-------LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred chhH-------HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 4311 111111222221 123579999999999999999999987643
No 221
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.47 E-value=2.7e-12 Score=112.30 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=114.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+|.++|..|+||||++++|.+.... .-..|.......+.+++..+.+||..|.... ..+...+++.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~---~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~l--------r~~W~nYfes 83 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTD---TISPTLGFQIKTLEYKGYTLNIWDVGGQKTL--------RSYWKNYFES 83 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcc---ccCCccceeeEEEEecceEEEEEEcCCcchh--------HHHHHHhhhc
Confidence 4678999999999999999999987531 2234677788888899999999999998542 3344455555
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHH--HhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIK--ERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~--~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. |++++|+|.+++ ...++-...+..+. +...+.|++++.||.|+...-.. +.......+..+......++
T Consensus 84 t-dglIwvvDssD~--~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~-----~~i~~~~~L~~l~ks~~~~l 155 (185)
T KOG0073|consen 84 T-DGLIWVVDSSDR--MRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL-----EEISKALDLEELAKSHHWRL 155 (185)
T ss_pred c-CeEEEEEECchH--HHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH-----HHHHHhhCHHHhccccCceE
Confidence 4 899999999843 44444333333322 22357899999999999844211 11111223344434455789
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+.|||.+|+|+.+-++|++.-+.+
T Consensus 156 ~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 156 VKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred EEEeccccccHHHHHHHHHHHHHH
Confidence 999999999999999999987655
No 222
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=1.4e-12 Score=127.72 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=93.5
Q ss_pred HhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhH
Q 037423 226 TLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNN 304 (435)
Q Consensus 226 ~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 304 (435)
.+++++..+.+..+|+++|.+|+||||++|++++... .++....+|..........++.++.+|||||+.+........
T Consensus 27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~ 106 (313)
T TIGR00991 27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQA 106 (313)
T ss_pred HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHH
Confidence 4566677777889999999999999999999998764 455555555444444455678999999999998753222111
Q ss_pred HHHHHHHHH-hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCCCCCC
Q 037423 305 LEKLTLAVL-THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD---HIWLDVVSKCDLLQTS 366 (435)
Q Consensus 305 ie~~~~~~l-~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~---~piIvV~NK~Dl~~~~ 366 (435)
. .....++ ....|+++||.+++.. ..+..+.. +++.+.+.|.. .++|+|+|++|....+
T Consensus 107 ~-~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~Dkq-lLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 107 V-NIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQ-VIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred H-HHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHH-HHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 1 1112222 2346899999665432 34444443 67777776632 6789999999987554
No 223
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2e-13 Score=118.51 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=106.9
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-----------CceEEEEeCCCCCCCCchhhhHHHHH
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-----------YQNFQITDTPGLLQRRDEDRNNLEKL 308 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-----------~~~~~liDTpG~~~~~~~~~~~ie~~ 308 (435)
...+|.+|||||+++...+..++...-....-.|+....+-++ ...+++|||+|+.+ +..+
T Consensus 12 fLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER--------FRSL 83 (219)
T KOG0081|consen 12 FLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER--------FRSL 83 (219)
T ss_pred HHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHH--------HHHH
Confidence 4567999999999999988776532211111122222233221 14579999999854 3345
Q ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh
Q 037423 309 TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR 386 (435)
Q Consensus 309 ~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 386 (435)
+..+++.. -..++++|.++ ..++-+...|+..++-.. .+--+|+++||+||.+...+. .......+
T Consensus 84 TTAFfRDA-MGFlLiFDlT~--eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs---------~~qa~~La 151 (219)
T KOG0081|consen 84 TTAFFRDA-MGFLLIFDLTS--EQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS---------EDQAAALA 151 (219)
T ss_pred HHHHHHhh-ccceEEEeccc--hHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh---------HHHHHHHH
Confidence 55555544 56899999994 467788888998887653 445589999999998765322 12334455
Q ss_pred hcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 387 KMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 387 ~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
...+.|+|++||-+|.||++..+.+...+-
T Consensus 152 ~kyglPYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 152 DKYGLPYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred HHhCCCeeeeccccCcCHHHHHHHHHHHHH
Confidence 566789999999999999988877776543
No 224
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.1e-12 Score=124.47 Aligned_cols=181 Identities=21% Similarity=0.175 Sum_probs=115.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...-.+.++|.+|+||||++|+|+.... .++..+-+|.........+++..+.+|||||+.+....+.+ .+......+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~-~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE-HRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH-HHHHHHHHh
Confidence 3445677999999999999999996544 44444444444444444566788999999999986544322 233334444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc--------ccchhhh-HHHHHHHh
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVA--------YVTEDED-SEHLEMAS 384 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~--------~~~~~~~-~~~~~~~~ 384 (435)
... |++++++|+.++.--...+ ++..+.-...++++++|+|.+|...+.... ....+.. +......+
T Consensus 116 ~~~-DLvL~l~~~~draL~~d~~---f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 116 PKL-DLVLWLIKADDRALGTDED---FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred hhc-cEEEEeccCCCccccCCHH---HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 444 8899999998653222222 344444444468999999999987652111 1111111 11222333
Q ss_pred hhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 385 YRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 385 ~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
+++. ..|++.+|...+-|++++..++.+++....+.
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs 227 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALPVEARS 227 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCcccccc
Confidence 3333 35899999999999999999999998765443
No 225
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.46 E-value=9.4e-13 Score=137.75 Aligned_cols=159 Identities=16% Similarity=0.068 Sum_probs=96.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCcc---------------c------------------cCCceeeeeeEEEEEe
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEV---------------C------------------NYPFTTRGILMGHINL 281 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v---------------~------------------~~~~tT~~~~~~~~~~ 281 (435)
....+++++|++++|||||+++|+...-.+ + ...+.|.+.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 345789999999999999999987432100 0 0123456776677777
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
++..+.+|||||+.+. .......+ ..+|++++|+|++ .|...++...+ ..+... ..+|+|+|+||+|
T Consensus 105 ~~~~i~~iDTPGh~~f--------~~~~~~~l-~~aD~allVVDa~--~G~~~qt~~~~-~l~~~l-g~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHEQY--------TRNMATGA-STCDLAILLIDAR--KGVLDQTRRHS-FIATLL-GIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcHHH--------HHHHHHHH-hhCCEEEEEEECC--CCccccchHHH-HHHHHh-CCCceEEEEEeec
Confidence 8889999999996421 11222233 4459999999988 45544443322 222222 2357999999999
Q ss_pred CCCCCCccccchhhhHHHHHHH-hhhhcCCCcEEEcccCCCCCHHHHH
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMA-SYRKMGPDGAIRVSVMNEEGLNELK 408 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~vSA~~g~GI~eL~ 408 (435)
+...... ...+.......+. .+......+++++||++|.|++++.
T Consensus 172 ~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 172 LVDYSEE--VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred cccchhH--HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 9753311 1111111111111 1100124689999999999998753
No 226
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.46 E-value=1.7e-12 Score=126.40 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=82.4
Q ss_pred EEEEecCCCCChhhHHHHhhC---CCC---c------------cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch
Q 037423 239 TLCLVGAPNVGKSSLVRVIST---GKP---E------------VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~---~~~---~------------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
.|+++|++|+|||||+++|+. ... . .....++|.+....++.+++.++.+|||||+.+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 379999999999999999862 110 1 11244678888888899999999999999986421
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.....++... |++++|+|++ .|...++.. ++..+... ++|+++|+||+|+...
T Consensus 79 ------~~~~~~l~~a-D~ailVVDa~--~g~~~~t~~-~~~~~~~~--~~p~ivviNK~D~~~a 131 (270)
T cd01886 79 ------IEVERSLRVL-DGAVAVFDAV--AGVEPQTET-VWRQADRY--NVPRIAFVNKMDRTGA 131 (270)
T ss_pred ------HHHHHHHHHc-CEEEEEEECC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 1233444444 8999999988 456566554 55556554 7899999999998754
No 227
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.46 E-value=3.2e-12 Score=119.81 Aligned_cols=171 Identities=18% Similarity=0.098 Sum_probs=107.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+++++|.+|+|||||++++.+..+.....+.............. ...+.+|||+|+.+ +..+...+. .
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~--------~~~~~~~y~-~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE--------YRSLRPEYY-R 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHH--------HHHHHHHHh-c
Confidence 689999999999999999999877643333322222221111111 35689999999853 222333333 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchh------hhHHHHHHHhhhhc
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTED------EDSEHLEMASYRKM 388 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~------~~~~~~~~~~~~~~ 388 (435)
.++++++++|.+.. ....+....|...+..... +.|+++|+||+|+............ ..............
T Consensus 77 ~~~~~l~~~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (219)
T COG1100 77 GANGILIVYDSTLR-ESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEV 155 (219)
T ss_pred CCCEEEEEEecccc-hhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhh
Confidence 45889999998852 2344555568888888753 5899999999999876432111000 00000011111111
Q ss_pred CCCcEEEcccC--CCCCHHHHHHHHHHHHhcc
Q 037423 389 GPDGAIRVSVM--NEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 389 ~~~~~i~vSA~--~g~GI~eL~~~i~~~l~~~ 418 (435)
....++++|++ ++.|+++++..+...+...
T Consensus 156 ~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 156 ANPALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred cccceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 12238999999 9999999999999988544
No 228
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.46 E-value=2.9e-12 Score=119.56 Aligned_cols=118 Identities=24% Similarity=0.287 Sum_probs=73.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe----CCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL----GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~----~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+.|+++|++|+|||+|+++|....+.. .++.++. ....+.. .+..+.+|||||+.+. .......+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~-t~~s~~~--~~~~~~~~~~~~~~~~~l~D~pG~~~~--------~~~~~~~~ 69 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS-TVTSIEP--NVATFILNSEGKGKKFRLVDVPGHPKL--------RDKLLETL 69 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC-ccCcEee--cceEEEeecCCCCceEEEEECCCCHHH--------HHHHHHHH
Confidence 468999999999999999998765422 1222222 2222222 3577999999998542 22233334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHH----HhcCCCcEEEEEeccCCCCCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIK----ERFSDHIWLDVVSKCDLLQTSP 367 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~----~~~~~~piIvV~NK~Dl~~~~~ 367 (435)
.+..++++||+|++... .+..+...++..+. ....+.|+++|+||+|+.....
T Consensus 70 ~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 70 KNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred hccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 44338899999998431 22333322332221 1124799999999999986543
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.46 E-value=8.9e-13 Score=135.18 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=93.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC-------CC---------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG-------KP---------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~-------~~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+...++++|+.++|||||+++|++. .. ......++|.+.....+..++..+.+|||||+.+..
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~- 89 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV- 89 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH-
Confidence 4567999999999999999999732 00 112236788888777776677789999999985421
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEE-EEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWL-DVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piI-vV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
......+. ..|++++|+|++ .|...++.. .+..+... +.|.+ +|+||+|+.+.... .+....+
T Consensus 90 -------~~~~~~~~-~~D~~ilVvda~--~g~~~qt~e-~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~---~~~~~~~ 153 (394)
T TIGR00485 90 -------KNMITGAA-QMDGAILVVSAT--DGPMPQTRE-HILLARQV--GVPYIVVFLNKCDMVDDEEL---LELVEME 153 (394)
T ss_pred -------HHHHHHHh-hCCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCEEEEEEEecccCCHHHH---HHHHHHH
Confidence 11222232 358899999998 455556554 44445544 66754 68999999753311 1111111
Q ss_pred HHHHHhhhhc--CCCcEEEcccCCCC
Q 037423 379 HLEMASYRKM--GPDGAIRVSVMNEE 402 (435)
Q Consensus 379 ~~~~~~~~~~--~~~~~i~vSA~~g~ 402 (435)
...+...... ...+++++||++|.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 1111111111 12689999999885
No 230
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.46 E-value=8.4e-13 Score=143.13 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=95.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-cc----------ccC----------------------CceeeeeeEEEEEeC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EV----------CNY----------------------PFTTRGILMGHINLG 282 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v----------~~~----------------------~~tT~~~~~~~~~~~ 282 (435)
...+|+++|++++|||||+++|+...- .. +.. .+.|.+.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 446799999999999999999885321 11 011 244566666677778
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+.++.++||||+.+. .......+. .+|++++|+|++ .|...++... +..+... ..+++|+|+||+|+
T Consensus 103 ~~~~~liDtPG~~~f--------~~~~~~~~~-~aD~~llVvda~--~g~~~~t~e~-~~~~~~~-~~~~iivvvNK~D~ 169 (632)
T PRK05506 103 KRKFIVADTPGHEQY--------TRNMVTGAS-TADLAIILVDAR--KGVLTQTRRH-SFIASLL-GIRHVVLAVNKMDL 169 (632)
T ss_pred CceEEEEECCChHHH--------HHHHHHHHH-hCCEEEEEEECC--CCccccCHHH-HHHHHHh-CCCeEEEEEEeccc
Confidence 889999999997421 111222333 358999999987 4555554432 2223333 23678999999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~e 406 (435)
.+.... ..++.......+..-......+++++||++|.|+++
T Consensus 170 ~~~~~~--~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 170 VDYDQE--VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccchhH--HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 753211 011111111111111112235799999999999984
No 231
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.45 E-value=4.5e-12 Score=121.81 Aligned_cols=132 Identities=19% Similarity=0.204 Sum_probs=92.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh--hhHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED--RNNLEKLTLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~ie~~~~~ 311 (435)
....+|+++|.+|+|||||+|++++... .++...++|..........++..+.+|||||+.+..... ...+......
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~ 108 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKR 108 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHH
Confidence 4678999999999999999999998764 566777788887777777788899999999998763211 1111111222
Q ss_pred HHh-cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCCCCCCCc
Q 037423 312 VLT-HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD---HIWLDVVSKCDLLQTSPV 368 (435)
Q Consensus 312 ~l~-~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~---~piIvV~NK~Dl~~~~~~ 368 (435)
++. ...++++||..++.. ..+..+.. +++.+.+.|.. .++++|+||+|...++..
T Consensus 109 ~l~~~~idvIL~V~rlD~~-r~~~~d~~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 109 YLKKKTPDVVLYVDRLDMY-RRDYLDLP-LLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHhccCCCEEEEEEcCCCC-CCCHHHHH-HHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 333 235788888766532 34455443 67777776532 579999999999876543
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.45 E-value=1.6e-12 Score=135.70 Aligned_cols=151 Identities=14% Similarity=0.025 Sum_probs=97.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC----------------CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK----------------PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~----------------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
.+...++++|++++|||||+++|+... .......+.|.+.....+..++.++.+|||||+.+..
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 356779999999999999999998421 0112345678877777777788899999999985421
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhH
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
......+. .+|++++|+|+. .|...+... ++..+... ++| +|+|+||+|+.+.+.. .+....
T Consensus 159 --------~~~~~g~~-~aD~ailVVda~--~G~~~qt~e-~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~---~~~i~~ 221 (478)
T PLN03126 159 --------KNMITGAA-QMDGAILVVSGA--DGPMPQTKE-HILLAKQV--GVPNMVVFLNKQDQVDDEEL---LELVEL 221 (478)
T ss_pred --------HHHHHHHh-hCCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCeEEEEEecccccCHHHH---HHHHHH
Confidence 12233333 358999999988 566666655 34445544 677 7889999999753211 111111
Q ss_pred HHHHHHhhh--hcCCCcEEEcccCCCC
Q 037423 378 EHLEMASYR--KMGPDGAIRVSVMNEE 402 (435)
Q Consensus 378 ~~~~~~~~~--~~~~~~~i~vSA~~g~ 402 (435)
+...+.... .....+++++||.+|.
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEccccc
Confidence 111211111 1124689999999884
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.44 E-value=1.4e-12 Score=122.43 Aligned_cols=112 Identities=19% Similarity=0.185 Sum_probs=71.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccc-------------------cCCceeeeeeEEEEEe-----CCceEEEEeCCCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVC-------------------NYPFTTRGILMGHINL-----GYQNFQITDTPGL 294 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~-------------------~~~~tT~~~~~~~~~~-----~~~~~~liDTpG~ 294 (435)
.|+++|+.|+|||||+++|+....... ...+.|.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999985332111 0112233222223322 2367899999999
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 295 LQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 295 ~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
.+.. .....++.. .|++++|+|++ .+.+.+... ++..+... +.|+++|+||+|+..
T Consensus 82 ~~f~--------~~~~~~~~~-aD~~llVvD~~--~~~~~~~~~-~~~~~~~~--~~p~iiviNK~D~~~ 137 (213)
T cd04167 82 VNFM--------DEVAAALRL-SDGVVLVVDVV--EGVTSNTER-LIRHAILE--GLPIVLVINKIDRLI 137 (213)
T ss_pred cchH--------HHHHHHHHh-CCEEEEEEECC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECcccCc
Confidence 7532 123333443 48999999998 345554433 44444433 689999999999873
No 234
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=3.4e-13 Score=113.84 Aligned_cols=158 Identities=19% Similarity=0.130 Sum_probs=108.7
Q ss_pred EecCCCCChhhHHHHhhCCCCccccCCcee--eeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 242 LVGAPNVGKSSLVRVISTGKPEVCNYPFTT--RGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 242 ~~G~~~~GKssl~~~l~~~~~~v~~~~~tT--~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
++|.+++|||.|+-++-...+...+.- .| .+.....++.++ .++++|||+|+.+. ...+..+++. +
T Consensus 2 llgds~~gktcllir~kdgafl~~~fi-stvgid~rnkli~~~~~kvklqiwdtagqerf--------rsvt~ayyrd-a 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFI-STVGIDFRNKLIDMDDKKVKLQIWDTAGQERF--------RSVTHAYYRD-A 71 (192)
T ss_pred ccccCccCceEEEEEeccCceecCcee-eeeeeccccceeccCCcEEEEEEeeccchHHH--------hhhhHhhhcc-c
Confidence 689999999999877654444322221 22 233333344444 56799999998643 2334445544 4
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
|+.++++|+.++ .++++...|+.+|.++. ....+.+++||||+..+..+.. ..-....+..+.|+.++
T Consensus 72 ~allllydiank--asfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~---------ddg~kla~~y~ipfmet 140 (192)
T KOG0083|consen 72 DALLLLYDIANK--ASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKR---------DDGEKLAEAYGIPFMET 140 (192)
T ss_pred ceeeeeeecccc--hhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcccc---------chHHHHHHHHCCCceec
Confidence 899999999954 67888888999999874 2356789999999976542211 11222333446799999
Q ss_pred ccCCCCCHHHHHHHHHHHHhcccc
Q 037423 397 SVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
||++|.|++-.|..|.+.+.....
T Consensus 141 saktg~nvd~af~~ia~~l~k~~~ 164 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEELKKLKM 164 (192)
T ss_pred cccccccHhHHHHHHHHHHHHhcc
Confidence 999999999999999987766543
No 235
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3.7e-12 Score=108.58 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=107.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCce-eeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFT-TRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~t-T~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
-++-.++|.-|||||.|+..+...++. .+.|.| -.++....+++.+ .++++|||+|..+ +...+..++
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfm-adcphtigvefgtriievsgqkiklqiwdtagqer--------fravtrsyy 81 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER--------FRAVTRSYY 81 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHh-hcCCcccceecceeEEEecCcEEEEEEeecccHHH--------HHHHHHHHh
Confidence 367789999999999999999876652 333322 1223333344444 5679999999853 223344444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+. +...+.|+|++.+ .+...+..|+...+.+- ++..+++++||.||.....+.. ++...|.+..+.-
T Consensus 82 rg-aagalmvyditrr--stynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~y---------eeak~faeengl~ 149 (215)
T KOG0097|consen 82 RG-AAGALMVYDITRR--STYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTY---------EEAKEFAEENGLM 149 (215)
T ss_pred cc-ccceeEEEEehhh--hhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcH---------HHHHHHHhhcCeE
Confidence 44 4568899999954 55667777888777653 5566889999999976653321 3344556666677
Q ss_pred EEEcccCCCCCHHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
++++||++|+++++.|-...+.
T Consensus 150 fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 150 FLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred EEEecccccCcHHHHHHHHHHH
Confidence 9999999999999877555443
No 236
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.43 E-value=2.8e-12 Score=120.51 Aligned_cols=180 Identities=18% Similarity=0.187 Sum_probs=115.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCcccc--CCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHH--HHh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCN--YPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA--VLT 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~--~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~--~l~ 314 (435)
+|+++|.+|+||||++|.+++.....+. ....|.........+++..+.+|||||+.+.........+..... ...
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 5899999999999999999987653222 234566777777788999999999999977654433323333221 123
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCCCCCCCccccchhhhH--HHHHHHhhhhcC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD---HIWLDVVSKCDLLQTSPVAYVTEDEDS--EHLEMASYRKMG 389 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~---~piIvV~NK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 389 (435)
...++++||++++ .++..+.. .++.+...|+. +.+++|+|.+|...... .++... ....+..+....
T Consensus 82 ~g~ha~llVi~~~---r~t~~~~~-~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~----~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 82 PGPHAFLLVIPLG---RFTEEDRE-VLELLQEIFGEEIWKHTIVVFTHADELEDDS----LEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp T-ESEEEEEEETT---B-SHHHHH-HHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT----HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEecC---cchHHHHH-HHHHHHHHccHHHHhHhhHHhhhcccccccc----HHHHHhccCchhHhHHhhhc
Confidence 3468999999987 36666665 66777777643 56899999999877653 222222 112244444444
Q ss_pred CCcEEEcccC------CCCCHHHHHHHHHHHHhcccccccCCC
Q 037423 390 PDGAIRVSVM------NEEGLNELKDRVYQMLVGQMDRIKSRS 426 (435)
Q Consensus 390 ~~~~i~vSA~------~g~GI~eL~~~i~~~l~~~~~~~~t~~ 426 (435)
+..++.++.+ ....+.+|++.|.+++.+......+.+
T Consensus 154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~ 196 (212)
T PF04548_consen 154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNE 196 (212)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-H
T ss_pred CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 5578877776 345789999999999988876555543
No 237
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=99.41 E-value=8.2e-13 Score=95.95 Aligned_cols=58 Identities=38% Similarity=0.627 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 304 NLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 304 ~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
.+|++++.+++|++++|+|++|+|+.||++.++|..++++++..|.++|+++|+||+|
T Consensus 1 ~IE~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 1 EIEMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred ChhHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3789999999999999999999999999999999999999999999999999999998
No 238
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=4.8e-12 Score=129.08 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=116.6
Q ss_pred CCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 234 DLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 234 ~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.++.|.|-++|+-.-|||||+..|.+..+.....-|.|..+....+.. .|.+++|.||||+.-.. .+..-
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~---------aMRaR 220 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS---------AMRAR 220 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHH---------HHHhc
Confidence 467899999999999999999999887776666677887766555554 57899999999985321 11122
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
-....|.+++|+.+. +|.-.|... -++..+.. +.|+|+.+||||....+. .+...++...-.....+ .+..+
T Consensus 221 GA~vtDIvVLVVAad--DGVmpQT~E-aIkhAk~A--~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~--GGdVQ 292 (683)
T KOG1145|consen 221 GANVTDIVVLVVAAD--DGVMPQTLE-AIKHAKSA--NVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDL--GGDVQ 292 (683)
T ss_pred cCccccEEEEEEEcc--CCccHhHHH-HHHHHHhc--CCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHc--CCcee
Confidence 234468899999887 778777776 45666664 899999999999765441 11111111111111111 23468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHh
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++++||++|+|++.|.+++.-...
T Consensus 293 vipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 293 VIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred EEEeecccCCChHHHHHHHHHHHH
Confidence 999999999999999998876543
No 239
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.40 E-value=4.7e-12 Score=138.54 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=84.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC------ccc------------cCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP------EVC------------NYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~------~v~------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
-+.|+++|++|+|||||+++|+.... .+. ...++|.+.....+.+++..+.+|||||+.+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 46899999999999999999963210 111 135788888888899999999999999997642
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
. ....++... |++++|+|++ .|...++.. ++..+... +.|+++|+||+|+...
T Consensus 90 ~--------~~~~~l~~~-D~~ilVvda~--~g~~~~~~~-~~~~~~~~--~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 90 V--------EVERSLRVL-DGAVAVLDAV--GGVQPQSET-VWRQANRY--EVPRIAFVNKMDKTGA 142 (689)
T ss_pred H--------HHHHHHHHh-CEEEEEEeCC--CCCChhHHH-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 1 133344443 8999999988 466666554 44555554 7899999999998754
No 240
>PRK12739 elongation factor G; Reviewed
Probab=99.40 E-value=6.9e-12 Score=137.25 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-----C-ccc------------cCCceeeeeeEEEEEeCCceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-----P-EVC------------NYPFTTRGILMGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-----~-~v~------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 297 (435)
+-+.|+++|++++|||||+++|+... . .+. ...++|.+.....+.+++..+.++||||+.+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 34679999999999999999996321 0 111 25678888888889999999999999998542
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
. ..+..++... |++++|+|++ .|...++.. ++..+... ++|+|+++||+|+...
T Consensus 87 ~--------~e~~~al~~~-D~~ilVvDa~--~g~~~qt~~-i~~~~~~~--~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 T--------IEVERSLRVL-DGAVAVFDAV--SGVEPQSET-VWRQADKY--GVPRIVFVNKMDRIGA 140 (691)
T ss_pred H--------HHHHHHHHHh-CeEEEEEeCC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 1 1234444444 8999999988 567666665 55556554 7899999999999854
No 241
>PRK00007 elongation factor G; Reviewed
Probab=99.40 E-value=8.3e-12 Score=136.56 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=86.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhC---CCC---ccc------------cCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST---GKP---EVC------------NYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~---~~~---~v~------------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
-+.|+++|++|+|||||+++|+. ... .+. ...++|.+.....+.+.+..+.++||||+.+..
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 46899999999999999999962 110 111 356788888888899999999999999985421
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.....++... |++++|+|+. .|...++.. ++..+... ++|.|+++||+|+...
T Consensus 90 --------~ev~~al~~~-D~~vlVvda~--~g~~~qt~~-~~~~~~~~--~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 90 --------IEVERSLRVL-DGAVAVFDAV--GGVEPQSET-VWRQADKY--KVPRIAFVNKMDRTGA 142 (693)
T ss_pred --------HHHHHHHHHc-CEEEEEEECC--CCcchhhHH-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 1133444444 8999999988 677777766 55556664 7899999999998753
No 242
>PTZ00099 rab6; Provisional
Probab=99.40 E-value=9.2e-12 Score=113.59 Aligned_cols=121 Identities=19% Similarity=0.083 Sum_probs=82.8
Q ss_pred EEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEE
Q 037423 278 HINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWL 354 (435)
Q Consensus 278 ~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piI 354 (435)
.+.+++ ..+.||||||..... .+...++. .+|++++|+|++. ..++++...|+..+.... .+.|++
T Consensus 21 ~~~~~~~~v~l~iwDt~G~e~~~--------~~~~~~~~-~ad~~ilv~D~t~--~~sf~~~~~w~~~i~~~~~~~~pii 89 (176)
T PTZ00099 21 TLYLDEGPVRLQLWDTAGQERFR--------SLIPSYIR-DSAAAIVVYDITN--RQSFENTTKWIQDILNERGKDVIIA 89 (176)
T ss_pred EEEECCEEEEEEEEECCChHHhh--------hccHHHhC-CCcEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 344443 678899999985432 22333444 4599999999994 456677777888876543 467899
Q ss_pred EEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 355 DVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 355 vV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+|+||+|+....... ......+.......++++||++|.||+++|++|.+.+.+.
T Consensus 90 lVgNK~DL~~~~~v~---------~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 90 LVGNKTDLGDLRKVT---------YEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred EEEECcccccccCCC---------HHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999999997533211 0111222222345689999999999999999999988653
No 243
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=1.1e-11 Score=124.33 Aligned_cols=87 Identities=29% Similarity=0.393 Sum_probs=69.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-----------------eEEEEeCCCCCCCCch
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-----------------NFQITDTPGLLQRRDE 300 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~ 300 (435)
.+++++|.||+|||||+|++++....++++|+||+++..+.+.+.+. .+.++||||+......
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999899999999999999888877653 4899999999875443
Q ss_pred hhhHHHHHHHHHHhc--CCcEEEEEEeCCC
Q 037423 301 DRNNLEKLTLAVLTH--LPTAILFVHDLSG 328 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~--~~d~il~ViD~s~ 328 (435)
. +.+...++.+ .+|++++|+|+..
T Consensus 83 g----~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 83 G----EGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred H----HHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 2 2233334433 2599999999863
No 244
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.38 E-value=6.2e-12 Score=118.85 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=72.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccc----------------cCCceeeeeeEEEEEeC----------CceEEEEeC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVC----------------NYPFTTRGILMGHINLG----------YQNFQITDT 291 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~----------------~~~~tT~~~~~~~~~~~----------~~~~~liDT 291 (435)
+.|+++|+.++|||||+.+|+...-.+. ...+.|.......+.+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3689999999999999999874321100 11123333222222332 567899999
Q ss_pred CCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 292 PGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 292 pG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
||+.+.. .....++.. +|++++|+|++ .|...+... ++..+... +.|+++|+||+|+.
T Consensus 81 PG~~~f~--------~~~~~~l~~-aD~~ilVvD~~--~g~~~~t~~-~l~~~~~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDFS--------SEVTAALRL-CDGALVVVDAV--EGVCVQTET-VLRQALKE--RVKPVLVINKIDRL 138 (222)
T ss_pred CCccccH--------HHHHHHHHh-cCeeEEEEECC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECCCcc
Confidence 9997642 223444444 48899999998 566666654 44444443 68999999999986
No 245
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.38 E-value=1.2e-12 Score=110.68 Aligned_cols=112 Identities=24% Similarity=0.233 Sum_probs=71.0
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCc----cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPE----VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~----v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
+|+++|.+|+|||||+++|++.... .....+.+..............+.+||++|........ ...+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH--------QFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS--------HHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc--------cchhh
Confidence 5899999999999999999976654 12222333332233333334458899999985432211 11133
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHH---HHHHHHHHHhcCCCcEEEEEeccC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQ---FTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~---~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
. +|++++|+|+++ ..+.+.. ..|+..+.....+.|+++|+||.|
T Consensus 73 ~-~d~~ilv~D~s~--~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 K-ADAVILVYDLSD--PESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp H-SCEEEEEEECCG--HHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred c-CcEEEEEEcCCC--hHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 3 489999999984 3445554 345666666556799999999998
No 246
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.38 E-value=7.1e-12 Score=130.23 Aligned_cols=157 Identities=13% Similarity=-0.005 Sum_probs=95.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-------------------------------ccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-------------------------------EVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
+...++++|+.++|||||+.+|+...- ......+.|.+.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 445799999999999999998863100 0112346788888888888889
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCC-------CHHHHHHHHHHHHHhcCCCc-EEEE
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGT-------SPSDQFTIYKEIKERFSDHI-WLDV 356 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~-------s~~~~~~l~~~l~~~~~~~p-iIvV 356 (435)
.+.|+||||+.+.. ......+ ..+|++++|+|++. |. ..+... .+..+... +.| +|+|
T Consensus 86 ~i~lIDtPGh~~f~--------~~~~~g~-~~aD~ailVVda~~--G~~e~~~~~~~qT~e-h~~~~~~~--gi~~iiv~ 151 (446)
T PTZ00141 86 YFTIIDAPGHRDFI--------KNMITGT-SQADVAILVVASTA--GEFEAGISKDGQTRE-HALLAFTL--GVKQMIVC 151 (446)
T ss_pred EEEEEECCChHHHH--------HHHHHhh-hhcCEEEEEEEcCC--CceecccCCCccHHH-HHHHHHHc--CCCeEEEE
Confidence 99999999975421 1122233 34589999999983 42 123333 23334443 555 7899
Q ss_pred EeccCCCCCCCccccchhhhHHHHHHHhhhh--cCCCcEEEcccCCCCCHHH
Q 037423 357 VSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--MGPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~vSA~~g~GI~e 406 (435)
+||+|....+-....+++...+......... ....+++++||.+|+|+.+
T Consensus 152 vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 152 INKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9999954211001112222222222111111 1236899999999999964
No 247
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.37 E-value=3.6e-12 Score=109.50 Aligned_cols=163 Identities=20% Similarity=0.166 Sum_probs=110.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
.-.+.++|-.++|||||+|.++.+.. ..+-..|+++....++.+...+.+||.||+.... . ....+...
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~--~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr----s-----mWerycR~ 88 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY--LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR----S-----MWERYCRG 88 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc--hhhhcccccceeEEeccCceEEEEEecCCCccHH----H-----HHHHHhhc
Confidence 34589999999999999999886554 2344568888888888888999999999997532 2 22223333
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHH-hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKE-RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~-~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.++++||+|++++...+...-. +...+.+ ...++|+++.+||.|+...-.... ..+...+.... ...+-++.
T Consensus 89 v~aivY~VDaad~~k~~~sr~E-L~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~-----li~rmgL~sit-dREvcC~s 161 (186)
T KOG0075|consen 89 VSAIVYVVDAADPDKLEASRSE-LHDLLDKPSLTGIPLLVLGNKIDLPGALSKIA-----LIERMGLSSIT-DREVCCFS 161 (186)
T ss_pred CcEEEEEeecCCcccchhhHHH-HHHHhcchhhcCCcEEEecccccCcccccHHH-----HHHHhCccccc-cceEEEEE
Confidence 4899999999976544333222 3333322 235799999999999986542110 01111111121 12246899
Q ss_pred cccCCCCCHHHHHHHHHHHHhc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+||+...||+.+.+|+.+.-..
T Consensus 162 iScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 162 ISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred EEEcCCccHHHHHHHHHHHhhh
Confidence 9999999999999999987654
No 248
>PLN00023 GTP-binding protein; Provisional
Probab=99.37 E-value=6.2e-12 Score=123.85 Aligned_cols=119 Identities=21% Similarity=0.230 Sum_probs=83.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---------------CceEEEEeCCCCCCCCch
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---------------YQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---------------~~~~~liDTpG~~~~~~~ 300 (435)
...+|+++|..|||||||++++.+..+.....+....+.....+.++ ...+.||||+|.....
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr-- 97 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK-- 97 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh--
Confidence 45789999999999999999999876643322222223333344442 2458999999985432
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-------------CCCcEEEEEeccCCCCC
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-------------SDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-------------~~~piIvV~NK~Dl~~~ 365 (435)
.+...++.. ++++|+|+|++++ .++++...|+..+.... .+.|+++|+||+||...
T Consensus 98 ------sL~~~yyr~-AdgiILVyDITdr--~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 98 ------DCRSLFYSQ-INGVIFVHDLSQR--RTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred ------hhhHHhccC-CCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 222333443 5899999999954 57778888999988752 14789999999999654
No 249
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.37 E-value=1.7e-12 Score=118.88 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=115.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-C--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-Y--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++++||..++|||+|+-.+....+... |..|--|.....+..+ + ..+.+|||+|+.+... ++ .-.+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~-yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDr-----lR---plsY 74 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEE-YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDR-----LR---PLSY 74 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCccc-ccCeEEccceEEEEecCCCEEEEeeeecCCCccccc-----cc---ccCC
Confidence 46799999999999999999887766433 3344446666666664 5 4568999999976531 11 1122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch----hhhHHHHHHHhhh-h
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTE----DEDSEHLEMASYR-K 387 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~----~~~~~~~~~~~~~-~ 387 (435)
.. .|+++++++++. ..++++. ..|+.++....++.|+|+|++|.||.+......... +... .......+ .
T Consensus 75 ~~-tdvfl~cfsv~~--p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt-~~~g~~lA~~ 150 (198)
T KOG0393|consen 75 PQ-TDVFLLCFSVVS--PESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVT-YEQGLELAKE 150 (198)
T ss_pred CC-CCEEEEEEEcCC--hhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCccc-HHHHHHHHHH
Confidence 23 488999999984 4666664 469999999999999999999999984321100000 0000 11111222 2
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.+...++++||++..|+.++|+..........
T Consensus 151 iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 151 IGAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 33467999999999999999999998775543
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.37 E-value=2.2e-11 Score=128.71 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC--CC-C---cc----------cc------CCceeeeeeEEEEEeCCceEEEEeCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST--GK-P---EV----------CN------YPFTTRGILMGHINLGYQNFQITDTPG 293 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~--~~-~---~v----------~~------~~~tT~~~~~~~~~~~~~~~~liDTpG 293 (435)
+-+.++++|++|+|||||+++|+. .. . .+ ++ ..+.|.......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456899999999999999999862 11 0 01 11 112334444556778889999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 294 LLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 294 ~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
+.+... .+..++.. .|++++|+|++ .+...+... ++...... +.|+++++||+|+...
T Consensus 89 ~~df~~--------~~~~~l~~-aD~aIlVvDa~--~gv~~~t~~-l~~~~~~~--~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 89 HEDFSE--------DTYRTLTA-VDSALMVIDAA--KGVEPQTRK-LMEVCRLR--DTPIFTFINKLDRDGR 146 (526)
T ss_pred chhhHH--------HHHHHHHH-CCEEEEEEecC--CCCCHHHHH-HHHHHHhc--CCCEEEEEECCccccc
Confidence 865321 12333433 48999999998 455554443 55554443 7999999999998653
No 251
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.37 E-value=6.4e-12 Score=121.10 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=116.6
Q ss_pred CCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 234 DLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 234 ~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
....+.|+++|++|+|||||++.|++......+.-|.|.|+....... .|..+.+.||-|+...-+..--..+..++..
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 356789999999999999999999977777777888898887666555 3567889999999876554332233334455
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CC----CcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SD----HIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK 387 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~----~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
..+. |+++.|.|+|.+ .-.+.....+.-+.+.. +. ..||-|-||+|..+..... +
T Consensus 255 Vaea-dlllHvvDiShP--~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-----------------E 314 (410)
T KOG0410|consen 255 VAEA-DLLLHVVDISHP--NAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-----------------E 314 (410)
T ss_pred Hhhc-ceEEEEeecCCc--cHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-----------------c
Confidence 5554 899999999954 33344445566666652 11 1267799999976543111 0
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
....+.+||++|.|++++++.+........
T Consensus 315 --~n~~v~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 315 --KNLDVGISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred --cCCccccccccCccHHHHHHHHHHHhhhhh
Confidence 012688999999999999999998776543
No 252
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=6.9e-12 Score=126.11 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=114.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCC---------------CccccCCceeeeeeEEEEEeC---C--ceEEEEeCCCCCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGK---------------PEVCNYPFTTRGILMGHINLG---Y--QNFQITDTPGLLQR 297 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~---------------~~v~~~~~tT~~~~~~~~~~~---~--~~~~liDTpG~~~~ 297 (435)
+..+++.+-..|||||..+++... .......|.|.-.....+.|. | ..+.+|||||+.+.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 457888899999999999987421 123345677766666565553 2 45789999999987
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhH
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
.-+.. +++.. +.+.++|+|++ .|...|...+.+..+.. +.-+|-|+||+||...+. .+
T Consensus 90 sYEVS--------RSLAA-CEGalLvVDAs--QGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adp--------er 147 (603)
T COG0481 90 SYEVS--------RSLAA-CEGALLVVDAS--QGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADP--------ER 147 (603)
T ss_pred EEEeh--------hhHhh-CCCcEEEEECc--cchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCH--------HH
Confidence 64431 22222 24578889999 78888888877766654 678999999999987652 12
Q ss_pred HHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 378 EHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 378 ~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
...++...........+.+|||+|.||++++++|.+.++.-.
T Consensus 148 vk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 148 VKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 234455555555567899999999999999999999886543
No 253
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.36 E-value=3.4e-11 Score=107.77 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=111.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-c------cccCCc---eeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-E------VCNYPF---TTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNN 304 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~------v~~~~~---tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ 304 (435)
...+|+++|+.++||||++..++.... . .....+ ||...-.++..+++ ..+.++||||+.+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------- 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------- 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence 467899999999999999999986542 1 112223 78878788888766 78999999999753
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh
Q 037423 305 LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS 384 (435)
Q Consensus 305 ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
++....+...+...++++|.+ .+.+. ....++..+.... ..|+++++||.||.+...... ......
T Consensus 82 --~fm~~~l~~ga~gaivlVDss--~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~--------i~e~l~ 147 (187)
T COG2229 82 --KFMWEILSRGAVGAIVLVDSS--RPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEK--------IREALK 147 (187)
T ss_pred --HHHHHHHhCCcceEEEEEecC--CCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHH--------HHHHHH
Confidence 344555555567889999988 44555 3334666666653 289999999999988753321 111111
Q ss_pred hhhcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 385 YRKMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 385 ~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
... ...|+|+++|..++|..+.++.+...
T Consensus 148 ~~~-~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 148 LEL-LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred hcc-CCCceeeeecccchhHHHHHHHHHhh
Confidence 111 24689999999999999988887765
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.36 E-value=7.6e-12 Score=121.70 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=76.5
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCc------c------cc------CCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPE------V------CN------YPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~------v------~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
.|+++|++|+|||||+++++..... + .+ ..+.|.......+.+++.++.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 3799999999999999998742110 1 01 1133444556677788889999999998532
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
......++.. +|++++|+|++ .+...+... ++..+... +.|+++|+||+|+...
T Consensus 78 -----~~~~~~~l~~-aD~~i~Vvd~~--~g~~~~~~~-~~~~~~~~--~~p~iivvNK~D~~~~ 131 (268)
T cd04170 78 -----VGETRAALRA-ADAALVVVSAQ--SGVEVGTEK-LWEFADEA--GIPRIIFINKMDRERA 131 (268)
T ss_pred -----HHHHHHHHHH-CCEEEEEEeCC--CCCCHHHHH-HHHHHHHc--CCCEEEEEECCccCCC
Confidence 1223344443 48899999998 445554443 34445543 7899999999998754
No 255
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=1.4e-11 Score=119.75 Aligned_cols=85 Identities=31% Similarity=0.444 Sum_probs=67.5
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-----------------eEEEEeCCCCCCCCchhh
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-----------------NFQITDTPGLLQRRDEDR 302 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~~~ 302 (435)
++++|.||+|||||+|++++.+..++++||||.+...+.+.+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~- 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG- 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh-
Confidence 579999999999999999999999999999999999988887664 38999999998654432
Q ss_pred hHHHHHHHHHHhc--CCcEEEEEEeCCC
Q 037423 303 NNLEKLTLAVLTH--LPTAILFVHDLSG 328 (435)
Q Consensus 303 ~~ie~~~~~~l~~--~~d~il~ViD~s~ 328 (435)
+.+...++.+ .+|++++|+|+.+
T Consensus 80 ---~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 80 ---EGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred ---hHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2233333333 2599999999853
No 256
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.34 E-value=1.8e-11 Score=127.10 Aligned_cols=166 Identities=15% Similarity=0.109 Sum_probs=97.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEEE---------------EeC---------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGHI---------------NLG--------------- 282 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~~---------------~~~--------------- 282 (435)
....|+++|+-..|||||+.+|++... ......+.|.+...... .+.
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 456799999999999999999996422 11112233322221111 000
Q ss_pred ---CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 283 ---YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 283 ---~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
...+.++||||+.+. -+-+...+. ..|++++|+|+++. +...+....+ . +.....-.++|+|+||
T Consensus 113 ~~~~~~i~~IDtPGH~~f--------i~~m~~g~~-~~D~alLVVda~~g-~~~~qT~ehl-~-i~~~lgi~~iIVvlNK 180 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDIL--------MATMLNGAA-VMDAALLLIAANES-CPQPQTSEHL-A-AVEIMKLKHIIILQNK 180 (460)
T ss_pred ccccceEeeeeCCCHHHH--------HHHHHHHHh-hCCEEEEEEECCCC-ccchhhHHHH-H-HHHHcCCCcEEEEEec
Confidence 236899999997421 122233333 34899999999842 1233333322 2 2222223579999999
Q ss_pred cCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 360 CDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+|+.+.... .+...+...+..-......+++++||++|.|+++|++.|.+.+..
T Consensus 181 iDlv~~~~~----~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 181 IDLVKEAQA----QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccccCHHHH----HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 999854311 111111111111011234689999999999999999999976654
No 257
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.34 E-value=2.2e-11 Score=118.93 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=88.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCcccc---------CCcee-eeeeEEEEEeCC--ceEEEEeCCCCCCCCchh--h
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCN---------YPFTT-RGILMGHINLGY--QNFQITDTPGLLQRRDED--R 302 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~---------~~~tT-~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~--~ 302 (435)
.++|+++|.+|+|||||+|++++....... ...|+ .......+..++ .++.+|||||+.+..... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 357999999999999999999987653221 22222 333333444455 468999999997654211 0
Q ss_pred h----HHHHHHHHHH-------h------cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 303 N----NLEKLTLAVL-------T------HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 303 ~----~ie~~~~~~l-------~------~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
. .++.+-..++ + ...|+++|+++++. .+....+.. +++.+.+ +.|+++|+||+|+...
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~-~lk~l~~---~v~vi~VinK~D~l~~ 158 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIE-FMKRLSK---RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHH-HHHHHhc---cCCEEEEEECCCcCCH
Confidence 1 1111111111 1 11378999999875 355566654 6666664 6899999999999764
Q ss_pred CCccccchhhhHHHHHHHhhhhcCCCcEEEccc
Q 037423 366 SPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSV 398 (435)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA 398 (435)
.+ .......+.+.....+.+++..+.
T Consensus 159 ~e-------~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 159 EE-------LKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred HH-------HHHHHHHHHHHHHHcCCceECCCC
Confidence 31 112222333333344456666554
No 258
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=3.6e-11 Score=131.71 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=80.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC------cc------cc------CCceeeeeeEEEEEeCCceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP------EV------CN------YPFTTRGILMGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~------~v------~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 297 (435)
.-++|+++|+.|+|||||+++|+.... .+ .+ ..+.|.......+.+++..+.+|||||+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 346899999999999999999974211 00 00 1234555555677788899999999998643
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
. .....++... |++++|+|++ .+...+... ++..+... +.|+++|+||+|+...
T Consensus 87 ~--------~~~~~~l~~a-D~~ilVvd~~--~~~~~~~~~-~~~~~~~~--~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 T--------GEVERSLRVL-DGAVVVFDAV--TGVQPQTET-VWRQADRY--GIPRLIFINKMDRVGA 140 (687)
T ss_pred H--------HHHHHHHHhC-CEEEEEEeCC--CCCCHHHHH-HHHHHHhc--CCCEEEEEECCCCCCC
Confidence 2 2233444444 8899999998 455555554 44455554 7899999999998864
No 259
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.5e-11 Score=129.43 Aligned_cols=152 Identities=26% Similarity=0.320 Sum_probs=113.8
Q ss_pred HHHhhhhhhcccccchhHHHHHHHH-HHHHHHHHHHhchhHHHhhhcCCCcccchHHHHHhhhhcCCCCcHHHHHHHHHH
Q 037423 92 ALKKAKRVSATKGISNIAKRERNKA-AKQLDALMKELAVPLRDYVANFPNRKCLHPYERSLTELTLGDGNYEKVLKNVDA 170 (435)
Q Consensus 92 ~~~r~~~~~~~~~~~~~~~~~r~~~-~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~~l~e~~~~~~~y~~~L~~l~~ 170 (435)
-+.+.|+++..++.+++.+.||+|| .+||++++++|+. +..+.+++..|.+.+.+..++++..+.++.++++
T Consensus 206 ~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~-------~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~k 278 (782)
T COG0466 206 DLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGE-------DDDDKDEVEELREKIEKLKLPKEAKEKAEKELKK 278 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 3455778888899999999999999 8999999999997 3333478999999999999999999999999998
Q ss_pred HhhhH-----HHHhhHHHH----Hhhcccc-----HHHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCccCCC
Q 037423 171 LRKKV-----VSAGKEHAS----LCAKSLS-----KREAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLE 236 (435)
Q Consensus 171 ~~~~i-----~~i~k~~~~----l~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~ 236 (435)
++.+. ..+.++|.+ ++|...+ ..++++.+...++.+..+..+ +.+++...... -...
T Consensus 279 L~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeR-------IlEyLAV~~l~--~~~k 349 (782)
T COG0466 279 LETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKER-------ILEYLAVQKLT--KKLK 349 (782)
T ss_pred HhcCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHH-------HHHHHHHHHHh--ccCC
Confidence 87643 334455554 4676544 344566666666666666655 33333222211 1246
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++.+|++|+||||||||.++++.
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHH
Confidence 89999999999999999999974
No 260
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.32 E-value=5.9e-11 Score=115.38 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=77.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCC------c----------cccC------CceeeeeeEEEEEeCCceEEEEeCCCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKP------E----------VCNY------PFTTRGILMGHINLGYQNFQITDTPGLL 295 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~------~----------v~~~------~~tT~~~~~~~~~~~~~~~~liDTpG~~ 295 (435)
+.|+++|++|+|||||+++|+...- . +.++ .+.|.......+.+++.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5699999999999999999873211 1 1111 1223334455778889999999999986
Q ss_pred CCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 296 QRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 296 ~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
+.. .....++.. .|++++|+|++ .+...+... ++...... +.|+++++||+|+....
T Consensus 83 df~--------~~~~~~l~~-aD~~IlVvda~--~g~~~~~~~-i~~~~~~~--~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFS--------EDTYRTLTA-VDSAVMVIDAA--KGVEPQTRK-LFEVCRLR--GIPIITFINKLDREGRD 139 (267)
T ss_pred HHH--------HHHHHHHHH-CCEEEEEEECC--CCccHHHHH-HHHHHHhc--CCCEEEEEECCccCCCC
Confidence 432 112333443 48999999998 445444433 45544443 78999999999986553
No 261
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=1.8e-12 Score=114.77 Aligned_cols=163 Identities=18% Similarity=0.129 Sum_probs=112.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEE--eCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHIN--LGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~--~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++++++|..+|||||++.+++.+-+.-......-.++....+. ..+.+..+|||+|..+. ...+. ++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf--------DaItk-Ay 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF--------DAITK-AY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH--------HHHHH-HH
Confidence 457899999999999999999996544221111111222222222 24567789999998643 22333 44
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
...+.+.++|+.-+ +.++++....|...+......+|.++|-||+|+++...... + ............+
T Consensus 90 yrgaqa~vLVFSTT--Dr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~---~------evE~lak~l~~Rl 158 (246)
T KOG4252|consen 90 YRGAQASVLVFSTT--DRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDK---G------EVEGLAKKLHKRL 158 (246)
T ss_pred hccccceEEEEecc--cHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcch---H------HHHHHHHHhhhhh
Confidence 44557888999988 55889999999999998888899999999999997653321 1 1111111112367
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.+|++...|+..+|..+.+.+.+.
T Consensus 159 yRtSvked~NV~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 159 YRTSVKEDFNVMHVFAYLAEKLTQQ 183 (246)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 8999999999999999999876544
No 262
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.30 E-value=8.6e-11 Score=124.31 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=77.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC-CC-----ccc----------c------CCceeeeeeEEEEEeCCceEEEEeCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG-KP-----EVC----------N------YPFTTRGILMGHINLGYQNFQITDTPG 293 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~-~~-----~v~----------~------~~~tT~~~~~~~~~~~~~~~~liDTpG 293 (435)
+-++++++|++++|||||+++|+.. .. .+. + ..+.|.......+.+++..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4578999999999999999998521 10 110 0 112344445566778889999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 294 LLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 294 ~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
+.+.. .....++.. +|++++|+|++ .+...+... ++..... .+.|+++++||+|+..
T Consensus 90 ~~df~--------~~~~~~l~~-aD~aIlVvDa~--~gv~~~t~~-l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFS--------EDTYRTLTA-VDNCLMVIDAA--KGVETRTRK-LMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHH--------HHHHHHHHh-CCEEEEEEECC--CCCCHHHHH-HHHHHHh--cCCCEEEEEECccccC
Confidence 95432 123334443 48999999998 455444433 4444443 3789999999999864
No 263
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.28 E-value=1.8e-11 Score=115.67 Aligned_cols=132 Identities=15% Similarity=0.204 Sum_probs=79.5
Q ss_pred ceEEEEeCCCCCCCCc-hhhhHHHHHHHHHH-hcCCcEEEEEEeCCCC-CCCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Q 037423 284 QNFQITDTPGLLQRRD-EDRNNLEKLTLAVL-THLPTAILFVHDLSGE-CGTSPSDQFTIYKEIKERFSDHIWLDVVSKC 360 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~-~~~~~ie~~~~~~l-~~~~d~il~ViD~s~~-~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~ 360 (435)
..+++|||||+.+-.. .... ......+ ...+.+|+||+|.... ++.++-.-.-....|.-. ...|+|+|+||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsG---sIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk-tklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASG---SIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK-TKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCc---cchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh-ccCCeEEEEecc
Confidence 4579999999865321 0011 1112222 2346789999997633 233333332122222222 478999999999
Q ss_pred CCCCCCCccccchhhhHHHHHHHh-------------------hhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 361 DLLQTSPVAYVTEDEDSEHLEMAS-------------------YRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 361 Dl~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
|+.+.....+++.+.......+.+ |. .....+.|||.+|.|+++++.++.+.+.++..+
T Consensus 192 Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY--~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 192 DVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFY--RSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHH--hhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 999876544444443332222221 11 124689999999999999999999887766543
No 264
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.28 E-value=5.8e-11 Score=123.38 Aligned_cols=156 Identities=14% Similarity=0.028 Sum_probs=94.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-------------------------------ccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-------------------------------EVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
+...++++|+.++|||||+-+|+...- ......+.|.+....++.+++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 456799999999999999988762100 0111235677777777888888
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC---CCC--HHHHHHHHHHHHHhcCCC-cEEEEEe
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC---GTS--PSDQFTIYKEIKERFSDH-IWLDVVS 358 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~---g~s--~~~~~~l~~~l~~~~~~~-piIvV~N 358 (435)
.+.++||||+.+.. ......+ ..+|++++|+|++... ++. .+... .+..+... +. ++|+|+|
T Consensus 86 ~i~liDtPGh~df~--------~~~~~g~-~~aD~aIlVVda~~G~~e~g~~~~~qT~e-h~~~~~~~--gi~~iIV~vN 153 (447)
T PLN00043 86 YCTVIDAPGHRDFI--------KNMITGT-SQADCAVLIIDSTTGGFEAGISKDGQTRE-HALLAFTL--GVKQMICCCN 153 (447)
T ss_pred EEEEEECCCHHHHH--------HHHHhhh-hhccEEEEEEEcccCceecccCCCchHHH-HHHHHHHc--CCCcEEEEEE
Confidence 99999999985421 1223333 3458999999998421 111 22222 22223333 55 5788999
Q ss_pred ccCCCCCCCccccchhhhHHHHHHHhhhhc-----CCCcEEEcccCCCCCHHH
Q 037423 359 KCDLLQTSPVAYVTEDEDSEHLEMASYRKM-----GPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 359 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~vSA~~g~GI~e 406 (435)
|+|+.+..-.. ..+.+....+..+... ...+++++||++|+|+.+
T Consensus 154 KmD~~~~~~~~---~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 154 KMDATTPKYSK---ARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cccCCchhhhH---HHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 99986321000 1111112223332221 135799999999999854
No 265
>PRK13768 GTPase; Provisional
Probab=99.27 E-value=3.9e-11 Score=115.80 Aligned_cols=130 Identities=23% Similarity=0.314 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc-CCcEEEEEEeCCCCCCCCHHHHH--HHHHHHHHhcCCCcEEEEEecc
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH-LPTAILFVHDLSGECGTSPSDQF--TIYKEIKERFSDHIWLDVVSKC 360 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~-~~d~il~ViD~s~~~g~s~~~~~--~l~~~l~~~~~~~piIvV~NK~ 360 (435)
..+.+|||||..+.... +.....+ ...+.. ..+++++|+|++. +.+..+.. .++........++|+++|+||+
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~-~~~l~~~~~~~ii~liD~~~--~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~ 172 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKL-VERLSGSSKSVVVFLIDAVL--AKTPSDFVSLLLLALSVQLRLGLPQIPVLNKA 172 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHH-HHHHHhcCCeEEEEEechHH--hCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhH
Confidence 46899999998653211 1212222 222222 2689999999873 34444432 1222222222479999999999
Q ss_pred CCCCCCCccccchhhhHH------------------HHHHHh-hhhcC-CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 361 DLLQTSPVAYVTEDEDSE------------------HLEMAS-YRKMG-PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 361 Dl~~~~~~~~~~~~~~~~------------------~~~~~~-~~~~~-~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
|+.+......... .... ...+.+ +.... ..+++++||++++|+++|+++|.+.+...
T Consensus 173 D~~~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 173 DLLSEEELERILK-WLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred hhcCchhHHHHHH-HHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 9987653211100 0000 000001 11112 24789999999999999999999988654
No 266
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.27 E-value=1.8e-10 Score=109.81 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=85.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeee---------------------------------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGIL--------------------------------------- 275 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~--------------------------------------- 275 (435)
...|.++++|+.|+||||+++++++..+........|+.+.
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999875321100001111110
Q ss_pred ------------EEEEEe-CCceEEEEeCCCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHH
Q 037423 276 ------------MGHINL-GYQNFQITDTPGLLQRR-----DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQ 337 (435)
Q Consensus 276 ------------~~~~~~-~~~~~~liDTpG~~~~~-----~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~ 337 (435)
...+.. +-..+.++||||+.... ......++.+...++.+..+.+++|+|++ .+...++.
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~--~d~~~~d~ 181 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPAN--VDLANSDA 181 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECC--CCCCchhH
Confidence 001111 11567999999997542 22334567777888887778999999987 55666665
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 338 FTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 338 ~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
..+.+.+... ++|+++|+||+|..+..
T Consensus 182 l~ia~~ld~~--~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 182 LKLAKEVDPQ--GERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHc--CCcEEEEEECCCCCCcc
Confidence 5567777664 78999999999998654
No 267
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.7e-11 Score=106.22 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=110.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC------CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK------PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT 309 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~ 309 (435)
....+++.|.-|+|||||+.+.-... ..++ .-.+|.....+++.+....+.+||.-|... +..+.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~-ki~~tvgLnig~i~v~~~~l~fwdlgGQe~--------lrSlw 86 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPS-KITPTVGLNIGTIEVCNAPLSFWDLGGQES--------LRSLW 86 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHH-HeecccceeecceeeccceeEEEEcCChHH--------HHHHH
Confidence 45679999999999999998764221 1111 124678899999999999999999999842 22333
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHH--HhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIK--ERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK 387 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~--~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
..++ ..+++++|++|+++++.+ ++-...++.+. +...+.|+++.+||.|+.+.... .++..... ..+...
T Consensus 87 ~~yY-~~~H~ii~viDa~~~eR~--~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~----~El~~~~~-~~e~~~ 158 (197)
T KOG0076|consen 87 KKYY-WLAHGIIYVIDATDRERF--EESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA----AELDGVFG-LAELIP 158 (197)
T ss_pred HHHH-HHhceeEEeecCCCHHHH--HHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH----HHHHHHhh-hhhhcC
Confidence 3333 334889999999964332 22222222222 22357999999999998765422 11111111 122233
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
....++.+|||.+|+||++-+.|+...+...
T Consensus 159 ~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 3446899999999999999999999998776
No 268
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=7.5e-11 Score=117.62 Aligned_cols=161 Identities=18% Similarity=0.116 Sum_probs=102.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------------------------------CccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------------------------------PEVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------------------------------~~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
+...++++|+..+|||||+-+|+-.. .......|.|.+.....++.+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 45679999999999999999887210 01223567788888888888888
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC---CCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC---GTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~---g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
.+.++|+||+.+.-. | ++. ....+|+.++|+|++... |+....|..-...+.....-..+|+++||+|
T Consensus 86 ~~tIiDaPGHrdFvk---n-----mIt-GasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD 156 (428)
T COG5256 86 NFTIIDAPGHRDFVK---N-----MIT-GASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMD 156 (428)
T ss_pred eEEEeeCCchHHHHH---H-----hhc-chhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEccc
Confidence 999999999765321 1 111 122358999999998541 2223333222333444434467999999999
Q ss_pred CCCCCCccccchhhhHHHHHHHhhhhcC--CCcEEEcccCCCCCHHHH
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMASYRKMG--PDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~vSA~~g~GI~eL 407 (435)
+++.++. .+++.......+..-.... ..+++++|+.+|.|+.+-
T Consensus 157 ~v~wde~--rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEE--RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHH--HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 9975421 2223332322332222211 367999999999998653
No 269
>PRK12740 elongation factor G; Reviewed
Probab=99.25 E-value=1.5e-10 Score=126.64 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=76.1
Q ss_pred ecCCCCChhhHHHHhhCCCC---c---------c------ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhH
Q 037423 243 VGAPNVGKSSLVRVISTGKP---E---------V------CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNN 304 (435)
Q Consensus 243 ~G~~~~GKssl~~~l~~~~~---~---------v------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 304 (435)
+|++|+|||||+++|+...- . + ....+.|.+.....+.+++..+.+|||||+.+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 69999999999999953211 0 1 1124566677777888899999999999985421
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 305 LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 305 ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.....++.. +|++++|+|++ .+...+... ++..+... +.|+++|+||+|+...
T Consensus 75 --~~~~~~l~~-aD~vllvvd~~--~~~~~~~~~-~~~~~~~~--~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 75 --GEVERALRV-LDGAVVVVCAV--GGVEPQTET-VWRQAEKY--GVPRIIFVNKMDRAGA 127 (668)
T ss_pred --HHHHHHHHH-hCeEEEEEeCC--CCcCHHHHH-HHHHHHHc--CCCEEEEEECCCCCCC
Confidence 123334443 48999999998 455555554 44455543 7899999999998754
No 270
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=4.4e-11 Score=107.12 Aligned_cols=164 Identities=19% Similarity=0.170 Sum_probs=111.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
....+|+++|--|+||||++..+-..+.... -.|.+.....+.+.+.++.+||..|+..... +...+ .
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt---vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~--------lW~~Y-~ 82 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT---VPTIGFNVETVEYKNISFTVWDVGGQEKLRP--------LWKHY-F 82 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC---CCccccceeEEEEcceEEEEEecCCCccccc--------chhhh-c
Confidence 3456899999999999999999866554322 3467788888899999999999999954322 22223 3
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER-FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~-~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
...+++|||+|.+++...... ...+...+... ..+.|+++..||.|+...-...+ ......+..+.. ....+
T Consensus 83 ~~t~~lIfVvDS~Dr~Ri~ea-k~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e-----i~~~L~l~~l~~-~~w~i 155 (181)
T KOG0070|consen 83 QNTQGLIFVVDSSDRERIEEA-KEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE-----ITNKLGLHSLRS-RNWHI 155 (181)
T ss_pred cCCcEEEEEEeCCcHHHHHHH-HHHHHHHHcCcccCCceEEEEechhhccccCCHHH-----HHhHhhhhccCC-CCcEE
Confidence 334889999999865433221 12233333322 14689999999999987643211 112223333333 23467
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
-.++|.+|+|+.|-++++.+.+..
T Consensus 156 q~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 156 QSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred eeccccccccHHHHHHHHHHHHhc
Confidence 899999999999999999998764
No 271
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.22 E-value=1.4e-09 Score=121.85 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=96.4
Q ss_pred CChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC------------------ceEEEEeCCCCCCCCchhhhHHHHHH
Q 037423 248 VGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY------------------QNFQITDTPGLLQRRDEDRNNLEKLT 309 (435)
Q Consensus 248 ~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~------------------~~~~liDTpG~~~~~~~~~~~ie~~~ 309 (435)
++||||+.++.+..+.....-|.|.++....+.++. ..+.||||||+... ..+.
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F--------~~lr 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF--------TSLR 543 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH--------HHHH
Confidence 469999999998777655566777776665555432 12799999997432 1111
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccc--------------cchhh
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAY--------------VTEDE 375 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~--------------~~~~~ 375 (435)
... ...+|++++|+|++ .|+..++.. .+..+... +.|+++|+||+|+........ ...++
T Consensus 544 ~~g-~~~aDivlLVVDa~--~Gi~~qT~e-~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el 617 (1049)
T PRK14845 544 KRG-GSLADLAVLVVDIN--EGFKPQTIE-AINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL 617 (1049)
T ss_pred Hhh-cccCCEEEEEEECc--ccCCHhHHH-HHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence 112 23468999999998 456666554 34455553 789999999999974321000 00000
Q ss_pred hHHHHHH----Hhh----------hh-cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 376 DSEHLEM----ASY----------RK-MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 376 ~~~~~~~----~~~----------~~-~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
......+ .+. .. ....+++++||++|+||++|+..+.....
T Consensus 618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 0000000 000 00 13468999999999999999998876543
No 272
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.21 E-value=1.1e-10 Score=116.33 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=65.9
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+.|+||+|+..... .+...+|.+++|+++. .|...+.. ...+.+ ..-++|+||+|+
T Consensus 148 g~d~viieT~Gv~qs~~------------~i~~~aD~vlvv~~p~--~gd~iq~~---k~gi~E----~aDIiVVNKaDl 206 (332)
T PRK09435 148 GYDVILVETVGVGQSET------------AVAGMVDFFLLLQLPG--AGDELQGI---KKGIME----LADLIVINKADG 206 (332)
T ss_pred CCCEEEEECCCCccchh------------HHHHhCCEEEEEecCC--chHHHHHH---Hhhhhh----hhheEEeehhcc
Confidence 67889999999984321 0223368899987743 23222221 121222 234899999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhh----cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRK----MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
....... ....+......+.. ....|++.+||++|.|+++|++.|.+.+.
T Consensus 207 ~~~~~a~----~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 207 DNKTAAR----RAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred cchhHHH----HHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8654211 11111111111111 12258999999999999999999999876
No 273
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.21 E-value=4.1e-10 Score=106.81 Aligned_cols=142 Identities=11% Similarity=0.158 Sum_probs=85.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.++..|+++|++|+|||||++.+.+... .+....++ . .....++.++.++||||.. ......
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i----~i~~~~~~~i~~vDtPg~~-----------~~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I----TVVTGKKRRLTFIECPNDI-----------NAMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E----EEEecCCceEEEEeCCchH-----------HHHHHH
Confidence 4567899999999999999999886421 22222232 1 1122357889999999853 011222
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcE-EEEEeccCCCCCCCccccchhhhHHHHH-HHhhhhcCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIW-LDVVSKCDLLQTSPVAYVTEDEDSEHLE-MASYRKMGP 390 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~pi-IvV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 390 (435)
. ..+|++++|+|++ .+...++.. ++..+... +.|. ++|+||+|+...... ..+....... +... ....
T Consensus 101 a-k~aDvVllviDa~--~~~~~~~~~-i~~~l~~~--g~p~vi~VvnK~D~~~~~~~---~~~~~~~l~~~~~~~-~~~~ 170 (225)
T cd01882 101 A-KVADLVLLLIDAS--FGFEMETFE-FLNILQVH--GFPRVMGVLTHLDLFKKNKT---LRKTKKRLKHRFWTE-VYQG 170 (225)
T ss_pred H-HhcCEEEEEEecC--cCCCHHHHH-HHHHHHHc--CCCeEEEEEeccccCCcHHH---HHHHHHHHHHHHHHh-hCCC
Confidence 2 3358999999988 456555554 55555554 6775 459999998753311 1111111111 1110 1234
Q ss_pred CcEEEcccCCCC
Q 037423 391 DGAIRVSVMNEE 402 (435)
Q Consensus 391 ~~~i~vSA~~g~ 402 (435)
.+++++||++.-
T Consensus 171 ~ki~~iSa~~~~ 182 (225)
T cd01882 171 AKLFYLSGIVHG 182 (225)
T ss_pred CcEEEEeeccCC
Confidence 689999999873
No 274
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.1e-10 Score=115.73 Aligned_cols=88 Identities=28% Similarity=0.455 Sum_probs=70.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC------------------ceEEEEeCCCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY------------------QNFQITDTPGLLQRR 298 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~------------------~~~~liDTpG~~~~~ 298 (435)
..++++||-||||||||.|+++......++|||+|.++..+.....+ ..+.++|.+|+....
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 35799999999999999999998888899999999999988876532 245899999999887
Q ss_pred chhhhHHHHHHHHHHhcC--CcEEEEEEeCCC
Q 037423 299 DEDRNNLEKLTLAVLTHL--PTAILFVHDLSG 328 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~--~d~il~ViD~s~ 328 (435)
...+. +.-.++.+. .|+++.|+|+++
T Consensus 82 s~GeG----LGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEG----LGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCC----cchHHHHhhhhcCeEEEEEEecC
Confidence 65533 344444443 388999999885
No 275
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2.3e-10 Score=111.71 Aligned_cols=152 Identities=20% Similarity=0.131 Sum_probs=103.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC---------------------------------ccccCCceeeeeeEEEEEeCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP---------------------------------EVCNYPFTTRGILMGHINLGY 283 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~---------------------------------~v~~~~~tT~~~~~~~~~~~~ 283 (435)
.-+.+.||...-||||||-+|+.+.- .-....|.|.|+....+..+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 45689999999999999999874310 011234678888888888888
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh--cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT--HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~--~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
++|++.||||+.. ++.+... ..+|+.++++|+. .|...|... +..|..+..-+.+++.+||+|
T Consensus 86 RkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR--~Gvl~QTrR--Hs~I~sLLGIrhvvvAVNKmD 150 (431)
T COG2895 86 RKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDAR--KGVLEQTRR--HSFIASLLGIRHVVVAVNKMD 150 (431)
T ss_pred ceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecc--hhhHHHhHH--HHHHHHHhCCcEEEEEEeeec
Confidence 9999999999853 2333332 3358899999986 565555544 556666665688999999999
Q ss_pred CCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHH
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLN 405 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~ 405 (435)
|++.++. .+++...+...+..-.......++++||+.|.||-
T Consensus 151 Lvdy~e~--~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 151 LVDYSEE--VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred ccccCHH--HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 9987632 22233333222222222334579999999999874
No 276
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=7.7e-11 Score=105.58 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=113.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeee--EEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGIL--MGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~--~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
.+++++++|..|.||+|++++.+.+.++....+.+-.+.. ..+-+.+..++..|||+|...... +...++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg--------lrdgyy 80 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG--------LRDGYY 80 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc--------cccccE
Confidence 4788999999999999999999988775433332222222 222222347899999999865432 112222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
-+. .+.++++|++ ..++..+...|...+.....+.|+++++||.|....... ..-..+.......+
T Consensus 81 I~~-qcAiimFdVt--sr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k-----------~k~v~~~rkknl~y 146 (216)
T KOG0096|consen 81 IQG-QCAIIMFDVT--SRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVK-----------AKPVSFHRKKNLQY 146 (216)
T ss_pred Eec-ceeEEEeeee--ehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccc-----------cccceeeeccccee
Confidence 222 5688889999 457888888899999988888999999999998655311 11222333445679
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||+++.|.+.-|-++.+.+..
T Consensus 147 ~~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 147 YEISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred EEeecccccccccchHHHhhhhcC
Confidence 999999999999999999987754
No 277
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-10 Score=108.65 Aligned_cols=91 Identities=27% Similarity=0.458 Sum_probs=73.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|.|+||||||+..+++.....+.|.|||...+.+.+.++|..++++|.||+.+.....+..-. + .-+...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGR-Q-viavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGR-Q-VIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCc-e-EEEEee
Confidence 44689999999999999999999888888999999999999999999999999999999887655432110 1 112334
Q ss_pred CCcEEEEEEeCCC
Q 037423 316 LPTAILFVHDLSG 328 (435)
Q Consensus 316 ~~d~il~ViD~s~ 328 (435)
.+|+|+.|+|++.
T Consensus 139 taDlilMvLDatk 151 (364)
T KOG1486|consen 139 TADLILMVLDATK 151 (364)
T ss_pred cccEEEEEecCCc
Confidence 4688999999874
No 278
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=2e-10 Score=113.63 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=62.9
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..++|+||||..... . . +....|.++++.+.. +..+.......+ .++|.++|+||+|+
T Consensus 126 g~D~viidT~G~~~~e------~-----~-i~~~aD~i~vv~~~~-----~~~el~~~~~~l----~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE------V-----D-IANMADTFVVVTIPG-----TGDDLQGIKAGL----MEIADIYVVNKADG 184 (300)
T ss_pred CCCEEEEeCCCCchhh------h-----H-HHHhhceEEEEecCC-----ccHHHHHHHHHH----hhhccEEEEEcccc
Confidence 6788999999975321 1 1 122236677665433 123333222222 35788999999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.............. ..+..... ....+++++||++|+|++++++++.+...
T Consensus 185 ~~~~~~~~~~~~~~---~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 185 EGATNVTIARLMLA---LALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred cchhHHHHHHHHHH---HHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 76531100000000 01111111 11246999999999999999999998754
No 279
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.13 E-value=1.2e-10 Score=119.89 Aligned_cols=162 Identities=16% Similarity=0.123 Sum_probs=104.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccc--c-CCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVC--N-YPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~--~-~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|..||||||||-+++++.+... + .|..+.- ..+.-+.....++||+...+. ++ .....
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~----~~----~l~~E 76 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDD----RL----CLRKE 76 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccch----hH----HHHHH
Confidence 456799999999999999999998765211 1 1111211 122223445789999854332 11 11222
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
++ .+++|+++++.++. .+.+.. ..|+..++..+ .+.|+|+|+||+|+........ +. .....+.+|.+.
T Consensus 77 ir-kA~vi~lvyavd~~--~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~--e~--~~~pim~~f~Ei 149 (625)
T KOG1707|consen 77 IR-KADVICLVYAVDDE--STVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSD--EV--NTLPIMIAFAEI 149 (625)
T ss_pred Hh-hcCEEEEEEecCCh--HHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccch--hH--HHHHHHHHhHHH
Confidence 22 34899999988753 333332 35999999987 7899999999999987764311 11 112223334332
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
..+|++||++-.++.++|....+.+.-
T Consensus 150 --EtciecSA~~~~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 150 --ETCIECSALTLANVSELFYYAQKAVIH 176 (625)
T ss_pred --HHHHhhhhhhhhhhHhhhhhhhheeec
Confidence 258999999999999999988876543
No 280
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.3e-10 Score=98.13 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=111.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
..-++.++|--|+||+++..++--.+... .. .|.+.....+.+.+.++++||.-|...-.+ +...++.+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvt-tk--Ptigfnve~v~yKNLk~~vwdLggqtSirP--------yWRcYy~d 85 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVT-TK--PTIGFNVETVPYKNLKFQVWDLGGQTSIRP--------YWRCYYAD 85 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccc-cC--CCCCcCccccccccccceeeEccCcccccH--------HHHHHhcc
Confidence 45679999999999999988775443311 11 234555667777888999999999864322 34445555
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHH-hcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKE-RFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~-~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
. +++|||+|.+++|..+..... ++..+.+ ...+..+++++||.|........+ . .....+....+. ...++
T Consensus 86 t-~avIyVVDssd~dris~a~~e-l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E----~-~~~L~l~~Lk~r-~~~Iv 157 (182)
T KOG0072|consen 86 T-DAVIYVVDSSDRDRISIAGVE-LYSMLQEEELQHAKLLVFANKQDYSGALTRSE----V-LKMLGLQKLKDR-IWQIV 157 (182)
T ss_pred c-ceEEEEEeccchhhhhhhHHH-HHHHhccHhhcCceEEEEeccccchhhhhHHH----H-HHHhChHHHhhh-eeEEE
Confidence 4 889999999998887776665 4444443 223567889999999875532111 1 111112222222 25799
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
..||.+|+|+++.++|+.+.+++.
T Consensus 158 ~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 158 KTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eeccccccCCcHHHHHHHHHHhcc
Confidence 999999999999999999988653
No 281
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2e-09 Score=98.51 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=104.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
..+.|.++|..++|||+|.-.|..+... ...|+.....+.+.++.....+||.||+.+- .......+.|
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~---~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl--------R~kl~e~~~~ 105 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR---GTVTSIEPNEATYRLGSENVTLVDLPGHSRL--------RRKLLEYLKH 105 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc---CeeeeeccceeeEeecCcceEEEeCCCcHHH--------HHHHHHHccc
Confidence 4578999999999999999988866321 1134556667777777888899999998542 2233344444
Q ss_pred --CCcEEEEEEeCCCCCCCCHHHHHH-HHHHHHHh---cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh-----
Q 037423 316 --LPTAILFVHDLSGECGTSPSDQFT-IYKEIKER---FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS----- 384 (435)
Q Consensus 316 --~~d~il~ViD~s~~~g~s~~~~~~-l~~~l~~~---~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 384 (435)
..-+|+||+|...- .-...+... ++.-+... -...|+++++||.|+............+..+...+..
T Consensus 106 ~~~akaiVFVVDSa~f-~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~ 184 (238)
T KOG0090|consen 106 NYSAKAIVFVVDSATF-LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSAL 184 (238)
T ss_pred cccceeEEEEEecccc-chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 44679999998743 222233322 33333332 1357899999999998776443222222222111111
Q ss_pred ----------------------hhhc--CCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 385 ----------------------YRKM--GPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 385 ----------------------~~~~--~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
|... ....+.+.|+++| +++++.+|+.+.
T Consensus 185 ~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 185 RSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 1111 1235788999988 899999999875
No 282
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.10 E-value=2.6e-09 Score=92.65 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=117.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCC---ceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGY---QNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
+.-+|++||.-+||||+++..++-.. ..-..+-.|-.|++...++.+. ..+.+.||.|+.....+ .-.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~e--------Lpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQE--------LPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhh--------hhH
Confidence 45689999999999999999987544 3334455566788888777643 46789999999765322 223
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
.+-..+|+.++|++..+ ..+++....+-++|...- ...|+++.+||+|+..+... +......|+...
T Consensus 80 hy~q~aDafVLVYs~~d--~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v---------d~d~A~~Wa~rE 148 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMD--PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV---------DMDVAQIWAKRE 148 (198)
T ss_pred hHhccCceEEEEecCCC--HHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhc---------CHHHHHHHHhhh
Confidence 34445699999999874 355655553444444421 34799999999999755422 223344566666
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
.+..++++|.....+-|.|..++..+..-..
T Consensus 149 kvkl~eVta~dR~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 149 KVKLWEVTAMDRPSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred heeEEEEEeccchhhhhHHHHHHHhccCCcc
Confidence 6789999999999999999999987755443
No 283
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.6e-09 Score=108.97 Aligned_cols=156 Identities=15% Similarity=0.125 Sum_probs=113.5
Q ss_pred EEEEecCCCCChhhHHHHhhCCC---CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK---PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT- 314 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~---~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~- 314 (435)
.|+.+|+-.-|||||+..+.+.. ..-....|+|.|.....+..++..+.++|.||+.+. ....+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~-----------i~~miag 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF-----------ISNLLAG 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH-----------HHHHHhh
Confidence 47888999999999999998653 234456689999999999988889999999999653 222222
Q ss_pred -cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 -HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 -~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
...|..++|+|++ +|...+....+ .+.+.+..+..++|+||+|..+..... +.. ..+.........++
T Consensus 71 ~~~~d~alLvV~~d--eGl~~qtgEhL--~iLdllgi~~giivltk~D~~d~~r~e----~~i---~~Il~~l~l~~~~i 139 (447)
T COG3276 71 LGGIDYALLVVAAD--EGLMAQTGEHL--LILDLLGIKNGIIVLTKADRVDEARIE----QKI---KQILADLSLANAKI 139 (447)
T ss_pred hcCCceEEEEEeCc--cCcchhhHHHH--HHHHhcCCCceEEEEeccccccHHHHH----HHH---HHHHhhcccccccc
Confidence 2348899999987 67777776632 344555556779999999998764211 111 11222222345678
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+.+|+++|+||++|.+.|.++..
T Consensus 140 ~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 140 FKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccccccCCCHHHHHHHHHHhhh
Confidence 99999999999999999999984
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.10 E-value=1.1e-09 Score=110.13 Aligned_cols=169 Identities=18% Similarity=0.195 Sum_probs=110.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC------cc----------ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP------EV----------CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~------~v----------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+-+.|+++.+...|||||+..|+...- .+ ....|.|.-.....+.|++.++.++||||+.+...
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 345799999999999999999985321 11 12334555444555778899999999999999875
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEH 379 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~ 379 (435)
+. |.. +.- -|.+++++|+. +|.-.|....+-+.+ +. +.+-|+|+||+|-........ .++.....
T Consensus 84 EV----ERv----l~M-VDgvlLlVDA~--EGpMPQTrFVlkKAl-~~--gL~PIVVvNKiDrp~Arp~~V-vd~vfDLf 148 (603)
T COG1217 84 EV----ERV----LSM-VDGVLLLVDAS--EGPMPQTRFVLKKAL-AL--GLKPIVVINKIDRPDARPDEV-VDEVFDLF 148 (603)
T ss_pred hh----hhh----hhh-cceEEEEEEcc--cCCCCchhhhHHHHH-Hc--CCCcEEEEeCCCCCCCCHHHH-HHHHHHHH
Confidence 43 221 222 28899999999 666677776443433 33 667788999999877653211 11111111
Q ss_pred HHHHhhhhcCCCcEEEcccCCC----------CCHHHHHHHHHHHHhccc
Q 037423 380 LEMASYRKMGPDGAIRVSVMNE----------EGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 380 ~~~~~~~~~~~~~~i~vSA~~g----------~GI~eL~~~i~~~l~~~~ 419 (435)
..+..--..-..|+++.|++.| .++..||+.|.+.++.-.
T Consensus 149 ~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 149 VELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 1111111223468999999987 468899999999876543
No 285
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=1.8e-09 Score=114.00 Aligned_cols=127 Identities=15% Similarity=0.192 Sum_probs=84.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-CccccC-CceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh--hhHHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-PEVCNY-PFTTRGILMGHINLGYQNFQITDTPGLLQRRDED--RNNLEKLTLAV 312 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~-~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~ie~~~~~~ 312 (435)
..+|+++|.+|+||||++|+|++.. +.++.. +.||. ........++..+.||||||+.+..... ...+......+
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3579999999999999999999875 455554 44444 4444445678899999999998764321 11222222334
Q ss_pred Hh-cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCCCCCC
Q 037423 313 LT-HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD---HIWLDVVSKCDLLQTS 366 (435)
Q Consensus 313 l~-~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~---~piIvV~NK~Dl~~~~ 366 (435)
+. ..+|++|||+.++.. ....++. .+++.+.+.|.. ..+|||+|.+|...++
T Consensus 197 Lsk~gpDVVLlV~RLd~~-~~D~eD~-~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppd 252 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQ-TRDSNDL-PLLRTITDVLGPSIWFNAIVTLTHAASAPPD 252 (763)
T ss_pred HhcCCCCEEEEEEeCCCc-cccHHHH-HHHHHHHHHhCHHhHcCEEEEEeCCccCCCC
Confidence 33 246889999876522 2222344 477788777643 5689999999998753
No 286
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.07 E-value=2.6e-09 Score=107.31 Aligned_cols=162 Identities=13% Similarity=0.081 Sum_probs=99.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC----CC------------ccccCCc---eeeeeeE---EEEEeC-----CceEEEE
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG----KP------------EVCNYPF---TTRGILM---GHINLG-----YQNFQIT 289 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~----~~------------~v~~~~~---tT~~~~~---~~~~~~-----~~~~~li 289 (435)
...++++|+.++|||||+|+|.+. .. .+++.+| ||.++.. ..++.. ..++.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 457899999999999999999865 21 4677888 8888765 333331 2678999
Q ss_pred eCCCCCCCCchhhhHH---------------------HHHHHHHHhcCCcEEEEEE-eCC----CCCCCCHHHHHHHHHH
Q 037423 290 DTPGLLQRRDEDRNNL---------------------EKLTLAVLTHLPTAILFVH-DLS----GECGTSPSDQFTIYKE 343 (435)
Q Consensus 290 DTpG~~~~~~~~~~~i---------------------e~~~~~~l~~~~d~il~Vi-D~s----~~~g~s~~~~~~l~~~ 343 (435)
||+|+.+......... +--+...+...++..++|. |.+ .+.++...+.. +..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~-~i~e 175 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER-VIEE 175 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH-HHHH
Confidence 9999876543211111 1114566662337677776 765 11234444443 7888
Q ss_pred HHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCC--CCCHHHHHHHHH
Q 037423 344 IKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMN--EEGLNELKDRVY 412 (435)
Q Consensus 344 l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~--g~GI~eL~~~i~ 412 (435)
+++. ++|+++|+||+|-..... .++ ...+....+.|++++|+.. .+.|..+++.+.
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~et-----~~l------~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHPET-----EAL------RQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCchh-----HHH------HHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 9887 899999999999432221 011 1112223346778888753 333444444433
No 287
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=9.4e-10 Score=106.18 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=100.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc------------cccCCc---------------eeeeeeE--EEEEeCCceE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE------------VCNYPF---------------TTRGILM--GHINLGYQNF 286 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~------------v~~~~~---------------tT~~~~~--~~~~~~~~~~ 286 (435)
+...|+.+|+-.-|||||..+|++-... --.|.. ++..... +.-.---+++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4557899999999999999999863110 000100 1100000 0000001567
Q ss_pred EEEeCCCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCHHHHHHH-HHHHHHhcCCCcEEEEEeccCCC
Q 037423 287 QITDTPGLLQRRDEDRNNLEKLTLAVLTHL--PTAILFVHDLSGECGTSPSDQFTI-YKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 287 ~liDTpG~~~~~~~~~~~ie~~~~~~l~~~--~d~il~ViD~s~~~g~s~~~~~~l-~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
.|+|.||+. -+....+... =|+.++|+.+++.|+. .|...++ .-++.. -+.+|+|-||+|++
T Consensus 89 SfVDaPGHe-----------~LMATMLsGAAlMDgAlLvIaANEpcPQ-PQT~EHl~AleIig---ik~iiIvQNKIDlV 153 (415)
T COG5257 89 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQ-PQTREHLMALEIIG---IKNIIIVQNKIDLV 153 (415)
T ss_pred EEeeCCchH-----------HHHHHHhcchhhhcceEEEEecCCCCCC-CchHHHHHHHhhhc---cceEEEEeccccee
Confidence 899999983 1233333322 2779999999998864 3333222 222322 47899999999999
Q ss_pred CCCCccccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 364 QTSPVAYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+.+.. .+....+.+|.+ ..+.|++++||..+.||+-|+++|.+.+..-.+
T Consensus 154 ~~E~A-------lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 154 SRERA-------LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred cHHHH-------HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 87522 222233444432 345699999999999999999999998765443
No 288
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=1.4e-09 Score=97.63 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=43.6
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKC 360 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~ 360 (435)
..+.|+||||+........ ..+..++ +.+|+++||++++. ..+..+...+.+..... ...+++|+||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~----~~~~~~~-~~~d~vi~V~~~~~--~~~~~~~~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHT----EITEEYL-PKADVVIFVVDANQ--DLTESDMEFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTS----HHHHHHH-STTEEEEEEEETTS--TGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhH----HHHHHhh-ccCCEEEEEeccCc--ccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence 4468999999976432222 3455556 55699999999883 44445555455444443 45699999995
No 289
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=103.81 Aligned_cols=173 Identities=21% Similarity=0.136 Sum_probs=106.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCC--CchhhhHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQR--RDEDRNNLEKLT 309 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~--~~~~~~~ie~~~ 309 (435)
.+.+.+++.|.+|||||+|+|.+.+... ..+..++-|+.+...++ +.+|.++|.||.... ..+....+..++
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhHhH
Confidence 3567899999999999999999986542 23336677777665554 568999999994321 122233445555
Q ss_pred HHHHhcCC--cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc--cccchhhhHHHHHHHhh
Q 037423 310 LAVLTHLP--TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV--AYVTEDEDSEHLEMASY 385 (435)
Q Consensus 310 ~~~l~~~~--d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~ 385 (435)
..++.+.. -.+++++|++ .++..-|.. .++.+.+. +.|+.+|+||||....... .+...........+.+-
T Consensus 211 ~~Y~leR~nLv~~FLLvd~s--v~i~~~D~~-~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~ 285 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDAS--VPIQPTDNP-EIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG 285 (320)
T ss_pred HHHHHhhhhhheeeeeeecc--CCCCCCChH-HHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence 55543332 2367778988 455555554 34444453 8999999999998754321 11111111111111111
Q ss_pred hhcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 386 RKMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 386 ~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.-....|.+.+|+.++.|+++|+-.+....
T Consensus 286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ceeccCCceeeecccccCceeeeeehhhhh
Confidence 111224677899999999999987766543
No 290
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.03 E-value=1.9e-09 Score=102.20 Aligned_cols=173 Identities=16% Similarity=0.189 Sum_probs=96.7
Q ss_pred EEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+|+++|+.|+||||..+.+...- +.-..+-+.|.++...++.. +...+.+||.||....... .+.......+++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~---~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN---YFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT---THTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc---cccccHHHHHhcc
Confidence 58999999999999999988653 32223446777777777754 4569999999999765322 1111122334444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHH---HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 317 PTAILFVHDLSGECGTSPSDQF---TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~---~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
++++||+|+... .-.++.. ..+..+.+..++..+.+.+.|+|+...+.......+..+.......-.......+
T Consensus 78 -~~LIyV~D~qs~--~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~ 154 (232)
T PF04670_consen 78 -GVLIYVFDAQSD--DYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITF 154 (232)
T ss_dssp -SEEEEEEETT-S--TCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEE
T ss_pred -CEEEEEEEcccc--cHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence 789999998733 1233333 3445555666888999999999998765332222222222111111111112457
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.+|.-. +.+-+.+..|...+-..
T Consensus 155 ~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 155 FLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp EEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred EeccCcC-cHHHHHHHHHHHHHccc
Confidence 7777766 56777777776655443
No 291
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.02 E-value=6.4e-10 Score=99.30 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=61.4
Q ss_pred HHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCce
Q 037423 207 EEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQN 285 (435)
Q Consensus 207 ~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~ 285 (435)
..+++..+.+++.|.+....+.... -......++++|.||+|||||+|++.+... .+++.|++|++...... +..
T Consensus 73 ~~iSa~~~~~~~~L~~~l~~~~~~~-~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~ 148 (157)
T cd01858 73 FHASINNPFGKGSLIQLLRQFSKLH-SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MKR 148 (157)
T ss_pred EEeeccccccHHHHHHHHHHHHhhh-ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CCC
Confidence 3466777788888887655443221 012356788999999999999999998654 78999999998654432 345
Q ss_pred EEEEeCCCC
Q 037423 286 FQITDTPGL 294 (435)
Q Consensus 286 ~~liDTpG~ 294 (435)
+.++||||+
T Consensus 149 ~~liDtPGi 157 (157)
T cd01858 149 IYLIDCPGV 157 (157)
T ss_pred EEEEECcCC
Confidence 889999996
No 292
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.02 E-value=4.1e-10 Score=102.55 Aligned_cols=121 Identities=26% Similarity=0.370 Sum_probs=62.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe---CCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL---GYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
+.+.|+++|+.|+|||+|...|..+..... .|+..... .+.. .+..+.+||+||+.+-... .++.+ ..
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T---~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~---~~~~~--~~ 72 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPT---VTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSK---LLDEL--KY 72 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B------SSEEE-ECCGSSTCGTCECEEEETT-HCCCHH---HHHHH--HH
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCe---eccccCCc-eEEeecCCCCEEEEEECCCcHHHHHH---HHHhh--hc
Confidence 356899999999999999999987633100 11121111 1122 4568999999999664321 11111 12
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHh---cCCCcEEEEEeccCCCCCCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKER---FSDHIWLDVVSKCDLLQTSP 367 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~---~~~~piIvV~NK~Dl~~~~~ 367 (435)
+.. +.+|+||+|++.. .-...+.. .++.-+... ....|+++++||.|+.....
T Consensus 73 ~~~-~k~IIfvvDSs~~-~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 73 LSN-AKGIIFVVDSSTD-QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HGG-EEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred hhh-CCEEEEEEeCccc-hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 333 4789999998721 00111111 122222221 14689999999999987653
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.01 E-value=2.4e-09 Score=107.64 Aligned_cols=171 Identities=15% Similarity=0.107 Sum_probs=88.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTL 310 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~ 310 (435)
...|+++|.+|+|||||||+|.|-.. .++ ...||.....+... ..-.+.+||.||+..........++...
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~- 111 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK- 111 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc-
Confidence 45799999999999999999976211 111 12355555443321 2246899999999765443323222221
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC--CC---CCccccchhhhHH-HHHHHh
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL--QT---SPVAYVTEDEDSE-HLEMAS 384 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~--~~---~~~~~~~~~~~~~-~~~~~~ 384 (435)
-..-|.+|++.+ ..++..+.. +.+.+... ++|+.+|-||+|.. .. .+.....++.... .....+
T Consensus 112 ---~~~yD~fiii~s----~rf~~ndv~-La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 112 ---FYRYDFFIIISS----ERFTENDVQ-LAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp ---GGG-SEEEEEES----SS--HHHHH-HHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ---ccccCEEEEEeC----CCCchhhHH-HHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 122376666655 236666665 78888886 89999999999951 11 1111111111111 111111
Q ss_pred -hh--hcCCCcEEEcccCCC--CCHHHHHHHHHHHHhcccc
Q 037423 385 -YR--KMGPDGAIRVSVMNE--EGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 385 -~~--~~~~~~~i~vSA~~g--~GI~eL~~~i~~~l~~~~~ 420 (435)
+. .....++|-||+..- ..+..|.+.+.+-+....+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 11 123357899998764 4688898888887776654
No 294
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.00 E-value=7.1e-10 Score=105.94 Aligned_cols=127 Identities=22% Similarity=0.234 Sum_probs=59.2
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhc-CCCcEEEEEeccC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLT-HLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERF-SDHIWLDVVSKCD 361 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~-~~~piIvV~NK~D 361 (435)
.+.++||||+.+--. .+..+..+. ..+. ...-++++++|+.- -.+..+.. .++..+.-.. .+.|.|.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~-~~L~~~~~~~~v~LvD~~~--~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIV-ERLQKNGRLVVVFLVDSSF--CSDPSKFVSSLLLSLSIMLRLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHH-HTSSS----EEEEEE-GGG---SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEE-echhHHHHH-HHHhhhcceEEEEEEeccc--ccChhhHHHHHHHHHHHHhhCCCCEEEeeeccC
Confidence 789999999965321 111122111 1222 33457899999872 22333322 1122211111 2789999999999
Q ss_pred CCCCC--Cccccchhh-----------hHHHHHHHhhhhc-CCC-cEEEcccCCCCCHHHHHHHHHHHH
Q 037423 362 LLQTS--PVAYVTEDE-----------DSEHLEMASYRKM-GPD-GAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 362 l~~~~--~~~~~~~~~-----------~~~~~~~~~~~~~-~~~-~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+.+.. .......+. ......+...... ... .++++|+++++|+++|+..|.+++
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98732 000000000 0111122222222 233 799999999999999999998875
No 295
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.99 E-value=2.8e-09 Score=89.64 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=87.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.+++++|..|+|||||.+++.+..... ..|. -+++++. ..|||||-.-.... -..++.....-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly----kKTQ-----Ave~~d~--~~IDTPGEy~~~~~-----~Y~aL~tt~~da 65 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY----KKTQ-----AVEFNDK--GDIDTPGEYFEHPR-----WYHALITTLQDA 65 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh----cccc-----eeeccCc--cccCCchhhhhhhH-----HHHHHHHHhhcc
Confidence 468999999999999999998865421 1111 1233221 26999997543211 111222223334
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
+++++|..++++. +.--- -+... ..+|+|-|++|.||.....+ ......+ .+.+..++|.+|
T Consensus 66 dvi~~v~~and~~--s~f~p-----~f~~~-~~k~vIgvVTK~DLaed~dI-------~~~~~~L---~eaGa~~IF~~s 127 (148)
T COG4917 66 DVIIYVHAANDPE--SRFPP-----GFLDI-GVKKVIGVVTKADLAEDADI-------SLVKRWL---REAGAEPIFETS 127 (148)
T ss_pred ceeeeeecccCcc--ccCCc-----ccccc-cccceEEEEecccccchHhH-------HHHHHHH---HHcCCcceEEEe
Confidence 8899998887442 11111 11122 25779999999999864311 1111112 233456899999
Q ss_pred cCCCCCHHHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVYQM 414 (435)
Q Consensus 398 A~~g~GI~eL~~~i~~~ 414 (435)
+.++.|+++|++.+...
T Consensus 128 ~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 128 AVDNQGVEELVDYLASL 144 (148)
T ss_pred ccCcccHHHHHHHHHhh
Confidence 99999999999988653
No 296
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=7.6e-09 Score=88.52 Aligned_cols=162 Identities=18% Similarity=0.212 Sum_probs=107.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+.-+++.+|-.++||||++..+.-....+ .-.|.++....+.+.+..+.+||..|... +..+...++..
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~---~ipTvGFnvetVtykN~kfNvwdvGGqd~--------iRplWrhYy~g 84 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIPTVGFNVETVTYKNVKFNVWDVGGQDK--------IRPLWRHYYTG 84 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcc---cccccceeEEEEEeeeeEEeeeeccCchh--------hhHHHHhhccC
Confidence 45679999999999999999987554321 23466778888899999999999999843 33444444444
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER-FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~-~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..++|||+|.+++....... .+++..+... ..+.|+++..||.|+.+.-... ...+..++... .....-+.
T Consensus 85 -tqglIFV~Dsa~~dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pq-----ei~d~leLe~~-r~~~W~vq 156 (180)
T KOG0071|consen 85 -TQGLIFVVDSADRDRIEEAR-NELHRIINDREMRDAIILILANKQDLPDAMKPQ-----EIQDKLELERI-RDRNWYVQ 156 (180)
T ss_pred -CceEEEEEeccchhhHHHHH-HHHHHHhCCHhhhcceEEEEecCcccccccCHH-----HHHHHhccccc-cCCccEee
Confidence 37899999988553222211 1233333321 1357899999999998764221 11122222221 12223578
Q ss_pred EcccCCCCCHHHHHHHHHHHHh
Q 037423 395 RVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++||.+|.|+.|=+.++.+.++
T Consensus 157 p~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 157 PSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccccccchhHHHHHHHHHhhcc
Confidence 9999999999999999987654
No 297
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=8.3e-09 Score=100.40 Aligned_cols=165 Identities=19% Similarity=0.220 Sum_probs=102.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------CccccCCceeeeeeEEEEEeC---------CceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------PEVCNYPFTTRGILMGHINLG---------YQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------~~v~~~~~tT~~~~~~~~~~~---------~~~~~liDTpG~~~~~~ 299 (435)
....+++.|+..+|||||.++++.-. -..+...+.|.|.....+... ...+.++|.||+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 34679999999999999999997421 123334556666554444331 24568999999842
Q ss_pred hhhhHHHHHHHHHH--hcCCcEEEEEEeCCCCCCCCHHHHHH-HHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhh
Q 037423 300 EDRNNLEKLTLAVL--THLPTAILFVHDLSGECGTSPSDQFT-IYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDED 376 (435)
Q Consensus 300 ~~~~~ie~~~~~~l--~~~~d~il~ViD~s~~~g~s~~~~~~-l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~ 376 (435)
+....+ ...-|..++|+|+. .|...+...- ++.++. -+..|+|+||+|+..+.......++..
T Consensus 83 --------LIRtiiggaqiiDlm~lviDv~--kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 83 --------LIRTIIGGAQIIDLMILVIDVQ--KGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred --------HHHHHHhhhheeeeeeEEEehh--cccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHH
Confidence 111111 22237789999998 4544443331 222222 356789999999987754433333333
Q ss_pred HHHHHHHhhhh-cCCCcEEEcccCCC----CCHHHHHHHHHHHHhc
Q 037423 377 SEHLEMASYRK-MGPDGAIRVSVMNE----EGLNELKDRVYQMLVG 417 (435)
Q Consensus 377 ~~~~~~~~~~~-~~~~~~i~vSA~~g----~GI~eL~~~i~~~l~~ 417 (435)
.....-.+-.. .+..|++++||+.| ++|.+|.+.+.+.+..
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 33333222222 34479999999999 7888888888776644
No 298
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.1e-08 Score=102.58 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=83.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhh--CCC--------------C------ccccCCceeeeeeEEEEEeCCceEEEEeCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS--TGK--------------P------EVCNYPFTTRGILMGHINLGYQNFQITDTPG 293 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~--~~~--------------~------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG 293 (435)
+.++.+||.+|.+|||||...|+ +.. . ......|.+.....-.++|.+..+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 34678999999999999999876 211 0 1122345555556677889999999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 294 LLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 294 ~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
+.+.... +.+.+... |+.+.|+|+. .|...+... +++-.+-+ +.|++-.+||+|-...
T Consensus 91 HeDFSED--------TYRtLtAv-DsAvMVIDaA--KGiE~qT~K-LfeVcrlR--~iPI~TFiNKlDR~~r 148 (528)
T COG4108 91 HEDFSED--------TYRTLTAV-DSAVMVIDAA--KGIEPQTLK-LFEVCRLR--DIPIFTFINKLDREGR 148 (528)
T ss_pred ccccchh--------HHHHHHhh-heeeEEEecc--cCccHHHHH-HHHHHhhc--CCceEEEeeccccccC
Confidence 9887643 22222222 7899999998 788888876 66554443 8999999999996544
No 299
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.96 E-value=6.4e-09 Score=114.65 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=74.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCcc----------cc------CCceeeeeeEEEEEe----CCceEEEEeCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEV----------CN------YPFTTRGILMGHINL----GYQNFQITDTPGLL 295 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v----------~~------~~~tT~~~~~~~~~~----~~~~~~liDTpG~~ 295 (435)
+-+.|+++|+.++|||||+.+|+...-.+ .+ ..+.|.......+.+ ++..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 45679999999999999999987321100 00 112344333333333 35678999999997
Q ss_pred CCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 296 QRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 296 ~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
+.. .....++.. .|++++|+|+. .|...++...| ..+... +.|.|+++||+|....
T Consensus 99 df~--------~~~~~~l~~-~D~avlVvda~--~g~~~~t~~~~-~~~~~~--~~~~iv~iNK~D~~~~ 154 (731)
T PRK07560 99 DFG--------GDVTRAMRA-VDGAIVVVDAV--EGVMPQTETVL-RQALRE--RVKPVLFINKVDRLIK 154 (731)
T ss_pred ChH--------HHHHHHHHh-cCEEEEEEECC--CCCCccHHHHH-HHHHHc--CCCeEEEEECchhhcc
Confidence 742 123334433 38899999988 56666665533 333333 5788999999998743
No 300
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.94 E-value=6.7e-09 Score=101.61 Aligned_cols=124 Identities=22% Similarity=0.258 Sum_probs=72.6
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCcccc--CC------ceeeeeeE--EEEEeCC--ceEEEEeCCCCCCCCchh----
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCN--YP------FTTRGILM--GHINLGY--QNFQITDTPGLLQRRDED---- 301 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~--~~------~tT~~~~~--~~~~~~~--~~~~liDTpG~~~~~~~~---- 301 (435)
++|+++|.+|+|||||+|.|++....... .+ ..|..+.. ..+.-++ ..+.++||||+.+.....
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 57999999999999999999976542221 11 11222222 2222233 467899999998754321
Q ss_pred --hhHHHHHHHHHHhc------------CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 302 --RNNLEKLTLAVLTH------------LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 302 --~~~ie~~~~~~l~~------------~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.+.++.+-..++.. .-|++||++++++ .+....|.. .++.+.+ ..++|-|+.|+|.....
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~-~~L~~~Di~-~mk~Ls~---~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTG-HGLKPLDIE-FMKRLSK---RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTS-SSS-HHHHH-HHHHHTT---TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCC-ccchHHHHH-HHHHhcc---cccEEeEEecccccCHH
Confidence 11222222222210 0278999999986 467777775 5555555 47899999999998754
No 301
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.94 E-value=2.5e-09 Score=101.65 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=86.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC------CCC---c---cccCCc------------eee--eeeEEEEEe--------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST------GKP---E---VCNYPF------------TTR--GILMGHINL-------- 281 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~------~~~---~---v~~~~~------------tT~--~~~~~~~~~-------- 281 (435)
+...|++.|+||+|||||++.|.. .++ . .++..+ .+. +.+......
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 567899999999999999998862 121 1 111111 011 112221111
Q ss_pred ------------CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 037423 282 ------------GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS 349 (435)
Q Consensus 282 ------------~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~ 349 (435)
-|..++|+.|.|... +...+...+|.+++|+-+. .|...|-.+.=+-++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ------------sE~~I~~~aD~~v~v~~Pg--~GD~iQ~~KaGimEi----- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQ------------SEVDIADMADTVVLVLVPG--LGDEIQAIKAGIMEI----- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSST------------HHHHHHTTSSEEEEEEESS--TCCCCCTB-TTHHHH-----
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCc------------cHHHHHHhcCeEEEEecCC--CccHHHHHhhhhhhh-----
Confidence 167889999999964 3344566678898988876 344444433222222
Q ss_pred CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh----cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 350 DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK----MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 350 ~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.-|+|+||+|....+ ....+......+.. ....|++.+||.+|+||++|++.|.+...
T Consensus 169 --aDi~vVNKaD~~gA~-------~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 169 --ADIFVVNKADRPGAD-------RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp ---SEEEEE--SHHHHH-------HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred --ccEEEEeCCChHHHH-------HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 336999999944322 11222222222221 12358999999999999999999998653
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=98.93 E-value=3.7e-09 Score=117.85 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=76.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCcc-ccC---------------CceeeeeeEEEEEeC----------CceEEEE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEV-CNY---------------PFTTRGILMGHINLG----------YQNFQIT 289 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v-~~~---------------~~tT~~~~~~~~~~~----------~~~~~li 289 (435)
+-+.|+++|+.++|||||+++|+.....+ ... .+.|.+.....+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 45689999999999999999997532110 111 123333222233333 4568999
Q ss_pred eCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 290 DTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 290 DTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
||||+.+... ....++.. .|++++|+|+. .|...++.. ++..+... +.|+|+|+||+|+.
T Consensus 98 DtPG~~~f~~--------~~~~al~~-~D~ailVvda~--~g~~~~t~~-~~~~~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSS--------EVTAALRV-TDGALVVVDCV--EGVCVQTET-VLRQALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHH--------HHHHHHhc-CCeEEEEEECC--CCcCccHHH-HHHHHHHc--CCCEEEEEEChhhh
Confidence 9999976321 23334433 48999999988 567777665 45556554 68999999999987
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.92 E-value=4.6e-09 Score=115.57 Aligned_cols=116 Identities=15% Similarity=0.068 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC---------------C-ccccCCceeeeeeEE----EEEeCCceEEEEeCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK---------------P-EVCNYPFTTRGILMG----HINLGYQNFQITDTPGLL 295 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~---------------~-~v~~~~~tT~~~~~~----~~~~~~~~~~liDTpG~~ 295 (435)
..++|+++|+.++|||||+++|+... . ......+.|.+.... .+.+++..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45789999999999999999986321 0 000112344433222 244567789999999997
Q ss_pred CCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 296 QRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 296 ~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
+... ....++.. +|++++|+|+. .|...++.. ++..+... +.|.++|+||+|....
T Consensus 98 ~f~~--------~~~~al~~-aD~~llVvda~--~g~~~~t~~-~~~~~~~~--~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 98 DFGG--------DVTRAMRA-VDGAIVVVCAV--EGVMPQTET-VLRQALKE--NVKPVLFINKVDRLIN 153 (720)
T ss_pred ccHH--------HHHHHHHh-cCEEEEEEecC--CCCCccHHH-HHHHHHHc--CCCEEEEEEChhcccc
Confidence 6421 23344444 48999999987 455555544 33444443 6788999999998753
No 304
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=8.2e-09 Score=108.60 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=110.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC------------------CceEEEEeCCCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG------------------YQNFQITDTPGLLQ 296 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~~ 296 (435)
.+.|.+|++|+..+|||-|+..+.+..+.-+...|.|..+....+... --.+.+|||||+..
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 467899999999999999999998877766666666654332222211 12368999999754
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc------cc
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV------AY 370 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~------~~ 370 (435)
+.. ....-..++|.+|+|+|+- .|...+... -+..++.. +.|+|+.+||+|-+-.-.. ..
T Consensus 553 Ftn---------lRsrgsslC~~aIlvvdIm--hGlepqtiE-Si~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144|consen 553 FTN---------LRSRGSSLCDLAILVVDIM--HGLEPQTIE-SINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred hhh---------hhhccccccceEEEEeehh--ccCCcchhH-HHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHH
Confidence 321 1222345678999999998 677777776 45666665 7899999999996532110 00
Q ss_pred --------cchhhhHHHH-HHHhhhhcC--------------CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 371 --------VTEDEDSEHL-EMASYRKMG--------------PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 371 --------~~~~~~~~~~-~~~~~~~~~--------------~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
..+++..... .+.+|.+.+ .+.++++||.+|+||.+|+-+|.++-+..
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 0111111111 112222111 23578999999999999999999876543
No 305
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.91 E-value=6.4e-09 Score=89.08 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=105.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
.+..++++.|-.|+|||||+..|.+.++. . -..|.++....+.+++ .++.+||..|...-. .+...++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~--h-ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IR--------pyWsNYy 83 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR--H-LTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIR--------PYWSNYY 83 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh--h-ccccCCcceEEEeecCcEEEEEEecCCccccc--------hhhhhhh
Confidence 45678999999999999999999877652 1 1235666666777766 899999999986432 2344555
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
++. |.++||+|.++... +++...-+-++.+. ....|+.+..||.|++...........+.-.... ....
T Consensus 84 env-d~lIyVIDS~D~kr--feE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lr------dRsw 154 (185)
T KOG0074|consen 84 ENV-DGLIYVIDSTDEKR--FEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLR------DRSW 154 (185)
T ss_pred hcc-ceEEEEEeCCchHh--HHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhh------hceE
Confidence 565 88999999664322 22222112222221 1368999999999998765332211111111111 1124
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.+-.+||.+++|+..-.++++....
T Consensus 155 hIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 155 HIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred EeeeCccccccCccCcchhhhcCCC
Confidence 6789999999999999998876544
No 306
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.89 E-value=2.6e-07 Score=92.01 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=84.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC------CCcc-ccCCc------------eeeeeeEEEE-----------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG------KPEV-CNYPF------------TTRGILMGHI----------------- 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~------~~~v-~~~~~------------tT~~~~~~~~----------------- 279 (435)
++..++++|++|+||||++..++.. ++.+ ..-.+ .-.+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999988631 1110 00000 0001110000
Q ss_pred EeCCceEEEEeCCCCCCCCchhhhHHHHHHH---HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 037423 280 NLGYQNFQITDTPGLLQRRDEDRNNLEKLTL---AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDV 356 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~---~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV 356 (435)
...+..+++|||||.........+++.++.. ..+...++.+++|+|++ .|.. +... .....+. -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~--~g~~--~~~~-a~~f~~~--~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT--TGQN--ALSQ-AKAFHEA--VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC--CChH--HHHH-HHHHHhh--CCCCEEE
Confidence 0134678999999997765544444444332 12234467789999998 3332 2221 2222221 1345689
Q ss_pred EeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHH
Q 037423 357 VSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKD 409 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~ 409 (435)
+||.|...... .........+.|+.+++ +|++++++..
T Consensus 266 lTKlD~t~~~G-------------~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAKGG-------------VVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCCcc-------------HHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 99999654321 11111222246899998 7889887753
No 307
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.88 E-value=1.9e-08 Score=96.92 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=66.8
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
|..++||.|-|.... ...+.+.+|.+++|.-+. .|...|-.+.= +.+ .--|+|+||.|.
T Consensus 143 G~DvIIVETVGvGQs------------ev~I~~~aDt~~~v~~pg--~GD~~Q~iK~G---imE----iaDi~vINKaD~ 201 (323)
T COG1703 143 GYDVIIVETVGVGQS------------EVDIANMADTFLVVMIPG--AGDDLQGIKAG---IME----IADIIVINKADR 201 (323)
T ss_pred CCCEEEEEecCCCcc------------hhHHhhhcceEEEEecCC--CCcHHHHHHhh---hhh----hhheeeEeccCh
Confidence 678899999998653 233444467777776554 34333333321 222 334699999995
Q ss_pred CCCCCccccchhhhHHHHHHHh-h-hhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 363 LQTSPVAYVTEDEDSEHLEMAS-Y-RKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
...+. ...++........+ + ......|++.+||.+|+|+++|++.|.+...-.
T Consensus 202 ~~A~~---a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 202 KGAEK---AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred hhHHH---HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 43321 11111111111111 1 122346899999999999999999999987543
No 308
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.88 E-value=7.2e-09 Score=94.20 Aligned_cols=56 Identities=32% Similarity=0.539 Sum_probs=47.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 294 (435)
...+++++|.||+|||||+|++++... .+++.||+|++.....+ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 457899999999999999999998664 88999999998776554 346899999996
No 309
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.88 E-value=6.8e-09 Score=115.94 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-cccc---------------CCceeeeeeEEEEEe----------------CC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCN---------------YPFTTRGILMGHINL----------------GY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~---------------~~~tT~~~~~~~~~~----------------~~ 283 (435)
+-+.|+++|+.++|||||+.+|+...- .... ..+.|.......+.+ .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 456899999999999999999874321 0001 112333332333333 25
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..+.++||||+.+... ....++ ...|++++|+|+. .|...+... ++..+... ++|+|+++||+|..
T Consensus 98 ~~inliDtPGh~dF~~--------e~~~al-~~~D~ailVvda~--~Gv~~~t~~-~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSS--------EVTAAL-RITDGALVVVDCI--EGVCVQTET-VLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHH--------HHHHHH-hhcCEEEEEEECC--CCCcccHHH-HHHHHHHC--CCCEEEEEECCccc
Confidence 6689999999965321 123333 3358899999998 677777765 44445543 78999999999987
Q ss_pred C
Q 037423 364 Q 364 (435)
Q Consensus 364 ~ 364 (435)
.
T Consensus 164 ~ 164 (843)
T PLN00116 164 F 164 (843)
T ss_pred c
Confidence 3
No 310
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.87 E-value=3.1e-09 Score=97.88 Aligned_cols=81 Identities=27% Similarity=0.376 Sum_probs=63.3
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCC---------CCccccCCceeeeee
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTG---------KPEVCNYPFTTRGIL 275 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~---------~~~v~~~~~tT~~~~ 275 (435)
.+..+++..+.++++|.+.+... +| .+..++++|.+|+|||||+|+|.+. ...++..|+||++..
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~--l~----~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~ 174 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKL--AK----KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLI 174 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hh----cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeE
Confidence 45667888899999988754332 22 4578999999999999999999863 246788899999987
Q ss_pred EEEEEeCCceEEEEeCCCC
Q 037423 276 MGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 276 ~~~~~~~~~~~~liDTpG~ 294 (435)
...+.. .+.++||||+
T Consensus 175 ~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 175 KIPLGN---GKKLYDTPGI 190 (190)
T ss_pred EEecCC---CCEEEeCcCC
Confidence 666532 5789999996
No 311
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.87 E-value=1.1e-08 Score=112.83 Aligned_cols=152 Identities=23% Similarity=0.273 Sum_probs=108.9
Q ss_pred HHHhhhhhhcccccchhHHHHHHHH-HHHHHHHHHHhchhHHHhhhcCCCcccchHHHHHhhhhcCCCCcHHHHHHHHHH
Q 037423 92 ALKKAKRVSATKGISNIAKRERNKA-AKQLDALMKELAVPLRDYVANFPNRKCLHPYERSLTELTLGDGNYEKVLKNVDA 170 (435)
Q Consensus 92 ~~~r~~~~~~~~~~~~~~~~~r~~~-~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~~l~e~~~~~~~y~~~L~~l~~ 170 (435)
.+.+.++++.+++.+++.+.||+|| ++||+.++++|++ ..++.++++.|.+.+.+..++++..+.+..++++
T Consensus 205 eil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 277 (784)
T PRK10787 205 DLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE-------MDDAPDENEALKRKIDAAKMPKEAKEKAEAELQK 277 (784)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccC-------CCcchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3445677888899999999999999 8999999999997 2344568899999999999999999999999998
Q ss_pred HhhhHH-----HHhhHHH----HHhhcccc-----HHHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCccCCC
Q 037423 171 LRKKVV-----SAGKEHA----SLCAKSLS-----KREAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLE 236 (435)
Q Consensus 171 ~~~~i~-----~i~k~~~----~l~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~ 236 (435)
++.... .+.+.|. +++|...+ ..+++..+...++.+..+..+ +.+........ -..+
T Consensus 278 ~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~-------i~~~l~~~~~~--~~~~ 348 (784)
T PRK10787 278 LKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDR-------ILEYLAVQSRV--NKIK 348 (784)
T ss_pred HHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHH-------HHHHHHHHHhc--ccCC
Confidence 876432 2333343 45676543 344566666655555555544 23222211111 1235
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++.++++|+||+||||+.+.+++
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999999875
No 312
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-08 Score=104.22 Aligned_cols=160 Identities=16% Similarity=0.141 Sum_probs=100.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------------------------------CccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------------------------------PEVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------------------------------~~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
....++++|+..+|||||+.+++-.- .......|.|.+....+++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34568999999999999999876210 01122456788888888888888
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCC---CCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGE---CGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~---~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
.++++|+||+.+.... ++.- ..-+|+.++|+|++.. .|+....|..-+..+.+.+.-..+|+++||+|
T Consensus 256 ~~tliDaPGhkdFi~n--------mi~g-~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD 326 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPN--------MISG-ASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMD 326 (603)
T ss_pred eEEEecCCCccccchh--------hhcc-ccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccc
Confidence 9999999998765431 1111 1224889999999853 13333233222333444444567999999999
Q ss_pred CCCCCCccccchhhhHHHHHHH----hhhhcCCCcEEEcccCCCCCHHHH
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMA----SYRKMGPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~vSA~~g~GI~eL 407 (435)
+++-.+.. ++++......+. .|.+ ....+++||+.+|+|+...
T Consensus 327 ~V~Wsq~R--F~eIk~~l~~fL~~~~gf~e-s~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 327 LVSWSQDR--FEEIKNKLSSFLKESCGFKE-SSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccCccHHH--HHHHHHHHHHHHHHhcCccc-CCcceEecccccCCccccc
Confidence 99765321 122222222211 2222 2247999999999998544
No 313
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.85 E-value=6.4e-09 Score=92.65 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=65.5
Q ss_pred cchhHHHHhhcCCChhHHHHHHHHh-----cc--CCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeee
Q 037423 203 LQRLEEVFNREGKAVDDLLNIAKTL-----RA--MPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGI 274 (435)
Q Consensus 203 ~~~~~~v~~~~~~~l~~L~~~~~~l-----~~--lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~ 274 (435)
...+..+++..+.+++.|.+..... .. ..........++++|.||+||||++|.+++.. ..++..++||++.
T Consensus 59 ~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~ 138 (155)
T cd01849 59 PTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ 138 (155)
T ss_pred CceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce
Confidence 3445678888888888888754221 00 00012456889999999999999999999765 4688889999998
Q ss_pred eEEEEEeCCceEEEEeCCCC
Q 037423 275 LMGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 275 ~~~~~~~~~~~~~liDTpG~ 294 (435)
....+ +..+.++||||+
T Consensus 139 ~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 139 QEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred EEEEe---cCCEEEEECCCC
Confidence 76544 356899999996
No 314
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.85 E-value=1.8e-09 Score=107.67 Aligned_cols=63 Identities=32% Similarity=0.451 Sum_probs=52.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
....+++++|.|||||||+||+|++... .+++.||+|++.....+.. .+.++||||+......
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~---~i~LlDtPGii~~~~~ 193 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDD---GIYLLDTPGIIPPKFD 193 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCC---CeEEecCCCcCCCCcc
Confidence 3457899999999999999999998764 8999999999988766643 4789999999876543
No 315
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.7e-08 Score=106.37 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=111.8
Q ss_pred HHHhhhhhhcccccchhHHHHHHHH-HHHHHHHHHHhchhHHHhhhcCCCcccchHHHHHhhhhcCCCCcHHHHHHHHHH
Q 037423 92 ALKKAKRVSATKGISNIAKRERNKA-AKQLDALMKELAVPLRDYVANFPNRKCLHPYERSLTELTLGDGNYEKVLKNVDA 170 (435)
Q Consensus 92 ~~~r~~~~~~~~~~~~~~~~~r~~~-~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~~l~e~~~~~~~y~~~L~~l~~ 170 (435)
...+.|.+++..+..++.+++|+++ .+||+.+.++|+.. +..+......|..++..+.+++...+.+-+++.+
T Consensus 293 e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e------~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~k 366 (906)
T KOG2004|consen 293 ELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIE------KDDKDALVEKFRERIKSLKMPDHVLKVIDEELTK 366 (906)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCC------ccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence 4556677788888889999999998 79999999999963 1221224678889999988888888888888887
Q ss_pred HhhhHH-----HHhhHHHH----Hhhcccc-----HHHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCccCCC
Q 037423 171 LRKKVV-----SAGKEHAS----LCAKSLS-----KREAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLE 236 (435)
Q Consensus 171 ~~~~i~-----~i~k~~~~----l~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~ 236 (435)
++.+.. .+..+|.+ ++|...+ ...|+..+.++++.+..+..+ ++|++ ..++|. -...
T Consensus 367 L~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeR-------ILEfi-AV~kLr-gs~q 437 (906)
T KOG2004|consen 367 LKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKER-------ILEFI-AVGKLR-GSVQ 437 (906)
T ss_pred HhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHH-------HHHHH-HHHhhc-ccCC
Confidence 766543 23444443 4676544 345778888888888888776 45543 233332 2347
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++.+|++|+|||||||+.+++++
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHH
Confidence 89999999999999999999874
No 316
>PRK12289 GTPase RsgA; Reviewed
Probab=98.83 E-value=1.9e-09 Score=108.48 Aligned_cols=81 Identities=25% Similarity=0.243 Sum_probs=60.4
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCc-------eeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPF-------TTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~-------tT~~~~~ 276 (435)
.+..+++..+.+++.|.+.+ .+..++++|++|||||||+|+|++.. ..++..++ ||++...
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L-----------~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l 219 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQL-----------RNKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL 219 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhh-----------ccceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE
Confidence 46677888899988877654 12358999999999999999999653 46666776 7888765
Q ss_pred EEEEeCCceEEEEeCCCCCCCCc
Q 037423 277 GHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
..+.-++ .++||||+.....
T Consensus 220 ~~l~~g~---~liDTPG~~~~~l 239 (352)
T PRK12289 220 FELPNGG---LLADTPGFNQPDL 239 (352)
T ss_pred EECCCCc---EEEeCCCcccccc
Confidence 5443222 7999999976543
No 317
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=1.4e-08 Score=99.94 Aligned_cols=91 Identities=25% Similarity=0.344 Sum_probs=65.3
Q ss_pred hHHHHhhcCCChhHHHHHHHHhccCC-------ccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEE
Q 037423 206 LEEVFNREGKAVDDLLNIAKTLRAMP-------VVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMG 277 (435)
Q Consensus 206 ~~~v~~~~~~~l~~L~~~~~~l~~lp-------~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~ 277 (435)
+..+++..+.++..|.+....+.... .......+++++|.|||||||++|+|.+... .+++.||+|++....
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 34566777778877776443221100 0123557899999999999999999998765 889999999997643
Q ss_pred EEEeCCceEEEEeCCCCCCCCc
Q 037423 278 HINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 278 ~~~~~~~~~~liDTpG~~~~~~ 299 (435)
.+ +..+.++||||+.....
T Consensus 163 ~~---~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 163 KL---GKGLELLDTPGILWPKL 181 (287)
T ss_pred Ee---CCcEEEEECCCcCCCCC
Confidence 33 34689999999976543
No 318
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.82 E-value=7.1e-09 Score=97.46 Aligned_cols=161 Identities=22% Similarity=0.279 Sum_probs=108.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.++.++|.|.+||||++..+++....+..+-|||.....+...+.+-++++.|.||+.+.....+..- ++. -+....+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg-~qv-iavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG-KQV-IAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc-cEE-EEEeecc
Confidence 47999999999999999999998888999999999999999999999999999999988755432210 011 1122234
Q ss_pred cEEEEEEeCCCCC--------------------------------CCC-------HHHHHHHHHHHHHh-----------
Q 037423 318 TAILFVHDLSGEC--------------------------------GTS-------PSDQFTIYKEIKER----------- 347 (435)
Q Consensus 318 d~il~ViD~s~~~--------------------------------g~s-------~~~~~~l~~~l~~~----------- 347 (435)
+++++|+|+-.+- |.+ .+.+..++.+.+..
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 5566666654210 000 11111122211111
Q ss_pred ---------cC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 348 ---------FS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 348 ---------~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++ -.|.+.++||+|-+.-++.. .+. .....+++||.++-|++++++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd-----------ii~-----~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD-----------IIY-----TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccc-----------eee-----eccceeecccccccchHHHHHHHhhcch
Confidence 11 36889999999987654221 010 1236899999999999999999998764
No 319
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.81 E-value=1.4e-08 Score=91.93 Aligned_cols=89 Identities=35% Similarity=0.428 Sum_probs=65.1
Q ss_pred chhHHHHhhcCCChhHHHHHHHHhc------cCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeE
Q 037423 204 QRLEEVFNREGKAVDDLLNIAKTLR------AMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILM 276 (435)
Q Consensus 204 ~~~~~v~~~~~~~l~~L~~~~~~l~------~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~ 276 (435)
..+..+++..+.+++.|.+.....- ......+..++++++|.+|+|||||+|.+.+... .++..+++|.+...
T Consensus 76 ~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~ 155 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW 155 (171)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE
Confidence 4455677888888888887543320 0011123457899999999999999999998664 67888899988776
Q ss_pred EEEEeCCceEEEEeCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLL 295 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~ 295 (435)
..+. ..+.++||||+.
T Consensus 156 ~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 156 IKIS---PGIYLLDTPGIL 171 (171)
T ss_pred EEec---CCEEEEECCCCC
Confidence 5543 568999999973
No 320
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.80 E-value=3.8e-08 Score=92.06 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=39.0
Q ss_pred CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 350 DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 350 ~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
+.|.++|+||+|+...... ........+... ....+++++||++|.|++++++++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~-----~~~~~~~~l~~~--~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGF-----DVEKMKADAKKI--NPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchh-----hHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999754211 011111112221 123689999999999999999999875
No 321
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.79 E-value=1.1e-07 Score=94.09 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=81.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccc----cCCc----eeeeeeEEEEEe--CC--ceEEEEeCCCCCCCCchh--
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVC----NYPF----TTRGILMGHINL--GY--QNFQITDTPGLLQRRDED-- 301 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~----~~~~----tT~~~~~~~~~~--~~--~~~~liDTpG~~~~~~~~-- 301 (435)
-.++|+++|..|.|||||+|.|++....-. +..+ .|..+......+ ++ .++.++||||+.+.....
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 357899999999999999999987532111 1111 222233222222 33 457899999998764331
Q ss_pred ----hhHHHHHHHHHHh-------c------CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 302 ----RNNLEKLTLAVLT-------H------LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 302 ----~~~ie~~~~~~l~-------~------~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
.+.++.+-..++. + .-|++||++-+++ .|....|.. .++.+.+ ...+|-|+.|+|...
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe-~Mk~ls~---~vNlIPVI~KaD~lT 176 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIE-AMKRLSK---RVNLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHH-HHHHHhc---ccCeeeeeeccccCC
Confidence 1233333222221 1 1278999999987 488888887 5666666 478899999999987
Q ss_pred CC
Q 037423 365 TS 366 (435)
Q Consensus 365 ~~ 366 (435)
.+
T Consensus 177 ~~ 178 (373)
T COG5019 177 DD 178 (373)
T ss_pred HH
Confidence 65
No 322
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.79 E-value=4.9e-08 Score=84.98 Aligned_cols=172 Identities=18% Similarity=0.158 Sum_probs=109.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|.++|++..|||||+-...+...........-.......+... +..+.+||..|..+... ++ ....
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n-------~l--Piac 90 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFIN-------ML--PIAC 90 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhc-------cC--ceee
Confidence 3579999999999999999988765421111111112222223333 35678999999864321 11 1111
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..+.+|+|++|.+.+ .+......|+...+......--|+|++|-|+.-.-+... .+ ........|++....+.+
T Consensus 91 ~dsvaIlFmFDLt~r--~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~-Q~---~I~~qar~YAk~mnAsL~ 164 (205)
T KOG1673|consen 91 KDSVAILFMFDLTRR--STLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPEL-QE---TISRQARKYAKVMNASLF 164 (205)
T ss_pred cCcEEEEEEEecCch--HHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHH-HH---HHHHHHHHHHHHhCCcEE
Confidence 223579999999954 567778889998888642222367999999753321110 11 111233456666677899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
++|+-...|+.++|..+...+-+..-.++
T Consensus 165 F~Sts~sINv~KIFK~vlAklFnL~~ti~ 193 (205)
T KOG1673|consen 165 FCSTSHSINVQKIFKIVLAKLFNLPWTIP 193 (205)
T ss_pred EeeccccccHHHHHHHHHHHHhCCceecc
Confidence 99999999999999999988876655444
No 323
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.77 E-value=2.3e-08 Score=97.75 Aligned_cols=90 Identities=29% Similarity=0.416 Sum_probs=64.6
Q ss_pred hHHHHhhcCCChhHHHHHHHHhccCC-------ccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEE
Q 037423 206 LEEVFNREGKAVDDLLNIAKTLRAMP-------VVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMG 277 (435)
Q Consensus 206 ~~~v~~~~~~~l~~L~~~~~~l~~lp-------~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~ 277 (435)
+..+++..+.++..|.+....+.... .......+++++|.||+|||||+|++.+.. ..+++.||+|+.....
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~ 159 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI 159 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEE
Confidence 44567777778888876543321100 011345789999999999999999999776 4788999999987654
Q ss_pred EEEeCCceEEEEeCCCCCCCC
Q 037423 278 HINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 278 ~~~~~~~~~~liDTpG~~~~~ 298 (435)
.+ +..+.++||||+....
T Consensus 160 ~~---~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 160 KL---SDGLELLDTPGILWPK 177 (276)
T ss_pred Ee---CCCEEEEECCCcccCC
Confidence 43 2368999999997654
No 324
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=3e-07 Score=91.61 Aligned_cols=125 Identities=22% Similarity=0.256 Sum_probs=81.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCc-------cccCCceeeeeeEEEEEe--CC--ceEEEEeCCCCCCCCch-----
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPE-------VCNYPFTTRGILMGHINL--GY--QNFQITDTPGLLQRRDE----- 300 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~-------v~~~~~tT~~~~~~~~~~--~~--~~~~liDTpG~~~~~~~----- 300 (435)
.++++++|..|.|||||+|+|+..... ....+..|..+....... +| .++.++||||+.+.-..
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 478999999999999999998865321 111222233333333333 33 46789999999876432
Q ss_pred -hhhHHHHHHHHHHhc------------CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 301 -DRNNLEKLTLAVLTH------------LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 301 -~~~~ie~~~~~~l~~------------~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
..+.++.+-..++.. .-|++||++.+++ .|....|.. ..+.+.. ..++|-|+.|.|.....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~-~Mk~l~~---~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIE-FMKKLSK---KVNLIPVIAKADTLTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHH-HHHHHhc---cccccceeeccccCCHH
Confidence 122333333333321 1278999999987 478888876 5555555 57889999999998775
No 325
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.72 E-value=7.3e-09 Score=99.50 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=56.7
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccC-------CceeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNY-------PFTTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~-------~~tT~~~~~ 276 (435)
.+..+++..+.++++|.+.+ ....++++|++|||||||+|.+.+... .+++. ..||++...
T Consensus 99 ~v~~~SAktg~gi~eLf~~l-----------~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l 167 (245)
T TIGR00157 99 QVLMTSSKNQDGLKELIEAL-----------QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL 167 (245)
T ss_pred eEEEEecCCchhHHHHHhhh-----------cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE
Confidence 46667888888887777643 135789999999999999999986532 33322 237887776
Q ss_pred EEEEeCCceEEEEeCCCCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~~~ 298 (435)
..+ ++ ..++||||+....
T Consensus 168 ~~l--~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 168 FHF--HG--GLIADTPGFNEFG 185 (245)
T ss_pred EEc--CC--cEEEeCCCccccC
Confidence 665 22 2799999997654
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=3.3e-08 Score=100.20 Aligned_cols=83 Identities=28% Similarity=0.442 Sum_probs=65.1
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC------CccccCCceeeeeeEEE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK------PEVCNYPFTTRGILMGH 278 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~------~~v~~~~~tT~~~~~~~ 278 (435)
.+..+++..+.++++|.+.+..++ .+..++++|.+|||||||+|++++.. +.++..|+||++.....
T Consensus 129 ~i~~vSAk~g~gv~eL~~~l~~~~-------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~ 201 (360)
T TIGR03597 129 DIILVSAKKGNGIDELLDKIKKAR-------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIP 201 (360)
T ss_pred cEEEecCCCCCCHHHHHHHHHHHh-------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEE
Confidence 456678889999998887654442 24789999999999999999998642 47889999999977554
Q ss_pred EEeCCceEEEEeCCCCCCC
Q 037423 279 INLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 279 ~~~~~~~~~liDTpG~~~~ 297 (435)
+ +..+.++||||+...
T Consensus 202 ~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 202 L---DDGHSLYDTPGIINS 217 (360)
T ss_pred e---CCCCEEEECCCCCCh
Confidence 3 234679999999764
No 327
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.72 E-value=8.8e-08 Score=89.14 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=59.3
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..+.+++|.|..-... + .. ...+.++.|+|+.+ +.+.... ....+ ...-++|+||+|+.
T Consensus 92 ~D~iiIEt~G~~l~~~-----~----~~---~l~~~~i~vvD~~~--~~~~~~~--~~~qi-----~~ad~~~~~k~d~~ 150 (199)
T TIGR00101 92 LEMVFIESGGDNLSAT-----F----SP---ELADLTIFVIDVAA--GDKIPRK--GGPGI-----TRSDLLVINKIDLA 150 (199)
T ss_pred CCEEEEECCCCCcccc-----c----ch---hhhCcEEEEEEcch--hhhhhhh--hHhHh-----hhccEEEEEhhhcc
Confidence 4667888888421110 0 01 11366899999873 2221110 01111 12337999999998
Q ss_pred CCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 364 QTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+.... +..........+ ....+++++||++|+|++++++++.+.+
T Consensus 151 ~~~~~-----~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 151 PMVGA-----DLGVMERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred ccccc-----cHHHHHHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 53110 111111222222 2346899999999999999999998764
No 328
>PRK13796 GTPase YqeH; Provisional
Probab=98.71 E-value=1.2e-08 Score=103.59 Aligned_cols=83 Identities=28% Similarity=0.419 Sum_probs=63.3
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCC------CCccccCCceeeeeeEEE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTG------KPEVCNYPFTTRGILMGH 278 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~------~~~v~~~~~tT~~~~~~~ 278 (435)
.+..+++..+.++++|.+.+..+. .+..+.++|.+|||||||+|+|++. ...++..||||++.....
T Consensus 135 ~v~~vSAk~g~gI~eL~~~I~~~~-------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~ 207 (365)
T PRK13796 135 DVVLISAQKGHGIDELLEAIEKYR-------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP 207 (365)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc-------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE
Confidence 455678888889988887654432 3568999999999999999999843 235789999999987655
Q ss_pred EEeCCceEEEEeCCCCCCC
Q 037423 279 INLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 279 ~~~~~~~~~liDTpG~~~~ 297 (435)
+. + ...++||||+...
T Consensus 208 l~--~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 208 LD--D-GSFLYDTPGIIHR 223 (365)
T ss_pred cC--C-CcEEEECCCcccc
Confidence 43 2 2479999999754
No 329
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.70 E-value=1.2e-08 Score=91.17 Aligned_cols=88 Identities=23% Similarity=0.255 Sum_probs=56.1
Q ss_pred HHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-C---ccccC----C
Q 037423 197 ERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-P---EVCNY----P 268 (435)
Q Consensus 197 ~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~---~v~~~----~ 268 (435)
+.+....+++..++...+.+++.|.+.. .+.+++++|++|||||||+|.|.+.. . .++.. .
T Consensus 6 ~~y~~~gy~v~~~S~~~~~g~~~l~~~l-----------~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGk 74 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGEGIEELKELL-----------KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGK 74 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTTTHHHHHHHH-----------TTSEEEEECSTTSSHHHHHHHHHTSS----S----------
T ss_pred HHHHHcCCcEEEEeCCCCcCHHHHHHHh-----------cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCc
Confidence 3444445567788888899999988865 34789999999999999999999763 2 22222 2
Q ss_pred ceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 269 FTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 269 ~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
.||+......+. ....+|||||+.+..
T Consensus 75 HTTt~~~l~~l~---~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 75 HTTTHRELFPLP---DGGYIIDTPGFRSFG 101 (161)
T ss_dssp ----SEEEEEET---TSEEEECSHHHHT--
T ss_pred ccCCCeeEEecC---CCcEEEECCCCCccc
Confidence 256655554442 234799999997654
No 330
>PRK12288 GTPase RsgA; Reviewed
Probab=98.70 E-value=9.8e-09 Score=103.28 Aligned_cols=80 Identities=25% Similarity=0.298 Sum_probs=59.1
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCc-------eeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPF-------TTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~-------tT~~~~~ 276 (435)
.+..+++..+.+++.|.+.+. ...++++|.+|||||||+|+|++.. ..++..+. ||+....
T Consensus 184 ~v~~vSA~tg~GideL~~~L~-----------~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l 252 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALT-----------GRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL 252 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHh-----------hCCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE
Confidence 566788888999988887552 2358999999999999999999764 34555443 6777666
Q ss_pred EEEEeCCceEEEEeCCCCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~~~ 298 (435)
..+..++ .++||||+....
T Consensus 253 ~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 253 YHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEecCCC---EEEECCCCCccc
Confidence 6654333 599999997654
No 331
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.5e-07 Score=102.06 Aligned_cols=116 Identities=19% Similarity=0.094 Sum_probs=84.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC------------------ccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP------------------EVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQ 296 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~------------------~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~ 296 (435)
+.+.++++|+..+|||||..+++-..- ......|.|.......+.+.+ ..+.+|||||+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 457899999999999999999872110 111223556666667778885 9999999999998
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
...+. ..+++-+ |++++|+|+. .|...+....|.+ +.+. +.|.++++||+|....
T Consensus 89 Ft~EV--------~rslrvl-DgavvVvdav--eGV~~QTEtv~rq-a~~~--~vp~i~fiNKmDR~~a 143 (697)
T COG0480 89 FTIEV--------ERSLRVL-DGAVVVVDAV--EGVEPQTETVWRQ-ADKY--GVPRILFVNKMDRLGA 143 (697)
T ss_pred cHHHH--------HHHHHhh-cceEEEEECC--CCeeecHHHHHHH-Hhhc--CCCeEEEEECcccccc
Confidence 75432 2333333 8899999998 6788887775544 4443 7999999999997654
No 332
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.65 E-value=1.1e-07 Score=105.72 Aligned_cols=153 Identities=27% Similarity=0.335 Sum_probs=100.6
Q ss_pred HHHhhhhhhcccccchhHHHHHHHH-HHHHHHHHHHhchhHHHhhhcCCCcccchHHHHHhhhhcCCCCcHHHHHHHHHH
Q 037423 92 ALKKAKRVSATKGISNIAKRERNKA-AKQLDALMKELAVPLRDYVANFPNRKCLHPYERSLTELTLGDGNYEKVLKNVDA 170 (435)
Q Consensus 92 ~~~r~~~~~~~~~~~~~~~~~r~~~-~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~~l~e~~~~~~~y~~~L~~l~~ 170 (435)
.+.+.++++..++.+++.+.||+|| ++||++++++|++ +..+.+++..|.+.+.+..++++..+.+..++++
T Consensus 203 e~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~-------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~ 275 (775)
T TIGR00763 203 ELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGI-------EKDDKDELEKLKEKLEELKLPEEVKKVIEKELTK 275 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4455778888899999999999999 7899999999996 2233467899999999999999999999999988
Q ss_pred HhhhHH-----HHhhHHHH----HhhccccH-----HHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCccCCC
Q 037423 171 LRKKVV-----SAGKEHAS----LCAKSLSK-----REAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLE 236 (435)
Q Consensus 171 ~~~~i~-----~i~k~~~~----l~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~ 236 (435)
++.... .+.+.|.+ ++|...+. ..+++.+...+..+..+..+ +.++....... ...+
T Consensus 276 ~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~-------i~~~~~~~~~~--~~~~ 346 (775)
T TIGR00763 276 LSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKER-------ILEYLAVQKLR--GKMK 346 (775)
T ss_pred HHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHH-------HHHHHHHHHhh--cCCC
Confidence 776432 22233333 34433221 12233333333223332222 22211111000 1235
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++.++++|+||+|||++++.+++.
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999999754
No 333
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.60 E-value=3e-06 Score=87.11 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=66.0
Q ss_pred CCEEEEecCCCCChhhHHHHhh------CCCC-ccccCCc-----------ee-eeeeEEE-EE----------------
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIS------TGKP-EVCNYPF-----------TT-RGILMGH-IN---------------- 280 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~------~~~~-~v~~~~~-----------tT-~~~~~~~-~~---------------- 280 (435)
...++++|.+|+||||++..|+ +.++ .++.-++ .. .+..... ..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999886 2222 1111000 00 1111010 00
Q ss_pred eCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Q 037423 281 LGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKC 360 (435)
Q Consensus 281 ~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~ 360 (435)
..+..++||||||..........++.... -...++.+++|+|++ .|....++ ...+.+. -.+--+|+||.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~---~~~~p~e~lLVlda~--~Gq~a~~~---a~~F~~~--~~~~g~IlTKl 249 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVA---EAIQPDNIIFVMDGS--IGQAAEAQ---AKAFKDS--VDVGSVIITKL 249 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHh---hhcCCcEEEEEeccc--cChhHHHH---HHHHHhc--cCCcEEEEECc
Confidence 02568899999997654332222222221 112357799999987 44444333 3333332 23556899999
Q ss_pred CCCCC
Q 037423 361 DLLQT 365 (435)
Q Consensus 361 Dl~~~ 365 (435)
|....
T Consensus 250 D~~ar 254 (429)
T TIGR01425 250 DGHAK 254 (429)
T ss_pred cCCCC
Confidence 97643
No 334
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.60 E-value=3.7e-06 Score=82.03 Aligned_cols=106 Identities=19% Similarity=0.139 Sum_probs=61.5
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHH---HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLA---VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVS 358 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~---~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~N 358 (435)
.+..++++||||..........++.++... .....++.+++|+|++ .+ .++.. ....+.+.. .+.-+|+|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~--~~--~~~~~-~~~~f~~~~--~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT--TG--QNALE-QAKVFNEAV--GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC--CC--HHHHH-HHHHHHhhC--CCCEEEEE
Confidence 356889999999976544333344443322 1233467899999987 33 33332 233333321 24568999
Q ss_pred ccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHH
Q 037423 359 KCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKD 409 (435)
Q Consensus 359 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~ 409 (435)
|+|....... ........+.|+.+++ +|++++++..
T Consensus 226 KlDe~~~~G~-------------~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 226 KLDGTAKGGI-------------ILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred ccCCCCCccH-------------HHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9998654321 1111112246888888 7888877653
No 335
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.58 E-value=6.8e-08 Score=93.98 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=63.3
Q ss_pred HHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-Cc---cccC----
Q 037423 196 EERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PE---VCNY---- 267 (435)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~---v~~~---- 267 (435)
...+....+.+..++...+.+++.|.+.. .+.+.+++|.+|||||||+|+|.... .. ++..
T Consensus 134 ~~~y~~~gy~v~~~s~~~~~~~~~l~~~l-----------~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rG 202 (301)
T COG1162 134 LREYEDIGYPVLFVSAKNGDGLEELAELL-----------AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRG 202 (301)
T ss_pred HHHHHhCCeeEEEecCcCcccHHHHHHHh-----------cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCC
Confidence 33444445567778888888888888754 35689999999999999999998642 22 2222
Q ss_pred CceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 268 PFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 268 ~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
..||+.....++..+| .++||||+....
T Consensus 203 kHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 203 RHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 2377777777775455 599999997654
No 336
>PRK00098 GTPase RsgA; Reviewed
Probab=98.58 E-value=5.1e-08 Score=96.37 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=55.3
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCc-------eeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPF-------TTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~-------tT~~~~~ 276 (435)
.+..+++..+.+++.|.+.+ .+..++++|++|+|||||+|+|++.. ..++..+. ||+....
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l-----------~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~ 211 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLL-----------AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL 211 (298)
T ss_pred eEEEEeCCCCccHHHHHhhc-----------cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE
Confidence 45667888888888877643 35689999999999999999998753 23333332 6666554
Q ss_pred EEEEeCCceEEEEeCCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLLQ 296 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~ 296 (435)
..+..+ ..++||||+..
T Consensus 212 ~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 212 YDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred EEcCCC---cEEEECCCcCc
Confidence 444322 37999999975
No 337
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.57 E-value=2.1e-07 Score=93.72 Aligned_cols=89 Identities=28% Similarity=0.272 Sum_probs=69.0
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCc-----------------eEEEEeCCCCCCCCc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQ-----------------NFQITDTPGLLQRRD 299 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~~ 299 (435)
.+++++|.||+|||||.|++++... .+++||+||.++..+.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5789999999999999999999988 8999999999999998887653 579999999987654
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCC
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSG 328 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~ 328 (435)
.... +-......++. .|++++|+|..+
T Consensus 83 ~g~G-lgn~fL~~ir~-~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEG-LGNQFLANIRE-VDIIQHVVRCFE 109 (368)
T ss_pred cccC-cchHHHHHHHh-CCEEEEEEeCCC
Confidence 3321 11112223333 489999999864
No 338
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.55 E-value=1.2e-07 Score=92.45 Aligned_cols=90 Identities=24% Similarity=0.394 Sum_probs=71.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-----------------ceEEEEeCCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-----------------QNFQITDTPGLLQRR 298 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~ 298 (435)
...++++||.||||||||.|.|+.......++||+|.++..+.+...+ ..+.+.|++|+....
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 457899999999999999999999888899999999999988877643 335899999998877
Q ss_pred chhhhHHHHHHHHHHhcC--CcEEEEEEeCCCC
Q 037423 299 DEDRNNLEKLTLAVLTHL--PTAILFVHDLSGE 329 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~--~d~il~ViD~s~~ 329 (435)
..... +...++.|. .|+++.|+++.+.
T Consensus 99 s~G~G----LGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 99 SAGEG----LGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred ccCcC----chHHHHHhhhhccceeEEEEecCc
Confidence 65433 344444433 3789999988763
No 339
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.2e-06 Score=84.19 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=96.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC-------C---------CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG-------K---------PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~-------~---------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+.-.|+.||+-+-|||||..+++.. . ..-....+.|.+.....++.+.++|-.+|.||+.+.-
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv- 89 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV- 89 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH-
Confidence 3456899999999999999988631 1 1111233567776666666678999999999996532
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
+|. +.-.... |..|+|+.++ +|.-.+...+++ +.+. .+.| +++++||+|+++..+..+..+....+
T Consensus 90 --KNM-----ItgAaqm-DgAILVVsA~--dGpmPqTrEHiL--larq-vGvp~ivvflnK~Dmvdd~ellelVemEvre 156 (394)
T COG0050 90 --KNM-----ITGAAQM-DGAILVVAAT--DGPMPQTREHIL--LARQ-VGVPYIVVFLNKVDMVDDEELLELVEMEVRE 156 (394)
T ss_pred --HHH-----hhhHHhc-CccEEEEEcC--CCCCCcchhhhh--hhhh-cCCcEEEEEEecccccCcHHHHHHHHHHHHH
Confidence 221 1111122 5667777776 333334333221 2222 2564 67889999999865433322222222
Q ss_pred HHHHHhhhhcCCCcEEEcccCCC-CCHHHHHHHHHHHHhcccccccCC
Q 037423 379 HLEMASYRKMGPDGAIRVSVMNE-EGLNELKDRVYQMLVGQMDRIKSR 425 (435)
Q Consensus 379 ~~~~~~~~~~~~~~~i~vSA~~g-~GI~eL~~~i~~~l~~~~~~~~t~ 425 (435)
+.....|. ....|++.-||+.. +|-.+..+.|.+++.....-+++.
T Consensus 157 LLs~y~f~-gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 157 LLSEYGFP-GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HHHHcCCC-CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 22222221 12357888887652 443334444444443333334443
No 340
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=3.5e-06 Score=78.76 Aligned_cols=125 Identities=22% Similarity=0.295 Sum_probs=77.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC--------ccccCCceeeeeeEEE-EEeCC--ceEEEEeCCCCCCCCchh--hh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP--------EVCNYPFTTRGILMGH-INLGY--QNFQITDTPGLLQRRDED--RN 303 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~--------~v~~~~~tT~~~~~~~-~~~~~--~~~~liDTpG~~~~~~~~--~~ 303 (435)
.+.|+++|.+|.||||++|.+..... ...++|.||.--...| +.-++ .++.++||||+.+....+ .+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 47899999999999999999875322 1113444443222333 33344 356899999998764321 11
Q ss_pred ----HHHHHHHHHH---------hcCC----cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 304 ----NLEKLTLAVL---------THLP----TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 304 ----~ie~~~~~~l---------~~~~----d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.+..+...++ ++.+ ++++|++.+++. ....-|.. .++.+.+. ..+|-|+-|.|...-+
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDie-flkrLt~v---vNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIE-FLKRLTEV---VNVVPVIAKADTLTLE 200 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHH-HHHHHhhh---heeeeeEeecccccHH
Confidence 1211111111 1222 689999999875 44555665 56666664 6788999999987654
No 341
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.53 E-value=5.8e-07 Score=79.91 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=56.2
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
+|++++|+|++. +...++. .+...+.. .++|+++|+||+|+.+.. .. .. ...+....+.+++++
T Consensus 13 aD~vl~V~D~~~--~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------~~-~~---~~~~~~~~~~~~~~i 76 (156)
T cd01859 13 SDVVLEVLDARD--PELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKE-------VL-EK---WKSIKESEGIPVVYV 76 (156)
T ss_pred CCEEEEEeeCCC--CcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHH-------HH-HH---HHHHHHhCCCcEEEE
Confidence 489999999874 3333332 23333333 268999999999986421 00 11 111112223578999
Q ss_pred ccCCCCCHHHHHHHHHHHHhc
Q 037423 397 SVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l~~ 417 (435)
||++|.|+++|++.+.+.+..
T Consensus 77 Sa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 77 SAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EccccccHHHHHHHHHHHHhh
Confidence 999999999999999988754
No 342
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.53 E-value=1.6e-07 Score=82.28 Aligned_cols=54 Identities=37% Similarity=0.509 Sum_probs=44.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLL 295 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~ 295 (435)
+++++|.+|+|||||+|++++... .++..+++|++.....+ ++ .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--TP-TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--CC-CEEEEECCCcC
Confidence 799999999999999999997765 67788888888664443 33 67999999985
No 343
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.53 E-value=5.2e-07 Score=88.04 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=37.7
Q ss_pred CcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 351 HIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 351 ~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.+-++|+||+|+..... .+.......+... ....+++++||++|+|+++|.++|.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~-----~dle~~~~~lr~l--np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLN-----FDVEKCIACAREV--NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccH-----HHHHHHHHHHHhh--CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46689999999975320 0111111112221 134689999999999999999999773
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=1.9e-06 Score=86.24 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=58.9
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+++|||||...........+..+.. .-.++.+++|+|++ .|....++ ...+.+. -..--+++||.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~---~~~pd~~iLVl~a~--~g~d~~~~---a~~f~~~--~~~~giIlTKlD~ 291 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVR---VTKPDLVIFVGDAL--AGNDAVEQ---AREFNEA--VGIDGVILTKVDA 291 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHH---hhCCceEEEeeccc--cchhHHHH---HHHHHhc--CCCCEEEEeeecC
Confidence 4568999999998654433333333321 11357789999987 34322222 2333221 1234589999998
Q ss_pred CCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKD 409 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~ 409 (435)
...... ........+.|+.+++ +|++++++..
T Consensus 292 ~~~~G~-------------~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGGA-------------ALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCccH-------------HHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 654321 1111112246888888 7999987754
No 345
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.51 E-value=8.9e-07 Score=83.95 Aligned_cols=90 Identities=21% Similarity=0.271 Sum_probs=64.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC--CCccc-cCCceeeeeeEEEEEe---CCceEEEEeCCCCCCCCchh-hhHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG--KPEVC-NYPFTTRGILMGHINL---GYQNFQITDTPGLLQRRDED-RNNLEKL 308 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~--~~~v~-~~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~~~~~~-~~~ie~~ 308 (435)
+-..|+++|++++|||+|+|.+++. .+.++ ....+|+++....... .+..+.++||||+.+..... ......+
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 4457899999999999999999988 66443 3467888887776665 35789999999998765433 3333334
Q ss_pred HHHHHhcCCcEEEEEEeCC
Q 037423 309 TLAVLTHLPTAILFVHDLS 327 (435)
Q Consensus 309 ~~~~l~~~~d~il~ViD~s 327 (435)
+...+ +.++++|.++..
T Consensus 86 ~l~~l--lss~~i~n~~~~ 102 (224)
T cd01851 86 ALATL--LSSVLIYNSWET 102 (224)
T ss_pred HHHHH--HhCEEEEeccCc
Confidence 44333 357788888865
No 346
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.50 E-value=1.5e-08 Score=90.75 Aligned_cols=171 Identities=13% Similarity=0.147 Sum_probs=108.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC---ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY---QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
..+++.++|.-|+|||+++.+.....+.....+..-.++......+++ .++++||.+|+...... ...
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m---------trV 94 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM---------TRV 94 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce---------EEE
Confidence 346789999999999999998875443221111112233333333443 46789999999754321 122
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK 387 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
+...+++..+|+|++. ..+++....|.+.+-... ...|+|+..||||.-+.... ..-..+.++.+
T Consensus 95 yykea~~~~iVfdvt~--s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~--------~~~~~~d~f~k 164 (229)
T KOG4423|consen 95 YYKEAHGAFIVFDVTR--SLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN--------EATRQFDNFKK 164 (229)
T ss_pred EecCCcceEEEEEccc--cccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhh--------hhHHHHHHHHh
Confidence 2334577889999994 466776666777765432 23678999999998654311 11122333333
Q ss_pred -cCCCcEEEcccCCCCCHHHHHHHHHHHHhccc-ccccCC
Q 037423 388 -MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM-DRIKSR 425 (435)
Q Consensus 388 -~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~-~~~~t~ 425 (435)
.+....+++|+|.+.+++|..+.+.+.+.... .-+++.
T Consensus 165 engf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~ 204 (229)
T KOG4423|consen 165 ENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQPIKSS 204 (229)
T ss_pred ccCccceeeeccccccChhHHHHHHHHHHHhhccCCcccc
Confidence 33457899999999999999999999876555 334443
No 347
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=7.2e-07 Score=78.73 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=97.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..++++.|--|+|||||++.|-.++..+ .. .|..+....+.+++.+++.+|..|+... ....+.+-
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~q-hv--PTlHPTSE~l~Ig~m~ftt~DLGGH~qA---------rr~wkdyf 85 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HV--PTLHPTSEELSIGGMTFTTFDLGGHLQA---------RRVWKDYF 85 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccc-cC--CCcCCChHHheecCceEEEEccccHHHH---------HHHHHHHH
Confidence 356789999999999999999886655421 22 2444445556678889999999998431 11222222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHH--HhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc----
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIK--ERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM---- 388 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~--~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---- 388 (435)
...++++|++|+-+.+.+.. ...-++.+. +...+.|+++.+||+|..... .++.......+.++...
T Consensus 86 ~~v~~iv~lvda~d~er~~e--s~~eld~ll~~e~la~vp~lilgnKId~p~a~-----se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAE--SKKELDALLSDESLATVPFLILGNKIDIPYAA-----SEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred hhhceeEeeeehhhHHHhHH--HHHHHHHHHhHHHHhcCcceeecccccCCCcc-----cHHHHHHHHHHHHHhcccccc
Confidence 33488999999985433222 111112211 112578999999999987654 12222222333333221
Q ss_pred -------CCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 389 -------GPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 389 -------~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
....++.||...+.|.-+-+.++...
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 11246788888888877766666543
No 348
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.50 E-value=2.9e-07 Score=81.84 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=60.9
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCC
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGY 283 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~ 283 (435)
.+..+++..+.+++.|.+....+- | ......+++++|.+|+||||++|++.+.. ..+++.+++|....... . +
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~--~-~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~--~-~ 145 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELA--K-IDGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVK--I-T 145 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHH--h-hcCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEE--c-C
Confidence 355678888889988888654332 2 12356788999999999999999998654 35677788877654322 2 3
Q ss_pred ceEEEEeCCCC
Q 037423 284 QNFQITDTPGL 294 (435)
Q Consensus 284 ~~~~liDTpG~ 294 (435)
..+.+|||||+
T Consensus 146 ~~~~~~DtpGi 156 (156)
T cd01859 146 SKIYLLDTPGV 156 (156)
T ss_pred CCEEEEECcCC
Confidence 46899999996
No 349
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=1.8e-05 Score=86.47 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=78.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCcc-c--cCCceeeeee------------------EEEE-----------EeCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEV-C--NYPFTTRGIL------------------MGHI-----------NLGY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v-~--~~~~tT~~~~------------------~~~~-----------~~~~ 283 (435)
.+..++++|++|+||||++..|+..-... . .....+.|.. .... ...+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 35688999999999999999887421000 0 0000000000 0000 1135
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..++||||||........ ++.+..-.-...++-+++|+|++. ..++...+.+.+.....-.+-=+|+||.|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l---~eel~~l~~~~~p~e~~LVLsAt~----~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNV---SEQIAMLCGVGRPVRRLLLLNAAS----HGDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHH---HHHHHHHhccCCCCeEEEEECCCC----cHHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 678999999987654322 222221111223456899999873 2344433333333210001234789999976
Q ss_pred CCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCH-HHHH
Q 037423 364 QTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGL-NELK 408 (435)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI-~eL~ 408 (435)
..-. .+..+....+.|+.+++ +|++| +++.
T Consensus 337 ~~~G-------------~iL~i~~~~~lPI~yit--~GQ~VPdDL~ 367 (767)
T PRK14723 337 THLG-------------PALDTVIRHRLPVHYVS--TGQKVPEHLE 367 (767)
T ss_pred CCcc-------------HHHHHHHHHCCCeEEEe--cCCCChhhcc
Confidence 5431 12222222345777776 47777 4443
No 350
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=1.2e-06 Score=86.44 Aligned_cols=127 Identities=22% Similarity=0.263 Sum_probs=78.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEEEEe-----------C-------------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGHINL-----------G------------------- 282 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~~~~-----------~------------------- 282 (435)
..|-|.++|.-+.||||+++.|+..+. .+++.|.|......-+-+. +
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 568899999999999999999997654 3444433322221111000 0
Q ss_pred ---------CceEEEEeCCCCCCCCch--hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 037423 283 ---------YQNFQITDTPGLLQRRDE--DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDH 351 (435)
Q Consensus 283 ---------~~~~~liDTpG~~~~~~~--~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~ 351 (435)
-.++.+|||||+...... .|..=..-...+....+|.|++++|+.. -..+.+- ...+..++.. .-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK-LDIsdEf-~~vi~aLkG~--Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK-LDISDEF-KRVIDALKGH--ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh-ccccHHH-HHHHHHhhCC--cc
Confidence 134589999999876433 1111111234455555699999999863 2333333 3366666664 45
Q ss_pred cEEEEEeccCCCCCC
Q 037423 352 IWLDVVSKCDLLQTS 366 (435)
Q Consensus 352 piIvV~NK~Dl~~~~ 366 (435)
.+-+|+||.|.++.+
T Consensus 213 kiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQ 227 (532)
T ss_pred eeEEEeccccccCHH
Confidence 688999999998765
No 351
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.44 E-value=8e-06 Score=80.34 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=91.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC------CCCcccc-C------------Cc--eeeeeeEEE-------EEe------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST------GKPEVCN-Y------------PF--TTRGILMGH-------INL------ 281 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~------~~~~v~~-~------------~~--tT~~~~~~~-------~~~------ 281 (435)
+...++++|-+|+||||.+-.|+. .++.... - .+ .-.+++.+. +-+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 456789999999999999988862 1110000 0 00 001111111 001
Q ss_pred --CCceEEEEeCCCCCCCCchhhhHHHHHHHHH---HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 037423 282 --GYQNFQITDTPGLLQRRDEDRNNLEKLTLAV---LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDV 356 (435)
Q Consensus 282 --~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~---l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV 356 (435)
.+..++++||+|.+......++++++...-. ....++-+++++|++ .|...-.|...|.+.... .+ ++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt--tGqnal~QAk~F~eav~l-~G----iI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT--TGQNALSQAKIFNEAVGL-DG----II 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc--cChhHHHHHHHHHHhcCC-ce----EE
Confidence 2678899999999988777777777765433 333456689999998 666667776677666554 22 78
Q ss_pred EeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHH
Q 037423 357 VSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKD 409 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~ 409 (435)
+||+|-....... ..+....+.|+.++-. |+++++|..
T Consensus 291 lTKlDgtAKGG~i-------------l~I~~~l~~PI~fiGv--GE~~~DL~~ 328 (340)
T COG0552 291 LTKLDGTAKGGII-------------LSIAYELGIPIKFIGV--GEGYDDLRP 328 (340)
T ss_pred EEecccCCCccee-------------eeHHHHhCCCEEEEeC--CCChhhccc
Confidence 9999954332221 1111112356766643 778887754
No 352
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.42 E-value=5e-07 Score=82.27 Aligned_cols=57 Identities=19% Similarity=0.070 Sum_probs=37.9
Q ss_pred cEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 352 IWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 352 piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.=++|+||.|+...-.... +...++ ..+ -.+..|++++|+++|+|++++++++....
T Consensus 144 aDllVInK~DLa~~v~~dl--evm~~d---a~~--~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADL--EVMARD---AKE--VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccH--HHHHHH---HHH--hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 3479999999987643210 111111 111 12446899999999999999999987643
No 353
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.41 E-value=1e-05 Score=81.98 Aligned_cols=121 Identities=22% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC------CC-ccc--cCC-c------e---eeeeeEEEEE--------------eC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG------KP-EVC--NYP-F------T---TRGILMGHIN--------------LG 282 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~------~~-~v~--~~~-~------t---T~~~~~~~~~--------------~~ 282 (435)
....++++|++|+||||++..|+.. ++ .+. .+. + + ..++...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3568999999999999999998631 11 000 000 0 0 0010000000 01
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..++||||||........ ++.+....-...++.+++|+|++. ...+...+...+... ..-=+++||.|-
T Consensus 320 ~~DvVLIDTaGRs~kd~~l---m~EL~~~lk~~~PdevlLVLsATt----k~~d~~~i~~~F~~~---~idglI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASET---VEEMIETMGQVEPDYICLTLSASM----KSKDMIEIITNFKDI---HIDGIVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHH---HHHHHHHHhhcCCCeEEEEECCcc----ChHHHHHHHHHhcCC---CCCEEEEEcccC
Confidence 3578999999997654332 333322111233567889999862 234444444444432 123489999997
Q ss_pred CCCC
Q 037423 363 LQTS 366 (435)
Q Consensus 363 ~~~~ 366 (435)
....
T Consensus 390 T~k~ 393 (436)
T PRK11889 390 TASS 393 (436)
T ss_pred CCCc
Confidence 6543
No 354
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.37 E-value=5.6e-07 Score=88.50 Aligned_cols=79 Identities=25% Similarity=0.272 Sum_probs=54.8
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-cccc-------CCceeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCN-------YPFTTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~-------~~~tT~~~~~ 276 (435)
.+..+++..+.+++.|.+.+ .+..++++|++|+|||||+|.|++... .++. -..||++...
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L-----------~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~ 208 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYL-----------KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL 208 (287)
T ss_pred eEEEEECCCCccHHHHHhhh-----------ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE
Confidence 55667888888888877643 136799999999999999999987532 2221 2236666655
Q ss_pred EEEEeCCceEEEEeCCCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~~ 297 (435)
..+..+ ..++||||+.+.
T Consensus 209 ~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 209 FPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred EEcCCC---CEEEECCCCCcc
Confidence 444322 269999999653
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.37 E-value=2.3e-06 Score=76.31 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=56.2
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
+|++++|+|++.. ....+. .+...+.....++|+++|+||+|+.+.. +. ......+.+.....++++
T Consensus 9 aD~il~VvD~~~p--~~~~~~-~i~~~l~~~~~~~p~ilVlNKiDl~~~~-------~~---~~~~~~~~~~~~~~~~~i 75 (157)
T cd01858 9 SDVVIQVLDARDP--MGTRCK-HVEEYLKKEKPHKHLIFVLNKCDLVPTW-------VT---ARWVKILSKEYPTIAFHA 75 (157)
T ss_pred CCEEEEEEECCCC--ccccCH-HHHHHHHhccCCCCEEEEEEchhcCCHH-------HH---HHHHHHHhcCCcEEEEEe
Confidence 4899999999843 322222 2444454432358999999999997432 11 112222222222235889
Q ss_pred ccCCCCCHHHHHHHHHHHHh
Q 037423 397 SVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l~ 416 (435)
||+++.|+++|++.+.+.+.
T Consensus 76 Sa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred eccccccHHHHHHHHHHHHh
Confidence 99999999999999988754
No 356
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.34 E-value=4.8e-06 Score=82.61 Aligned_cols=168 Identities=19% Similarity=0.151 Sum_probs=97.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCcccc--------------CCceeeeeeEEEEEeC------------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCN--------------YPFTTRGILMGHINLG------------------ 282 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~--------------~~~tT~~~~~~~~~~~------------------ 282 (435)
+....|+..|+-+.|||||+-+|...+..-.+ ..+.|.++....+.++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 35567899999999999999988743321000 1233444444444443
Q ss_pred -----CceEEEEeCCCCCCCCchhhhHHHHHHHH-HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 037423 283 -----YQNFQITDTPGLLQRRDEDRNNLEKLTLA-VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDV 356 (435)
Q Consensus 283 -----~~~~~liDTpG~~~~~~~~~~~ie~~~~~-~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV 356 (435)
+.-+.++||-|+... -.-++. .+....|-.++++-++ +|.+.....++-- +.. ...|+|+|
T Consensus 195 vv~~aDklVsfVDtvGHEpw--------LrTtirGL~gqk~dYglLvVaAd--dG~~~~tkEHLgi-~~a--~~lPviVv 261 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPW--------LRTTIRGLLGQKVDYGLLVVAAD--DGVTKMTKEHLGI-ALA--MELPVIVV 261 (527)
T ss_pred hhhhcccEEEEEecCCccHH--------HHHHHHHHhccccceEEEEEEcc--CCcchhhhHhhhh-hhh--hcCCEEEE
Confidence 233578999998532 122222 2333357789999887 5666555543322 222 26899999
Q ss_pred EeccCCCCCCCccccchhhhHHHHHH-----------------Hhh-hhcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 357 VSKCDLLQTSPVAYVTEDEDSEHLEM-----------------ASY-RKMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+||+|+.+.+......++....+... ... ......|+|.+|+.+|+|++-|.+ +...++
T Consensus 262 vTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp 338 (527)
T COG5258 262 VTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLP 338 (527)
T ss_pred EEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCC
Confidence 99999997653332222221111110 000 122246899999999999975544 444443
No 357
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=2.8e-05 Score=80.00 Aligned_cols=145 Identities=15% Similarity=0.117 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC------Cccc----c-CC-c---------eeeeeeEE-----------EEEeC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK------PEVC----N-YP-F---------TTRGILMG-----------HINLG 282 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~------~~v~----~-~~-~---------tT~~~~~~-----------~~~~~ 282 (435)
..+..++++|++|+||||++..|++.. ..+. + +. + .-.++... .....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 356789999999999999999776421 0000 0 00 0 00000000 01123
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+++|||+|...+.......+..+. ....+.-+++|+|++. ..++...+....... ..-=+++||.|-
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~---~~~~~~~~~LVl~at~----~~~~~~~~~~~f~~~---~~~~~I~TKlDE 338 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLS---QCGTQVKHLLLLNATS----SGDTLDEVISAYQGH---GIHGCIITKVDE 338 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHh---ccCCCceEEEEEcCCC----CHHHHHHHHHHhcCC---CCCEEEEEeeeC
Confidence 567899999998765432222222221 1112345789999873 244444444443332 123479999997
Q ss_pred CCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGL 404 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI 404 (435)
...-. .+..+......|+.+++ +|++|
T Consensus 339 t~~~G-------------~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 339 AASLG-------------IALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred CCCcc-------------HHHHHHHHhCCCEEEEE--CCCCc
Confidence 65431 12222223345777776 46666
No 358
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.33 E-value=3.9e-05 Score=80.16 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=74.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC------Cccc----cCCc-----------eeeeeeEE-----------EEEeCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK------PEVC----NYPF-----------TTRGILMG-----------HINLGY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~------~~v~----~~~~-----------tT~~~~~~-----------~~~~~~ 283 (435)
.+..++++|++|+||||++..|+..- ..+. +... .-.+.... .....+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 45689999999999999999887321 0111 0000 00000000 011234
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL--PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
..+++|||+|...+.... .+. ...+... +.-.++|+|++.. ..+........... ..--+|+||+|
T Consensus 335 ~d~VLIDTaGr~~~d~~~---~e~--~~~l~~~~~p~e~~LVLdAt~~----~~~l~~i~~~f~~~---~~~g~IlTKlD 402 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMV---SEQ--IAMLHGAGAPVKRLLLLNATSH----GDTLNEVVQAYRGP---GLAGCILTKLD 402 (484)
T ss_pred CCeEEeCCCCcChhhHHH---HHH--HHHHhccCCCCeeEEEEeCCCc----HHHHHHHHHHhccC---CCCEEEEeCCC
Confidence 578999999986543211 111 1122221 2337888998732 33333333333332 23347899999
Q ss_pred CCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCH-HHHH
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGL-NELK 408 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI-~eL~ 408 (435)
-.... -.+..+......|+.+++ +|++| ++|.
T Consensus 403 et~~~-------------G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~ 435 (484)
T PRK06995 403 EAASL-------------GGALDVVIRYKLPLHYVS--NGQRVPEDLH 435 (484)
T ss_pred Ccccc-------------hHHHHHHHHHCCCeEEEe--cCCCChhhhc
Confidence 76543 122222222345777776 47777 4443
No 359
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=2e-06 Score=88.56 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=87.5
Q ss_pred CCccCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEE---eCCceEEEEeCCCCCCCCchhhhHHH
Q 037423 230 MPVVDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHIN---LGYQNFQITDTPGLLQRRDEDRNNLE 306 (435)
Q Consensus 230 lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~---~~~~~~~liDTpG~~~~~~~~~~~ie 306 (435)
.|.-.++.+.++++|+||+|||||+.+|.+.-. ..|.+-+.+.++ -..+++.++.+|.-..
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~t------k~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~---------- 125 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFT------KQTIDEIRGPITVVSGKTRRITFLECPSDLH---------- 125 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHHH------HhhhhccCCceEEeecceeEEEEEeChHHHH----------
Confidence 344457778889999999999999999875311 112222222222 2346788999984321
Q ss_pred HHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHHHHHHHhh
Q 037423 307 KLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY 385 (435)
Q Consensus 307 ~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 385 (435)
..-.+...+|+|++++|.. +|+..+... ++..+... +.| ++-|++..|+........... ......-|
T Consensus 126 --~miDvaKIaDLVlLlIdgn--fGfEMETmE-FLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~K----KrlkhRfW 194 (1077)
T COG5192 126 --QMIDVAKIADLVLLLIDGN--FGFEMETME-FLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIK----KRLKHRFW 194 (1077)
T ss_pred --HHHhHHHhhheeEEEeccc--cCceehHHH-HHHHHhhc--CCCceEEEEeecccccChHHHHHHH----HHHhhhHH
Confidence 1223344568899999987 898887776 56666665 555 566999999987653221111 11112223
Q ss_pred hhc-CCCcEEEcccCC
Q 037423 386 RKM-GPDGAIRVSVMN 400 (435)
Q Consensus 386 ~~~-~~~~~i~vSA~~ 400 (435)
.+. .+...|.+|...
T Consensus 195 tEiyqGaKlFylsgV~ 210 (1077)
T COG5192 195 TEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHcCCceEEEecccc
Confidence 322 245788888543
No 360
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.31 E-value=5.1e-06 Score=76.37 Aligned_cols=91 Identities=18% Similarity=0.104 Sum_probs=54.3
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHH-HH-HhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHL-EM-ASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 392 (435)
..+|++++|+|+++... .... .+.....++|+++|+||+|+....... ....... .. .........+
T Consensus 33 ~~ad~il~VvD~~~~~~--~~~~-----~l~~~~~~~~~ilV~NK~Dl~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 101 (190)
T cd01855 33 PKKALVVHVVDIFDFPG--SLIP-----RLRLFGGNNPVILVGNKIDLLPKDKNL----VRIKNWLRAKAAAGLGLKPKD 101 (190)
T ss_pred cCCcEEEEEEECccCCC--ccch-----hHHHhcCCCcEEEEEEchhcCCCCCCH----HHHHHHHHHHHHhhcCCCccc
Confidence 33489999999985321 1111 111122468999999999997543111 0000000 00 0111111236
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHh
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++++||++|.|+++|++.+.+.+.
T Consensus 102 i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 102 VILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 899999999999999999998774
No 361
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.29 E-value=4.6e-06 Score=80.14 Aligned_cols=84 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|.+++|+|++++ ..+......|+..+.. .+.|+++|+||+||.+.... . ......+.. .+.+++++
T Consensus 37 ~D~viiV~d~~~p-~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~-------~--~~~~~~~~~-~g~~v~~~ 103 (245)
T TIGR00157 37 IDQIVIVSSAVLP-ELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDM-------E--KEQLDIYRN-IGYQVLMT 103 (245)
T ss_pred CCEEEEEEECCCC-CCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHH-------H--HHHHHHHHH-CCCeEEEE
Confidence 3889999999853 3467777777776654 47999999999999753311 0 111222322 34579999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~ 413 (435)
||++|.|++++++.+..
T Consensus 104 SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 104 SSKNQDGLKELIEALQN 120 (245)
T ss_pred ecCCchhHHHHHhhhcC
Confidence 99999999999988763
No 362
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=2.2e-06 Score=82.50 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=73.6
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEEeCCCCCCC--CHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL--PTAILFVHDLSGECGT--SPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~--~d~il~ViD~s~~~g~--s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
+++.++|.||+.- +....+... -|++++++-+++.|+. +.+.+. .-++..+ +.++++-||
T Consensus 125 RHVSfVDCPGHDi-----------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLa--aveiM~L---khiiilQNK 188 (466)
T KOG0466|consen 125 RHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLA--AVEIMKL---KHIIILQNK 188 (466)
T ss_pred EEEEeccCCchHH-----------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHH--HHHHhhh---ceEEEEech
Confidence 4568999999831 111222211 2678888888887764 223322 2234443 789999999
Q ss_pred cCCCCCCCccccchhhhHHHHHHHhhh---hcCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 360 CDLLQTSPVAYVTEDEDSEHLEMASYR---KMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+||+.++.. .+..+.+..|. ...+.|++++||.-+.||+-+.+.|.+.++.-.
T Consensus 189 iDli~e~~A-------~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 189 IDLIKESQA-------LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred hhhhhHHHH-------HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 999987522 22223334443 334579999999999999999999999876543
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.26 E-value=3.4e-06 Score=75.08 Aligned_cols=83 Identities=22% Similarity=0.185 Sum_probs=53.4
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHH-HHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIY-KEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~-~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
|++++|+|++.. .+..+.. +. ..+.. .++|+|+|+||+|+..... . ......+......+++.+
T Consensus 1 Dvvl~VvD~~~p--~~~~~~~-i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-------~---~~~~~~~~~~~~~~ii~v 65 (155)
T cd01849 1 DVILEVLDARDP--LGTRSPD-IERVLIKE--KGKKLILVLNKADLVPKEV-------L---RKWLAYLRHSYPTIPFKI 65 (155)
T ss_pred CEEEEEEeccCC--ccccCHH-HHHHHHhc--CCCCEEEEEechhcCCHHH-------H---HHHHHHHHhhCCceEEEE
Confidence 679999999743 3333322 22 23333 3799999999999964320 0 011112222223568999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l 415 (435)
||++|.|+++|++.+.+.+
T Consensus 66 Sa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 66 SATNGQGIEKKESAFTKQT 84 (155)
T ss_pred eccCCcChhhHHHHHHHHh
Confidence 9999999999999997754
No 364
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.22 E-value=3.9e-06 Score=81.40 Aligned_cols=67 Identities=30% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC------CCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST------GKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED 301 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~------~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~ 301 (435)
+....+.++|.||+|||||+|++.. ....++..||.|+.+.....-.+...++++||||+....-.+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 4678899999999999999998763 234789999999988765444456779999999998764433
No 365
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=6.2e-06 Score=86.52 Aligned_cols=114 Identities=24% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc------cc--cC---------CceeeeeeEEEEEe---CC--ceEEEEeCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE------VC--NY---------PFTTRGILMGHINL---GY--QNFQITDTPG 293 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~------v~--~~---------~~tT~~~~~~~~~~---~~--~~~~liDTpG 293 (435)
.-..|+++|+-..|||+|+..|...... -. .| .+.+.......+-. .+ .-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4467899999999999999998754210 00 01 11111111111111 22 3468999999
Q ss_pred CCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 294 LLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 294 ~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
+.+...+ +...++- .|++++|+|+. +|........+-..+++ +.|+++|+||+|..
T Consensus 207 HVnF~DE--------~ta~l~~-sDgvVlvvDv~--EGVmlntEr~ikhaiq~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDE--------TTASLRL-SDGVVLVVDVA--EGVMLNTERIIKHAIQN---RLPIVVVINKVDRL 262 (971)
T ss_pred cccchHH--------HHHHhhh-cceEEEEEEcc--cCceeeHHHHHHHHHhc---cCcEEEEEehhHHH
Confidence 9876432 2333333 48899999998 67777766534444444 68999999999965
No 366
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.20 E-value=8.2e-05 Score=75.20 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=75.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC------CC-ccccCCce------------eeeeeEEEE-E-------------eC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG------KP-EVCNYPFT------------TRGILMGHI-N-------------LG 282 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~------~~-~v~~~~~t------------T~~~~~~~~-~-------------~~ 282 (435)
++..++++|++|+||||++..++.. ++ .+..-++. ..++..... + ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 4677899999999999999988631 11 01000000 001100000 0 02
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..++||||||..........++..+.. ...++.+++|++++ ....+...++...... .+--+|+||.|-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~---~~~p~~~~LVLsag----~~~~d~~~i~~~f~~l---~i~glI~TKLDE 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTD---VVHPDLTCFTFSSG----MKSADVMTILPKLAEI---PIDGFIITKMDE 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhh---ccCCceEEEECCCc----ccHHHHHHHHHhcCcC---CCCEEEEEcccC
Confidence 4688999999997644332222222211 11235667777653 3455554444333221 233578999997
Q ss_pred CCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~e 406 (435)
...- -.+.+.....+.|+.++|. |++|.+
T Consensus 355 T~~~-------------G~~Lsv~~~tglPIsylt~--GQ~Vpd 383 (407)
T PRK12726 355 TTRI-------------GDLYTVMQETNLPVLYMTD--GQNITE 383 (407)
T ss_pred CCCc-------------cHHHHHHHHHCCCEEEEec--CCCCCc
Confidence 6443 1222233333457777764 666654
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.20 E-value=1.4e-06 Score=92.11 Aligned_cols=48 Identities=33% Similarity=0.602 Sum_probs=43.6
Q ss_pred HHHHHHHhchh----HHHhhhcCC--------CcccchHHHHHhhhhcCC-----CCcHHHHHHH
Q 037423 120 LDALMKELAVP----LRDYVANFP--------NRKCLHPYERSLTELTLG-----DGNYEKVLKN 167 (435)
Q Consensus 120 l~~~~~~L~~~----L~~~l~~fp--------~~~~L~~f~~~l~e~~~~-----~~~y~~~L~~ 167 (435)
||+|+|||+.. |++||.+|+ |+++|+..+..++++..+ .++|..++++
T Consensus 177 LDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 177 LDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred EcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHHHHHH
Confidence 89999999987 999999999 789999999999999987 6788888876
No 368
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.19 E-value=5.4e-05 Score=78.46 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..++|+||||.........+++..+ ..+. .++.+++|+|++. + ++.......+.+.. ...-+|+||+|..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l--~~~~-~pdevlLVvda~~--g---q~av~~a~~F~~~l--~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEI--KEAV-KPDEVLLVIDATI--G---QQAKNQAKAFHEAV--GIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHH--HHHh-cccceeEEEeccc--c---HHHHHHHHHHHhcC--CCCEEEEecccCC
Confidence 4789999999876543222222222 1122 3577999999873 3 23222333333221 1235789999975
Q ss_pred CC
Q 037423 364 QT 365 (435)
Q Consensus 364 ~~ 365 (435)
..
T Consensus 246 a~ 247 (437)
T PRK00771 246 AK 247 (437)
T ss_pred Cc
Confidence 44
No 369
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.18 E-value=3.7e-05 Score=74.89 Aligned_cols=174 Identities=16% Similarity=0.096 Sum_probs=98.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC----CceEEEEeCCCCCCCCchhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG----YQNFQITDTPGLLQRRDEDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~----~~~~~liDTpG~~~~~~~~~~~ie~~~~ 310 (435)
+.+..|.++|..++|||||+..|-+.+- ..++.-.+....++.-+ -.++.+|=.-|-.-. ..+-++++
T Consensus 50 psgk~VlvlGdn~sGKtsLi~klqg~e~---~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h-----~~LLk~al 121 (473)
T KOG3905|consen 50 PSGKNVLVLGDNGSGKTSLISKLQGSET---VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYH-----KGLLKFAL 121 (473)
T ss_pred CCCCeEEEEccCCCchhHHHHHhhcccc---cCCCCCcceEEEecccccchhhhhcceEEecCchhh-----hhHHhhcc
Confidence 3678999999999999999999976541 12222222222222111 123444444443211 11223333
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCH-HHHHHHHHHHHHh------------------------------------------
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSP-SDQFTIYKEIKER------------------------------------------ 347 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~-~~~~~l~~~l~~~------------------------------------------ 347 (435)
.+.......+|++.|.+.. .+. +.+..|..-+.+.
T Consensus 122 ~ats~aetlviltasms~P--w~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~ 199 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNP--WTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTV 199 (473)
T ss_pred cccCccceEEEEEEecCCc--HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccc
Confidence 3322223568888888853 222 2222333322221
Q ss_pred --------------------cCCCcEEEEEeccCCCCCCCccccc--hhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHH
Q 037423 348 --------------------FSDHIWLDVVSKCDLLQTSPVAYVT--EDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLN 405 (435)
Q Consensus 348 --------------------~~~~piIvV~NK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~ 405 (435)
.-+.|+++|++|||.+..-+....+ +.+.-....+..|+-..+...|++|++...|++
T Consensus 200 ~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNid 279 (473)
T KOG3905|consen 200 VGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNID 279 (473)
T ss_pred ccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchH
Confidence 1356799999999986532221111 122222334566777778889999999999999
Q ss_pred HHHHHHHHHHhcc
Q 037423 406 ELKDRVYQMLVGQ 418 (435)
Q Consensus 406 eL~~~i~~~l~~~ 418 (435)
-|..+|.......
T Consensus 280 llyKYivhr~yG~ 292 (473)
T KOG3905|consen 280 LLYKYIVHRSYGF 292 (473)
T ss_pred HHHHHHHHHhcCc
Confidence 9999998765443
No 370
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=0.00012 Score=74.32 Aligned_cols=123 Identities=13% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCcc---ccCCceeeeee------------------EEEE-----------EeC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEV---CNYPFTTRGIL------------------MGHI-----------NLG 282 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v---~~~~~tT~~~~------------------~~~~-----------~~~ 282 (435)
..+..++++|++|+||||++..|...-... ......|.|.. .... .+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 456789999999999999999986421000 00001111111 1111 123
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCC-------cEEE
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDH-------IWLD 355 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~-------piIv 355 (435)
+.++++|||||......... +.+..-.-...+.-+++|++++.. .++....+....... ++ .-=+
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~---e~La~L~~~~~~~~~lLVLsAts~----~~~l~evi~~f~~~~-~~p~~~~~~~~~~ 286 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVS---DQIAMLHGADTPVQRLLLLNATSH----GDTLNEVVQAYRSAA-GQPKAALPDLAGC 286 (374)
T ss_pred CCCEEEEcCCCCCcccHHHH---HHHHHHhccCCCCeEEEEecCccC----hHHHHHHHHHHHHhh-cccccccCCCCEE
Confidence 56889999999875432221 222111111223457889998832 333333333333321 11 2247
Q ss_pred EEeccCCCCC
Q 037423 356 VVSKCDLLQT 365 (435)
Q Consensus 356 V~NK~Dl~~~ 365 (435)
|+||.|-...
T Consensus 287 I~TKlDEt~~ 296 (374)
T PRK14722 287 ILTKLDEASN 296 (374)
T ss_pred EEeccccCCC
Confidence 8899997654
No 371
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.16 E-value=2.1e-06 Score=88.03 Aligned_cols=60 Identities=30% Similarity=0.369 Sum_probs=51.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
..+|++||+|||||||+||+|.+.+ +.|+..||.|+.+....+. -.+.+.|+||+.....
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccCC
Confidence 4679999999999999999999875 5899999999999877664 3568999999876543
No 372
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.16 E-value=8.4e-07 Score=88.05 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCC
Q 037423 216 AVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 216 ~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 294 (435)
|-..|.+++..+++|. .+.....|++||+||+||||+||.|...++ .+++.||.|+-.....+ -.++.+||+||+
T Consensus 287 GKgalI~llRQf~kLh-~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGv 362 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKLH-SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGV 362 (572)
T ss_pred chhHHHHHHHHHHhhc-cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCc
Confidence 3345677667777765 355678899999999999999999987766 78999998875443322 256789999998
Q ss_pred CCCC
Q 037423 295 LQRR 298 (435)
Q Consensus 295 ~~~~ 298 (435)
.-..
T Consensus 363 Vyps 366 (572)
T KOG2423|consen 363 VYPS 366 (572)
T ss_pred cCCC
Confidence 7544
No 373
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=0.00018 Score=73.49 Aligned_cols=146 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC----------CC--cccc-CC-c---------eeeeeeEEEE-----------EeC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG----------KP--EVCN-YP-F---------TTRGILMGHI-----------NLG 282 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~----------~~--~v~~-~~-~---------tT~~~~~~~~-----------~~~ 282 (435)
+..++++|++|+||||.+..++.. ++ ...+ +. + .-.+...... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999887621 11 0000 00 0 0001111110 113
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh--cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT--HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKC 360 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~--~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~ 360 (435)
+..++++||||....... .+.++. ..+. ..+.-+++|+|++. + ..+....+...... .+-=+++||.
T Consensus 254 ~~DlVLIDTaGr~~~~~~---~l~el~-~~l~~~~~~~e~~LVlsat~--~--~~~~~~~~~~~~~~---~~~~~I~TKl 322 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFM---KLAEMK-ELLNACGRDAEFHLAVSSTT--K--TSDVKEIFHQFSPF---SYKTVIFTKL 322 (388)
T ss_pred CCCEEEEcCCCCCccCHH---HHHHHH-HHHHhcCCCCeEEEEEcCCC--C--HHHHHHHHHHhcCC---CCCEEEEEec
Confidence 568899999998754321 122221 1122 11235889999883 2 44444444444332 1334899999
Q ss_pred CCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCH-HHHH
Q 037423 361 DLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGL-NELK 408 (435)
Q Consensus 361 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI-~eL~ 408 (435)
|-..... .+..+......|+.+++ +|++| +++.
T Consensus 323 Det~~~G-------------~~l~~~~~~~~Pi~yit--~Gq~vPeDl~ 356 (388)
T PRK12723 323 DETTCVG-------------NLISLIYEMRKEVSYVT--DGQIVPHNIS 356 (388)
T ss_pred cCCCcch-------------HHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence 9765431 12222222235666665 47777 5544
No 374
>PRK10867 signal recognition particle protein; Provisional
Probab=98.15 E-value=0.00011 Score=76.15 Aligned_cols=72 Identities=25% Similarity=0.221 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..++|+||||..........++..+... -.++.+++|+|+. . .++.......+.+.. ...-+|+||.|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~---v~p~evllVlda~--~---gq~av~~a~~F~~~~--~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAA---VNPDEILLVVDAM--T---GQDAVNTAKAFNEAL--GLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHh---hCCCeEEEEEecc--c---HHHHHHHHHHHHhhC--CCCEEEEeCccC
Confidence 45789999999875433222222222211 1346689999976 2 344444445554432 123478899996
Q ss_pred CC
Q 037423 363 LQ 364 (435)
Q Consensus 363 ~~ 364 (435)
..
T Consensus 253 ~~ 254 (433)
T PRK10867 253 DA 254 (433)
T ss_pred cc
Confidence 43
No 375
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.15 E-value=1.4e-05 Score=72.23 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=56.5
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
...+... |++++|+|++. +....+.. +...+ .++|.++|+||+|+.... . .....++....
T Consensus 14 ~~~i~~a-D~il~v~D~~~--~~~~~~~~-i~~~~----~~k~~ilVlNK~Dl~~~~-------~----~~~~~~~~~~~ 74 (171)
T cd01856 14 KEKLKLV-DLVIEVRDARI--PLSSRNPL-LEKIL----GNKPRIIVLNKADLADPK-------K----TKKWLKYFESK 74 (171)
T ss_pred HHHHhhC-CEEEEEeeccC--ccCcCChh-hHhHh----cCCCEEEEEehhhcCChH-------H----HHHHHHHHHhc
Confidence 4444444 89999999974 33333322 22222 368999999999996432 0 01111221222
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
...++.+||+++.|+++|.+.+.+.+.
T Consensus 75 ~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 376
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.9e-05 Score=77.33 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=86.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC-------CC---------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG-------KP---------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~-------~~---------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+.-.|+-+|+..-|||||..+++.. ++ ......|.|.+.....++...++|-=+|+||+.+.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY-- 130 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY-- 130 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH--
Confidence 4456899999999999999988631 11 11122345555443334445678889999999653
Q ss_pred hhhhHHHHHHHHHHhcCC--cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhH
Q 037423 300 EDRNNLEKLTLAVLTHLP--TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~--d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
..+.+...+ |+.|+|+.++ +|.-.|...+++ +.+...-..+++.+||.|+++..+..+..+-..+
T Consensus 131 ---------IKNMItGaaqMDGaILVVaat--DG~MPQTrEHlL--LArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~R 197 (449)
T KOG0460|consen 131 ---------IKNMITGAAQMDGAILVVAAT--DGPMPQTREHLL--LARQVGVKHIVVFINKVDLVDDPEMLELVEMEIR 197 (449)
T ss_pred ---------HHHhhcCccccCceEEEEEcC--CCCCcchHHHHH--HHHHcCCceEEEEEecccccCCHHHHHHHHHHHH
Confidence 122222221 6788888888 565556555432 2233223568899999999966543332222222
Q ss_pred HHHHHHhhhhcCCCcEEEcccCC
Q 037423 378 EHLEMASYRKMGPDGAIRVSVMN 400 (435)
Q Consensus 378 ~~~~~~~~~~~~~~~~i~vSA~~ 400 (435)
++.....| .....|++.-||+-
T Consensus 198 ElLse~gf-~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 198 ELLSEFGF-DGDNTPVIRGSALC 219 (449)
T ss_pred HHHHHcCC-CCCCCCeeecchhh
Confidence 22221112 12235888777643
No 377
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.14 E-value=8.8e-06 Score=81.22 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=57.8
Q ss_pred hHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCC
Q 037423 218 DDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQ 296 (435)
Q Consensus 218 ~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~ 296 (435)
+.|..+...++....+ ....+++++|.|||||||+||+|...+. .+++.||.|+.....++ +..+.|+|.||+.-
T Consensus 234 e~l~~~lgny~~~~~l-k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 234 ETLMKVLGNYCRKGEL-KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIVP 309 (435)
T ss_pred HHHHHHhcCccccccc-CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec---cCCceeccCCceee
Confidence 3444444433332211 3567899999999999999999987765 78999999999887665 45688999999876
Q ss_pred CCc
Q 037423 297 RRD 299 (435)
Q Consensus 297 ~~~ 299 (435)
.+.
T Consensus 310 ~~~ 312 (435)
T KOG2484|consen 310 PSI 312 (435)
T ss_pred cCC
Confidence 543
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.13 E-value=1.4e-05 Score=78.22 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 309 TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 309 ~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
....+... |+|++|+|+. .+.+..+.. +...+ .++|+++|+||+|+.+... ......+...
T Consensus 15 ~~~~l~~a-DvVl~V~Dar--~p~~~~~~~-i~~~l----~~kp~IiVlNK~DL~~~~~-----------~~~~~~~~~~ 75 (276)
T TIGR03596 15 IKEKLKLV-DVVIEVLDAR--IPLSSRNPM-IDEIR----GNKPRLIVLNKADLADPAV-----------TKQWLKYFEE 75 (276)
T ss_pred HHHHHhhC-CEEEEEEeCC--CCCCCCChh-HHHHH----CCCCEEEEEEccccCCHHH-----------HHHHHHHHHH
Confidence 34444444 9999999987 344444332 23322 2689999999999964320 0111111111
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+.+++.+||+++.|+++|++.+.+.+...
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 234689999999999999999999887654
No 379
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.13 E-value=2e-05 Score=73.18 Aligned_cols=73 Identities=25% Similarity=0.193 Sum_probs=41.7
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+++|||||..........++..+.... .++-+++|+|++. + .++... .....+.+ .+-=+++||.|.
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~--~--~~~~~~-~~~~~~~~--~~~~lIlTKlDe 152 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEAL---NPDEVHLVLSATM--G--QEDLEQ-ALAFYEAF--GIDGLILTKLDE 152 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHH---SSSEEEEEEEGGG--G--GHHHHH-HHHHHHHS--STCEEEEESTTS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhc---CCccceEEEeccc--C--hHHHHH-HHHHhhcc--cCceEEEEeecC
Confidence 457899999999765443333333332222 3567999999883 2 334432 33333332 122367999997
Q ss_pred CCC
Q 037423 363 LQT 365 (435)
Q Consensus 363 ~~~ 365 (435)
...
T Consensus 153 t~~ 155 (196)
T PF00448_consen 153 TAR 155 (196)
T ss_dssp SST
T ss_pred CCC
Confidence 654
No 380
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.10 E-value=0.00034 Score=72.57 Aligned_cols=121 Identities=22% Similarity=0.228 Sum_probs=63.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC------CCccc---cCCce--------e----eeeeEEE-----------EEeCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG------KPEVC---NYPFT--------T----RGILMGH-----------INLGY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~------~~~v~---~~~~t--------T----~~~~~~~-----------~~~~~ 283 (435)
.+..++++|++|+||||++..|+.. ...+. ..++. + .+..... -...+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 3568999999999999988876521 11111 00000 0 0000000 01125
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..++||||||.........+.+..+... ...+.-+++|++++. ...+...+...+... .+--+++||+|-.
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~--~~~~~~~~LVl~a~~----~~~~l~~~~~~f~~~---~~~~vI~TKlDet 370 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEF--SGEPIDVYLVLSATT----KYEDLKDIYKHFSRL---PLDGLIFTKLDET 370 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhc--cCCCCeEEEEEECCC----CHHHHHHHHHHhCCC---CCCEEEEeccccc
Confidence 6789999999865543332333332221 112345788888762 344544444444332 1235899999975
Q ss_pred CC
Q 037423 364 QT 365 (435)
Q Consensus 364 ~~ 365 (435)
..
T Consensus 371 ~~ 372 (424)
T PRK05703 371 SS 372 (424)
T ss_pred cc
Confidence 43
No 381
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.06 E-value=0.00028 Score=72.95 Aligned_cols=127 Identities=19% Similarity=0.247 Sum_probs=77.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCc--------------c--c---------------------------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPE--------------V--C--------------------------------- 265 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~--------------v--~--------------------------------- 265 (435)
.+.|+|+++|.-.+||||.+..++.++.. | +
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 56789999999999999999988743210 0 0
Q ss_pred -----cCCceeeeeeEEEEEeCC---ceEEEEeCCCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEEe-CCCCCC
Q 037423 266 -----NYPFTTRGILMGHINLGY---QNFQITDTPGLLQRR-----DEDRNNLEKLTLAVLTHLPTAILFVHD-LSGECG 331 (435)
Q Consensus 266 -----~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~-----~~~~~~ie~~~~~~l~~~~d~il~ViD-~s~~~g 331 (435)
-..|.|.......+++.| .+++++|.||+...- .+..+.+..++..++.+ +++||+|+. .| -.
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N-PNAIILCIQDGS--VD 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN-PNAIILCIQDGS--VD 462 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcC-CCeEEEEeccCC--cc
Confidence 012334443333444433 578999999987542 23345566666666555 577777764 22 11
Q ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 332 TSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 332 ~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
........+...+-.. ++..|+|++|.|+...+
T Consensus 463 AERSnVTDLVsq~DP~--GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPH--GRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhhhHHHHHHhcCCC--CCeeEEEEeecchhhhc
Confidence 1111222233333333 68899999999998654
No 382
>PRK12289 GTPase RsgA; Reviewed
Probab=98.06 E-value=1.9e-05 Score=79.78 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=56.5
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+.+. |.+++|+|+.+. .++......++..+.. .+.|+++|+||+||.+... . ..+.......+.+
T Consensus 87 ~aNv-D~vLlV~d~~~p-~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~-------~----~~~~~~~~~~g~~ 151 (352)
T PRK12289 87 VANA-DQILLVFALAEP-PLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTE-------Q----QQWQDRLQQWGYQ 151 (352)
T ss_pred hhcC-CEEEEEEECCCC-CCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHH-------H----HHHHHHHHhcCCe
Confidence 4444 889999999743 2344433445544433 4799999999999975321 0 1111111222357
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~ 413 (435)
++++||++|.|+++|++.+..
T Consensus 152 v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 152 PLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred EEEEEcCCCCCHHHHhhhhcc
Confidence 899999999999999998865
No 383
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.05 E-value=1.1e-05 Score=75.24 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhHHHHHH----H
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNNLEKLT----L 310 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ie~~~----~ 310 (435)
..+|.++|.+|+||||+-..+.... ..-...+|.|.|+...|+.+-| .-+.+||..|... .+|.+. .
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~-------fmen~~~~q~d 76 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE-------FMENYLSSQED 76 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH-------HHHHHHhhcch
Confidence 4689999999999999888765322 2223456888898888887644 6678999999842 222221 2
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHH---HHHHHHHHhcCCCcEEEEEeccCCCCCCCc
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQF---TIYKEIKERFSDHIWLDVVSKCDLLQTSPV 368 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~---~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~ 368 (435)
..+... +++++|+|++.++ -..|.. .-++.+....+.-.+...+.|+|++..+..
T Consensus 77 ~iF~nV-~vli~vFDves~e--~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 77 NIFRNV-QVLIYVFDVESRE--MEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred hhheeh-eeeeeeeeccchh--hhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchH
Confidence 223333 7899999998431 122222 233344444456678899999999987644
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=4.4e-05 Score=80.08 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC--------CCc-cc-c-CCc----------eeeeeeEEEE-----------EeC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG--------KPE-VC-N-YPF----------TTRGILMGHI-----------NLG 282 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~--------~~~-v~-~-~~~----------tT~~~~~~~~-----------~~~ 282 (435)
..+..++++|++|+||||++..|... ++. +. + +.. ...++..... .+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 35788999999999999999887631 110 11 0 000 0001111110 013
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+.+++||||||.........+.+..+ .... ....++|++.+. +..+...+++.+... .+.-+|+||+|.
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L--~aa~--~~a~lLVLpAts----s~~Dl~eii~~f~~~---~~~gvILTKlDE 496 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWL--RAAR--QVTSLLVLPANA----HFSDLDEVVRRFAHA---KPQGVVLTKLDE 496 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHH--HHhh--cCCcEEEEECCC----ChhHHHHHHHHHHhh---CCeEEEEecCcC
Confidence 56789999999875432222222211 1112 234678888662 345554455555442 467799999997
Q ss_pred CC
Q 037423 363 LQ 364 (435)
Q Consensus 363 ~~ 364 (435)
..
T Consensus 497 t~ 498 (559)
T PRK12727 497 TG 498 (559)
T ss_pred cc
Confidence 54
No 385
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.6e-05 Score=80.68 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=69.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeee---------------------------------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGIL--------------------------------------- 275 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~--------------------------------------- 275 (435)
...-+|+|.|+.+.||||++|+++..+...+..-.||.-+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 35678999999999999999999855432222211111100
Q ss_pred ----EEEEEeCC-------ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHH
Q 037423 276 ----MGHINLGY-------QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEI 344 (435)
Q Consensus 276 ----~~~~~~~~-------~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l 344 (435)
...+.+++ ..+.++|.||+.-..... . .+......+|+++||..+.+. .+.... +++...
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t-s-----wid~~cldaDVfVlV~NaEnt--lt~sek-~Ff~~v 257 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT-S-----WIDSFCLDADVFVLVVNAENT--LTLSEK-QFFHKV 257 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhh-H-----HHHHHhhcCCeEEEEecCccH--hHHHHH-HHHHHh
Confidence 01111111 246899999997654221 1 122222234899999887632 333333 355555
Q ss_pred HHhcCCCcEEEEEeccCCCCCC
Q 037423 345 KERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 345 ~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.+. ...++++.||||....+
T Consensus 258 s~~--KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 258 SEE--KPNIFILNNKWDASASE 277 (749)
T ss_pred hcc--CCcEEEEechhhhhccc
Confidence 553 34477788999987654
No 386
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.04 E-value=1.7e-05 Score=69.39 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=48.0
Q ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 309 TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 309 ~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
....+... |++++|+|++. +.+..+.. +...+.....++|+++|+||+|+.... + ......+...
T Consensus 5 ~~~~i~~a-D~vl~ViD~~~--p~~~~~~~-l~~~l~~~~~~k~~iivlNK~DL~~~~-------~----~~~~~~~~~~ 69 (141)
T cd01857 5 LWRVVERS-DIVVQIVDARN--PLLFRPPD-LERYVKEVDPRKKNILLLNKADLLTEE-------Q----RKAWAEYFKK 69 (141)
T ss_pred HHHHHhhC-CEEEEEEEccC--CcccCCHH-HHHHHHhccCCCcEEEEEechhcCCHH-------H----HHHHHHHHHh
Confidence 33445554 89999999874 34444332 344444333478999999999996432 1 1112222222
Q ss_pred CCCcEEEcccCCCCC
Q 037423 389 GPDGAIRVSVMNEEG 403 (435)
Q Consensus 389 ~~~~~i~vSA~~g~G 403 (435)
.+.+++++||+++.+
T Consensus 70 ~~~~ii~iSa~~~~~ 84 (141)
T cd01857 70 EGIVVVFFSALKENA 84 (141)
T ss_pred cCCeEEEEEecCCCc
Confidence 235789999998763
No 387
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=3.2e-05 Score=76.50 Aligned_cols=161 Identities=18% Similarity=0.162 Sum_probs=91.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccc--------------cCCceeeeeeEEE---------EEe------------C
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVC--------------NYPFTTRGILMGH---------INL------------G 282 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~--------------~~~~tT~~~~~~~---------~~~------------~ 282 (435)
-+++++|--.+|||||+--|..+..... -..+.|..+.... ++| .
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 4789999999999999987764321100 0112222111111 111 1
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHH-hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVL-THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l-~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
..-+.++|.+|..+... -++..+ .+.++..++|+.+...+..+..+.. ..+..+ +.|++++++|+|
T Consensus 248 SKlvTfiDLAGh~kY~~--------TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHL---gl~~AL--~iPfFvlvtK~D 314 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQK--------TTIHGLTGYTPHFACLVVSADRGITWTTREHL---GLIAAL--NIPFFVLVTKMD 314 (591)
T ss_pred cceEEEeecccchhhhe--------eeeeecccCCCceEEEEEEcCCCCccccHHHH---HHHHHh--CCCeEEEEEeec
Confidence 23468999999865321 122222 3457888999998854444433332 334444 799999999999
Q ss_pred CCCCCCccccchhhh-------------------HHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHH
Q 037423 362 LLQTSPVAYVTEDED-------------------SEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRV 411 (435)
Q Consensus 362 l~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i 411 (435)
+.+.........++. .......+.......|+|.+|+.+|+|++-|...+
T Consensus 315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 998743322111111 11112222233334689999999999997655443
No 388
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=1.7e-05 Score=84.56 Aligned_cols=112 Identities=18% Similarity=0.167 Sum_probs=74.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCcccc-C---------------CceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCN-Y---------------PFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~-~---------------~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
..+.++++.+...|||||..+|.......+. . .|.|..........++..+.+||+||+.+...
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s 87 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS 87 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh
Confidence 3467899999999999999998743322111 1 12222222222333678899999999998754
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
+. .....++|..++++|+- +|...+....+.+...+ +...++|+||+|
T Consensus 88 ev---------ssas~l~d~alvlvdvv--egv~~qt~~vlrq~~~~---~~~~~lvinkid 135 (887)
T KOG0467|consen 88 EV---------SSASRLSDGALVLVDVV--EGVCSQTYAVLRQAWIE---GLKPILVINKID 135 (887)
T ss_pred hh---------hhhhhhcCCcEEEEeec--cccchhHHHHHHHHHHc---cCceEEEEehhh
Confidence 32 12223457888899998 67888877644444444 577889999999
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.00 E-value=0.0002 Score=74.10 Aligned_cols=72 Identities=29% Similarity=0.255 Sum_probs=41.2
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..++|+||||..........++..+.. .-.++.+++|+|++ .+ ++.......+.... ...=+|+||.|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~---~~~p~e~lLVvda~--tg---q~~~~~a~~f~~~v--~i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKE---ILNPDEILLVVDAM--TG---QDAVNTAKTFNERL--GLTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHH---hhCCceEEEEEecc--ch---HHHHHHHHHHHhhC--CCCEEEEeCccC
Confidence 4568999999987543322222222221 11256789999976 22 44444445554432 123477999996
Q ss_pred CC
Q 037423 363 LQ 364 (435)
Q Consensus 363 ~~ 364 (435)
..
T Consensus 252 ~~ 253 (428)
T TIGR00959 252 DA 253 (428)
T ss_pred cc
Confidence 43
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=97.98 E-value=3.2e-05 Score=76.50 Aligned_cols=83 Identities=19% Similarity=0.124 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|++++|+|++++ .........|+..+.. .+.|+++|+||+|+.... + .......+....+.+++++
T Consensus 81 iD~vllV~d~~~p-~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~-------~---~~~~~~~~~~~~g~~v~~v 147 (298)
T PRK00098 81 VDQAVLVFAAKEP-DFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDL-------E---EARELLALYRAIGYDVLEL 147 (298)
T ss_pred CCEEEEEEECCCC-CCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCH-------H---HHHHHHHHHHHCCCeEEEE
Confidence 4889999999743 2223333345555554 378999999999996321 0 0111112222223579999
Q ss_pred ccCCCCCHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVY 412 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~ 412 (435)
||++|.|+++|++.+.
T Consensus 148 SA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 148 SAKEGEGLDELKPLLA 163 (298)
T ss_pred eCCCCccHHHHHhhcc
Confidence 9999999999998875
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.97 E-value=3.3e-05 Score=76.02 Aligned_cols=83 Identities=19% Similarity=0.109 Sum_probs=56.9
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|.+++|+|+.++. ++......|+..+... ++|+++|+||+||.+.. + . .....+....+.+++++
T Consensus 79 vD~vllV~d~~~p~-~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~-------~---~-~~~~~~~~~~g~~v~~v 144 (287)
T cd01854 79 VDQLVIVVSLNEPF-FNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDE-------E---E-ELELVEALALGYPVLAV 144 (287)
T ss_pred CCEEEEEEEcCCCC-CCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChH-------H---H-HHHHHHHHhCCCeEEEE
Confidence 48899999998542 2555555566655543 78999999999997542 0 0 01111112234589999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~ 413 (435)
||+++.|+++|+..+..
T Consensus 145 SA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 145 SAKTGEGLDELREYLKG 161 (287)
T ss_pred ECCCCccHHHHHhhhcc
Confidence 99999999999988764
No 392
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.0021 Score=66.07 Aligned_cols=122 Identities=14% Similarity=0.138 Sum_probs=64.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC-------CCc-c-ccC-C-c---------eeeeeeEEEE----------EeCCceE
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG-------KPE-V-CNY-P-F---------TTRGILMGHI----------NLGYQNF 286 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~-------~~~-v-~~~-~-~---------tT~~~~~~~~----------~~~~~~~ 286 (435)
+..++++|++|+||||++..|+.. ++. + .+. . + ...+...... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 456899999999999999988631 110 0 000 0 0 0000000000 0135678
Q ss_pred EEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 287 QITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 287 ~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
++|||||...+.....+.+..+....-...+.-+++|+|++.. .++........... .+-=+|+||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~----~~~~~~~~~~f~~~---~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS----YHHTLTVLKAYESL---NYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC----HHHHHHHHHHhcCC---CCCEEEEEcccCCCC
Confidence 9999999876544333333332211111113458899998832 34444344433322 123489999997654
No 393
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.93 E-value=0.00018 Score=75.24 Aligned_cols=69 Identities=20% Similarity=0.110 Sum_probs=47.0
Q ss_pred CCcEEEEEeccCCCCCCCccc-cchh-hhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 350 DHIWLDVVSKCDLLQTSPVAY-VTED-EDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 350 ~~piIvV~NK~Dl~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.|++||++|+|....-+... ..++ +.-....+..++-.++...|++|++...+++-|..+|...+...
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 368999999999865321111 1111 22223445566667778899999999999999999988776544
No 394
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.91 E-value=9.6e-05 Score=75.08 Aligned_cols=90 Identities=26% Similarity=0.197 Sum_probs=56.1
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC-
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP- 390 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 390 (435)
.+...++++++|+|+.+..+. |..++.+...++|+++|+||+|+....... +. ....+.++....+
T Consensus 59 ~~~~~~~~Il~VvD~~d~~~s-------~~~~l~~~~~~~piilV~NK~DLl~k~~~~---~~---~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 59 SLGDSNALIVYVVDIFDFEGS-------LIPELKRFVGGNPVLLVGNKIDLLPKSVNL---SK---IKEWMKKRAKELGL 125 (360)
T ss_pred hcccCCcEEEEEEECcCCCCC-------ccHHHHHHhCCCCEEEEEEchhhCCCCCCH---HH---HHHHHHHHHHHcCC
Confidence 334455899999998753221 333333333478999999999997643111 11 1111112222222
Q ss_pred --CcEEEcccCCCCCHHHHHHHHHHH
Q 037423 391 --DGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 391 --~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
..++.+||++|.|++++++.+.+.
T Consensus 126 ~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 126 KPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 258999999999999999999765
No 395
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.90 E-value=6.6e-05 Score=73.88 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
...+... |+|++|+|+. .+.+..+.. +...+ .++|+++|+||+|+.+.. . ......+....
T Consensus 19 ~~~l~~a-DvIL~VvDar--~p~~~~~~~-l~~~~----~~kp~iiVlNK~DL~~~~-------~----~~~~~~~~~~~ 79 (287)
T PRK09563 19 KENLKLV-DVVIEVLDAR--IPLSSENPM-IDKII----GNKPRLLILNKSDLADPE-------V----TKKWIEYFEEQ 79 (287)
T ss_pred HHHhhhC-CEEEEEEECC--CCCCCCChh-HHHHh----CCCCEEEEEEchhcCCHH-------H----HHHHHHHHHHc
Confidence 3444444 9999999987 344443332 22222 268999999999996431 0 01111111111
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.+++.+||+++.|+++|++.+.+.+...
T Consensus 80 ~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 80 GIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 34689999999999999999999887654
No 396
>PRK12288 GTPase RsgA; Reviewed
Probab=97.89 E-value=8.5e-05 Score=74.93 Aligned_cols=84 Identities=20% Similarity=0.030 Sum_probs=57.1
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
|.+++|++.+ ..++......|+..+.. .+.|.++|+||+|+.+.... .............+.+++++|
T Consensus 122 D~vlIV~s~~--p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~--------~~~~~~~~~y~~~g~~v~~vS 189 (347)
T PRK12288 122 DQIVIVSAVL--PELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGR--------AFVNEQLDIYRNIGYRVLMVS 189 (347)
T ss_pred cEEEEEEeCC--CCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHH--------HHHHHHHHHHHhCCCeEEEEe
Confidence 7788888876 45666666666655443 37899999999999754310 011111112222235899999
Q ss_pred cCCCCCHHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVYQ 413 (435)
Q Consensus 398 A~~g~GI~eL~~~i~~ 413 (435)
|+++.|+++|++.+..
T Consensus 190 A~tg~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGEGLEELEAALTG 205 (347)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999999875
No 397
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.86 E-value=0.00014 Score=73.56 Aligned_cols=119 Identities=18% Similarity=0.141 Sum_probs=69.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEE-----------------------------EEeCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGH-----------------------------INLGY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~-----------------------------~~~~~ 283 (435)
++..++++|++||||||.+..|+..-. .-......|.|.+..- ..+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 478899999999999999988763211 1111122333332110 01125
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcE-EEEEeccCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIW-LDVVSKCDL 362 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~pi-IvV~NK~Dl 362 (435)
+++++|||.|...........++.+.... + +.-+.+|++++. ...|...++..+... |+ =+++||.|-
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~--~-~i~~~Lvlsat~----K~~dlkei~~~f~~~----~i~~~I~TKlDE 350 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVS--H-SIEVYLVLSATT----KYEDLKEIIKQFSLF----PIDGLIFTKLDE 350 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhcc--c-cceEEEEEecCc----chHHHHHHHHHhccC----CcceeEEEcccc
Confidence 78899999998766554433333332222 1 234778888774 356665555554433 32 368999997
Q ss_pred CCC
Q 037423 363 LQT 365 (435)
Q Consensus 363 ~~~ 365 (435)
...
T Consensus 351 T~s 353 (407)
T COG1419 351 TTS 353 (407)
T ss_pred cCc
Confidence 654
No 398
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.84 E-value=3.9e-05 Score=68.64 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=19.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
|.+.++|..|+|||||++.++..
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 45789999999999999988753
No 399
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.80 E-value=0.00029 Score=68.57 Aligned_cols=122 Identities=21% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC------CC-ccc--cCC----------ceeeeeeEEEE--------------Ee
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG------KP-EVC--NYP----------FTTRGILMGHI--------------NL 281 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~------~~-~v~--~~~----------~tT~~~~~~~~--------------~~ 281 (435)
.++.+++++|++|+||||++..++.. .. .++ .+. ....++..... ..
T Consensus 73 ~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 73 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 35689999999999999999887532 11 000 000 00011110000 01
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
.+..+.++||||.........+++..+. -...++-+++|+|++. ..++...+++.+... .+-=+++||.|
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~---~~~~~~~~~LVl~a~~----~~~d~~~~~~~f~~~---~~~~~I~TKlD 222 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETM---GQVEPDYICLTLSASM----KSKDMIEIITNFKDI---HIDGIVFTKFD 222 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHH---hhhCCCeEEEEEcCcc----CHHHHHHHHHHhCCC---CCCEEEEEeec
Confidence 2468899999999765433323222221 1223466899999873 244544455544432 23348999999
Q ss_pred CCCCC
Q 037423 362 LLQTS 366 (435)
Q Consensus 362 l~~~~ 366 (435)
-....
T Consensus 223 et~~~ 227 (270)
T PRK06731 223 ETASS 227 (270)
T ss_pred CCCCc
Confidence 87643
No 400
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=1.4e-05 Score=79.87 Aligned_cols=115 Identities=18% Similarity=0.127 Sum_probs=82.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhC---C-----CC----------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST---G-----KP----------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~---~-----~~----------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
-+.|+++.+..+||||...+++. . .+ ......|.|.......++|.|.++.+|||||+.+..
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 35689999999999999988762 1 00 122234566666677888999999999999998875
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.+. |. ....+ |+++.|+|+| .|...+.+..|.+.- +. +.|-+..+||+|....
T Consensus 117 lev----er-clrvl----dgavav~das--agve~qtltvwrqad-k~--~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEV----ER-CLRVL----DGAVAVFDAS--AGVEAQTLTVWRQAD-KF--KIPAHCFINKMDKLAA 169 (753)
T ss_pred EEH----HH-HHHHh----cCeEEEEecc--CCcccceeeeehhcc-cc--CCchhhhhhhhhhhhh
Confidence 432 11 22333 7789999999 678888877665532 22 6888999999997654
No 401
>PRK01889 GTPase RsgA; Reviewed
Probab=97.65 E-value=8.7e-05 Score=75.24 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=54.1
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|.+++|+++. ..++......++..+... +.+.++|+||+||.+.. .+ ....+..+ ..+.+++.+
T Consensus 113 vD~vliV~s~~--p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~------~~---~~~~~~~~--~~g~~Vi~v 177 (356)
T PRK01889 113 VDTVFIVCSLN--HDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDA------EE---KIAEVEAL--APGVPVLAV 177 (356)
T ss_pred CCEEEEEEecC--CCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCH------HH---HHHHHHHh--CCCCcEEEE
Confidence 37799999986 345554444445444443 67888999999997531 00 11122222 224589999
Q ss_pred ccCCCCCHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVY 412 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~ 412 (435)
|+++|.|+++|..++.
T Consensus 178 Sa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 178 SALDGEGLDVLAAWLS 193 (356)
T ss_pred ECCCCccHHHHHHHhh
Confidence 9999999999998875
No 402
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.64 E-value=0.00017 Score=83.70 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=70.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccC--------CceeeeeeEEEEEeCCceEEEEeCCCCCCCCc----hhhhHH
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNY--------PFTTRGILMGHINLGYQNFQITDTPGLLQRRD----EDRNNL 305 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~--------~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~i 305 (435)
|=-+++|++|+||||+++.. +-.+..... .+.|+++..- -..+-+++||+|..-... .+...+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~ww----f~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWW----FTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceE----ecCCEEEEcCCCccccCCCcccccHHHH
Confidence 45799999999999999976 333322211 1112221111 123557999999653322 223344
Q ss_pred HHHHHHHHhcC----CcEEEEEEeCCCCCCCCHHHHH-------HHHHHHHHhc-CCCcEEEEEeccCCCCC
Q 037423 306 EKLTLAVLTHL----PTAILFVHDLSGECGTSPSDQF-------TIYKEIKERF-SDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 306 e~~~~~~l~~~----~d~il~ViD~s~~~g~s~~~~~-------~l~~~l~~~~-~~~piIvV~NK~Dl~~~ 365 (435)
..+.....++. -++||+++|++.--..+.+... .-+.++.+.+ ...|+.+|+||||++..
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 44433222221 3889999999854333333222 2233344333 46899999999999854
No 403
>PRK01889 GTPase RsgA; Reviewed
Probab=97.63 E-value=2.3e-05 Score=79.47 Aligned_cols=81 Identities=23% Similarity=0.243 Sum_probs=53.0
Q ss_pred chhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccC-------Cceeeeee
Q 037423 204 QRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNY-------PFTTRGIL 275 (435)
Q Consensus 204 ~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~-------~~tT~~~~ 275 (435)
..+..+++..+.+++.|.+.. .++.+++++|.+|+|||||+|.+++... .++.. ..+|....
T Consensus 172 ~~Vi~vSa~~g~gl~~L~~~L----------~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~ 241 (356)
T PRK01889 172 VPVLAVSALDGEGLDVLAAWL----------SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRE 241 (356)
T ss_pred CcEEEEECCCCccHHHHHHHh----------hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhcc
Confidence 356667888888888888754 2456899999999999999999986432 11111 12333333
Q ss_pred EEEEEeCCceEEEEeCCCCCCC
Q 037423 276 MGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 276 ~~~~~~~~~~~~liDTpG~~~~ 297 (435)
...+.- ...++||||+...
T Consensus 242 l~~l~~---~~~l~DtpG~~~~ 260 (356)
T PRK01889 242 LHPLPS---GGLLIDTPGMREL 260 (356)
T ss_pred EEEecC---CCeecCCCchhhh
Confidence 333321 2358899998543
No 404
>PRK13796 GTPase YqeH; Provisional
Probab=97.63 E-value=0.00035 Score=71.14 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=57.0
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
...+....++|++|+|+.+..+ .|...+.+...++|+++|+||+|+....... +.. ......+....
T Consensus 63 l~~i~~~~~lIv~VVD~~D~~~-------s~~~~L~~~~~~kpviLViNK~DLl~~~~~~---~~i---~~~l~~~~k~~ 129 (365)
T PRK13796 63 LNGIGDSDALVVNVVDIFDFNG-------SWIPGLHRFVGNNPVLLVGNKADLLPKSVKK---NKV---KNWLRQEAKEL 129 (365)
T ss_pred HHhhcccCcEEEEEEECccCCC-------chhHHHHHHhCCCCEEEEEEchhhCCCccCH---HHH---HHHHHHHHHhc
Confidence 3444444458999999875321 1333444433478999999999997532111 011 11111222221
Q ss_pred C---CcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 390 P---DGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 390 ~---~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+ ..++.+||++|.|++++++.+.+..
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 1 2689999999999999999997653
No 405
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.00023 Score=68.12 Aligned_cols=122 Identities=20% Similarity=0.234 Sum_probs=72.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCce---------eeeeeEEEEEeCCceEEEEeCCCCCCCCchhh-----
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFT---------TRGILMGHINLGYQNFQITDTPGLLQRRDEDR----- 302 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~t---------T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~----- 302 (435)
.+.|..+|.+|.|||||+..|.+..+...+.+.+ |.+.....+ ..++.++||.|+.+....+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnv---rlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNV---RLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCe---eEEEEEEeecccccccCcccccchH
Confidence 4679999999999999999999776533222211 222222222 24578999999987543221
Q ss_pred -hHHHHHHH----------HHH--hc--CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 303 -NNLEKLTL----------AVL--TH--LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 303 -~~ie~~~~----------~~l--~~--~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
+.++.+-. ..+ .| .-++++|++.+++. +...-|+. ..+.+. ....+|-|+-|.|.+...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLv-tmk~Ld---skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLV-TMKKLD---SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHH-HHHHHh---hhhhhHHHHHHhhhhhHH
Confidence 12222111 111 11 13689999998863 44344443 233333 356788899999987654
No 406
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.0014 Score=66.77 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=42.4
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+.|+||+|.+.-...-.+++.... . .-.++-+++|+|+. .|....+ ..+.+.+.. +. .=+|+||.|-
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik--~-~~~P~E~llVvDam--~GQdA~~---~A~aF~e~l-~i-tGvIlTKlDG 251 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIK--E-VINPDETLLVVDAM--IGQDAVN---TAKAFNEAL-GI-TGVILTKLDG 251 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHH--h-hcCCCeEEEEEecc--cchHHHH---HHHHHhhhc-CC-ceEEEEcccC
Confidence 467899999998765433333222221 1 22357799999988 4544444 344444432 11 1278999997
Q ss_pred CCC
Q 037423 363 LQT 365 (435)
Q Consensus 363 ~~~ 365 (435)
...
T Consensus 252 daR 254 (451)
T COG0541 252 DAR 254 (451)
T ss_pred CCc
Confidence 543
No 407
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.61 E-value=5e-05 Score=63.80 Aligned_cols=113 Identities=16% Similarity=0.015 Sum_probs=62.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+++++|..|+|||+++.++....+.....- .|.. +..+| ...... .+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~-~t~~------------~~~~~-------------------~~~~~s-~~ 48 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDYVPTV-FTIG------------IDVYD-------------------PTSYES-FD 48 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccccCce-ehhh------------hhhcc-------------------ccccCC-CC
Confidence 689999999999999999965544211110 1111 11111 111112 25
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcc
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVS 397 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vS 397 (435)
.++.+++.+.. .+.... |...+.... .+.|.++++||.|+...... .. ... .++++.|
T Consensus 49 ~~~~v~~~~~~--~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~-------~~--~~~--------~~~~~~s 107 (124)
T smart00010 49 VVLQCWRVDDR--DSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQV-------AT--EEG--------LEFAETS 107 (124)
T ss_pred EEEEEEEccCH--HHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcC-------CH--HHH--------HHHHHHh
Confidence 67777887643 223222 454444332 34678899999998432210 00 011 1346789
Q ss_pred cCCCCCHH
Q 037423 398 VMNEEGLN 405 (435)
Q Consensus 398 A~~g~GI~ 405 (435)
+++|.|+.
T Consensus 108 ~~~~~~~~ 115 (124)
T smart00010 108 AKTPEEGE 115 (124)
T ss_pred CCCcchhh
Confidence 99999884
No 408
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00012 Score=76.61 Aligned_cols=116 Identities=17% Similarity=0.131 Sum_probs=79.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC------------------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP------------------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~------------------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
-+.|+++.+-.+||||+..+++.... ......+.|.......+.|.+.++.+|||||+.+..
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 34588888899999999998763210 111233455555555677788999999999999876
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.+. ..+++-+ |..++|+|+. .|...+....| ..++++ +.|.|..+||+|-....
T Consensus 119 ~EV--------eRALrVl-DGaVlvl~aV--~GVqsQt~tV~-rQ~~ry--~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 119 FEV--------ERALRVL-DGAVLVLDAV--AGVESQTETVW-RQMKRY--NVPRICFINKMDRMGAS 172 (721)
T ss_pred EEe--------hhhhhhc-cCeEEEEEcc--cceehhhHHHH-HHHHhc--CCCeEEEEehhhhcCCC
Confidence 542 2344444 5566777877 56777776644 445555 89999999999976553
No 409
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0009 Score=66.94 Aligned_cols=119 Identities=22% Similarity=0.258 Sum_probs=68.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC------CC-ccccC-------------CceeeeeeEEEE----------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG------KP-EVCNY-------------PFTTRGILMGHI---------------- 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~------~~-~v~~~-------------~~tT~~~~~~~~---------------- 279 (435)
+.-.|.++|-.|+||||.+..++.. +. .+..- ...++-+..+.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 4456899999999999999887621 10 00000 000111111111
Q ss_pred EeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 280 NLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
..++..++|+||.|.+.... ..++.+..-.-.-.+|-++||+|++ .|...+++..-|++-... --+++||
T Consensus 180 Kke~fdvIIvDTSGRh~qe~---sLfeEM~~v~~ai~Pd~vi~VmDas--iGQaae~Qa~aFk~~vdv-----g~vIlTK 249 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEA---SLFEEMKQVSKAIKPDEIIFVMDAS--IGQAAEAQARAFKETVDV-----GAVILTK 249 (483)
T ss_pred HhcCCcEEEEeCCCchhhhH---HHHHHHHHHHhhcCCCeEEEEEecc--ccHhHHHHHHHHHHhhcc-----ceEEEEe
Confidence 11367889999999875432 2233332222223378899999999 677777776555543332 1367889
Q ss_pred cCCCC
Q 037423 360 CDLLQ 364 (435)
Q Consensus 360 ~Dl~~ 364 (435)
.|-..
T Consensus 250 lDGha 254 (483)
T KOG0780|consen 250 LDGHA 254 (483)
T ss_pred cccCC
Confidence 98653
No 410
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.52 E-value=0.0017 Score=58.61 Aligned_cols=74 Identities=27% Similarity=0.252 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+.++||||...... ..++.+..-.-...++.+++|+|+.. + .+.......+.+.. + ..-+|+||.|.
T Consensus 82 ~~d~viiDt~g~~~~~~---~~l~~l~~l~~~~~~~~~~lVv~~~~--~---~~~~~~~~~~~~~~-~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQIDE---NLMEELKKIKRVVKPDEVLLVVDAMT--G---QDAVNQAKAFNEAL-G-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchhhH---HHHHHHHHHHhhcCCCeEEEEEECCC--C---hHHHHHHHHHHhhC-C-CCEEEEECCcC
Confidence 45689999999864321 22222221111122688999999862 2 22222344444332 2 35678899998
Q ss_pred CCCC
Q 037423 363 LQTS 366 (435)
Q Consensus 363 ~~~~ 366 (435)
....
T Consensus 152 ~~~~ 155 (173)
T cd03115 152 DARG 155 (173)
T ss_pred CCCc
Confidence 7643
No 411
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00026 Score=70.94 Aligned_cols=165 Identities=13% Similarity=0.036 Sum_probs=96.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC------------------C-------------ccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK------------------P-------------EVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~------------------~-------------~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
....+.++|+-.+||||+-..++... . .-....+.|.+.....++....
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 45679999999999999988765210 0 0111235677777888888889
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCC---CCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGE---CGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~---~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
++.+.|+||+-..... .+... ..+|+.++|+.+.-. .|+..--|..-...+.....-+..|+++||+|
T Consensus 158 ~ftiLDApGHk~fv~n---mI~Ga------sqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMd 228 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPN---MIGGA------SQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMD 228 (501)
T ss_pred eEEeeccCcccccchh---hcccc------chhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEecc
Confidence 9999999998654321 11111 113555666665311 12211111111122222223467999999999
Q ss_pred CCCCCCccccchhhhHHHHHHHh---hhhcCCCcEEEcccCCCCCHHHHHH
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMAS---YRKMGPDGAIRVSVMNEEGLNELKD 409 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~vSA~~g~GI~eL~~ 409 (435)
....+-....+++.......+.. +.......++++|..+|.++.+..+
T Consensus 229 dPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 229 DPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred CCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 87655333333333333333332 2223345689999999999988775
No 412
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.39 E-value=0.003 Score=66.21 Aligned_cols=160 Identities=18% Similarity=0.078 Sum_probs=88.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-c-eEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-Q-NFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~-~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.+-+.+.++|+.++|||.++++++++...-++...++.......+...+ . -+.+-|.+-........
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~----------- 491 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTS----------- 491 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccC-----------
Confidence 4557789999999999999999998765332222222112222222222 2 23333433221110000
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh-hcCCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR-KMGPD 391 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 391 (435)
-...+|++.+++|.|. ..++.-...+++.-... ...|+++|.+|+|+-...+......+ +++ +.+..
T Consensus 492 ke~~cDv~~~~YDsS~--p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpd---------e~~~~~~i~ 559 (625)
T KOG1707|consen 492 KEAACDVACLVYDSSN--PRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPD---------EFCRQLGLP 559 (625)
T ss_pred ccceeeeEEEecccCC--chHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChH---------HHHHhcCCC
Confidence 0123589999999984 34455444333333323 57899999999999765432211111 111 12234
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.+.+|.++... .++|..|..+...-
T Consensus 560 ~P~~~S~~~~~s-~~lf~kL~~~A~~P 585 (625)
T KOG1707|consen 560 PPIHISSKTLSS-NELFIKLATMAQYP 585 (625)
T ss_pred CCeeeccCCCCC-chHHHHHHHhhhCC
Confidence 667888885333 78998888876433
No 413
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.37 E-value=0.0007 Score=67.29 Aligned_cols=110 Identities=13% Similarity=0.066 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCC-CCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGE-CGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~-~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
-+.+||.+|+...... .....-.|.+|..++++-+... -|.+.+.+- ....+ ..|+++|++|+|+-
T Consensus 220 viTFIDLAGHEkYLKT-------TvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLg----LALaL--~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLKT-------TVFGMTGHMPDFTMLMIGANAGIIGMTKEHLG----LALAL--HVPVFVVVTKIDMC 286 (641)
T ss_pred eEEEEeccchhhhhhe-------eeeccccCCCCceEEEecccccceeccHHhhh----hhhhh--cCcEEEEEEeeccC
Confidence 3589999998643211 0112335778988999887732 233444332 11222 68999999999998
Q ss_pred CCCCccccchhhhHHHHHHH-----------------------hhhhcCCCcEEEcccCCCCCHHHHHHHH
Q 037423 364 QTSPVAYVTEDEDSEHLEMA-----------------------SYRKMGPDGAIRVSVMNEEGLNELKDRV 411 (435)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~i~vSA~~g~GI~eL~~~i 411 (435)
..+- .++-.+....+. +|.....+|+|.+|..+|+|++-|...+
T Consensus 287 PANi----LqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 287 PANI----LQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred cHHH----HHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 6641 111111111111 1222334689999999999997655443
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.26 E-value=0.00057 Score=64.26 Aligned_cols=43 Identities=26% Similarity=0.167 Sum_probs=26.8
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
.|.++.|+|+|.+ +......+ .++.+...-+++.+|+||+|-.
T Consensus 156 vD~vivVvDpS~~---sl~taeri-~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 156 VDLVIVVVDPSYK---SLRTAERI-KELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCEEEEEeCCcHH---HHHHHHHH-HHHHHHhCCceEEEEEeeccch
Confidence 3889999999843 22222222 2233222228999999999954
No 415
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.25 E-value=0.0037 Score=57.83 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=64.9
Q ss_pred ceEEEEeCCCCCCCCch---hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHH---HHHHHHHHhc-CCCcEEEE
Q 037423 284 QNFQITDTPGLLQRRDE---DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQF---TIYKEIKERF-SDHIWLDV 356 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~---~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~---~l~~~l~~~~-~~~piIvV 356 (435)
..+.++|.||+.+--.. -.+.++.+.. . +-.-+++|++|.. +-.+... ..+..+.... -..|-|=|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~--~-~F~~c~Vylldsq----f~vD~~KfiSG~lsAlsAMi~lE~P~INv 170 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQ--W-NFNVCVVYLLDSQ----FLVDSTKFISGCLSALSAMISLEVPHINV 170 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhc--c-cCceeEEEEeccc----hhhhHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 56899999998764221 1222222222 0 1234678888854 2111111 1111111111 26899999
Q ss_pred EeccCCCCCCCccc-----------cch---------hhhHHHHHHHhhhh-cCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 357 VSKCDLLQTSPVAY-----------VTE---------DEDSEHLEMASYRK-MGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~-----------~~~---------~~~~~~~~~~~~~~-~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
++|+||.+.....+ ... +..+....+..+.. ..-..+++.-..+.+.|+.++..|-.++
T Consensus 171 lsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 171 LSKMDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred hhHHHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 99999987632100 000 01111111222221 1224678888888888888888887766
Q ss_pred hc
Q 037423 416 VG 417 (435)
Q Consensus 416 ~~ 417 (435)
+=
T Consensus 251 Qy 252 (273)
T KOG1534|consen 251 QY 252 (273)
T ss_pred Hh
Confidence 43
No 416
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.0012 Score=62.23 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=67.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-----ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-----EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-----~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
.|+|.++|...+||||+.+-+...-. ........|++. +...-..+.+||.||+.+.-...-. ..
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D------~e 96 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFD------YE 96 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccC------HH
Confidence 37799999999999999886653211 111222223332 2212356799999999875432111 11
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHH---hcCCCcEEEEEeccCCCCCC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKE---RFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~---~~~~~piIvV~NK~Dl~~~~ 366 (435)
.+-....+.+||+|+.+. + .+....+...+.. ..++..+=+.+-|.|-...+
T Consensus 97 ~iF~~~gALifvIDaQdd--y-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDD--Y-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred HHHhccCeEEEEEechHH--H-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 122234789999997622 1 1112222222222 23667788999999988765
No 417
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.016 Score=59.63 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=45.8
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCc---EEEEEe
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHI---WLDVVS 358 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~p---iIvV~N 358 (435)
+..++++||+|.+......+..+.++. -...+|.|++|-.+- -|...-++. .+-+.+... ..| --++++
T Consensus 466 gfDVvLiDTAGR~~~~~~lm~~l~k~~---~~~~pd~i~~vgeal--vg~dsv~q~~~fn~al~~~--~~~r~id~~~lt 538 (587)
T KOG0781|consen 466 GFDVVLIDTAGRMHNNAPLMTSLAKLI---KVNKPDLILFVGEAL--VGNDSVDQLKKFNRALADH--STPRLIDGILLT 538 (587)
T ss_pred CCCEEEEeccccccCChhHHHHHHHHH---hcCCCceEEEehhhh--hCcHHHHHHHHHHHHHhcC--CCccccceEEEE
Confidence 677899999999876554443333332 234578899986654 444444443 333333332 122 247899
Q ss_pred ccCCCCC
Q 037423 359 KCDLLQT 365 (435)
Q Consensus 359 K~Dl~~~ 365 (435)
|+|.++.
T Consensus 539 k~dtv~d 545 (587)
T KOG0781|consen 539 KFDTVDD 545 (587)
T ss_pred eccchhh
Confidence 9998864
No 418
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.16 E-value=0.0013 Score=61.70 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=41.7
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEec
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL--PTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSK 359 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK 359 (435)
..++.++|.||+.+.-.. .+.+.+.. +.++.. .-+++-++|.-- |.....-...++-.+.... ...|=|=|++|
T Consensus 96 ~~~Y~lFDcPGQVELft~-h~~l~~I~-~~Lek~~~rl~~V~LiDs~y-cs~p~~~iS~lL~sl~tMl~melphVNvlSK 172 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTH-HDSLNKIF-RKLEKLDYRLVAVNLIDSHY-CSDPSKFISSLLVSLATMLHMELPHVNVLSK 172 (290)
T ss_pred cCcEEEEeCCCcEEEEec-cchHHHHH-HHHHHcCceEEEEEeeecee-eCChHHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 356899999998764322 12222221 112111 234556666541 2222222222333333322 36788899999
Q ss_pred cCCCCCCC
Q 037423 360 CDLLQTSP 367 (435)
Q Consensus 360 ~Dl~~~~~ 367 (435)
+|+.....
T Consensus 173 ~Dl~~~yg 180 (290)
T KOG1533|consen 173 ADLLKKYG 180 (290)
T ss_pred hHHHHhhc
Confidence 99987654
No 419
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.12 E-value=0.0017 Score=57.47 Aligned_cols=19 Identities=32% Similarity=0.698 Sum_probs=17.4
Q ss_pred EEEecCCCCChhhHHHHhh
Q 037423 240 LCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~ 258 (435)
++++|.+|+||||++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~ 20 (148)
T cd03114 2 IGITGVPGAGKSTLIDALI 20 (148)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999999876
No 420
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.09 E-value=0.0039 Score=62.93 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=82.1
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCC--------CCHHHHHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECG--------TSPSDQFTIY 341 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g--------~s~~~~~~l~ 341 (435)
.|.++....+.+++..+.+||..|.... |. .....+.. .++|+||+|+++-+. .-..+...++
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~----R~----kW~~~f~~-v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f 240 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSE----RK----KWIHCFDN-VTAIIFCVALSEYDQVLEEDESTNRMQESLNLF 240 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhh----hh----hHHHHhCC-CCEEEEEEECcccccchhccCcchHHHHHHHHH
Confidence 3556677778888899999999998532 11 22333444 489999999995321 1123333455
Q ss_pred HHHHH--hcCCCcEEEEEeccCCCCCC----Cccccch------hhhHHHH----HHHhhhhc---CCCcEEEcccCCCC
Q 037423 342 KEIKE--RFSDHIWLDVVSKCDLLQTS----PVAYVTE------DEDSEHL----EMASYRKM---GPDGAIRVSVMNEE 402 (435)
Q Consensus 342 ~~l~~--~~~~~piIvV~NK~Dl~~~~----~~~~~~~------~~~~~~~----~~~~~~~~---~~~~~i~vSA~~g~ 402 (435)
..+.. .+.+.|+++++||.|+.... .....+. +...... .+...... ...-+..++|.+-.
T Consensus 241 ~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~ 320 (342)
T smart00275 241 ESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTR 320 (342)
T ss_pred HHHHcCccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccH
Confidence 55553 34678999999999986432 0100000 1011111 11111111 12334678888888
Q ss_pred CHHHHHHHHHHHHhcc
Q 037423 403 GLNELKDRVYQMLVGQ 418 (435)
Q Consensus 403 GI~eL~~~i~~~l~~~ 418 (435)
++..+++.+.+.+...
T Consensus 321 ~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 321 NIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888876543
No 421
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0013 Score=75.16 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=69.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccc--------cCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc----hhhhHH
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVC--------NYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD----EDRNNL 305 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~--------~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~i 305 (435)
|=-++||+||+||||++... +.++..+ ..++ |+++.. +-+.+-++|||.|-..... .++..+
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W 199 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEW 199 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhhHHHH
Confidence 44689999999999998754 3322111 1112 333321 1234568999999755432 223333
Q ss_pred HHHH--HHHH---hcCCcEEEEEEeCCCCCCCCHHHHHHHH-------HHHHHhc-CCCcEEEEEeccCCCCC
Q 037423 306 EKLT--LAVL---THLPTAILFVHDLSGECGTSPSDQFTIY-------KEIKERF-SDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 306 e~~~--~~~l---~~~~d~il~ViD~s~~~g~s~~~~~~l~-------~~l~~~~-~~~piIvV~NK~Dl~~~ 365 (435)
..+. +.-. ..+ ++|++.+|+++--+.+..+..... +++.+.+ ...|+.+++||.|++..
T Consensus 200 ~~fL~lLkk~R~~~pi-NGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 200 LGFLGLLKKYRRRRPL-NGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHHhccCCCC-ceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 3331 1111 122 779999999865444555443222 2333322 46899999999999874
No 422
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.02 E-value=0.005 Score=61.50 Aligned_cols=140 Identities=17% Similarity=0.225 Sum_probs=81.1
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCC--------CHHHHHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGT--------SPSDQFTIY 341 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~--------s~~~~~~l~ 341 (435)
.|.++....+.+++..+.+||++|..... . .....+.. .++|+||+|+++-+.. ...+-..++
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R----~----kW~~~f~~-v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f 217 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSER----K----KWIHCFED-VTAIIFVVALSEYDQVLFEDESTNRMQESLNLF 217 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccc----h----hHHHHhCC-CCEEEEEEEchhcccccccCCcchHHHHHHHHH
Confidence 34566777788888999999999985422 1 23333443 4889999999853111 122223344
Q ss_pred HHHHH--hcCCCcEEEEEeccCCCCCC----Cccccc-------hhhhHHHH----HHHhhhhc--CCCcEEEcccCCCC
Q 037423 342 KEIKE--RFSDHIWLDVVSKCDLLQTS----PVAYVT-------EDEDSEHL----EMASYRKM--GPDGAIRVSVMNEE 402 (435)
Q Consensus 342 ~~l~~--~~~~~piIvV~NK~Dl~~~~----~~~~~~-------~~~~~~~~----~~~~~~~~--~~~~~i~vSA~~g~ 402 (435)
..+.. .+.+.|+++++||.|+.... .....+ .+...... .+...... ...-+..++|....
T Consensus 218 ~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~ 297 (317)
T cd00066 218 DSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTE 297 (317)
T ss_pred HHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchH
Confidence 44443 23578999999999976432 000000 01111111 11111111 22334677888889
Q ss_pred CHHHHHHHHHHHHhcc
Q 037423 403 GLNELKDRVYQMLVGQ 418 (435)
Q Consensus 403 GI~eL~~~i~~~l~~~ 418 (435)
++..+++.+.+.+...
T Consensus 298 ~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 298 NIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888877553
No 423
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.033 Score=56.94 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=42.1
Q ss_pred HHHHHHH----HHHHHHHHHhchh----HHHhhhcCC--------CcccchHHHHHhhhhcCC-----CCcHHHHHH
Q 037423 111 RERNKAA----KQLDALMKELAVP----LRDYVANFP--------NRKCLHPYERSLTELTLG-----DGNYEKVLK 166 (435)
Q Consensus 111 ~~r~~~~----~~l~~~~~~L~~~----L~~~l~~fp--------~~~~L~~f~~~l~e~~~~-----~~~y~~~L~ 166 (435)
..|..|+ -.||+++|||+.+ |.+||..+. +-.+|+..+.+|+.++-. .++|..+-.
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKK 499 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKK 499 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 4555664 4599999999987 899998886 567899999999887654 566654433
No 424
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.035 Score=49.56 Aligned_cols=156 Identities=19% Similarity=0.307 Sum_probs=75.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCC-CC---C-----CCC-----ch
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTP-GL---L-----QRR-----DE 300 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTp-G~---~-----~~~-----~~ 300 (435)
..++++.|+||+||||++..+...-. ....+--++....+.-++. -|.++|.. |- . .++ .-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~---~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR---EKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH---hcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 45799999999999999998873210 0001111122222222222 24555555 21 0 000 01
Q ss_pred hhhHHHHHHHHHHhcC-CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHH
Q 037423 301 DRNNLEKLTLAVLTHL-PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEH 379 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~-~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~ 379 (435)
+-+.++..+..++..+ .++=++++|--++-.+..........++.. .++|+|.++-+-+- ++
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~--~~kpliatlHrrsr-~P-------------- 144 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLK--SGKPLIATLHRRSR-HP-------------- 144 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhc--CCCcEEEEEecccC-Ch--------------
Confidence 2234555555555431 122344567443322222232233333333 47899988876542 11
Q ss_pred HHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 380 LEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 380 ~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
....+..... ++.. .+.+|=+.++..|...+..
T Consensus 145 -~v~~ik~~~~--v~v~--lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 145 -LVQRIKKLGG--VYVF--LTPENRNRILNEILSVLKG 177 (179)
T ss_pred -HHHHhhhcCC--EEEE--EccchhhHHHHHHHHHhcc
Confidence 1222222222 2222 5666777888888887754
No 425
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.84 E-value=0.01 Score=51.66 Aligned_cols=105 Identities=14% Similarity=0.212 Sum_probs=57.8
Q ss_pred EEecCCCCChhhHHHHhhCCCCcccc-CCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 241 CLVGAPNVGKSSLVRVISTGKPEVCN-YPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 241 ~~~G~~~~GKssl~~~l~~~~~~v~~-~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
..-|.+|+|||++.-.+...-...+. .-....|.....+ ...++++|||+.... .....+.+. |.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~~----------~~~~~l~~a-D~ 69 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGISD----------NVLDFFLAA-DE 69 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCCH----------HHHHHHHhC-Ce
Confidence 34467899999988776532100000 0000011111111 157899999986432 123344444 78
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
++++++++. .+..+....++.+.......++.+|+|+++-
T Consensus 70 vviv~~~~~---~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 70 VIVVTTPEP---TSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred EEEEcCCCh---hHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999988762 3444444456666554445678899999873
No 426
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.79 E-value=0.001 Score=69.16 Aligned_cols=48 Identities=25% Similarity=0.487 Sum_probs=40.0
Q ss_pred HHHHHHHhchh----HHHhhhcCCC---------cccchHHHHHhhhhcCC-----CCcHHHHHHH
Q 037423 120 LDALMKELAVP----LRDYVANFPN---------RKCLHPYERSLTELTLG-----DGNYEKVLKN 167 (435)
Q Consensus 120 l~~~~~~L~~~----L~~~l~~fp~---------~~~L~~f~~~l~e~~~~-----~~~y~~~L~~ 167 (435)
||+|++||+.. |++||..|.. .++|+.++..++++... .|+|+++...
T Consensus 245 LDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 245 LDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred ecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhH
Confidence 79999999976 9999998874 48999999999998876 4778777654
No 427
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.69 E-value=0.0055 Score=55.65 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=29.5
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
|+|++|+|+... .+..+.. +.+.+.-...++|+|+|+||+|+.+..
T Consensus 1 DvVl~VvDar~p--~~~~~~~-i~~~~~l~~~~kp~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDP--LGCRCPQ-VEEAVLQAGGNKKLVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCC--CCCCCHH-HHHHHHhccCCCCEEEEEehhhcCCHH
Confidence 689999998743 3333322 333321111368999999999997643
No 428
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.53 E-value=0.053 Score=55.49 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=78.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------------C---ccccCCce---eeeee-----EEEEEeC---CceEEE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------------P---EVCNYPFT---TRGIL-----MGHINLG---YQNFQI 288 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------------~---~v~~~~~t---T~~~~-----~~~~~~~---~~~~~l 288 (435)
....++++|+..+|||||+++|..-- . ..++-+|. |..+. ...+.++ ..++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 34689999999999999999987310 0 11112222 22111 1112222 256789
Q ss_pred EeCCCCCCCCchhh-----------------hHHHHHH----HHHH-hcCCcEEEEEEeCCCCCCCCHHHH----HHHHH
Q 037423 289 TDTPGLLQRRDEDR-----------------NNLEKLT----LAVL-THLPTAILFVHDLSGECGTSPSDQ----FTIYK 342 (435)
Q Consensus 289 iDTpG~~~~~~~~~-----------------~~ie~~~----~~~l-~~~~d~il~ViD~s~~~g~s~~~~----~~l~~ 342 (435)
+|+-|+.-...... -.++..+ .+.+ .|+.-++++-.|.|-. ....++. .....
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~-dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSIT-DIPRENYVEAEERVIE 174 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCcc-CCChHHHHHHHHHHHH
Confidence 99988643211100 0111111 1222 2333345555665521 2222222 24677
Q ss_pred HHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCC
Q 037423 343 EIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMN 400 (435)
Q Consensus 343 ~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~ 400 (435)
+|++. ++|+|+++|=.+=...+ ......+....++.|++++++..
T Consensus 175 ELk~i--gKPFvillNs~~P~s~e-----------t~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 175 ELKEI--GKPFVILLNSTKPYSEE-----------TQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHh--CCCEEEEEeCCCCCCHH-----------HHHHHHHHHHHhCCcEEEeehHH
Confidence 88887 89999999987633221 11112233445568899888753
No 429
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.43 E-value=0.0012 Score=72.29 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
.++-.++++|++|+|||||++.+++..
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 577899999999999999999999753
No 430
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.31 E-value=0.019 Score=57.39 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.6
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
|..++-|.=|+||||++|.++..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~ 24 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLAN 24 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhc
Confidence 45688899999999999999853
No 431
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.30 E-value=0.021 Score=47.38 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=54.2
Q ss_pred EEEe-cCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 240 LCLV-GAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 240 v~~~-G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
++++ +..|+||||+...|...-.......-.-.|.... .+..++++|||+.... .....+.. +|
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~----~~~D~IIiDtpp~~~~----------~~~~~l~~-aD 66 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ----FGDDYVVVDLGRSLDE----------VSLAALDQ-AD 66 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC----CCCCEEEEeCCCCcCH----------HHHHHHHH-cC
Confidence 3444 4588999998877653211100000000010000 1127899999987542 12233333 47
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEec
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSK 359 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK 359 (435)
.++++++++. .+......+++.+.+... ...+.+|+|+
T Consensus 67 ~vlvvv~~~~---~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 67 RVFLVTQQDL---PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred eEEEEecCCh---HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7888888763 355555556666665421 2467788875
No 432
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.26 E-value=0.028 Score=56.47 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=83.2
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHH--------HHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSD--------QFTIY 341 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~--------~~~l~ 341 (435)
.|.++....+.+.+.++.++|.+|++.. +.. ....... .++|+||+++|+-+....+| -..++
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRse----RrK----WihcFe~-v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF 251 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSE----RKK----WIHCFED-VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLF 251 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHH----hhh----HHHhhcC-CCEEEEEEehhhhhhhcccccchhHHHHHHHHH
Confidence 4677888888999999999999997532 111 1223333 48899999999754333322 22456
Q ss_pred HHHHHh--cCCCcEEEEEeccCCCCCCCc----cccch------hhhHHHH----HHHhhhhc--CCCcEEEcccCCCCC
Q 037423 342 KEIKER--FSDHIWLDVVSKCDLLQTSPV----AYVTE------DEDSEHL----EMASYRKM--GPDGAIRVSVMNEEG 403 (435)
Q Consensus 342 ~~l~~~--~~~~piIvV~NK~Dl~~~~~~----~~~~~------~~~~~~~----~~~~~~~~--~~~~~i~vSA~~g~G 403 (435)
+.+... |.+.++|+.+||.||..+.-. ...+. ....... .+...... ...-+..+.|..-.+
T Consensus 252 ~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~n 331 (354)
T KOG0082|consen 252 ESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQN 331 (354)
T ss_pred HHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHH
Confidence 666542 567899999999999754210 00000 0000000 11111111 122234557778888
Q ss_pred HHHHHHHHHHHHhcc
Q 037423 404 LNELKDRVYQMLVGQ 418 (435)
Q Consensus 404 I~eL~~~i~~~l~~~ 418 (435)
|+.+++.+.+.+...
T Consensus 332 v~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 332 VQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877554
No 433
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.22 E-value=0.021 Score=59.57 Aligned_cols=160 Identities=17% Similarity=0.082 Sum_probs=91.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+++++|..++|||.|+.+++.....+...|-..+.-....+.....-+.+.|-.|..+ ..+...
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-------------aQft~w 95 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-------------AQFCQW 95 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-------------hhhhhh
Confidence 3567999999999999999998876554333332222222222222233455667776322 111222
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.|++|||+...+ -.+++.+..++..+.... ...|+++|+++ |......... ..+........+.....+
T Consensus 96 -vdavIfvf~~~d--~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtq-d~iS~~~~rv-----~~da~~r~l~~~~krcsy 166 (749)
T KOG0705|consen 96 -VDAVVFVFSVED--EQSFQAVQALAHEMSSYRNISDLPLILVGTQ-DHISAKRPRV-----ITDDRARQLSAQMKRCSY 166 (749)
T ss_pred -ccceEEEEEecc--ccCHHHHHHHHhhcccccccccchHHhhcCc-chhhcccccc-----cchHHHHHHHHhcCccce
Confidence 278899988763 356666665555554321 34677777776 3333221110 011111222233334578
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++.+|.+|.+++.+|+.++.....
T Consensus 167 ~et~atyGlnv~rvf~~~~~k~i~ 190 (749)
T KOG0705|consen 167 YETCATYGLNVERVFQEVAQKIVQ 190 (749)
T ss_pred eecchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999988876543
No 434
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.98 E-value=0.0024 Score=69.75 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 56778999999999999999999875
No 435
>PRK13695 putative NTPase; Provisional
Probab=95.85 E-value=0.15 Score=45.90 Aligned_cols=21 Identities=38% Similarity=0.688 Sum_probs=18.6
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
+++++|.+|+|||||+..+.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998653
No 436
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.77 E-value=0.072 Score=52.34 Aligned_cols=83 Identities=19% Similarity=0.067 Sum_probs=49.7
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccC
Q 037423 320 ILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVM 399 (435)
Q Consensus 320 il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~ 399 (435)
+++|+.+..+ .++..-+...+-.+.. .+..-++|+||+||.+..... . ..........+.+++.+|++
T Consensus 83 ~iiIvs~~~P-~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~-------~--~~~~~~y~~~gy~v~~~s~~ 150 (301)
T COG1162 83 AIIVVSLVDP-DFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAA-------V--KELLREYEDIGYPVLFVSAK 150 (301)
T ss_pred EEEEEeccCC-CCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHH-------H--HHHHHHHHhCCeeEEEecCc
Confidence 4444555432 3444444333322222 366667889999999765211 0 12222333334589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 037423 400 NEEGLNELKDRVYQM 414 (435)
Q Consensus 400 ~g~GI~eL~~~i~~~ 414 (435)
++.|+++|.+.+...
T Consensus 151 ~~~~~~~l~~~l~~~ 165 (301)
T COG1162 151 NGDGLEELAELLAGK 165 (301)
T ss_pred CcccHHHHHHHhcCC
Confidence 999999999887653
No 437
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.72 E-value=0.076 Score=47.53 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=40.8
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
.++++|||+.... .....+. .+|.++++++++. .+..+...+++.+... ....+.+|+|++|-..
T Consensus 64 d~viiD~p~~~~~----------~~~~~l~-~ad~viiv~~~~~---~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER----------GFITAIA-PADEALLVTTPEI---SSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH----------HHHHHHH-hCCcEEEEeCCCc---chHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 7899999986432 1223333 3477888888763 3455555556666553 2245678999998643
No 438
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.0065 Score=55.37 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDT 291 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDT 291 (435)
.+..+++.|++|+||||+++.|+......-....||+....+. .+|.+|.+++.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gE--v~G~dY~Fvs~ 56 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGE--VDGVDYFFVTE 56 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCC--cCCceeEeCCH
Confidence 3566899999999999999999866532223445777766554 35666766543
No 439
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.084 Score=55.50 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.|.+|+++|.+|+||||+++.|++
T Consensus 376 ~kGekVaIvG~nGsGKSTilr~Llr 400 (591)
T KOG0057|consen 376 PKGEKVAIVGSNGSGKSTILRLLLR 400 (591)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 6788999999999999999999874
No 440
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=95.61 E-value=0.017 Score=59.73 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccc-cCC---------------ceeeeeeEEE--EEe--------------CC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVC-NYP---------------FTTRGILMGH--INL--------------GY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~-~~~---------------~tT~~~~~~~--~~~--------------~~ 283 (435)
+-+.+.++.+...|||||..+|....-+++ ... +.|....... ++. ++
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 345678888999999999998863221111 111 1121111111 111 13
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
.-+.+||.||+.+...+ ...+++ ..|+.++|+|.- +|.-.+....+.+.+.++ -+| ++|+||+|-.
T Consensus 98 FLiNLIDSPGHVDFSSE--------VTAALR-VTDGALVVVDcv--~GvCVQTETVLrQA~~ER--IkP-vlv~NK~DRA 163 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSE--------VTAALR-VTDGALVVVDCV--SGVCVQTETVLRQAIAER--IKP-VLVMNKMDRA 163 (842)
T ss_pred eeEEeccCCCcccchhh--------hhheeE-eccCcEEEEEcc--CceEechHHHHHHHHHhh--ccc-eEEeehhhHH
Confidence 45689999999987543 222333 347788888866 455555555466677775 344 4789999954
No 441
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.59 E-value=0.06 Score=42.43 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=41.2
Q ss_pred EEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcE
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTA 319 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~ 319 (435)
+++.|..|+||||+...++..-.. ..+. ...+ + .+.++|+||........ .......++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-~g~~-------v~~~--~--d~iivD~~~~~~~~~~~--------~~~~~~~~~~ 61 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-RGKR-------VLLI--D--DYVLIDTPPGLGLLVLL--------CLLALLAADL 61 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCe-------EEEE--C--CEEEEeCCCCccchhhh--------hhhhhhhCCE
Confidence 678899999999999988643111 0110 1111 1 77999999987543100 1122233477
Q ss_pred EEEEEeCCC
Q 037423 320 ILFVHDLSG 328 (435)
Q Consensus 320 il~ViD~s~ 328 (435)
++++++.+.
T Consensus 62 vi~v~~~~~ 70 (99)
T cd01983 62 VIIVTTPEA 70 (99)
T ss_pred EEEecCCch
Confidence 888888763
No 442
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.57 E-value=0.059 Score=53.72 Aligned_cols=25 Identities=36% Similarity=0.623 Sum_probs=22.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..+|+++++|+.++||||+.+.|++
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHH
Confidence 5699999999999999999998874
No 443
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.53 E-value=0.042 Score=54.86 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
-|..++.|.-|+|||||+|.++.
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~ 26 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHh
Confidence 46789999999999999999984
No 444
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.47 E-value=0.013 Score=53.93 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=35.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEe
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITD 290 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liD 290 (435)
++..++++|++|+|||||++.|+.... .....+.||+....+. .+|..+.+++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE--~~G~dY~fvs 56 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD--EEGKTYFFLT 56 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC--CCCceeEeCC
Confidence 456789999999999999999986542 2233456777655443 2455555553
No 445
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.42 E-value=0.11 Score=42.43 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=38.5
Q ss_pred EEEec-CCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 240 LCLVG-APNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 240 v~~~G-~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
+++.| ..|+||||+...+...-.. ...+..-.| .+. ...++++|||+.... .....+.. +|
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d-----~d~-~~d~viiD~p~~~~~----------~~~~~l~~-ad 63 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLID-----LDP-QYDYIIIDTPPSLGL----------LTRNALAA-AD 63 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEe-----CCC-CCCEEEEeCcCCCCH----------HHHHHHHH-CC
Confidence 55666 5789999998877532111 000000001 000 156899999997532 12223333 47
Q ss_pred EEEEEEeCC
Q 037423 319 AILFVHDLS 327 (435)
Q Consensus 319 ~il~ViD~s 327 (435)
.++++++.+
T Consensus 64 ~viv~~~~~ 72 (104)
T cd02042 64 LVLIPVQPS 72 (104)
T ss_pred EEEEeccCC
Confidence 888888876
No 446
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.41 E-value=0.11 Score=43.86 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..+.+.|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999764
No 447
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.22 E-value=0.2 Score=45.15 Aligned_cols=67 Identities=21% Similarity=0.114 Sum_probs=45.5
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
+...++++|||+.... .....+.. +|.+++++.++. .+..+...+.+.+... +.|+.+|+||+|
T Consensus 91 ~~~d~viiDtpp~~~~----------~~~~~l~~-aD~vliv~~~~~---~~~~~~~~~~~~l~~~--~~~~~vV~N~~~ 154 (179)
T cd03110 91 EGAELIIIDGPPGIGC----------PVIASLTG-ADAALLVTEPTP---SGLHDLERAVELVRHF--GIPVGVVINKYD 154 (179)
T ss_pred cCCCEEEEECcCCCcH----------HHHHHHHc-CCEEEEEecCCc---ccHHHHHHHHHHHHHc--CCCEEEEEeCCC
Confidence 4568899999976431 12233433 488999988763 3566666666666654 678899999998
Q ss_pred CCC
Q 037423 362 LLQ 364 (435)
Q Consensus 362 l~~ 364 (435)
...
T Consensus 155 ~~~ 157 (179)
T cd03110 155 LND 157 (179)
T ss_pred CCc
Confidence 643
No 448
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.05 E-value=0.063 Score=55.86 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh
Q 037423 305 LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS 384 (435)
Q Consensus 305 ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
+..+....++.. |+|+.++|+.+.--+-..+ +.+.+++..+.+..++++||.||.... .......
T Consensus 164 ~WRQLWRVlErS-DivvqIVDARnPllfr~~d---Le~Yvke~d~~K~~~LLvNKaDLl~~~-----------qr~aWa~ 228 (562)
T KOG1424|consen 164 IWRQLWRVLERS-DIVVQIVDARNPLLFRSPD---LEDYVKEVDPSKANVLLVNKADLLPPE-----------QRVAWAE 228 (562)
T ss_pred HHHHHHHHHhhc-ceEEEEeecCCccccCChh---HHHHHhccccccceEEEEehhhcCCHH-----------HHHHHHH
Confidence 344555666665 8999999998653333334 445566654568899999999999875 2234445
Q ss_pred hhhcCCCcEEEcccCC
Q 037423 385 YRKMGPDGAIRVSVMN 400 (435)
Q Consensus 385 ~~~~~~~~~i~vSA~~ 400 (435)
|....++++++.||..
T Consensus 229 YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 229 YFRQNNIPVVFFSALA 244 (562)
T ss_pred HHHhcCceEEEEeccc
Confidence 5555568899999987
No 449
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.00 E-value=0.76 Score=48.59 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+...+.+.|++||||||.+.-|+..
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLske 133 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKE 133 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHh
Confidence 4557899999999999999988754
No 450
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.95 E-value=0.67 Score=42.21 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|++|+|||||++.+++-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 36778999999999999999999875
No 451
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.91 E-value=0.026 Score=49.15 Aligned_cols=52 Identities=21% Similarity=0.248 Sum_probs=33.0
Q ss_pred EEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEEeCCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQITDTPG 293 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG 293 (435)
++++|++|+||||+++.|.+.-. .....+.||+....+. .++..+.++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHH
Confidence 68999999999999999986521 1223334565544332 3455666666433
No 452
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.91 E-value=0.091 Score=53.16 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=34.0
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.|+||.|+|+.++.|....+...+ +.....++..|+|+||+||+..+
T Consensus 147 sDVVleVlDARDPlgtR~~~vE~~---V~~~~gnKkLILVLNK~DLVPrE 193 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGTRCPEVEEA---VLQAHGNKKLILVLNKIDLVPRE 193 (435)
T ss_pred hheEEEeeeccCCCCCCChhHHHH---HHhccCCceEEEEeehhccCCHH
Confidence 499999999997766544444433 22222358999999999999875
No 453
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.85 E-value=0.17 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|++|+||||++..|+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999874
No 454
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.80 E-value=0.027 Score=52.54 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=25.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeee
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRG 273 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~ 273 (435)
.+..++++|++|+||||+++.|..... ..-..+.||+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~ 50 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRP 50 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCC
Confidence 455678999999999999999975432 11233445544
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.78 E-value=0.034 Score=50.25 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=32.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPG 293 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG 293 (435)
..++++|++|+||||+++.|.+... .....+.+|+....+. .++..+.++++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~ 56 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEE 56 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHH
Confidence 4689999999999999999987432 1222233555443332 2344555555443
No 456
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.78 E-value=0.03 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..+.++++|++|+|||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3567899999999999999998754
No 457
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.75 E-value=0.025 Score=50.67 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.0
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+.++|++|+|||||++++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 458
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.75 E-value=0.022 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.6
Q ss_pred EEEEecCCCCChhhHHHHhhCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.|++.|.||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999753
No 459
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.70 E-value=0.033 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+|||||++.+.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5678999999999999999999865
No 460
>PRK08181 transposase; Validated
Probab=94.70 E-value=0.089 Score=51.29 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|++|+|||.|..++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHH
Confidence 455799999999999999999864
No 461
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.69 E-value=0.027 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++--|+++|++|||||||+|.+++-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999864
No 462
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.66 E-value=0.16 Score=50.81 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=50.7
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|+|+.|+|+....+ ..... +..+.. ++|.++|+||+||.+... ...+...+....+...+.+
T Consensus 35 ~d~vvevvDar~P~~--s~~~~--l~~~v~---~k~~i~vlNK~DL~~~~~----------~~~W~~~~~~~~~~~~~~v 97 (322)
T COG1161 35 VDVVVEVVDARDPLG--TRNPE--LERIVK---EKPKLLVLNKADLAPKEV----------TKKWKKYFKKEEGIKPIFV 97 (322)
T ss_pred CCEEEEEEecccccc--ccCcc--HHHHHc---cCCcEEEEehhhcCCHHH----------HHHHHHHHHhcCCCccEEE
Confidence 489999999985533 33221 222222 567799999999997641 1122222333334567899
Q ss_pred ccCCCCCHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~ 413 (435)
|++.+.|...+...+..
T Consensus 98 ~~~~~~~~~~i~~~~~~ 114 (322)
T COG1161 98 SAKSRQGGKKIRKALEK 114 (322)
T ss_pred EeecccCccchHHHHHH
Confidence 99999888888754443
No 463
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.65 E-value=0.14 Score=50.33 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCC----------------C
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQR----------------R 298 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~----------------~ 298 (435)
.+.+.+.++|++|.|||++++++........+. + .....+..+.+|.-.+. +
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-----~-------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-----D-------AERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-----C-------CccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 456789999999999999999998754322111 0 01235667777654321 1
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCC-CCCCHHHHHHHHHHHHHhc--CCCcEEEEEec
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGE-CGTSPSDQFTIYKEIKERF--SDHIWLDVVSK 359 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~-~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK 359 (435)
.......+.+....+... .+=++|+|=-.. ..-+...+...++.++... -..|+|.|+++
T Consensus 127 ~~~~~~~~~~~~~llr~~-~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRL-GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 111122334444445444 556778883321 0113444554555555442 25899999876
No 464
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.63 E-value=0.029 Score=48.17 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
.++-.++++|++|+|||||++.+++..
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 357789999999999999999998753
No 465
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.57 E-value=0.088 Score=44.36 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEecCCCCChhhHHHHhhCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~ 260 (435)
|++.|+||+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 679999999999999999864
No 466
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.39 E-value=0.026 Score=61.56 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
..-|.|+++|..++||||.++.+.+..
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~ 53 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFV 53 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccc
Confidence 356889999999999999999998754
No 467
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.07 E-value=0.043 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+..++++|++|+|||||++++++
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999999999986
No 468
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.01 E-value=0.058 Score=40.34 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
.+...++.|++|+||||++.++.
T Consensus 22 ~g~~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999999875
No 469
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=93.98 E-value=0.038 Score=56.73 Aligned_cols=137 Identities=20% Similarity=0.261 Sum_probs=77.6
Q ss_pred eeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCC-------C-CHHHHHHH
Q 037423 270 TTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECG-------T-SPSDQFTI 340 (435)
Q Consensus 270 tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g-------~-s~~~~~~l 340 (435)
.|.++....+.+ ++..+.++|..|....... ....+.. .++|+||+++++-+- . -..+-..+
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkK--------W~~~F~~-v~~vif~vsls~ydq~~~ed~~~nrl~esl~l 291 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKK--------WIHCFED-VTAVIFVVSLSEYDQTLYEDPNTNRLHESLNL 291 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGG--------GGGGGTT-ESEEEEEEEGGGGGSBESSSTTSBHHHHHHHH
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhh--------HHHHhcc-ccEEEEeecccchhhhhcccchHHHHHHHHHH
Confidence 567777888888 8999999999999542211 1122333 378999999874221 1 12233456
Q ss_pred HHHHHH--hcCCCcEEEEEeccCCCCCC----C-ccccchhh--------hHHHHHHH----hhhhc----CCCcEEEcc
Q 037423 341 YKEIKE--RFSDHIWLDVVSKCDLLQTS----P-VAYVTEDE--------DSEHLEMA----SYRKM----GPDGAIRVS 397 (435)
Q Consensus 341 ~~~l~~--~~~~~piIvV~NK~Dl~~~~----~-~~~~~~~~--------~~~~~~~~----~~~~~----~~~~~i~vS 397 (435)
+..+.. .+.+.|+|+++||.|+.... . ....+.+. ......+. ..... ...-+..++
T Consensus 292 F~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~ 371 (389)
T PF00503_consen 292 FESICNNPWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTC 371 (389)
T ss_dssp HHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEES
T ss_pred HHHHHhCcccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEee
Confidence 777665 35678999999999975321 1 11111111 11111111 11111 112345778
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 037423 398 VMNEEGLNELKDRVYQML 415 (435)
Q Consensus 398 A~~g~GI~eL~~~i~~~l 415 (435)
|.....+..+++.+.+.+
T Consensus 372 a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 372 ATDTENIRKVFNAVKDII 389 (389)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHhcCcC
Confidence 888888888888887653
No 470
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=93.89 E-value=0.44 Score=46.72 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+-|.-.+.|.-|+|||||+|.++.
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHc
Confidence 3456678999999999999999874
No 471
>PF05729 NACHT: NACHT domain
Probab=93.84 E-value=0.23 Score=43.43 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+++.|.+|+|||+++..++.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 578999999999999998874
No 472
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.79 E-value=0.042 Score=47.36 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=18.5
Q ss_pred EEEecCCCCChhhHHHHhhC
Q 037423 240 LCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~ 259 (435)
|+++|+||+||||++..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 473
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.78 E-value=0.56 Score=41.93 Aligned_cols=67 Identities=12% Similarity=0.017 Sum_probs=42.7
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEec
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSK 359 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK 359 (435)
++..++++|||+.... .....+. ..+|.+++|..++ ..+..+...+.+.+.+. +.+ .-+|+|+
T Consensus 66 ~~yD~VIiD~pp~~~~----------~~~~~~~~~~ad~viiV~~p~---~~s~~~~~~~~~~l~~~--~~~~~gvv~N~ 130 (169)
T cd02037 66 GELDYLVIDMPPGTGD----------EHLTLAQSLPIDGAVIVTTPQ---EVALDDVRKAIDMFKKV--NIPILGVVENM 130 (169)
T ss_pred CCCCEEEEeCCCCCcH----------HHHHHHhccCCCeEEEEECCc---hhhHHHHHHHHHHHHhc--CCCeEEEEEcC
Confidence 3577899999987431 1122221 3347788888765 35666666677777765 444 4578999
Q ss_pred cCCC
Q 037423 360 CDLL 363 (435)
Q Consensus 360 ~Dl~ 363 (435)
.+-.
T Consensus 131 ~~~~ 134 (169)
T cd02037 131 SYFV 134 (169)
T ss_pred Cccc
Confidence 9854
No 474
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=93.76 E-value=0.12 Score=50.14 Aligned_cols=61 Identities=25% Similarity=0.194 Sum_probs=40.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC--Ccccc-CCceeeeeeEEEEEe---CCceEEEEeCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK--PEVCN-YPFTTRGILMGHINL---GYQNFQITDTPGLLQ 296 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~--~~v~~-~~~tT~~~~~~~~~~---~~~~~~liDTpG~~~ 296 (435)
+-..|.++|...+|||.|+|.|++.. +.+++ ....|.++-...... ++..+.++||.|+.+
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 44568999999999999999998642 33333 224565544322211 346789999999977
No 475
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.73 E-value=0.055 Score=50.67 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++++-+-
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 46789999999999999999998754
No 476
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.59 E-value=0.06 Score=50.28 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 46788999999999999999999875
No 477
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=93.58 E-value=0.92 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++++|+.++|||||...|++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHH
Confidence 4567899999999999999887763
No 478
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.55 E-value=0.062 Score=50.82 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||+|.+.+-
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46778999999999999999988753
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.52 E-value=0.065 Score=44.75 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=21.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
+..++++|++|+|||+++..++..-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 4578999999999999999998653
No 480
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.48 E-value=0.065 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|++|+|||||++.+++-
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999999875
No 481
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.46 E-value=0.064 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 482
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.45 E-value=0.051 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+..++++|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 4667899999999999999999875
No 483
>PRK08118 topology modulation protein; Reviewed
Probab=93.43 E-value=0.059 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+|+++|++|+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 484
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.43 E-value=0.066 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999999875
No 485
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.39 E-value=0.069 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
.++..++++|++|+|||||++.+++..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999753
No 486
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.38 E-value=0.066 Score=48.91 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+.+-+++++|++|+|||||+|.+.+-
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhc
Confidence 56788999999999999999999864
No 487
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.29 E-value=0.074 Score=48.62 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999875
No 488
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.29 E-value=0.072 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999875
No 489
>PRK07261 topology modulation protein; Provisional
Probab=93.27 E-value=0.062 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
+|+++|.+|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 490
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.27 E-value=0.073 Score=49.31 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 491
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.25 E-value=0.29 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..+++.|..|+|||||++.+++.
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998854
No 492
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.19 E-value=0.077 Score=49.31 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999975
No 493
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.17 E-value=0.075 Score=49.14 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.16 E-value=0.077 Score=49.35 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.13 E-value=0.081 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++..++++|++|+|||||++.++.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4678999999999999999998864
No 496
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.08 Score=49.30 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999875
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.11 E-value=0.086 Score=46.17 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
.++-.++++|++|+|||||++.+++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467789999999999999999998753
No 498
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.10 E-value=0.08 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|++|+|||||++.+++.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999999875
No 499
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.09 E-value=0.075 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
+.+.++++|.||+||||+++.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999987
No 500
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.06 E-value=0.073 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++ .++++|++|+|||||++.+++-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 46 8999999999999999999874
Done!