Query 037423
Match_columns 435
No_of_seqs 558 out of 3276
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e87_A Hypothetical protein PH 100.0 2.1E-42 7.2E-47 347.9 33.9 337 74-421 3-340 (357)
2 2qu8_A Putative nucleolar GTP- 99.9 9.3E-24 3.2E-28 198.0 21.1 188 225-418 17-206 (228)
3 2hjg_A GTP-binding protein ENG 99.9 3.8E-23 1.3E-27 213.0 13.6 218 198-426 133-358 (436)
4 4dcu_A GTP-binding protein ENG 99.9 5.7E-23 1.9E-27 212.8 10.8 219 196-425 151-377 (456)
5 3iev_A GTP-binding protein ERA 99.9 1.6E-21 5.3E-26 192.0 19.5 179 235-425 8-190 (308)
6 1mky_A Probable GTP-binding pr 99.9 5.9E-22 2E-26 204.2 15.8 221 196-426 132-364 (439)
7 2gj8_A MNME, tRNA modification 99.9 2.2E-21 7.6E-26 174.0 14.9 162 236-417 3-166 (172)
8 2wji_A Ferrous iron transport 99.9 5.7E-21 1.9E-25 169.8 16.0 161 237-416 3-164 (165)
9 3tw8_B RAS-related protein RAB 99.9 2.6E-21 9E-26 172.6 13.6 165 236-420 8-174 (181)
10 1wf3_A GTP-binding protein; GT 99.9 1.1E-20 3.7E-25 185.4 18.1 169 237-420 7-176 (301)
11 3tkl_A RAS-related protein RAB 99.9 1.3E-20 4.6E-25 170.9 16.7 166 236-421 15-183 (196)
12 2dyk_A GTP-binding protein; GT 99.9 1.2E-20 4.1E-25 165.3 15.7 158 238-415 2-160 (161)
13 4dhe_A Probable GTP-binding pr 99.9 7.5E-21 2.6E-25 176.6 15.1 176 235-418 27-212 (223)
14 2g6b_A RAS-related protein RAB 99.8 1.6E-20 5.6E-25 167.7 15.2 167 236-422 9-179 (180)
15 1svi_A GTP-binding protein YSX 99.8 1.2E-19 4E-24 164.7 20.1 167 235-416 21-194 (195)
16 1mky_A Probable GTP-binding pr 99.8 3.3E-20 1.1E-24 191.2 17.2 164 238-418 2-167 (439)
17 3iby_A Ferrous iron transport 99.8 1.6E-20 5.4E-25 180.0 13.7 160 238-414 2-164 (256)
18 4dkx_A RAS-related protein RAB 99.8 2.2E-20 7.4E-25 174.7 14.2 162 236-417 12-176 (216)
19 2lkc_A Translation initiation 99.8 1.6E-20 5.5E-25 167.5 12.7 168 234-420 5-174 (178)
20 3q85_A GTP-binding protein REM 99.8 4.4E-20 1.5E-24 163.3 14.9 161 238-417 3-167 (169)
21 1g16_A RAS-related protein SEC 99.8 3.2E-20 1.1E-24 163.9 13.9 161 237-418 3-166 (170)
22 3a1s_A Iron(II) transport prot 99.8 4.6E-20 1.6E-24 177.0 16.0 161 237-416 5-166 (258)
23 4dsu_A GTPase KRAS, isoform 2B 99.8 4.8E-20 1.6E-24 165.8 15.1 165 237-423 4-172 (189)
24 1wms_A RAB-9, RAB9, RAS-relate 99.8 7E-20 2.4E-24 163.2 16.1 161 236-417 6-174 (177)
25 2bme_A RAB4A, RAS-related prot 99.8 4.5E-20 1.5E-24 166.0 14.7 163 236-418 9-174 (186)
26 2nzj_A GTP-binding protein REM 99.8 4.1E-20 1.4E-24 164.1 14.2 163 236-418 3-170 (175)
27 2il1_A RAB12; G-protein, GDP, 99.8 6.4E-20 2.2E-24 167.0 15.6 162 236-417 25-190 (192)
28 3pqc_A Probable GTP-binding pr 99.8 4.5E-19 1.5E-23 160.2 21.0 168 235-417 21-194 (195)
29 4bas_A ADP-ribosylation factor 99.8 4.8E-20 1.7E-24 167.5 14.7 170 235-421 15-193 (199)
30 1z0f_A RAB14, member RAS oncog 99.8 9.9E-20 3.4E-24 162.1 16.4 161 236-416 14-177 (179)
31 1u8z_A RAS-related protein RAL 99.8 7E-20 2.4E-24 160.9 15.1 160 237-417 4-167 (168)
32 1z2a_A RAS-related protein RAB 99.8 3.3E-20 1.1E-24 163.5 12.9 162 236-417 4-167 (168)
33 3cph_A RAS-related protein SEC 99.8 6.3E-20 2.2E-24 168.8 15.3 162 236-418 19-183 (213)
34 3t5g_A GTP-binding protein RHE 99.8 5.9E-20 2E-24 164.6 14.7 168 236-424 5-176 (181)
35 3q72_A GTP-binding protein RAD 99.8 6.1E-20 2.1E-24 161.8 14.5 158 237-417 2-164 (166)
36 3clv_A RAB5 protein, putative; 99.8 1.5E-19 5.2E-24 163.9 17.4 160 236-417 6-204 (208)
37 2hxs_A RAB-26, RAS-related pro 99.8 3.6E-20 1.2E-24 165.2 12.9 163 236-418 5-174 (178)
38 3cbq_A GTP-binding protein REM 99.8 8E-20 2.7E-24 167.3 15.5 165 236-419 22-190 (195)
39 2bcg_Y Protein YP2, GTP-bindin 99.8 1E-19 3.4E-24 167.1 15.9 163 237-419 8-173 (206)
40 2hup_A RAS-related protein RAB 99.8 1.2E-19 4.2E-24 166.6 16.5 163 236-418 28-194 (201)
41 1kao_A RAP2A; GTP-binding prot 99.8 8.3E-20 2.9E-24 160.3 14.4 160 237-417 3-166 (167)
42 2bov_A RAla, RAS-related prote 99.8 1E-19 3.5E-24 166.3 15.5 162 236-418 13-178 (206)
43 2a9k_A RAS-related protein RAL 99.8 1.2E-19 4E-24 162.7 15.5 162 236-418 17-182 (187)
44 2fn4_A P23, RAS-related protei 99.8 1.7E-19 5.9E-24 160.8 16.6 164 235-419 7-174 (181)
45 2wjg_A FEOB, ferrous iron tran 99.8 1.1E-19 3.8E-24 163.8 15.4 166 236-420 6-172 (188)
46 3i8s_A Ferrous iron transport 99.8 2.5E-20 8.6E-25 180.3 11.7 165 237-418 3-170 (274)
47 1z08_A RAS-related protein RAB 99.8 7E-20 2.4E-24 161.9 13.7 162 236-417 5-169 (170)
48 2fu5_C RAS-related protein RAB 99.8 2.3E-20 8E-25 167.6 10.7 162 237-418 8-172 (183)
49 1z0j_A RAB-22, RAS-related pro 99.8 1.4E-19 4.8E-24 159.7 15.3 160 237-416 6-168 (170)
50 1zj6_A ADP-ribosylation factor 99.8 2.3E-19 7.8E-24 162.2 16.9 163 235-419 14-180 (187)
51 3bc1_A RAS-related protein RAB 99.8 1.2E-19 4.2E-24 163.5 15.1 163 237-419 11-187 (195)
52 2efe_B Small GTP-binding prote 99.8 2E-19 6.9E-24 160.8 16.2 162 236-417 11-175 (181)
53 1ek0_A Protein (GTP-binding pr 99.8 1.3E-19 4.5E-24 159.7 14.7 163 237-416 3-168 (170)
54 1c1y_A RAS-related protein RAP 99.8 2.8E-19 9.5E-24 157.3 16.7 159 237-416 3-166 (167)
55 4djt_A GTP-binding nuclear pro 99.8 9.3E-20 3.2E-24 168.8 14.3 173 236-428 10-186 (218)
56 2hjg_A GTP-binding protein ENG 99.8 2.7E-20 9.1E-25 191.7 11.6 162 237-417 3-165 (436)
57 1x3s_A RAS-related protein RAB 99.8 2.8E-19 9.6E-24 161.7 16.9 164 236-420 14-181 (195)
58 1ky3_A GTP-binding protein YPT 99.8 8.9E-20 3E-24 162.8 13.3 164 236-418 7-179 (182)
59 3b1v_A Ferrous iron uptake tra 99.8 9.7E-20 3.3E-24 176.1 14.5 161 237-417 3-164 (272)
60 1z06_A RAS-related protein RAB 99.8 1.8E-19 6.2E-24 163.1 15.4 162 236-417 19-188 (189)
61 1r2q_A RAS-related protein RAB 99.8 1.7E-19 5.8E-24 158.9 14.7 160 237-416 6-168 (170)
62 1ksh_A ARF-like protein 2; sma 99.8 2.7E-19 9.1E-24 161.2 16.3 162 235-418 16-181 (186)
63 2y8e_A RAB-protein 6, GH09086P 99.8 7.5E-20 2.6E-24 162.9 12.4 161 237-417 14-177 (179)
64 2ew1_A RAS-related protein RAB 99.8 1.2E-19 4E-24 167.3 13.9 163 236-418 25-190 (201)
65 3reg_A RHO-like small GTPase; 99.8 1.4E-19 4.7E-24 164.6 14.2 165 236-419 22-190 (194)
66 1zbd_A Rabphilin-3A; G protein 99.8 3.5E-19 1.2E-23 162.9 16.8 162 237-418 8-172 (203)
67 1r8s_A ADP-ribosylation factor 99.8 3.8E-19 1.3E-23 156.4 16.4 160 238-417 1-162 (164)
68 1upt_A ARL1, ADP-ribosylation 99.8 4.4E-19 1.5E-23 156.9 16.9 161 236-417 6-169 (171)
69 3kkq_A RAS-related protein M-R 99.8 3.8E-19 1.3E-23 159.6 16.7 164 233-417 14-182 (183)
70 2a5j_A RAS-related protein RAB 99.8 1.6E-19 5.6E-24 163.8 14.3 163 236-418 20-185 (191)
71 2gf9_A RAS-related protein RAB 99.8 2.6E-19 8.8E-24 162.1 15.0 162 237-418 22-186 (189)
72 2q3h_A RAS homolog gene family 99.8 1.7E-19 6E-24 164.7 13.8 173 235-419 18-197 (201)
73 2o52_A RAS-related protein RAB 99.8 1.3E-19 4.6E-24 166.1 13.0 163 236-418 24-189 (200)
74 2oil_A CATX-8, RAS-related pro 99.8 3.3E-19 1.1E-23 161.7 15.5 163 236-418 24-189 (193)
75 1vg8_A RAS-related protein RAB 99.8 1.4E-19 4.7E-24 165.7 13.0 162 236-418 7-176 (207)
76 2fg5_A RAB-22B, RAS-related pr 99.8 1.8E-19 6.1E-24 163.9 13.6 162 236-417 22-186 (192)
77 2h57_A ADP-ribosylation factor 99.8 2.2E-19 7.5E-24 162.7 14.1 164 235-418 19-188 (190)
78 1zd9_A ADP-ribosylation factor 99.8 3.5E-19 1.2E-23 161.4 15.3 164 235-417 20-185 (188)
79 2f7s_A C25KG, RAS-related prot 99.8 1.8E-19 6.1E-24 166.7 13.6 163 236-418 24-200 (217)
80 2ce2_X GTPase HRAS; signaling 99.8 8.6E-19 2.9E-23 153.4 17.1 158 238-417 4-165 (166)
81 2erx_A GTP-binding protein DI- 99.8 2.7E-19 9.2E-24 158.0 13.9 162 237-419 3-169 (172)
82 1fzq_A ADP-ribosylation factor 99.8 5.1E-19 1.7E-23 159.6 16.0 161 235-417 14-178 (181)
83 3cpj_B GTP-binding protein YPT 99.8 1.9E-19 6.6E-24 167.8 13.5 165 236-420 12-179 (223)
84 3k53_A Ferrous iron transport 99.8 4.2E-19 1.4E-23 171.1 16.1 165 237-420 3-169 (271)
85 2p5s_A RAS and EF-hand domain 99.8 3.9E-19 1.3E-23 162.6 14.6 169 235-417 26-197 (199)
86 2iwr_A Centaurin gamma 1; ANK 99.8 4E-19 1.4E-23 158.8 14.4 158 236-418 6-170 (178)
87 3ihw_A Centg3; RAS, centaurin, 99.8 2.2E-19 7.4E-24 162.7 12.7 160 235-419 18-182 (184)
88 3dz8_A RAS-related protein RAB 99.8 1.5E-19 5.2E-24 164.1 11.7 163 236-418 22-187 (191)
89 1xzp_A Probable tRNA modificat 99.8 2E-19 6.7E-24 187.0 14.0 161 236-416 242-404 (482)
90 1mh1_A RAC1; GTP-binding, GTPa 99.8 8.5E-20 2.9E-24 163.7 9.8 171 236-418 4-181 (186)
91 3gee_A MNME, tRNA modification 99.8 1.7E-19 5.9E-24 187.2 13.5 162 236-416 232-397 (476)
92 3con_A GTPase NRAS; structural 99.8 6.8E-19 2.3E-23 159.1 15.7 161 236-418 20-184 (190)
93 2h17_A ADP-ribosylation factor 99.8 2.7E-19 9.4E-24 160.9 13.0 158 235-414 19-180 (181)
94 2j1l_A RHO-related GTP-binding 99.8 5E-19 1.7E-23 164.1 14.4 172 236-419 33-211 (214)
95 2j0v_A RAC-like GTP-binding pr 99.8 2.6E-19 8.8E-24 165.1 12.2 174 236-422 8-185 (212)
96 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-19 4.2E-24 180.8 10.8 170 238-420 159-333 (342)
97 2b6h_A ADP-ribosylation factor 99.8 1.8E-18 6.2E-23 157.6 17.5 162 235-416 27-190 (192)
98 3c5c_A RAS-like protein 12; GD 99.8 5.7E-19 1.9E-23 160.1 14.0 159 236-416 20-185 (187)
99 4gzl_A RAS-related C3 botulinu 99.8 1.3E-19 4.5E-24 166.7 9.9 169 235-415 28-203 (204)
100 2atx_A Small GTP binding prote 99.8 9.1E-19 3.1E-23 159.0 15.3 169 236-416 17-192 (194)
101 1moz_A ARL1, ADP-ribosylation 99.8 3.6E-19 1.2E-23 159.6 12.5 161 235-417 16-180 (183)
102 1m2o_B GTP-binding protein SAR 99.8 7.5E-19 2.6E-23 159.9 14.4 158 235-414 21-189 (190)
103 1f6b_A SAR1; gtpases, N-termin 99.8 5.1E-19 1.7E-23 162.2 13.1 159 235-415 23-197 (198)
104 2atv_A RERG, RAS-like estrogen 99.8 1.1E-18 3.8E-23 159.0 15.0 160 236-417 27-191 (196)
105 3oes_A GTPase rhebl1; small GT 99.8 2.8E-19 9.7E-24 163.7 10.8 165 236-421 23-191 (201)
106 3gj0_A GTP-binding nuclear pro 99.8 6.3E-20 2.2E-24 170.6 6.5 162 236-419 14-177 (221)
107 2yc2_C IFT27, small RAB-relate 99.8 3.1E-19 1E-23 163.2 10.7 161 236-417 19-192 (208)
108 4dcu_A GTP-binding protein ENG 99.8 3.5E-19 1.2E-23 184.3 12.4 164 235-417 21-185 (456)
109 3l0i_B RAS-related protein RAB 99.8 2.2E-20 7.4E-25 170.9 2.8 162 236-417 32-196 (199)
110 2x77_A ADP-ribosylation factor 99.8 1.5E-18 5.2E-23 156.8 14.4 164 235-418 20-185 (189)
111 3bwd_D RAC-like GTP-binding pr 99.8 2.3E-19 7.8E-24 160.6 8.5 169 236-416 7-180 (182)
112 3q3j_B RHO-related GTP-binding 99.8 9.2E-19 3.1E-23 162.5 12.9 175 235-421 25-207 (214)
113 2gco_A H9, RHO-related GTP-bin 99.8 1.4E-18 4.8E-23 159.2 14.0 169 236-416 24-199 (201)
114 2fv8_A H6, RHO-related GTP-bin 99.8 2.1E-18 7.3E-23 158.7 15.1 170 236-417 24-200 (207)
115 2gf0_A GTP-binding protein DI- 99.8 1.5E-18 5.2E-23 157.6 14.0 165 236-422 7-176 (199)
116 3t1o_A Gliding protein MGLA; G 99.8 1.2E-18 4E-23 157.6 12.8 162 236-419 13-194 (198)
117 2g3y_A GTP-binding protein GEM 99.8 3.1E-18 1.1E-22 159.3 15.5 163 236-417 36-203 (211)
118 1ega_A Protein (GTP-binding pr 99.8 1.2E-18 4E-23 170.9 11.3 165 236-419 7-177 (301)
119 2cxx_A Probable GTP-binding pr 99.8 4.7E-18 1.6E-22 153.0 13.4 162 238-419 2-186 (190)
120 2qtf_A Protein HFLX, GTP-bindi 99.8 1.6E-17 5.6E-22 166.9 18.7 173 237-418 179-355 (364)
121 3lxx_A GTPase IMAP family memb 99.8 1.4E-17 4.9E-22 157.1 17.2 184 236-426 28-223 (239)
122 3lxw_A GTPase IMAP family memb 99.8 5.7E-18 1.9E-22 161.3 13.9 181 235-424 19-215 (247)
123 3lvq_E ARF-GAP with SH3 domain 99.8 6.4E-18 2.2E-22 176.5 15.3 172 236-429 321-496 (497)
124 2cjw_A GTP-binding protein GEM 99.8 1.7E-17 5.6E-22 151.4 16.1 163 236-417 5-172 (192)
125 1m7b_A RND3/RHOE small GTP-bin 99.7 5E-18 1.7E-22 153.1 12.0 169 236-416 6-182 (184)
126 2fh5_B SR-beta, signal recogni 99.7 8.2E-18 2.8E-22 155.2 13.7 166 236-414 6-213 (214)
127 3r7w_A Gtpase1, GTP-binding pr 99.7 1.1E-17 3.6E-22 164.4 14.7 170 236-415 2-179 (307)
128 3llu_A RAS-related GTP-binding 99.7 1.5E-17 5E-22 151.8 14.7 171 235-415 18-195 (196)
129 3geh_A MNME, tRNA modification 99.7 1.8E-18 6E-23 179.0 9.5 159 236-418 223-385 (462)
130 3qq5_A Small GTP-binding prote 99.7 5.7E-18 2E-22 173.1 13.2 163 236-418 33-197 (423)
131 3o47_A ADP-ribosylation factor 99.7 2.4E-17 8.2E-22 163.5 16.9 161 236-417 164-327 (329)
132 3th5_A RAS-related C3 botulinu 99.6 1.2E-19 4E-24 166.5 0.0 169 235-415 28-203 (204)
133 1gwn_A RHO-related GTP-binding 99.7 8.2E-18 2.8E-22 155.2 11.8 169 236-416 27-203 (205)
134 2zej_A Dardarin, leucine-rich 99.7 1.6E-17 5.4E-22 150.0 12.8 166 237-419 2-180 (184)
135 2xtp_A GTPase IMAP family memb 99.7 1.1E-17 3.9E-22 159.7 12.1 179 235-419 20-210 (260)
136 2aka_B Dynamin-1; fusion prote 99.7 1.5E-17 5.2E-22 161.5 13.2 167 235-414 24-250 (299)
137 2wkq_A NPH1-1, RAS-related C3 99.7 8.3E-18 2.8E-22 165.2 10.8 170 236-417 154-330 (332)
138 1wb1_A Translation elongation 99.7 1.1E-16 3.8E-21 166.6 14.9 160 236-416 18-188 (482)
139 3t5d_A Septin-7; GTP-binding p 99.7 1E-16 3.5E-21 154.7 13.0 168 237-416 8-203 (274)
140 3dpu_A RAB family protein; roc 99.7 1.6E-16 5.3E-21 167.6 14.5 161 235-420 39-211 (535)
141 2f9l_A RAB11B, member RAS onco 99.7 3.7E-16 1.3E-20 142.8 15.0 162 237-418 5-169 (199)
142 3j2k_7 ERF3, eukaryotic polype 99.7 6.8E-16 2.3E-20 158.9 16.8 160 236-409 16-217 (439)
143 3izy_P Translation initiation 99.7 1.2E-17 4.1E-22 175.2 3.4 163 236-417 3-168 (537)
144 3sjy_A Translation initiation 99.7 7E-16 2.4E-20 157.1 15.2 165 235-418 6-193 (403)
145 3tr5_A RF-3, peptide chain rel 99.7 3.9E-16 1.3E-20 164.0 13.3 115 237-365 13-149 (528)
146 1jwy_B Dynamin A GTPase domain 99.6 5.9E-15 2E-19 144.5 20.0 180 226-418 13-263 (315)
147 1oix_A RAS-related protein RAB 99.6 2.7E-15 9.2E-20 136.4 15.6 159 237-415 29-190 (191)
148 2x2e_A Dynamin-1; nitration, h 99.6 3.4E-16 1.2E-20 156.6 9.6 168 235-413 29-254 (353)
149 4a9a_A Ribosome-interacting GT 99.6 2.2E-15 7.6E-20 151.4 15.2 121 237-363 72-195 (376)
150 1s0u_A EIF-2-gamma, translatio 99.6 5.4E-15 1.8E-19 150.7 17.8 160 236-417 7-198 (408)
151 3def_A T7I23.11 protein; chlor 99.6 2.4E-15 8.3E-20 144.1 14.2 129 235-366 34-167 (262)
152 1udx_A The GTP-binding protein 99.6 3.3E-15 1.1E-19 152.3 15.9 168 236-419 156-327 (416)
153 2elf_A Protein translation elo 99.6 2.6E-15 8.9E-20 151.2 14.8 148 239-417 23-180 (370)
154 1kk1_A EIF2gamma; initiation o 99.6 6E-15 2E-19 150.5 17.6 162 236-417 9-200 (410)
155 1zo1_I IF2, translation initia 99.6 4.2E-17 1.4E-21 169.7 1.3 160 235-413 2-163 (501)
156 1h65_A Chloroplast outer envel 99.6 1E-14 3.4E-19 140.3 17.8 128 236-366 38-170 (270)
157 3cb4_D GTP-binding protein LEP 99.6 5.1E-15 1.7E-19 157.4 16.9 160 237-418 4-183 (599)
158 3c5h_A Glucocorticoid receptor 99.6 4E-16 1.4E-20 149.0 7.4 171 235-416 17-254 (255)
159 2ywe_A GTP-binding protein LEP 99.6 2.5E-15 8.5E-20 159.6 13.8 160 237-418 6-185 (600)
160 1pui_A ENGB, probable GTP-bind 99.6 1.2E-14 4E-19 133.3 16.3 168 235-417 24-199 (210)
161 1wxq_A GTP-binding protein; st 99.6 1.2E-16 4.1E-21 162.3 2.7 87 239-329 2-114 (397)
162 3p26_A Elongation factor 1 alp 99.6 4.7E-15 1.6E-19 154.5 13.6 158 236-406 32-227 (483)
163 2c78_A Elongation factor TU-A; 99.6 4E-15 1.4E-19 151.5 12.6 165 236-417 10-212 (405)
164 3izq_1 HBS1P, elongation facto 99.6 3.5E-15 1.2E-19 159.4 12.5 161 235-408 165-363 (611)
165 1zun_B Sulfate adenylate trans 99.6 1.3E-14 4.6E-19 149.0 15.8 154 236-407 23-214 (434)
166 1g7s_A Translation initiation 99.6 6.9E-15 2.4E-19 156.4 13.0 168 236-417 4-218 (594)
167 1d2e_A Elongation factor TU (E 99.6 1.4E-14 4.6E-19 147.3 14.0 164 237-417 3-195 (397)
168 2j69_A Bacterial dynamin-like 99.6 2.4E-15 8.1E-20 163.1 8.5 174 236-419 68-327 (695)
169 1nrj_B SR-beta, signal recogni 99.6 9.7E-15 3.3E-19 134.8 11.3 152 235-403 10-170 (218)
170 3zvr_A Dynamin-1; hydrolase, D 99.6 2.6E-14 8.9E-19 154.7 15.0 167 235-413 49-274 (772)
171 3t34_A Dynamin-related protein 99.6 1.9E-14 6.5E-19 144.2 12.8 166 233-411 30-255 (360)
172 3r7w_B Gtpase2, GTP-binding pr 99.5 4.1E-14 1.4E-18 139.3 13.7 166 239-417 1-174 (331)
173 3mca_A HBS1, elongation factor 99.5 3.9E-15 1.3E-19 158.5 4.9 162 237-415 177-395 (592)
174 1jny_A EF-1-alpha, elongation 99.5 3.4E-14 1.2E-18 146.1 11.2 157 236-408 5-204 (435)
175 1f60_A Elongation factor EEF1A 99.5 1.4E-14 4.6E-19 150.0 7.6 155 237-407 7-202 (458)
176 2h5e_A Peptide chain release f 99.5 2.1E-13 7.1E-18 143.3 16.0 117 236-366 12-150 (529)
177 2qag_A Septin-2, protein NEDD5 99.5 5.7E-14 2E-18 140.9 11.1 169 236-417 36-233 (361)
178 2www_A Methylmalonic aciduria 99.5 8.8E-15 3E-19 146.2 4.7 155 235-417 72-279 (349)
179 3avx_A Elongation factor TS, e 99.5 1.4E-13 4.9E-18 153.3 14.2 164 236-416 295-485 (1289)
180 1r5b_A Eukaryotic peptide chai 99.5 3.2E-14 1.1E-18 147.5 8.3 161 236-408 42-243 (467)
181 3p32_A Probable GTPase RV1496/ 99.5 2.7E-14 9.4E-19 142.9 7.4 158 235-417 77-284 (355)
182 2xex_A Elongation factor G; GT 99.5 2.8E-13 9.6E-18 146.8 15.7 116 236-365 9-142 (693)
183 2ged_A SR-beta, signal recogni 99.5 8.3E-14 2.8E-18 125.8 9.2 118 235-366 46-172 (193)
184 1dar_A EF-G, elongation factor 99.5 4.1E-13 1.4E-17 145.5 15.5 116 236-365 11-144 (691)
185 1jal_A YCHF protein; nucleotid 99.5 5.1E-13 1.8E-17 133.5 14.5 90 237-328 2-108 (363)
186 3vqt_A RF-3, peptide chain rel 99.4 9.1E-13 3.1E-17 139.0 16.2 116 237-366 31-168 (548)
187 2rdo_7 EF-G, elongation factor 99.4 1.8E-12 6.2E-17 140.6 18.0 116 236-365 9-149 (704)
188 2dy1_A Elongation factor G; tr 99.4 1.5E-12 5E-17 140.6 16.6 114 236-363 8-139 (665)
189 2dby_A GTP-binding protein; GD 99.4 2.2E-12 7.6E-17 129.5 13.2 89 238-328 2-111 (368)
190 2p67_A LAO/AO transport system 99.4 2.5E-13 8.6E-18 135.2 6.3 157 235-416 54-260 (341)
191 2qnr_A Septin-2, protein NEDD5 99.4 1.7E-12 5.7E-17 127.0 10.9 170 235-417 16-214 (301)
192 2wsm_A Hydrogenase expression/ 99.3 2.2E-12 7.6E-17 119.2 6.9 156 236-419 29-216 (221)
193 2qpt_A EH domain-containing pr 99.3 7.4E-12 2.5E-16 132.2 11.4 126 236-366 64-234 (550)
194 2qag_C Septin-7; cell cycle, c 99.3 1.3E-11 4.4E-16 125.9 12.2 169 235-415 29-225 (418)
195 3j25_A Tetracycline resistance 99.3 3.3E-12 1.1E-16 137.2 8.2 168 238-419 3-241 (638)
196 1yrb_A ATP(GTP)binding protein 99.3 5.3E-12 1.8E-16 119.9 7.1 125 284-417 109-257 (262)
197 2qm8_A GTPase/ATPase; G protei 99.2 2.1E-11 7.2E-16 121.1 11.3 158 235-416 53-260 (337)
198 3h2y_A GTPase family protein; 99.2 4.1E-13 1.4E-17 135.0 -4.3 146 205-366 135-289 (368)
199 2hf9_A Probable hydrogenase ni 99.2 2.4E-11 8.3E-16 112.6 7.8 155 236-418 37-225 (226)
200 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.4E-10 4.8E-15 117.2 13.8 92 235-328 18-127 (392)
201 4fn5_A EF-G 1, elongation fact 99.2 4.1E-10 1.4E-14 122.4 18.1 115 237-365 13-152 (709)
202 3ec1_A YQEH GTPase; atnos1, at 99.2 5.4E-13 1.8E-17 134.2 -4.7 146 205-366 137-290 (369)
203 1n0u_A EF-2, elongation factor 99.2 2.5E-11 8.4E-16 134.2 7.9 115 236-364 18-164 (842)
204 2j37_W Signal recognition part 99.0 5.7E-10 2E-14 116.1 9.1 173 236-425 100-325 (504)
205 2ohf_A Protein OLA1, GTP-bindi 99.0 6.4E-10 2.2E-14 112.2 9.0 92 236-329 21-129 (396)
206 1puj_A YLQF, conserved hypothe 98.9 3.4E-09 1.2E-13 102.6 8.5 93 205-300 81-181 (282)
207 2qag_B Septin-6, protein NEDD5 98.8 1.4E-08 4.9E-13 103.3 12.5 125 236-366 39-192 (427)
208 1cip_A Protein (guanine nucleo 98.8 3.7E-09 1.3E-13 105.5 7.4 140 270-418 179-345 (353)
209 1u0l_A Probable GTPase ENGC; p 98.8 4E-09 1.4E-13 102.9 6.3 138 252-413 32-169 (301)
210 1zcb_A G alpha I/13; GTP-bindi 98.8 3E-09 1E-13 106.4 5.2 139 271-418 188-354 (362)
211 3dm5_A SRP54, signal recogniti 98.7 1.7E-07 5.8E-12 95.8 15.8 145 236-405 99-279 (443)
212 1f5n_A Interferon-induced guan 98.7 2.1E-08 7.1E-13 106.1 8.3 98 234-338 35-140 (592)
213 1tq4_A IIGP1, interferon-induc 98.7 2.2E-07 7.6E-12 94.3 14.9 173 236-421 68-257 (413)
214 1azs_C GS-alpha; complex (lyas 98.7 4.6E-08 1.6E-12 99.0 9.0 139 271-418 204-386 (402)
215 3sop_A Neuronal-specific septi 98.7 7.2E-08 2.5E-12 92.6 9.8 124 238-366 3-156 (270)
216 2xtz_A Guanine nucleotide-bind 98.6 3.6E-08 1.2E-12 98.3 5.7 126 283-417 182-345 (354)
217 2v3c_C SRP54, signal recogniti 98.6 1.8E-08 6.2E-13 103.1 3.2 158 237-417 99-311 (432)
218 3ohm_A Guanine nucleotide-bind 98.6 4.3E-08 1.5E-12 96.6 5.5 139 271-418 154-319 (327)
219 3cnl_A YLQF, putative uncharac 98.6 2.4E-08 8.1E-13 95.6 3.3 80 208-299 79-159 (262)
220 4fid_A G protein alpha subunit 98.4 1.7E-07 5.8E-12 92.8 5.9 138 271-417 148-328 (340)
221 2yhs_A FTSY, cell division pro 98.3 5.4E-06 1.9E-10 85.6 14.9 121 235-363 291-451 (503)
222 3kl4_A SRP54, signal recogniti 98.3 7E-07 2.4E-11 91.1 7.7 144 236-404 96-277 (433)
223 3e70_C DPA, signal recognition 98.3 7.1E-06 2.4E-10 80.8 13.8 148 235-407 127-310 (328)
224 2yv5_A YJEQ protein; hydrolase 98.3 2.1E-06 7.3E-11 83.5 9.4 85 317-412 80-164 (302)
225 3szr_A Interferon-induced GTP- 98.2 4.7E-06 1.6E-10 88.8 11.9 79 284-366 147-230 (608)
226 1puj_A YLQF, conserved hypothe 98.2 3.9E-06 1.3E-10 81.0 10.0 103 289-417 4-106 (282)
227 1j8m_F SRP54, signal recogniti 98.2 5.6E-06 1.9E-10 80.4 9.8 145 237-407 98-281 (297)
228 1vma_A Cell division protein F 98.2 3.4E-05 1.2E-09 75.2 15.3 23 236-258 103-125 (306)
229 3h2y_A GTPase family protein; 98.1 8.8E-06 3E-10 81.4 10.4 91 312-415 65-158 (368)
230 3ec1_A YQEH GTPase; atnos1, at 98.0 1.3E-05 4.3E-10 80.3 9.2 89 315-416 70-161 (369)
231 3l82_B F-box only protein 4; T 98.0 7.2E-06 2.5E-10 75.3 6.4 103 308-418 118-224 (227)
232 3b9q_A Chloroplast SRP recepto 98.0 0.00061 2.1E-08 66.1 20.2 121 236-363 99-259 (302)
233 1zu4_A FTSY; GTPase, signal re 97.9 0.00044 1.5E-08 67.7 18.0 23 236-258 104-126 (320)
234 2og2_A Putative signal recogni 97.9 0.00088 3E-08 66.6 20.3 122 236-364 156-317 (359)
235 2yv5_A YJEQ protein; hydrolase 97.9 4.4E-06 1.5E-10 81.3 2.6 77 205-296 144-228 (302)
236 1rj9_A FTSY, signal recognitio 97.8 5.9E-05 2E-09 73.4 9.9 122 236-364 101-261 (304)
237 2ffh_A Protein (FFH); SRP54, s 97.8 0.0011 3.9E-08 67.2 18.5 73 282-364 179-251 (425)
238 3cnl_A YLQF, putative uncharac 97.7 2.3E-05 7.9E-10 74.6 5.2 94 292-414 5-98 (262)
239 3q5d_A Atlastin-1; G protein, 97.7 7E-05 2.4E-09 76.6 8.8 64 235-298 65-154 (447)
240 3l2o_B F-box only protein 4; s 97.7 8.2E-05 2.8E-09 71.5 8.0 104 308-419 203-310 (312)
241 2xxa_A Signal recognition part 97.6 0.00034 1.2E-08 71.3 12.2 117 237-364 100-254 (433)
242 1t9h_A YLOQ, probable GTPase E 97.6 2.4E-06 8.1E-11 83.4 -4.2 78 205-297 152-237 (307)
243 1u0l_A Probable GTPase ENGC; p 97.6 2E-05 6.8E-10 76.5 2.4 80 204-297 147-234 (301)
244 2rcn_A Probable GTPase ENGC; Y 97.5 2E-05 6.9E-10 78.3 0.9 78 205-296 194-280 (358)
245 2px0_A Flagellar biosynthesis 97.3 0.00014 4.9E-09 70.4 4.7 24 235-258 103-126 (296)
246 1ls1_A Signal recognition part 97.2 0.0018 6.1E-08 62.5 11.0 23 236-258 97-119 (295)
247 1t9h_A YLOQ, probable GTPase E 97.0 0.00039 1.3E-08 67.7 4.4 84 317-410 87-170 (307)
248 2rcn_A Probable GTPase ENGC; Y 96.9 0.004 1.4E-07 61.8 10.1 83 317-411 131-213 (358)
249 3ney_A 55 kDa erythrocyte memb 96.5 0.00064 2.2E-08 61.8 1.4 57 236-294 18-76 (197)
250 4dzz_A Plasmid partitioning pr 96.1 0.012 4.3E-07 52.4 7.7 66 283-363 75-143 (206)
251 1kgd_A CASK, peripheral plasma 95.9 0.0042 1.4E-07 55.0 3.3 25 236-260 4-28 (180)
252 4ido_A Atlastin-1; GTPase, GTP 95.4 0.071 2.4E-06 54.3 10.6 88 236-325 66-179 (457)
253 3m6a_A ATP-dependent protease 95.1 0.025 8.4E-07 59.2 6.1 112 141-259 7-130 (543)
254 1ex7_A Guanylate kinase; subst 95.0 0.0065 2.2E-07 54.6 1.4 49 239-289 3-53 (186)
255 1lvg_A Guanylate kinase, GMP k 94.9 0.01 3.5E-07 53.4 2.3 24 236-259 3-26 (198)
256 3cwq_A Para family chromosome 94.7 0.095 3.2E-06 47.4 8.5 67 283-364 67-134 (209)
257 3tr0_A Guanylate kinase, GMP k 94.7 0.015 5.1E-07 51.9 3.0 25 236-260 6-30 (205)
258 1s96_A Guanylate kinase, GMP k 94.7 0.015 5E-07 53.5 3.0 26 235-260 14-39 (219)
259 1zp6_A Hypothetical protein AT 94.6 0.016 5.3E-07 51.2 2.8 25 236-260 8-32 (191)
260 3c8u_A Fructokinase; YP_612366 94.6 0.023 7.8E-07 51.3 4.0 26 235-260 20-45 (208)
261 1znw_A Guanylate kinase, GMP k 94.6 0.017 5.6E-07 52.2 2.9 25 236-260 19-43 (207)
262 3end_A Light-independent proto 94.5 0.078 2.7E-06 50.7 7.7 67 283-362 156-225 (307)
263 1ye8_A Protein THEP1, hypothet 94.3 0.018 6.1E-07 51.1 2.5 22 239-260 2-23 (178)
264 1z6g_A Guanylate kinase; struc 94.3 0.018 6.2E-07 52.6 2.5 26 235-260 21-46 (218)
265 3tif_A Uncharacterized ABC tra 94.3 0.025 8.5E-07 52.5 3.4 26 235-260 29-54 (235)
266 3a00_A Guanylate kinase, GMP k 94.0 0.021 7.2E-07 50.6 2.3 23 238-260 2-24 (186)
267 3tau_A Guanylate kinase, GMP k 94.0 0.027 9.3E-07 50.9 3.0 26 235-260 6-31 (208)
268 2pcj_A ABC transporter, lipopr 94.0 0.029 9.9E-07 51.6 3.2 26 235-260 28-53 (224)
269 2j41_A Guanylate kinase; GMP, 93.9 0.029 9.8E-07 50.0 3.0 25 236-260 5-29 (207)
270 2cbz_A Multidrug resistance-as 93.9 0.033 1.1E-06 51.8 3.4 26 235-260 29-54 (237)
271 1b0u_A Histidine permease; ABC 93.8 0.034 1.1E-06 52.5 3.5 26 235-260 30-55 (262)
272 1htw_A HI0065; nucleotide-bind 93.7 0.028 9.7E-07 48.9 2.4 26 235-260 31-56 (158)
273 4gp7_A Metallophosphoesterase; 93.6 0.028 9.5E-07 49.2 2.3 24 236-259 8-31 (171)
274 2olj_A Amino acid ABC transpor 93.6 0.039 1.3E-06 52.1 3.5 26 235-260 48-73 (263)
275 4eun_A Thermoresistant glucoki 93.6 0.034 1.2E-06 49.7 2.9 24 236-259 28-51 (200)
276 1g6h_A High-affinity branched- 93.5 0.038 1.3E-06 51.9 3.3 26 235-260 31-56 (257)
277 3gfo_A Cobalt import ATP-bindi 93.5 0.039 1.3E-06 52.5 3.3 26 235-260 32-57 (275)
278 1vpl_A ABC transporter, ATP-bi 93.5 0.042 1.4E-06 51.7 3.5 26 235-260 39-64 (256)
279 2pze_A Cystic fibrosis transme 93.5 0.041 1.4E-06 50.8 3.3 26 235-260 32-57 (229)
280 4g1u_C Hemin import ATP-bindin 93.5 0.041 1.4E-06 52.1 3.3 26 235-260 35-60 (266)
281 2ghi_A Transport protein; mult 93.5 0.042 1.4E-06 51.8 3.4 26 235-260 44-69 (260)
282 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.56 1.9E-05 43.0 11.2 24 236-259 38-61 (262)
283 1mv5_A LMRA, multidrug resista 93.5 0.037 1.3E-06 51.6 3.0 26 235-260 26-51 (243)
284 3asz_A Uridine kinase; cytidin 93.4 0.03 1E-06 50.3 2.3 24 236-259 5-28 (211)
285 1sgw_A Putative ABC transporte 93.4 0.038 1.3E-06 50.6 3.0 26 235-260 33-58 (214)
286 2ff7_A Alpha-hemolysin translo 93.4 0.041 1.4E-06 51.4 3.3 26 235-260 33-58 (247)
287 2zu0_C Probable ATP-dependent 93.4 0.044 1.5E-06 51.8 3.5 26 235-260 44-69 (267)
288 2ixe_A Antigen peptide transpo 93.4 0.044 1.5E-06 52.0 3.4 26 235-260 43-68 (271)
289 1ji0_A ABC transporter; ATP bi 93.3 0.044 1.5E-06 51.0 3.3 26 235-260 30-55 (240)
290 2qor_A Guanylate kinase; phosp 93.3 0.04 1.4E-06 49.4 2.9 25 236-260 11-35 (204)
291 2qi9_C Vitamin B12 import ATP- 93.3 0.046 1.6E-06 51.2 3.3 26 235-260 24-49 (249)
292 2yz2_A Putative ABC transporte 93.2 0.048 1.6E-06 51.6 3.4 26 235-260 31-56 (266)
293 3lnc_A Guanylate kinase, GMP k 93.2 0.038 1.3E-06 50.6 2.7 26 235-260 25-51 (231)
294 2v9p_A Replication protein E1; 93.2 0.039 1.3E-06 53.4 2.9 25 235-259 124-148 (305)
295 1kag_A SKI, shikimate kinase I 93.2 0.037 1.3E-06 47.9 2.4 24 237-260 4-27 (173)
296 2d2e_A SUFC protein; ABC-ATPas 93.2 0.047 1.6E-06 51.1 3.3 26 235-260 27-52 (250)
297 2ihy_A ABC transporter, ATP-bi 93.2 0.048 1.7E-06 52.0 3.3 26 235-260 45-70 (279)
298 3b85_A Phosphate starvation-in 93.0 0.045 1.5E-06 49.8 2.7 25 236-260 21-45 (208)
299 2nq2_C Hypothetical ABC transp 93.0 0.054 1.8E-06 50.8 3.3 26 235-260 29-54 (253)
300 1sxj_E Activator 1 40 kDa subu 92.8 0.39 1.3E-05 46.4 9.4 22 238-259 37-58 (354)
301 2onk_A Molybdate/tungstate ABC 92.8 0.059 2E-06 50.2 3.3 23 238-260 25-47 (240)
302 3n70_A Transport activator; si 92.8 0.63 2.2E-05 39.1 9.6 25 236-260 23-47 (145)
303 2bbw_A Adenylate kinase 4, AK4 92.8 0.061 2.1E-06 49.7 3.4 23 236-258 26-48 (246)
304 1knq_A Gluconate kinase; ALFA/ 92.8 0.046 1.6E-06 47.5 2.4 24 236-259 7-30 (175)
305 1fnn_A CDC6P, cell division co 92.7 0.24 8.1E-06 48.3 7.8 22 238-259 45-66 (389)
306 2i3b_A HCR-ntpase, human cance 92.7 0.048 1.6E-06 48.8 2.4 22 238-259 2-23 (189)
307 3ec2_A DNA replication protein 92.7 0.042 1.4E-06 48.1 2.0 25 236-260 37-61 (180)
308 2bbs_A Cystic fibrosis transme 92.6 0.063 2.2E-06 51.5 3.3 26 235-260 62-87 (290)
309 3vaa_A Shikimate kinase, SK; s 92.6 0.065 2.2E-06 47.8 3.2 24 236-259 24-47 (199)
310 2ehv_A Hypothetical protein PH 92.6 0.057 2E-06 49.4 2.9 24 235-258 28-51 (251)
311 2eyu_A Twitching motility prot 92.5 0.05 1.7E-06 51.3 2.4 25 235-259 23-47 (261)
312 3aez_A Pantothenate kinase; tr 92.5 0.052 1.8E-06 52.6 2.5 25 235-259 88-112 (312)
313 3uie_A Adenylyl-sulfate kinase 92.5 0.054 1.8E-06 48.4 2.4 25 236-260 24-48 (200)
314 3lw7_A Adenylate kinase relate 92.4 0.065 2.2E-06 45.8 2.9 20 238-257 2-21 (179)
315 3nh6_A ATP-binding cassette SU 92.4 0.047 1.6E-06 52.8 2.1 26 235-260 78-103 (306)
316 3zvl_A Bifunctional polynucleo 92.4 0.58 2E-05 46.9 10.3 24 236-259 257-280 (416)
317 3ljc_A ATP-dependent protease 92.2 0.077 2.6E-06 49.7 3.3 38 92-129 212-250 (252)
318 3kb2_A SPBC2 prophage-derived 92.2 0.071 2.4E-06 45.7 2.9 21 239-259 3-23 (173)
319 3tui_C Methionine import ATP-b 92.1 0.081 2.8E-06 52.5 3.5 26 235-260 52-77 (366)
320 2bdt_A BH3686; alpha-beta prot 92.1 0.071 2.4E-06 46.9 2.8 21 239-259 4-24 (189)
321 2x8a_A Nuclear valosin-contain 92.1 0.063 2.2E-06 50.9 2.6 21 240-260 47-67 (274)
322 2pjz_A Hypothetical protein ST 92.1 0.082 2.8E-06 49.9 3.3 24 237-260 30-53 (263)
323 4b4t_K 26S protease regulatory 92.0 0.83 2.9E-05 46.1 10.9 24 236-259 205-228 (428)
324 4a74_A DNA repair and recombin 92.0 0.052 1.8E-06 49.0 1.8 24 236-259 24-47 (231)
325 1y63_A LMAJ004144AAA protein; 92.0 0.089 3E-06 46.3 3.3 26 235-260 8-33 (184)
326 1qhx_A CPT, protein (chloramph 92.0 0.096 3.3E-06 45.4 3.4 23 237-259 3-25 (178)
327 2kjq_A DNAA-related protein; s 92.0 0.076 2.6E-06 45.5 2.7 25 236-260 35-59 (149)
328 2jeo_A Uridine-cytidine kinase 91.9 0.066 2.3E-06 49.6 2.4 25 235-259 23-47 (245)
329 1kht_A Adenylate kinase; phosp 91.9 0.086 2.9E-06 46.0 3.1 23 237-259 3-25 (192)
330 3fvq_A Fe(3+) IONS import ATP- 91.9 0.085 2.9E-06 52.2 3.3 26 235-260 28-53 (359)
331 1cke_A CK, MSSA, protein (cyti 91.9 0.074 2.5E-06 48.1 2.7 23 237-259 5-27 (227)
332 2npi_A Protein CLP1; CLP1-PCF1 91.8 0.069 2.4E-06 54.6 2.6 26 235-260 136-161 (460)
333 1ly1_A Polynucleotide kinase; 91.8 0.084 2.9E-06 45.6 2.8 21 239-259 4-24 (181)
334 4b4t_I 26S protease regulatory 91.7 1.3 4.5E-05 44.6 11.8 25 236-260 215-239 (437)
335 2yyz_A Sugar ABC transporter, 91.7 0.094 3.2E-06 51.9 3.4 26 235-260 27-52 (359)
336 2qt1_A Nicotinamide riboside k 91.7 0.085 2.9E-06 47.2 2.9 26 235-260 19-44 (207)
337 2it1_A 362AA long hypothetical 91.7 0.097 3.3E-06 51.8 3.5 26 235-260 27-52 (362)
338 4b4t_H 26S protease regulatory 91.7 1.2 4E-05 45.4 11.5 25 236-260 242-266 (467)
339 3h4m_A Proteasome-activating n 91.6 0.47 1.6E-05 44.3 8.1 25 236-260 50-74 (285)
340 3rlf_A Maltose/maltodextrin im 91.6 0.1 3.4E-06 52.1 3.5 26 235-260 27-52 (381)
341 2wwf_A Thymidilate kinase, put 91.6 0.12 3.9E-06 46.2 3.6 24 236-259 9-32 (212)
342 4b4t_L 26S protease subunit RP 91.5 1.7 5.7E-05 44.0 12.5 25 236-260 214-238 (437)
343 2rhm_A Putative kinase; P-loop 91.5 0.088 3E-06 46.2 2.7 23 237-259 5-27 (193)
344 4b4t_J 26S protease regulatory 91.4 1.5 5.3E-05 43.8 11.9 24 237-260 182-205 (405)
345 1rz3_A Hypothetical protein rb 91.4 0.15 5.1E-06 45.6 4.1 24 236-259 21-44 (201)
346 2if2_A Dephospho-COA kinase; a 91.4 0.086 3E-06 46.9 2.5 22 238-259 2-23 (204)
347 3cm0_A Adenylate kinase; ATP-b 91.4 0.079 2.7E-06 46.3 2.2 23 237-259 4-26 (186)
348 1z47_A CYSA, putative ABC-tran 91.4 0.1 3.5E-06 51.5 3.3 26 235-260 39-64 (355)
349 1v43_A Sugar-binding transport 91.4 0.11 3.7E-06 51.7 3.5 26 235-260 35-60 (372)
350 3t61_A Gluconokinase; PSI-biol 91.3 0.09 3.1E-06 46.8 2.6 23 237-259 18-40 (202)
351 4e22_A Cytidylate kinase; P-lo 91.3 0.11 3.8E-06 48.4 3.3 24 235-258 25-48 (252)
352 2c95_A Adenylate kinase 1; tra 91.3 0.11 3.9E-06 45.5 3.2 24 236-259 8-31 (196)
353 3trf_A Shikimate kinase, SK; a 91.3 0.11 3.8E-06 45.4 3.1 23 237-259 5-27 (185)
354 1jbk_A CLPB protein; beta barr 91.2 0.22 7.5E-06 42.8 4.9 24 236-259 42-65 (195)
355 1jjv_A Dephospho-COA kinase; P 91.1 0.11 3.7E-06 46.4 2.8 21 239-259 4-24 (206)
356 1np6_A Molybdopterin-guanine d 91.1 0.11 3.9E-06 45.7 2.9 24 237-260 6-29 (174)
357 1g29_1 MALK, maltose transport 91.0 0.12 4E-06 51.4 3.3 26 235-260 27-52 (372)
358 2v54_A DTMP kinase, thymidylat 91.0 0.14 4.6E-06 45.4 3.4 25 236-260 3-27 (204)
359 2plr_A DTMP kinase, probable t 91.0 0.11 3.9E-06 46.1 2.9 23 237-259 4-26 (213)
360 1xwi_A SKD1 protein; VPS4B, AA 90.9 1.1 3.9E-05 43.1 10.2 25 236-260 44-68 (322)
361 3iij_A Coilin-interacting nucl 90.9 0.12 4.3E-06 44.9 3.0 24 236-259 10-33 (180)
362 1sq5_A Pantothenate kinase; P- 90.8 0.098 3.4E-06 50.4 2.5 24 236-259 79-102 (308)
363 3d31_A Sulfate/molybdate ABC t 90.8 0.091 3.1E-06 51.8 2.2 26 235-260 24-49 (348)
364 3b9p_A CG5977-PA, isoform A; A 90.8 2.2 7.5E-05 39.9 12.0 25 236-260 53-77 (297)
365 1nks_A Adenylate kinase; therm 90.8 0.12 4E-06 45.2 2.7 21 239-259 3-23 (194)
366 3gd7_A Fusion complex of cysti 90.7 0.13 4.5E-06 51.4 3.3 26 235-260 45-70 (390)
367 1nn5_A Similar to deoxythymidy 90.6 0.15 5E-06 45.5 3.3 24 236-259 8-31 (215)
368 1tev_A UMP-CMP kinase; ploop, 90.6 0.12 4.1E-06 45.2 2.6 23 237-259 3-25 (196)
369 2jaq_A Deoxyguanosine kinase; 90.5 0.13 4.4E-06 45.4 2.8 21 239-259 2-22 (205)
370 1aky_A Adenylate kinase; ATP:A 90.5 0.15 5.1E-06 46.1 3.3 24 236-259 3-26 (220)
371 2gza_A Type IV secretion syste 90.5 0.12 4.1E-06 51.0 2.7 25 236-260 174-198 (361)
372 2yvu_A Probable adenylyl-sulfa 90.4 0.14 4.7E-06 45.0 2.8 25 235-259 11-35 (186)
373 2w0m_A SSO2452; RECA, SSPF, un 90.2 0.14 4.7E-06 46.0 2.8 24 236-259 22-45 (235)
374 3ozx_A RNAse L inhibitor; ATP 90.2 0.15 5E-06 53.3 3.3 31 229-260 18-48 (538)
375 2vli_A Antibiotic resistance p 90.2 0.14 4.6E-06 44.6 2.6 24 236-259 4-27 (183)
376 1oxx_K GLCV, glucose, ABC tran 90.2 0.086 3E-06 52.0 1.4 26 235-260 29-54 (353)
377 1zd8_A GTP:AMP phosphotransfer 90.2 0.15 5.2E-06 46.3 3.0 24 236-259 6-29 (227)
378 2vp4_A Deoxynucleoside kinase; 90.2 0.12 4.2E-06 47.2 2.4 26 235-260 18-43 (230)
379 2f1r_A Molybdopterin-guanine d 90.1 0.067 2.3E-06 47.1 0.5 23 238-260 3-25 (171)
380 1gvn_B Zeta; postsegregational 90.0 0.25 8.5E-06 47.1 4.5 24 236-259 32-55 (287)
381 2iyv_A Shikimate kinase, SK; t 90.0 0.14 4.9E-06 44.6 2.6 22 238-259 3-24 (184)
382 2cdn_A Adenylate kinase; phosp 89.9 0.19 6.4E-06 44.7 3.4 24 236-259 19-42 (201)
383 2pt7_A CAG-ALFA; ATPase, prote 89.9 0.14 4.7E-06 50.0 2.6 25 236-260 170-194 (330)
384 1cr0_A DNA primase/helicase; R 89.9 0.15 5.2E-06 48.3 2.9 25 235-259 33-57 (296)
385 3co5_A Putative two-component 89.8 1.9 6.3E-05 36.0 9.5 24 237-260 27-50 (143)
386 2bwj_A Adenylate kinase 5; pho 89.8 0.17 5.8E-06 44.5 3.0 23 237-259 12-34 (199)
387 2ewv_A Twitching motility prot 89.8 0.13 4.3E-06 51.1 2.3 24 236-259 135-158 (372)
388 3jvv_A Twitching mobility prot 89.8 0.13 4.5E-06 50.7 2.4 24 236-259 122-145 (356)
389 2cvh_A DNA repair and recombin 89.8 0.19 6.4E-06 44.9 3.3 25 235-259 18-42 (220)
390 1zak_A Adenylate kinase; ATP:A 89.8 0.16 5.6E-06 45.9 2.9 24 236-259 4-27 (222)
391 3tqc_A Pantothenate kinase; bi 89.7 0.14 4.9E-06 49.7 2.5 24 236-259 91-114 (321)
392 3fb4_A Adenylate kinase; psych 89.6 0.16 5.6E-06 45.5 2.8 21 239-259 2-22 (216)
393 2pez_A Bifunctional 3'-phospho 89.6 0.17 5.7E-06 44.1 2.8 24 236-259 4-27 (179)
394 1odf_A YGR205W, hypothetical 3 89.6 0.15 5.1E-06 48.8 2.5 25 235-259 29-53 (290)
395 1lw7_A Transcriptional regulat 89.5 0.11 3.8E-06 51.2 1.6 24 237-260 170-193 (365)
396 1via_A Shikimate kinase; struc 89.4 0.17 5.7E-06 43.9 2.6 21 239-259 6-26 (175)
397 3dl0_A Adenylate kinase; phosp 89.4 0.17 6E-06 45.4 2.8 21 239-259 2-22 (216)
398 1yqt_A RNAse L inhibitor; ATP- 89.3 0.2 6.7E-06 52.3 3.4 26 235-260 45-70 (538)
399 1ixz_A ATP-dependent metallopr 89.3 0.15 5.1E-06 47.1 2.2 21 240-260 52-72 (254)
400 3a4m_A L-seryl-tRNA(SEC) kinas 89.2 0.18 6E-06 47.2 2.8 23 237-259 4-26 (260)
401 1ukz_A Uridylate kinase; trans 89.2 0.22 7.4E-06 44.2 3.2 23 237-259 15-37 (203)
402 2yl4_A ATP-binding cassette SU 89.2 0.2 6.7E-06 52.9 3.4 26 235-260 368-393 (595)
403 2p5t_B PEZT; postsegregational 89.2 0.24 8.1E-06 46.1 3.6 24 236-259 31-54 (253)
404 3b60_A Lipid A export ATP-bind 89.2 0.2 6.8E-06 52.7 3.4 26 235-260 367-392 (582)
405 1uf9_A TT1252 protein; P-loop, 89.1 0.19 6.6E-06 44.3 2.8 25 236-260 7-31 (203)
406 3u61_B DNA polymerase accessor 89.1 2.6 8.9E-05 40.0 11.1 97 239-364 50-150 (324)
407 2p65_A Hypothetical protein PF 89.0 0.31 1.1E-05 41.8 4.0 24 236-259 42-65 (187)
408 3qf4_B Uncharacterized ABC tra 88.9 0.22 7.5E-06 52.6 3.5 26 235-260 379-404 (598)
409 1xjc_A MOBB protein homolog; s 88.8 0.24 8.2E-06 43.5 3.1 23 237-259 4-26 (169)
410 3b5x_A Lipid A export ATP-bind 88.8 0.21 7.3E-06 52.4 3.3 26 235-260 367-392 (582)
411 3nwj_A ATSK2; P loop, shikimat 88.8 0.18 6.2E-06 47.2 2.4 23 237-259 48-70 (250)
412 3kta_A Chromosome segregation 88.7 0.23 7.7E-06 43.2 2.9 22 237-258 26-47 (182)
413 1e6c_A Shikimate kinase; phosp 88.6 0.22 7.6E-06 42.7 2.8 22 238-259 3-24 (173)
414 3be4_A Adenylate kinase; malar 88.6 0.21 7.1E-06 45.2 2.6 24 236-259 4-27 (217)
415 1n0w_A DNA repair protein RAD5 88.6 0.22 7.4E-06 45.3 2.8 25 235-259 22-46 (243)
416 3tlx_A Adenylate kinase 2; str 88.5 0.22 7.5E-06 46.0 2.8 24 236-259 28-51 (243)
417 3bos_A Putative DNA replicatio 88.5 0.26 8.8E-06 44.4 3.3 24 236-259 51-74 (242)
418 2obl_A ESCN; ATPase, hydrolase 88.5 0.21 7.1E-06 49.1 2.8 26 235-260 69-94 (347)
419 3j16_B RLI1P; ribosome recycli 88.4 0.24 8.3E-06 52.4 3.4 26 235-260 101-126 (608)
420 3umf_A Adenylate kinase; rossm 88.4 0.23 7.9E-06 45.4 2.9 23 237-259 29-51 (217)
421 1qf9_A UMP/CMP kinase, protein 88.4 0.21 7E-06 43.5 2.5 22 238-259 7-28 (194)
422 2pt5_A Shikimate kinase, SK; a 88.4 0.24 8.1E-06 42.4 2.8 21 239-259 2-22 (168)
423 4a82_A Cystic fibrosis transme 88.3 0.2 6.8E-06 52.7 2.6 26 235-260 365-390 (578)
424 3vfd_A Spastin; ATPase, microt 88.2 2.1 7.2E-05 42.1 10.0 25 236-260 147-171 (389)
425 2oap_1 GSPE-2, type II secreti 88.2 0.22 7.4E-06 51.6 2.8 25 236-260 259-283 (511)
426 2pbr_A DTMP kinase, thymidylat 88.2 0.24 8.1E-06 43.2 2.7 21 239-259 2-22 (195)
427 1in4_A RUVB, holliday junction 88.2 0.21 7.1E-06 48.5 2.5 23 238-260 52-74 (334)
428 1m7g_A Adenylylsulfate kinase; 88.1 0.24 8.2E-06 44.5 2.7 24 236-259 24-47 (211)
429 1p9r_A General secretion pathw 88.0 0.2 6.8E-06 50.6 2.3 24 236-259 166-189 (418)
430 1svm_A Large T antigen; AAA+ f 87.9 0.25 8.5E-06 49.1 3.0 25 235-259 167-191 (377)
431 1e4v_A Adenylate kinase; trans 87.9 0.24 8.3E-06 44.5 2.7 21 239-259 2-22 (214)
432 3syl_A Protein CBBX; photosynt 87.9 0.53 1.8E-05 44.5 5.2 24 236-259 66-89 (309)
433 3bk7_A ABC transporter ATP-bin 87.8 0.28 9.6E-06 51.9 3.4 26 235-260 115-140 (607)
434 1ak2_A Adenylate kinase isoenz 87.8 0.32 1.1E-05 44.4 3.4 24 236-259 15-38 (233)
435 1iy2_A ATP-dependent metallopr 87.7 0.22 7.4E-06 46.9 2.2 21 240-260 76-96 (278)
436 2z0h_A DTMP kinase, thymidylat 87.7 0.25 8.5E-06 43.3 2.5 21 239-259 2-22 (197)
437 3qf4_A ABC transporter, ATP-bi 87.6 0.25 8.5E-06 52.0 2.9 26 235-260 367-392 (587)
438 2ze6_A Isopentenyl transferase 87.4 0.28 9.5E-06 45.7 2.8 21 239-259 3-23 (253)
439 1vht_A Dephospho-COA kinase; s 87.3 0.28 9.7E-06 44.1 2.7 23 237-259 4-26 (218)
440 4b4t_M 26S protease regulatory 87.3 0.82 2.8E-05 46.2 6.4 25 236-260 214-238 (434)
441 3sr0_A Adenylate kinase; phosp 87.3 0.29 1E-05 44.3 2.8 21 239-259 2-22 (206)
442 1tue_A Replication protein E1; 87.2 0.46 1.6E-05 43.2 4.0 23 237-259 58-80 (212)
443 1zuh_A Shikimate kinase; alpha 87.2 0.31 1.1E-05 41.8 2.8 23 237-259 7-29 (168)
444 1nij_A Hypothetical protein YJ 87.1 0.21 7E-06 48.3 1.8 24 237-260 4-27 (318)
445 1lv7_A FTSH; alpha/beta domain 87.1 0.32 1.1E-05 44.9 3.0 22 238-259 46-67 (257)
446 3ozx_A RNAse L inhibitor; ATP 87.0 0.33 1.1E-05 50.6 3.3 26 235-260 292-317 (538)
447 1q3t_A Cytidylate kinase; nucl 86.9 0.38 1.3E-05 44.0 3.4 25 235-259 14-38 (236)
448 1gtv_A TMK, thymidylate kinase 86.9 0.15 5E-06 45.6 0.5 21 239-259 2-22 (214)
449 2f6r_A COA synthase, bifunctio 86.9 0.36 1.2E-05 45.7 3.3 23 236-258 74-96 (281)
450 2xb4_A Adenylate kinase; ATP-b 86.8 0.32 1.1E-05 44.2 2.8 21 239-259 2-22 (223)
451 2w58_A DNAI, primosome compone 86.7 0.36 1.2E-05 42.6 3.1 22 238-259 55-76 (202)
452 2dpy_A FLII, flagellum-specifi 86.7 0.3 1E-05 49.5 2.8 26 235-260 155-180 (438)
453 1yqt_A RNAse L inhibitor; ATP- 86.6 0.35 1.2E-05 50.4 3.3 26 235-260 310-335 (538)
454 1nlf_A Regulatory protein REPA 86.5 0.31 1.1E-05 45.8 2.7 25 235-259 28-52 (279)
455 4eaq_A DTMP kinase, thymidylat 86.3 0.36 1.2E-05 44.3 2.9 24 236-259 25-48 (229)
456 3bk7_A ABC transporter ATP-bin 86.0 0.39 1.3E-05 50.8 3.3 26 235-260 380-405 (607)
457 3bfv_A CAPA1, CAPB2, membrane 86.0 1.8 6.1E-05 40.6 7.6 65 284-363 192-257 (271)
458 4f4c_A Multidrug resistance pr 85.9 0.36 1.2E-05 55.7 3.2 25 235-259 1103-1127(1321)
459 3d8b_A Fidgetin-like protein 1 85.9 1.6 5.5E-05 42.6 7.5 25 236-260 116-140 (357)
460 3r20_A Cytidylate kinase; stru 85.8 0.43 1.5E-05 44.1 3.1 23 237-259 9-31 (233)
461 1f2t_A RAD50 ABC-ATPase; DNA d 85.7 0.39 1.3E-05 40.9 2.5 23 236-258 22-44 (149)
462 2chg_A Replication factor C sm 85.6 0.42 1.4E-05 42.0 2.9 21 239-259 40-60 (226)
463 2dr3_A UPF0273 protein PH0284; 85.4 0.41 1.4E-05 43.4 2.8 23 236-258 22-44 (247)
464 1uj2_A Uridine-cytidine kinase 85.4 0.4 1.4E-05 44.4 2.7 23 237-259 22-44 (252)
465 3t15_A Ribulose bisphosphate c 85.4 0.46 1.6E-05 45.2 3.2 22 238-259 37-58 (293)
466 3euj_A Chromosome partition pr 85.4 0.35 1.2E-05 49.7 2.5 22 238-259 30-51 (483)
467 3cf0_A Transitional endoplasmi 85.2 0.48 1.6E-05 45.1 3.3 25 236-260 48-72 (301)
468 1njg_A DNA polymerase III subu 84.8 0.49 1.7E-05 42.0 3.0 22 238-259 46-67 (250)
469 3j16_B RLI1P; ribosome recycli 84.7 0.51 1.8E-05 49.9 3.5 24 238-261 379-402 (608)
470 3ake_A Cytidylate kinase; CMP 84.4 0.54 1.8E-05 41.5 3.0 21 239-259 4-24 (208)
471 3hws_A ATP-dependent CLP prote 84.3 1.3 4.3E-05 43.3 5.9 24 236-259 50-73 (363)
472 2grj_A Dephospho-COA kinase; T 84.1 0.52 1.8E-05 42.1 2.8 24 236-259 11-34 (192)
473 1ltq_A Polynucleotide kinase; 84.0 0.51 1.7E-05 44.6 2.8 21 239-259 4-24 (301)
474 2qby_A CDC6 homolog 1, cell di 83.9 0.53 1.8E-05 45.5 3.0 24 236-259 44-67 (386)
475 3k9g_A PF-32 protein; ssgcid, 83.8 3.5 0.00012 37.9 8.5 65 283-361 144-208 (267)
476 3qf7_A RAD50; ABC-ATPase, ATPa 83.8 0.46 1.6E-05 46.9 2.4 23 236-258 22-44 (365)
477 1a7j_A Phosphoribulokinase; tr 83.3 0.54 1.8E-05 44.8 2.7 24 236-259 4-27 (290)
478 3thx_A DNA mismatch repair pro 83.3 2.7 9.3E-05 46.6 8.6 22 236-257 661-682 (934)
479 1ofh_A ATP-dependent HSL prote 83.3 0.62 2.1E-05 43.8 3.1 23 237-259 50-72 (310)
480 3ug7_A Arsenical pump-driving 83.2 10 0.00034 36.8 11.9 92 318-416 238-334 (349)
481 1l8q_A Chromosomal replication 83.2 0.53 1.8E-05 45.1 2.6 23 237-259 37-59 (324)
482 2zan_A Vacuolar protein sortin 83.0 1.4 4.9E-05 44.4 5.8 25 236-260 166-190 (444)
483 2iw3_A Elongation factor 3A; a 82.7 0.63 2.2E-05 51.8 3.2 27 235-261 459-485 (986)
484 2qmh_A HPR kinase/phosphorylas 82.6 0.71 2.4E-05 41.8 3.0 26 235-260 32-57 (205)
485 2ph1_A Nucleotide-binding prot 82.6 4.5 0.00015 37.2 8.8 66 283-362 128-194 (262)
486 3pxg_A Negative regulator of g 82.4 1.1 3.8E-05 45.6 4.7 24 236-259 200-223 (468)
487 1pzn_A RAD51, DNA repair and r 82.1 0.53 1.8E-05 46.1 2.1 26 235-260 129-154 (349)
488 4f4c_A Multidrug resistance pr 82.0 0.68 2.3E-05 53.5 3.3 26 235-260 442-467 (1321)
489 2iw3_A Elongation factor 3A; a 82.0 0.46 1.6E-05 52.9 1.8 26 235-260 697-722 (986)
490 3g5u_A MCG1178, multidrug resi 81.6 0.71 2.4E-05 53.2 3.3 26 235-260 414-439 (1284)
491 2v1u_A Cell division control p 81.6 0.7 2.4E-05 44.7 2.8 24 236-259 43-66 (387)
492 1u0j_A DNA replication protein 81.5 2.5 8.7E-05 39.7 6.5 23 237-259 104-126 (267)
493 3a8t_A Adenylate isopentenyltr 81.4 0.8 2.7E-05 44.7 3.1 24 237-260 40-63 (339)
494 3eie_A Vacuolar protein sortin 81.3 0.86 2.9E-05 43.7 3.3 24 236-259 50-73 (322)
495 1d2n_A N-ethylmaleimide-sensit 81.3 0.64 2.2E-05 43.3 2.3 25 236-260 63-87 (272)
496 4fcw_A Chaperone protein CLPB; 81.2 0.89 3E-05 42.9 3.3 22 238-259 48-69 (311)
497 1p5z_B DCK, deoxycytidine kina 81.1 0.59 2E-05 43.4 2.0 25 236-260 23-47 (263)
498 3qks_A DNA double-strand break 81.0 0.74 2.5E-05 41.2 2.5 23 236-258 22-44 (203)
499 1tf7_A KAIC; homohexamer, hexa 81.0 0.69 2.4E-05 47.8 2.7 22 236-257 38-59 (525)
500 3hu3_A Transitional endoplasmi 81.0 3.2 0.00011 42.5 7.7 24 236-259 237-260 (489)
No 1
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-42 Score=347.93 Aligned_cols=337 Identities=26% Similarity=0.454 Sum_probs=276.7
Q ss_pred cccccCCCCCChHHHHHHHHHhhhhhhcccccchhH-HHHHHHHHHHHHHHHHHhchhHHHhhhcCCCcccchHHHHHhh
Q 037423 74 GAFQKLPMVMPSVDILSSALKKAKRVSATKGISNIA-KRERNKAAKQLDALMKELAVPLRDYVANFPNRKCLHPYERSLT 152 (435)
Q Consensus 74 ~~f~~~~~v~~~~e~~~~~~~r~~~~~~~~~~~~~~-~~~r~~~~~~l~~~~~~L~~~L~~~l~~fp~~~~L~~f~~~l~ 152 (435)
++|++||+||||+||||++|+||+|++|++++++.. .|+|.+|+++|+..++.+++.|.+++..||..+++|||++++.
T Consensus 3 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~ 82 (357)
T 2e87_A 3 NPFERMPTVLTADELIDKAFRRAEKAASSFKPRGNKVKKARLREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELV 82 (357)
T ss_dssp CTTTTCCCCCCHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHHHHHHhhccCCCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHH
Confidence 699999999999999999999999999999887775 4888999999999999999999999999999999999999999
Q ss_pred hhcCCCCcHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHhccchhHHHHhhcCCChhHHHHHHHHhccCCc
Q 037423 153 ELTLGDGNYEKVLKNVDALRKKVVSAGKEHASLCAKSLSKREAEERLSEGLQRLEEVFNREGKAVDDLLNIAKTLRAMPV 232 (435)
Q Consensus 153 e~~~~~~~y~~~L~~l~~~~~~i~~i~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~~l~~lp~ 232 (435)
+..++.+.+..+|..++.....+..+..+|............+......+.+++..+.......+..+...+..++.++.
T Consensus 83 ~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~ 162 (357)
T 2e87_A 83 DVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPV 162 (357)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999888888777777766544334444455555556667766665555556667777778888887
Q ss_pred cCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 233 VDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 233 ~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.+...++++++|++|+|||||+|++++..+.+++++++|.+.....+..++..+.+|||||+.+......+.++......
T Consensus 163 ~~~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 163 VDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp CCSSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 76778899999999999999999999988878889999999988888888889999999999876655556666666666
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
+.+.+|++++|+|++..++++.+++..|+..+...+.+.|+++|+||+|+..... . .....+......+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~-------~----~~~~~~~~~~~~~ 311 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN-------I----KRLEKFVKEKGLN 311 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH-------H----HHHHHHHHHTTCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH-------H----HHHHHHHHhcCCC
Confidence 6667899999999997777788888889998888655799999999999975421 1 1122222233468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
++++||++|+|+++++++|.+.+.....+
T Consensus 312 ~~~iSA~~g~gi~~l~~~i~~~l~~~~~~ 340 (357)
T 2e87_A 312 PIKISALKGTGIDLVKEEIIKTLRPLAEK 340 (357)
T ss_dssp CEECBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988665443
No 2
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=9.3e-24 Score=198.03 Aligned_cols=188 Identities=30% Similarity=0.489 Sum_probs=133.9
Q ss_pred HHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhH
Q 037423 225 KTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNN 304 (435)
Q Consensus 225 ~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ 304 (435)
..+..+|.++...++|+++|.+|+|||||+|++++..+.+.+++++|.+.....+..++..+.+|||||+.+.....+..
T Consensus 17 ~~~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 96 (228)
T 2qu8_A 17 LYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNT 96 (228)
T ss_dssp -----CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCH
T ss_pred heeccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhh
Confidence 35667888888889999999999999999999999888778888999999888888888899999999997655444444
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh
Q 037423 305 LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS 384 (435)
Q Consensus 305 ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 384 (435)
++......+...+|++++|+|+++...+.......|+..+.....+.|+++|+||+|+........ + .......
T Consensus 97 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~---~---~~~~~~~ 170 (228)
T 2qu8_A 97 IEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSI---D---NKLLIKQ 170 (228)
T ss_dssp HHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCH---H---HHHHHHH
T ss_pred HHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHH---H---HHHHHHH
Confidence 444444445556689999999997655554444557777777555799999999999986543211 1 1112233
Q ss_pred hhhcCC--CcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 385 YRKMGP--DGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 385 ~~~~~~--~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+....+ .+++++||++|.||++++++|.+.+...
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 171 ILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp HHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 333333 5799999999999999999999988654
No 3
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=3.8e-23 Score=212.97 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=150.1
Q ss_pred HHHhccchhHHHHhhcCCChhHHHHHH-HHhccCCc--cCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeee
Q 037423 198 RLSEGLQRLEEVFNREGKAVDDLLNIA-KTLRAMPV--VDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRG 273 (435)
Q Consensus 198 ~~~~~~~~~~~v~~~~~~~l~~L~~~~-~~l~~lp~--~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~ 273 (435)
++..+++.+..+|+.+|.++.+|.+.. ..+...+. .+....+|+++|++|||||||+|++++... .++++++||++
T Consensus 133 ~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d 212 (436)
T 2hjg_A 133 FYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRD 212 (436)
T ss_dssp SGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC--------
T ss_pred HHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceee
Confidence 444566677789999999999998853 33322211 123457999999999999999999998765 58889999999
Q ss_pred eeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH----HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC
Q 037423 274 ILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL----TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS 349 (435)
Q Consensus 274 ~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~----~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~ 349 (435)
.....+.+++..+.+|||||+.+..... +.+|.+ +..++.. +|++++|+|++ .+.+.++.. |+..+.+.
T Consensus 213 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~-~~~e~~~~~~~~~~~~~-ad~~llv~D~~--~~~s~~~~~-~~~~~~~~-- 285 (436)
T 2hjg_A 213 AVDTSFTYNQQEFVIVDTAGMRKKGKVY-ETTEKYSVLRALKAIDR-SEVVAVVLDGE--EGIIEQDKR-IAGYAHEA-- 285 (436)
T ss_dssp -CCEEEEETTEEEEETTHHHHTCBTTBC-CCCSHHHHHHHHHHHHH-CSEEEEEEETT--TCCCHHHHH-HHHHHHHT--
T ss_pred eeEEEEEECCeEEEEEECCCcCcCcccc-chHHHHHHHHHHHHHHh-CCEEEEEEcCC--cCCcHHHHH-HHHHHHHc--
Confidence 9988999999999999999997654311 111222 2234445 48999999998 567888875 77777764
Q ss_pred CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcccccccCCC
Q 037423 350 DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSRS 426 (435)
Q Consensus 350 ~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~ 426 (435)
++|+++|+||+|+.+..... .++.... ....+......+++++||++|.|++++++.+.+.+..+..+++|+.
T Consensus 286 ~~~iiiv~NK~Dl~~~~~~~--~~~~~~~--~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~~~~t~~ 358 (436)
T 2hjg_A 286 GKAVVIVVNKWDAVDKDEST--MKEFEEN--IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNV 358 (436)
T ss_dssp TCEEEEEEECGGGSCCCTTH--HHHHHHH--HHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcEEEEEECccCCCcchHH--HHHHHHH--HHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhcCCCHHH
Confidence 79999999999998654211 0111111 1112233345689999999999999999999999998887777643
No 4
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=5.7e-23 Score=212.81 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=151.1
Q ss_pred HHHHHhccchhHHHHhhcCCChhHHHHHHH-HhccCC--ccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCcee
Q 037423 196 EERLSEGLQRLEEVFNREGKAVDDLLNIAK-TLRAMP--VVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTT 271 (435)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~l~~L~~~~~-~l~~lp--~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT 271 (435)
.+++..+++....+++.++.++.+|.+... .+.... .......+++++|.+|+|||||+|++++.. ..++++++||
T Consensus 151 ~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt 230 (456)
T 4dcu_A 151 YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 230 (456)
T ss_dssp CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-----
T ss_pred HHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE
Confidence 344555666777889999999999987542 222111 112456789999999999999999999765 5788999999
Q ss_pred eeeeEEEEEeCCceEEEEeCCCCCCCCchh--hhHHHHH-HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Q 037423 272 RGILMGHINLGYQNFQITDTPGLLQRRDED--RNNLEKL-TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF 348 (435)
Q Consensus 272 ~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~ie~~-~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~ 348 (435)
.+.....+.+++..+++|||||+.+..... .+..... +..++.. +|++++|+|++ .+.+.++.. |...+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~-ad~~llviD~~--~~~~~~~~~-~~~~~~~~- 305 (456)
T 4dcu_A 231 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR-SEVVAVVLDGE--EGIIEQDKR-IAGYAHEA- 305 (456)
T ss_dssp -CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH-CSEEEEEEETT--TCCCHHHHH-HHHHHHHT-
T ss_pred EEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhh-CCEEEEEEeCC--CCcCHHHHH-HHHHHHHc-
Confidence 999888899999999999999987643211 1111111 2223444 48999999998 567777765 67777664
Q ss_pred CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh-hhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcccccccCC
Q 037423 349 SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS-YRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSR 425 (435)
Q Consensus 349 ~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~ 425 (435)
++|+|+|+||+|+.+..... .++.. ..+.. +......+++++||++|.||+++++.+.+.+..+..+++++
T Consensus 306 -~~~~ilv~NK~Dl~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~ 377 (456)
T 4dcu_A 306 -GKAVVIVVNKWDAVDKDEST--MKEFE---ENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTN 377 (456)
T ss_dssp -TCEEEEEEECGGGSCCCSSH--HHHHH---HHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCCCCHH
T ss_pred -CCCEEEEEEChhcCCCchHH--HHHHH---HHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcccCCHH
Confidence 79999999999998654221 11111 11111 11223468999999999999999999999998888887765
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=1.6e-21 Score=191.96 Aligned_cols=179 Identities=22% Similarity=0.244 Sum_probs=132.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeC-CceEEEEeCCCCCCCC--chhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLG-YQNFQITDTPGLLQRR--DEDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~-~~~~~liDTpG~~~~~--~~~~~~ie~~~~ 310 (435)
++...|+++|.+|+|||||+|+|++.++ .+++.++||++...+....+ +..+.+|||||+.+.. ......+...+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 3456899999999999999999998876 57889999999998888888 8999999999998754 222233334445
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.++... |++++|+|++ .+.+..+...|+..+... +.|+++|+||+|+...... .......+..... ..
T Consensus 88 ~~l~~a-D~il~VvD~~--~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~------~~~~~~~l~~~~~-~~ 155 (308)
T 3iev_A 88 QSLEEA-DVILFMIDAT--EGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKN------VLPLIDEIHKKHP-EL 155 (308)
T ss_dssp HHHHHC-SEEEEEEETT--TBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGG------GHHHHHHHHHHCT-TC
T ss_pred HHhhcC-CEEEEEEeCC--CCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHH------HHHHHHHHHHhcc-CC
Confidence 555554 9999999998 557777777567777764 7899999999999732211 1111111211110 22
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcccccccCC
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSR 425 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~ 425 (435)
.+++++||++|.|++++++.+.+.+.......+..
T Consensus 156 ~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~ 190 (308)
T 3iev_A 156 TEIVPISALKGANLDELVKTILKYLPEGEPLFPED 190 (308)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence 57999999999999999999999997765544443
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=5.9e-22 Score=204.20 Aligned_cols=221 Identities=19% Similarity=0.203 Sum_probs=146.2
Q ss_pred HHHHHhccchhHHHHhhcCCChhHHHHHH-HHhccCC-c--c---CCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccC
Q 037423 196 EERLSEGLQRLEEVFNREGKAVDDLLNIA-KTLRAMP-V--V---DLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNY 267 (435)
Q Consensus 196 ~~~~~~~~~~~~~v~~~~~~~l~~L~~~~-~~l~~lp-~--~---~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~ 267 (435)
.+++..+++.+..+|+.+|.++.+|.+.. ..+.... . . .....+++++|++|||||||+|++++... .++++
T Consensus 132 ~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~ 211 (439)
T 1mky_A 132 PELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPI 211 (439)
T ss_dssp HHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCC
T ss_pred HHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCC
Confidence 44555566667789999999999988743 3332211 1 0 12456999999999999999999998764 68999
Q ss_pred CceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHH----HHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHH
Q 037423 268 PFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEK----LTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKE 343 (435)
Q Consensus 268 ~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~----~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~ 343 (435)
++||++...+.+.+++..+.+|||||+........+.++. ....++.. ++++++|+|++ .+.+.++.. +...
T Consensus 212 ~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~-ad~vllv~d~~--~~~~~~~~~-i~~~ 287 (439)
T 1mky_A 212 PGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK-ADVVVIVLDAT--QGITRQDQR-MAGL 287 (439)
T ss_dssp C------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHH-CSEEEEEEETT--TCCCHHHHH-HHHH
T ss_pred CCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhh-CCEEEEEEeCC--CCCCHHHHH-HHHH
Confidence 9999999999999999999999999985432211011111 12233444 48899999998 456676653 5555
Q ss_pred HHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 344 IKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 344 l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
+... ++|+++|+||+|+.+..... ..+.... ....+......+++++||++|.|++++++.+.+.+..+..+++
T Consensus 288 l~~~--~~~~ilv~NK~Dl~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~i~ 361 (439)
T 1mky_A 288 MERR--GRASVVVFNKWDLVVHREKR--YDEFTKL--FREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVP 361 (439)
T ss_dssp HHHT--TCEEEEEEECGGGSTTGGGC--HHHHHHH--HHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHc--CCCEEEEEECccCCCchhhH--HHHHHHH--HHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhcccCC
Confidence 5553 79999999999997643110 1111111 1122333345689999999999999999999999999888887
Q ss_pred CCC
Q 037423 424 SRS 426 (435)
Q Consensus 424 t~~ 426 (435)
|+.
T Consensus 362 t~~ 364 (439)
T 1mky_A 362 SSA 364 (439)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 7
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.86 E-value=2.2e-21 Score=173.99 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=116.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
++.+|+++|++|+|||||+|++++... .+++++++|.+.....+.+++..+.+|||||+.+................+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 467899999999999999999998764 5678899999988888888888899999999976432211100011222343
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|++... +.++. .|+..+.... .+.|+++|+||+|+...... +......++
T Consensus 83 ~-ad~~i~v~D~~~~~--s~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----------------~~~~~~~~~ 142 (172)
T 2gj8_A 83 Q-ADRVLFMVDGTTTD--AVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLG----------------MSEVNGHAL 142 (172)
T ss_dssp T-CSEEEEEEETTTCC--CCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCE----------------EEEETTEEE
T ss_pred h-CCEEEEEEECCCCC--CHHHH-HHHHHHHHhcccCCCEEEEEECccCCcchhh----------------hhhccCCce
Confidence 4 58999999998543 33333 4666666543 36899999999998643210 111123579
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.|+++++++|.+.+..
T Consensus 143 ~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 143 IRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EECCTTTCTTHHHHHHHHHHHC--
T ss_pred EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999987643
No 8
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=5.7e-21 Score=169.75 Aligned_cols=161 Identities=19% Similarity=0.274 Sum_probs=112.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-c
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-H 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~ 315 (435)
..+++++|++|+|||||++++++..+.++.+|++|.+.....+.+++..+.+|||||+....... ..+.....++. .
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS--HHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc--hhHHHHHHHHhcC
Confidence 35799999999999999999998877777888888888888888888899999999987643221 11223333333 2
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.++++++|+|++. .+....|+..+.+. +.|+++|+||+|+........ + ... +....+.++++
T Consensus 81 ~~~~~i~v~D~~~-----~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~---~----~~~---~~~~~~~~~~~ 143 (165)
T 2wji_A 81 KPDLVVNIVDATA-----LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI---D----VDK---LEKILGVKVVP 143 (165)
T ss_dssp CCSEEEEEEETTC-----HHHHHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCC---C----HHH---HHHHHTSCEEE
T ss_pred CCCEEEEEecCCc-----hhHhHHHHHHHHhc--CCCEEEEEEchHhccccChhh---H----HHH---HHHHhCCCEEE
Confidence 4689999999873 33444577777664 799999999999864322111 1 011 11111358999
Q ss_pred cccCCCCCHHHHHHHHHHHHh
Q 037423 396 VSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+||++|.|++++++++.+.+.
T Consensus 144 ~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 144 LSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp CBGGGTBSHHHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999988763
No 9
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=172.63 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=121.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+.++|+++|.+|+|||||++++++........++++.+.....+.+++ ..+.+|||||....... ...++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 79 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI--------TSTYY 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC--------CGGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh--------HHHHh
Confidence 457899999999999999999998877666677777777777777777 67899999997543321 11222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
..+|++++|+|+++ +.+......|+..+.....+.|+++|+||+|+........ .....+....+.++
T Consensus 80 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 147 (181)
T 3tw8_B 80 -RGTHGVIVVYDVTS--AESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVET---------EDAYKFAGQMGIQL 147 (181)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCCE
T ss_pred -ccCCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCH---------HHHHHHHHHcCCeE
Confidence 33589999999984 4566676778888888777899999999999875432210 11122222224589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+++||++|.|+++++++|.+.+.....
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 148 FETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998866543
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.85 E-value=1.1e-20 Score=185.41 Aligned_cols=169 Identities=24% Similarity=0.302 Sum_probs=123.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...|+++|+||+|||||+|++++.++ .+++.|+||++...+.+..++.++++|||||+.+........+...+..++..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 45799999999999999999998876 56788899998887777778899999999999865432222233334445544
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
+|++++|+|++. +.+..+.. ++..+.....+.|+++|+||+|+..... +. ......+ ....++++
T Consensus 87 -ad~il~VvD~~~--~~~~~~~~-i~~~l~~~~~~~p~ilV~NK~Dl~~~~~------~~---~~~~~~~--~~~~~~~~ 151 (301)
T 1wf3_A 87 -VNAVVWVVDLRH--PPTPEDEL-VARALKPLVGKVPILLVGNKLDAAKYPE------EA---MKAYHEL--LPEAEPRM 151 (301)
T ss_dssp -CSEEEEEEETTS--CCCHHHHH-HHHHHGGGTTTSCEEEEEECGGGCSSHH------HH---HHHHHHT--STTSEEEE
T ss_pred -CCEEEEEEECCC--CCChHHHH-HHHHHHhhcCCCCEEEEEECcccCCchH------HH---HHHHHHh--cCcCcEEE
Confidence 499999999984 46666543 4556665444789999999999975431 01 1112222 22347899
Q ss_pred cccCCCCCHHHHHHHHHHHHhcccc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+||++|.|++++++.+.+.+.....
T Consensus 152 iSA~~g~gv~~l~~~l~~~l~~~~~ 176 (301)
T 1wf3_A 152 LSALDERQVAELKADLLALMPEGPF 176 (301)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCBCCC
T ss_pred EeCCCCCCHHHHHHHHHHhcccCCC
Confidence 9999999999999999988765443
No 11
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=170.85 Aligned_cols=166 Identities=20% Similarity=0.155 Sum_probs=122.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||...... ....++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 86 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------ITSSYY 86 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT--------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh--------hHHHHH
Confidence 346899999999999999999998877666667777777777777776 5689999999754321 223334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.+
T Consensus 87 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~ 154 (196)
T 3tkl_A 87 RG-AHGIIVVYDVTD--QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDY---------TTAKEFADSLGIP 154 (196)
T ss_dssp TT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH---------HHHHHHHHHTTCC
T ss_pred hh-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCH---------HHHHHHHHHcCCc
Confidence 44 589999999984 345566666877777654 3689999999999976543211 1122333334568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
++++||++|.|++++++++.+.+......
T Consensus 155 ~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 155 FLETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988765443
No 12
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.85 E-value=1.2e-20 Score=165.34 Aligned_cols=158 Identities=23% Similarity=0.309 Sum_probs=107.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
++|+++|.+|+|||||++++.+... .+...+++|.+.....+..++..+.+|||||...... ....+.......+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~- 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-WEKKIQEKVDRALED- 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-CCHHHHHHHHHHTTT-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-hHHHHHHHHHHHHHh-
Confidence 5799999999999999999998765 3677888888888888888889999999999876432 112223333334444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.+++++|+|++. +.+..+.. +...+... +.|+++|+||+|+.+... + ..++...+..+++++
T Consensus 80 ~~~~i~v~d~~~--~~~~~~~~-~~~~~~~~--~~p~ilv~nK~Dl~~~~~------~-------~~~~~~~~~~~~~~~ 141 (161)
T 2dyk_A 80 AEVVLFAVDGRA--ELTQADYE-VAEYLRRK--GKPVILVATKVDDPKHEL------Y-------LGPLYGLGFGDPIPT 141 (161)
T ss_dssp CSEEEEEEESSS--CCCHHHHH-HHHHHHHH--TCCEEEEEECCCSGGGGG------G-------CGGGGGGSSCSCEEC
T ss_pred CCEEEEEEECCC--cccHhHHH-HHHHHHhc--CCCEEEEEECcccccchH------h-------HHHHHhCCCCCeEEE
Confidence 489999999984 45555433 44444443 789999999999975421 0 111222222379999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~~~l 415 (435)
||++|.|++++++++.+.+
T Consensus 142 Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 142 SSEHARGLEELLEAIWERL 160 (161)
T ss_dssp BTTTTBSHHHHHHHHHHHC
T ss_pred ecccCCChHHHHHHHHHhC
Confidence 9999999999999998765
No 13
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=7.5e-21 Score=176.63 Aligned_cols=176 Identities=17% Similarity=0.202 Sum_probs=121.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC--CccccCCceeeeeeEEEEE-eCCceEEEEeCCCCCCCCch--hhhHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK--PEVCNYPFTTRGILMGHIN-LGYQNFQITDTPGLLQRRDE--DRNNLEKLT 309 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~--~~v~~~~~tT~~~~~~~~~-~~~~~~~liDTpG~~~~~~~--~~~~ie~~~ 309 (435)
...++|+++|.+|+|||||+|++++.. ..++..+++|.+.....+. .++..+.+|||||+...... ..+.+..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 356899999999999999999999876 3778888999987766665 55688999999998654221 123333444
Q ss_pred HHHHhcC--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh-
Q 037423 310 LAVLTHL--PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR- 386 (435)
Q Consensus 310 ~~~l~~~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 386 (435)
..++... .|++++|+|++ .+.+..+.. ++..+... +.|+++|+||+|+............. ...+..+.
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~--~~~~~~~~~-~~~~l~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~---~~~l~~~~~ 178 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDAR--RPLTELDRR-MIEWFAPT--GKPIHSLLTKCDKLTRQESINALRAT---QKSLDAYRD 178 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETT--SCCCHHHHH-HHHHHGGG--CCCEEEEEECGGGSCHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCC--CCCCHHHHH-HHHHHHhc--CCCEEEEEeccccCChhhHHHHHHHH---HHHHHhhhh
Confidence 4445443 46799999998 455555544 66666663 78999999999998643211111111 11111111
Q ss_pred --hcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 387 --KMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 387 --~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.....+++++||++|.|+++++++|.+.+...
T Consensus 179 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 179 AGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 12446899999999999999999999988654
No 14
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=167.72 Aligned_cols=167 Identities=17% Similarity=0.086 Sum_probs=112.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCcc-ccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEV-CNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v-~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|.+|+|||||++++++..+.. ...+.++.+.....+..++ ..+.+|||||..... .....+
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~ 80 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR--------SVTHAY 80 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH--------HHHHHH
Confidence 45689999999999999999999876632 3344455555555556665 378999999975422 122233
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
+.. .|++++|+|++. +.+.++...|+..+.... .+.|+++|+||+|+........ .....+....+.
T Consensus 81 ~~~-~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~ 148 (180)
T 2g6b_A 81 YRD-AHALLLLYDVTN--KASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKR---------EDGEKLAKEYGL 148 (180)
T ss_dssp GGG-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCH---------HHHHHHHHHHTC
T ss_pred ccC-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCH---------HHHHHHHHHcCC
Confidence 334 489999999984 345666667788777754 4789999999999986542211 111122222245
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDRI 422 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~ 422 (435)
+++++||++|.|++++++++.+.+.+...++
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 179 (180)
T 2g6b_A 149 PFMETSAKTGLNVDLAFTAIAKELKRRSMKA 179 (180)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHC-----
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHHhccC
Confidence 8999999999999999999999987765544
No 15
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.84 E-value=1.2e-19 Score=164.68 Aligned_cols=167 Identities=20% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh--hhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED--RNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~ie~~~~ 310 (435)
...++|+++|.+|+|||||+|++++..+ .+.+.+++|.+...... +.++.+|||||+.+..... .+.+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3578999999999999999999998763 45667777777654433 3479999999976543221 222333333
Q ss_pred HHHhcC--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh-hhh
Q 037423 311 AVLTHL--PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS-YRK 387 (435)
Q Consensus 311 ~~l~~~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~ 387 (435)
.++... .+++++|+|++ .+.+..+.. ++..+.. .+.|+++|+||+|+...... ......+.. +..
T Consensus 98 ~~~~~~~~~~~~i~v~d~~--~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~-------~~~~~~~~~~~~~ 165 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLR--HAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKW-------DKHAKVVRQTLNI 165 (195)
T ss_dssp HHHHHCTTEEEEEEEEETT--SCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGH-------HHHHHHHHHHHTC
T ss_pred HHHhhhhcCCEEEEEEECC--CCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHH-------HHHHHHHHHHHcc
Confidence 444433 27899999998 456666653 4455554 37899999999999764321 111122222 322
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
....+++++||++|.|+++++++|.+.+.
T Consensus 166 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 166 DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 34568999999999999999999998764
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=3.3e-20 Score=191.19 Aligned_cols=164 Identities=22% Similarity=0.281 Sum_probs=112.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch-hhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE-DRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~ie~~~~~~l~~ 315 (435)
++|+++|+||||||||+|++++.+. .+++.|++|++...+.+.+++..+.+|||||+...... ....+..++..++..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 5799999999999999999998764 57899999999999999999999999999998753211 123355556666666
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
. |++++|+|++ .+.+..+.. +...+... ++|+++|+||+|+.... ......++...+..++++
T Consensus 82 a-d~il~V~D~~--~~~~~~d~~-i~~~l~~~--~~p~ilv~NK~D~~~~~-----------~~~~~~~~~~lg~~~~~~ 144 (439)
T 1mky_A 82 A-DLVLFVVDGK--RGITKEDES-LADFLRKS--TVDTILVANKAENLREF-----------EREVKPELYSLGFGEPIP 144 (439)
T ss_dssp C-SEEEEEEETT--TCCCHHHHH-HHHHHHHH--TCCEEEEEESCCSHHHH-----------HHHTHHHHGGGSSCSCEE
T ss_pred C-CEEEEEEECC--CCCCHHHHH-HHHHHHHc--CCCEEEEEeCCCCcccc-----------HHHHHHHHHhcCCCCEEE
Confidence 4 9999999988 567776643 44445544 79999999999975210 000102233333346899
Q ss_pred cccCCCCCHHHHHHHHHHHHhcc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+||++|.|+++|++++.+.+.+.
T Consensus 145 iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 145 VSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EeccCCCCHHHHHHHHHHhcccc
Confidence 99999999999999999988653
No 17
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.84 E-value=1.6e-20 Score=180.03 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=118.7
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh-h-hHHHHHHHHHH-h
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED-R-NNLEKLTLAVL-T 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~-~-~~ie~~~~~~l-~ 314 (435)
++|+++|.+|+|||||+|+|++....+++.|++|.+...+.+.+++..+.+|||||+....... . ...+.....++ .
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 5799999999999999999999988899999999999999999999999999999997654310 0 11122333333 2
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..+|++++|+|+++ .+....+...+.+. +.|+++|+||+|+......... ...+. ...+.+++
T Consensus 82 ~~~d~vi~VvDas~-----~~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~~~~~~~-------~~~l~---~~lg~~vi 144 (256)
T 3iby_A 82 LEYDCIINVIDACH-----LERHLYLTSQLFEL--GKPVVVALNMMDIAEHRGISID-------TEKLE---SLLGCSVI 144 (256)
T ss_dssp SCCSEEEEEEEGGG-----HHHHHHHHHHHTTS--CSCEEEEEECHHHHHHTTCEEC-------HHHHH---HHHCSCEE
T ss_pred CCCCEEEEEeeCCC-----chhHHHHHHHHHHc--CCCEEEEEEChhcCCcCCcHHH-------HHHHH---HHcCCCEE
Confidence 44699999999983 23333455556554 7999999999998754422211 11111 11146899
Q ss_pred EcccCCCCCHHHHHHHHHHH
Q 037423 395 RVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~ 414 (435)
++||++|.|++++++++.+.
T Consensus 145 ~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 145 PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ECBGGGTBSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999887
No 18
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.84 E-value=2.2e-20 Score=174.67 Aligned_cols=162 Identities=23% Similarity=0.167 Sum_probs=111.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+.++|+++|.+|||||||++++....+.....|....+.....+..++ ..+.||||+|..+... +...++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~--------l~~~~~ 83 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS--------LIPSYI 83 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG--------GHHHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh--------HHHHHh
Confidence 457899999999999999999998776443333333455444555555 4678999999865432 223334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .++++++|+|++. ..+++....|+..+.... .+.|+++|+||+|+.+...+.. .....++...+.+
T Consensus 84 ~-~a~~~ilv~di~~--~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~---------~e~~~~a~~~~~~ 151 (216)
T 4dkx_A 84 R-DSAAAVVVYDITN--VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSI---------EEGERKAKELNVM 151 (216)
T ss_dssp T-TCSEEEEEEETTC--HHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCE
T ss_pred c-cccEEEEEeecch--hHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccH---------HHHhhHHHHhCCe
Confidence 4 4589999999994 467788888888887653 5689999999999976543221 1223333333568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.||+++|+.|.+.+..
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred eEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 19
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=1.6e-20 Score=167.50 Aligned_cols=168 Identities=16% Similarity=0.145 Sum_probs=117.4
Q ss_pred CCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 234 DLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 234 ~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..+.++|+++|.+|+|||||++++++..+.....+++|.+.....+.+++..+.+|||||........ . ..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~-~~ 75 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR--------A-RG 75 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC--------C-SS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH--------H-HH
Confidence 35678999999999999999999998887766777777777777788888999999999986543221 0 11
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC--CC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG--PD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 391 (435)
...+|++++|+|++. +...+... .+..+.. .+.|+++|+||+|+..... .+..........+.... ..
T Consensus 76 ~~~~d~~i~v~d~~~--~~~~~~~~-~l~~~~~--~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 76 AQVTDIVILVVAADD--GVMPQTVE-AINHAKA--ANVPIIVAINKMDKPEANP-----DRVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp CCCCCEEEEEEETTC--CCCHHHHH-HHHHHGG--GSCCEEEEEETTTSSCSCH-----HHHHHHHTTTTCCBTTTTSSE
T ss_pred HhhCCEEEEEEECCC--CCcHHHHH-HHHHHHh--CCCCEEEEEECccCCcCCH-----HHHHHHHHhcCcChhHcCCcc
Confidence 233589999999884 34444443 4444443 3789999999999976420 01100000000111111 14
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+++++||++|.|+++++++|.+.+.....
T Consensus 146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 146 IFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 79999999999999999999998876543
No 20
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.83 E-value=4.4e-20 Score=163.25 Aligned_cols=161 Identities=17% Similarity=0.052 Sum_probs=106.1
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|++|+|||||++++++........+.++.+.....+.+++ ..+.+|||||..+.... ....++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~ 75 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW-------LQDHCLQT 75 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---------------CHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------hhhhhhcc
Confidence 5799999999999999999987665444445556666666666666 46789999998653211 11122333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
+|++++|+|+++ ..+.+....|+..+..... +.|+++|+||+|+.+..... ......+....+.++
T Consensus 76 -~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~ 143 (169)
T 3q85_A 76 -GDAFLIVFSVTD--RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS---------LEEGRHLAGTLSCKH 143 (169)
T ss_dssp -CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTCEE
T ss_pred -CCEEEEEEECCC--hHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC---------HHHHHHHHHHcCCcE
Confidence 489999999984 3456666677777777543 78999999999997543221 112223333345689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.|++++++++.+.+..
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 144 IETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEecCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998754
No 21
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=3.2e-20 Score=163.90 Aligned_cols=161 Identities=20% Similarity=0.173 Sum_probs=110.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||....... ...++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~~~ 74 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI--------TTAYYR 74 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC--------CHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh--------HHHHhc
Confidence 35799999999999999999998776555555666666666666665 46899999997543321 222333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++ +.+......|+..+.... .+.|+++|+||+|+.... .. . .....+....+.++
T Consensus 75 ~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~---~------~~~~~~~~~~~~~~ 141 (170)
T 1g16_A 75 G-AMGIILVYDITD--ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VT---A------DQGEALAKELGIPF 141 (170)
T ss_dssp T-EEEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC-SC---H------HHHHHHHHHHTCCE
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc-cC---H------HHHHHHHHHcCCeE
Confidence 3 489999999984 345556666777777654 468999999999994322 11 0 11112222223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|++++++++.+.+.+.
T Consensus 142 ~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 142 IESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988654
No 22
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.83 E-value=4.6e-20 Score=176.98 Aligned_cols=161 Identities=23% Similarity=0.264 Sum_probs=121.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-c
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-H 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~ 315 (435)
..+|+++|.+|+|||||+|+|++....++++|++|.+...+.+..++..+.+|||||+....... .-+.....++. .
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSS--IDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSS--HHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCC--HHHHHHHHHHhhc
Confidence 46899999999999999999999888889999999999999998888999999999987654321 11223333443 4
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.+|++++|+|+++. +....|...+.+. +.|+++|+||+|+........ + ...+ ....+.++++
T Consensus 83 ~~d~ii~V~D~t~~-----~~~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~---~----~~~l---~~~lg~~vi~ 145 (258)
T 3a1s_A 83 DADLVILVADSVNP-----EQSLYLLLEILEM--EKKVILAMTAIDEAKKTGMKI---D----RYEL---QKHLGIPVVF 145 (258)
T ss_dssp CCSEEEEEEETTSC-----HHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCB---C----HHHH---HHHHCSCEEE
T ss_pred CCCEEEEEeCCCch-----hhHHHHHHHHHhc--CCCEEEEEECcCCCCccchHH---H----HHHH---HHHcCCCEEE
Confidence 56999999999842 2333466777665 799999999999865432211 1 1111 1112468999
Q ss_pred cccCCCCCHHHHHHHHHHHHh
Q 037423 396 VSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+||++|.|++++++++.+.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 146 TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHhh
Confidence 999999999999999999875
No 23
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.83 E-value=4.8e-20 Score=165.80 Aligned_cols=165 Identities=19% Similarity=0.177 Sum_probs=115.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCce--EEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN--FQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++++..+ ...+++|+.+.....+..++.. +.+|||||...... ....++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 74 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------MRDQYMR 74 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT--------THHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH--------HHHHHHh
Confidence 46899999999999999999997664 3455666666666666666654 67899999765432 1222333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. ++++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+....... .....+....+.+
T Consensus 75 ~-~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~----------~~~~~~~~~~~~~ 141 (189)
T 4dsu_A 75 T-GEGFLCVFAINN--TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDT----------KQAQDLARSYGIP 141 (189)
T ss_dssp H-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCH----------HHHHHHHHHHTCC
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCH----------HHHHHHHHHcCCe
Confidence 3 489999999984 345566666777777643 468999999999997543111 1112222222468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhccccccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMDRIK 423 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~ 423 (435)
++++||++|.|++++++++.+.+.....+.+
T Consensus 142 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 142 FIETSAKTRQGVDDAFYTLVREIRKHKEKMS 172 (189)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999998876655443
No 24
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.83 E-value=7e-20 Score=163.17 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=111.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||.... ......++
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~ 77 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF--------RSLRTPFY 77 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG--------HHHHGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh--------hhhHHHHH
Confidence 346899999999999999999998766544455555555566666666 47899999997432 12222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK- 387 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 387 (435)
..++++++|+|++. +.+.++...|+..+.... .+.|+++|+||+|+.... .. ......+..
T Consensus 78 -~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~---------~~~~~~~~~~ 144 (177)
T 1wms_A 78 -RGSDCCLLTFSVDD--SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VS---------TEEAQAWCRD 144 (177)
T ss_dssp -TTCSEEEEEEETTC--HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SC---------HHHHHHHHHH
T ss_pred -hcCCEEEEEEECcC--HHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cC---------HHHHHHHHHh
Confidence 33589999999984 345566666777776543 468999999999997322 11 011222222
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
....+++++||++|.|++++++++.+.+..
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 145 NGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp TTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999999999999998754
No 25
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.83 E-value=4.5e-20 Score=165.96 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=116.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|++|+|||||++++++..+.....+.++.+.....+..++ ..+.+|||||.... ......++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~ 80 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF--------RSVTRSYY 80 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHTTS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH--------HHHHHHHH
Confidence 457899999999999999999998776555555556666666666666 57899999997432 12222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .+|++++|+|+++ +.+.+....|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 81 ~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 148 (186)
T 2bme_A 81 R-GAAGALLVYDITS--RETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVT---------FLEASRFAQENELM 148 (186)
T ss_dssp T-TCSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTCE
T ss_pred h-cCCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---------HHHHHHHHHHcCCE
Confidence 3 3589999999984 345666666777776643 478999999999996533211 01122233334568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.|++++++++.+.+...
T Consensus 149 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 149 FLETSALTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 26
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=164.14 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=103.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc-cccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE-VCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~-v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|++|+|||||++++.+.... ..+.++++ .....+.+++ ..+.+|||||...... .. ....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~-~~~~ 73 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDK------SW-SQES 73 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------------CH-HHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccch------hh-hHHh
Confidence 3468999999999999999999987652 22333333 2334445555 4678999999864210 11 1223
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+...++++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+.+...... .....+....+
T Consensus 74 ~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~---------~~~~~~~~~~~ 142 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIAD--RGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSV---------EEGRACAVVFD 142 (175)
T ss_dssp TTTSCSEEEEEEETTC--HHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCH---------HHHHHHHHHHT
T ss_pred hcccCCEEEEEEECCC--HHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCH---------HHHHHHHHHcC
Confidence 3344589999999984 345566666777776642 3789999999999976542211 11112222223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+++++||++|.|+++++++|.+.+...
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 143 CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999987543
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.4e-20 Score=166.96 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=110.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||.... ......++
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~ 96 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF--------NSITSAYY 96 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH--------HHHHHHHh
Confidence 446799999999999999999998776444444455556566666665 47899999997432 22333444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 391 (435)
.. +|++++|+|+++ +.+.++...|+..+.... .+.|+++|+||+|+........ .....+... ...
T Consensus 97 ~~-~d~iilV~D~~~--~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~---------~~~~~~~~~~~~~ 164 (192)
T 2il1_A 97 RS-AKGIILVYDITK--KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITR---------QQGEKFAQQITGM 164 (192)
T ss_dssp HH-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH---------HHHHHHHHTSTTC
T ss_pred cC-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH---------HHHHHHHHhcCCC
Confidence 44 489999999984 456666666777777654 3689999999999975432110 112222222 356
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++++||++|.|+++++++|.+.+.+
T Consensus 165 ~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 165 RFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999987753
No 28
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.83 E-value=4.5e-19 Score=160.19 Aligned_cols=168 Identities=23% Similarity=0.221 Sum_probs=114.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch--hhhHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE--DRNNLEKLTLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~--~~~~ie~~~~~ 311 (435)
...++|+++|.+|+|||||+|++++... ...+.+++|.+...... +.++.+|||||+...... ....+..+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3567999999999999999999998763 55667777777654333 457899999997654322 12223333334
Q ss_pred HHhcC--CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-
Q 037423 312 VLTHL--PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM- 388 (435)
Q Consensus 312 ~l~~~--~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~- 388 (435)
++... .+++++|+|++. +.+..+.. +...+... +.|+++|+||+|+.+... ..........+...
T Consensus 98 ~~~~~~~~~~vi~v~d~~~--~~~~~~~~-~~~~~~~~--~~p~i~v~nK~Dl~~~~~-------~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRI--PPQDSDLM-MVEWMKSL--NIPFTIVLTKMDKVKMSE-------RAKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHCTTEEEEEEEEETTS--CCCHHHHH-HHHHHHHT--TCCEEEEEECGGGSCGGG-------HHHHHHHHHHHHHSS
T ss_pred HHhcCcCceEEEEEecCCC--CCCHHHHH-HHHHHHHc--CCCEEEEEEChhcCChHH-------HHHHHHHHHHHHhhc
Confidence 44433 378999999873 44554443 45555554 789999999999985431 11122223333333
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
...+++++||++|.|++++++++.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 44689999999999999999999998753
No 29
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.83 E-value=4.8e-20 Score=167.54 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=114.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
...++|+++|.+|||||||++++++..+....+.. |.+.....+...+..+.+|||||....... ...++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~- 84 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFRGL--------WETYY- 84 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGGGG--------GGGGC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHHHH--------HHHHH-
Confidence 45678999999999999999999988764422222 334555566778889999999998543211 11223
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---------CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF---------SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY 385 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---------~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 385 (435)
..+|++++|+|+++ +.++.....|+..+.... .+.|+++|+||+|+...... .+.. .......+
T Consensus 85 ~~~d~ii~v~D~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~-~~~~~~~~ 157 (199)
T 4bas_A 85 DNIDAVIFVVDSSD--HLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA----AELV-EILDLTTL 157 (199)
T ss_dssp TTCSEEEEEEETTC--GGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH----HHHH-HHHTHHHH
T ss_pred hcCCEEEEEEECCc--HHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH----HHHH-HHhcchhh
Confidence 33599999999994 455666666766665431 27899999999999865321 1111 11112222
Q ss_pred hhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 386 RKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 386 ~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
......+++++||++|.||++++++|.+.+.....+
T Consensus 158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 158 MGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp HTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred ccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 133456899999999999999999999988765443
No 30
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.83 E-value=9.9e-20 Score=162.06 Aligned_cols=161 Identities=16% Similarity=0.086 Sum_probs=111.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+..++ ..+.+|||||..+.. .....++
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 85 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR--------AVTRSYY 85 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC--------HHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh--------hhHHHHh
Confidence 457899999999999999999997765332223233333344444544 578999999975432 2233444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|++. +.+.++...|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 86 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 153 (179)
T 1z0f_A 86 RG-AAGALMVYDITR--RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT---------YEEAKQFAEENGLL 153 (179)
T ss_dssp HT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTCE
T ss_pred cc-CCEEEEEEeCcC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---------HHHHHHHHHHcCCE
Confidence 44 489999999984 455666667887777654 478999999999996543211 11222333333568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHh
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++++||++|.|++++++++.+.+.
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 31
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.83 E-value=7e-20 Score=160.90 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=110.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+. ..+++|+.......+..++ ..+.+|||||..+.. .....++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 74 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV-EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------AIRDNYFR 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH--------HHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC-CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH--------HHHHHHhh
Confidence 468999999999999999999977642 3444555555445555555 468999999975421 22333344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. ++++++|+|+++ ..+......|+..+..... +.|+++|+||+|+.+..... ......+....+.+
T Consensus 75 ~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 142 (168)
T 1u8z_A 75 S-GEGFLCVFSITE--MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---------VEEAKNRADQWNVN 142 (168)
T ss_dssp H-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC---------HHHHHHHHHHHTCE
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC---------HHHHHHHHHHcCCe
Confidence 4 489999999984 3455666667777776543 78999999999997543211 01112222222458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|++++++++.+.+.+
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 143 YVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987753
No 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.83 E-value=3.3e-20 Score=163.49 Aligned_cols=162 Identities=19% Similarity=0.104 Sum_probs=113.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|++|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||..+... ....++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 75 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA--------ITKAYY 75 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC--------CCHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH--------HHHHHh
Confidence 346899999999999999999998765444444444555555666654 4789999999754322 122233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.. +|++++|+|+++ ..+.+....|+..+.....+.|+++|+||+|+........ .....+....+.++
T Consensus 76 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 143 (168)
T 1z2a_A 76 RG-AQACVLVFSTTD--RESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKN---------EEAEGLAKRLKLRF 143 (168)
T ss_dssp TT-CCEEEEEEETTC--HHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCEE
T ss_pred cC-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCH---------HHHHHHHHHcCCeE
Confidence 33 589999999984 3455666667777776656799999999999975432110 11122222224589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.|+++++++|.+.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999987743
No 33
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=6.3e-20 Score=168.76 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=116.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||...... ....++
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~ 90 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT--------ITTAYY 90 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC--------CCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------HHHHHh
Confidence 467899999999999999999998776555566666677767777776 5789999999754321 122333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|++. +.+.+....|+..+..... +.|+++|+||+|+.... .. . . ....+....+.+
T Consensus 91 ~~-~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~---~---~---~~~~~~~~~~~~ 157 (213)
T 3cph_A 91 RG-AMGIILVYDVTD--ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VT---A---D---QGEALAKELGIP 157 (213)
T ss_dssp TT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC-SC---H---H---HHHHHHHHHTCC
T ss_pred cc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-cC---H---H---HHHHHHHHcCCE
Confidence 44 489999999984 3455565667777776543 68999999999994322 11 0 1 111122222358
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.||++++++|.+.+.+.
T Consensus 158 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 158 FIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 34
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.83 E-value=5.9e-20 Score=164.61 Aligned_cols=168 Identities=15% Similarity=0.050 Sum_probs=115.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+.++|+++|.+|+|||||++++++..+ ...+++|+.......+..++ ..+.+|||||........ ..++
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~ 75 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQF-VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP--------QTYS 75 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC--------GGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH--------HHHH
Confidence 346899999999999999999996654 34455555555555666666 466899999987643211 1122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
..++++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+....... ......+....+.
T Consensus 76 -~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 76 -IDINGYILVYSVTS--IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS---------YEEGKALAESWNA 143 (181)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTC
T ss_pred -hcCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec---------HHHHHHHHHHhCC
Confidence 23589999999984 345666666777776653 368999999999997544221 1122233333456
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccccccC
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKS 424 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t 424 (435)
+++++||++|.|++++++++.+.+.......+.
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~ 176 (181)
T 3t5g_A 144 AFLESSAKENQTAVDVFRRIILEAEKMDGACSQ 176 (181)
T ss_dssp EEEECCTTSHHHHHHHHHHHHHHHHTC-----C
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHhcCCccc
Confidence 899999999999999999999999877655444
No 35
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.83 E-value=6.1e-20 Score=161.83 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=99.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..+|+++|.+|+|||||++++.+... ...+.+++|... .+..+ ...+.+|||||..... .....++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGR--------WLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccch--------hhhhhhh
Confidence 46899999999999999999987654 344455555532 23333 3567899999986432 1222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
. .++++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+.+...... .....+....+.
T Consensus 71 ~-~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~ 138 (166)
T 3q72_A 71 A-MGDAYVIVYSVTD--KGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV---------DEGRACAVVFDC 138 (166)
T ss_dssp ---CCEEEEEEETTC--HHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCH---------HHHHHHHHHTTC
T ss_pred h-hCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCH---------HHHHHHHHHhCC
Confidence 3 3589999999984 345666666777776642 4789999999999986542211 112223333346
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++++||++|.|++++++++.+.+..
T Consensus 139 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 139 KFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred cEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999998764
No 36
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.83 E-value=1.5e-19 Score=163.86 Aligned_cols=160 Identities=19% Similarity=0.156 Sum_probs=111.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--------------------------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-------------------------------- 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-------------------------------- 283 (435)
...+|+++|++|+|||||++++++..+.....+.+..+.....+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 457899999999999999999998765433333333444444455443
Q ss_pred -------ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 037423 284 -------QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDV 356 (435)
Q Consensus 284 -------~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV 356 (435)
..+.+|||||...... ....++.. +|++++|+|++. +.+.++...|+..+.... +.|+++|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~~-~d~~i~v~D~~~--~~s~~~~~~~~~~i~~~~-~~piilv 153 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYAS--------IVPLYYRG-ATCAIVVFDISN--SNTLDRAKTWVNQLKISS-NYIIILV 153 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTT--------THHHHHTT-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHS-CCEEEEE
T ss_pred ccCccceeEEEEEECCCcHHHHH--------HHHHHhcC-CCEEEEEEECCC--HHHHHHHHHHHHHHHhhC-CCcEEEE
Confidence 6789999999754321 23333444 489999999983 455666667888887764 5899999
Q ss_pred EeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 357 VSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+||+| ....... ......+....+.+++++||++|.|+++++++|.+.+.+
T Consensus 154 ~NK~D-~~~~~~~---------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 154 ANKID-KNKFQVD---------ILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EECTT-CC-CCSC---------HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EECCC-cccccCC---------HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999 3222111 112223333345689999999999999999999988754
No 37
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.83 E-value=3.6e-20 Score=165.23 Aligned_cols=163 Identities=15% Similarity=0.077 Sum_probs=112.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC---ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY---QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
+..+|+++|.+|+|||||++++.+..+.....+.++.+.....+.+++ ..+.+|||||...... ....+
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~ 76 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK--------MLDKY 76 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT--------THHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc--------hhhHH
Confidence 457899999999999999999997765332233333556666677665 6899999999865432 12233
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCc-EEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
+.. +|++++|+|+++ +.+.++...|+..+.... .+.| +++|+||+|+........ .....+...
T Consensus 77 ~~~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~---------~~~~~~~~~ 144 (178)
T 2hxs_A 77 IYG-AQGVLLVYDITN--YQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKP---------EKHLRFCQE 144 (178)
T ss_dssp HTT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCH---------HHHHHHHHH
T ss_pred Hhh-CCEEEEEEECCC--HHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCH---------HHHHHHHHH
Confidence 444 589999999984 345556666777776632 2456 899999999975332110 111122222
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+.+++++||++|.|+++++++|.+.+...
T Consensus 145 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 145 NGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 245899999999999999999999987654
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=8e-20 Score=167.27 Aligned_cols=165 Identities=18% Similarity=0.075 Sum_probs=117.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|||||||++++++........++++.+.....+.+++. .+.+|||||..... .. +...++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~---~~~~~~ 94 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----GW---LRDHCL 94 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----HH---HHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----hh---hHHHhh
Confidence 4578999999999999999999865544455666777776666667664 56889999985421 11 122233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.. ++++++|+|+++ ..++.....|+..+.... .+.|+++|+||+|+....... ......+....+.
T Consensus 95 ~~-~d~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---------~~~~~~~a~~~~~ 162 (195)
T 3cbq_A 95 QT-GDAFLIVFSVTD--RRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS---------LEEGRHLAGTLSC 162 (195)
T ss_dssp HH-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTC
T ss_pred cc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcC---------HHHHHHHHHHhCC
Confidence 33 489999999984 345666667888877653 378999999999997643221 0112223333346
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++++||++|.|++++++++.+.+....
T Consensus 163 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 163 KHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999886543
No 39
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=1e-19 Score=167.09 Aligned_cols=163 Identities=21% Similarity=0.166 Sum_probs=118.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++.+..+.....+.++.+.....+.+++ ..+.+|||||..+.... ...++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 79 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI--------TSSYYR 79 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC--------CGGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH--------HHHhcc
Confidence 46899999999999999999998776555556666666666666665 47899999997654321 112233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+|++++|+|++. +.+.++...|+..+.... .+.|+++|+||+|+........ .....+....+.++
T Consensus 80 -~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 147 (206)
T 2bcg_Y 80 -GSHGIIIVYDVTD--QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY---------DVAKEFADANKMPF 147 (206)
T ss_dssp -TCSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH---------HHHHHHHHHTTCCE
T ss_pred -CCCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---------HHHHHHHHHcCCeE
Confidence 3589999999984 455666667888877653 4689999999999976532210 11222333334689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++||++|.|++++++++.+.+....
T Consensus 148 ~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 148 LETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 40
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=166.57 Aligned_cols=163 Identities=21% Similarity=0.157 Sum_probs=111.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++.+..+.....+..+.+.....+.+++ ..+.+|||||..+. ......++
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~ 99 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF--------RTITQSYY 99 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG--------HHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH--------HHHHHHHH
Confidence 346899999999999999999997765433333333455556666666 57899999997432 22333444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC-
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD- 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 391 (435)
.. +|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+....... ......+....+.
T Consensus 100 ~~-~d~iilv~D~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~---------~~~~~~~~~~~~~~ 167 (201)
T 2hup_A 100 RS-ANGAILAYDITK--RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS---------LAEAQSLAEHYDIL 167 (201)
T ss_dssp TT-CSEEEEEEETTB--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTCS
T ss_pred hh-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC---------HHHHHHHHHHcCCC
Confidence 44 489999999984 345666667888887754 568999999999997533211 1112223333345
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|.||++++++|.+.+...
T Consensus 168 ~~~~~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 168 CAIETSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999987654
No 41
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.82 E-value=8.3e-20 Score=160.25 Aligned_cols=160 Identities=19% Similarity=0.113 Sum_probs=109.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++.+..+.. .+..++.+.....+..++. .+.+|||||..+.. .....++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~ 73 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE-KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------SMRDLYIK 73 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--------HHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc-cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHHhc
Confidence 4689999999999999999998766532 3334444444555555554 48899999975432 12233344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +++++|+|+++ ..+.++...|+..+.... .+.|+++|+||+|+........ .....+....+.+
T Consensus 74 ~~-~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~ 141 (167)
T 1kao_A 74 NG-QGFILVYSLVN--QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSS---------SEGRALAEEWGCP 141 (167)
T ss_dssp HC-SEEEEEEETTC--HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHHTSC
T ss_pred cC-CEEEEEEeCCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCH---------HHHHHHHHHhCCC
Confidence 43 88999999984 345556666777776643 4789999999999875432211 1111222222458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|+++++++|.+.+.+
T Consensus 142 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 142 FMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999988754
No 42
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=166.27 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=115.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+.++|+++|.+|+|||||++++++..+ ...+++|+.+.....+.+++. .+.+|||||..+.. .....++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 83 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------AIRDNYF 83 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--------HHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH--------HHHHHHH
Confidence 457899999999999999999997764 345556666655556666663 78999999976532 1223334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.. .+++++|+|+++ ..+......|+..+..... +.|+++|+||+|+....... ......+....+.
T Consensus 84 ~~-~~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 151 (206)
T 2bov_A 84 RS-GEGFLCVFSITE--MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAEQWNV 151 (206)
T ss_dssp HH-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHHHTC
T ss_pred hh-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc---------HHHHHHHHHHhCC
Confidence 44 489999999984 3455666667777777643 78999999999997643211 0111222222235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|.|+++++++|.+.+...
T Consensus 152 ~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 152 NYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 899999999999999999999987654
No 43
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.82 E-value=1.2e-19 Score=162.74 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=115.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|+|||||++++++..+ ...+++|+.+.....+..++ ..+.+|||||..+.. .....++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 87 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------AIRDNYF 87 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--------HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH--------HHHHHHh
Confidence 457899999999999999999997664 33455566555555556665 468999999976432 1233334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.. .+++++|+|+++ ..+.+....|+..+..... +.|+++|+||+|+....... ......+....+.
T Consensus 88 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 155 (187)
T 2a9k_A 88 RS-GEGFLCVFSITE--MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS---------VEEAKNRAEQWNV 155 (187)
T ss_dssp HH-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTC
T ss_pred cc-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC---------HHHHHHHHHHcCC
Confidence 44 489999999984 3455566667777776543 78999999999997543211 1122223333346
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|.|+++++++|.+.+...
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 156 NYVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999987654
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.82 E-value=1.7e-19 Score=160.76 Aligned_cols=164 Identities=18% Similarity=0.132 Sum_probs=114.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...++|+++|.+|+|||||++++++..+ ...+++|+.......+..++ ..+.+|||||..+.... ...+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------~~~~ 77 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM--------REQY 77 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC--------HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH--------HHHH
Confidence 3557899999999999999999997754 34455666555555566665 46789999998654321 2223
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+.. ++++++|+|+++ ..+......|+..+.... .+.|+++|+||+|+........ .....+....+
T Consensus 78 ~~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~ 145 (181)
T 2fn4_A 78 MRA-GHGFLLVFAIND--RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPR---------SEASAFGASHH 145 (181)
T ss_dssp HHH-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHTT
T ss_pred Hhh-CCEEEEEEeCCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCH---------HHHHHHHHHcC
Confidence 333 489999999984 344555556776664432 4689999999999975432210 11222333335
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.+++++||++|.|+++++++|.+.+....
T Consensus 146 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 146 VAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999886554
No 45
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.1e-19 Score=163.81 Aligned_cols=166 Identities=19% Similarity=0.268 Sum_probs=121.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT- 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~- 314 (435)
+..+|+++|++|+|||||++++++..+.++.++++|.+...+.+.+++..+.+|||||........ ..+.....++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS--IDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS--HHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc--HHHHHHHHHHhc
Confidence 456899999999999999999998888788889999998888888889999999999987653211 11222333333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
..++++++|+|++. .+....|+..+... +.|+++|+||+|+........ + ... +....+.+++
T Consensus 84 ~~~~~~i~v~d~~~-----~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~---~----~~~---~~~~~~~~~~ 146 (188)
T 2wjg_A 84 EKPDLVVNIVDATA-----LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI---D----VDK---LEKILGVKVV 146 (188)
T ss_dssp HCCSEEEEEEEGGG-----HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCCC---C----HHH---HHHHHTSCEE
T ss_pred cCCCEEEEEecchh-----HHHHHHHHHHHHhc--CCCEEEEEEhhhccccccchH---H----HHH---HHHHhCCCeE
Confidence 23589999999872 45555677777663 789999999999865432211 1 111 1111135899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++||++|.|++++++++.+.+.....
T Consensus 147 ~~Sa~~~~~v~~l~~~i~~~~~~~~~ 172 (188)
T 2wjg_A 147 PLSAAKKMGIEELKKAISIAVKDKKT 172 (188)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHTTC--
T ss_pred EEEecCCCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999877653
No 46
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.82 E-value=2.5e-20 Score=180.31 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=122.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh--hhHHHHHHHHHH-
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED--RNNLEKLTLAVL- 313 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~--~~~ie~~~~~~l- 313 (435)
.++|+++|.+|+|||||+|++++....+++.|++|.+...+.+.+++..+.+|||||+.+..... ....+.....++
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 46899999999999999999999988899999999999999999888999999999997754210 011122233333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
...+|++++|+|+++ .+....+...+.+. +.|+++|+||+|+......... ...+ ....+.++
T Consensus 83 ~~~~d~ii~VvD~~~-----~~~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~-------~~~l---~~~lg~~~ 145 (274)
T 3i8s_A 83 SGDADLLINVVDASN-----LERNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIE-------IDAL---SARLGCPV 145 (274)
T ss_dssp HTCCSEEEEEEEGGG-----HHHHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEEEC-------HHHH---HHHHTSCE
T ss_pred hcCCCEEEEEecCCC-----hHHHHHHHHHHHhc--CCCEEEEEECccchhhhhHHHH-------HHHH---HHhcCCCE
Confidence 245699999999883 33444466667766 7999999999998754322111 1111 11123689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|+++++++|.+.+...
T Consensus 146 i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 146 IPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp EECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999998877543
No 47
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.82 E-value=7e-20 Score=161.86 Aligned_cols=162 Identities=22% Similarity=0.187 Sum_probs=110.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+..++ ..+.+|||||..+... ....++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 76 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA--------LGPIYY 76 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC---------------CCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh--------hHHHHh
Confidence 346899999999999999999997766444445455555555566555 3678999999754221 111122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..+|++++|+|+++ +.+.++...|+..+.... .+.|+++|+||+|+.+..... ......+....+.+
T Consensus 77 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 144 (170)
T 1z08_A 77 -RDSNGAILVYDITD--EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS---------IQEAESYAESVGAK 144 (170)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTCE
T ss_pred -ccCCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC---------HHHHHHHHHHcCCe
Confidence 23589999999984 345566666777776543 468999999999997543221 11122233333468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|++++++++.+.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999987753
No 48
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.82 E-value=2.3e-20 Score=167.57 Aligned_cols=162 Identities=18% Similarity=0.106 Sum_probs=92.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++.+..+.....+.++.+.....+.+++ ..+.+|||||...... ....++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~ 79 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT--------ITTAYYR 79 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----------------CCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh--------hHHHHHh
Confidence 46899999999999999999997766544445555666666666666 6789999999754221 1112223
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.++
T Consensus 80 -~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~ 147 (183)
T 2fu5_C 80 -GAMGIMLVYDITN--EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSK---------ERGEKLALDYGIKF 147 (183)
T ss_dssp -TCSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCH---------HHHHHHHHHHTCEE
T ss_pred -cCCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCH---------HHHHHHHHHcCCeE
Confidence 3589999999984 345666667888877653 4689999999999976432210 11122222224689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|+++++++|.+.+...
T Consensus 148 ~~~Sa~~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 148 METSAKANINVENAFFTLARDIKAK 172 (183)
T ss_dssp EECCC---CCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=1.4e-19 Score=159.69 Aligned_cols=160 Identities=20% Similarity=0.165 Sum_probs=108.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCcc--ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEV--CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v--~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++.+..+.. .+..+++.......+......+.+|||||..... ......+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 77 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR--------ALAPMYYR 77 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGTHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh--------cccHhhCc
Confidence 4689999999999999999999876532 2333333333322222223678999999985322 12223344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER-FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~-~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++ +.+.++...|+..+... .++.|+++|+||+|+.+...... .....+....+.++
T Consensus 78 ~-~~~~i~v~d~~~--~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~~ 145 (170)
T 1z0j_A 78 G-SAAAIIVYDITK--EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVME---------RDAKDYADSIHAIF 145 (170)
T ss_dssp T-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCH---------HHHHHHHHHTTCEE
T ss_pred C-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCH---------HHHHHHHHHcCCEE
Confidence 4 489999999984 34556666688888765 35689999999999976432211 11222333334689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|+++++++|.+.+.
T Consensus 146 ~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 146 VETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEeCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.3e-19 Score=162.15 Aligned_cols=163 Identities=17% Similarity=0.100 Sum_probs=111.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|.+|+|||||++++++..+. .. ..|.+.....+.+++..+.+|||||..+.... ...++.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 82 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HT--SPTIGSNVEEIVINNTRFLMWDIGGQESLRSS--------WNTYYT 82 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EE--ECCSCSSCEEEEETTEEEEEEECCC----CGG--------GHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cC--cCCCccceEEEEECCEEEEEEECCCCHhHHHH--------HHHHhc
Confidence 45789999999999999999999976653 11 22344445566778899999999998653321 223333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh--hhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY--RKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 390 (435)
. +|++++|+|+++ +.+.+....|+..+... ..+.|+++|+||+|+...... + ........ ....+
T Consensus 83 ~-~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~----~i~~~~~~~~~~~~~ 151 (187)
T 1zj6_A 83 N-TEFVIVVVDSTD--RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV----A----EISQFLKLTSIKDHQ 151 (187)
T ss_dssp T-CCEEEEEEETTC--TTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCH----H----HHHHHHTGGGCCSSC
T ss_pred C-CCEEEEEEeCCC--HHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCH----H----HHHHHhChhhhcCCC
Confidence 3 599999999984 45677777777777654 257999999999999764311 0 11111111 12233
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.+++++||++|.|+++++++|.+.+....
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 180 (187)
T 1zj6_A 152 WHIQACCALTGEGLCQGLEWMMSRLKIRL 180 (187)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHCC--
T ss_pred cEEEEccCCCCcCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999885543
No 51
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=1.2e-19 Score=163.46 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=111.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeee-EEEEEeCC-----------ceEEEEeCCCCCCCCchhhhH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGIL-MGHINLGY-----------QNFQITDTPGLLQRRDEDRNN 304 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~-~~~~~~~~-----------~~~~liDTpG~~~~~~~~~~~ 304 (435)
..+|+++|.+|+|||||++++++..+.....+..+.+.. ...+..++ ..+.+|||||....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF------- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------
Confidence 468999999999999999999976654333333333333 33444443 47899999998432
Q ss_pred HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHH
Q 037423 305 LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM 382 (435)
Q Consensus 305 ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 382 (435)
......++.. +|++++|+|++. +.+..+...|+..+.... .+.|+++|+||+|+....... ....
T Consensus 84 -~~~~~~~~~~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~ 150 (195)
T 3bc1_A 84 -RSLTTAFFRD-AMGFLLLFDLTN--EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK---------EEEA 150 (195)
T ss_dssp -HHHHHHTTTT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC---------HHHH
T ss_pred -HHHHHHHHcC-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC---------HHHH
Confidence 1223333433 589999999984 455666667888777654 478999999999997543211 0111
Q ss_pred HhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 383 ASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 383 ~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
..+....+.+++++||++|.|+++++++|.+.+....
T Consensus 151 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 151 RELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp HHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 2222222458999999999999999999999886543
No 52
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=2e-19 Score=160.75 Aligned_cols=162 Identities=18% Similarity=0.153 Sum_probs=112.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||...... ....++
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 82 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS--------LAPMYY 82 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG--------GTHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh--------hhHHHh
Confidence 446899999999999999999998766443334444444444455543 5789999999754221 122334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|+++ +.+.+....|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 83 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 150 (181)
T 2efe_B 83 RG-AAAAIIVFDVTN--QASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT---------AEDAQTYAQENGLF 150 (181)
T ss_dssp TT-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC---------HHHHHHHHHHTTCE
T ss_pred cc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC---------HHHHHHHHHHcCCE
Confidence 33 489999999984 445566667888887754 468999999999997654221 11122233333568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|+++++++|.+.+..
T Consensus 151 ~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 151 FMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp EEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 53
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.3e-19 Score=159.68 Aligned_cols=163 Identities=23% Similarity=0.169 Sum_probs=110.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|++|+|||||++++.+..+.....+..+.+.....+.+++ ..+.+|||||..... .....++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 74 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA--------SLAPXYYR 74 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh--------hhhhhhhc
Confidence 35799999999999999999997765433334444444444455544 478999999975422 12333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++ +.+..+...|+..+.... .+.|+++|+||+|+...........+ ....+....+.++
T Consensus 75 ~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~------~~~~~~~~~~~~~ 145 (170)
T 1ek0_A 75 N-AQAALVVYDVTK--PQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVARE------EGEKLAEEKGLLF 145 (170)
T ss_dssp T-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHH------HHHHHHHHHTCEE
T ss_pred c-CcEEEEEEecCC--hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHH------HHHHHHHHcCCEE
Confidence 4 489999999984 445666666777777654 47899999999999765321111111 1112222224589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|++++++++.+.+.
T Consensus 146 ~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 146 FETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=2.8e-19 Score=157.32 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=108.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++.+..+. ..+..|+.......+..++ ..+.+|||||...... ....++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 73 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------MRDLYMK 73 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------HHHHHhc
Confidence 457999999999999999999976553 2333444444444444443 4688999999865432 1223333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPD 391 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 391 (435)
. ++++++|+|+++. .+.+....|+..+... ..+.|+++|+||+|+.+..... ......+... ...
T Consensus 74 ~-~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 141 (167)
T 1c1y_A 74 N-GQGFALVYSITAQ--STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG---------KEQGQNLARQWCNC 141 (167)
T ss_dssp H-CSEEEEEEETTCH--HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHHTTSC
T ss_pred c-CCEEEEEEECCCH--HHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC---------HHHHHHHHHHccCC
Confidence 3 4899999999843 4455555677666654 2478999999999997543211 0111222222 246
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++++||++|.|+++++++|.+.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998763
No 55
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.82 E-value=9.3e-20 Score=168.79 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=117.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC-C--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG-Y--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~-~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|.+|+|||||+|++++..+.....+..+.......+... + ..+.+|||||....... ....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~ 81 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------KDVY 81 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC--------CHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH--------HHHH
Confidence 45689999999999999999999766532111111111112222222 2 56899999997654321 1122
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS-DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~-~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
+. .+|++++|+|++ .+.+.++...|+..+..... +.|+++|+||+|+....... ......+....+.
T Consensus 82 ~~-~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~ 149 (218)
T 4djt_A 82 YI-GASGAILFFDVT--SRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKIS---------KKLVMEVLKGKNY 149 (218)
T ss_dssp HT-TCSEEEEEEETT--CHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CC---------HHHHHHHTTTCCC
T ss_pred hh-cCCEEEEEEeCC--CHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC---------HHHHHHHHHHcCC
Confidence 33 358999999998 44566777677777776543 48999999999997643221 1223334444567
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccccccCCCCC
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSRSNE 428 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~~~ 428 (435)
+++++||++|.|+++++++|.+.+.....+..+....
T Consensus 150 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~ 186 (218)
T 4djt_A 150 EYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVN 186 (218)
T ss_dssp EEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBCSCCC
T ss_pred cEEEEecCCCCCHHHHHHHHHHHHhcccccccccccC
Confidence 8999999999999999999999999888887766554
No 56
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=2.7e-20 Score=191.67 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=105.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.++|+++|+||||||||+|+|++.+. .+++.+++|++.....+.+++..+.+|||||+..........+..++..++..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 36899999999999999999998654 57889999999998888888999999999999643322223444555556666
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
. |++++|+|++ .+.+..+.. +...+.. .++|+++|+||+|+....... .++...+..++++
T Consensus 83 a-d~il~vvD~~--~~~~~~d~~-~~~~l~~--~~~pvilv~NK~D~~~~~~~~-------------~~~~~lg~~~~~~ 143 (436)
T 2hjg_A 83 A-DVIIFMVNGR--EGVTAADEE-VAKILYR--TKKPVVLAVNKLDNTEMRANI-------------YDFYSLGFGEPYP 143 (436)
T ss_dssp C-SEEEEEEETT--TCSCHHHHH-HHHHHTT--CCSCEEEEEECCCC-----CC-------------CSSGGGSSCCCEE
T ss_pred C-CEEEEEEeCC--CCCCHHHHH-HHHHHHH--cCCCEEEEEECccCccchhhH-------------HHHHHcCCCCeEE
Confidence 4 8999999988 567777654 4444544 379999999999987543110 1122222237899
Q ss_pred cccCCCCCHHHHHHHHHHHHhc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+||++|.|+++|++++.+.+.+
T Consensus 144 iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 144 ISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp CBTTTTBTHHHHHHHHHHTGGG
T ss_pred EeCcCCCChHHHHHHHHHhcCc
Confidence 9999999999999999998864
No 57
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.8e-19 Score=161.74 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=113.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||...... ....++
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 85 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT--------LTPSYY 85 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------SHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------hhHHHh
Confidence 346899999999999999999998765433333333444444444444 5789999999754322 123334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.. +|++++|+|++. +.+..+...|+..+.... .+.|+++|+||+|+.... .. ......+....+.
T Consensus 86 ~~-~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~---------~~~~~~~~~~~~~ 152 (195)
T 1x3s_A 86 RG-AQGVILVYDVTR--RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VD---------RNEGLKFARKHSM 152 (195)
T ss_dssp TT-CCEEEEEEETTC--HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SC---------HHHHHHHHHHTTC
T ss_pred cc-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cC---------HHHHHHHHHHcCC
Confidence 44 489999999984 345566666777777643 468999999999995432 10 0112223333346
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
+++++||++|.|+++++++|.+.+.....
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 153 LFIEASAKTCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHhhhh
Confidence 89999999999999999999998876543
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.82 E-value=8.9e-20 Score=162.80 Aligned_cols=164 Identities=15% Similarity=0.137 Sum_probs=108.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---CceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---YQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+.++ ...+.+|||||..... .....+
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~ 78 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ--------SLGVAF 78 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC------------------CC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh--------hhhHHH
Confidence 45789999999999999999999876544444444556666666655 2578999999964321 122222
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK 387 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (435)
+. .+|++++|+|+++ +.+.++...|+..+.... .+.|+++|+||+|+........ ......+..
T Consensus 79 ~~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~--------~~~~~~~~~ 147 (182)
T 1ky3_A 79 YR-GADCCVLVYDVTN--ASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVS--------EKSAQELAK 147 (182)
T ss_dssp ST-TCCEEEEEEETTC--HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSC--------HHHHHHHHH
T ss_pred hh-cCCEEEEEEECCC--hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCC--------HHHHHHHHH
Confidence 33 3589999999984 345566666777776543 4689999999999964321100 111222222
Q ss_pred -cCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 388 -MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 388 -~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
....+++++||++|.|+++++++|.+.+.+.
T Consensus 148 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 148 SLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp HTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred hcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999987654
No 59
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.82 E-value=9.7e-20 Score=176.09 Aligned_cols=161 Identities=18% Similarity=0.232 Sum_probs=118.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-c
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-H 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~ 315 (435)
..+|+++|.+|||||||+|++++....++++||+|.+...+.+.. +..+.+|||||+....... .-+.....++. .
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS--PEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS--HHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC--hHHHHHHHHHhcC
Confidence 468999999999999999999998888899999999988887766 7889999999987653221 11333444444 2
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
.+|++++|+|+++ .+....|...+.+. +.|+++|+||+|+........ + ...+. ...+.++++
T Consensus 80 ~~d~vi~V~D~t~-----~e~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~~~~---~----~~~l~---~~lg~~vi~ 142 (272)
T 3b1v_A 80 RADSILNVVDATN-----LERNLYLTTQLIET--GIPVTIALNMIDVLDGQGKKI---N----VDKLS---YHLGVPVVA 142 (272)
T ss_dssp CCSEEEEEEEGGG-----HHHHHHHHHHHHHT--CSCEEEEEECHHHHHHTTCCC---C----HHHHH---HHHTSCEEE
T ss_pred CCCEEEEEecCCc-----hHhHHHHHHHHHhc--CCCEEEEEEChhhCCcCCcHH---H----HHHHH---HHcCCCEEE
Confidence 4699999999883 23344466667664 799999999999865332211 1 11111 111358999
Q ss_pred cccCCCCCHHHHHHHHHHHHhc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+||++|.|++++++++.+.+..
T Consensus 143 ~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 143 TSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CBTTTTBSHHHHHHHHHHSCTT
T ss_pred EEccCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999887643
No 60
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.82 E-value=1.8e-19 Score=163.10 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=111.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHH-HHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLE-KLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie-~~~~~~ 312 (435)
+..+|+++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||..+ +. .....+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER--------FRKSMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHH--------HHTTTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchh--------hhhhhhHHH
Confidence 446899999999999999999997766444444445555555666665 5789999999632 11 123333
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+.. +|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+....... ......+....+
T Consensus 91 ~~~-~d~iilv~D~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~ 158 (189)
T 1z06_A 91 YRN-VHAVVFVYDMTN--MASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP---------TDLAQKFADTHS 158 (189)
T ss_dssp HTT-CCEEEEEEETTC--HHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC---------HHHHHHHHHHTT
T ss_pred hcC-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC---------HHHHHHHHHHcC
Confidence 444 589999999984 345566666888877763 578999999999996543211 011222333334
Q ss_pred CcEEEcccCCC---CCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNE---EGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g---~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++| .||++++++|.+.+.+
T Consensus 159 ~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 159 MPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp CCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred CEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 68999999999 9999999999887643
No 61
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=1.7e-19 Score=158.94 Aligned_cols=160 Identities=23% Similarity=0.190 Sum_probs=107.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+.....+..+.+.....+.++ +..+.+|||||..+.. .....++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------~~~~~~~~ 77 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH--------SLAPMYYR 77 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG--------GGHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh--------hhhHHhcc
Confidence 4689999999999999999999765532222222222222333333 4578999999975422 12233343
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++ +.+.++...|+..+.... .+.|+++|+||+|+....... ......+....+.++
T Consensus 78 ~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~ 145 (170)
T 1r2q_A 78 G-AQAAIVVYDITN--EESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD---------FQEAQSYADDNSLLF 145 (170)
T ss_dssp T-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTCEE
T ss_pred C-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC---------HHHHHHHHHHcCCeE
Confidence 3 489999999984 345566666777777653 568999999999996543211 111222333345689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|+++++++|.+.+.
T Consensus 146 ~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 146 METSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHHTSC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988653
No 62
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=2.7e-19 Score=161.24 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=112.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|.+|+|||||++++++.. ...+. .|.+.....+.+++..+.+|||||..+. ......++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~- 83 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKSL--------RSYWRNYF- 83 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETTEEEEEEEECCSHHH--------HTTGGGGC-
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECCEEEEEEECCCCHhH--------HHHHHHHh-
Confidence 356789999999999999999999776 22222 2444555667778899999999998421 11112222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh--hhhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS--YRKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 390 (435)
..+|++++|+|+++ +.+.++...|+..+... ..+.|+++|+||+|+.+.... ........ ......
T Consensus 84 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~ 153 (186)
T 1ksh_A 84 ESTDGLIWVVDSAD--RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--------NAIQEALELDSIRSHH 153 (186)
T ss_dssp TTCSEEEEEEETTC--GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------HHHHHHTTGGGCCSSC
T ss_pred cCCCEEEEEEECcC--HHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCH--------HHHHHHhChhhccCCc
Confidence 33589999999984 45566666677666553 257899999999999765311 01111111 111234
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+++++||++|.|++++++++.+.+.+.
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 154 WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 5799999999999999999999988654
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.82 E-value=7.5e-20 Score=162.86 Aligned_cols=161 Identities=22% Similarity=0.163 Sum_probs=113.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||...... ....++.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~ 85 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR 85 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------GSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH--------HHHHHhc
Confidence 46899999999999999999997776555556666666666676766 4789999999754321 1222333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++ ..+......|+..+.... .+.|+++|+||+|+.+...... .....+....+.++
T Consensus 86 ~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 153 (179)
T 2y8e_A 86 D-STVAVVVYDITN--TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVST---------EEGERKAKELNVMF 153 (179)
T ss_dssp T-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCH---------HHHHHHHHHHTCEE
T ss_pred C-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCH---------HHHHHHHHHcCCeE
Confidence 3 489999999984 345556666777776543 4689999999999975432210 11111122223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.|+++++++|.+.+..
T Consensus 154 ~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 154 IETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp EEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999887643
No 64
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.2e-19 Score=167.27 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=115.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||.... ......++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~--------~~~~~~~~ 96 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF--------RSITQSYY 96 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHGGGS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH--------HHHHHHHH
Confidence 346899999999999999999998766544445555566666666666 47899999997431 12222333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .+|++++|+|++. ..+++....|+..+.... .+.|+++|+||+|+.+...... .....+....+.+
T Consensus 97 ~-~~d~~i~v~D~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~---------~~~~~~~~~~~~~ 164 (201)
T 2ew1_A 97 R-SANALILTYDITC--EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQ---------QRAEEFSEAQDMY 164 (201)
T ss_dssp T-TCSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCH---------HHHHHHHHHHTCC
T ss_pred h-cCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---------HHHHHHHHHcCCE
Confidence 3 3589999999984 345666667888877654 4689999999999975432210 1111222222468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.||+++++++.+.+...
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 165 YLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999887653
No 65
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=1.4e-19 Score=164.58 Aligned_cols=165 Identities=19% Similarity=0.129 Sum_probs=113.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+. ..+..|+.......+..++. .+.+|||||...... ....++
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 92 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP-TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR--------LRPLSY 92 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT--------TGGGGC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH--------HhHhhc
Confidence 4578999999999999999999987653 33444554444445555554 459999999754321 111222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..+|++++|+|+++ ..+..+. ..|+..+.....+.|+++|+||+|+......... ......+....+.+
T Consensus 93 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-------~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 93 -ADSDVVLLCFAVNN--RTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVT-------KQEGDDLCQKLGCV 162 (194)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCC-------HHHHHHHHHHHTCS
T ss_pred -cCCcEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCccc-------HHHHHHHHHhcCCC
Confidence 23589999999984 3455554 4578888777678999999999999864211110 11122222222334
Q ss_pred -EEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 393 -AIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 393 -~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
++++||++|.||+++++++.+.+....
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 163 AYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999886654
No 66
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.81 E-value=3.5e-19 Score=162.89 Aligned_cols=162 Identities=16% Similarity=0.121 Sum_probs=111.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+.....+..+.+.....+..+ ...+.+|||||.... ......++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--------~~~~~~~~~ 79 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY--------RTITTAYYR 79 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG--------HHHHHTTGG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh--------cchHHHhhc
Confidence 4689999999999999999999877543333333333333344444 357899999998432 122333344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
. +|++++|+|+++ +.+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.++
T Consensus 80 ~-~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 147 (203)
T 1zbd_A 80 G-AMGFILMYDITN--EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS---------ERGRQLADHLGFEF 147 (203)
T ss_dssp G-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCH---------HHHHHHHHHHTCEE
T ss_pred C-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCH---------HHHHHHHHHCCCeE
Confidence 4 489999999984 345666667888887654 4789999999999976432210 11112222223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|+++++++|.+.+.+.
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 148 FEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp EECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999877543
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=3.8e-19 Score=156.40 Aligned_cols=160 Identities=15% Similarity=0.135 Sum_probs=108.5
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
.+|+++|++|+|||||++++.+..+. ... .|.+.....+..++..+.+|||||.... ......++.. +
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~~~~~~~-~ 68 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKI--------RPLWRHYFQN-T 68 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCC--CCSSCCEEEEECSSCEEEEEECCCCGGG--------HHHHHHHTTT-C
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-ccc--CcCceeEEEEEECCEEEEEEEcCCChhh--------HHHHHHHhcc-C
Confidence 36999999999999999999876543 222 2445556667778889999999998532 2223333444 5
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEE
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIR 395 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (435)
|++++|+|+++ ..+......|+..+... ..+.|+++|+||+|+...... .+.. .. ...........++++
T Consensus 69 d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~-~~-~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 69 QGLIFVVDSND--RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA----AEIT-DK-LGLHSLRHRNWYIQA 140 (164)
T ss_dssp SEEEEEEETTC--GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HHHH-HH-TTGGGCSSCCEEEEE
T ss_pred CEEEEEEECCC--HHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCH----HHHH-HH-hCcccccCccEEEEE
Confidence 99999999984 34566666666666542 247899999999999764311 0100 00 001111223347999
Q ss_pred cccCCCCCHHHHHHHHHHHHhc
Q 037423 396 VSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 396 vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+||++|.|++++++++.+.+..
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC--
T ss_pred cccCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999987643
No 68
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.81 E-value=4.4e-19 Score=156.86 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=111.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+|+++|.+|+|||||++++.+..+. .. ..|.+.....+.+++..+.+|||||...... ....++ .
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~-~ 73 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGLTSIRP--------YWRCYY-S 73 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTEEEEEEEECCCGGGGG--------GGGGGC-T
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCEEEEEEECCCChhhhH--------HHHHHh-c
Confidence 4678999999999999999999876542 11 2244555666777889999999999854321 111222 3
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHH-HhhhhcCCCc
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM-ASYRKMGPDG 392 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 392 (435)
.+|++++|+|+++ ..+......++..+... ..+.|+++|+||+|+.+.... .+. .... .........+
T Consensus 74 ~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~---~~~~~~~~~~~~~~~ 144 (171)
T 1upt_A 74 NTDAVIYVVDSCD--RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS----SEM---ANSLGLPALKDRKWQ 144 (171)
T ss_dssp TCSEEEEEEETTC--CTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HHH---HHHHTGGGCTTSCEE
T ss_pred cCCEEEEEEECCC--HHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH----HHH---HHHhCchhccCCceE
Confidence 3589999999984 45566666666666543 247899999999999765311 011 0111 1112223457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|++++++++.+.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECcCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999998764
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.81 E-value=3.8e-19 Score=159.58 Aligned_cols=164 Identities=17% Similarity=0.097 Sum_probs=112.5
Q ss_pred cCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCce--EEEEeCCCCCCCCchhhhHHHHHHH
Q 037423 233 VDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN--FQITDTPGLLQRRDEDRNNLEKLTL 310 (435)
Q Consensus 233 ~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~ie~~~~ 310 (435)
.+.+..+|+++|.+|+|||||++++++..+.. .+..++..........++.. +.+|||||...... ...
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~ 84 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA--------MRE 84 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS--------SHH
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH--------HHH
Confidence 34456789999999999999999999765433 33344444445556666644 56699999754322 122
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.++.. +|++++|+|+++ +.+++....|+..+... ..+.|+++|+||+|+.+...... .....+...
T Consensus 85 ~~~~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~---------~~~~~~~~~ 152 (183)
T 3kkq_A 85 QYMRT-GDGFLIVYSVTD--KASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTR---------DQGKEMATK 152 (183)
T ss_dssp HHHHH-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCH---------HHHHHHHHH
T ss_pred HHHhc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCH---------HHHHHHHHH
Confidence 23334 489999999984 34566666677777653 24689999999999976442211 112222222
Q ss_pred CCCcEEEcccC-CCCCHHHHHHHHHHHHhc
Q 037423 389 GPDGAIRVSVM-NEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 389 ~~~~~i~vSA~-~g~GI~eL~~~i~~~l~~ 417 (435)
.+.+++++||+ +|.|+++++++|.+.+.+
T Consensus 153 ~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 153 YNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 24689999999 999999999999988754
No 70
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.81 E-value=1.6e-19 Score=163.83 Aligned_cols=163 Identities=15% Similarity=0.084 Sum_probs=112.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+..++ ..+.+|||||....... ...++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 91 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI--------TRSYY 91 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC--------CHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh--------HHHHh
Confidence 346899999999999999999998766444444445555555566655 47899999997543221 22333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. ++++++|+|+++ ..+.++...|+..+.... .+.|+++|+||+|+........ .....+....+.+
T Consensus 92 ~~-~d~ii~v~d~~~--~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~~ 159 (191)
T 2a5j_A 92 RG-AAGALLVYDITR--RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKR---------EEGEAFAREHGLI 159 (191)
T ss_dssp TT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCE
T ss_pred cc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCH---------HHHHHHHHHcCCE
Confidence 33 589999999984 345666667888877653 4789999999999975432110 1112222222458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.||++++++|.+.+.+.
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEIYRK 185 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999887543
No 71
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.81 E-value=2.6e-19 Score=162.09 Aligned_cols=162 Identities=17% Similarity=0.103 Sum_probs=110.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+.....+..+.+.....+..+ ...+.+|||||....... ...++.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 93 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI--------TTAYYR 93 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS--------GGGGGT
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh--------HHHhcc
Confidence 4689999999999999999999876543333333333333334443 357899999997654321 112233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+|++++|+|+++ +.+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.++
T Consensus 94 -~~d~ii~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~~ 161 (189)
T 2gf9_A 94 -GAMGFLLMYDIAN--QESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPA---------EDGRRLADDLGFEF 161 (189)
T ss_dssp -TCSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCEE
T ss_pred -CCCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCH---------HHHHHHHHHcCCeE
Confidence 3589999999984 345666667888877753 4789999999999975432110 11122222224589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|+++++++|.+.+.+.
T Consensus 162 ~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 162 FEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987543
No 72
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=164.66 Aligned_cols=173 Identities=17% Similarity=0.098 Sum_probs=111.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
....+|+++|.+|+|||||++++++..+ ...+++|+.+.....+..++. .+.+|||||..+.... ...+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~ 88 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL--------RPLC 88 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS--------GGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH--------hHhh
Confidence 4567899999999999999999998764 345566766666666666664 5679999998654321 1112
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch---hhhHHHHHHHhhhhc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTE---DEDSEHLEMASYRKM 388 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~ 388 (435)
+ ..+|++++|+|+++ ..+..+.. .|+..+.....+.|+++|+||+|+........... ...........+...
T Consensus 89 ~-~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 165 (201)
T 2q3h_A 89 Y-TNTDIFLLCFSVVS--PSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE 165 (201)
T ss_dssp G-TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred c-CCCcEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh
Confidence 3 33589999999984 34556654 58888887767899999999999975311000000 000000111222222
Q ss_pred -CCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 389 -GPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 389 -~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
...+++++||++|.||+++++++.+.+....
T Consensus 166 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 166 IKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 2237999999999999999999999876543
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=166.07 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=109.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||..... .....++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~ 95 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFR--------SVTRSYY 95 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHS--------CCCHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHH--------HHHHHHh
Confidence 457899999999999999999998776544455555566566666666 678999999963221 1122334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|+++ +.+.++...|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 96 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~~ 163 (200)
T 2o52_A 96 RG-AAGALLVYDITS--RETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVT---------FLEASRFAQENELM 163 (200)
T ss_dssp TT-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTCE
T ss_pred cc-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccC---------HHHHHHHHHHcCCE
Confidence 43 589999999984 345666667777776643 478999999999996533211 01122233334568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.|+++++++|.+.+...
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 74
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=161.74 Aligned_cols=163 Identities=20% Similarity=0.167 Sum_probs=110.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC--CceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG--YQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~--~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+....+.....+..+ +..+.+|||||..+... ....++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 95 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA--------ITSAYY 95 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------THHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------hhHHHh
Confidence 34689999999999999999999876543222222233333333333 35789999999865432 122334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. ++++++|+|++. ..+......|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 96 ~~-~d~vi~v~D~~~--~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~ 163 (193)
T 2oil_A 96 RG-AVGALLVFDLTK--HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP---------TEEARMFAENNGLL 163 (193)
T ss_dssp TT-CCEEEEEEETTC--HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTCE
T ss_pred cc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC---------HHHHHHHHHHcCCE
Confidence 44 489999999984 345555566777776643 468999999999997543211 01122233333468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.|+++++++|.+.+.+.
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEIFAK 189 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999877543
No 75
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.81 E-value=1.4e-19 Score=165.74 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=113.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||....... ...++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 78 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL--------GVAFY 78 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS--------CCGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh--------HHHHH
Confidence 456899999999999999999998776544445555666666666655 57899999997543221 11223
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK- 387 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 387 (435)
. .+|++++|+|++. +.+..+...|+..+.... .+.|+++|+||+|+...... . .....+..
T Consensus 79 ~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~---~~~~~~~~~ 145 (207)
T 1vg8_A 79 R-GADCCVLVFDVTA--PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVA-------T---KRAQAWCYS 145 (207)
T ss_dssp T-TCSEEEEEEETTC--HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSC-------H---HHHHHHHHH
T ss_pred h-CCcEEEEEEECCC--HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccC-------H---HHHHHHHHh
Confidence 3 3589999999984 345566666777776543 36899999999999743211 0 11222222
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
....+++++||++|.|+++++++|.+.+...
T Consensus 146 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 146 KNNIPYFETSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp TTSCCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999887543
No 76
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.8e-19 Score=163.85 Aligned_cols=162 Identities=20% Similarity=0.158 Sum_probs=111.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|+|||||++++++..+ ...+..+++.......+......+.+|||||..+... ....++
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~ 93 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS--------LAPMYY 93 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG--------GTHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh--------hhHHhh
Confidence 457899999999999999999997764 2334444444333333333446789999999754321 122334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. ++++++|+|++. ..+.+....|+..+.... .+.|+++|+||+|+.+..... ......+....+.+
T Consensus 94 ~~-~d~iilV~d~~~--~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~---------~~~~~~~~~~~~~~ 161 (192)
T 2fg5_A 94 RG-SAAAVIVYDITK--QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP---------LKDAKEYAESIGAI 161 (192)
T ss_dssp TT-CSEEEEEEETTC--THHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHTTTCE
T ss_pred cc-CCEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC---------HHHHHHHHHHcCCE
Confidence 44 489999999984 455666677888887754 368999999999996533211 11223333344568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|+++++++|.+.+.+
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 162 VVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp EEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987643
No 77
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=162.67 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=111.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|.+|+|||||++++++.......+ ..|.+.....+.+++..+.+|||||....... ...++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~~ 89 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL--------WEHYYK 89 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-CCCSSEEEEEEECSSCEEEEEEECCSTTTGGG--------GGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-CCccceeEEEEEECCEEEEEEECCCCHHHHHH--------HHHHHh
Confidence 356789999999999999999999776322223 34556667777888899999999997654221 122333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh--c
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK--M 388 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~ 388 (435)
. +|++++|+|+++ ..+..+...++..+.... .+.|+++|+||+|+...... ........... .
T Consensus 90 ~-~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~ 158 (190)
T 2h57_A 90 E-GQAIIFVIDSSD--RLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTS--------VKVSQLLCLENIKD 158 (190)
T ss_dssp G-CSEEEEEEETTC--HHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCH--------HHHHHHHTGGGCCS
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCH--------HHHHHHhChhhccC
Confidence 3 489999999984 344556555666666542 37899999999999764311 11111111111 1
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+.+++++||++|.|+++++++|.+.+.+.
T Consensus 159 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 159 KPWHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 245799999999999999999999987543
No 78
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=3.5e-19 Score=161.38 Aligned_cols=164 Identities=17% Similarity=0.131 Sum_probs=110.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|.+|+|||||++++++..+..... .|.+.....+..++..+.+|||||..+ +......++.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~~~~~~~ 89 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--PTVGFNMRKITKGNVTIKLWDIGGQPR--------FRSMWERYCR 89 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEETTEEEEEEEECCSHH--------HHTTHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--CCCceeEEEEEeCCEEEEEEECCCCHh--------HHHHHHHHHc
Confidence 345789999999999999999999776542222 233344445667788999999999742 1222333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. +|++++|+|+++ ..+.+....|+..+... ..+.|+++|+||+|+...... .+.... . ..........+
T Consensus 90 ~-~d~ii~v~D~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~-~-~~~~~~~~~~~ 160 (188)
T 1zd9_A 90 G-VSAIVYMVDAAD--QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE----KELIEK-M-NLSAIQDREIC 160 (188)
T ss_dssp T-CSEEEEEEETTC--GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH----HHHHHH-T-TGGGCCSSCEE
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH----HHHHHH-h-ChhhhccCCee
Confidence 4 589999999984 34566666667666543 257899999999999764311 010000 0 00111123457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|+++++++|.+.+..
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999987654
No 79
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.81 E-value=1.8e-19 Score=166.75 Aligned_cols=163 Identities=13% Similarity=0.113 Sum_probs=110.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC------------CceEEEEeCCCCCCCCchhhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG------------YQNFQITDTPGLLQRRDEDRN 303 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~------------~~~~~liDTpG~~~~~~~~~~ 303 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+.++ ...+.+|||||..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~-------- 95 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE-------- 95 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH--------
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH--------
Confidence 34689999999999999999999876643333333333434444443 4578999999953
Q ss_pred HHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHH
Q 037423 304 NLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLE 381 (435)
Q Consensus 304 ~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~ 381 (435)
.+......++.. +|++++|+|+++ ..+.++...|+..+.... .+.|+++|+||+|+....... ...
T Consensus 96 ~~~~~~~~~~~~-~d~iilV~D~~~--~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~---------~~~ 163 (217)
T 2f7s_A 96 RFRSLTTAFFRD-AMGFLLMFDLTS--QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN---------ERQ 163 (217)
T ss_dssp HHHHHHHHHHTT-CCEEEEEEETTC--HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC---------HHH
T ss_pred hHHhHHHHHhcC-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC---------HHH
Confidence 223334444544 489999999984 345555555666555432 478999999999997543211 112
Q ss_pred HHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 382 MASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 382 ~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
...+....+.+++++||++|.||++++++|.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 164 ARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp HHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 2233333356899999999999999999999987654
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.81 E-value=8.6e-19 Score=153.36 Aligned_cols=158 Identities=18% Similarity=0.100 Sum_probs=108.6
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
.+|+++|.+|+|||||++++++..+. ..+..++.+.....+..++ ..+.+|||||..+... ....++..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------~~~~~~~~ 74 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------MRDQYMRT 74 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH--------HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH--------HHHHhhcc
Confidence 57999999999999999999876543 2334444444444555554 4578999999865321 22223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS--DHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~--~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+++++|+|+++ ..+..+...|+..+..... +.|+++|+||+|+...... . .....+....+.++
T Consensus 75 -~~~~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~-------~---~~~~~~~~~~~~~~ 141 (166)
T 2ce2_X 75 -GEGFLCVFAINN--TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVE-------S---RQAQDLARSYGIPY 141 (166)
T ss_dssp -CSEEEEEEETTC--HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC-------H---HHHHHHHHHHTCCE
T ss_pred -CCEEEEEEECCC--HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccC-------H---HHHHHHHHHcCCeE
Confidence 488999999984 3455566667777776543 6899999999999763211 0 11112222224589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.|++++++++.+.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 142 IETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 81
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=2.7e-19 Score=157.97 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=105.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+|+++|.+|+|||||++++++..+.....+ +...........++ ..+.+|||||..+.. .....++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~ 73 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP-TVEDTYRQVISCDKSICTLQITDTTGSHQFP--------AMQRLSIS 73 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCC-CSCEEEEEEEEETTEEEEEEEEECCSCSSCH--------HHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CccccEEEEEEECCEEEEEEEEECCCchhhH--------HHHHHhcc
Confidence 46899999999999999999998765322222 22122222233333 468999999986532 12233344
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
. +|++++|+|+++ ..+.++...|+..+.+.. .+.|+++|+||+|+........ .....+....+.
T Consensus 74 ~-~~~~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~---------~~~~~~~~~~~~ 141 (172)
T 2erx_A 74 K-GHAFILVYSITS--RQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQS---------SEAEALARTWKC 141 (172)
T ss_dssp H-CSEEEEEEETTC--HHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHHTC
T ss_pred c-CCEEEEEEECcC--HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCH---------HHHHHHHHHhCC
Confidence 4 489999999984 334555555666666542 4689999999999975432211 011112222235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++++||++|.|+++++++|.+.+....
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 169 (172)
T 2erx_A 142 AFMETSAKLNHNVKELFQELLNLEKRRT 169 (172)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTCCSSC
T ss_pred eEEEecCCCCcCHHHHHHHHHHHHhhhh
Confidence 8999999999999999999998776543
No 82
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.81 E-value=5.1e-19 Score=159.60 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=108.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
....+|+++|++|+|||||++++.+..+. .+ ..|.+.....+.+++..+.+|||||.... ......++.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 82 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS--HI-TPTQGFNIKSVQSQGFKLNVWDIGGQRKI--------RPYWRSYFE 82 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE--EE-EEETTEEEEEEEETTEEEEEEECSSCGGG--------HHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC--cc-cCcCCeEEEEEEECCEEEEEEECCCCHHH--------HHHHHHHhC
Confidence 45689999999999999999999977542 11 12333444566677889999999997532 122333444
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh--hhhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS--YRKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 390 (435)
. +|++++|+|+++ ..+......++..+... ..+.|+++|+||+|+...... ++ ...... ......
T Consensus 83 ~-~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~----~~~~~~~~~~~~~~ 151 (181)
T 1fzq_A 83 N-TDILIYVIDSAD--RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA----SE----IAEGLNLHTIRDRV 151 (181)
T ss_dssp T-CSEEEEEEETTC--GGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH----HH----HHHHTTGGGCCSSC
T ss_pred C-CCEEEEEEECcC--HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH----HH----HHHHhCchhccCCc
Confidence 4 599999999984 34566655566655432 247899999999999765321 01 111111 111223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|.|++++++++.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 152 WQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred eEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 579999999999999999999987644
No 83
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.9e-19 Score=167.82 Aligned_cols=165 Identities=18% Similarity=0.146 Sum_probs=111.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|++|+|||||++++++..+.....+..+.+.....+.+++ ..+.+|||||....... ...++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 83 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI--------TSAYY 83 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC--------CGGGT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh--------HHHHh
Confidence 346899999999999999999998776544445555555556666666 57899999997654321 11222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..++++++|+|++. +.++++...|+..+.... .+.|+++|+||+|+....... ......+....+.+
T Consensus 84 -~~~d~vilV~D~~~--~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~---------~~~~~~~~~~~~~~ 151 (223)
T 3cpj_B 84 -RGAVGALIVYDISK--SSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP---------TEESKTFAQENQLL 151 (223)
T ss_dssp -TTCCEEEEEEC-CC--HHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC---------HHHHHHHHHHTTCE
T ss_pred -ccCCEEEEEEeCCC--HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC---------HHHHHHHHHHcCCE
Confidence 33589999999984 456667667888887653 368999999999997543211 01122233334568
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++++||++|.||++++++|.+.+.....
T Consensus 152 ~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 152 FTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp EEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998865543
No 84
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.80 E-value=4.2e-19 Score=171.12 Aligned_cols=165 Identities=23% Similarity=0.272 Sum_probs=122.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh-c
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT-H 315 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~-~ 315 (435)
.++|+++|++|+|||||+|++++....+++.+++|.+...+.+.+++..+.+|||||+.+....... +.....++. .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID--ELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH--HHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH--HHHHHHhhhcc
Confidence 4689999999999999999999988888899999999999999999999999999999765432211 223333332 4
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC-CcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEE
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD-HIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAI 394 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~-~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (435)
.+|++++|+|++. ......+...+.+. + .|+++|+||+|+......... ...+. ...+.+++
T Consensus 81 ~~d~vi~v~D~~~-----~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-------~~~l~---~~lg~~~~ 143 (271)
T 3k53_A 81 NADVIVDIVDSTC-----LMRNLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-------IKKMR---KELGVPVI 143 (271)
T ss_dssp CCSEEEEEEEGGG-----HHHHHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-------HHHHH---HHHSSCEE
T ss_pred CCcEEEEEecCCc-----chhhHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-------HHHHH---HHcCCcEE
Confidence 4699999999883 23333455666664 5 999999999998643322111 11111 11246899
Q ss_pred EcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 395 RVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 395 ~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++||++|.|++++++.+.+.+.....
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~ 169 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVT 169 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcccc
Confidence 99999999999999999998876543
No 85
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=162.55 Aligned_cols=169 Identities=14% Similarity=0.028 Sum_probs=105.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
....+|+++|.+|+|||||++++++..+.....+....+.....+.+++ ..+.+|||||..... .....+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~ 97 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR--------SIAKSY 97 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH--------HHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh--------hhHHHH
Confidence 3467899999999999999999997765322222222333334444544 568999999975431 223334
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
+.. +|++++|+|+++ +.+.++...|+..+.... .+.|+++|+||+|+........ ..... ......+....+.
T Consensus 98 ~~~-~d~iilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~-~~~v~--~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 98 FRK-ADGVLLLYDVTC--EKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEG-QKCVP--GHFGEKLAMTYGA 171 (199)
T ss_dssp HHH-CSEEEEEEETTC--HHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTT-CCCCC--HHHHHHHHHHHTC
T ss_pred Hhh-CCEEEEEEECCC--hHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccccccc-ccccC--HHHHHHHHHHcCC
Confidence 444 489999999984 455666667777777653 3689999999999963110000 00000 0111122222245
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++++||++|.||++++++|.+.+.+
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999988753
No 86
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.80 E-value=4e-19 Score=158.76 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=107.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|||||||++++++..+.. +..|+.+.....+..++ ..+.+|||||... ..++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------------~~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-------------AKFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-------------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch-------------hHHH
Confidence 45689999999999999999999876642 33344444445555555 4578999999864 1123
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-c
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK-M 388 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~ 388 (435)
.+ +|++++|+|+++ ..++++...|+..+.... .+.|+++|+||+|+.......... .....+.. .
T Consensus 71 ~~-~d~~ilv~D~~~--~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~-------~~~~~~~~~~ 140 (178)
T 2iwr_A 71 GW-ADAVIFVFSLED--ENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGD-------ARARALXADM 140 (178)
T ss_dssp HH-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCH-------HHHHHHHHHH
T ss_pred Hh-CCEEEEEEECcC--HHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCH-------HHHHHHHHhh
Confidence 33 489999999984 345666666555554431 468999999999995321111000 11112222 1
Q ss_pred CCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 389 GPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 389 ~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.+.+++++||++|.|++++++++.+.+...
T Consensus 141 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 141 KRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp SSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 245899999999999999999999887654
No 87
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.80 E-value=2.2e-19 Score=162.75 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=111.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.+..+|+++|.+|||||||++++++..+..... .| .+.....+.+++ ..+.+|||||..... +
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~-~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~ 82 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEES-PE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-------------F 82 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC-TT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-------------H
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC-CC-cceEEEEEEECCEEEEEEEEECCCChhhh-------------e
Confidence 455789999999999999999998776543222 22 333445566666 456789999985421 2
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC-
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG- 389 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (435)
+.. ++++++|+|+++ ..++++...|+..+.... .+.|+++|+||+|+........ .......+....
T Consensus 83 ~~~-~~~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 83 AAW-VDAVVFVFSLED--EISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVI-------DDSRARKLSTDLK 152 (184)
T ss_dssp HHH-CSEEEEEEETTC--HHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS-------CHHHHHHHHHHTT
T ss_pred ecC-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccccc-------CHHHHHHHHHHcC
Confidence 333 489999999994 456777667888887753 3689999999999963221111 011122233322
Q ss_pred CCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 390 PDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 390 ~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
..+++++||++|.||+++++++.+.+....
T Consensus 153 ~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 153 RCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999876543
No 88
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=1.5e-19 Score=164.05 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=111.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+..+.+.....+.. .+..+.+|||||... +......++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~~ 93 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER--------YRTITTAYY 93 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH--------CHHHHHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH--------HHHHHHHHH
Confidence 4578999999999999999999976543222222222333333333 456799999999532 223334444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
.. +|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.+
T Consensus 94 ~~-~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~---------~~~~~~~~~~~~~ 161 (191)
T 3dz8_A 94 RG-AMGFILMYDITN--EESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT---------EKGQLLAEQLGFD 161 (191)
T ss_dssp TT-CCEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTCE
T ss_pred cc-CCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH---------HHHHHHHHHcCCe
Confidence 44 489999999984 345666667888887754 4789999999999965432211 1112222222458
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.||+++++++.+.+.+.
T Consensus 162 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 162 FFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 89
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.80 E-value=2e-19 Score=187.01 Aligned_cols=161 Identities=26% Similarity=0.368 Sum_probs=118.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCC-CCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLL-QRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~-~~~~~~~~~ie~~~~~~l 313 (435)
.+.+|+++|.||+|||||+|++++.+ ..++++++||++.....+.+++..+.+|||||+. +.........-..+...+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 35789999999999999999999875 4689999999999999999999999999999997 443211110011233344
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.. +|++++|+|+++ +.+.++.. +++.+ .++|+++|+||+|+..... . ..+..+.. ...++
T Consensus 322 ~~-aD~vl~VvD~s~--~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~----~-------~~~~~~~~-~~~~~ 381 (482)
T 1xzp_A 322 EK-ADIVLFVLDASS--PLDEEDRK-ILERI----KNKRYLVVINKVDVVEKIN----E-------EEIKNKLG-TDRHM 381 (482)
T ss_dssp HH-CSEEEEEEETTS--CCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCC----H-------HHHHHHHT-CSTTE
T ss_pred hc-ccEEEEEecCCC--CCCHHHHH-HHHHh----cCCCEEEEEECcccccccC----H-------HHHHHHhc-CCCcE
Confidence 44 499999999984 45665543 44333 3789999999999975311 0 11112222 22579
Q ss_pred EEcccCCCCCHHHHHHHHHHHHh
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++||++|.|+++++++|.+.+.
T Consensus 382 i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 382 VKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999765
No 90
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.80 E-value=8.5e-20 Score=163.74 Aligned_cols=171 Identities=16% Similarity=0.102 Sum_probs=112.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++.+..+. ..+..|+.+.....+..++ ..+.+|||||....... ...++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 74 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL--------RPLSY 74 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT--------GGGGC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH--------HHHhc
Confidence 3468999999999999999999876553 3344455554444555555 45679999998543211 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 389 (435)
..+|++++|+|+++ +.+.++.. .|+..+....++.|+++|+||+|+...........+ ..........+....
T Consensus 75 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 75 -PQTDVSLICFSLVS--PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred -cCCcEEEEEEECCC--hhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 33589999999984 34555554 577888876668999999999999764211000000 000011222233333
Q ss_pred CC-cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 390 PD-GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 390 ~~-~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+. +++++||++|.|++++++++.+.+...
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 33 899999999999999999999988654
No 91
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.80 E-value=1.7e-19 Score=187.23 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=95.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHH-H-
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA-V- 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~-~- 312 (435)
.+.+|+++|++|+|||||+|+|++.. ..++++++||++.....+.+++..+.+|||||+.+.. ..++.+... .
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~----~~ve~~gi~~~~ 307 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAG----EEIEHEGIRRSR 307 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcch----hHHHHHHHHHHH
Confidence 35679999999999999999999875 4788999999999999999999999999999996532 222332211 1
Q ss_pred -HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 313 -LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 313 -l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
....+|++++|+|++. +.+.++...+...+.. ..++|+++|+||+|+...... ....+... ...
T Consensus 308 ~~~~~aD~vl~VvD~s~--~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~---------~~~~l~~~---~~~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGT--ERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADA---------LIRAIADG---TGT 372 (476)
T ss_dssp CCCSSCSEEEEEEETTT--CSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHH---------HHHHHHHH---HTS
T ss_pred hhcccCCEEEEEEECCC--CcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccch---------hHHHHHhc---CCC
Confidence 1233699999999984 4555432222222222 247899999999999865421 00111111 124
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++++||++|.|+++++++|.+.+.
T Consensus 373 ~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999999987
No 92
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.80 E-value=6.8e-19 Score=159.08 Aligned_cols=161 Identities=19% Similarity=0.125 Sum_probs=108.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|+|||||++++++..+. ..+.+|+.+.....+..++ ..+.+|||||..+.. .....++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 90 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMRDQYM 90 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-------------------C
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc-cccCCccceEEEEEEEECCEEEEEEEEECCChHHHH--------HHHHHhh
Confidence 3468999999999999999999976543 3444555555555566655 458899999975422 1222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
..++++++|+|+++ ..+..+...|+..+.... .+.|+++|+||+|+...... . .....+....+.
T Consensus 91 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-------~---~~~~~~~~~~~~ 157 (190)
T 3con_A 91 -RTGEGFLCVFAINN--SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVD-------T---KQAHELAKSYGI 157 (190)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSC-------H---HHHHHHHHHHTC
T ss_pred -CcCCEEEEEEECcC--HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCC-------H---HHHHHHHHHcCC
Confidence 34589999999984 345566666777776653 36899999999999763211 0 111122222235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|.|+++++++|.+.+...
T Consensus 158 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 158 PFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999988654
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.80 E-value=2.7e-19 Score=160.93 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=107.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|.+|+|||||++++++..+. .+ ..|.+.....+.+++..+.+|||||..+.... ...++.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 87 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV--HT-SPTIGSNVEEIVINNTRFLMWDIGGQESLRSS--------WNTYYT 87 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE--EE-ECCSSSSCEEEEETTEEEEEEEESSSGGGTCG--------GGGGGT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCcCceeeEEEEECCEEEEEEECCCCHhHHHH--------HHHHhc
Confidence 45678999999999999999999987661 11 12233334556678899999999998543221 122233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh--hhhcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS--YRKMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 390 (435)
.+|++++|+|+++ ..+.+....++..+... ..+.|+++|+||+|+...... ........ ......
T Consensus 88 -~~d~ii~v~D~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--------~~i~~~~~~~~~~~~~ 156 (181)
T 2h17_A 88 -NTEFVIVVVDSTD--RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--------AEISQFLKLTSIKDHQ 156 (181)
T ss_dssp -TCCEEEEEEETTC--TTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--------HHHHHHTTGGGCCSSC
T ss_pred -cCCEEEEEEECCC--HHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH--------HHHHHHhCcccccCCc
Confidence 3589999999984 45677776677776653 257999999999999764211 01111111 111223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHH
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.+++++||++|.|+++++++|.+.
T Consensus 157 ~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 157 WHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHTC
T ss_pred eEEEEccCCCCcCHHHHHHHHHhh
Confidence 479999999999999999998753
No 94
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=164.07 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=104.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+. ..+.+|+.+.....+..++. .+.+|||||..+.. .....++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------~~~~~~~ 103 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD--------RLRPLFY 103 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh--------HHHHHHh
Confidence 4568999999999999999999977653 23444554444445555553 68999999975432 1222233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 389 (435)
. .++++++|+|+++ ..+++... .|+..+.....+.|+++|+||+|+............ ..........+....
T Consensus 104 ~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 180 (214)
T 2j1l_A 104 P-DASVLLLCFDVTS--PNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV 180 (214)
T ss_dssp --CEEEEEEEEETTC--HHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred c-cCCEEEEEEECcC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc
Confidence 3 3489999999984 34555554 578888776678999999999999764311000000 000011222333333
Q ss_pred CC-cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 390 PD-GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 390 ~~-~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+. +++++||++|.||++++++|.+.+.+..
T Consensus 181 ~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 181 GAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 33 8999999999999999999999886554
No 95
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.80 E-value=2.6e-19 Score=165.07 Aligned_cols=174 Identities=14% Similarity=0.076 Sum_probs=114.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++.+..+. ..+.+|+.+.....+.+++ ..+.+|||||....... ...++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 78 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP-TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRL--------RPLSY 78 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------CGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHhhc
Confidence 4578999999999999999999977653 3445555555555555555 47899999998654321 11223
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC-C
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP-D 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 391 (435)
. .+|++++|+|+++ ..++++.. .|+..+....++.|+++|+||+|+.............. .......+....+ .
T Consensus 79 ~-~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~ 154 (212)
T 2j0v_A 79 R-GADIFVLAFSLIS--KASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVI-TSTQGEELRKQIGAA 154 (212)
T ss_dssp T-TCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCC-CHHHHHHHHHHHTCS
T ss_pred c-CCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCC-CHHHHHHHHHHcCCc
Confidence 3 3589999999984 34555654 58888887766899999999999875421100000000 0111122222222 4
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDRI 422 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~ 422 (435)
+++++||++|.|++++++++.+.+.....+.
T Consensus 155 ~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 155 AYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHCC----
T ss_pred eEEEccCCCCCCHHHHHHHHHHHHhhhhhhc
Confidence 8999999999999999999999887665443
No 96
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.80 E-value=1.2e-19 Score=180.78 Aligned_cols=170 Identities=26% Similarity=0.351 Sum_probs=122.9
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
+.|+++|.+|+|||||+|++++.++.++++++||.+...+.+.+++ ..+++|||||+.+........... ....+..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~-fl~~i~~- 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQ-FLRHIER- 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHH-HHHHHHH-
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHH-HHHHHHh-
Confidence 5799999999999999999999888889999999999988888876 889999999975432221111111 1222223
Q ss_pred CcEEEEEEeCCCCC-CCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 317 PTAILFVHDLSGEC-GTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 317 ~d~il~ViD~s~~~-g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
++++++|+|+++.. ..+.++...|..++.... .++|+++|+||+|+.... .....+...... ..+
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----------e~~~~l~~~l~~-~~~ 305 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----------ENLEAFKEKLTD-DYP 305 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----------HHHHHHHHHCCS-CCC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----------HHHHHHHHHhhc-CCC
Confidence 48999999998521 234566666788887753 478999999999987432 011112221111 147
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
++++||++++|+++|+++|.+.+.....
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 8999999999999999999999976543
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.79 E-value=1.8e-18 Score=157.57 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=109.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|++|+|||||++++.+..+. .. ..|.+.....+.+++..+.+|||||..+... ....++.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~~~~~~ 95 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIRP--------LWRHYFQ 95 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----CT--------THHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHHH--------HHHHHhc
Confidence 45789999999999999999999877653 11 2355566666777889999999999864322 1223334
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. +|++++|+|+++ +.+......++..+... ..+.|+++|+||+|+...... .+... . ...........+
T Consensus 96 ~-~d~iilv~D~~~--~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~i~~-~-~~~~~~~~~~~~ 166 (192)
T 2b6h_A 96 N-TQGLIFVVDSND--RERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPV----SELTD-K-LGLQHLRSRTWY 166 (192)
T ss_dssp T-CCEEEEEEETTC--GGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH----HHHHH-H-TTGGGCSSCCEE
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCH----HHHHH-H-hCcccccCCceE
Confidence 4 489999999984 44566666667666542 247899999999999764311 01000 0 001111223357
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHh
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
++++||++|.|+++++++|.+.+.
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHTT
T ss_pred EEECcCCCcCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 98
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.79 E-value=5.7e-19 Score=160.13 Aligned_cols=159 Identities=16% Similarity=0.069 Sum_probs=109.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|||||||++++++..+. ..+..|+.+.....+..++ ..+.+|||||...... + ..++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----~----~~~~ 89 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-----C----ERYL 89 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-----T----HHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-----H----HHHH
Confidence 4568999999999999999999977643 3445555544444444544 4678999999865321 1 1233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (435)
.. ++++++|+|+++ ..+++....|+..+.... .+.|+++|+||+|+........ .....+....
T Consensus 90 ~~-~~~~ilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~ 157 (187)
T 3c5c_A 90 NW-AHAFLVVYSVDS--RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTK---------AEGVALAGRF 157 (187)
T ss_dssp TT-CSEEEEEEETTC--HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCH---------HHHHHHHHHH
T ss_pred hh-CCEEEEEEECCC--HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCH---------HHHHHHHHHc
Confidence 33 589999999984 345666667888777653 5799999999999965432210 1112222222
Q ss_pred CCcEEEccc-CCCCCHHHHHHHHHHHHh
Q 037423 390 PDGAIRVSV-MNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 390 ~~~~i~vSA-~~g~GI~eL~~~i~~~l~ 416 (435)
+.+++++|| ++|.||+++++.|.+.+.
T Consensus 158 ~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 158 GCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp TCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 458999999 899999999999998774
No 99
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=1.3e-19 Score=166.74 Aligned_cols=169 Identities=17% Similarity=0.132 Sum_probs=111.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCce--EEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN--FQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.+..+|+++|.+|+|||||++++++..+. ..+.+|+.+.....+..++.. +.+|||||....... ...+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 98 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL--------RPLS 98 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC-C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT--------GGGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC-CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH--------HHHH
Confidence 45689999999999999999999876553 345556666666666666654 459999998543211 1122
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhh---hHHHHHHHhhhhc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDE---DSEHLEMASYRKM 388 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~ 388 (435)
+ ..+|++++|+|+++ +.+.++.. .|+..+.....+.|+++|+||+|+...........+. .........+...
T Consensus 99 ~-~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 4gzl_A 99 Y-PQTDVFLICFSLVS--PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
T ss_dssp C-TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred h-ccCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence 2 33599999999984 45566654 5788888776789999999999997653211000000 0001122223322
Q ss_pred -CCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 389 -GPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 389 -~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
...+++++||++|.||+++++++.+.+
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 176 IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 234699999999999999999998753
No 100
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=9.1e-19 Score=158.97 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=112.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+. ..+.+|+.+.....+.+++ ..+.+|||||..+.... ...++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~~~ 87 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL--------RPLSY 87 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT--------GGGGC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH--------HHHhc
Confidence 3468999999999999999999977543 3455565555555566655 56889999998654321 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch---hhhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTE---DEDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 389 (435)
..+|++++|+|+++ ..++.... .|+..+....++.|+++|+||+|+........... ...........+....
T Consensus 88 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 88 -PMTDVFLICFSVVN--PASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred -CCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 33589999999984 34455554 57888887767899999999999976421000000 0000011122222222
Q ss_pred C-CcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 390 P-DGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 390 ~-~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+ .+++++||++|.||++++++|.+.+.
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2 37999999999999999999998764
No 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=3.6e-19 Score=159.57 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=108.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|++|+|||||++++++..+. .+ ..|.+.....+.+++..+.+|||||....... ...++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~- 83 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV--TT-KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPY--------WRCYY- 83 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE--EE-CSSTTCCEEEEEETTEEEEEEEEC----CCTT--------GGGTT-
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC--cc-CCcCccceEEEEECCEEEEEEECCCCHhHHHH--------HHHHh-
Confidence 35789999999999999999999976551 11 12333445566777889999999998654321 11122
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh--hcCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR--KMGP 390 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 390 (435)
..+|++++|+|+++ +.+.++...++..+... ..+.|+++|+||+|+.+.... .......... ....
T Consensus 84 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~i~~~~~~~~~~~~~ 153 (183)
T 1moz_A 84 ADTAAVIFVVDSTD--KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSA--------SEVSKELNLVELKDRS 153 (183)
T ss_dssp TTEEEEEEEEETTC--TTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCH--------HHHHHHTTTTTCCSSC
T ss_pred ccCCEEEEEEECCC--HHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCH--------HHHHHHhCcccccCCc
Confidence 23489999999984 45677766677766653 257899999999999764311 0111111111 1123
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|.|++++++++.+.+.+
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 154 WSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 478999999999999999999998764
No 102
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.79 E-value=7.5e-19 Score=159.88 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|++|+|||||++++.+..+. .+ ..|.+.....+.+++..+.+|||||....... ...++.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~~ 89 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARRL--------WKDYFP 89 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTTS--------GGGGCT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHHH--------HHHHHh
Confidence 35679999999999999999999976642 22 23444556677888899999999998653221 112223
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh-------
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY------- 385 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~------- 385 (435)
.+|++++|+|+++ +.+++....++..+... ..+.|+++|+||+|+...... + ........
T Consensus 90 -~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~----~~~~~~~~~~~~~~~ 158 (190)
T 1m2o_B 90 -EVNGIVFLVDAAD--PERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSE----A----ELRSALGLLNTTGSQ 158 (190)
T ss_dssp -TCCEEEEEEETTC--GGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH----H----HHHHHTTCSSCCC--
T ss_pred -cCCEEEEEEECCC--hHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCH----H----HHHHHhCCccccccc
Confidence 3589999999984 45666666677776542 257899999999999763210 0 11111110
Q ss_pred --hhcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 386 --RKMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 386 --~~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
......+++++||++|.|++++++++.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 159 RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp -CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 11234579999999999999999998753
No 103
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.79 E-value=5.1e-19 Score=162.15 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=104.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|++|+|||||++++.+..+. .+. .|.+.....+.+++..+.+|||||....... ...++.
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~~-~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 91 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG--QHV-PTLHPTSEELTIAGMTFTTFDLGGHIQARRV--------WKNYLP 91 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CCG--------GGGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC--ccC-CCCCceeEEEEECCEEEEEEECCCcHhhHHH--------HHHHHh
Confidence 35678999999999999999999877642 122 2334445677788899999999998653321 112233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh------
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR------ 386 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------ 386 (435)
. ++++++|+|+++ ..++.+...|+..+... ..+.|+++|+||+|+..... .+ .........
T Consensus 92 ~-~d~~i~v~D~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~----~~~~~~~~~~~~~~~ 160 (198)
T 1f6b_A 92 A-INGIVFLVDCAD--HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS----EE----RLREMFGLYGQTTGK 160 (198)
T ss_dssp G-CSEEEEEEETTC--GGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC----HH----HHHHHHTCTTTCCCS
T ss_pred c-CCEEEEEEECCC--HHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC----HH----HHHHHhCcccccccc
Confidence 3 489999999984 44566666677776643 24789999999999975221 01 111111100
Q ss_pred --------hcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 387 --------KMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 387 --------~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.....+++++||++|+|++++++++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 161 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp SCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 01235799999999999999999997643
No 104
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=1.1e-18 Score=158.96 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=109.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|+|||||++++++..+.. .+..|+.......+..++ ..+.+|||||... . .....++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~--------~~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIW-EYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T--------IQREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C--------HHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c--------cchhhhh
Confidence 56789999999999999999999776532 233333333333444544 5689999999876 1 1223334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.. ++++++|+|+++. .+.++...|+..+.... .+.|+++|+||+|+........ .....+....+.
T Consensus 97 ~~-~d~iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~---------~~~~~~~~~~~~ 164 (196)
T 2atv_A 97 RW-GEGFVLVYDITDR--GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVST---------EEGEKLATELAC 164 (196)
T ss_dssp HH-CSEEEEEEETTCH--HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCH---------HHHHHHHHHHTS
T ss_pred cc-CCEEEEEEECcCH--HHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCH---------HHHHHHHHHhCC
Confidence 44 3899999999843 45566666777776542 4789999999999976432210 111122222245
Q ss_pred cEEEcccCCCC-CHHHHHHHHHHHHhc
Q 037423 392 GAIRVSVMNEE-GLNELKDRVYQMLVG 417 (435)
Q Consensus 392 ~~i~vSA~~g~-GI~eL~~~i~~~l~~ 417 (435)
+++++||++|. |+++++++|.+.+.+
T Consensus 165 ~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 165 AFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp EEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred eEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 89999999999 999999999998754
No 105
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=163.72 Aligned_cols=165 Identities=16% Similarity=0.108 Sum_probs=110.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe--CCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL--GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~--~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
+..+|+++|.+|+|||||++++++..+. ..+..|+.......+.. ....+.+|||||..+.... ...++
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 93 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL--------PYSFI 93 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC--------CGGGT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH--------HHHHH
Confidence 4678999999999999999999987664 23334444333444443 3467799999997654322 11222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
. .+|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+........ .....+....+.
T Consensus 94 ~-~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~---------~~~~~~~~~~~~ 161 (201)
T 3oes_A 94 I-GVHGYVLVYSVTS--LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQA---------VEGKKLAESWGA 161 (201)
T ss_dssp T-TCCEEEEEEETTC--HHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCH---------HHHHHHHHHHTC
T ss_pred h-cCCEEEEEEeCCC--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCH---------HHHHHHHHHhCC
Confidence 2 3589999999984 345666667777776542 3689999999999975442211 111222222245
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhccccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
+++++||++|.|+++++++|.+.+......
T Consensus 162 ~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 162 TFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999988765443
No 106
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.79 E-value=6.3e-20 Score=170.58 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=117.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC--CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK--PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~--~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||+++++... ....+..++|.......+...+..+.+|||||....... ...++
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 85 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL--------RDGYY 85 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC--------CHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH--------HHHHH
Confidence 45789999999999999999966443 244566677776665555545578899999997543221 22233
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.. ++++++|+|++. +.+.++...|+..+.....+.|+++|+||+|+.+..... +. ..+....+.++
T Consensus 86 ~~-~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~-------~~~~~~~~~~~ 151 (221)
T 3gj0_A 86 IQ-AQCAIIMFDVTS--RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KS-------IVFHRKKNLQY 151 (221)
T ss_dssp TT-CCEEEEEEETTC--HHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG----GG-------CCHHHHHTCEE
T ss_pred hc-CCEEEEEEECCC--HHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH----HH-------HHHHHHcCCEE
Confidence 33 589999999984 456677777888888877789999999999997654211 11 01111223589
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++||++|.|+++++++|.+.+....
T Consensus 152 ~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 152 YDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp EECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999886554
No 107
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.79 E-value=3.1e-19 Score=163.17 Aligned_cols=161 Identities=16% Similarity=0.106 Sum_probs=81.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC--CCccccCCcee-eeeeEEEEEeCC----ceEEEEeCCCCCCCCchhhhHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG--KPEVCNYPFTT-RGILMGHINLGY----QNFQITDTPGLLQRRDEDRNNLEKL 308 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~--~~~v~~~~~tT-~~~~~~~~~~~~----~~~~liDTpG~~~~~~~~~~~ie~~ 308 (435)
...+|+++|.+|+|||||++++++. .+ ...+.+|+ .+.....+.+++ ..+.+|||||... ....
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------~~~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKF-LKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL--------YKEQ 89 (208)
T ss_dssp EEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH--------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcc-cCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHH--------HHHH
Confidence 3468999999999999999999977 33 23444444 356666667664 4789999999842 1222
Q ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC----CCcEEEEEeccCCCC-CCCccccchhhhHHHHHHH
Q 037423 309 TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS----DHIWLDVVSKCDLLQ-TSPVAYVTEDEDSEHLEMA 383 (435)
Q Consensus 309 ~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~----~~piIvV~NK~Dl~~-~~~~~~~~~~~~~~~~~~~ 383 (435)
...++ ..+|++++|+|+++ +.+.+....|+..+..... +.|+++|+||+|+.. ..... .....
T Consensus 90 ~~~~~-~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~---------~~~~~ 157 (208)
T 2yc2_C 90 ISQYW-NGVYYAILVFDVSS--MESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR---------LDMAQ 157 (208)
T ss_dssp HSTTC-CCCCEEEEEEETTC--HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC---------HHHHH
T ss_pred HHHHH-hhCcEEEEEEECCC--HHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC---------HHHHH
Confidence 22223 33589999999984 4456676778888887643 789999999999976 33211 11122
Q ss_pred hhhhcCCCcEEEcccCC-CCCHHHHHHHHHHHHhc
Q 037423 384 SYRKMGPDGAIRVSVMN-EEGLNELKDRVYQMLVG 417 (435)
Q Consensus 384 ~~~~~~~~~~i~vSA~~-g~GI~eL~~~i~~~l~~ 417 (435)
.+....+.+++++||++ |.|+++++++|.+.+..
T Consensus 158 ~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 158 DWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp HHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred HHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 23333346899999999 99999999999997654
No 108
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=3.5e-19 Score=184.32 Aligned_cols=164 Identities=20% Similarity=0.266 Sum_probs=107.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...++|+++|++|||||||+|+|++.+. .+.+.+++|++.....+.+.+..+.+|||||+..........+..++..++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3468999999999999999999998765 578899999999988888888999999999987443333445555666666
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
... |++++|+|++ .+.+..+.. +...+.. .++|+++|+||+|+..... ...++...+...+
T Consensus 101 ~~a-d~il~VvD~~--~~~~~~d~~-l~~~l~~--~~~pvilV~NK~D~~~~~~-------------~~~e~~~lg~~~~ 161 (456)
T 4dcu_A 101 DEA-DVIIFMVNGR--EGVTAADEE-VAKILYR--TKKPVVLAVNKLDNTEMRA-------------NIYDFYSLGFGEP 161 (456)
T ss_dssp HHC-SEEEEEEESS--SCSCHHHHH-HHHHHTT--CCSCEEEEEECC----------------------CCSGGGSSSSE
T ss_pred hhC-CEEEEEEeCC--CCCChHHHH-HHHHHHH--cCCCEEEEEECccchhhhh-------------hHHHHHHcCCCce
Confidence 664 8999999987 567777654 5555554 4799999999999875321 1112222333467
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+++||++|.|+++|++.+.+.+..
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred EEeecccccchHHHHHHHHhhccc
Confidence 899999999999999999887754
No 109
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.78 E-value=2.2e-20 Score=170.93 Aligned_cols=162 Identities=20% Similarity=0.129 Sum_probs=110.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+.++.+.....+.+++ ..+.+|||||........ ..++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------~~~~ 103 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT--------SSYY 103 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS--------CC--
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH--------HHHh
Confidence 357899999999999999999998876555556667777777777776 568999999976543211 1122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
. .+|++++|+|+++ ..+.+....|+..+.... .+.|+++|+||+|+......... + ...+....+.+
T Consensus 104 ~-~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~--~-------~~~~~~~~~~~ 171 (199)
T 3l0i_B 104 R-GAHGIIVVYDVTD--QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT--T-------AKEFADSLGIP 171 (199)
T ss_dssp C-CCSEEEECC-CCC--SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC--C--------CHHHHTTTCC
T ss_pred h-cCCEEEEEEECCC--HHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH--H-------HHHHHHHcCCe
Confidence 3 3589999999984 456667677888776653 36899999999999765432210 0 11222233468
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.||++++++|.+.+..
T Consensus 172 ~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 172 FLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp BCCCCC---HHHHHHHHHHTTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999887654
No 110
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.78 E-value=1.5e-18 Score=156.84 Aligned_cols=164 Identities=19% Similarity=0.172 Sum_probs=112.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..+|+++|++|+|||||++++.+..+. ...| |.+.....+.+++..+.+|||||..+...... .++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~--------~~~- 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWR--------CYF- 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCS--------SSS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHH--------HHh-
Confidence 35678999999999999999999876653 2222 34455566777888999999999865432211 112
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (435)
..+|++++|+|+++ +.+......++..+... ..+.|+++|+||+|+....... +... .. ..........+
T Consensus 88 ~~~d~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~-~~-~~~~~~~~~~~ 159 (189)
T 2x77_A 88 SDTDAVIYVVDSTD--RDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEA----EIAE-QL-GVSSIMNRTWT 159 (189)
T ss_dssp TTCCEEEEEEETTC--CTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHH----HHHH-HT-TGGGCCSSCEE
T ss_pred hcCCEEEEEEeCCC--HHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHH----HHHH-Hh-ChhhccCCceE
Confidence 23589999999984 45666666666666543 2478999999999997653110 1000 00 01111222347
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.|++++++++.+.+.+.
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 160 IVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EEEccCCCccCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988654
No 111
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=2.3e-19 Score=160.56 Aligned_cols=169 Identities=15% Similarity=0.079 Sum_probs=101.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|++|+|||||++++.+..+. ..+.+|+.+.....+..++ ..+.+|||||..+.... ...++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 77 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP-TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL--------RPLSY 77 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC-----------CBCCCC-------CEEECCCC-CTTTTT--------GGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh--------HHhhc
Confidence 5678999999999999999999976643 3344444333322222333 45679999998654321 11223
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch-hhhHHHHHHHhhhhcCC-
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTE-DEDSEHLEMASYRKMGP- 390 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 390 (435)
. .+|++++|+|+++ ..+.++.. .|+..+.....+.|+++|+||+|+........... ...........+....+
T Consensus 78 ~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 78 R-GADVFILAFSLIS--KASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp T-TCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred c-CCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 3 3589999999984 34555554 57888887666899999999999875431100000 00000111122222223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.+++++||++|.|++++++++.+.+.
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 38999999999999999999998764
No 112
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.78 E-value=9.2e-19 Score=162.53 Aligned_cols=175 Identities=14% Similarity=0.071 Sum_probs=111.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
....+|+++|.+|||||||++++++..+. ..+..|+.+.....+..++ ..+.+|||||....... ...+
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~ 95 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV--------RPLC 95 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT--------GGGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH--------HHHH
Confidence 35678999999999999999999987654 2333344333333344433 57899999998543211 1122
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHH-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc---hhhhHHHHHHHhhhhc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSD-QFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT---EDEDSEHLEMASYRKM 388 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~-~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~~ 388 (435)
+. .+|++++|+|+++ ..++.+ ...|+..+.....+.|+++|+||+|+.......... ............+...
T Consensus 96 ~~-~~d~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 172 (214)
T 3q3j_B 96 YS-DSDAVLLCFDISR--PETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ 172 (214)
T ss_dssp CT-TCSEEEEEEETTC--THHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred cC-CCeEEEEEEECcC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH
Confidence 33 3589999999984 456666 467888888877789999999999997531000000 0000001112223333
Q ss_pred CCC-cEEEcccCCCCC-HHHHHHHHHHHHhccccc
Q 037423 389 GPD-GAIRVSVMNEEG-LNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 389 ~~~-~~i~vSA~~g~G-I~eL~~~i~~~l~~~~~~ 421 (435)
.+. +++++||++|.| |+++++++.+.+......
T Consensus 173 ~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 173 LGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp HTCSEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred cCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 244 899999999998 999999999988765443
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.78 E-value=1.4e-18 Score=159.18 Aligned_cols=169 Identities=18% Similarity=0.114 Sum_probs=109.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++.+..+.....+ |+.......+..++ ..+.+|||||..+.... ...++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 94 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP-TVFENYIADIEVDGKQVELALWDTAGQEDYDRL--------RPLSY 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCC-SSCCCCEEEEEETTEEEEEEEECCCCSGGGTTT--------GGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCC-cccceEEEEEEECCEEEEEEEEECCCchhHHHH--------HHHhc
Confidence 456899999999999999999997765433233 33332333455555 47899999997543211 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 389 (435)
..+|++++|+|+++ ..+.++. ..|+..+.....+.|+++|+||+|+...........+ ..........+....
T Consensus 95 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 95 -PDTDVILMCFSIDS--PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred -CCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 33589999999984 3445555 4577777776668999999999999865211000000 000011222233322
Q ss_pred CC-cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 390 PD-GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 390 ~~-~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+. +++++||++|.||++++++|.+.+.
T Consensus 172 ~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 172 SAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 33 7999999999999999999998764
No 114
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.1e-18 Score=158.72 Aligned_cols=170 Identities=17% Similarity=0.091 Sum_probs=108.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.. .+.+|+.+.....+..++ ..+.+|||||..+.... ...++
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~~~ 94 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPE-VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL--------RPLSY 94 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT--------GGGGC
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCC-cCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH--------HHhhc
Confidence 34689999999999999999999776542 233444443334455555 46899999998654321 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 389 (435)
..+|++++|+|+++ ..+.... ..|+..+....++.|+++|+||+|+...........+ ..........+....
T Consensus 95 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 95 -PDTDVILMCFSVDS--PDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp -TTCCEEEEEEETTC--HHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred -CCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 33589999999984 3344554 4577777776668999999999999754211000000 000011122222222
Q ss_pred CC-cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 390 PD-GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 390 ~~-~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+. +++++||++|.|+++++++|.+.+..
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 33 79999999999999999999998754
No 115
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.5e-18 Score=157.58 Aligned_cols=165 Identities=22% Similarity=0.180 Sum_probs=107.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.....+ |........+..++ ..+.+|||||..+.. .....++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------~~~~~~~ 77 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIP-TIEDTYRQVISCDKSVCTLQITDTTGSHQFP--------AMQRLSI 77 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSC-CCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------HHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccC-ccccceeEEEEECCEEEEEEEEeCCChHHhH--------HHHHHhh
Confidence 467899999999999999999997665322222 22222222233333 468999999975432 1222333
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh---cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKER---FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~---~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.. +|++++|+|+++. .+.+....|+..+... ..+.|+++|+||+|+...... . .....+....+
T Consensus 78 ~~-~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~----~------~~~~~~~~~~~ 144 (199)
T 2gf0_A 78 SK-GHAFILVFSVTSK--QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVD----T------REAQAVAQEWK 144 (199)
T ss_dssp HH-CSEEEEEEETTCH--HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSC----H------HHHHHHHHHHT
T ss_pred cc-CCEEEEEEECcCH--HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccC----H------HHHHHHHHHhC
Confidence 44 4899999999843 3444444455555543 236899999999999753211 0 11111222223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhcccccc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVGQMDRI 422 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~ 422 (435)
.+++++||++|.|+++++++|.+.+.....++
T Consensus 145 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 176 (199)
T 2gf0_A 145 CAFMETSAKMNYNVKELFQELLTLETRRNMSL 176 (199)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHCSSSCEEC
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHhhhhccc
Confidence 58999999999999999999999887665443
No 116
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.78 E-value=1.2e-18 Score=157.62 Aligned_cols=162 Identities=15% Similarity=0.085 Sum_probs=102.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccC--------CceeeeeeEEE-----EEeCCceEEEEeCCCCCCCCchhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNY--------PFTTRGILMGH-----INLGYQNFQITDTPGLLQRRDEDR 302 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~--------~~tT~~~~~~~-----~~~~~~~~~liDTpG~~~~~~~~~ 302 (435)
...+|+++|.+|+|||||++.+.+........ ...|....... +......+.+|||||......
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--- 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA--- 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH---
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH---
Confidence 35689999999999999998776543221100 11222221111 111235689999999865431
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHH------HHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhh
Q 037423 303 NNLEKLTLAVLTHLPTAILFVHDLSGECGTSPS------DQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDED 376 (435)
Q Consensus 303 ~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~------~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~ 376 (435)
....++.. +|++++|+|++. +.+.+ ....|+..+.....+.|+++|+||+|+.....
T Consensus 90 -----~~~~~~~~-~d~~i~v~D~~~--~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~--------- 152 (198)
T 3t1o_A 90 -----SRKLILRG-VDGIVFVADSAP--NRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP--------- 152 (198)
T ss_dssp -----HHHHHTTT-CCEEEEEEECCG--GGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC---------
T ss_pred -----HHHHHHhc-CCEEEEEEECCc--chhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC---------
Confidence 22233444 589999999982 22222 22233333322235789999999999976421
Q ss_pred HHHHHHHhhhhcCCC-cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 377 SEHLEMASYRKMGPD-GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~-~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
......+....+. +++++||++|.|+++++++|.+.+.+..
T Consensus 153 --~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 153 --VEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp --HHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 1223334444455 8999999999999999999999876543
No 117
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=3.1e-18 Score=159.32 Aligned_cols=163 Identities=14% Similarity=0.082 Sum_probs=109.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|.+|||||||++++.+... .+..++.++.+.....+.+++. .+++|||+|.... +......
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~--------~~~l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE--------NEWLHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH--------HHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch--------hhhHHHH
Confidence 347899999999999999999986543 3344555555655566666664 4678999996420 1112222
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+...++++++|+|++++ .+++....|...+... ..+.|+++|+||+|+........ .....+....+
T Consensus 108 ~~~~a~~~ilVydvt~~--~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~---------~e~~~~a~~~~ 176 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDR--ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSV---------SEGRACAVVFD 176 (211)
T ss_dssp CCCCCSEEEEEEETTCH--HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCH---------HHHHHHHHHHT
T ss_pred HHhhCCEEEEEEECCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeH---------HHHHHHHHHcC
Confidence 33446899999999843 4556665677766643 24789999999999975332210 01111222223
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|.||+++|+++.+.+..
T Consensus 177 ~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 177 CKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999998743
No 118
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=1.2e-18 Score=170.88 Aligned_cols=165 Identities=21% Similarity=0.241 Sum_probs=115.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH----H
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT----L 310 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~----~ 310 (435)
+...|+++|++|+|||||+|++++... .+++.++||++...+.+..++..+.++||||+... ....+.... .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~---~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHME---EKRAINRLMNKAAS 83 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHH---HHHHHHHHHTCCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCcc---chhhHHHHHHHHHH
Confidence 345799999999999999999998875 46778889998888888888889999999998611 111111111 1
Q ss_pred HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 311 AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 311 ~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.++ ...|++++|+|++. ++..+.. +...+.. .+.|+++|+||+|+..... .. ...+..+....+
T Consensus 84 ~~l-~~~D~vl~Vvd~~~---~~~~~~~-i~~~l~~--~~~P~ilvlNK~D~~~~~~------~~---~~~l~~l~~~~~ 147 (301)
T 1ega_A 84 SSI-GDVELVIFVVEGTR---WTPDDEM-VLNKLRE--GKAPVILAVNKVDNVQEKA------DL---LPHLQFLASQMN 147 (301)
T ss_dssp SCC-CCEEEEEEEEETTC---CCHHHHH-HHHHHHS--SSSCEEEEEESTTTCCCHH------HH---HHHHHHHHTTSC
T ss_pred HHH-hcCCEEEEEEeCCC---CCHHHHH-HHHHHHh--cCCCEEEEEECcccCccHH------HH---HHHHHHHHHhcC
Confidence 111 22488999999873 5666553 4444543 3789999999999875210 11 112223333222
Q ss_pred -CcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 391 -DGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 391 -~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.+++++||++|.|++++++.+.+.+....
T Consensus 148 ~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 148 FLDIVPISAETGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp CSEEEECCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHhCCcCC
Confidence 36899999999999999999998876544
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.76 E-value=4.7e-18 Score=152.99 Aligned_cols=162 Identities=20% Similarity=0.225 Sum_probs=104.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchh---hhHHHHHHHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDED---RNNLEKLTLAVLT 314 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~---~~~ie~~~~~~l~ 314 (435)
++|+++|.+|+|||||++++++..+..+..|++|.+.....+ + .+.+|||||+....... .+.+......++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEec--C--CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988877778888776654433 2 78999999975432211 2233333333333
Q ss_pred ---cCCcEEEEEEeCCCCCCCCHHHH-HHH------------HHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHH
Q 037423 315 ---HLPTAILFVHDLSGECGTSPSDQ-FTI------------YKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 315 ---~~~d~il~ViD~s~~~g~s~~~~-~~l------------~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
+..+++++|+|.+ +..+. ..| ...+.. .+.|+++|+||+|+.... .+ .
T Consensus 78 ~~~~~~~~v~~v~d~~-----s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~------~~---~ 141 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGK-----AAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV------QE---V 141 (190)
T ss_dssp HHGGGCCEEEEEEETT-----HHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH------HH---H
T ss_pred hhhccCCEEEEEEcch-----hhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH------HH---H
Confidence 2346777788765 22222 122 222333 378999999999997642 00 1
Q ss_pred HHHHHhhhhcC----CCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 379 HLEMASYRKMG----PDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 379 ~~~~~~~~~~~----~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
...+....... ..+++++||++|.|++++++++.+.+....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 11111111110 125799999999999999999999886543
No 120
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=1.6e-17 Score=166.88 Aligned_cols=173 Identities=19% Similarity=0.202 Sum_probs=107.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH--HHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL--TLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~--~~~~l~ 314 (435)
.+.|+++|++|+|||||+|++++..+.+.+++++|.+...+.+.+++..+.++||||+....... .++.+ +...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~--lve~f~~tl~~~~ 256 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQ--IVDAFFVTLSEAK 256 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGG--GHHHHHHHHHGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHH--HHHHHHHHHHHHH
Confidence 34599999999999999999999888888899999999999999999999999999986542221 22222 223333
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHH-HhhhhcCCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM-ASYRKMGPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 392 (435)
.+|++++|+|+++...........+...+.... .+.|+++|+||+|+.+.. . .........+ ..+ .....+
T Consensus 257 -~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~----~~~~~~~~~l~~~l-~~~~~~ 329 (364)
T 2qtf_A 257 -YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-L----YKKLDLVEKLSKEL-YSPIFD 329 (364)
T ss_dssp -GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-H----HHHHHHHHHHHHHH-CSCEEE
T ss_pred -hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-H----HHHHHHHHHHHHHh-cCCCCc
Confidence 358999999998431001222223344444432 468999999999997543 0 0100010001 111 011236
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
++++||++|.|++++++.|.+.+...
T Consensus 330 ~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 330 VIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHhccc
Confidence 79999999999999999999987654
No 121
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.76 E-value=1.4e-17 Score=157.07 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=110.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCC--ceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYP--FTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~--~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++|+++|++|+|||||+|++++.....+..+ ++|.+.....+.+++..+.+|||||+.+.........+.+.....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999877666665 678888888888899999999999998654332222222222211
Q ss_pred --hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 314 --THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 314 --~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
...++++++|+|++. .+..+.. ++..+.+.+ ..+|+++|+||+|+................... +...
T Consensus 108 ~~~~~~~~~l~v~d~~~---~~~~~~~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~---l~~~ 180 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGR---YTEEEHK-ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQD---LMDI 180 (239)
T ss_dssp HTTTCCSEEEEEEETTC---CSSHHHH-HHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHH---HHHH
T ss_pred hcCCCCcEEEEEeeCCC---CCHHHHH-HHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHH---HHHH
Confidence 233589999999873 2333332 444444322 246999999999998654332222211112222 2222
Q ss_pred CCCcEEEcccCCC-----CCHHHHHHHHHHHHhcccccccCCC
Q 037423 389 GPDGAIRVSVMNE-----EGLNELKDRVYQMLVGQMDRIKSRS 426 (435)
Q Consensus 389 ~~~~~i~vSA~~g-----~GI~eL~~~i~~~l~~~~~~~~t~~ 426 (435)
.+..++.+++..+ .|+.+|++.+.+.+.+......+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~ 223 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYTNR 223 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC---
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCcHH
Confidence 2346777776644 7999999999999877555444443
No 122
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.75 E-value=5.7e-18 Score=161.26 Aligned_cols=181 Identities=18% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCC--ceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYP--FTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~--~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
....+|+++|.+|+|||||+|++++........+ ++|.......+.+++..+.||||||+.+......+.+......+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 3457899999999999999999998876544433 48888888888889999999999999764432201111112222
Q ss_pred H---hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc----CCCcEEEEEeccCCCCCCCccccchhhhHH--HHHHH
Q 037423 313 L---THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF----SDHIWLDVVSKCDLLQTSPVAYVTEDEDSE--HLEMA 383 (435)
Q Consensus 313 l---~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~----~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~--~~~~~ 383 (435)
+ ...+|++++|+|++. ++..+.. +++.+.+.+ .+.|+|+|.||+|+.... ..+.... ...+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~~-~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-----~~~~l~~~~~~~l~ 169 (247)
T 3lxw_A 99 YLLSAPGPHALLLVTQLGR---FTAQDQQ-AVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-----LHDYVSNTENRALR 169 (247)
T ss_dssp HHHHTTCCSEEEEEEETTB---CCHHHHH-HHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----HHHHHHHCCCHHHH
T ss_pred HHhcCCCCCEEEEEEeCCC---CCHHHHH-HHHHHHHHhChhhhccEEEEEEchHhcCCCC-----HHHHHhhcccHHHH
Confidence 2 245699999999872 4555543 455555543 257999999999997543 1111111 01122
Q ss_pred hhhhcCCCcEEEcccCC-----CCCHHHHHHHHHHHHhcccccccC
Q 037423 384 SYRKMGPDGAIRVSVMN-----EEGLNELKDRVYQMLVGQMDRIKS 424 (435)
Q Consensus 384 ~~~~~~~~~~i~vSA~~-----g~GI~eL~~~i~~~l~~~~~~~~t 424 (435)
.+....+..++.+++.. +.|+++|++.|.+++.+......+
T Consensus 170 ~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~ 215 (247)
T 3lxw_A 170 ELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYS 215 (247)
T ss_dssp HHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 33333344566666554 689999999999999875544433
No 123
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=6.4e-18 Score=176.49 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=114.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
...+|+++|.+|||||||++++++..+ +. ...|.+.....+.+++..+.+|||||...... ....++..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~~~ 389 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRP--------LWRHYYTG 389 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGSG--------GGGGGGTT
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCCEEEEEEECCCcHHHHH--------HHHHHhcc
Confidence 346899999999999999999997764 22 23477777888888889999999999754332 12223333
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHH--hhhhcCCC
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMA--SYRKMGPD 391 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 391 (435)
+|++++|+|+++ ..++++...++..+... ..++|+|+|+||+|+...... ....... ........
T Consensus 390 -ad~~i~V~D~~~--~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~ 458 (497)
T 3lvq_E 390 -TQGLIFVVDCAD--RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP--------HEIQEKLGLTRIRDRNW 458 (497)
T ss_dssp -CCEEEEEEETTC--GGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH--------HHHHHHTTCTTCCSSCE
T ss_pred -CCEEEEEEECcc--hhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH--------HHHHHHhchhhhhcCCe
Confidence 599999999984 45666666666666542 247999999999999764311 0111111 11112234
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcccccccCCCCCc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQMDRIKSRSNED 429 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~~~~~t~~~~~ 429 (435)
+++++||++|+||++++++|.+.+.....+.+|.+..+
T Consensus 459 ~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~ 496 (497)
T 3lvq_E 459 YVQPSCATSGDGLYEGLTWLTSNYKSKLAAALEHHHHH 496 (497)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHCC-------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCCCCcccccC
Confidence 69999999999999999999999999999888877543
No 124
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.75 E-value=1.7e-17 Score=151.41 Aligned_cols=163 Identities=15% Similarity=0.095 Sum_probs=105.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
...+|+++|.+|||||||++++.+... .+..++.++.+.....+.+++. .+.+|||+|....... +...+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~-------~~~~~ 77 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW-------LHDHC 77 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT-------TGGGH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh-------HHHhh
Confidence 346899999999999999999986332 3344555555655556666665 4578999997531100 11111
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
+ ..++++++|+|+++. .+++....|...+.... .+.|+++|+||+|+....... . .....+....+
T Consensus 78 ~-~~~~~~i~v~dv~~~--~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~-----~----~~~~~~a~~~~ 145 (192)
T 2cjw_A 78 M-QVGDAYLIVYSITDR--ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVS-----V----SEGRAXAVVFD 145 (192)
T ss_dssp H-HHCSEEEEEEETTCH--HHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSC-----H----HHHHHHHHHTT
T ss_pred c-ccCCEEEEEEECCCH--HHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccccc-----H----HHHHHHHHHhC
Confidence 2 225889999999843 45566656776666542 468999999999986532111 0 11112222234
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++|.||+++++++.+.+..
T Consensus 146 ~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 146 XKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CceEEeccccCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999987743
No 125
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.75 E-value=5e-18 Score=153.06 Aligned_cols=169 Identities=18% Similarity=0.120 Sum_probs=107.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|++|+|||||++++.+..+.. .+..|+.......+..++ ..+.+|||||....... ... .
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------~~~-~ 75 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RPL-S 75 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT--------GGG-G
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh--------HHh-h
Confidence 45689999999999999999999776532 233333333333444444 56899999997543211 111 2
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch---hhhHHHHHHHhhhhc-
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTE---DEDSEHLEMASYRKM- 388 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~~- 388 (435)
...++++++|+|+++ ..++++. ..|+..+....++.|+++|+||+|+........... ...........+...
T Consensus 76 ~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 76 YPDSDAVLICFDISR--PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp CTTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred cCCCcEEEEEEECCC--HHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 234589999999984 3455555 457778877666899999999999974310000000 000001112222222
Q ss_pred CCCcEEEcccC-CCCCHHHHHHHHHHHHh
Q 037423 389 GPDGAIRVSVM-NEEGLNELKDRVYQMLV 416 (435)
Q Consensus 389 ~~~~~i~vSA~-~g~GI~eL~~~i~~~l~ 416 (435)
+..+++++||+ +|.|++++++.+.+.+.
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 23589999999 68999999999998764
No 126
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.75 E-value=8.2e-18 Score=155.15 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=98.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---CceEEEEeCCCCCCCCchhhhHHHH-HHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---YQNFQITDTPGLLQRRDEDRNNLEK-LTLA 311 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---~~~~~liDTpG~~~~~~~~~~~ie~-~~~~ 311 (435)
..++|+++|++|+|||||++++++..+. ..++.++.+.. .+.++ +..+.+|||||..+ +.. +...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~--------~~~~~~~~ 74 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR-DTQTSITDSSA--IYKVNNNRGNSLTLIDLPGHES--------LRFQLLDR 74 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC-CBCCCCSCEEE--EEECSSTTCCEEEEEECCCCHH--------HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCcceeeE--EEEecCCCccEEEEEECCCChh--------HHHHHHHH
Confidence 4678999999999999999999977642 34444444433 35555 56799999999842 122 2222
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHh---cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHH----
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKER---FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMA---- 383 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~---~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~---- 383 (435)
++.. ++++++|+|++.. ..+..... .|...+... ..+.|+++|+||+|+............+........
T Consensus 75 ~~~~-~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 152 (214)
T 2fh5_B 75 FKSS-ARAVVFVVDSAAF-QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRS 152 (214)
T ss_dssp HGGG-EEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhh-CCEEEEEEECCCc-CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccch
Confidence 3333 5899999998731 00112222 233333221 236899999999999876432111111111110000
Q ss_pred ------------h-hhh---------cC--CCcEEEcccCCC------CCHHHHHHHHHHH
Q 037423 384 ------------S-YRK---------MG--PDGAIRVSVMNE------EGLNELKDRVYQM 414 (435)
Q Consensus 384 ------------~-~~~---------~~--~~~~i~vSA~~g------~GI~eL~~~i~~~ 414 (435)
. +.. .. ..+++++||++| .||++++++|.+.
T Consensus 153 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 153 AAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred hccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 0 000 00 457999999999 9999999999875
No 127
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.75 E-value=1.1e-17 Score=164.44 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=115.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|||||||++++++.. ..+++.+++|.+.....+.+ ++..+.+|||||..... .+........++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM---ENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH---HHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh---hhhhhhHHHHHh
Confidence 35689999999999999999988763 45667889999988888876 56789999999984320 000112233334
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHH---HHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTI---YKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP 390 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l---~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (435)
.. +|++++|+|+++ ..+.++...| +..+....++.|+++|+||+|+......... ..........+....+
T Consensus 79 ~~-ad~vi~V~D~t~--~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~---~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 79 QM-VQVLIHVFDVES--TEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREEL---FQIMMKNLSETSSEFG 152 (307)
T ss_dssp TT-CSEEEEEEETTC--SCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHH---HHHHHHHHHHHHHTTT
T ss_pred cc-CCEEEEEEECCC--hhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHH---HHHHHHHHHHHHHHcC
Confidence 44 599999999984 4566666444 4445544568999999999999763211000 0011122334444332
Q ss_pred ---CcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 391 ---DGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 391 ---~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.+++++||++ .|+.+++..+...+
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 6899999999 78888888877643
No 128
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.75 E-value=1.5e-17 Score=151.75 Aligned_cols=171 Identities=19% Similarity=0.169 Sum_probs=102.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCce--eeeeeEEEEE-eCCceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFT--TRGILMGHIN-LGYQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~t--T~~~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
.+..+|+++|.+|||||||++.+.+.... ....+. +.......+. .....+.+|||||.......... ...
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~ 91 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD-----YEM 91 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-----HHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-----ccc
Confidence 45689999999999999999988764321 121121 1111111121 23478999999998653221100 023
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh----
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK---- 387 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---- 387 (435)
++.. ++++++|+|+++....+......|+..+.....+.|+++|+||+|+............ ........+..
T Consensus 92 ~~~~-~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~--v~~~~~~~~~~~~~~ 168 (196)
T 3llu_A 92 IFRG-TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRD--IHQRANDDLADAGLE 168 (196)
T ss_dssp HHHT-CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHH--HHHHHHHHHHHTTCT
T ss_pred cccc-CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhH--HHHHHHHHHHHhhhh
Confidence 3334 5899999999853111223333455555444568999999999999764211000000 01111222333
Q ss_pred cCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 388 MGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 388 ~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
..+.+++++||++ .||+++++.+.+.+
T Consensus 169 ~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 169 KLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 3456899999999 99999999998754
No 129
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.75 E-value=1.8e-18 Score=179.00 Aligned_cols=159 Identities=23% Similarity=0.390 Sum_probs=109.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHH-H-
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA-V- 312 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~-~- 312 (435)
.+.+|+++|++|+|||||+|+|++.. ..+++.++||++.....+.+++..+.+|||||+.+.. +.++..... .
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~----~~ve~~gi~~~~ 298 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETS----DQVEKIGVERSR 298 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccch----hHHHHHHHHHHh
Confidence 45689999999999999999999764 3578889999999888888899999999999996532 222332211 1
Q ss_pred -HhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 313 -LTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 313 -l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
....+|++++|+|++ .+.+..+.. ++..+. .+|+++|+||+|+....... ....+. ...
T Consensus 299 ~~~~~aD~vl~VvD~s--~~~~~~~~~-i~~~l~----~~piivV~NK~Dl~~~~~~~-----------~~~~~~--~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAA--TGWTTGDQE-IYEQVK----HRPLILVMNKIDLVEKQLIT-----------SLEYPE--NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETT--TCSCHHHHH-HHHHHT----TSCEEEEEECTTSSCGGGST-----------TCCCCT--TCC
T ss_pred hhhhcCCEEEEEeccC--CCCCHHHHH-HHHhcc----CCcEEEEEECCCCCcchhhH-----------HHHHhc--cCC
Confidence 123359999999998 456666543 555443 47999999999997654211 000111 235
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++++||++|.|+++++++|.+.+...
T Consensus 359 ~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 QIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999999999988654
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.74 E-value=5.7e-18 Score=173.14 Aligned_cols=163 Identities=22% Similarity=0.294 Sum_probs=114.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCc-eEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQ-NFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~-~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
..++|+++|++|+|||||+|++++... .+++++++|.+.....+.+.+. .+.+|||||+.+.........+ .+..++
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~-~~~~~l 111 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVE-KARRVF 111 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHH-HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHH-HHHHHH
Confidence 457899999999999999999998776 5778899999999888888775 8999999999875432211122 233444
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.+ +|++++|+|++ ...... .|+..+.+. +.|+++|+||+|+...... .....+....+.++
T Consensus 112 ~~-aD~vllVvD~~----~~~~~~-~~l~~l~~~--~~piIvV~NK~Dl~~~~~~-----------~~~~~l~~~~g~~v 172 (423)
T 3qq5_A 112 YR-ADCGILVTDSA----PTPYED-DVVNLFKEM--EIPFVVVVNKIDVLGEKAE-----------ELKGLYESRYEAKV 172 (423)
T ss_dssp TS-CSEEEEECSSS----CCHHHH-HHHHHHHHT--TCCEEEECCCCTTTTCCCT-----------HHHHHSSCCTTCCC
T ss_pred hc-CCEEEEEEeCC----ChHHHH-HHHHHHHhc--CCCEEEEEeCcCCCCccHH-----------HHHHHHHHHcCCCE
Confidence 44 58999999983 334443 478888776 8999999999999876521 12223334445689
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+++||++|.|+++++++|.+.+.+.
T Consensus 173 ~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 173 LLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999999998655
No 131
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=163.53 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=110.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH 315 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~ 315 (435)
+..+|+++|.+|+|||||++++++..+. ..+ .|.+.....+...+..+.||||||...... ....++..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~-~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 232 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRP--------LWRHYFQN 232 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE-EEE--EETTEEEEEEEETTEEEEEEECC-----CC--------SHHHHHTT
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC-Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHH--------HHHHHhcc
Confidence 4568999999999999999999987753 223 366666777888889999999999754322 12333433
Q ss_pred CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEEEEEeccCCCCCCCccccchhhhHHHHHH-HhhhhcCCCc
Q 037423 316 LPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM-ASYRKMGPDG 392 (435)
Q Consensus 316 ~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 392 (435)
+|++++|+|+++. .++.....++..+.... .+.|+++|+||+|+.+..... +. ...+ .........+
T Consensus 233 -ad~vilV~D~~~~--~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~----~i---~~~~~~~~~~~~~~~ 302 (329)
T 3o47_A 233 -TQGLIFVVDSNDR--ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAA----EI---TDKLGLHSLRHRNWY 302 (329)
T ss_dssp -EEEEEEEEETTCS--SSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH----HH---HHHHTCTTCCSSCEE
T ss_pred -CCEEEEEEECCch--HHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHH----HH---HHHhchhhhhcCCCE
Confidence 4899999999854 55666655555554432 478999999999998654210 10 0111 1111223457
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.||++++++|.+.+.+
T Consensus 303 ~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 303 IQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999998754
No 132
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.60 E-value=1.2e-19 Score=166.52 Aligned_cols=169 Identities=17% Similarity=0.133 Sum_probs=109.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAV 312 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~ 312 (435)
.+..+|+++|.+|+|||||++++++..+. ..+..|+.+.....+..++ ..+.+|||||..+.. .....+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------~~~~~~ 98 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RLRPLS 98 (204)
Confidence 45678999999999999999999876552 3344455554444444444 456699999985432 122223
Q ss_pred HhcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhh---hHHHHHHHhhhhc
Q 037423 313 LTHLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDE---DSEHLEMASYRKM 388 (435)
Q Consensus 313 l~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~~~ 388 (435)
+.. +|++++|+|+++. .+.++.. .|+..+.....+.|+++|+||+|+...........+. .........+...
T Consensus 99 ~~~-~d~iilv~D~~~~--~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 3th5_A 99 YPQ-TDVFLICFSLVSP--ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
Confidence 333 4889999999844 4455553 5777777655578999999999997643211111000 0011122223333
Q ss_pred CCC-cEEEcccCCCCCHHHHHHHHHHHH
Q 037423 389 GPD-GAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 389 ~~~-~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
.+. +++++||++|.|+++++++|.+.+
T Consensus 176 ~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 176 IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 333 789999999999999999988754
No 133
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=8.2e-18 Score=155.24 Aligned_cols=169 Identities=18% Similarity=0.127 Sum_probs=108.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++++..+.. .+..|+.......+.+++ ..+.+|||||....... ...++
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 97 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV--------RPLSY 97 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT--------GGGGC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH--------HHhhc
Confidence 45789999999999999999999876542 223333333333444444 56899999997543211 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc-h--hhhHHHHHHHhhhhc-
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVT-E--DEDSEHLEMASYRKM- 388 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~-~--~~~~~~~~~~~~~~~- 388 (435)
..++++++|+|+++ ..++.+. ..|+..+.....+.|+++|+||+|+.......... . ...........+...
T Consensus 98 -~~~d~~ilv~D~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 98 -PDSDAVLICFDISR--PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred -cCCCEEEEEEECCC--HHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 33589999999984 3455555 46778887766689999999999997431000000 0 000001112222222
Q ss_pred CCCcEEEcccC-CCCCHHHHHHHHHHHHh
Q 037423 389 GPDGAIRVSVM-NEEGLNELKDRVYQMLV 416 (435)
Q Consensus 389 ~~~~~i~vSA~-~g~GI~eL~~~i~~~l~ 416 (435)
+..+++++||+ +|.||+++++.|.+.+.
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 22579999999 68999999999998764
No 134
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.73 E-value=1.6e-17 Score=150.02 Aligned_cols=166 Identities=17% Similarity=0.077 Sum_probs=101.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-CccccCCce-eeeeeEEEEEe-----CCceEEEEeCCCCCCCCchhhhHHHHHH
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFT-TRGILMGHINL-----GYQNFQITDTPGLLQRRDEDRNNLEKLT 309 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~t-T~~~~~~~~~~-----~~~~~~liDTpG~~~~~~~~~~~ie~~~ 309 (435)
..+|+++|++|||||||++++++.. .....+..| ..+.....+.. ....+.+|||||.... ....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~--------~~~~ 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEF--------YSTH 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHH--------HTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHH--------HHhh
Confidence 3689999999999999999999752 222222222 23332222221 3467899999997421 1111
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 310 LAVLTHLPTAILFVHDLSGECGT-SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~-s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
..++.. ++++++|+|+++ +. +......|+..+.....+.|+++|+||+|+...... .. ........+...
T Consensus 74 ~~~~~~-~~~~i~v~d~~~--~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~--~~~~~~~~~~~~ 144 (184)
T 2zej_A 74 PHFMTQ-RALYLAVYDLSK--GQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR----KA--CMSKITKELLNK 144 (184)
T ss_dssp HHHHHH-SEEEEEEEEGGG--CHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH----HH--HHHHHHHHTTTC
T ss_pred HHHccC-CcEEEEEEeCCc--chhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhh----HH--HHHHHHHHHHHh
Confidence 223333 478899999984 32 355666788887766567999999999998643210 00 001112334433
Q ss_pred CCCc----EEEcccCCCC-CHHHHHHHHHHHHhccc
Q 037423 389 GPDG----AIRVSVMNEE-GLNELKDRVYQMLVGQM 419 (435)
Q Consensus 389 ~~~~----~i~vSA~~g~-GI~eL~~~i~~~l~~~~ 419 (435)
.+.+ ++++||++|. |+++|++.|.+.+.+..
T Consensus 145 ~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 145 RGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred cCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 3444 8999999996 99999999999886644
No 135
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.73 E-value=1.1e-17 Score=159.67 Aligned_cols=179 Identities=20% Similarity=0.158 Sum_probs=113.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCc-eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHH---HHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPF-TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNL---EKLT 309 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~-tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~i---e~~~ 309 (435)
....+|+++|++|+|||||+|++++... ..+..+. +|.+.......+++..+.||||||+.+......... ....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999998773 4444444 788888888888899999999999976543322222 2222
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC---CCcEEEEEe-ccCCCCCCCccccchhhh-HHHHHHHh
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS---DHIWLDVVS-KCDLLQTSPVAYVTEDED-SEHLEMAS 384 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~---~~piIvV~N-K~Dl~~~~~~~~~~~~~~-~~~~~~~~ 384 (435)
..++ ..+|++++|+|++. ++..+.. +...+.+.+. ..|.++|+| |+|+.... ......+.. ........
T Consensus 100 ~~~~-~~~d~il~V~d~~~---~~~~~~~-~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 100 LLSA-PGPHVLLLVTQLGR---YTSQDQQ-AAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHT-TCCSEEEEEEETTC---CCHHHHH-HHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HhcC-CCCcEEEEEEeCCC---CCHHHHH-HHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 2233 34599999999983 4444443 3444554432 467787777 99997432 110000000 01111111
Q ss_pred hhhcCC--CcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 385 YRKMGP--DGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 385 ~~~~~~--~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
...... ...+++||++|.|++++++.|.+.+....
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 111110 11178999999999999999999987644
No 136
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.73 E-value=1.5e-17 Score=161.51 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=107.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC------ccccCCc----------------------eeeee------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP------EVCNYPF----------------------TTRGI------------ 274 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~------~v~~~~~----------------------tT~~~------------ 274 (435)
...++|+++|.+|+|||||+|+|++..+ .++..|+ +|.+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999998765 3344453 33321
Q ss_pred -----------eEEEEEe-CCceEEEEeCCCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHH
Q 037423 275 -----------LMGHINL-GYQNFQITDTPGLLQRR-----DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQ 337 (435)
Q Consensus 275 -----------~~~~~~~-~~~~~~liDTpG~~~~~-----~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~ 337 (435)
....+.. +...+.+|||||+.... ......+......++....+++++|+|++. +.+.++.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~--~~~~~~~ 181 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS--DLANSDA 181 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSS--CGGGCHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCc--chhhhHH
Confidence 0001111 13689999999997532 111124455566677666556668999884 4444454
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHh-hhh--cCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 338 FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMAS-YRK--MGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 338 ~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
..++..+... +.|+++|+||+|+....... .+ .+.. ... .+..+++++||++|.|++++++++.+.
T Consensus 182 ~~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~~---~~------~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LKIAKEVDPQ--GQRTIGVITKLDLMDEGTDA---RD------VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHHHCTT--CSSEEEEEECGGGSCTTCCC---HH------HHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHHHhCCC--CCeEEEEEEccccCCCCchH---HH------HHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 3455555443 78999999999998654211 00 1111 001 112368899999999999999998874
No 137
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=8.3e-18 Score=165.23 Aligned_cols=170 Identities=16% Similarity=0.109 Sum_probs=114.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCce--EEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN--FQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
...+|+++|.+|+|||||++++.+..+ ...+.+|+.+.....+..++.. +.+|||||....... ...++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~~ 224 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL--------RPLSY 224 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT--------GGGGC
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH--------HHHhc
Confidence 467899999999999999999987655 3445667776666666666655 459999998543211 11122
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHH-HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh---hhHHHHHHHhhhhcC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQF-TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED---EDSEHLEMASYRKMG 389 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~-~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 389 (435)
..+|++++|+|+++ +.++++.. .|+..+.....+.|+++|+||+|+...........+ ..........+....
T Consensus 225 -~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 301 (332)
T 2wkq_A 225 -PQTDVFLICFSLVS--PASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 301 (332)
T ss_dssp -TTCSEEEEEEETTC--HHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred -cCCCEEEEEEeCCC--HHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc
Confidence 33589999999984 34555554 577777776668999999999999654210000000 000011222333333
Q ss_pred CC-cEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 390 PD-GAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 390 ~~-~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+. +++++||++|.|++++++.|.+.+..
T Consensus 302 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 302 GAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 43 89999999999999999999987643
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.70 E-value=1.1e-16 Score=166.65 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=105.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------CccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------PEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKL 308 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~ 308 (435)
+..+|+++|++++|||||+++|++.. ......+++|.+.....+.+++..+.+|||||+.+ +...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~--------~~~~ 89 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD--------LIRA 89 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH--------HHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH--------HHHH
Confidence 35689999999999999999999765 23445667888877777888889999999999732 1222
Q ss_pred HHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh-
Q 037423 309 TLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK- 387 (435)
Q Consensus 309 ~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 387 (435)
....+. .+|++++|+|++ .|...+... .+..+... +.|+++|+||+|+.+... .+.. ...+..+..
T Consensus 90 ~~~~~~-~aD~~ilVvda~--~g~~~qt~e-~l~~~~~~--~ip~IvviNK~Dl~~~~~----~~~~---~~~l~~~l~~ 156 (482)
T 1wb1_A 90 VVSAAD-IIDLALIVVDAK--EGPKTQTGE-HMLILDHF--NIPIIVVITKSDNAGTEE----IKRT---EMIMKSILQS 156 (482)
T ss_dssp HHHHTT-SCCEEEEEEETT--TCSCHHHHH-HHHHHHHT--TCCBCEEEECTTSSCHHH----HHHH---HHHHHHHHHH
T ss_pred HHHHHh-hCCEEEEEEecC--CCccHHHHH-HHHHHHHc--CCCEEEEEECCCcccchh----HHHH---HHHHHHHHhh
Confidence 333333 359999999998 456666655 33444443 788999999999985321 1111 112222221
Q ss_pred ---cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 388 ---MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 388 ---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
....+++++||++|.|+++|+++|.+.+.
T Consensus 157 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 157 THNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 11468999999999999999999999875
No 139
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.69 E-value=1e-16 Score=154.74 Aligned_cols=168 Identities=21% Similarity=0.195 Sum_probs=92.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCC------cee--eeeeEEEEEeCC--ceEEEEeCCCCCCCCch---hh-
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYP------FTT--RGILMGHINLGY--QNFQITDTPGLLQRRDE---DR- 302 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~------~tT--~~~~~~~~~~~~--~~~~liDTpG~~~~~~~---~~- 302 (435)
.++|+++|.+|+|||||+|+|++.......++ ..| .+.....+..++ ..+.+|||||+.+.... ..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 36899999999999999999887765444432 233 333344444444 37899999999654321 11
Q ss_pred --hHHHHHHHHHHhc------------CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc
Q 037423 303 --NNLEKLTLAVLTH------------LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV 368 (435)
Q Consensus 303 --~~ie~~~~~~l~~------------~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~ 368 (435)
+.++.....++.. ..|+++|+++.+. .+....+.. +++.+.. ++|+|+|+||+|+....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~-~~~~~~d~~-~l~~l~~---~~pvi~V~nK~D~~~~~-- 160 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIE-FMKRLHE---KVNIIPLIAKADTLTPE-- 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC-SSCCHHHHH-HHHHHTT---TSCEEEEESSGGGSCHH--
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC-CCCCHHHHH-HHHHHhc---cCCEEEEEeccCCCCHH--
Confidence 1122221222322 1368888888764 356666654 5666655 68999999999987543
Q ss_pred cccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 369 AYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+.......+.......+.+++++||++++|+++++++|.+.++
T Consensus 161 -----e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 -----ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp -----HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred -----HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 1111122233333334567899999999999999999988653
No 140
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.69 E-value=1.6e-16 Score=167.64 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=102.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEE--------EEe----CCceEEEEeCCCCCCCCchhh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGH--------INL----GYQNFQITDTPGLLQRRDEDR 302 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~--------~~~----~~~~~~liDTpG~~~~~~~~~ 302 (435)
....+|+++|.+|||||||++++++..+... +..| .+..... +.. .+..+.+|||||.......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~-~~~t-~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~-- 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPK-ESQT-HGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS-- 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCc-cceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH--
Confidence 4567899999999999999999998765322 2111 1111111 111 2478999999997543321
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHH
Q 037423 303 NNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEM 382 (435)
Q Consensus 303 ~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 382 (435)
...++.+ ++++++|+|++. .++...|+..+.....+.|+|+|+||+|+....... ....
T Consensus 115 ------~~~~l~~-~d~ii~V~D~s~-----~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~---------~~~~ 173 (535)
T 3dpu_A 115 ------HQFFMTR-SSVYMLLLDSRT-----DSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE---------QKKI 173 (535)
T ss_dssp ------CHHHHHS-SEEEEEEECGGG-----GGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC---------HHHH
T ss_pred ------HHHHccC-CcEEEEEEeCCC-----chhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC---------HHHH
Confidence 2223444 589999999873 255566899998886679999999999997654221 1122
Q ss_pred HhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcccc
Q 037423 383 ASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQMD 420 (435)
Q Consensus 383 ~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~~ 420 (435)
.......+.+++++||++|.||+++++.+.+.+.....
T Consensus 174 ~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 174 NERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp HHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred HHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 23333334579999999999999999999999876543
No 141
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.68 E-value=3.7e-16 Score=142.78 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=110.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc--eEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ--NFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+++++|++|+|||||++++++..+.....+..+.+...+.+.+++. .+.+|||||...... .....+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--------~~~~~~~ 76 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--------ITSAYYR 76 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--------CCHHHHT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--------hhHHHHh
Confidence 468999999999999999999987654444444445556667777774 567899999754321 1122233
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
.++++++|+|++. ..+..+...|+..+.... .+.|+++|+||+|+........ .....+.......+
T Consensus 77 -~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~---------~~a~~l~~~~~~~~ 144 (199)
T 2f9l_A 77 -GAVGALLVYDIAK--HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT---------DEARAFAEKNNLSF 144 (199)
T ss_dssp -TCSEEEEEEETTC--HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH---------HHHHHHHHHTTCEE
T ss_pred -cCCEEEEEEECcC--HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH---------HHHHHHHHHcCCeE
Confidence 3488999999884 344555556777666542 3689999999999965332110 11222333344678
Q ss_pred EEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 394 IRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+.+||+++.|++++++.+.+.+...
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887543
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.67 E-value=6.8e-16 Score=158.91 Aligned_cols=160 Identities=14% Similarity=0.030 Sum_probs=101.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-------------------------------ccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-------------------------------EVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-------------------------------~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
...+|+++|++|+|||||+++|+.... .....+++|.+.....+..++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 457899999999999999999954311 1122357888888888888889
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCC-------HHHHHHHHHHHHHhcCCCc-EEEE
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTS-------PSDQFTIYKEIKERFSDHI-WLDV 356 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s-------~~~~~~l~~~l~~~~~~~p-iIvV 356 (435)
.+.+|||||+.+. ...+...+.. +|++++|+|++. |.. .+... .+..+... +.| +|+|
T Consensus 96 ~~~iiDTPGh~~f--------~~~~~~~~~~-aD~~ilVVDa~~--g~~e~~~~~~~qt~e-~l~~~~~~--~v~~iIvv 161 (439)
T 3j2k_7 96 HFTILDAPGHKSF--------VPNMIGGASQ-ADLAVLVISARK--GEFETGFEKGGQTRE-HAMLAKTA--GVKHLIVL 161 (439)
T ss_pred EEEEEECCChHHH--------HHHHHhhHhh-CCEEEEEEECCC--CccccccCCCchHHH-HHHHHHHc--CCCeEEEE
Confidence 9999999998542 1223333333 599999999984 332 23333 23333333 566 9999
Q ss_pred EeccCCCCCCCccccchhhhHHHHHHHhhhhc---CCCcEEEcccCCCCCHHHHHH
Q 037423 357 VSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM---GPDGAIRVSVMNEEGLNELKD 409 (435)
Q Consensus 357 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~vSA~~g~GI~eL~~ 409 (435)
+||+|+...+......++.......+...... ...+++++||++|.|++++.+
T Consensus 162 iNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 162 INKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999965321111111111111111111111 135799999999999999665
No 143
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.67 E-value=1.2e-17 Score=175.17 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=116.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
+.++|+++|++|+|||||+++|.+..+.....+++|.+.....+.+ ++..+.||||||+.+..... ... .
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~--------~~~-~ 73 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR--------ARG-T 73 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB--------BSS-S
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH--------HHH-H
Confidence 5688999999999999999999987766667788888887777666 46789999999986543221 111 2
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc--CCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM--GPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 392 (435)
..+|++++|+|++ .+...+... .+..+... +.|+++|+||+|+....... .............. ...+
T Consensus 74 ~~aD~vILVVDa~--dg~~~qt~e-~l~~~~~~--~vPiIVViNKiDl~~~~~~~-----v~~~l~~~~~~~e~~~~~~~ 143 (537)
T 3izy_P 74 QVTDIVILVVAAD--DGVMKQTVE-SIQHAKDA--HVPIVLAINKCDKAEADPEK-----VKKELLAYDVVCEDYGGDVQ 143 (537)
T ss_dssp BSBSSCEEECBSS--SCCCHHHHH-HHHHHHTT--TCCEEECCBSGGGTTTSCCS-----SSSHHHHTTSCCCCSSSSEE
T ss_pred ccCCEEEEEEECC--CCccHHHHH-HHHHHHHc--CCcEEEEEecccccccchHH-----HHHHHHhhhhhHHhcCCCce
Confidence 3358899999998 567777765 44555554 78999999999997543211 01111111111111 1247
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
++++||++|.|+++|++++...+..
T Consensus 144 iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 144 AVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp ECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCchhHHHHHHHhhhc
Confidence 9999999999999999999988754
No 144
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.66 E-value=7e-16 Score=157.09 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=102.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeee--------------e-----EEEEEeCCceEEEEeCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGI--------------L-----MGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~--------------~-----~~~~~~~~~~~~liDTpG~ 294 (435)
.+..+|+++|++|+|||||+++|++... ....++.++... . ..........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 4568999999999999999999987432 111111111100 0 0000011267899999997
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchh
Q 037423 295 LQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTED 374 (435)
Q Consensus 295 ~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~ 374 (435)
.+. .......+.. +|++++|+|++ .+.+..+...++..+... ..+|+++|+||+|+.+....
T Consensus 86 ~~~--------~~~~~~~~~~-~D~~ilVvda~--~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~------ 147 (403)
T 3sjy_A 86 EVL--------MATMLSGAAL-MDGAILVVAAN--EPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEA------ 147 (403)
T ss_dssp GGG--------HHHHHHHHTT-CSEEEEEEETT--SCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHH------
T ss_pred HHH--------HHHHHHHHhh-CCEEEEEEECC--CCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHH------
Confidence 432 1223334443 59999999998 445333333455555554 34699999999999864311
Q ss_pred hhHHHHHHHhhh---hcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 375 EDSEHLEMASYR---KMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 375 ~~~~~~~~~~~~---~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
......+..+. .....+++++||++|.|+++|+++|.+.+...
T Consensus 148 -~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 148 -LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp -HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred -HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 11111222222 12246899999999999999999999877543
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.66 E-value=3.9e-16 Score=164.03 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=85.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC----------------C------ccccCCceeeeeeEEEEEeCCceEEEEeCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK----------------P------EVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~----------------~------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 294 (435)
.++|+++|++|+|||||+++|+... . .....+++|.......+.+++..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4689999999999999999996110 0 01113566777777888889999999999999
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 295 LQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 295 ~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.+... .+..++.. +|++++|+|++ .+.+.++.. ++..+... +.|+++|+||+|+...
T Consensus 93 ~df~~--------~~~~~l~~-aD~allVvDa~--~g~~~~t~~-~~~~~~~~--~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 93 ADFTE--------DTYRTLTA-VDSALMVIDAA--KGVEPRTIK-LMEVCRLR--HTPIMTFINKMDRDTR 149 (528)
T ss_dssp TTCCH--------HHHHGGGG-CSEEEEEEETT--TCSCHHHHH-HHHHHHTT--TCCEEEEEECTTSCCS
T ss_pred hhHHH--------HHHHHHHh-CCEEEEEEeCC--CCCCHHHHH-HHHHHHHc--CCCEEEEEeCCCCccc
Confidence 76542 23344444 49999999998 567777766 45555554 7899999999999754
No 146
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.65 E-value=5.9e-15 Score=144.48 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=104.1
Q ss_pred HhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCCc------cccCC---ceeeee----------------------
Q 037423 226 TLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKPE------VCNYP---FTTRGI---------------------- 274 (435)
Q Consensus 226 ~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~------v~~~~---~tT~~~---------------------- 274 (435)
.++.+...+...+.|+++|.+|+|||||+|+|++..+. +...| .++++.
T Consensus 13 ~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (315)
T 1jwy_B 13 VFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMF 92 (315)
T ss_dssp HTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCB
T ss_pred HHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhccccccc
Confidence 34444322456789999999999999999999987641 22333 222210
Q ss_pred ----------------e------------EEE-EEeCCceEEEEeCCCCCCCCc-----hhhhHHHHHHHHHHhcCCcEE
Q 037423 275 ----------------L------------MGH-INLGYQNFQITDTPGLLQRRD-----EDRNNLEKLTLAVLTHLPTAI 320 (435)
Q Consensus 275 ----------------~------------~~~-~~~~~~~~~liDTpG~~~~~~-----~~~~~ie~~~~~~l~~~~d~i 320 (435)
. ... ...++..+.+|||||+.+.+. .....+...+..++... |++
T Consensus 93 ~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~i 171 (315)
T 1jwy_B 93 YDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQ-NAI 171 (315)
T ss_dssp CCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHST-TEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCC-CeE
Confidence 0 000 111346799999999975321 11223444555566654 889
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc---c
Q 037423 321 LFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV---S 397 (435)
Q Consensus 321 l~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---S 397 (435)
++|+|++.. +....+...+...+.. .+.|+++|+||+|+....... . ..+.........+++++ |
T Consensus 172 ilvvd~~~~-~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~~------~---~~~~~~~~~~~~~~~~v~~~s 239 (315)
T 1jwy_B 172 IVAVTPANT-DLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTDA------M---EVLTGRVIPLTLGFIGVINRS 239 (315)
T ss_dssp EEEEEESSS-CSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCCC------H---HHHTTSSSCCTTCEEECCCCC
T ss_pred EEEEEecCc-chhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchHH------H---HHHhCCCccCCCCeEEEecCC
Confidence 999997432 3333333235555544 378999999999998654210 0 11111000111234444 5
Q ss_pred cCC---CCCHHHHHHHHHHHHhcc
Q 037423 398 VMN---EEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 398 A~~---g~GI~eL~~~i~~~l~~~ 418 (435)
+.+ +.|++++++.+.+.+...
T Consensus 240 a~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 240 QEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred hhhhccCCCHHHHHHHHHHHHhCC
Confidence 555 789999999999988764
No 147
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=2.7e-15 Score=136.44 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=109.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCce--EEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQN--FQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
..+++++|++|+|||||++++++..+.....+..+.+...+.+.+++.. +.+|||||....... ....+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~--------~~~~~~ 100 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI--------TSAYYR 100 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC--------CHHHHT
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh--------hHHHhh
Confidence 4689999999999999999999876644445555556666777777754 457999998654321 112222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcE
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF-SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGA 393 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~-~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (435)
..+++++|+|.+.. .+.++...|+..+.... .+.|+++|+||+|+.+..... ......+.......+
T Consensus 101 -~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~---------~~~a~~l~~~~~~~~ 168 (191)
T 1oix_A 101 -GAVGALLVYDIAKH--LTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP---------TDEARAFAEKNGLSF 168 (191)
T ss_dssp -TCCEEEEEEETTCH--HHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC---------HHHHHHHHHHTTCEE
T ss_pred -cCCEEEEEEECcCH--HHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC---------HHHHHHHHHHcCCEE
Confidence 34789999998742 33445545666665532 368999999999996533211 011222333345678
Q ss_pred EEcccCCCCCHHHHHHHHHHHH
Q 037423 394 IRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 394 i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+.+||+++.|++++++.+.+.+
T Consensus 169 ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 169 IETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 148
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=3.4e-16 Score=156.65 Aligned_cols=168 Identities=21% Similarity=0.272 Sum_probs=105.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC------ccccCCc----------------------eeeee------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP------EVCNYPF----------------------TTRGI------------ 274 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~------~v~~~~~----------------------tT~~~------------ 274 (435)
...++|+++|.+|+|||||+|+|++..+ .+...|+ +|.+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999998764 2333344 22220
Q ss_pred -----------eEEEEEe-CCceEEEEeCCCCCCCCc-----hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHH
Q 037423 275 -----------LMGHINL-GYQNFQITDTPGLLQRRD-----EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQ 337 (435)
Q Consensus 275 -----------~~~~~~~-~~~~~~liDTpG~~~~~~-----~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~ 337 (435)
....+.. ++..+.||||||+..... ...+.+..+...++....+++++|+|++. +....+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~--~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS--DLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTS--CGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCC--ccchhHH
Confidence 0011111 246799999999976421 11234555666677776677888888763 3444443
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh-hcCCCcEEEcccCCCCCHHHHHHHHHH
Q 037423 338 FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR-KMGPDGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 338 ~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
..++..+.. .+.|+++|+||+|+.+..... .+ ......+. ..+..+++++||++|.|++++++++.+
T Consensus 187 ~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~---~~----~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDP--QGQRTIGVITKLDLMDEGTDA---RD----VLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCT--TCTTEEEEEECGGGSCTTCCC---HH----HHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCc--CCCceEEEeccccccCcchhH---HH----HHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 335555444 378999999999998654210 00 00000000 011235789999999999999999877
No 149
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.2e-15 Score=151.40 Aligned_cols=121 Identities=23% Similarity=0.316 Sum_probs=91.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL 316 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~ 316 (435)
...|+++|.||||||||+|+|++.+..++++||||+++..+.+.+++.+++++||||+.......... ....+..++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~-g~~~l~~i~~- 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGR-GKQVIAVART- 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CH-HHHHHHHHHH-
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHH-HHHHHHHHHh-
Confidence 35899999999999999999999999999999999999999999999999999999998765443322 2223344444
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh---cCCCcEEEEEeccCCC
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKER---FSDHIWLDVVSKCDLL 363 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~---~~~~piIvV~NK~Dl~ 363 (435)
+|++++|+|+++. ..+...+..++... ...+|.++|+||+|..
T Consensus 150 ad~il~vvD~~~p----~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 150 CNLLFIILDVNKP----LHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp CSEEEEEEETTSH----HHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cCccccccccCcc----HHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4999999998732 34444444555443 2457889999999963
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=5.4e-15 Score=150.74 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=95.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC---CccccCCceeeeeeEEEEEe---------------C--------CceEEEE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK---PEVCNYPFTTRGILMGHINL---------------G--------YQNFQIT 289 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~---~~v~~~~~tT~~~~~~~~~~---------------~--------~~~~~li 289 (435)
...+|+++|+.++|||||+++|++.. ......++.|.+.......+ + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45789999999999999999998543 22223355666544332222 1 1578999
Q ss_pred eCCCCCCCCchhhhHHHHHHHHHHh--cCCcEEEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 290 DTPGLLQRRDEDRNNLEKLTLAVLT--HLPTAILFVHDLSGECGT-SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 290 DTpG~~~~~~~~~~~ie~~~~~~l~--~~~d~il~ViD~s~~~g~-s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
||||+.+ +....+. ..+|++++|+|+++ +. ..+... .+..+... ...|+++|+||+|+.+..
T Consensus 87 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~--g~~~~qt~e-~l~~~~~l-~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 87 DSPGHET-----------LMATMLSGASLMDGAILVIAANE--PCPQPQTKE-HLMALEIL-GIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp ECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTS--CSSCHHHHH-HHHHHHHT-TCCCEEEEEECTTSSCTT
T ss_pred ECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCC--CCCCchhHH-HHHHHHHc-CCCeEEEEEEccCCCCHH
Confidence 9999732 2222222 23599999999984 44 444444 23333333 346899999999998754
Q ss_pred CccccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 367 PVAYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.... .. ..+..+.. ....+++++||++|.|+++|+++|.+.+..
T Consensus 152 ~~~~----~~---~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 152 QAEE----NY---EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTTT----HH---HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHH----HH---HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2111 11 11222221 234689999999999999999999987654
No 151
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.63 E-value=2.4e-15 Score=144.07 Aligned_cols=129 Identities=22% Similarity=0.271 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL 313 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l 313 (435)
.+..+|+++|++|+|||||+|++++... .+++++++|.......+.+++..+.+|||||+.+.........+... ..+
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~-~~l 112 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIK-GFL 112 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHH-HHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHH-HHH
Confidence 3567899999999999999999998775 67788899998888888889999999999999776543322222222 222
Q ss_pred -hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcC---CCcEEEEEeccCCCCCC
Q 037423 314 -THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFS---DHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 314 -~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~---~~piIvV~NK~Dl~~~~ 366 (435)
....++++||+|++.. .++..+. .++..+...+. ..|+++|+||+|+....
T Consensus 113 ~~~~~~~il~V~~~d~~-~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~ 167 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVY-AVDELDK-QVVIAITQTFGKEIWCKTLLVLTHAQFSPPD 167 (262)
T ss_dssp TTCEECEEEEEEESSCS-CCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECTTCCCST
T ss_pred hcCCCCEEEEEEcCCCC-CCCHHHH-HHHHHHHHHhchhhhcCEEEEEeCcccCCCC
Confidence 2235889999988753 3444443 36777776543 24999999999997543
No 152
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.63 E-value=3.3e-15 Score=152.28 Aligned_cols=168 Identities=25% Similarity=0.360 Sum_probs=119.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-ceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-QNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
.+..++++|++|+|||||++++++..+.+++++++|.....+.+.+++ ..+.++||||+.+....... +.......+.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~-L~~~fl~~~e 234 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG-LGLEFLRHIA 234 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC-SCHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh-hhHHHHHHHH
Confidence 456799999999999999999999888888999999998888888775 78999999999764322111 0001112222
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc---CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF---SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~---~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
..+.+++++|++ . ....+...+.+++.... ..+|.++|+||+|+.... ....+.......+.
T Consensus 235 -ra~~lL~vvDls-~--~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~-----------~~~~l~~~l~~~g~ 299 (416)
T 1udx_A 235 -RTRVLLYVLDAA-D--EPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE-----------AVKALADALAREGL 299 (416)
T ss_dssp -SSSEEEEEEETT-S--CHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH-----------HHHHHHHHHHTTTS
T ss_pred -HHHhhhEEeCCc-c--CCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHH-----------HHHHHHHHHHhcCC
Confidence 348899999997 2 23444444555554431 358999999999986431 11122222222345
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
+++.+||++++|+++|+++|.+.+....
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred eEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 7999999999999999999999997654
No 153
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.63 E-value=2.6e-15 Score=151.18 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=106.2
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCc
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPT 318 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d 318 (435)
.|+++|++++|||||+++|+ ..++|.+.....+.+++..+.+|||||+.+... .....+ ..+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~--------~~~~~~-~~aD 85 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLK--------SLITAL-NISD 85 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHH--------HHHHHH-HTCS
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHH--------HHHHHH-HHCC
Confidence 89999999999999999998 346787877777888888999999999976421 122233 3459
Q ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcE-EEEEe-ccCCCCCCCccccchhhhHHHHHHHhhhhc---CCCcE
Q 037423 319 AILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIW-LDVVS-KCDLLQTSPVAYVTEDEDSEHLEMASYRKM---GPDGA 393 (435)
Q Consensus 319 ~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~pi-IvV~N-K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 393 (435)
++++|+| + .+...+... ++..+... +.|. |+|+| |+|+ +... .+ .....+..+... ...++
T Consensus 86 ~ailVvd-~--~g~~~qt~e-~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----~~---~~~~~i~~~l~~~~~~~~~i 151 (370)
T 2elf_A 86 IAVLCIP-P--QGLDAHTGE-CIIALDLL--GFKHGIIALTRSDST-HMHA----ID---ELKAKLKVITSGTVLQDWEC 151 (370)
T ss_dssp EEEEEEC-T--TCCCHHHHH-HHHHHHHT--TCCEEEEEECCGGGS-CHHH----HH---HHHHHHHHHTTTSTTTTCEE
T ss_pred EEEEEEc-C--CCCcHHHHH-HHHHHHHc--CCCeEEEEEEeccCC-CHHH----HH---HHHHHHHHHHHhcCCCceEE
Confidence 9999999 6 466555554 44445544 6777 99999 9999 4220 01 111222333221 23689
Q ss_pred EE--cccCC---CCCHHHHHHHHHHHHhc
Q 037423 394 IR--VSVMN---EEGLNELKDRVYQMLVG 417 (435)
Q Consensus 394 i~--vSA~~---g~GI~eL~~~i~~~l~~ 417 (435)
++ +||++ |.|+++|++.|.+.+..
T Consensus 152 i~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 152 ISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp EECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred EecccccccCcCCCCHHHHHHHHHhhccc
Confidence 99 99999 99999999999988764
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=6e-15 Score=150.48 Aligned_cols=162 Identities=13% Similarity=0.122 Sum_probs=103.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC---CccccCCceeeeeeEEEEEeC-----------------------CceEEEE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK---PEVCNYPFTTRGILMGHINLG-----------------------YQNFQIT 289 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~---~~v~~~~~tT~~~~~~~~~~~-----------------------~~~~~li 289 (435)
...+|+++|++++|||||+++|++.. ......++.|.+.......+. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34679999999999999999998543 222334566765544333321 1578999
Q ss_pred eCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCC-CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc
Q 037423 290 DTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGT-SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV 368 (435)
Q Consensus 290 DTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~-s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~ 368 (435)
||||+.+ +.......+. .+|++++|+|++ .+. ..+.... +..+... ...|+++|+||+|+.+...
T Consensus 89 DtPGh~~--------f~~~~~~~~~-~~D~~ilVvda~--~g~~~~qt~e~-l~~~~~~-~~~~iivviNK~Dl~~~~~- 154 (410)
T 1kk1_A 89 DAPGHEA--------LMTTMLAGAS-LMDGAILVIAAN--EPCPRPQTREH-LMALQII-GQKNIIIAQNKIELVDKEK- 154 (410)
T ss_dssp ECSSHHH--------HHHHHHHCGG-GCSEEEEEEETT--SCSSCHHHHHH-HHHHHHH-TCCCEEEEEECGGGSCHHH-
T ss_pred ECCChHH--------HHHHHHhhhh-hCCEEEEEEECC--CCCCChhHHHH-HHHHHHc-CCCcEEEEEECccCCCHHH-
Confidence 9999732 1112222222 359999999998 444 4444442 3334433 2468999999999976431
Q ss_pred cccchhhhHHHHHHHhhhh---cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 369 AYVTEDEDSEHLEMASYRK---MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.......+..+.. ....+++++||++|.|+++|+++|.+.+..
T Consensus 155 ------~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 155 ------ALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp ------HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ------HHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 1111122223322 134689999999999999999999987754
No 155
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.62 E-value=4.2e-17 Score=169.72 Aligned_cols=160 Identities=19% Similarity=0.184 Sum_probs=108.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLT 314 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~ 314 (435)
++.++|+++|++++|||||+++|.+..+.....+++|.+.....+.+++..+.+|||||+.+..... . ...
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~--------~-~~~ 72 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR--------A-RGA 72 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB--------C-SSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH--------H-HHH
Confidence 3678999999999999999999987655445556777777666677778899999999987653221 1 112
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc--CCCc
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM--GPDG 392 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 392 (435)
..+|++++|+|++ .|...+... .+..+... +.|+++|+||+|+...+... ...++... ..+... ...+
T Consensus 73 ~~aD~aILVVda~--~g~~~qT~e-~l~~~~~~--~vPiIVviNKiDl~~~~~~~-v~~~l~~~----~~~~~~~~~~~~ 142 (501)
T 1zo1_I 73 QATDIVVLVVAAD--DGVMPQTIE-AIQHAKAA--QVPVVVAVNKIDKPEADPDR-VKNELSQY----GILPEEWGGESQ 142 (501)
T ss_dssp BSCSSEEEEEETT--TBSCTTTHH-HHHHHHHT--TCCEEEEEECSSSSTTCCCC-TTCCCCCC----CCCTTCCSSSCE
T ss_pred hhCCEEEEEeecc--cCccHHHHH-HHHHHHhc--CceEEEEEEeccccccCHHH-HHHHHHHh----hhhHHHhCCCcc
Confidence 3458899999988 445455544 33344443 78999999999997542110 00000000 000111 1258
Q ss_pred EEEcccCCCCCHHHHHHHHHH
Q 037423 393 AIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~ 413 (435)
++++||++|.|+++|++++..
T Consensus 143 ~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 143 FVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EEECCTTTCTTCTTHHHHTTT
T ss_pred EEEEeeeeccCcchhhhhhhh
Confidence 999999999999999999875
No 156
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.62 E-value=1e-14 Score=140.30 Aligned_cols=128 Identities=20% Similarity=0.254 Sum_probs=93.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH-
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL- 313 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l- 313 (435)
..++|+++|.+|+|||||+|++++... .+++.+++|.+.....+..++..+.+|||||+.+........++.. ..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i-~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNII-KSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHH-HHHhh
Confidence 457899999999999999999998765 5677888888887777888888999999999976543322222222 1222
Q ss_pred hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC---CcEEEEEeccCCCCCC
Q 037423 314 THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD---HIWLDVVSKCDLLQTS 366 (435)
Q Consensus 314 ~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~---~piIvV~NK~Dl~~~~ 366 (435)
...+|+++||+|++.. .++..+. .++..+...+.. .|+++|+||+|+....
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~-~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDK-LVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHH-HHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHH-HHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2235899999998753 4454444 377777765432 6999999999997544
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.62 E-value=5.1e-15 Score=157.38 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=100.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCc---------------cccCCceeeeeeEEEEEeC-----CceEEEEeCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPE---------------VCNYPFTTRGILMGHINLG-----YQNFQITDTPGLLQ 296 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~---------------v~~~~~tT~~~~~~~~~~~-----~~~~~liDTpG~~~ 296 (435)
-++++++|++++|||||+++|+..... .....+.|.......+.+. +..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 357999999999999999999752110 0112345555444555553 25789999999965
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhh
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDED 376 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~ 376 (435)
... .....+.. +|++++|+|++ .|.+.+....|...+. . +.|+++|+||+|+..... .
T Consensus 84 F~~--------ev~~~l~~-aD~aILVVDa~--~gv~~qt~~~~~~~~~-~--~ipiIvViNKiDl~~a~~-----~--- 141 (599)
T 3cb4_D 84 FSY--------EVSRSLAA-CEGALLVVDAG--QGVEAQTLANCYTAME-M--DLEVVPVLNKIDLPAADP-----E--- 141 (599)
T ss_dssp GHH--------HHHHHHHH-CSEEEEEEETT--TCCCTHHHHHHHHHHH-T--TCEEEEEEECTTSTTCCH-----H---
T ss_pred HHH--------HHHHHHHH-CCEEEEEEECC--CCCCHHHHHHHHHHHH-C--CCCEEEeeeccCcccccH-----H---
Confidence 321 22333444 48999999998 5677777776655443 2 789999999999976531 1
Q ss_pred HHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 377 SEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.....+.........+++++||++|.|+++|++++.+.+...
T Consensus 142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 111222222222234689999999999999999999988654
No 158
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=149.02 Aligned_cols=171 Identities=13% Similarity=0.078 Sum_probs=102.0
Q ss_pred CCCCEEEEecCC---------CCChhhHHHHhhCC---CCccccCCce-eeeeeEEE----------------EEeCCce
Q 037423 235 LETPTLCLVGAP---------NVGKSSLVRVISTG---KPEVCNYPFT-TRGILMGH----------------INLGYQN 285 (435)
Q Consensus 235 ~~~~~v~~~G~~---------~~GKssl~~~l~~~---~~~v~~~~~t-T~~~~~~~----------------~~~~~~~ 285 (435)
....+|+++|.+ |||||||++++++. .+.....+.+ +.+..... ++.....
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456799999999 99999999999984 3333333322 22221111 1112356
Q ss_pred EEEEe------CCCCCCCCchhhhHHHHHH---------HHHHh--------------------cCCcEEEEEEeCCCCC
Q 037423 286 FQITD------TPGLLQRRDEDRNNLEKLT---------LAVLT--------------------HLPTAILFVHDLSGEC 330 (435)
Q Consensus 286 ~~liD------TpG~~~~~~~~~~~ie~~~---------~~~l~--------------------~~~d~il~ViD~s~~~ 330 (435)
+.+|| |||...........+...+ ..++. ..+|++++|+|+++.+
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 77887 6666433221000000000 00000 0259999999998532
Q ss_pred CCCHHHHHHHHHHHHHh--cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc-CCCcEEEcccCCCCCHHHH
Q 037423 331 GTSPSDQFTIYKEIKER--FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM-GPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 331 g~s~~~~~~l~~~l~~~--~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~vSA~~g~GI~eL 407 (435)
..+++....|+..+... ..+.|+++|+||+|+..... ......+... .+.+++++||++|.|++++
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~-----------v~~~~~~~~~~~~~~~~e~SAk~g~gv~el 245 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY-----------IRDAHTFALSKKNLQVVETSARSNVNVDLA 245 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH-----------HHHHHHHHHTSSSCCEEECBTTTTBSHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH-----------HHHHHHHHHhcCCCeEEEEECCCCCCHHHH
Confidence 25777777788877654 25789999999999854220 1122233322 3468999999999999999
Q ss_pred HHHHHHHHh
Q 037423 408 KDRVYQMLV 416 (435)
Q Consensus 408 ~~~i~~~l~ 416 (435)
+++|.+.+.
T Consensus 246 f~~l~~~l~ 254 (255)
T 3c5h_A 246 FSTLVQLID 254 (255)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.61 E-value=2.5e-15 Score=159.59 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=102.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCc---------------cccCCceeeeeeEEEEEeC---C--ceEEEEeCCCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPE---------------VCNYPFTTRGILMGHINLG---Y--QNFQITDTPGLLQ 296 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~---------------v~~~~~tT~~~~~~~~~~~---~--~~~~liDTpG~~~ 296 (435)
.++++++|++++|||||+++|+..... .....+.|.......+.+. + ..+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 457999999999999999999742100 0111344444333444443 2 5788999999976
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhh
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDED 376 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~ 376 (435)
... ....++.. +|++++|+|++ .|.+.+....|..... . +.|+++|+||+|+..... .
T Consensus 86 F~~--------ev~r~l~~-aD~aILVVDa~--~gv~~qt~~~~~~a~~-~--~ipiIvviNKiDl~~a~~-----~--- 143 (600)
T 2ywe_A 86 FSY--------EVSRALAA-CEGALLLIDAS--QGIEAQTVANFWKAVE-Q--DLVIIPVINKIDLPSADV-----D--- 143 (600)
T ss_dssp GHH--------HHHHHHHT-CSEEEEEEETT--TBCCHHHHHHHHHHHH-T--TCEEEEEEECTTSTTCCH-----H---
T ss_pred HHH--------HHHHHHHh-CCEEEEEEECC--CCccHHHHHHHHHHHH-C--CCCEEEEEeccCccccCH-----H---
Confidence 421 22333444 48999999998 5778888776655443 2 789999999999976431 1
Q ss_pred HHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 377 SEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 377 ~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.....+.........+++++||++|.|+++++++|.+.+...
T Consensus 144 ~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 144 RVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 111222222222223589999999999999999999988653
No 160
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.2e-14 Score=133.33 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=98.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC--chhhhHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR--DEDRNNLEKLTL 310 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~ie~~~~ 310 (435)
..+.+++++|++|+|||||+|++++..+ .+.+.+++|.... .+.+++ .+.++||||+.... ...+..+.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 4677899999999999999999998762 4456667776533 333444 67899999986421 111122222222
Q ss_pred HHHh--cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc
Q 037423 311 AVLT--HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM 388 (435)
Q Consensus 311 ~~l~--~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (435)
.++. ...+++++++|++. +.+..+.. +...+.. .+.|+++|.||+|+..... ..........+...
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~--~~~~~~~~-~~~~~~~--~~~~~~~v~nK~D~~s~~~-------~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRH--PLKDLDQQ-MIEWAVD--SNIAVLVLLTKADKLASGA-------RKAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTS--CCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCHHH-------HHHHHHHHHHHHGG
T ss_pred HHHHhhhcccEEEEEEECCC--CCchhHHH-HHHHHHH--cCCCeEEEEecccCCCchh-------HHHHHHHHHHHHHh
Confidence 2332 33478899999984 44444332 3333333 3789999999999875321 00101122222211
Q ss_pred --CCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 389 --GPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 389 --~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
....++++||+++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 12467899999999999999999988754
No 161
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=1.2e-16 Score=162.31 Aligned_cols=87 Identities=30% Similarity=0.473 Sum_probs=45.6
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe---------------------C---CceEEEEeCCCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL---------------------G---YQNFQITDTPGL 294 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~---------------------~---~~~~~liDTpG~ 294 (435)
+|+++|.||||||||+|++++....++++|+||++...+...+ + ...+.+|||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999988888889999999887775422 2 257899999999
Q ss_pred CCCCchhhhHHHHHHHHHHh--cCCcEEEEEEeCCCC
Q 037423 295 LQRRDEDRNNLEKLTLAVLT--HLPTAILFVHDLSGE 329 (435)
Q Consensus 295 ~~~~~~~~~~ie~~~~~~l~--~~~d~il~ViD~s~~ 329 (435)
....... +.+...++. ..+|++++|+|+++.
T Consensus 82 ~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 82 VPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -----------------CCCSSTTCSEEEEEEETTCC
T ss_pred ccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532211 112222222 235899999999853
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.60 E-value=4.7e-15 Score=154.46 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=97.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-------------------------------CccccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-------------------------------PEVCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-------------------------------~~v~~~~~tT~~~~~~~~~~~~~ 284 (435)
...+|+++|++|+|||||+++|++.. ......+++|.+.....+..++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 45789999999999999999997431 11223457788888888888889
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCC-----CCHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECG-----TSPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g-----~s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
.+.||||||+.+. .......+.. +|++++|+|++.... ...+... .+..+... ...|+|+|+||
T Consensus 112 ~~~iiDTPG~~~f--------~~~~~~~~~~-aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~~-~~~~iIvviNK 180 (483)
T 3p26_A 112 NFTIVDAPGHRDF--------VPNAIMGISQ-ADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSL-GIHNLIIAMNK 180 (483)
T ss_dssp EEEEECCCCCGGG--------HHHHHHHHTT-CSEEEEEEECCC------CCCCHHHHH-HHHHHHHT-TCCCEEEEEEC
T ss_pred eEEEEECCCcHHH--------HHHHHHhhhh-CCEEEEEEECCCCccccccchhhhHHH-HHHHHHHc-CCCcEEEEEEC
Confidence 9999999999542 2233444444 599999999984211 1223332 23333332 33579999999
Q ss_pred cCCCCCCCccccchhhhHHHHHHHhhhhc--CCCcEEEcccCCCCCHHH
Q 037423 360 CDLLQTSPVAYVTEDEDSEHLEMASYRKM--GPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~vSA~~g~GI~e 406 (435)
+|+.+.... ..++.......+...... ...+++++||++|.|+++
T Consensus 181 ~Dl~~~~~~--~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 181 MDNVDWSQQ--RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGGTTCHH--HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cCcccchHH--HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999864311 111111111111111111 135789999999999985
No 163
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.59 E-value=4e-15 Score=151.52 Aligned_cols=165 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC--------CCc-c--------ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG--------KPE-V--------CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRR 298 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~--------~~~-v--------~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~ 298 (435)
...+|+++|++|+|||||+++|++. .+. . ....+.|.+.....+..++..+.+|||||+.+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 4568999999999999999999862 110 0 113456777666666667789999999998642
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhH
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDS 377 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~ 377 (435)
.......+.. +|++++|+|++ .+...+... ++..+... +.| +++|+||+|+...... .+....
T Consensus 89 -------~~~~~~~~~~-aD~~ilVvda~--~g~~~qt~~-~l~~~~~~--~ip~iivviNK~Dl~~~~~~---~~~~~~ 152 (405)
T 2c78_A 89 -------IKNMITGAAQ-MDGAILVVSAA--DGPMPQTRE-HILLARQV--GVPYIVVFMNKVDMVDDPEL---LDLVEM 152 (405)
T ss_dssp -------HHHHHHHHTT-CSSEEEEEETT--TCCCHHHHH-HHHHHHHT--TCCCEEEEEECGGGCCCHHH---HHHHHH
T ss_pred -------HHHHHHHHHH-CCEEEEEEECC--CCCcHHHHH-HHHHHHHc--CCCEEEEEEECccccCcHHH---HHHHHH
Confidence 1223333443 58999999998 456666554 55555554 678 8999999999752110 111111
Q ss_pred HHHHHHhhhhc--CCCcEEEcccCCCCC------------------HHHHHHHHHHHHhc
Q 037423 378 EHLEMASYRKM--GPDGAIRVSVMNEEG------------------LNELKDRVYQMLVG 417 (435)
Q Consensus 378 ~~~~~~~~~~~--~~~~~i~vSA~~g~G------------------I~eL~~~i~~~l~~ 417 (435)
+...+...... ...+++++||++|.| +++|++.+.+.+..
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 11111111111 135899999999987 78888888877653
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.59 E-value=3.5e-15 Score=159.37 Aligned_cols=161 Identities=18% Similarity=0.127 Sum_probs=101.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCcccc-------------------------------CCceeeeeeEEEEEeCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCN-------------------------------YPFTTRGILMGHINLGY 283 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~-------------------------------~~~tT~~~~~~~~~~~~ 283 (435)
.+..+|+++|++|+|||||+++|++....+.. .+|+|.+.....+..++
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 45679999999999999999999865332211 25788888888888889
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCC---CCC--CHHHHHHHHHHHHHhcCCCcEEEEEe
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGE---CGT--SPSDQFTIYKEIKERFSDHIWLDVVS 358 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~---~g~--s~~~~~~l~~~l~~~~~~~piIvV~N 358 (435)
..+.||||||+.+. ...+...+ ..+|++++|+|++.. .++ ..+... .+..+... ...|+|+|+|
T Consensus 245 ~~~~iiDTPG~e~f--------~~~~~~~~-~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~l-gi~~iIVVvN 313 (611)
T 3izq_1 245 ANFTIVDAPGHRDF--------VPNAIMGI-SQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSL-GIHNLIIAMN 313 (611)
T ss_dssp CEEEEEECCSSSCH--------HHHHTTTS-SCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHTT-TCCEEEEEEE
T ss_pred ceEEEEECCCCccc--------HHHHHHHH-hhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHHc-CCCeEEEEEe
Confidence 99999999999642 11222222 336999999999841 111 122222 22223332 2356999999
Q ss_pred ccCCCCCCCccccchhhhHHHHHHHhhhhc--CCCcEEEcccCCCCCHHHHH
Q 037423 359 KCDLLQTSPVAYVTEDEDSEHLEMASYRKM--GPDGAIRVSVMNEEGLNELK 408 (435)
Q Consensus 359 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~vSA~~g~GI~eL~ 408 (435)
|+|+.+.... ..++.......+...... ...+++++||++|.||+++.
T Consensus 314 KiDl~~~~~~--~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~ 363 (611)
T 3izq_1 314 KMDNVDWSQQ--RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE 363 (611)
T ss_dssp CTTTTTTCHH--HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred cccccchhHH--HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence 9999863311 111111111111111111 13589999999999999763
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.59 E-value=1.3e-14 Score=149.02 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=96.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-----------ccccC----------------------CceeeeeeEEEEEeC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-----------EVCNY----------------------PFTTRGILMGHINLG 282 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-----------~v~~~----------------------~~tT~~~~~~~~~~~ 282 (435)
+..+|+++|++|+|||||+++|++... ..+.. .+.|.+.....+..+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 346899999999999999999975321 01112 234555555566667
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDL 362 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl 362 (435)
+..+.+|||||+.+.. ......+ ..+|++++|+|++ .+...+... ++..+... ...|+|+|+||+|+
T Consensus 103 ~~~~~iiDtpGh~~f~--------~~~~~~~-~~aD~~ilVvDa~--~g~~~qt~~-~l~~~~~~-~~~~iIvviNK~Dl 169 (434)
T 1zun_B 103 KRKFIIADTPGHEQYT--------RNMATGA-STCDLAIILVDAR--YGVQTQTRR-HSYIASLL-GIKHIVVAINKMDL 169 (434)
T ss_dssp SEEEEEEECCCSGGGH--------HHHHHHH-TTCSEEEEEEETT--TCSCHHHHH-HHHHHHHT-TCCEEEEEEECTTT
T ss_pred CceEEEEECCChHHHH--------HHHHHHH-hhCCEEEEEEECC--CCCcHHHHH-HHHHHHHc-CCCeEEEEEEcCcC
Confidence 8899999999985421 1222333 3459999999998 455555554 44444443 22469999999999
Q ss_pred CCCCCccccchhhhHHHHHHHhhhhcCC-----CcEEEcccCCCCCHHHH
Q 037423 363 LQTSPVAYVTEDEDSEHLEMASYRKMGP-----DGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~vSA~~g~GI~eL 407 (435)
.+.... ........+..+....+ .+++++||++|.|++++
T Consensus 170 ~~~~~~-----~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 170 NGFDER-----VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTSCHH-----HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcccHH-----HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 763210 01111122223322222 57999999999999984
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.58 E-value=6.9e-15 Score=156.39 Aligned_cols=168 Identities=17% Similarity=0.190 Sum_probs=103.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC------------------CceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG------------------YQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~------------------~~~~~liDTpG~~~~ 297 (435)
+.++|+++|++|+|||||++++++.........+.|.+.......+. ...+.+|||||+.+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 56899999999999999999998643211111133433322232211 125899999999765
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc---cc---
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVA---YV--- 371 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~---~~--- 371 (435)
..... . ....+|++++|+|++ .|...+... .+..+... +.|+++|+||+|+....... ..
T Consensus 84 ~~~~~--------r-~~~~aD~aILVvDa~--~Gv~~qT~e-~l~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~ 149 (594)
T 1g7s_A 84 TTLRK--------R-GGALADLAILIVDIN--EGFKPQTQE-ALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMET 149 (594)
T ss_dssp TTSBC--------S-SSBSCSEEEEEEETT--TCCCHHHHH-HHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred HHHHH--------H-HHhhCCEEEEEEECC--CCccHhHHH-HHHHHHHc--CCeEEEEecccccccccccccCCchHHH
Confidence 43211 1 123369999999998 567677665 34455553 78999999999997532110 00
Q ss_pred ----ch----hhhHHHHHHH-hhhh--------------cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 372 ----TE----DEDSEHLEMA-SYRK--------------MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 372 ----~~----~~~~~~~~~~-~~~~--------------~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.. .+......+. .+.. ....+++++||++|.|+++|+++|...+..
T Consensus 150 sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 00 0000000000 1111 122489999999999999999999988764
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.57 E-value=1.4e-14 Score=147.29 Aligned_cols=164 Identities=16% Similarity=0.056 Sum_probs=105.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-------Cc---------cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCch
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-------PE---------VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-------~~---------v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
..+|+++|++++|||||+++|++.. +. .....+.|.+.....+..++..+.+|||||+.+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f--- 79 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY--- 79 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH---
Confidence 3579999999999999999998531 10 1113466777665566667789999999998431
Q ss_pred hhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHHH
Q 037423 301 DRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSEH 379 (435)
Q Consensus 301 ~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~~ 379 (435)
.......+ ..+|++++|+|++ .+...+.... +..+... +.| +++|+||+|+...... .+....+.
T Consensus 80 -----~~~~~~~~-~~aD~~ilVvda~--~g~~~qt~e~-l~~~~~~--~vp~iivviNK~Dl~~~~~~---~~~~~~~~ 145 (397)
T 1d2e_A 80 -----VKNMITGT-APLDGCILVVAAN--DGPMPQTREH-LLLARQI--GVEHVVVYVNKADAVQDSEM---VELVELEI 145 (397)
T ss_dssp -----HHHHHHTS-SCCSEEEEEEETT--TCSCHHHHHH-HHHHHHT--TCCCEEEEEECGGGCSCHHH---HHHHHHHH
T ss_pred -----HHHHHhhH-hhCCEEEEEEECC--CCCCHHHHHH-HHHHHHc--CCCeEEEEEECcccCCCHHH---HHHHHHHH
Confidence 11222223 3469999999998 4566666553 3445443 678 7899999999752110 11111111
Q ss_pred HHHHhhhhc--CCCcEEEcccCCCCC----------HHHHHHHHHHHHhc
Q 037423 380 LEMASYRKM--GPDGAIRVSVMNEEG----------LNELKDRVYQMLVG 417 (435)
Q Consensus 380 ~~~~~~~~~--~~~~~i~vSA~~g~G----------I~eL~~~i~~~l~~ 417 (435)
..+...... ...+++++||++|.| +++|++.+.+.+..
T Consensus 146 ~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 146 RELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 111111111 135899999999774 89999999887754
No 168
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.57 E-value=2.4e-15 Score=163.09 Aligned_cols=174 Identities=20% Similarity=0.237 Sum_probs=108.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCce--------------eeeee-------------------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFT--------------TRGIL------------------------- 275 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~t--------------T~~~~------------------------- 275 (435)
+.++|+++|.+|+|||||+|+|++... .++..|+| |++..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 578999999999999999999998764 45555655 22110
Q ss_pred --------------EEEEEeCC----ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHH
Q 037423 276 --------------MGHINLGY----QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQ 337 (435)
Q Consensus 276 --------------~~~~~~~~----~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~ 337 (435)
...+.++. ..+.+|||||+.+... ....+..++.. +|++++|+|++ .+.+..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~-----~~~~~~~~i~~-aD~vL~Vvda~--~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA-----RNELSLGYVNN-CHAILFVMRAS--QPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT-----CHHHHTHHHHS-SSEEEEEEETT--STTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh-----HHHHHHHHHHh-CCEEEEEEeCC--CccchhHH
Confidence 00001111 4689999999864211 12334445555 49999999998 45667766
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccc-cchhhh---HHH-----HHHHhhhh-----cCCCcEEEcccC----
Q 037423 338 FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAY-VTEDED---SEH-----LEMASYRK-----MGPDGAIRVSVM---- 399 (435)
Q Consensus 338 ~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~-~~~~~~---~~~-----~~~~~~~~-----~~~~~~i~vSA~---- 399 (435)
..|...+... +.|+++|+||+|+........ ..++.. ... ..+..+.. ....++++|||+
T Consensus 220 ~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~ 297 (695)
T 2j69_A 220 RYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALR 297 (695)
T ss_dssp HHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHH
T ss_pred HHHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHH
Confidence 5454444443 679999999999875421100 000000 000 01112211 112479999999
Q ss_pred ----------CCCCHHHHHHHHHHHHhccc
Q 037423 400 ----------NEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 400 ----------~g~GI~eL~~~i~~~l~~~~ 419 (435)
+|.|++++++.+.+.+....
T Consensus 298 ~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 298 RRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp HHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred hhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998775543
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.57 E-value=9.7e-15 Score=134.81 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=85.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCcc---ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEV---CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v---~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
...++|+++|++|+|||||++++.+..+.. +..+.++.+. ....+.+|||||+.... ..+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~----~~~~~~~~~ 78 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR----YKLSDYLKT 78 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT----HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH----HHHHHHHHh
Confidence 456899999999999999999999765422 2222222222 45688999999995432 222222222
Q ss_pred HHhcCCcEEEEEEeCC-CCCCCCHHHHHHHHHHHHHh-----cCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhh
Q 037423 312 VLTHLPTAILFVHDLS-GECGTSPSDQFTIYKEIKER-----FSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASY 385 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s-~~~g~s~~~~~~l~~~l~~~-----~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 385 (435)
.. ..++++++|+|++ .. .+......++..+... ..+.|+++|+||+|+............+.. .+..+
T Consensus 79 ~~-~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~---~~~~~ 152 (218)
T 1nrj_B 79 RA-KFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES---EIQKV 152 (218)
T ss_dssp HG-GGEEEEEEEEETTSCT--TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH---HHHHH
T ss_pred cc-ccCCEEEEEEECCCCh--HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHH---HHHHH
Confidence 11 1248899999998 43 3344444455555442 147899999999999876532211111111 12222
Q ss_pred hhcCCCcEEEcccCCCCC
Q 037423 386 RKMGPDGAIRVSVMNEEG 403 (435)
Q Consensus 386 ~~~~~~~~i~vSA~~g~G 403 (435)
......+++++||++|.+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 153 IERRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHC--------
T ss_pred HHHHhccccccccccccc
Confidence 222224678888888764
No 170
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.55 E-value=2.6e-14 Score=154.74 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=110.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeee-----------------------------------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRG----------------------------------------- 273 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~----------------------------------------- 273 (435)
...|+|+++|.+|+|||||+|+|++..+.......+|+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 467899999999999999999999876521111122221
Q ss_pred ----------eeEEEEEe-CCceEEEEeCCCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHH
Q 037423 274 ----------ILMGHINL-GYQNFQITDTPGLLQRR-----DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQ 337 (435)
Q Consensus 274 ----------~~~~~~~~-~~~~~~liDTpG~~~~~-----~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~ 337 (435)
.....+.. +...+.|+||||+.... ......+......++...+|++++|+|++. +...++.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~--~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS--DLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTS--CSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCC--CcchhHH
Confidence 11112222 23468999999998743 122345566666777777799999999984 4555555
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh--hcCCCcEEEcccCCCCCHHHHHHHHHH
Q 037423 338 FTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR--KMGPDGAIRVSVMNEEGLNELKDRVYQ 413 (435)
Q Consensus 338 ~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~vSA~~g~GI~eL~~~i~~ 413 (435)
..++..+... +.|+|+|+||+|+.+..... ..... .... ..+..+++++||++|.|+++|++.+.+
T Consensus 207 l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~-------~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEVDPQ--GQRTIGVITKLDLMDEGTDA-------RDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHCTT--CSSEEEEEECTTSSCTTCCS-------HHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHHhc--CCCEEEEEeCcccCCcchhh-------HHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4466666654 78999999999998654221 01000 0010 012246789999999999999999987
No 171
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.55 E-value=1.9e-14 Score=144.19 Aligned_cols=166 Identities=20% Similarity=0.210 Sum_probs=98.2
Q ss_pred cCCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeee--------------------------------------
Q 037423 233 VDLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGI-------------------------------------- 274 (435)
Q Consensus 233 ~~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~-------------------------------------- 274 (435)
+....+.|+++|.+|+|||||+|++++..+.......+|+..
T Consensus 30 i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ 109 (360)
T 3t34_A 30 LWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQD 109 (360)
T ss_dssp --CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHH
Confidence 334667999999999999999999998654211111111110
Q ss_pred ----------------eEEEE-EeCCceEEEEeCCCCCCCC-----chhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCC
Q 037423 275 ----------------LMGHI-NLGYQNFQITDTPGLLQRR-----DEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGT 332 (435)
Q Consensus 275 ----------------~~~~~-~~~~~~~~liDTpG~~~~~-----~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~ 332 (435)
....+ ......+.+|||||+.+.. ......+...+..++.+ ++++++|+|++... .
T Consensus 110 ~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~-~d~iilvv~~~~~~-~ 187 (360)
T 3t34_A 110 ETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK-PNCIILAISPANQD-L 187 (360)
T ss_dssp HHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS-SSEEEEEEEETTSC-G
T ss_pred HHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc-CCeEEEEeecccCC-c
Confidence 01111 1124568999999998752 22333445555566655 48888999876432 1
Q ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHH
Q 037423 333 SPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRV 411 (435)
Q Consensus 333 s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i 411 (435)
...+...++..+.. .+.|+|+|+||+|+.+..... ......+......+++.+|+.++.|+++.++.+
T Consensus 188 ~~~~~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 188 ATSDAIKISREVDP--SGDRTFGVLTKIDLMDKGTDA---------VEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp GGCHHHHHHHHSCT--TCTTEEEEEECGGGCCTTCCS---------HHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred CCHHHHHHHHHhcc--cCCCEEEEEeCCccCCCcccH---------HHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 22222234444433 268999999999998654221 011122222234578999999988887765543
No 172
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.54 E-value=4.1e-14 Score=139.33 Aligned_cols=166 Identities=16% Similarity=0.131 Sum_probs=102.3
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCc-cccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPE-VCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLP 317 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~-v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~ 317 (435)
+|+++|..||||||+++.+.+.... .....+.|.+.....+. ...++++|||||+.+..... + ....+++. +
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~---l--~~~~yyr~-a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS---Y--DSERLFKS-V 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS---H--HHHHHHTT-C
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh---h--hhhhhccC-C
Confidence 5899999999999999987754321 11122344444444442 34789999999997653110 0 12233444 5
Q ss_pred cEEEEEEeCCCCCCCCHHHHH---HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc----CC
Q 037423 318 TAILFVHDLSGECGTSPSDQF---TIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM----GP 390 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~---~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 390 (435)
+++++|+|++++ ..+... .|+..+....++.|+++|+||+|+...+..... ...-......++++. .+
T Consensus 74 ~~~IlV~Ditd~---~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~--~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 74 GALVYVIDSQDE---YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDA--QRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp SEEEEECCCSSC---TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHH--HHHHHHHHHHTTSSSSCSCCC
T ss_pred CEEEEEEECCch---HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhH--HHHhhHHHHHHHHhhcccccC
Confidence 899999999854 223222 234445444568999999999999764311000 000111223344443 35
Q ss_pred CcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 391 DGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 391 ~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+++++||++ .+|.+.|..+.+.+..
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred ceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 6899999998 5899999988875543
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.52 E-value=3.9e-15 Score=158.52 Aligned_cols=162 Identities=17% Similarity=0.088 Sum_probs=82.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC-------------------------------CccccCCceeeeeeEEEEEeCCce
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK-------------------------------PEVCNYPFTTRGILMGHINLGYQN 285 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~-------------------------------~~v~~~~~tT~~~~~~~~~~~~~~ 285 (435)
..+|+++|++|+|||||+++|+... ......+++|.+.....+.+++..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~ 256 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeE
Confidence 3579999999999999999996311 011124678888888888888889
Q ss_pred EEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC---CC--CHHHHHHHHHHHHHhcCCCc-EEEEEec
Q 037423 286 FQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC---GT--SPSDQFTIYKEIKERFSDHI-WLDVVSK 359 (435)
Q Consensus 286 ~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~---g~--s~~~~~~l~~~l~~~~~~~p-iIvV~NK 359 (435)
+.||||||+.+..... ...+ ..+|++|+|+|++... |+ ..+... .+..+... +.| +|+|+||
T Consensus 257 i~iiDTPGh~~f~~~~--------~~~~-~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~l--gip~iIvviNK 324 (592)
T 3mca_A 257 YEIGDAPGHRDFISGM--------IAGA-SSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRAL--GISEIVVSVNK 324 (592)
T ss_dssp --CCEEESSSEEEEEC--------CC--------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHHS--SCCCEEEEEEC
T ss_pred EEEEECCChHHHHHHH--------HHHH-hhCCEEEEEEECCCCccccccccchHHHH-HHHHHHHc--CCCeEEEEEec
Confidence 9999999987543211 1112 2248899999998432 23 344443 23333443 565 9999999
Q ss_pred cCCCCCCCccccchhhhHHHHHHHhhh-hcC-----CCcEEEcccCCCCCHH--------------HHHHHHHHHH
Q 037423 360 CDLLQTSPVAYVTEDEDSEHLEMASYR-KMG-----PDGAIRVSVMNEEGLN--------------ELKDRVYQML 415 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~i~vSA~~g~GI~--------------eL~~~i~~~l 415 (435)
+|+...... ........+..+. ... ..+++++||++|.||+ .|++.|...+
T Consensus 325 iDl~~~~~~-----~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 325 LDLMSWSED-----RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp GGGGTTCHH-----HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cccccccHH-----HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 999763211 1111112222322 111 2379999999999998 6777776654
No 174
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.51 E-value=3.4e-14 Score=146.06 Aligned_cols=157 Identities=15% Similarity=0.053 Sum_probs=91.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC--CCc-----------------------------cccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG--KPE-----------------------------VCNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~--~~~-----------------------------v~~~~~tT~~~~~~~~~~~~~ 284 (435)
+..+|+++|++|+|||||+++|+.. .+. ....+++|.+.....+..++.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 3468999999999999999999753 110 001356788777777788888
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCC-------CCHHHHHHHHHHHHHhcCCCcEEEEE
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECG-------TSPSDQFTIYKEIKERFSDHIWLDVV 357 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g-------~s~~~~~~l~~~l~~~~~~~piIvV~ 357 (435)
.+.+|||||+.+.. ......+ ..+|++++|+|+++ + ...+... .+..+... .-.|+|+|+
T Consensus 85 ~~~iiDtpG~~~f~--------~~~~~~~-~~aD~~ilVvDa~~--gsfe~~~~~~~qt~~-~~~~~~~~-~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHRDFV--------KNMITGA-SQADAAILVVSAKK--GEYEAGMSVEGQTRE-HIILAKTM-GLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSSTTHH--------HHHHHTS-SCCSEEEEEEECST--THHHHHHSTTCHHHH-HHHHHHHT-TCTTCEEEE
T ss_pred EEEEEECCCcHHHH--------HHHHhhh-hhcCEEEEEEECCC--CccccccccchHHHH-HHHHHHHc-CCCeEEEEE
Confidence 99999999986531 1233333 34599999999984 3 2222222 22333332 224699999
Q ss_pred eccCCCCCCCccccchhhhHHHHHHHhhhhcC-----CCcEEEcccCCCCCHHHHH
Q 037423 358 SKCDLLQTSPVAYVTEDEDSEHLEMASYRKMG-----PDGAIRVSVMNEEGLNELK 408 (435)
Q Consensus 358 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~vSA~~g~GI~eL~ 408 (435)
||+|+.+........+.. ...+..+.... ..+++++||++|.|+.+++
T Consensus 152 NK~Dl~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEI---VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCHHHHHHH---HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccHHHHHHH---HHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999998632100001111 12222222211 2579999999999998554
No 175
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.51 E-value=1.4e-14 Score=149.98 Aligned_cols=155 Identities=12% Similarity=-0.006 Sum_probs=95.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC--Cc-----------------------c------ccCCceeeeeeEEEEEeCCce
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK--PE-----------------------V------CNYPFTTRGILMGHINLGYQN 285 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~--~~-----------------------v------~~~~~tT~~~~~~~~~~~~~~ 285 (435)
..+|+++|++|+|||||+++|++.. +. + ....+.|.+.....+..++..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4679999999999999999997531 10 0 012567888777778888889
Q ss_pred EEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCH-------HHHHHHHHHHHHhcCCCc-EEEEE
Q 037423 286 FQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSP-------SDQFTIYKEIKERFSDHI-WLDVV 357 (435)
Q Consensus 286 ~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~-------~~~~~l~~~l~~~~~~~p-iIvV~ 357 (435)
+.+|||||+.+. .......+ ..+|++++|+|++. +... +... .+..+... +.| +|+|+
T Consensus 87 ~~iiDtPGh~~f--------~~~~~~~~-~~aD~~ilVvda~~--g~~~~sf~~~~qt~~-~~~~~~~~--~v~~iivvi 152 (458)
T 1f60_A 87 VTVIDAPGHRDF--------IKNMITGT-SQADCAILIIAGGV--GEFEAGISKDGQTRE-HALLAFTL--GVRQLIVAV 152 (458)
T ss_dssp EEEEECCCCTTH--------HHHHHHSS-SCCSEEEEEEECSH--HHHHHHTCTTSHHHH-HHHHHHHT--TCCEEEEEE
T ss_pred EEEEECCCcHHH--------HHHHHhhh-hhCCEEEEEEeCCc--CccccccCcchhHHH-HHHHHHHc--CCCeEEEEE
Confidence 999999998542 12223333 34599999999983 2211 3333 23333332 555 99999
Q ss_pred eccCCCCCCCccccchhhhHHHHHHHhhhhc--CCCcEEEcccCCCCCHHHH
Q 037423 358 SKCDLLQTSPVAYVTEDEDSEHLEMASYRKM--GPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 358 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~vSA~~g~GI~eL 407 (435)
||+|+...... ..+....+...+...... ...+++++||++|.|++++
T Consensus 153 NK~Dl~~~~~~--~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 153 NKMDSVKWDES--RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp ECGGGGTTCHH--HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EccccccCCHH--HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99999742210 011111111111111111 1258999999999999754
No 176
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.50 E-value=2.1e-13 Score=143.32 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=79.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc----------------cc------cCCceeeeeeEEEEEeCCceEEEEeCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE----------------VC------NYPFTTRGILMGHINLGYQNFQITDTPG 293 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~----------------v~------~~~~tT~~~~~~~~~~~~~~~~liDTpG 293 (435)
+..+|+++|++|+|||||+++|+..... +. ...+.|.......+.+++..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3468999999999999999999853110 11 1334555555667778889999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 294 LLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 294 ~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
+.+... ....++.. +|++++|+|++ .+...+... ++..+... +.|+++|+||+|+....
T Consensus 92 ~~df~~--------~~~~~l~~-aD~~IlVvDa~--~g~~~~t~~-~~~~~~~~--~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFSE--------DTYRTLTA-VDCCLMVIDAA--KGVEDRTRK-LMEVTRLR--DTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCCH--------HHHHGGGG-CSEEEEEEETT--TCSCHHHHH-HHHHHTTT--TCCEEEEEECTTSCCSC
T ss_pred ChhHHH--------HHHHHHHH-CCEEEEEEeCC--ccchHHHHH-HHHHHHHc--CCCEEEEEcCcCCcccc
Confidence 976432 13334444 59999999998 455555543 44444433 78999999999997653
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=5.7e-14 Score=140.93 Aligned_cols=169 Identities=17% Similarity=0.119 Sum_probs=81.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccC-C------ceeeeee--EEEEEeCCc--eEEEEeCCCCCCCCch----
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNY-P------FTTRGIL--MGHINLGYQ--NFQITDTPGLLQRRDE---- 300 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~-~------~tT~~~~--~~~~~~~~~--~~~liDTpG~~~~~~~---- 300 (435)
..++|+++|++|+|||||+++|++.......+ + ..|.... ...+..++. .+.+|||||+.+....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 34679999999999999999987654322221 1 1232222 222233333 6899999999543211
Q ss_pred --hhhHHHHHHHHHHhcC------------CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 301 --DRNNLEKLTLAVLTHL------------PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 301 --~~~~ie~~~~~~l~~~------------~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
....++.....++... .++++|+++.+. .++...+.. ++..+. .+.|+|+|+||+|+....
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~-~~l~~~d~~-~~~~l~---~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVA-FMKAIH---NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSS-SSCCHHHHH-HHHHTC---S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCC-CCcchhHHH-HHHHhc---cCCCEEEEEECCCCCCHH
Confidence 1112222211222211 146888887643 345555542 454442 478999999999997543
Q ss_pred CccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 367 PVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+.......+..+....+.+++++||++|.| ++.+..+.+.+.+
T Consensus 191 -------ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 191 -------ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -------HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 111111234445555567899999999998 7777776666543
No 178
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=8.8e-15 Score=146.21 Aligned_cols=155 Identities=18% Similarity=0.131 Sum_probs=88.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC------CCc-cccCC-------------------------------------ce
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG------KPE-VCNYP-------------------------------------FT 270 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~------~~~-v~~~~-------------------------------------~t 270 (435)
...+.|+++|+||+|||||+|.+++. +.. ....| ++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 35788999999999999999999851 111 11111 11
Q ss_pred eeeeeEE--EEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Q 037423 271 TRGILMG--HINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF 348 (435)
Q Consensus 271 T~~~~~~--~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~ 348 (435)
|++.... .+..++..+.++||||+.... ..+....|++++|+|++. +...+.. .. ..
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~------------~~l~~~~d~vl~V~d~~~--~~~~~~i---~~---~i- 210 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE------------FAVADMVDMFVLLLPPAG--GDELQGI---KR---GI- 210 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH------------HHHHTTCSEEEEEECCC---------------------
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh------------hhHHhhCCEEEEEEcCCc--chhHHHh---HH---HH-
Confidence 2111000 011356788999999985321 112334589999999873 3211111 11 11
Q ss_pred CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhh-------hcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 349 SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYR-------KMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 349 ~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
...|.++|+||+|+.... ........+.... .....+++++||++|+|+++|+++|.+.+..
T Consensus 211 l~~~~ivVlNK~Dl~~~~-------~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 211 IEMADLVAVTKSDGDLIV-------PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CCSCSEEEECCCSGGGHH-------HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEeeecCCCch-------hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 256889999999986321 0000111111100 0113478999999999999999999998754
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.49 E-value=1.4e-13 Score=153.34 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=101.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC-----C-----------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK-----P-----------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~-----~-----------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+..+|+++|++++|||||+++|++.. . ......+.|.+.....+..++..+.+|||||+.+.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH--
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH--
Confidence 44689999999999999999998531 0 01123456666655556667789999999998531
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEeccCCCCCCCccccchhhhHH
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVSKCDLLQTSPVAYVTEDEDSE 378 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~NK~Dl~~~~~~~~~~~~~~~~ 378 (435)
.......+ ..+|++++|+|++ .+...+... ++..+... +.| +|+|+||+|+.+.... .+....+
T Consensus 373 ------~~~mi~ga-s~AD~aILVVDAt--dGv~~QTrE-hL~ll~~l--gIP~IIVVINKiDLv~d~e~---le~i~eE 437 (1289)
T 3avx_A 373 ------VKNMITGA-AQMDGAILVVAAT--DGPMPQTRE-HILLGRQV--GVPYIIVFLNKCDMVDDEEL---LELVEME 437 (1289)
T ss_dssp ------HHHHHHTS-CCCSEEEEEEETT--TCSCTTHHH-HHHHHHHH--TCSCEEEEEECCTTCCCHHH---HHHHHHH
T ss_pred ------HHHHHHHH-hhCCEEEEEEcCC--ccCcHHHHH-HHHHHHHc--CCCeEEEEEeecccccchhh---HHHHHHH
Confidence 12222223 3459999999998 455555554 44555554 678 8999999999752210 0111111
Q ss_pred HHHHHhhhhc--CCCcEEEcccCCC--------CCHHHHHHHHHHHHh
Q 037423 379 HLEMASYRKM--GPDGAIRVSVMNE--------EGLNELKDRVYQMLV 416 (435)
Q Consensus 379 ~~~~~~~~~~--~~~~~i~vSA~~g--------~GI~eL~~~i~~~l~ 416 (435)
...+...... ...+++++||++| .|+++|++.|.+.+.
T Consensus 438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 1111111111 1368999999999 578999999887664
No 180
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.48 E-value=3.2e-14 Score=147.50 Aligned_cols=161 Identities=12% Similarity=-0.015 Sum_probs=86.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC--Cc-----------------------c------ccCCceeeeeeEEEEEeCCc
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK--PE-----------------------V------CNYPFTTRGILMGHINLGYQ 284 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~--~~-----------------------v------~~~~~tT~~~~~~~~~~~~~ 284 (435)
+..+|+++|++++|||||+++|+... +. + ....+.|.+.....+.+++.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 45689999999999999999986311 10 0 11245677766666777888
Q ss_pred eEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC---CCC--HHHHHHHHHHHHHhcCCCc-EEEEEe
Q 037423 285 NFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC---GTS--PSDQFTIYKEIKERFSDHI-WLDVVS 358 (435)
Q Consensus 285 ~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~---g~s--~~~~~~l~~~l~~~~~~~p-iIvV~N 358 (435)
.+.+|||||+.+... .....+ ..+|++++|+|++... ++. .+... .+..+... +.| +|+|+|
T Consensus 122 ~~~iiDtPGh~~f~~--------~~~~~~-~~aD~~ilVvDa~~g~~e~sf~~~~qt~e-~l~~~~~~--~vp~iivviN 189 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT--------NMINGA-SQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ--GINHLVVVIN 189 (467)
T ss_dssp EEEECCCCC-------------------T-TSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT--TCSSEEEEEE
T ss_pred EEEEEECCCcHHHHH--------HHHhhc-ccCCEEEEEEeCCcCccccccCCCCcHHH-HHHHHHHc--CCCEEEEEEE
Confidence 999999999865321 122222 3459999999998431 111 12222 22223332 677 999999
Q ss_pred ccCCCCCCCccccchhhhHHHHHHHhhh-hcC---CCcEEEcccCCCCCHHHHH
Q 037423 359 KCDLLQTSPVAYVTEDEDSEHLEMASYR-KMG---PDGAIRVSVMNEEGLNELK 408 (435)
Q Consensus 359 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~i~vSA~~g~GI~eL~ 408 (435)
|+|+..........+....+...+.... ... ..+++++||++|.|+++++
T Consensus 190 K~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 190 KMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 9999653211001111111111111111 111 3579999999999998755
No 181
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.48 E-value=2.7e-14 Score=142.91 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=92.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC------CCC-ccccCCceee-------------------eeeE------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST------GKP-EVCNYPFTTR-------------------GILM------------ 276 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~------~~~-~v~~~~~tT~-------------------~~~~------------ 276 (435)
...+.|+++|.+|+|||||++.|+. .++ .+...|.++. ....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 3567899999999999999999862 121 1111111111 0000
Q ss_pred --------EEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Q 037423 277 --------GHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF 348 (435)
Q Consensus 277 --------~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~ 348 (435)
..+...+..++||||||+... ...+...+|++++|+|++.. ...+... ...
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------------~~~~~~~aD~vl~V~d~~~~--~~~~~l~-------~~~ 215 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS------------EVAVANMVDTFVLLTLARTG--DQLQGIK-------KGV 215 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH------------HHHHHTTCSEEEEEEESSTT--CTTTTCC-------TTS
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH------------HHHHHHhCCEEEEEECCCCC--ccHHHHH-------HhH
Confidence 001224678999999997531 11223556999999998732 2221111 111
Q ss_pred CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh----cCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 349 SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK----MGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 349 ~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.+.|+++|+||+|+...... ............... ....+++++||++|+|+++|+++|.+.+..
T Consensus 216 ~~~p~ivVlNK~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 216 LELADIVVVNKADGEHHKEA----RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGGCSEEEEECCCGGGHHHH----HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCCcChhHH----HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 24699999999998643211 011111111111111 113589999999999999999999998765
No 182
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.48 E-value=2.8e-13 Score=146.78 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=81.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC--CC----------cccc------CCceeeeeeEEEEEeCCceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG--KP----------EVCN------YPFTTRGILMGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~--~~----------~v~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 297 (435)
+.++|+++|++|+|||||+++|+.. .. .+.+ .+++|.......+.+++..+.+|||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 3568999999999999999999831 11 1111 3466777777778888899999999999765
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
... ...++.. +|++++|+|++ .+.+.++... +..+... +.|+++|+||+|+...
T Consensus 89 ~~~--------~~~~l~~-aD~~llVvDa~--~g~~~~~~~~-~~~~~~~--~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 TVE--------VERSLRV-LDGAVTVLDAQ--SGVEPQTETV-WRQATTY--GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CHH--------HHHHHHH-CSEEEEEEETT--TBSCHHHHHH-HHHHHHT--TCCEEEEEECTTSTTC
T ss_pred HHH--------HHHHHHH-CCEEEEEECCC--CCCcHHHHHH-HHHHHHc--CCCEEEEEECCCcccc
Confidence 321 2334444 48999999998 5677777664 4455554 7999999999999764
No 183
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=8.3e-14 Score=125.78 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=74.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCcc---ccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHH
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEV---CNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLA 311 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v---~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~ 311 (435)
...++|+++|.+|+|||||++++++..+.. +..+.++.+ +.+..+.+|||||........ ......
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~~----~~~~~~ 114 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYKL----SDYLKT 114 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------CCCTTCSEEEETTCCBSSCCH----HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------ecCCeEEEEECCCCchHHHHH----HHHHHh
Confidence 456799999999999999999999765422 222223222 256788999999987653321 122222
Q ss_pred HHhcCCcEEEEEEeCC-CCCCCCHHHHHHHHHHHHHh-----cCCCcEEEEEeccCCCCCC
Q 037423 312 VLTHLPTAILFVHDLS-GECGTSPSDQFTIYKEIKER-----FSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s-~~~g~s~~~~~~l~~~l~~~-----~~~~piIvV~NK~Dl~~~~ 366 (435)
.+ ..++++++|+|++ +. .+......|+..+... ..+.|+++|+||+|+....
T Consensus 115 ~~-~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 115 RA-KFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HG-GGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred hc-ccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 22 2248899999987 22 2334444455554432 1378999999999998765
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.47 E-value=4.1e-13 Score=145.48 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=79.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC--C----c------ccc------CCceeeeeeEEEEEeCCceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK--P----E------VCN------YPFTTRGILMGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~--~----~------v~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 297 (435)
+.++|+++|++|+|||||+++|+... . . +.+ ..+.|.......+.+++..+.+|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 35689999999999999999997310 0 0 111 3456666667777888899999999999763
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
.. ....++.. +|++++|+|++ .+.+.+....| ..+... +.|+++|+||+|+...
T Consensus 91 ~~--------~~~~~l~~-aD~~ilVvDa~--~g~~~~t~~~~-~~~~~~--~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 TI--------EVERSMRV-LDGAIVVFDSS--QGVEPQSETVW-RQAEKY--KVPRIAFANKMDKTGA 144 (691)
T ss_dssp HH--------HHHHHHHH-CSEEEEEEETT--TCSCHHHHHHH-HHHHHT--TCCEEEEEECTTSTTC
T ss_pred HH--------HHHHHHHH-CCEEEEEEECC--CCcchhhHHHH-HHHHHc--CCCEEEEEECCCcccC
Confidence 21 23334444 48999999998 56777776644 445553 7999999999999764
No 185
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.46 E-value=5.1e-13 Score=133.52 Aligned_cols=90 Identities=28% Similarity=0.345 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCC-----------------ceEEEEeCCCCCCCCc
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGY-----------------QNFQITDTPGLLQRRD 299 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~~~~ 299 (435)
+.+++++|.||+|||||+|++++..+.++++|++|.+...+.+.+++ ..+.+|||||+.+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 35799999999999999999999888889999999998888777765 4699999999986532
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCC
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSG 328 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~ 328 (435)
..+. +.......++. +|++++|+|+++
T Consensus 82 ~~~g-l~~~fl~~ir~-ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEG-LGNKFLANIRE-TDAIGHVVRCFE 108 (363)
T ss_dssp HHGG-GTCCHHHHHHT-CSEEEEEEECSC
T ss_pred ccch-HHHHHHHHHHh-cCeEEEEEecCC
Confidence 2111 11111223444 489999999985
No 186
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.45 E-value=9.1e-13 Score=139.02 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=84.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhCCC----------------------CccccCCceeeeeeEEEEEeCCceEEEEeCCCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTGK----------------------PEVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~~----------------------~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 294 (435)
-+.++++|+.++|||||..+|+... .......+.|.......+.|++..+.||||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 4679999999999999999986110 011223456666677788999999999999999
Q ss_pred CCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 295 LQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 295 ~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.+...+ ...++.-+ |++++|+|+. .|...+....| +.+.+. +.|.++++||+|....+
T Consensus 111 vDF~~E--------v~raL~~~-DgAvlVvda~--~GV~~qT~~v~-~~a~~~--~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 111 QDFSED--------TYRVLTAV-DSALVVIDAA--KGVEAQTRKLM-DVCRMR--ATPVMTFVNKMDREALH 168 (548)
T ss_dssp GGCSHH--------HHHHHHSC-SEEEEEEETT--TBSCHHHHHHH-HHHHHT--TCCEEEEEECTTSCCCC
T ss_pred HHHHHH--------HHHHHHhc-CceEEEeecC--CCcccccHHHH-HHHHHh--CCceEEEEecccchhcc
Confidence 987643 33344443 8899999998 78889888744 555554 89999999999986543
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.44 E-value=1.8e-12 Score=140.60 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC--C----cc------cc------CCceeeeeeEEEEEeCC-------ceEEEEe
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK--P----EV------CN------YPFTTRGILMGHINLGY-------QNFQITD 290 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~--~----~v------~~------~~~tT~~~~~~~~~~~~-------~~~~liD 290 (435)
+.++|+++|+.|+|||||+++|+... . .+ .+ ..+.|.......+.+++ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999996421 0 01 11 23455555555666666 7899999
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 291 TPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 291 TpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
|||+.+... ....++.. +|++++|+|++ .+...+.... +..+... +.|+++|+||+|+...
T Consensus 89 TPG~~df~~--------~~~~~l~~-aD~aIlVvDa~--~gv~~qt~~~-~~~~~~~--~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDFTI--------EVERSMRV-LDGAVMVYCAV--GGVQPQSETV-WRQANKY--KVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccchHH--------HHHHHHHH-CCEEEEEEeCC--CCCcHHHHHH-HHHHHHc--CCCEEEEEeCCCcccc
Confidence 999976421 22333433 48999999998 5666666553 3444443 7899999999998754
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.43 E-value=1.5e-12 Score=140.61 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=80.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc------c------cc------CCceeeeeeEEEEEeCCceEEEEeCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE------V------CN------YPFTTRGILMGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~------v------~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~ 297 (435)
++.+++++|++|+|||||+++|++.... + .+ ..+.|.......+.+++..+.+|||||+.+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4678999999999999999999832110 0 01 1234555555666777889999999998653
Q ss_pred CchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 298 RDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 298 ~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
. .....++.. .|++++|+|++ .+...+... ++..+... +.|+++|+||+|+.
T Consensus 88 ~--------~~~~~~l~~-ad~~ilVvD~~--~g~~~qt~~-~~~~~~~~--~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 V--------GEIRGALEA-ADAALVAVSAE--AGVQVGTER-AWTVAERL--GLPRMVVVTKLDKG 139 (665)
T ss_dssp H--------HHHHHHHHH-CSEEEEEEETT--TCSCHHHHH-HHHHHHHT--TCCEEEEEECGGGC
T ss_pred H--------HHHHHHHhh-cCcEEEEEcCC--cccchhHHH-HHHHHHHc--cCCEEEEecCCchh
Confidence 2 123334443 48899999987 567766664 55556554 79999999999987
No 189
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.38 E-value=2.2e-12 Score=129.47 Aligned_cols=89 Identities=28% Similarity=0.400 Sum_probs=66.0
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeC---------------------CceEEEEeCCCCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLG---------------------YQNFQITDTPGLLQ 296 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~---------------------~~~~~liDTpG~~~ 296 (435)
.+++++|.||+|||||+|++++..+.++++|++|.+...+...+. +..+.+|||||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 468999999999999999999876677889999988887776543 34689999999987
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCC
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSG 328 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~ 328 (435)
....... +.......+.. +|++++|+|+++
T Consensus 82 ~a~~~~~-lg~~fl~~ir~-ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEG-LGNQFLAHIRE-VAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSC-TTHHHHHHHHT-CSEEEEEEECCC
T ss_pred cccccch-HHHHHHHHHHh-CCEEEEEEECCC
Confidence 5432111 11122333444 489999999985
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.38 E-value=2.5e-13 Score=135.17 Aligned_cols=157 Identities=15% Similarity=0.137 Sum_probs=89.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC------CCC-ccccCCceeee-------------------eeEEE----------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST------GKP-EVCNYPFTTRG-------------------ILMGH---------- 278 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~------~~~-~v~~~~~tT~~-------------------~~~~~---------- 278 (435)
.++..++++|++|+||||+++.+++ .+. .+...+++|.. .....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 3577899999999999999999863 222 22222332220 00000
Q ss_pred ----------EEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Q 037423 279 ----------INLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF 348 (435)
Q Consensus 279 ----------~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~ 348 (435)
..+++..+.||||||+.+.. . .+...+|++++|+|++. +...+... ....
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----~--------~~~~~aD~vl~Vvd~~~--~~~~~~l~---~~~~--- 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE----T--------EVARMVDCFISLQIAGG--GDDLQGIK---KGLM--- 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH----H--------HHHTTCSEEEEEECC--------CCCC---HHHH---
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH----H--------HHHHhCCEEEEEEeCCc--cHHHHHHH---Hhhh---
Confidence 01346789999999986421 1 12345699999999873 21111110 0111
Q ss_pred CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhc----CCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 349 SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKM----GPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 349 ~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+.|.++|+||+|+...... ................ ...+++++||++|.|+++|+++|.+.+.
T Consensus 194 -~~p~ivv~NK~Dl~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 -EVADLIVINKDDGDNHTNV----AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp -HHCSEEEECCCCTTCHHHH----HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred -cccCEEEEECCCCCChHHH----HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3588999999998753210 0000011111111110 1347899999999999999999998765
No 191
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.37 E-value=1.7e-12 Score=127.03 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=80.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC-CCccccCC------ceeeee--eEEEEEeC--CceEEEEeCCCCCCCC-----
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG-KPEVCNYP------FTTRGI--LMGHINLG--YQNFQITDTPGLLQRR----- 298 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~-~~~v~~~~------~tT~~~--~~~~~~~~--~~~~~liDTpG~~~~~----- 298 (435)
.-.++|+++|++|+|||||++.|++. .+..+..+ ..|... ....+... ...+.+|||||+....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34578999999999999999998865 22222111 012111 11111112 2468999999984321
Q ss_pred -chhhhHHHHHHHHHHhcC------------CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 299 -DEDRNNLEKLTLAVLTHL------------PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 299 -~~~~~~ie~~~~~~l~~~------------~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
......+.......+... .++++|+.+++. .++...+. .++..+. .+.|+++|+||+|+...
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~-~~l~~l~---~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV-AFMKAIH---NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH-HHHHHHT---TTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH-HHHHHHH---hcCCEEEEEEeCCCCCH
Confidence 111111222211222211 134666666542 24555553 2344332 35799999999999753
Q ss_pred CCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 366 SPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
. +.......+..+....+.+++++||++| |+++++..+.+.+..
T Consensus 171 ~-------e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 K-------ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred H-------HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 2 1111122333444444578999999999 999999999988754
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.30 E-value=2.2e-12 Score=119.22 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=90.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCC------CccccCCceeee--------eeEEEE------------------EeCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGK------PEVCNYPFTTRG--------ILMGHI------------------NLGY 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~------~~v~~~~~tT~~--------~~~~~~------------------~~~~ 283 (435)
..+.++++|.+|+|||||+++|++.. ..+...++++.+ .....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 35689999999999999999997531 112222232211 000111 1134
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..+.+|||+|....+.. +...++.+++|+|++. +.. ....+. ... +.|+++|+||+|+.
T Consensus 109 ~d~iiidt~G~~~~~~~------------~~~~~~~~i~vvd~~~--~~~--~~~~~~---~~~--~~~~iiv~NK~Dl~ 167 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD------------FDLGENYRVVMVSVTE--GDD--VVEKHP---EIF--RVADLIVINKVALA 167 (221)
T ss_dssp CSEEEEEEEEBSSGGGG------------CCCSCSEEEEEEEGGG--CTT--HHHHCH---HHH--HTCSEEEEECGGGH
T ss_pred CCEEEEeCCCCCCCCch------------hccccCcEEEEEeCCC--cch--hhhhhh---hhh--hcCCEEEEecccCC
Confidence 57889999996332211 1112467899999884 321 111111 111 47899999999986
Q ss_pred CCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 364 QTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
..... +.......+... ....+++++||++|.|++++++++.+.+..+.
T Consensus 168 ~~~~~-----~~~~~~~~~~~~--~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 168 EAVGA-----DVEKMKADAKLI--NPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHTC-----CHHHHHHHHHHH--CTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred cchhh-----HHHHHHHHHHHh--CCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 42100 011111111111 12357999999999999999999999876543
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.29 E-value=7.4e-12 Score=132.16 Aligned_cols=126 Identities=18% Similarity=0.239 Sum_probs=81.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC---ccccCCceeeeeeEEEE---------------------------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP---EVCNYPFTTRGILMGHI--------------------------------- 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~---~v~~~~~tT~~~~~~~~--------------------------------- 279 (435)
..+.|+++|.+|+|||||+|+|++..+ .++..|.|++.....+-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 468999999999999999999998875 46777776543211110
Q ss_pred ---EeCC---ceEEEEeCCCCCCCCchhhhH---HHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCC
Q 037423 280 ---NLGY---QNFQITDTPGLLQRRDEDRNN---LEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSD 350 (435)
Q Consensus 280 ---~~~~---~~~~liDTpG~~~~~~~~~~~---ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~ 350 (435)
.+.+ ..+.||||||+.+......+. +...+..++... |++++|+|++.. +...++. .++..+... +
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~a-D~il~VvDa~~~-~~~~~~~-~~l~~l~~~--~ 218 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERV-DLIILLFDAHKL-EISDEFS-EAIGALRGH--E 218 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHC-SEEEEEEETTSC-CCCHHHH-HHHHHTTTC--G
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhC-CEEEEEEeCCcC-CCCHHHH-HHHHHHHhc--C
Confidence 0000 368999999997632111010 223344444444 899999999742 3444444 366666543 6
Q ss_pred CcEEEEEeccCCCCCC
Q 037423 351 HIWLDVVSKCDLLQTS 366 (435)
Q Consensus 351 ~piIvV~NK~Dl~~~~ 366 (435)
.|+++|+||+|+....
T Consensus 219 ~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQ 234 (550)
T ss_dssp GGEEEEEECGGGSCHH
T ss_pred CCEEEEEECCCccCHH
Confidence 8999999999998643
No 194
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=125.86 Aligned_cols=169 Identities=20% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCCccccC-------Cceee-eeeEEEEEeCC--ceEEEEeCCCCCCCCchh--h
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKPEVCNY-------PFTTR-GILMGHINLGY--QNFQITDTPGLLQRRDED--R 302 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~-------~~tT~-~~~~~~~~~~~--~~~~liDTpG~~~~~~~~--~ 302 (435)
.-.++|+++|++|+|||||+|.|++........ +.++. ......+...+ ..+.+|||||+....... .
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 345679999999999999999999765421111 11111 11111111122 367999999997542110 0
Q ss_pred hH----HHHHHHHHH----------hcCC--cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 303 NN----LEKLTLAVL----------THLP--TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 303 ~~----ie~~~~~~l----------~~~~--d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
.. +.......+ ...+ ++++|++++++ .++...+.. |+..+.. +.|+|+|+||+|+....
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~-~lk~L~~---~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIE-FMKRLHE---KVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHH-HHHHHTT---TSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHH-HHHHHhc---cCcEEEEEEcccCccHH
Confidence 11 111111111 1112 34566555542 356666643 6666653 68999999999997643
Q ss_pred CccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHH
Q 037423 367 PVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
. .......+..+....+.+++++||+++.++++++..+.+.+
T Consensus 184 e-------v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 E-------CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp H-------HHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred H-------HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 1 11111223333333356889999999999999888777654
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.28 E-value=3.3e-12 Score=137.17 Aligned_cols=168 Identities=11% Similarity=0.104 Sum_probs=111.5
Q ss_pred CEEEEecCCCCChhhHHHHhhC---C-----CC----cccc------CCceeeeeeEEEEEeCCceEEEEeCCCCCCCCc
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST---G-----KP----EVCN------YPFTTRGILMGHINLGYQNFQITDTPGLLQRRD 299 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~---~-----~~----~v~~------~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~ 299 (435)
+.|+++|+.++|||||..+|+. . .. .+.+ ..|.|.......+.|++..+.|+||||+.+...
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4589999999999999999862 1 00 0111 114555555666788899999999999998643
Q ss_pred hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccc--cc-----
Q 037423 300 EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAY--VT----- 372 (435)
Q Consensus 300 ~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~--~~----- 372 (435)
+ ...++.- .|++++|+|+. .|...+... ++..+.+. +.|.|+++||+|....+.... ..
T Consensus 83 E--------v~raL~~-~DgavlVVDa~--~GV~~qT~~-v~~~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 83 E--------VYRSLSV-LDGAILLISAK--DGVQAQTRI-LFHALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp H--------HHHHHTT-CSEEECCEESS--CTTCSHHHH-HHHHHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred H--------HHHHHHH-hCEEEEEEeCC--CCCcHHHHH-HHHHHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence 2 3334443 48999999998 788888876 44555555 789999999999765431100 00
Q ss_pred ----------------------hhhhH-------H-----------------HHHHHhhhhcCCCcEEEcccCCCCCHHH
Q 037423 373 ----------------------EDEDS-------E-----------------HLEMASYRKMGPDGAIRVSVMNEEGLNE 406 (435)
Q Consensus 373 ----------------------~~~~~-------~-----------------~~~~~~~~~~~~~~~i~vSA~~g~GI~e 406 (435)
.+... . ......+......|++..||+++.||+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~ 228 (638)
T 3j25_A 149 AEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN 228 (638)
T ss_dssp CCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH
T ss_pred CCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchh
Confidence 00000 0 0000011222345889999999999999
Q ss_pred HHHHHHHHHhccc
Q 037423 407 LKDRVYQMLVGQM 419 (435)
Q Consensus 407 L~~~i~~~l~~~~ 419 (435)
|++.+.+.+....
T Consensus 229 LLd~i~~~~p~p~ 241 (638)
T 3j25_A 229 LIEVITNKFYSST 241 (638)
T ss_dssp HHHHHHHSCCCSG
T ss_pred HhhhhhccccCcc
Confidence 9999998776543
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.26 E-value=5.3e-12 Score=119.87 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=69.0
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHH----HHHHHhcCCCcEEEEEec
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIY----KEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~----~~l~~~~~~~piIvV~NK 359 (435)
..+++|||||..+... .+.+.......+ .. +++++++|++ ...+..+..... ..... .+.|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~~~--~~~l~~~~~~~~-~~-~~iv~vvD~~--~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFL--FHEFGVRLMENL-PY-PLVVYISDPE--ILKKPNDYCFVRFFALLIDLR--LGATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHHHH--HSHHHHHHHHTS-SS-CEEEEEECGG--GCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECC
T ss_pred CCEEEEeCCCccchhh--hhhhHHHHHHHH-hh-ceEEeccchh--hhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEec
Confidence 4789999999854211 011111111223 22 7889999986 334444433221 11122 26899999999
Q ss_pred cCCCCCCCccccchhhhHHHH----HH--------------Hh-hhhc-CCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 360 CDLLQTSPVAYVTEDEDSEHL----EM--------------AS-YRKM-GPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~----~~--------------~~-~~~~-~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
+|+....... ...+...+.. .+ .+ .... ...+++++||++|+|+++++++|.+.+..
T Consensus 181 ~D~~~~~~~~-~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 181 VDLLSEEEKE-RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GGGCCHHHHH-HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccccHH-HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 9987542110 0001000000 00 00 0111 22378999999999999999999998764
No 197
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=2.1e-11 Score=121.07 Aligned_cols=158 Identities=19% Similarity=0.135 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC------CCCc-cccCCceeee-----------------eeEEE------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST------GKPE-VCNYPFTTRG-----------------ILMGH------------ 278 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~------~~~~-v~~~~~tT~~-----------------~~~~~------------ 278 (435)
.++..++++|++|+|||||++.+++ .+.. .+..+.++.. .....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~ 132 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV 132 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccch
Confidence 3577899999999999999999973 3321 1111111110 00000
Q ss_pred ----------EEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Q 037423 279 ----------INLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF 348 (435)
Q Consensus 279 ----------~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~ 348 (435)
+..++..++|+||||+..... .+....|++++|+|++. +...+. +...+.
T Consensus 133 tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~--~~~~~~---i~~~i~--- 192 (337)
T 2qm8_A 133 AAKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGA--GDELQG---IKKGIF--- 192 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC-----------CCTTHH---
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCC--cccHHH---HHHHHh---
Confidence 123578899999999975310 12244589999999762 211110 111111
Q ss_pred CCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhh----cCCCcEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 349 SDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRK----MGPDGAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 349 ~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
..+.++|+||+|+....... ............... ....+++.+||++|.|+++|++.|.+.+.
T Consensus 193 -~~~~ivvlNK~Dl~~~~~~s---~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 193 -ELADMIAVNKADDGDGERRA---SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -HHCSEEEEECCSTTCCHHHH---HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -ccccEEEEEchhccCchhHH---HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23567888999976432100 000011111111111 01347899999999999999999999775
No 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.19 E-value=4.1e-13 Score=135.00 Aligned_cols=146 Identities=16% Similarity=0.220 Sum_probs=91.1
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCC-------CCccccCCceeeeeeEE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTG-------KPEVCNYPFTTRGILMG 277 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~-------~~~v~~~~~tT~~~~~~ 277 (435)
.+..+++..+.++++|.+....+. .+.+++++|.+|+|||||+|+|++. ...++..|+||++....
T Consensus 135 ~v~~iSA~~g~gi~~L~~~l~~~~-------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~ 207 (368)
T 3h2y_A 135 DVFLISAAKGQGIAELADAIEYYR-------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDI 207 (368)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH-------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEE
T ss_pred cEEEEeCCCCcCHHHHHhhhhhhc-------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEE
Confidence 456788999999999988654432 2467999999999999999999864 34578999999987765
Q ss_pred EEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH--hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 037423 278 HINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL--THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLD 355 (435)
Q Consensus 278 ~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l--~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIv 355 (435)
.+ + ..+.++||||+.+..... +.+.......+ ....+.++|++|+... ....+.. .+..+.. .+.|+++
T Consensus 208 ~~--~-~~~~liDtPG~~~~~~~~-~~l~~~~l~~~~~~~~i~~~~~~l~~~~~--~~~g~l~-~~d~l~~--~~~~~~~ 278 (368)
T 3h2y_A 208 PL--D-EESSLYDTPGIINHHQMA-HYVGKQSLKLITPTKEIKPMVFQLNEEQT--LFFSGLA-RFDYVSG--GRRAFTC 278 (368)
T ss_dssp ES--S-SSCEEEECCCBCCTTSGG-GGSCHHHHHHHSCSSCCCCEEEEECTTEE--EEETTTE-EEEEEES--SSEEEEE
T ss_pred Ee--c-CCeEEEeCCCcCcHHHHH-HHhhHHHHHHhccccccCceEEEEcCCCE--EEEcceE-EEEEecC--CCceEEE
Confidence 43 2 237899999998754211 11111112221 2234678999987311 0001111 1111222 2679999
Q ss_pred EEeccCCCCCC
Q 037423 356 VVSKCDLLQTS 366 (435)
Q Consensus 356 V~NK~Dl~~~~ 366 (435)
|+||+|.....
T Consensus 279 v~nk~d~~~~~ 289 (368)
T 3h2y_A 279 HFSNRLTIHRT 289 (368)
T ss_dssp EECTTSCEEEE
T ss_pred EecCccccccc
Confidence 99999988654
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.19 E-value=2.4e-11 Score=112.57 Aligned_cols=155 Identities=13% Similarity=0.069 Sum_probs=84.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCc------cccCCceeee--------eeEEEEEe--------------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPE------VCNYPFTTRG--------ILMGHINL-------------------- 281 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~------v~~~~~tT~~--------~~~~~~~~-------------------- 281 (435)
+.++|+++|.+|+|||||+++++...+. +...++++.+ .....+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4678999999999999999999854221 1111111100 01111110
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
.+..+.++||+|...... .+....+.++.++|+.......... . .. . +.|.++|+||+|
T Consensus 117 ~~~d~~~id~~g~i~~~~------------s~~~~~~~~~~v~~~~~~~~~~~~~-~----~~--~--~~~~iiv~NK~D 175 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA------------DFDLGTHKRIVVISTTEGDDTIEKH-P----GI--M--KTADLIVINKID 175 (226)
T ss_dssp GGCSEEEEECCSCSSGGG------------GCCCSCSEEEEEEEGGGCTTTTTTC-H----HH--H--TTCSEEEEECGG
T ss_pred CCCCEEEEeCCCCccCcc------------hhhhccCcEEEEEecCcchhhHhhh-h----hH--h--hcCCEEEEeccc
Confidence 012577788887532211 0112235567777754211111111 0 11 1 578999999999
Q ss_pred CCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 362 LLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 362 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
+...... ........+..+ ....+++++||++|.|++++++++.+.+..+
T Consensus 176 l~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 176 LADAVGA-----DIKKMENDAKRI--NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp GHHHHTC-----CHHHHHHHHHHH--CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred cCchhHH-----HHHHHHHHHHHh--CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 8642100 000111111111 1235899999999999999999999887543
No 200
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=1.4e-10 Score=117.17 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=71.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCC-----------------ceEEEEeCCCCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGY-----------------QNFQITDTPGLLQ 296 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~-----------------~~~~liDTpG~~~ 296 (435)
..+.+++++|+||+|||||+|.|++... .++++|+||.++..+.+.+.+ ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 3578999999999999999999999877 899999999999999888876 3579999999876
Q ss_pred CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCC
Q 037423 297 RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSG 328 (435)
Q Consensus 297 ~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~ 328 (435)
..... +.+.......+.. .|++++|+|+++
T Consensus 98 ~~s~~-e~L~~~fl~~ir~-~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTG-VGLGNAFLSHVRA-VDAIYQVVRAFD 127 (392)
T ss_dssp CCCSS-SSSCHHHHHHHTT-CSEEEEEEECCC
T ss_pred CCcHH-HHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 54321 1121122334444 488999999875
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.18 E-value=4.1e-10 Score=122.42 Aligned_cols=115 Identities=13% Similarity=0.020 Sum_probs=76.7
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC--------CC----------ccccCCceeeeeeEEEEEeC-------CceEEEEeC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG--------KP----------EVCNYPFTTRGILMGHINLG-------YQNFQITDT 291 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~--------~~----------~v~~~~~tT~~~~~~~~~~~-------~~~~~liDT 291 (435)
-+.|+++|+.++|||||..+|+.. +. ......+.|.......+.|. +..+.||||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 357999999999999999988621 10 01112344544444555553 467999999
Q ss_pred CCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 037423 292 PGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQT 365 (435)
Q Consensus 292 pG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~ 365 (435)
||+.+...+ ...+++- .|++++|+|+. .|...+....| +.+.+. +.|.++|+||+|....
T Consensus 93 PGHvDF~~E--------v~~aLr~-~DgavlvVDav--eGV~~qT~~v~-~~a~~~--~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 93 PGHVDFTIE--------VERSLRV-LDGAVVVFCGT--SGVEPQSETVW-RQANKY--GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CSCTTCHHH--------HHHHHHH-CSEEEEEEETT--TCSCHHHHHHH-HHHHHH--TCCEEEEEECSSSTTC
T ss_pred CCCcccHHH--------HHHHHHH-hCeEEEEEECC--CCCchhHHHHH-HHHHHc--CCCeEEEEccccccCc
Confidence 999987543 2233333 38899999998 78989888744 444444 7999999999997643
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.17 E-value=5.4e-13 Score=134.20 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=96.3
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCC------CCccccCCceeeeeeEEE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTG------KPEVCNYPFTTRGILMGH 278 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~------~~~v~~~~~tT~~~~~~~ 278 (435)
.+..+++..+.++..|.+....+. .+..++++|.+|+|||||+|+|++. ...+++.|+||++.....
T Consensus 137 ~v~~iSA~~g~gi~~L~~~I~~~~-------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~ 209 (369)
T 3ec1_A 137 DVCLVSAAKGIGMAKVMEAINRYR-------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP 209 (369)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHH-------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc-------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE
Confidence 456788999999999988654432 2467999999999999999999875 567889999999876554
Q ss_pred EEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH--hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 037423 279 INLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL--THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDV 356 (435)
Q Consensus 279 ~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l--~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV 356 (435)
+ + ..+.++||||+....... ..+.......+ ....++++|++|+.... ...+.. .+..+.. .+.|+++|
T Consensus 210 ~--~-~~~~liDtPG~~~~~~~~-~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~--~~g~l~-~l~~l~~--~~~~~~~v 280 (369)
T 3ec1_A 210 L--E-SGATLYDTPGIINHHQMA-HFVDARDLKIITPKREIHPRVYQLNEGQTL--FFGGLA-RLDYIKG--GRRSFVCY 280 (369)
T ss_dssp C--S-TTCEEEECCSCCCCSSGG-GGSCTTTHHHHSCSSCCCCEEEEECTTEEE--EETTTE-EEEEEES--SSEEEEEE
T ss_pred e--C-CCeEEEeCCCcCcHHHHH-HHHhHHHHHHHhcccccCceEEEEcCCceE--EECCEE-EEEEccC--CCceEEEE
Confidence 3 2 347899999998654211 11111112222 12347899999974210 000111 0111222 36799999
Q ss_pred EeccCCCCCC
Q 037423 357 VSKCDLLQTS 366 (435)
Q Consensus 357 ~NK~Dl~~~~ 366 (435)
+||+|.....
T Consensus 281 ~~k~d~~~~~ 290 (369)
T 3ec1_A 281 MANELTVHRT 290 (369)
T ss_dssp ECTTSCEEEE
T ss_pred ecCCcccccc
Confidence 9999987654
No 203
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.17 E-value=2.5e-11 Score=134.21 Aligned_cols=115 Identities=15% Similarity=0.052 Sum_probs=77.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC-cc---------------ccCCceeeeeeEEEEEeC----------------C
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP-EV---------------CNYPFTTRGILMGHINLG----------------Y 283 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~-~v---------------~~~~~tT~~~~~~~~~~~----------------~ 283 (435)
..++|+++|++|+|||||+++|+.... .. ....+.|.......+.+. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 346899999999999999999975311 10 012234444333344443 5
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLL 363 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~ 363 (435)
..+.+|||||+.+... ....++.. +|++++|+|++ .+.+.++...|.. +... +.|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df~~--------~~~~~l~~-aD~ailVvDa~--~g~~~qt~~~~~~-~~~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS--------EVTAALRV-TDGALVVVDTI--EGVCVQTETVLRQ-ALGE--RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSSCH--------HHHHHHHT-CSEEEEEEETT--TBSCHHHHHHHHH-HHHT--TCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhhHH--------HHHHHHHh-CCEEEEEEeCC--CCCCHHHHHHHHH-HHHc--CCCeEEEEECCCcc
Confidence 6789999999987542 23334444 48999999998 5677887764443 3333 78999999999986
Q ss_pred C
Q 037423 364 Q 364 (435)
Q Consensus 364 ~ 364 (435)
.
T Consensus 164 ~ 164 (842)
T 1n0u_A 164 L 164 (842)
T ss_dssp H
T ss_pred h
Confidence 3
No 204
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.00 E-value=5.7e-10 Score=116.12 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=94.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhh------CCCC-ccccC---Cce--------ee-eeeEEE-----------------E
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS------TGKP-EVCNY---PFT--------TR-GILMGH-----------------I 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~------~~~~-~v~~~---~~t--------T~-~~~~~~-----------------~ 279 (435)
+...|+++|.+|+||||+++.|+ +.++ .++.- +.. +. .+.... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998 4443 11110 000 00 010000 0
Q ss_pred EeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcE-EEEEe
Q 037423 280 NLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIW-LDVVS 358 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~pi-IvV~N 358 (435)
...+..++||||||.........+.+..... ++ .+|.+++|+|++. +..... ....+.+. .|+ ++|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~-~i--~pd~vllVvDa~~--g~~~~~---~a~~~~~~---~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVAN-AI--QPDNIVYVMDASI--GQACEA---QAKAFKDK---VDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHH-HH--CCSEEEEEEETTC--CTTHHH---HHHHHHHH---HCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHh-hh--cCceEEEEEeccc--cccHHH---HHHHHHhh---cCceEEEEe
Confidence 1156789999999997643222222222221 12 4688999999983 443222 23334332 464 79999
Q ss_pred ccCCCCCCCccccchhhhHHHHHHH----------hhhh-cCCCcEEEcccCCCCC-HHHHHHHHHHHHh----cccccc
Q 037423 359 KCDLLQTSPVAYVTEDEDSEHLEMA----------SYRK-MGPDGAIRVSVMNEEG-LNELKDRVYQMLV----GQMDRI 422 (435)
Q Consensus 359 K~Dl~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~i~vSA~~g~G-I~eL~~~i~~~l~----~~~~~~ 422 (435)
|+|........ ........ .+.. ....+.+++|++.|.| +++|++++.+... +...++
T Consensus 249 K~D~~~~~g~~------l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~ 322 (504)
T 2j37_W 249 KLDGHAKGGGA------LSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKL 322 (504)
T ss_dssp CTTSCCCCTHH------HHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSC
T ss_pred CCccccchHHH------HHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987443110 00000000 0000 0112456789999999 9999999987722 333455
Q ss_pred cCC
Q 037423 423 KSR 425 (435)
Q Consensus 423 ~t~ 425 (435)
.++
T Consensus 323 ~~g 325 (504)
T 2j37_W 323 KHG 325 (504)
T ss_dssp TTS
T ss_pred hcC
Confidence 554
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.00 E-value=6.4e-10 Score=112.20 Aligned_cols=92 Identities=21% Similarity=0.361 Sum_probs=52.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCc-----------------eEEEEeCCCCCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQ-----------------NFQITDTPGLLQRR 298 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~-----------------~~~liDTpG~~~~~ 298 (435)
.+.+++++|.||+|||||+|++++..+.++++|++|.++..+.+.+.+. .+++|||||+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 5678999999999999999999998888899999999999888877542 48999999997644
Q ss_pred chhhhHHHHHHHHHHhcCCcEEEEEEeCCCC
Q 037423 299 DEDRNNLEKLTLAVLTHLPTAILFVHDLSGE 329 (435)
Q Consensus 299 ~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~ 329 (435)
... ..+.......+.. +|++++|+|+++.
T Consensus 101 s~~-~glg~~~l~~ir~-aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNG-QGLGNAFLSHISA-CDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHT-SSSEEEEEEC---
T ss_pred chh-hHHHHHHHHHHHh-cCeEEEEEecCCC
Confidence 321 1111122334444 4889999999853
No 206
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.88 E-value=3.4e-09 Score=102.56 Aligned_cols=93 Identities=22% Similarity=0.345 Sum_probs=56.2
Q ss_pred hhHHHHhhcCCChhHHHHHHHHh-ccC------CccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCceeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTL-RAM------PVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPFTTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l-~~l------p~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~tT~~~~~ 276 (435)
....+++.++.++..|.+....+ ... ........+++++|.||||||||+|++.+.. ..+++.|++|++...
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~ 160 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW 160 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC
T ss_pred cEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE
Confidence 44457778888888877643322 100 0112356789999999999999999999876 588999999998764
Q ss_pred EEEEeCCceEEEEeCCCCCCCCch
Q 037423 277 GHINLGYQNFQITDTPGLLQRRDE 300 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~~~~~ 300 (435)
..+ +..+.++||||+......
T Consensus 161 ~~~---~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 161 VKV---GKELELLDTPGILWPKFE 181 (282)
T ss_dssp EEE---TTTEEEEECCCCCCSCCC
T ss_pred EEe---CCCEEEEECcCcCCCCCC
Confidence 332 457899999999876443
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.85 E-value=1.4e-08 Score=103.26 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=69.6
Q ss_pred CCCE--EEEecCCCCChhhHHHHhhCCCCc----cccCCceeeeeeEEEEEeCC--ceEEEEeCCCCCCCCchh------
Q 037423 236 ETPT--LCLVGAPNVGKSSLVRVISTGKPE----VCNYPFTTRGILMGHINLGY--QNFQITDTPGLLQRRDED------ 301 (435)
Q Consensus 236 ~~~~--v~~~G~~~~GKssl~~~l~~~~~~----v~~~~~tT~~~~~~~~~~~~--~~~~liDTpG~~~~~~~~------ 301 (435)
.+.. ++++|++|+|||||+|.|++.... ....++.+...........+ ..+.++||+|+.......
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i 118 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPI 118 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHH
Confidence 4556 999999999999999999886431 11123334332222222222 267999999997643211
Q ss_pred hhHHHHHHHHHHhc----------CC----c-EEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 302 RNNLEKLTLAVLTH----------LP----T-AILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 302 ~~~ie~~~~~~l~~----------~~----d-~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
...+......++.. .. | +++|+.|+. .+.+..|.. +++.+. .+.|+|+|+||+|.....
T Consensus 119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~--~~l~~~Die-ilk~L~---~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTG--HSLKSLDLV-TMKKLD---SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHH-HHHHTC---SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCC--CCCCHHHHH-HHHHHh---hCCCEEEEEcchhccchH
Confidence 01122222122111 01 2 356666655 567777754 555554 378999999999988654
No 208
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.83 E-value=3.7e-09 Score=105.47 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=87.6
Q ss_pred eeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC--------CCCHHHHHHHH
Q 037423 270 TTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC--------GTSPSDQFTIY 341 (435)
Q Consensus 270 tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~--------g~s~~~~~~l~ 341 (435)
.|.++....+.+++..+.+|||+|...... ....++. ..+++|||+|+++.+ ..+..+...|+
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~--------~w~~yf~-~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~ 249 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERK--------KWIHCFE-GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLF 249 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGG--------GGGGGCT-TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHH
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhH--------HHHHHHh-cCCEEEEEEECccccccccccchhhhHHHHHHHH
Confidence 355566677778889999999999864321 1222333 358999999999521 12355556677
Q ss_pred HHHHH--hcCCCcEEEEEeccCCCCCCC----ccccc------hhhhHHHHHHH----hhh---hcCCCcEEEcccCCCC
Q 037423 342 KEIKE--RFSDHIWLDVVSKCDLLQTSP----VAYVT------EDEDSEHLEMA----SYR---KMGPDGAIRVSVMNEE 402 (435)
Q Consensus 342 ~~l~~--~~~~~piIvV~NK~Dl~~~~~----~~~~~------~~~~~~~~~~~----~~~---~~~~~~~i~vSA~~g~ 402 (435)
..+.. .+.+.|+|+|+||+|+..... ....+ .........+. ... ......++++||++|.
T Consensus 250 ~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~ 329 (353)
T 1cip_A 250 DSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK 329 (353)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH
T ss_pred HHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch
Confidence 77765 246799999999999853210 00000 00000001111 110 1234578999999999
Q ss_pred CHHHHHHHHHHHHhcc
Q 037423 403 GLNELKDRVYQMLVGQ 418 (435)
Q Consensus 403 GI~eL~~~i~~~l~~~ 418 (435)
||+++|+++.+.+...
T Consensus 330 nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 330 NVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999987543
No 209
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.80 E-value=4e-09 Score=102.88 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=82.9
Q ss_pred hHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCC
Q 037423 252 SLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECG 331 (435)
Q Consensus 252 sl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g 331 (435)
+++.++....+....+..|.-+.....+..+ ..+++||| +.....- ...++.+ .|++++|+|++++ .
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~-~~~~iwD~--qer~~~l--------~~~~~~~-ad~vilV~D~~~~-~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDET-GSGVIENV--LHRKNLL--------TKPHVAN-VDQVILVVTVKMP-E 98 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCS-SSEEEEEE--CCCSCEE--------TTTTEES-CCEEEEEECSSTT-C
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCC-CeEEEEEE--cccccee--------ecccccc-CCEEEEEEeCCCC-C
Confidence 5676666655531233333333333222222 37899999 3322211 1123333 5999999999853 2
Q ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHH
Q 037423 332 TSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRV 411 (435)
Q Consensus 332 ~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i 411 (435)
.+......|+..+.. .+.|+++|+||+|+.+.... .+...+....... .+++++||++|.|++++++.+
T Consensus 99 ~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v--------~~~~~~~~~~~~~-~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 99 TSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDL--------RKVRELEEIYSGL-YPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp CCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHH--------HHHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhH--------HHHHHHHHHHhhh-CcEEEEECCCCcCHHHHHHHh
Confidence 256666678877765 37999999999999753210 1111122222211 589999999999999999877
Q ss_pred HH
Q 037423 412 YQ 413 (435)
Q Consensus 412 ~~ 413 (435)
..
T Consensus 168 ~g 169 (301)
T 1u0l_A 168 KG 169 (301)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 210
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.79 E-value=3e-09 Score=106.43 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=83.2
Q ss_pred eeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCC--------CCCHHHHHHHHH
Q 037423 271 TRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGEC--------GTSPSDQFTIYK 342 (435)
Q Consensus 271 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~--------g~s~~~~~~l~~ 342 (435)
|.++....+.+++..+.+|||+|...... ....++. ..+++|||+|+++.+ ..+..+...|+.
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~--------~w~~~f~-~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~ 258 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERK--------RWFECFD-SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFE 258 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC---------------CTTSCT-TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhh--------hHHHHhC-CCCEEEEEEECccccccccccccccHHHHHHHHHH
Confidence 45555666777889999999999954321 1222233 358999999999521 224556666777
Q ss_pred HHHHh--cCCCcEEEEEeccCCCCCC----Cccccc-------hhhhHHHHHH----Hhhhh---cCCCcEEEcccCCCC
Q 037423 343 EIKER--FSDHIWLDVVSKCDLLQTS----PVAYVT-------EDEDSEHLEM----ASYRK---MGPDGAIRVSVMNEE 402 (435)
Q Consensus 343 ~l~~~--~~~~piIvV~NK~Dl~~~~----~~~~~~-------~~~~~~~~~~----~~~~~---~~~~~~i~vSA~~g~ 402 (435)
.+... +.+.|+|+|+||+|+.... .....+ .........+ ..... .....++++||++|.
T Consensus 259 ~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~ 338 (362)
T 1zcb_A 259 TIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE 338 (362)
T ss_dssp HHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred HHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch
Confidence 77653 4679999999999986321 000000 0000110111 11111 224578899999999
Q ss_pred CHHHHHHHHHHHHhcc
Q 037423 403 GLNELKDRVYQMLVGQ 418 (435)
Q Consensus 403 GI~eL~~~i~~~l~~~ 418 (435)
||+++|+++.+.+...
T Consensus 339 nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 339 NIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999887543
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.73 E-value=1.7e-07 Score=95.80 Aligned_cols=145 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhh------CCCCc-cccCCce------------eeeeeEEE-----------------E
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS------TGKPE-VCNYPFT------------TRGILMGH-----------------I 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~------~~~~~-v~~~~~t------------T~~~~~~~-----------------~ 279 (435)
++..++++|.+|+||||++..|+ +.++. +..-++. ..+..... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999887 22221 1100000 00000000 0
Q ss_pred EeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Q 037423 280 NLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSK 359 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK 359 (435)
...+..++||||||..........++..+ .... .++.+++|+|++ .|. +.......+.+. -.+..+|+||
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i--~~~~-~pd~vlLVvDA~--~gq---~a~~~a~~f~~~--~~i~gVIlTK 248 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQI--SNVI-HPHEVILVIDGT--IGQ---QAYNQALAFKEA--TPIGSIIVTK 248 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHH--HHHH-CCSEEEEEEEGG--GGG---GHHHHHHHHHHS--CTTEEEEEEC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHH--HHhh-cCceEEEEEeCC--Cch---hHHHHHHHHHhh--CCCeEEEEEC
Confidence 01346899999999876443322222222 1222 358899999988 333 222334445443 3456799999
Q ss_pred cCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHH
Q 037423 360 CDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLN 405 (435)
Q Consensus 360 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~ 405 (435)
+|..... ..........+.|+.++++ |++++
T Consensus 249 lD~~~~g-------------G~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 249 LDGSAKG-------------GGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp CSSCSSH-------------HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred CCCcccc-------------cHHHHHHHHHCCCEEEEEc--CCChH
Confidence 9986432 1122222234568888886 66543
No 212
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.70 E-value=2.1e-08 Score=106.14 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=64.5
Q ss_pred CCCCCEEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEe-------CCceEEEEeCCCCCCCCc-hhhhHH
Q 037423 234 DLETPTLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINL-------GYQNFQITDTPGLLQRRD-EDRNNL 305 (435)
Q Consensus 234 ~~~~~~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~-------~~~~~~liDTpG~~~~~~-~~~~~i 305 (435)
+.+...|+++|.||+|||||+|+|++..... +.++||++...+.+.+ .+..+.++||||+.+... ......
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH
Confidence 3456789999999999999999999876432 5566665555444432 467899999999987543 233444
Q ss_pred HHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHH
Q 037423 306 EKLTLAVLTHLPTAILFVHDLSGECGTSPSDQF 338 (435)
Q Consensus 306 e~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~ 338 (435)
+.++...+.. + ++|+|++ .+++.++..
T Consensus 114 ~~fala~lls--s--~lv~n~~--~~i~~~dl~ 140 (592)
T 1f5n_A 114 WIFALAVLLS--S--TFVYNSI--GTINQQAMD 140 (592)
T ss_dssp HHHHHHHHHC--S--EEEEEEE--SCSSHHHHH
T ss_pred HHHHHHHHhc--C--eEEEECC--CCccHHHHH
Confidence 5554444332 2 4556766 346666654
No 213
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=2.2e-07 Score=94.32 Aligned_cols=173 Identities=16% Similarity=0.037 Sum_probs=93.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC------ccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHH
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP------EVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLT 309 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~------~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~ 309 (435)
....++++|++|+|||||+|.+++-.. .... ..+|+....... .....+.++|+||+........+.++..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~- 144 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKM- 144 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHT-
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHc-
Confidence 456899999999999999999997321 1111 112322221111 1123689999999864321111112211
Q ss_pred HHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc--cccchhhhHHHHHHHhhh-
Q 037423 310 LAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV--AYVTEDEDSEHLEMASYR- 386 (435)
Q Consensus 310 ~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~- 386 (435)
.+.+. +.+++ ++.. . ...++.. +...+... ++|+++|.||.|+.--++. .............+..+.
T Consensus 145 --~L~~~-~~~~~-lS~G--~-~~kqrv~-la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 145 --KFYEY-DFFII-ISAT--R-FKKNDID-IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCV 214 (413)
T ss_dssp --TGGGC-SEEEE-EESS--C-CCHHHHH-HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHH
T ss_pred --CCCcc-CCeEE-eCCC--C-ccHHHHH-HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHH
Confidence 22332 33443 5643 1 2344443 56666664 7899999999997511000 000000011111122221
Q ss_pred ----hc--CCCcEEEccc--CCCCCHHHHHHHHHHHHhccccc
Q 037423 387 ----KM--GPDGAIRVSV--MNEEGLNELKDRVYQMLVGQMDR 421 (435)
Q Consensus 387 ----~~--~~~~~i~vSA--~~g~GI~eL~~~i~~~l~~~~~~ 421 (435)
+. ....++.+|+ ..+.|++++.+.+.+.+++....
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 11 1246899999 66778999999999998776543
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.66 E-value=4.6e-08 Score=98.96 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=86.4
Q ss_pred eeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCC--------CCCCHHHHHHHHH
Q 037423 271 TRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGE--------CGTSPSDQFTIYK 342 (435)
Q Consensus 271 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~--------~g~s~~~~~~l~~ 342 (435)
|.++....+.+++..+.+|||+|...... ....++. .+++++||+|+++- ...++++...|+.
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~--------~w~~yf~-~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~ 274 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERR--------KWIQCFN-DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFK 274 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGG--------GGGGGTT-TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHH
T ss_pred eeeeEEEEeecCCccceecccchhhhhhh--------hhHhhcc-CCCEEEEEEECcccccccccccccchHHHHHHHHH
Confidence 44444556777888999999999964321 1222333 35899999999951 0345666667888
Q ss_pred HHHHh--cCCCcEEEEEeccCCCCCCC---c---cccchhh------------------hHHHHHH--Hhhhh-------
Q 037423 343 EIKER--FSDHIWLDVVSKCDLLQTSP---V---AYVTEDE------------------DSEHLEM--ASYRK------- 387 (435)
Q Consensus 343 ~l~~~--~~~~piIvV~NK~Dl~~~~~---~---~~~~~~~------------------~~~~~~~--~~~~~------- 387 (435)
.+... +.+.|+++|+||+|+..... . ...+.+. ......+ ..|..
T Consensus 275 ~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~ 354 (402)
T 1azs_C 275 SIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGD 354 (402)
T ss_dssp HHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccc
Confidence 88753 46789999999999853211 0 0000000 0111111 11111
Q ss_pred -cCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 388 -MGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 388 -~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.....++++||+++.||+++|+.+.+.+...
T Consensus 355 ~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 355 GRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp TSSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccEEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 1234567999999999999999998877543
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.65 E-value=7.2e-08 Score=92.58 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=70.8
Q ss_pred CEEEEecCCCCChhhHHHHhhCCCCc------cc--cCCceeeeeeEEEEEe-C--CceEEEEeCCCCCCCCchh--hhH
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGKPE------VC--NYPFTTRGILMGHINL-G--YQNFQITDTPGLLQRRDED--RNN 304 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~~~------v~--~~~~tT~~~~~~~~~~-~--~~~~~liDTpG~~~~~~~~--~~~ 304 (435)
++++++|++|+|||||+|.|++.... .. +.+.++.....+.+.- . ...+.++|+||+....... ...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 57999999999999999999863211 10 1122221111111111 1 1367899999986543211 112
Q ss_pred HHHHH----HH----HHhcC---------CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCC
Q 037423 305 LEKLT----LA----VLTHL---------PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTS 366 (435)
Q Consensus 305 ie~~~----~~----~l~~~---------~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~ 366 (435)
+.... .. .+... ++++++++|... .|.+..+.. ++..+.+ ..++|+|+||+|.....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~-~gL~~lD~~-~l~~L~~---~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTG-HSLRPLDLE-FMKHLSK---VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCS-SSCCHHHHH-HHHHHHT---TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCC-CcCCHHHHH-HHHHHHh---cCcEEEEEeccccCCHH
Confidence 22211 11 11110 267889999664 477777754 6666765 38999999999988654
No 216
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.58 E-value=3.6e-08 Score=98.33 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=74.9
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCC--------CCCCCHHHHHHHHHHHHHh--cCCCc
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSG--------ECGTSPSDQFTIYKEIKER--FSDHI 352 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~--------~~g~s~~~~~~l~~~l~~~--~~~~p 352 (435)
...+.+|||+|...... ....++ ...+++++|+|+++ ....+.++...|+..+... +.+.|
T Consensus 182 ~v~l~iwDtaGQe~~r~--------~~~~y~-~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~p 252 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERR--------KWIHLF-EGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTS 252 (354)
T ss_dssp --EEEEEEECCSTTGGG--------GTGGGC-TTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCE
T ss_pred ceeeEEEECCCchhhhH--------HHHHHh-CCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCe
Confidence 46789999999965332 122222 33488999999871 1123455666677777653 46789
Q ss_pred EEEEEeccCCCCCCCccc------cchhhh------HHHHHHHhh-----hh-----------cCCCcEEEcccCCCCCH
Q 037423 353 WLDVVSKCDLLQTSPVAY------VTEDED------SEHLEMASY-----RK-----------MGPDGAIRVSVMNEEGL 404 (435)
Q Consensus 353 iIvV~NK~Dl~~~~~~~~------~~~~~~------~~~~~~~~~-----~~-----------~~~~~~i~vSA~~g~GI 404 (435)
+++|+||+|+........ .+.+.. ........+ .. .....++++||+++.||
T Consensus 253 iiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV 332 (354)
T 2xtz_A 253 FMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLV 332 (354)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHH
T ss_pred EEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhH
Confidence 999999999853211000 000000 001111111 10 11234689999999999
Q ss_pred HHHHHHHHHHHhc
Q 037423 405 NELKDRVYQMLVG 417 (435)
Q Consensus 405 ~eL~~~i~~~l~~ 417 (435)
+++|+++.+.+..
T Consensus 333 ~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 333 KKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.57 E-value=1.8e-08 Score=103.09 Aligned_cols=158 Identities=22% Similarity=0.195 Sum_probs=85.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhC------CCCc-cc------------------------cCCceeeeeeE----EEEEe
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST------GKPE-VC------------------------NYPFTTRGILM----GHINL 281 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~------~~~~-v~------------------------~~~~tT~~~~~----~~~~~ 281 (435)
...|+++|.+|+||||+++.|+. .++. +. +..+++.+... .....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999874 1211 10 00112222110 00001
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhc--CCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCC-c-EEEEE
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTH--LPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDH-I-WLDVV 357 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~--~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~-p-iIvV~ 357 (435)
.+..++|+||||..... ...+..+ ..+.. .+|.+++|+|++ .|. +.......+.. .. | ..+|+
T Consensus 179 ~~~D~vIIDT~G~~~~~---~~l~~~l--~~i~~~~~~d~vllVvda~--~g~---~~~~~~~~~~~---~~~~i~gvVl 245 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE---KGLLEEM--KQIKEITNPDEIILVIDGT--IGQ---QAGIQAKAFKE---AVGEIGSIIV 245 (432)
T ss_dssp SSCSEEEEECCCSCSSH---HHHHHHH--HHTTSSSCCSEEEEEEEGG--GGG---GHHHHHHHHHT---TSCSCEEEEE
T ss_pred hCCCEEEEcCCCCcccc---HHHHHHH--HHHHHHhcCcceeEEeecc--ccH---HHHHHHHHHhh---cccCCeEEEE
Confidence 46789999999987531 1112222 11222 368899999987 332 22222333332 34 5 88999
Q ss_pred eccCCCCCCCccccchhhhHHHHHHHhhhhc---------------CCCcEEEcccCCCCC-HHHHHHHHHHHHhc
Q 037423 358 SKCDLLQTSPVAYVTEDEDSEHLEMASYRKM---------------GPDGAIRVSVMNEEG-LNELKDRVYQMLVG 417 (435)
Q Consensus 358 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~vSA~~g~G-I~eL~~~i~~~l~~ 417 (435)
||+|....... ...+...... ...|...+|+..|.| +..|++.+.+.+.+
T Consensus 246 nK~D~~~~~g~----------~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~e 311 (432)
T 2v3c_C 246 TKLDGSAKGGG----------ALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVDE 311 (432)
T ss_dssp ECSSSCSTTHH----------HHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSCS
T ss_pred eCCCCccchHH----------HHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 99998643210 0011111000 012334678888888 77777777655443
No 218
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.56 E-value=4.3e-08 Score=96.61 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=84.6
Q ss_pred eeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCC-------CC-CCCCHHHHHHHHH
Q 037423 271 TRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLS-------GE-CGTSPSDQFTIYK 342 (435)
Q Consensus 271 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s-------~~-~g~s~~~~~~l~~ 342 (435)
|.++....+..++..+++|||+|.... ......++. ..++++||+|++ +. ...+..+...|+.
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~--------R~~w~~yf~-~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~ 224 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSE--------RRKWIHCFE-NVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 224 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHH--------HTTGGGGCS-SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhH--------HHHHHHHhC-CCCEEEEEEECccccccccccccHhHHHHHHHHHH
Confidence 445566677778899999999998431 112223333 358999999876 22 1223444455677
Q ss_pred HHHHh--cCCCcEEEEEeccCCCCCC----Cccccchhh---hHHHHHHHhh----------hhcCCCcEEEcccCCCCC
Q 037423 343 EIKER--FSDHIWLDVVSKCDLLQTS----PVAYVTEDE---DSEHLEMASY----------RKMGPDGAIRVSVMNEEG 403 (435)
Q Consensus 343 ~l~~~--~~~~piIvV~NK~Dl~~~~----~~~~~~~~~---~~~~~~~~~~----------~~~~~~~~i~vSA~~g~G 403 (435)
.+... +.+.|+++|+||+|+.... .....+.+. .........+ .......++++||+++.|
T Consensus 225 ~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~n 304 (327)
T 3ohm_A 225 TIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTEN 304 (327)
T ss_dssp HHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHH
T ss_pred HHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHH
Confidence 66642 3578999999999986421 000000000 0001111111 122334678999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 037423 404 LNELKDRVYQMLVGQ 418 (435)
Q Consensus 404 I~eL~~~i~~~l~~~ 418 (435)
|+++|+.+.+.+...
T Consensus 305 V~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 305 IRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.55 E-value=2.4e-08 Score=95.55 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=53.5
Q ss_pred HHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCceeeeeeEEEEEeCCceE
Q 037423 208 EVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPFTTRGILMGHINLGYQNF 286 (435)
Q Consensus 208 ~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~tT~~~~~~~~~~~~~~~ 286 (435)
.+++..+.++..|.+.. ... ..+++++|.||+|||||+|++.+... .+++.+++|+...... . +..+
T Consensus 79 ~iSa~~~~gi~~L~~~l---~~~------~~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~--~-~~~~ 146 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLS---FDR------LARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS--L-ENGV 146 (262)
T ss_dssp EECCTTSCHHHHHHHHC---CCT------TCEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEE--C-TTSC
T ss_pred EEECCCCcCHHHHHHHH---HHh------hhheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE--e-CCCE
Confidence 67778888877776642 221 06899999999999999999998764 6788899998775332 2 3578
Q ss_pred EEEeCCCCCCCCc
Q 037423 287 QITDTPGLLQRRD 299 (435)
Q Consensus 287 ~liDTpG~~~~~~ 299 (435)
.+|||||+.....
T Consensus 147 ~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 147 KILDTPGILYKNI 159 (262)
T ss_dssp EEESSCEECCCCC
T ss_pred EEEECCCcccCcC
Confidence 9999999987643
No 220
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.43 E-value=1.7e-07 Score=92.76 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=84.8
Q ss_pred eeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCC-------C-CCCCHHHHHHHHH
Q 037423 271 TRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSG-------E-CGTSPSDQFTIYK 342 (435)
Q Consensus 271 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~-------~-~g~s~~~~~~l~~ 342 (435)
|.++....+.+++..+++|||+|... .......++. ..++++||+|+++ . ...+..+...|+.
T Consensus 148 TiGi~~~~~~~~~v~l~iwDtaGQe~--------~R~~w~~yy~-~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 148 TTGIHEYDFVVKDIPFHLIDVGGQRS--------ERKXWVSFFS-DVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp CCSCEEEEEESSSCEEEEEECCSCHH--------HHHHHHTTSC-SCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHH
T ss_pred eeeeEEEEEEeeeeeeccccCCCccc--------ccccHHHHhc-cCCEEEEEEECCccccccccccccchHHHHHHHHH
Confidence 45566667777889999999999842 2233333443 3589999999982 1 1123445555677
Q ss_pred HHHHh--cCCCcEEEEEeccCCCCCCC----ccccc------hhhhHHHHHH-Hhh------h-----hc----------
Q 037423 343 EIKER--FSDHIWLDVVSKCDLLQTSP----VAYVT------EDEDSEHLEM-ASY------R-----KM---------- 388 (435)
Q Consensus 343 ~l~~~--~~~~piIvV~NK~Dl~~~~~----~~~~~------~~~~~~~~~~-~~~------~-----~~---------- 388 (435)
.+... +.+.|+++|+||+|+....- ....+ .........+ ..+ . ..
T Consensus 219 ~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 298 (340)
T 4fid_A 219 DIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAV 298 (340)
T ss_dssp HHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC-------------
T ss_pred HHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhcccccccccccccc
Confidence 66642 36789999999999864210 00000 0011111111 112 0 00
Q ss_pred -CCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 389 -GPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 389 -~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
....++++||+++.||+.+|+.+.+.+..
T Consensus 299 ~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 299 NEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 12457899999999999999999998765
No 221
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.35 E-value=5.4e-06 Score=85.58 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=65.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC------CCCcccc-CCcee--------e--eeeEEEEE-----------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST------GKPEVCN-YPFTT--------R--GILMGHIN----------------- 280 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~------~~~~v~~-~~~tT--------~--~~~~~~~~----------------- 280 (435)
..+..++++|.+|+|||||++.|++ .++.+.. ..+.. . ....+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 3466889999999999999999874 2221110 00000 0 00000000
Q ss_pred --eCCceEEEEeCCCCCCCCchhhhHHHHHHHHHH----hcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEE
Q 037423 281 --LGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVL----THLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWL 354 (435)
Q Consensus 281 --~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l----~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piI 354 (435)
..+..++++||+|...........+.+.. ... ...++-+++|+|++ .| ++.......+.+.. + ...
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv-~iar~l~~~~P~evLLvLDat--tG---q~al~~ak~f~~~~-~-itg 442 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIV-RVMKKLDVEAPHEVMLTIDAS--TG---QNAVSQAKLFHEAV-G-LTG 442 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHH-HHHHTTCTTCSSEEEEEEEGG--GT---HHHHHHHHHHHHHT-C-CSE
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHH-HHHHHhccCCCCeeEEEecCc--cc---HHHHHHHHHHHhhc-C-CCE
Confidence 12467899999998755332233332221 111 22356789999987 33 33333444454432 2 235
Q ss_pred EEEeccCCC
Q 037423 355 DVVSKCDLL 363 (435)
Q Consensus 355 vV~NK~Dl~ 363 (435)
+|+||+|-.
T Consensus 443 vIlTKLD~t 451 (503)
T 2yhs_A 443 ITLTKLDGT 451 (503)
T ss_dssp EEEECGGGC
T ss_pred EEEEcCCCc
Confidence 789999964
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.33 E-value=7e-07 Score=91.13 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=77.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhh------CCCCcc-c-------------------cCCceee----eee------EEEE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS------TGKPEV-C-------------------NYPFTTR----GIL------MGHI 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~------~~~~~v-~-------------------~~~~tT~----~~~------~~~~ 279 (435)
++..++++|.+|+||||++..|+ +.++.. . ..+..+. +.. ....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678999999999999999887 222211 0 0000000 000 0000
Q ss_pred EeCCceEEEEeCCCCCC--CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEE
Q 037423 280 NLGYQNFQITDTPGLLQ--RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVV 357 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~--~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~ 357 (435)
...+..+.++||||... .......++.... ..+ .++.+++|+|++ .|. +.......+.+. -.+..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~-~~~--~pd~vlLVlDa~--~gq---~a~~~a~~f~~~--~~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY-DVL--KPDDVILVIDAS--IGQ---KAYDLASRFHQA--SPIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH-HHH--CCSEEEEEEEGG--GGG---GGHHHHHHHHHH--CSSEEEEE
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHH-Hhh--CCcceEEEEeCc--cch---HHHHHHHHHhcc--cCCcEEEE
Confidence 11256789999999765 3322222222221 122 357899999987 332 222344555543 24678999
Q ss_pred eccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCH
Q 037423 358 SKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGL 404 (435)
Q Consensus 358 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI 404 (435)
||+|...... .........+.|+.++++ |+++
T Consensus 246 TKlD~~a~~G-------------~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 246 TKMDGTAKGG-------------GALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ECGGGCSCHH-------------HHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ecccccccch-------------HHHHHHHHHCCCEEEEEC--CCCh
Confidence 9999764321 111111122468888886 6665
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.29 E-value=7.1e-06 Score=80.81 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=80.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC------CCccccCCc-------------eeeeeeEEEE----------------
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG------KPEVCNYPF-------------TTRGILMGHI---------------- 279 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~------~~~v~~~~~-------------tT~~~~~~~~---------------- 279 (435)
.++..++++|++|+||||+++.+++. ++.....+. ...+.....-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 35668899999999999999998742 211100000 0000000000
Q ss_pred -EeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 037423 280 -NLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVS 358 (435)
Q Consensus 280 -~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~N 358 (435)
...+..+.++||+|.........+.+..... .+ .+|-.++++|++. + ++.......+.+. -...++++|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~r-al--~~de~llvLDa~t--~---~~~~~~~~~~~~~--~~it~iilT 276 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIAR-VT--KPNLVIFVGDALA--G---NAIVEQARQFNEA--VKIDGIILT 276 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHH-HH--CCSEEEEEEEGGG--T---THHHHHHHHHHHH--SCCCEEEEE
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHH-Hh--cCCCCEEEEecHH--H---HHHHHHHHHHHHh--cCCCEEEEe
Confidence 0023567899999987654433333333221 22 3577899999873 3 3444445555543 134478999
Q ss_pred ccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHH
Q 037423 359 KCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 359 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL 407 (435)
|.|...... .........+.|+.+++ +|++++++
T Consensus 277 KlD~~a~~G-------------~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 277 KLDADARGG-------------AALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CGGGCSCCH-------------HHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred CcCCccchh-------------HHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 999643321 11111112245788887 67777543
No 224
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.27 E-value=2.1e-06 Score=83.55 Aligned_cols=85 Identities=19% Similarity=0.082 Sum_probs=58.9
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|++++|+|++++ ..+......|+..+.. .++|+++|+||+|+.+.... ........+....+.+++++
T Consensus 80 aD~vliV~d~~~p-~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v--------~~~~~~~~~~~~~g~~~~~~ 148 (302)
T 2yv5_A 80 VDRVIIVETLKMP-EFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEK--------KELERWISIYRDAGYDVLKV 148 (302)
T ss_dssp CCEEEEEECSTTT-TCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHH--------HHHHHHHHHHHHTTCEEEEC
T ss_pred cCEEEEEEECCCC-CCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCcccc--------HHHHHHHHHHHHCCCeEEEE
Confidence 4899999999843 2466666667776665 37999999999999753200 00122223322234589999
Q ss_pred ccCCCCCHHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRVY 412 (435)
Q Consensus 397 SA~~g~GI~eL~~~i~ 412 (435)
||++|.|+++|++.+.
T Consensus 149 SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 149 SAKTGEGIDELVDYLE 164 (302)
T ss_dssp CTTTCTTHHHHHHHTT
T ss_pred ECCCCCCHHHHHhhcc
Confidence 9999999999997764
No 225
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.23 E-value=4.7e-06 Score=88.83 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=43.9
Q ss_pred ceEEEEeCCCCCCCCc-----hhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEe
Q 037423 284 QNFQITDTPGLLQRRD-----EDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVS 358 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~-----~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~N 358 (435)
-.+.++|.||+...+. .....+..+...++.....+++++++.+- ....+....+...+... +.+.|+|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~--d~a~~~~l~la~~v~~~--g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV--DIATTEALSMAQEVDPE--GDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS--CTTTCHHHHHHHHHCSS--CCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc--hhccHHHHHHHHHHhhc--CCceEEEec
Confidence 3589999999875422 12233444444444444456777776542 22223333355555443 679999999
Q ss_pred ccCCCCCC
Q 037423 359 KCDLLQTS 366 (435)
Q Consensus 359 K~Dl~~~~ 366 (435)
|+|++...
T Consensus 223 K~Dlv~~g 230 (608)
T 3szr_A 223 KPDLVDKG 230 (608)
T ss_dssp CGGGSSSS
T ss_pred chhhcCcc
Confidence 99998653
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.23 E-value=3.9e-06 Score=80.96 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=64.5
Q ss_pred EeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCc
Q 037423 289 TDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPV 368 (435)
Q Consensus 289 iDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~ 368 (435)
-+.||+... ........+... |+|++|+|+... .+..+.. +.+...++|.++|+||+|+.+..
T Consensus 4 ~w~PGhm~k-------a~~~~~~~l~~a-DvVl~VvDAr~p--~~~~~~~-----l~~~l~~kp~ilVlNK~DL~~~~-- 66 (282)
T 1puj_A 4 QWFPGHMAK-------ARREVTEKLKLI-DIVYELVDARIP--MSSRNPM-----IEDILKNKPRIMLLNKADKADAA-- 66 (282)
T ss_dssp -----CTTH-------HHHHHHHHGGGC-SEEEEEEETTST--TTTSCHH-----HHHHCSSSCEEEEEECGGGSCHH--
T ss_pred cCCchHHHH-------HHHHHHHHHhhC-CEEEEEEeCCCC--CccCCHH-----HHHHHCCCCEEEEEECcccCCHH--
Confidence 356887532 234455556555 999999999844 4333211 11222479999999999998632
Q ss_pred cccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhc
Q 037423 369 AYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVG 417 (435)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~ 417 (435)
.......+....+.+++++||++|.|+++|++.+.+.+..
T Consensus 67 ---------~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 67 ---------VTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp ---------HHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 1122233333334589999999999999999999888764
No 227
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.17 E-value=5.6e-06 Score=80.44 Aligned_cols=145 Identities=15% Similarity=0.121 Sum_probs=77.2
Q ss_pred CCEEEEecCCCCChhhHHHHhh------CCCCccccC----Ccee-----------eeeeEE---------------EEE
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIS------TGKPEVCNY----PFTT-----------RGILMG---------------HIN 280 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~------~~~~~v~~~----~~tT-----------~~~~~~---------------~~~ 280 (435)
+..++++|.+|+||||++..++ +.++...+. +... .++... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5578999999999999999886 222211000 0000 000000 001
Q ss_pred eCCceEEEEeCCCCCC--CCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEE
Q 037423 281 LGYQNFQITDTPGLLQ--RRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVV 357 (435)
Q Consensus 281 ~~~~~~~liDTpG~~~--~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~ 357 (435)
..+..++++||||... .......++..+ .... .+|.+++|+|+. .+ ++.......+.+ ..| ..+|+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i--~~~~-~~d~vllVvda~--~g---~~~~~~~~~~~~---~~~i~gvVl 246 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNI--YEAI-KPDEVTLVIDAS--IG---QKAYDLASKFNQ---ASKIGTIII 246 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHH--HHHH-CCSEEEEEEEGG--GG---GGHHHHHHHHHH---TCTTEEEEE
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHH--HHHh-cCCEEEEEeeCC--ch---HHHHHHHHHHHh---hCCCCEEEE
Confidence 1456799999999876 211111111111 1122 357899999986 23 233323344443 345 77899
Q ss_pred eccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHH
Q 037423 358 SKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNEL 407 (435)
Q Consensus 358 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL 407 (435)
||+|..... ..........+.|+.+++ +|++++++
T Consensus 247 nk~D~~~~~-------------g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 247 TKMDGTAKG-------------GGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp ECGGGCTTH-------------HHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred eCCCCCcch-------------HHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 999975321 111222333346787777 57777654
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.16 E-value=3.4e-05 Score=75.16 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
++..++++|++|+||||++..++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 44578999999999999999886
No 229
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.12 E-value=8.8e-06 Score=81.43 Aligned_cols=91 Identities=15% Similarity=0.062 Sum_probs=60.4
Q ss_pred HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCC
Q 037423 312 VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPD 391 (435)
Q Consensus 312 ~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (435)
.+...++++++|+|+++ +. ..|...+.+...++|+++|+||+|+.+..... +.. ...+..+....+.
T Consensus 65 ~i~~~~~~il~VvD~~d-----~~--~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~---~~~---~~~l~~~~~~~g~ 131 (368)
T 3h2y_A 65 GIGKSDALVVKIVDIFD-----FN--GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKH---DKV---KHWMRYSAKQLGL 131 (368)
T ss_dssp HHHHSCCEEEEEEETTS-----HH--HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCH---HHH---HHHHHHHHHHTTC
T ss_pred HHhccCcEEEEEEECCC-----Cc--ccHHHHHHHHhCCCcEEEEEEChhcCCcccCH---HHH---HHHHHHHHHHcCC
Confidence 34445579999999973 22 23556666666689999999999998643111 011 1111222222222
Q ss_pred ---cEEEcccCCCCCHHHHHHHHHHHH
Q 037423 392 ---GAIRVSVMNEEGLNELKDRVYQML 415 (435)
Q Consensus 392 ---~~i~vSA~~g~GI~eL~~~i~~~l 415 (435)
+++.+||++|.|+++|++.+.+..
T Consensus 132 ~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 132 KPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 789999999999999999998765
No 230
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.02 E-value=1.3e-05 Score=80.31 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=58.2
Q ss_pred cCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCC---C
Q 037423 315 HLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGP---D 391 (435)
Q Consensus 315 ~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 391 (435)
..++++++|+|+++..+ .|...+.+.+.++|+++|+||+|+.+..... + .....+..+....+ .
T Consensus 70 ~~~~lil~VvD~~d~~~-------s~~~~l~~~l~~~piilV~NK~DLl~~~~~~----~--~~~~~l~~~~~~~g~~~~ 136 (369)
T 3ec1_A 70 ESKALVVNIVDIFDFNG-------SFIPGLPRFAADNPILLVGNKADLLPRSVKY----P--KLLRWMRRMAEELGLCPV 136 (369)
T ss_dssp HHCCEEEEEEETTCSGG-------GCCSSHHHHCTTSCEEEEEECGGGSCTTCCH----H--HHHHHHHHHHHTTTCCCS
T ss_pred ccCcEEEEEEECCCCCC-------chhhHHHHHhCCCCEEEEEEChhcCCCccCH----H--HHHHHHHHHHHHcCCCcc
Confidence 33589999999985421 2344444445589999999999998653111 0 11112222222222 3
Q ss_pred cEEEcccCCCCCHHHHHHHHHHHHh
Q 037423 392 GAIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 392 ~~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
+++.+||++|.|+++|++.+.+...
T Consensus 137 ~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 137 DVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6899999999999999999987653
No 231
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.00 E-value=7.2e-06 Score=75.29 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=61.5
Q ss_pred HHHHHHhcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHHh--cCCCcEEEEEecc-CCCCCCCccccchhhhHHHHHHH
Q 037423 308 LTLAVLTHLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKER--FSDHIWLDVVSKC-DLLQTSPVAYVTEDEDSEHLEMA 383 (435)
Q Consensus 308 ~~~~~l~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~~--~~~~piIvV~NK~-Dl~~~~~~~~~~~~~~~~~~~~~ 383 (435)
+...++... |++|||+|++++......+. ..+...+.+. ..+.|++|..||. |+...-... + ..+...+.
T Consensus 118 lWr~Yy~~T-dglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~----E-I~e~L~L~ 191 (227)
T 3l82_B 118 QIQKVCEVV-DGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCF----Y-LAHELHLN 191 (227)
T ss_dssp CHHHHHHHC-SEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHH----H-HHHHTTGG
T ss_pred HHHHHhcCC-CEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHH----H-HHHHcCCc
Confidence 344555554 89999999997644332211 1112222221 2468999999996 674332111 1 11111222
Q ss_pred hhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhcc
Q 037423 384 SYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQ 418 (435)
Q Consensus 384 ~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~ 418 (435)
.. . ....+..|||++|+|+.+-++|+.+.+...
T Consensus 192 ~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 192 LL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp GG-C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CC-C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 22 1 345789999999999999999999877544
No 232
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.98 E-value=0.00061 Score=66.13 Aligned_cols=121 Identities=20% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC------CCCccccCCce---------e------eeeeEEEEE--------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST------GKPEVCNYPFT---------T------RGILMGHIN-------------- 280 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~------~~~~v~~~~~t---------T------~~~~~~~~~-------------- 280 (435)
++..++++|++|+||||+++.+++ .++........ + .........
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 456789999999999999999874 12111110000 0 000000000
Q ss_pred --eCCceEEEEeCCCCCCCCchhhhHHHHHHHH---HHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 037423 281 --LGYQNFQITDTPGLLQRRDEDRNNLEKLTLA---VLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLD 355 (435)
Q Consensus 281 --~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~---~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIv 355 (435)
..+....++||.|..........++.++... ++...++-+++++|++ .|.....+ ...+.+.. + ..++
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpt--sglD~~~~---~~~~~~~~-g-~t~i 251 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN--TGLNMLPQ---AREFNEVV-G-ITGL 251 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGG--GGGGGHHH---HHHHHHHT-C-CCEE
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCC--CCcCHHHH---HHHHHHhc-C-CCEE
Confidence 0123467999999976543333333322221 1233456678999966 34433333 34444321 3 3467
Q ss_pred EEeccCCC
Q 037423 356 VVSKCDLL 363 (435)
Q Consensus 356 V~NK~Dl~ 363 (435)
++||.|-.
T Consensus 252 iiThlD~~ 259 (302)
T 3b9q_A 252 ILTKLDGS 259 (302)
T ss_dssp EEECCSSC
T ss_pred EEeCCCCC
Confidence 88998865
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.92 E-value=0.00044 Score=67.73 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
++..++++|.+|+||||++..++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999876
No 234
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.91 E-value=0.00088 Score=66.58 Aligned_cols=122 Identities=18% Similarity=0.118 Sum_probs=65.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC------CCCccccCCc-e--------ee--eeeEEEEE------------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST------GKPEVCNYPF-T--------TR--GILMGHIN------------------ 280 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~------~~~~v~~~~~-t--------T~--~~~~~~~~------------------ 280 (435)
++..++++|++|+||||+++.+++ .++....... . +. ......+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 456789999999999999999874 1211111000 0 00 00000010
Q ss_pred --eCCceEEEEeCCCCCCCCchhhhHHHHHHH---HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEE
Q 037423 281 --LGYQNFQITDTPGLLQRRDEDRNNLEKLTL---AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLD 355 (435)
Q Consensus 281 --~~~~~~~liDTpG~~~~~~~~~~~ie~~~~---~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIv 355 (435)
..+....++||.|..........++.++.. .++...++-+++|+|++ .|.....+ ...+.+.. + ..++
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpt--tglD~~~~---~~~~~~~~-g-~t~i 308 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGN--TGLNMLPQ---AREFNEVV-G-ITGL 308 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGG--GGGGGHHH---HHHHHHHT-C-CCEE
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCC--CCCCHHHH---HHHHHHhc-C-CeEE
Confidence 013346899999987654333333332221 23344567789999966 34433333 33444321 2 3467
Q ss_pred EEeccCCCC
Q 037423 356 VVSKCDLLQ 364 (435)
Q Consensus 356 V~NK~Dl~~ 364 (435)
++||.|-..
T Consensus 309 iiThlD~~~ 317 (359)
T 2og2_A 309 ILTKLDGSA 317 (359)
T ss_dssp EEESCTTCS
T ss_pred EEecCcccc
Confidence 899988653
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.87 E-value=4.4e-06 Score=81.33 Aligned_cols=77 Identities=29% Similarity=0.450 Sum_probs=51.4
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCCc-------eeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYPF-------TTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~~-------tT~~~~~ 276 (435)
.+..+|+..+.++++|.+.. .+..++++|++|+|||||+|.++ .. ...+.... +|+....
T Consensus 144 ~~~~~SA~~g~gi~~L~~~l-----------~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~ 211 (302)
T 2yv5_A 144 DVLKVSAKTGEGIDELVDYL-----------EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL 211 (302)
T ss_dssp EEEECCTTTCTTHHHHHHHT-----------TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE
T ss_pred eEEEEECCCCCCHHHHHhhc-----------cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE
Confidence 56678899999998888753 36689999999999999999998 43 22333222 3333222
Q ss_pred EEEEeCCceEEEEeCCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLLQ 296 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~ 296 (435)
+.... --.++||||+..
T Consensus 212 --~~~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 212 --IPFGK-GSFVGDTPGFSK 228 (302)
T ss_dssp --EEETT-TEEEESSCCCSS
T ss_pred --EEcCC-CcEEEECcCcCc
Confidence 22212 236899999863
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.83 E-value=5.9e-05 Score=73.41 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC------CCCccccCCce-------------eeeeeEEEE-----------------
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST------GKPEVCNYPFT-------------TRGILMGHI----------------- 279 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~------~~~~v~~~~~t-------------T~~~~~~~~----------------- 279 (435)
++..++++|++|+||||+++.+++ .++........ -..+....-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999873 11111100000 000000000
Q ss_pred EeCCceEEEEeCCCCCCCCchhhhHHHHHHH---HHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEE
Q 037423 280 NLGYQNFQITDTPGLLQRRDEDRNNLEKLTL---AVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDV 356 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~---~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV 356 (435)
...+..+.++||+|...........+.++.. .++...++.+++++|+.. +. +....+..+.+.. + ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t--~~---~~~~~~~~~~~~~-~-~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVT--GQ---NGLEQAKKFHEAV-G-LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTB--CT---HHHHHHHHHHHHH-C-CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHH--HH---HHHHHHHHHHHHc-C-CcEEE
Confidence 0113456799999987654433333433322 234455788889999873 32 2333344444321 2 35688
Q ss_pred EeccCCCC
Q 037423 357 VSKCDLLQ 364 (435)
Q Consensus 357 ~NK~Dl~~ 364 (435)
+||.|...
T Consensus 254 vTh~d~~a 261 (304)
T 1rj9_A 254 VTKLDGTA 261 (304)
T ss_dssp EECTTSSC
T ss_pred EECCcccc
Confidence 99998653
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=0.0011 Score=67.23 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=40.2
Q ss_pred CCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 282 GYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 282 ~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
.+..++|+||||...... ..+..+....-.-.++.+++|+|+. .+ ++.......+.+.. ...-+|+||+|
T Consensus 179 ~~~DvVIIDTaG~l~~d~---~l~~el~~i~~~~~pd~vlLVvDa~--tg---q~av~~a~~f~~~l--~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDE---PLMGELARLKEVLGPDEVLLVLDAM--TG---QEALSVARAFDEKV--GVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCCH---HHHHHHHHHHHHHCCSEEEEEEEGG--GT---THHHHHHHHHHHHT--CCCEEEEESGG
T ss_pred CCCCEEEEcCCCcccccH---HHHHHHHHhhhccCCceEEEEEecc--ch---HHHHHHHHHHHhcC--CceEEEEeCcC
Confidence 356789999999865422 1222221111111357789999987 33 33333334444321 23457999999
Q ss_pred CCC
Q 037423 362 LLQ 364 (435)
Q Consensus 362 l~~ 364 (435)
...
T Consensus 249 ~~~ 251 (425)
T 2ffh_A 249 GDA 251 (425)
T ss_dssp GCS
T ss_pred Ccc
Confidence 653
No 238
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.74 E-value=2.3e-05 Score=74.65 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=55.8
Q ss_pred CCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcccc
Q 037423 292 PGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYV 371 (435)
Q Consensus 292 pG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~ 371 (435)
||+..... ......+... |+|++|+|+... .+..+.. +. + . ++|.++|+||+|+.+..
T Consensus 5 PGhm~ka~-------~~~~~~l~~~-D~vl~VvDar~P--~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~----- 62 (262)
T 3cnl_A 5 PGHIEKAK-------RQIKDLLRLV-NTVVEVRDARAP--FATSAYG--VD-F---S-RKETIILLNKVDIADEK----- 62 (262)
T ss_dssp ----CCTT-------HHHHHHHTTC-SEEEEEEETTST--TTTSCTT--SC-C---T-TSEEEEEEECGGGSCHH-----
T ss_pred chHHHHHH-------HHHHHHHhhC-CEEEEEeeCCCC--CcCcChH--HH-h---c-CCCcEEEEECccCCCHH-----
Confidence 77765432 2344445554 999999999844 3332211 11 1 1 68999999999998632
Q ss_pred chhhhHHHHHHHhhhhcCCCcEEEcccCCCCCHHHHHHHHHHH
Q 037423 372 TEDEDSEHLEMASYRKMGPDGAIRVSVMNEEGLNELKDRVYQM 414 (435)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~ 414 (435)
.......+....+.++ .+||++|.|+++|++.+.+.
T Consensus 63 ------~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 63 ------TTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp ------HHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred ------HHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 1112222222234567 99999999999998877553
No 239
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.72 E-value=7e-05 Score=76.63 Aligned_cols=64 Identities=17% Similarity=0.098 Sum_probs=43.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC---------------CCccccCCceeeeeeEEEEEeC-----------CceEEE
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG---------------KPEVCNYPFTTRGILMGHINLG-----------YQNFQI 288 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~---------------~~~v~~~~~tT~~~~~~~~~~~-----------~~~~~l 288 (435)
.+-..|+++|++++|||+|+|.|++. ....-...+||...+.+.+.+. +..+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34557899999999999999999853 1111112235555555555543 246899
Q ss_pred EeCCCCCCCC
Q 037423 289 TDTPGLLQRR 298 (435)
Q Consensus 289 iDTpG~~~~~ 298 (435)
+||||+.+..
T Consensus 145 lDTeG~~~~~ 154 (447)
T 3q5d_A 145 MDTQGTFDSQ 154 (447)
T ss_dssp EEEECCCSSH
T ss_pred EcCCcccccc
Confidence 9999997653
No 240
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.68 E-value=8.2e-05 Score=71.49 Aligned_cols=104 Identities=10% Similarity=-0.003 Sum_probs=62.9
Q ss_pred HHHHHHhcCCcEEEEEEeCCCCCCCCHHHH-HHHHHHHHH--hcCCCcEEEEEec-cCCCCCCCccccchhhhHHHHHHH
Q 037423 308 LTLAVLTHLPTAILFVHDLSGECGTSPSDQ-FTIYKEIKE--RFSDHIWLDVVSK-CDLLQTSPVAYVTEDEDSEHLEMA 383 (435)
Q Consensus 308 ~~~~~l~~~~d~il~ViD~s~~~g~s~~~~-~~l~~~l~~--~~~~~piIvV~NK-~Dl~~~~~~~~~~~~~~~~~~~~~ 383 (435)
+...++... |++|||+|++++......+. ..+...+.+ ...+.|++|..|| -|+...-... + ..+...+.
T Consensus 203 lWr~Yy~~t-dglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~----E-I~e~L~L~ 276 (312)
T 3l2o_B 203 QIQKVCEVV-DGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCF----Y-LAHELHLN 276 (312)
T ss_dssp HHHHHHHHC-SEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHH----H-HHHHTTGG
T ss_pred HHHHHhcCC-CEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHH----H-HHHHcCCc
Confidence 344455554 89999999997765542221 112222322 1257899999997 5775433211 1 11111122
Q ss_pred hhhhcCCCcEEEcccCCCCCHHHHHHHHHHHHhccc
Q 037423 384 SYRKMGPDGAIRVSVMNEEGLNELKDRVYQMLVGQM 419 (435)
Q Consensus 384 ~~~~~~~~~~i~vSA~~g~GI~eL~~~i~~~l~~~~ 419 (435)
.. . ....+..+||.+|+|+.|-++|+.+.+...+
T Consensus 277 ~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 277 LL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp GG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cC-C-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 22 1 3456899999999999999999999876543
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.62 E-value=0.00034 Score=71.34 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=63.1
Q ss_pred CCEEEEecCCCCChhhHHHHhh-------CCCCcc-ccCCcee--------------eeeeEE---------------EE
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIS-------TGKPEV-CNYPFTT--------------RGILMG---------------HI 279 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~-------~~~~~v-~~~~~tT--------------~~~~~~---------------~~ 279 (435)
...|+++|.+|+||||++..|+ +.++.+ ..-++.+ .++... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999887 333211 0000000 000000 01
Q ss_pred EeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCc-EEEEEe
Q 037423 280 NLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHI-WLDVVS 358 (435)
Q Consensus 280 ~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~p-iIvV~N 358 (435)
...+..++||||||....... .+..+........++.+++|+|+. .+.... .....+... .+ .-+|+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~---l~~~L~~~~~~~~p~~vllVvda~--~g~~~~---~~~~~f~~~---l~i~gvVln 248 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEA---MMDEIKQVHASINPVETLFVVDAM--TGQDAA---NTAKAFNEA---LPLTGVVLT 248 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHH---HHHHHHHHHHHSCCSEEEEEEETT--BCTTHH---HHHHHHHHH---SCCCCEEEE
T ss_pred HhCCCCEEEEECCCcccccHH---HHHHHHHHHHhhcCcceeEEeecc--hhHHHH---HHHHHHhcc---CCCeEEEEe
Confidence 113568999999998654322 122222111122468899999987 343332 233333332 33 347999
Q ss_pred ccCCCC
Q 037423 359 KCDLLQ 364 (435)
Q Consensus 359 K~Dl~~ 364 (435)
|+|...
T Consensus 249 K~D~~~ 254 (433)
T 2xxa_A 249 KVDGDA 254 (433)
T ss_dssp CTTSSS
T ss_pred cCCCCc
Confidence 999753
No 242
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.59 E-value=2.4e-06 Score=83.42 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=46.3
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCC-CccccCC-------ceeeeeeE
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGK-PEVCNYP-------FTTRGILM 276 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~-~~v~~~~-------~tT~~~~~ 276 (435)
.+..+++.++.+++.|.++. .+..++++|++|+|||||+|.|++.. ..++... .||+....
T Consensus 152 ~v~~~sa~~~~g~~~L~~~~-----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~ 220 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPHF-----------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL 220 (307)
T ss_dssp CEEECCHHHHTTCTTTGGGG-----------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE
T ss_pred eEEEEecCCCCCHHHHHhhc-----------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH
Confidence 45556666666666655432 46789999999999999999998743 2222222 24444322
Q ss_pred EEEEeCCceEEEEeCCCCCCC
Q 037423 277 GHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 277 ~~~~~~~~~~~liDTpG~~~~ 297 (435)
. ... ...++||||+...
T Consensus 221 ~--~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 221 I--HTS--GGLVADTPGFSSL 237 (307)
T ss_dssp E--EET--TEEEESSCSCSSC
T ss_pred h--hcC--CEEEecCCCcccc
Confidence 2 222 2368999998753
No 243
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.59 E-value=2e-05 Score=76.54 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=50.7
Q ss_pred chhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC-ccccCCc-------eeeeee
Q 037423 204 QRLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP-EVCNYPF-------TTRGIL 275 (435)
Q Consensus 204 ~~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~-~v~~~~~-------tT~~~~ 275 (435)
.....+|+..+.+++++.+.. .+..++++|++|+|||||+|.+.+... ..+.... +|....
T Consensus 147 ~~~~~~SAktg~gv~~lf~~l-----------~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~ 215 (301)
T 1u0l_A 147 YPIVKTSAKTGMGIEELKEYL-----------KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ 215 (301)
T ss_dssp SCEEECCTTTCTTHHHHHHHH-----------SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC
T ss_pred CcEEEEECCCCcCHHHHHHHh-----------cCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE
Confidence 345668889999988887654 356799999999999999999987432 2222221 333222
Q ss_pred EEEEEeCCceEEEEeCCCCCCC
Q 037423 276 MGHINLGYQNFQITDTPGLLQR 297 (435)
Q Consensus 276 ~~~~~~~~~~~~liDTpG~~~~ 297 (435)
. +.... .-.++||||+...
T Consensus 216 ~--~~~~~-~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 216 L--LKFDF-GGYVVDTPGFANL 234 (301)
T ss_dssp E--EECTT-SCEEESSCSSTTC
T ss_pred E--EEcCC-CCEEEECcCCCcc
Confidence 1 12211 2368999998643
No 244
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.48 E-value=2e-05 Score=78.35 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=49.9
Q ss_pred hhHHHHhhcCCChhHHHHHHHHhccCCccCCCCCEEEEecCCCCChhhHHHHhhCCCC--ccccCC---c----eeeeee
Q 037423 205 RLEEVFNREGKAVDDLLNIAKTLRAMPVVDLETPTLCLVGAPNVGKSSLVRVISTGKP--EVCNYP---F----TTRGIL 275 (435)
Q Consensus 205 ~~~~v~~~~~~~l~~L~~~~~~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~---~----tT~~~~ 275 (435)
.+..+++.++.++..|.... .+..++++|++|+|||||+|.|++... .++... + +|....
T Consensus 194 ~v~~~Sa~~~~gl~~L~~~~-----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~ 262 (358)
T 2rcn_A 194 RVLMVSSHTQDGLKPLEEAL-----------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAAR 262 (358)
T ss_dssp CEEECBTTTTBTHHHHHHHH-----------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCE
T ss_pred cEEEEecCCCcCHHHHHHhc-----------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEE
Confidence 46667888888888877642 356899999999999999999987532 222221 1 333333
Q ss_pred EEEEEeCCceEEEEeCCCCCC
Q 037423 276 MGHINLGYQNFQITDTPGLLQ 296 (435)
Q Consensus 276 ~~~~~~~~~~~~liDTpG~~~ 296 (435)
.+.+. ....++||||+.+
T Consensus 263 i~~v~---q~~~l~dtpgv~e 280 (358)
T 2rcn_A 263 LYHFP---HGGDVIDSPGVRE 280 (358)
T ss_dssp EEECT---TSCEEEECHHHHT
T ss_pred EEEEC---CCCEecCcccHHH
Confidence 33322 2235899999854
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.33 E-value=0.00014 Score=70.36 Aligned_cols=24 Identities=17% Similarity=0.450 Sum_probs=21.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
.++..++++|++|+||||++..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999876
No 246
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.21 E-value=0.0018 Score=62.54 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
++..++++|.+|+||||++..++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999999886
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.00039 Score=67.66 Aligned_cols=84 Identities=11% Similarity=0.034 Sum_probs=49.7
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|.+++|+|+..+ .++......++..... .++|.++|+||+||.+... .......+..+....+.+++.+
T Consensus 87 vD~v~~V~~~~~p-~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~-------~~~~~~~~~~~y~~~g~~v~~~ 156 (307)
T 1t9h_A 87 VDQAVLVFSAVQP-SFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD-------TEDTIQAYAEDYRNIGYDVYLT 156 (307)
T ss_dssp CCEEEEEEESTTT-TCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH-------HHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCEEEEEEeCCCC-CCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhh-------hHHHHHHHHHHHHhCCCeEEEE
Confidence 3889999998743 2333322222222222 4789999999999986531 0000112222222223489999
Q ss_pred ccCCCCCHHHHHHH
Q 037423 397 SVMNEEGLNELKDR 410 (435)
Q Consensus 397 SA~~g~GI~eL~~~ 410 (435)
||.+|.|+++|++.
T Consensus 157 sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 157 SSKDQDSLADIIPH 170 (307)
T ss_dssp CHHHHTTCTTTGGG
T ss_pred ecCCCCCHHHHHhh
Confidence 99999988776543
No 248
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.87 E-value=0.004 Score=61.76 Aligned_cols=83 Identities=18% Similarity=0.022 Sum_probs=48.3
Q ss_pred CcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchhhhHHHHHHHhhhhcCCCcEEEc
Q 037423 317 PTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCDLLQTSPVAYVTEDEDSEHLEMASYRKMGPDGAIRV 396 (435)
Q Consensus 317 ~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 396 (435)
.|.+++| |+..+ .++......++...... ++|.++|+||+||.+.. . .........+....+.+++.+
T Consensus 131 vD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~-------~-~~~~~~~~~~y~~~G~~v~~~ 198 (358)
T 2rcn_A 131 IDQIVIV-SAILP-ELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDE-------G-MDFVNEQMDIYRNIGYRVLMV 198 (358)
T ss_dssp CCEEEEE-EESTT-TCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHH-------H-HHHHHHHHHHHHTTTCCEEEC
T ss_pred CCEEEEE-EeCCC-CCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCch-------h-HHHHHHHHHHHHhCCCcEEEE
Confidence 3767766 44332 34444333333222232 78899999999998642 1 001112222222334579999
Q ss_pred ccCCCCCHHHHHHHH
Q 037423 397 SVMNEEGLNELKDRV 411 (435)
Q Consensus 397 SA~~g~GI~eL~~~i 411 (435)
||.+|.|+++|...+
T Consensus 199 Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL 213 (358)
T ss_dssp BTTTTBTHHHHHHHH
T ss_pred ecCCCcCHHHHHHhc
Confidence 999999999987643
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.52 E-value=0.00064 Score=61.83 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=41.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEEeCCCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQITDTPGL 294 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~ 294 (435)
.+..++++|++|+|||||++.|++... .....+.||+....+. .+|..+.++|+..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHh
Confidence 567899999999999999999986432 3445667887766543 45666777776554
No 250
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.13 E-value=0.012 Score=52.38 Aligned_cols=66 Identities=14% Similarity=0.014 Sum_probs=42.5
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHh---cCCCcEEEEEec
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKER---FSDHIWLDVVSK 359 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~---~~~~piIvV~NK 359 (435)
...++++|||+.... .....+.. +|.+++++.++. .+ .....+++.+.+. ..+.++.+|+|+
T Consensus 75 ~yD~viiD~~~~~~~----------~~~~~l~~-ad~viiv~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV----------ITSAAVMV-SDLVIIPVTPSP---LD-FSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp TSSEEEEECCSSSSH----------HHHHHHHH-CSEEEEEECSCT---TT-HHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCCEEEEECCCCCCH----------HHHHHHHH-CCEEEEEecCCH---HH-HHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 467899999987621 12233333 488999988763 34 5555556666543 234677999999
Q ss_pred cCCC
Q 037423 360 CDLL 363 (435)
Q Consensus 360 ~Dl~ 363 (435)
+|..
T Consensus 140 ~~~~ 143 (206)
T 4dzz_A 140 KIEM 143 (206)
T ss_dssp BCTT
T ss_pred cCCC
Confidence 9843
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.0042 Score=54.96 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..++++|++|+|||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4668999999999999999999863
No 252
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.42 E-value=0.071 Score=54.28 Aligned_cols=88 Identities=19% Similarity=0.189 Sum_probs=48.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC------------------CCCcccc-CCceeeeeeEEE----EEe-CC--ceEEEE
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST------------------GKPEVCN-YPFTTRGILMGH----INL-GY--QNFQIT 289 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~------------------~~~~v~~-~~~tT~~~~~~~----~~~-~~--~~~~li 289 (435)
+-..|+++|..++|||+|+|.+++ ..+.+++ ...+|+++-... +.. ++ ..+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 445678999999999999996641 1222221 223555554321 111 22 458999
Q ss_pred eCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEe
Q 037423 290 DTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHD 325 (435)
Q Consensus 290 DTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD 325 (435)
||.|..+..........-++...+- .+++||=..
T Consensus 146 DTEG~~d~~~~~~~d~~ifaLa~LL--SS~~IyN~~ 179 (457)
T 4ido_A 146 DTQGTFDSQSTLRDSATVFALSTMI--SSIQVYNLS 179 (457)
T ss_dssp EECCBTCTTCCHHHHHHHHHHHHHH--CSEEEEEEE
T ss_pred eccCCCCcccCccccHHHHHHHHHH--hhheeeccc
Confidence 9999877644322223333333332 245555544
No 253
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.06 E-value=0.025 Score=59.23 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=60.5
Q ss_pred cccchHHHHHhhhhcCCCCcHHHHHHHHHHHhhhHHH-----HhhHH----HHHhhccccHHHHHHHHHhccchhHHHHh
Q 037423 141 RKCLHPYERSLTELTLGDGNYEKVLKNVDALRKKVVS-----AGKEH----ASLCAKSLSKREAEERLSEGLQRLEEVFN 211 (435)
Q Consensus 141 ~~~L~~f~~~l~e~~~~~~~y~~~L~~l~~~~~~i~~-----i~k~~----~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ 211 (435)
..++..|.+.+.+..++++..+.+..++++++..... +..+| ..++|...+... ..+.+......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~~------~~~~~~~~~l~ 80 (543)
T 3m6a_A 7 TGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDK------LDLKEAGRLLD 80 (543)
T ss_dssp CCTTTHHHHHHHSSSCCCHHHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCCC------CCTTTGGGTHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCcccccc------ccHHHHHHHHH
Confidence 4678899999999999888888888888776543321 11222 223443221100 00111111112
Q ss_pred hcCCChhHHHHHHH---HhccCCccCCCCCEEEEecCCCCChhhHHHHhhC
Q 037423 212 REGKAVDDLLNIAK---TLRAMPVVDLETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 212 ~~~~~l~~L~~~~~---~l~~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..-.++..+..... .+..+. ...++..++++|+||+||||+++.+.+
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~-~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT-KSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS-SSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc-ccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 22223333322111 111111 112577899999999999999999875
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.02 E-value=0.0065 Score=54.59 Aligned_cols=49 Identities=20% Similarity=0.316 Sum_probs=32.1
Q ss_pred EEEEecCCCCChhhHHHHhhCCCC--ccccCCceeeeeeEEEEEeCCceEEEE
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKP--EVCNYPFTTRGILMGHINLGYQNFQIT 289 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~--~v~~~~~tT~~~~~~~~~~~~~~~~li 289 (435)
.|+++|++|+||+||++.|+.... ..-..+.||+....+. .+|..+.++
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fv 53 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFV 53 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEee
Confidence 488999999999999999975432 2334566777654432 234444443
No 255
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.88 E-value=0.01 Score=53.44 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+|||||++.+.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356799999999999999999875
No 256
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.75 E-value=0.095 Score=47.35 Aligned_cols=67 Identities=4% Similarity=-0.105 Sum_probs=42.4
Q ss_pred CceEEEEeCCCC-CCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 283 YQNFQITDTPGL-LQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 283 ~~~~~liDTpG~-~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
...++++|||+. ... .....+. .+|.+++++.++. .+......+++.+.... +.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~----------~~~~~l~-~aD~viiv~~~~~---~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE----------DLEALAD-GCDLLVIPSTPDA---LALDALMLTIETLQKLG-NNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS----------HHHHHHH-TSSEEEEEECSSH---HHHHHHHHHHHHHHHTC-SSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH----------HHHHHHH-HCCEEEEEecCCc---hhHHHHHHHHHHHHhcc-CCCEEEEEEecC
Confidence 467899999987 432 1223333 3488888888652 23444445556665532 567889999998
Q ss_pred CCC
Q 037423 362 LLQ 364 (435)
Q Consensus 362 l~~ 364 (435)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.74 E-value=0.015 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+||||+++.+++.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4678999999999999999999764
No 258
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.73 E-value=0.015 Score=53.54 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++..++++|++|+|||||++.+++.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46788999999999999999999864
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.64 E-value=0.016 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+||||+++.+++.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567899999999999999999875
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.62 E-value=0.023 Score=51.30 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|++|+|||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999998753
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.56 E-value=0.017 Score=52.21 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+|||||++.+++-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5778999999999999999998764
No 262
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.50 E-value=0.078 Score=50.69 Aligned_cols=67 Identities=13% Similarity=-0.027 Sum_probs=39.9
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhc--CCCcEE-EEEec
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERF--SDHIWL-DVVSK 359 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~--~~~piI-vV~NK 359 (435)
+..++|+|||+...... ....+ ..+|.+++|++++ ..+......+++.+.... .+.+++ +|+|+
T Consensus 156 ~yD~ViiD~p~~~~~~~---------~~~~l-~~aD~viiv~~~~---~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~ 222 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG---------FAAPL-QHADQAVVVTAND---FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANR 222 (307)
T ss_dssp SCSEEEEEECCSSCCGG---------GGGGG-GTCSEEEEEECSS---HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEES
T ss_pred cCCEEEEeCCCccchHH---------HHHHH-HHCCEEEEEecCc---HHHHHHHHHHHHHHHHhhhcCCCceEEEEEec
Confidence 46789999988654321 11122 3358888888765 223445445566665531 345544 89999
Q ss_pred cCC
Q 037423 360 CDL 362 (435)
Q Consensus 360 ~Dl 362 (435)
++-
T Consensus 223 ~~~ 225 (307)
T 3end_A 223 SRA 225 (307)
T ss_dssp CSC
T ss_pred CCc
Confidence 983
No 263
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.33 E-value=0.018 Score=51.13 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.7
Q ss_pred EEEEecCCCCChhhHHHHhhCC
Q 037423 239 TLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.28 E-value=0.018 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|++|+|||||++.+++.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 35778999999999999999998863
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.26 E-value=0.025 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 56788999999999999999999874
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.01 E-value=0.021 Score=50.55 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..++++|++|+||||+++.|++.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999853
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.00 E-value=0.027 Score=50.90 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|++|+||||+++.|++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 35678999999999999999999864
No 268
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.97 E-value=0.029 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.90 E-value=0.029 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+||||+++.|.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998764
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.88 E-value=0.033 Score=51.75 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56788999999999999999999875
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.85 E-value=0.034 Score=52.52 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56788999999999999999999874
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.66 E-value=0.028 Score=48.88 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..++++|+.|+|||||++.+++.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35668999999999999999998864
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.61 E-value=0.028 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+|||||++.+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 466789999999999999998653
No 274
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.60 E-value=0.039 Score=52.14 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 56788999999999999999999874
No 275
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.57 E-value=0.034 Score=49.73 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|++|+||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999875
No 276
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.55 E-value=0.038 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999874
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.49 E-value=0.039 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 46778999999999999999999874
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.49 E-value=0.042 Score=51.69 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.48 E-value=0.041 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999875
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.47 E-value=0.041 Score=52.11 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46788999999999999999999874
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.47 E-value=0.042 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 56788999999999999999999874
No 282
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.46 E-value=0.56 Score=43.00 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|+||+|||+++..+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.45 E-value=0.037 Score=51.56 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999864
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.45 E-value=0.03 Score=50.32 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+|||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 285
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.43 E-value=0.038 Score=50.57 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 286
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.42 E-value=0.041 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999999875
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.40 E-value=0.044 Score=51.84 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.7
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56788999999999999999999885
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.38 E-value=0.044 Score=51.99 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56788999999999999999999874
No 289
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.33 E-value=0.044 Score=50.95 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999874
No 290
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.30 E-value=0.04 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..++++|++|+||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999998753
No 291
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.26 E-value=0.046 Score=51.20 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46778999999999999999999875
No 292
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.25 E-value=0.048 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46778999999999999999999874
No 293
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.23 E-value=0.038 Score=50.57 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=17.8
Q ss_pred CCCCEEEEecCCCCChhhHHHHhh-CC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIS-TG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~-~~ 260 (435)
.++..++++|++|+||||+++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 356789999999999999999998 64
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.23 E-value=0.039 Score=53.36 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+++-.++++|++|+|||||++.|++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 4678999999999999999999874
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.21 E-value=0.037 Score=47.89 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+..++++|++|+||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999998753
No 296
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.20 E-value=0.047 Score=51.09 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999984
No 297
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.15 E-value=0.048 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46778999999999999999999874
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.98 E-value=0.045 Score=49.80 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++-.++++|++|+|||||++.+++-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4678999999999999999999875
No 299
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.96 E-value=0.054 Score=50.85 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999875
No 300
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.79 E-value=0.39 Score=46.38 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+++.|++|+||||+++.+++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998875
No 301
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.79 E-value=0.059 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=21.2
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
-.++++|++|+|||||++.+++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999874
No 302
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.77 E-value=0.63 Score=39.06 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....|.+.|++|+|||++...+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999998754
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.77 E-value=0.061 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
++..++++|++|+||||+++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.76 E-value=0.046 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|++|+||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 305
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.74 E-value=0.24 Score=48.35 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.9
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+++.|++|+|||++++.+.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.66 E-value=0.048 Score=48.83 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.8
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..++++|++|+|||||++.+++
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 4689999999999999999875
No 307
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.66 E-value=0.042 Score=48.07 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..++++|++|+|||||++.+++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998753
No 308
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.64 E-value=0.063 Score=51.49 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 57788999999999999999999875
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.63 E-value=0.065 Score=47.82 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|+++|++|+||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999999874
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.56 E-value=0.057 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
+++-.++++|++|+|||||++.++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 367789999999999999999877
No 311
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.54 E-value=0.05 Score=51.30 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++..++++|++|+||||+++.+++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3567899999999999999999875
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.48 E-value=0.052 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..+..++++|++|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999999875
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.46 E-value=0.054 Score=48.43 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+||||+.+.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998753
No 314
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.44 E-value=0.065 Score=45.79 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=18.4
Q ss_pred CEEEEecCCCCChhhHHHHh
Q 037423 238 PTLCLVGAPNVGKSSLVRVI 257 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l 257 (435)
..|+++|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999998
No 315
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.43 E-value=0.047 Score=52.83 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 57889999999999999999999864
No 316
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.38 E-value=0.58 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....|+++|.+|+||||+.+.+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999875
No 317
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=92.25 E-value=0.077 Score=49.70 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=32.4
Q ss_pred HHHhhhhhhcccccchhHHHHHHHH-HHHHHHHHHHhch
Q 037423 92 ALKKAKRVSATKGISNIAKRERNKA-AKQLDALMKELAV 129 (435)
Q Consensus 92 ~~~r~~~~~~~~~~~~~~~~~r~~~-~~~l~~~~~~L~~ 129 (435)
...+.++++..++.+++.+.||+|| .+|||+++++||+
T Consensus 212 e~~~l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELGe 250 (252)
T 3ljc_A 212 DLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGE 250 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345577788889999999999999 7899999999986
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.23 E-value=0.071 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.13 E-value=0.081 Score=52.46 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+.+-
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 56788999999999999999999874
No 320
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.11 E-value=0.071 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 321
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.10 E-value=0.063 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEecCCCCChhhHHHHhhCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~ 260 (435)
++++|+||+|||||++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999863
No 322
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.05 E-value=0.082 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=22.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+-.++++|++|+|||||++.+++-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 778999999999999999999875
No 323
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.04 E-value=0.83 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...-+++.|+||+|||++++++++
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999985
No 324
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.01 E-value=0.052 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++-.++++|++|+|||||++.+++
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999976
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.98 E-value=0.089 Score=46.32 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+.+..|+++|.+|+||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999999998754
No 326
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.96 E-value=0.096 Score=45.39 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 327
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.95 E-value=0.076 Score=45.48 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..++++|++|+|||+|++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999998763
No 328
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.93 E-value=0.066 Score=49.56 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++..++++|++|+||||+++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3566899999999999999999875
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.93 E-value=0.086 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|++.|.+|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.92 E-value=0.085 Score=52.20 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcC
Confidence 46778999999999999999999874
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.90 E-value=0.074 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.583 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|+++|++|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998874
No 332
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.069 Score=54.64 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..+..++++|++|+|||||++.+++-
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 36889999999999999999998753
No 333
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.76 E-value=0.084 Score=45.62 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999975
No 334
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.74 E-value=1.3 Score=44.64 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
...-+.+.|+||+|||++++++++.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHH
Confidence 3456999999999999999999853
No 335
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.73 E-value=0.094 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 46778999999999999999999874
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.71 E-value=0.085 Score=47.20 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..+..++++|.+|+||||+.+.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999999864
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.69 E-value=0.097 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcC
Confidence 46778999999999999999999874
No 338
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.66 E-value=1.2 Score=45.42 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
...-|++.|+||+|||+|++++++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4567999999999999999999853
No 339
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.63 E-value=0.47 Score=44.33 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....+++.|+||+|||++++.++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999753
No 340
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.60 E-value=0.1 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 46778999999999999999999874
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.57 E-value=0.12 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999874
No 342
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=1.7 Score=43.99 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+..-+++.|+||+|||++++++++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456999999999999999999853
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.52 E-value=0.088 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 344
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.42 E-value=1.5 Score=43.77 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..-+.+.|+||+|||++++++++.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 455999999999999999999853
No 345
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.39 E-value=0.15 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|.+|+||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.38 E-value=0.086 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999875
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.38 E-value=0.079 Score=46.32 Aligned_cols=23 Identities=17% Similarity=0.446 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.+|+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999873
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.38 E-value=0.1 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46778999999999999999999874
No 349
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.37 E-value=0.11 Score=51.65 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..+-.++++|++|+|||||++.+++-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 46778999999999999999999874
No 350
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.32 E-value=0.09 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|+++|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.31 E-value=0.11 Score=48.36 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhh
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
.++..|+++|++|+||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999998
No 352
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.30 E-value=0.11 Score=45.53 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|+++|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998864
No 353
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.28 E-value=0.11 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.17 E-value=0.22 Score=42.78 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|++|+|||++++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999998875
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.06 E-value=0.11 Score=46.40 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++++|++|+||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 356
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.06 E-value=0.11 Score=45.74 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+.++++|++|+|||||++.+++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 467899999999999999998853
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.01 E-value=0.12 Score=51.44 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcC
Confidence 46778999999999999999999874
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.99 E-value=0.14 Score=45.42 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..|+++|.+|+||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3567999999999999999998754
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.97 E-value=0.11 Score=46.07 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 360
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.93 E-value=1.1 Score=43.06 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+..-+++.|+||+|||++++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999853
No 361
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.89 E-value=0.12 Score=44.92 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....|+++|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 356799999999999999999873
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.82 E-value=0.098 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+|||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 363
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.79 E-value=0.091 Score=51.76 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 46778999999999999999999874
No 364
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.77 E-value=2.2 Score=39.94 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=21.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....+++.|+||+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 365
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.76 E-value=0.12 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 366
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.67 E-value=0.13 Score=51.37 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 56788999999999999999999874
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.59 E-value=0.15 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|+++|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 368
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.56 E-value=0.12 Score=45.19 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999998864
No 369
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.53 E-value=0.13 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999874
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.51 E-value=0.15 Score=46.09 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 371
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.46 E-value=0.12 Score=51.05 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..++++|++|+|||||++.+++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4668999999999999999999874
No 372
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.42 E-value=0.14 Score=44.97 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++..++++|.+|+||||+.+.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3566789999999999999999864
No 373
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.22 E-value=0.14 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+|||||+..+++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999999873
No 374
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.21 E-value=0.15 Score=53.30 Aligned_cols=31 Identities=19% Similarity=0.504 Sum_probs=25.1
Q ss_pred cCCccCCCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 229 AMPVVDLETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 229 ~lp~~~~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+|.. .++-.++++|++|+|||||++.+++.
T Consensus 18 ~l~~~-~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 18 GLPTP-KNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCCC-CTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCC-CCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 45533 35678899999999999999999874
No 375
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.19 E-value=0.14 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999863
No 376
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.19 E-value=0.086 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 46778999999999999999999874
No 377
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.17 E-value=0.15 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+...|+++|.+|+||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998863
No 378
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.17 E-value=0.12 Score=47.22 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++..+++.|..|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999998764
No 379
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.09 E-value=0.067 Score=47.12 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..++++|++|+|||||++.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998863
No 380
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.02 E-value=0.25 Score=47.06 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|++|+||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999864
No 381
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.99 E-value=0.14 Score=44.64 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=19.6
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 382
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.94 E-value=0.19 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..|+++|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 383
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.88 E-value=0.14 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..++++|++|+|||||++.+++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999864
No 384
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.87 E-value=0.15 Score=48.35 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++-.++++|++|+|||||+..+++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3677899999999999999998874
No 385
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.84 E-value=1.9 Score=36.01 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
...|.+.|++|+|||++...+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 345999999999999999988754
No 386
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.82 E-value=0.17 Score=44.51 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 387
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.76 E-value=0.13 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+||||+++.+++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 466799999999999999999875
No 388
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.76 E-value=0.13 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+||||+++.+++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344899999999999999999875
No 389
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.75 E-value=0.19 Score=44.92 Aligned_cols=25 Identities=16% Similarity=0.073 Sum_probs=22.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+++..++++|++|+|||||+..++.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999976
No 390
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.75 E-value=0.16 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..|+++|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.66 E-value=0.14 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....++++|++|+|||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 392
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.65 E-value=0.16 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 393
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.64 E-value=0.17 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998875
No 394
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.55 E-value=0.15 Score=48.84 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++..|+++|.+|+|||||++.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998764
No 395
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.53 E-value=0.11 Score=51.17 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+.+++++|++|+|||||++.|++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 668999999999999999999864
No 396
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.45 E-value=0.17 Score=43.90 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.2
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.+|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 397
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.40 E-value=0.17 Score=45.36 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 398
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.31 E-value=0.2 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999874
No 399
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=89.26 E-value=0.15 Score=47.13 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=19.4
Q ss_pred EEEecCCCCChhhHHHHhhCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~ 260 (435)
++++|++|+|||||++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999853
No 400
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.25 E-value=0.18 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999874
No 401
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.24 E-value=0.22 Score=44.20 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|+++|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44689999999999999998874
No 402
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.24 E-value=0.2 Score=52.86 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+++-
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56778999999999999999999874
No 403
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.23 E-value=0.24 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|.||+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445789999999999999999864
No 404
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.22 E-value=0.2 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+++-
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 56778999999999999999999874
No 405
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.11 E-value=0.19 Score=44.30 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....|+++|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567899999999999999998754
No 406
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.11 E-value=2.6 Score=40.01 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=50.8
Q ss_pred EEEEecCCCCChhhHHHHhhCCCCccccCCceeeeeeEEEEEeCCceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcC--
Q 037423 239 TLCLVGAPNVGKSSLVRVISTGKPEVCNYPFTTRGILMGHINLGYQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHL-- 316 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~~~~~v~~~~~tT~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~-- 316 (435)
.+++.|++|+|||+++..++..-. ..+.-++.... . .+.+......+....
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~---------------------~~~~~i~~~~~--~----~~~i~~~~~~~~~~~~~ 102 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVN---------------------ADMMFVNGSDC--K----IDFVRGPLTNFASAASF 102 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTT---------------------EEEEEEETTTC--C----HHHHHTHHHHHHHBCCC
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhC---------------------CCEEEEccccc--C----HHHHHHHHHHHHhhccc
Confidence 456667799999999999975320 11222332111 1 122222222222222
Q ss_pred -CcEEEEEEeCCCCCCCC-HHHHHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 037423 317 -PTAILFVHDLSGECGTS-PSDQFTIYKEIKERFSDHIWLDVVSKCDLLQ 364 (435)
Q Consensus 317 -~d~il~ViD~s~~~g~s-~~~~~~l~~~l~~~~~~~piIvV~NK~Dl~~ 364 (435)
....++++|=- ...+ ...+..++..+.....+..+|+..|..+...
T Consensus 103 ~~~~~vliiDEi--~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 103 DGRQKVIVIDEF--DRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGII 150 (324)
T ss_dssp SSCEEEEEEESC--CCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSC
T ss_pred CCCCeEEEEECC--cccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccC
Confidence 14456667744 3445 4455555555555434567888888776443
No 407
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.98 E-value=0.31 Score=41.79 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=20.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|++|+|||+++..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999998864
No 408
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.94 E-value=0.22 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+++-
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 46778999999999999999999864
No 409
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.83 E-value=0.24 Score=43.53 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+.++++|.+|+||||++..+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999874
No 410
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.80 E-value=0.21 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+++-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56778999999999999999999864
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.77 E-value=0.18 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999864
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.72 E-value=0.23 Score=43.24 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.5
Q ss_pred CCEEEEecCCCCChhhHHHHhh
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~ 258 (435)
....+++|++|+||||++.++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999975
No 413
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.60 E-value=0.22 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.4
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..|+++|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999998864
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.59 E-value=0.21 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=20.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|+++|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.56 E-value=0.22 Score=45.25 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=22.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+..++++|++|+|||||+..++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3577899999999999999999886
No 416
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.53 E-value=0.22 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..|++.|.+|+||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 417
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.50 E-value=0.26 Score=44.35 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..+++.|++|+|||+++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998864
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.48 E-value=0.21 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-+++++|++|+|||||++.+++.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999999999864
No 419
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.24 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 46788999999999999999999874
No 420
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.44 E-value=0.23 Score=45.44 Aligned_cols=23 Identities=17% Similarity=0.440 Sum_probs=19.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|+++|+||+||+|....|+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999998874
No 421
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.42 E-value=0.21 Score=43.54 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.6
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.40 E-value=0.24 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 423
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.31 E-value=0.2 Score=52.68 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+.+-
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 56778999999999999999998864
No 424
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.24 E-value=2.1 Score=42.13 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....+++.|++|+|||+++..++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999653
No 425
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.23 E-value=0.22 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..++++|++|+||||+++.+++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556999999999999999999864
No 426
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.23 E-value=0.24 Score=43.24 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=19.0
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 427
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.17 E-value=0.21 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=20.3
Q ss_pred CEEEEecCCCCChhhHHHHhhCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..++++|+||+|||||++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998753
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.13 E-value=0.24 Score=44.47 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..++++|.+|+||||+.+.|.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998864
No 429
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.01 E-value=0.2 Score=50.56 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
++..++++|++|+||||+++.+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHh
Confidence 456799999999999999999875
No 430
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.95 E-value=0.25 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=22.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+.+..++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3567899999999999999999875
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=87.94 E-value=0.24 Score=44.48 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.90 E-value=0.53 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|+||+|||+++..+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 455799999999999999987764
No 433
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.83 E-value=0.28 Score=51.91 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCC
Confidence 46778999999999999999999874
No 434
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.78 E-value=0.32 Score=44.40 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..|+++|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 435
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.71 E-value=0.22 Score=46.86 Aligned_cols=21 Identities=43% Similarity=0.767 Sum_probs=19.4
Q ss_pred EEEecCCCCChhhHHHHhhCC
Q 037423 240 LCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 240 v~~~G~~~~GKssl~~~l~~~ 260 (435)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999863
No 436
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.71 E-value=0.25 Score=43.32 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|++.|.+|+||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 437
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.64 E-value=0.25 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.1
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+++-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999998864
No 438
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.44 E-value=0.28 Score=45.70 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.++++|++|+||||+.+.|+.
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 439
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.32 E-value=0.28 Score=44.06 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..|+++|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 440
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.27 E-value=0.82 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.7
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
...-+++.|+||+|||++++++++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4567999999999999999999853
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.26 E-value=0.29 Score=44.27 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|+||+||+|....|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998874
No 442
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.19 E-value=0.46 Score=43.19 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=19.6
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...+++.|+||+|||+++.++++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999888764
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.18 E-value=0.31 Score=41.75 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.8
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|++.|.+|+||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 444
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.12 E-value=0.21 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.9
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+.++++|..|+|||||++.+++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 356899999999999999999854
No 445
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.08 E-value=0.32 Score=44.89 Aligned_cols=22 Identities=32% Similarity=0.603 Sum_probs=19.9
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..++++|++|+|||++++.+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.02 E-value=0.33 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++-
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35778999999999999999999874
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.93 E-value=0.38 Score=44.01 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=21.9
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..+..|+++|.+|+||||+.+.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998874
No 448
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=86.90 E-value=0.15 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.9
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 449
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.89 E-value=0.36 Score=45.72 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
....|+++|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999999887
No 450
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.83 E-value=0.32 Score=44.18 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998863
No 451
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=86.72 E-value=0.36 Score=42.65 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998874
No 452
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.68 E-value=0.3 Score=49.52 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-+++++|++|+|||||++.+++.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999999999864
No 453
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.62 E-value=0.35 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.463 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36788999999999999999999875
No 454
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=86.53 E-value=0.31 Score=45.77 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+++..++++|++|+|||||+..++.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3677899999999999999998874
No 455
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.34 E-value=0.36 Score=44.27 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..|++.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 566789999999999999999874
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=86.01 E-value=0.39 Score=50.79 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.++-.++++|++|+|||||++.+++.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35778999999999999999999874
No 457
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=86.00 E-value=1.8 Score=40.62 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEE-EEEeccCC
Q 037423 284 QNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWL-DVVSKCDL 362 (435)
Q Consensus 284 ~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piI-vV~NK~Dl 362 (435)
..++|+|||+...... + ..+...+|.+++|+... ..+........+.+... +.+++ +|+|++|.
T Consensus 192 yD~VIIDtpp~~~~~d---------~-~~l~~~aD~vilVv~~~---~~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD---------A-QLFSKFTGNVVYVVNSE---NNNKDEVKKGKELIEAT--GAKLLGVVLNRMPK 256 (271)
T ss_dssp CSEEEEECCCTTTCSH---------H-HHHHHHHCEEEEEEETT---SCCHHHHHHHHHHHHTT--TCEEEEEEEEEECC
T ss_pred CCEEEEeCCCCchHHH---------H-HHHHHHCCEEEEEEeCC---CCcHHHHHHHHHHHHhC--CCCEEEEEEeCCcC
Confidence 4679999999764321 1 11111237899999875 23556665566666553 55665 89999985
Q ss_pred C
Q 037423 363 L 363 (435)
Q Consensus 363 ~ 363 (435)
.
T Consensus 257 ~ 257 (271)
T 3bfv_A 257 D 257 (271)
T ss_dssp -
T ss_pred C
Confidence 4
No 458
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.88 E-value=0.36 Score=55.73 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+++-+|++||++|+|||||++.|.+
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 4677899999999999999999986
No 459
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.85 E-value=1.6 Score=42.55 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....+++.|++|+|||++++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999753
No 460
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.79 E-value=0.43 Score=44.11 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...+++.|++|+||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998873
No 461
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.68 E-value=0.39 Score=40.94 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.4
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
.....+++|++|+||||++.++.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34467999999999999999874
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.61 E-value=0.42 Score=42.04 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998874
No 463
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.45 E-value=0.41 Score=43.44 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
++..++++|+||+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 56789999999999999977665
No 464
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.42 E-value=0.4 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...|++.|.+|+||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998864
No 465
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.42 E-value=0.46 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.0
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.-+++.|+||+|||+++.+++.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4567779999999999999875
No 466
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.39 E-value=0.35 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.1
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
-.++++|++|+|||||++.+++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 6789999999999999999874
No 467
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.23 E-value=0.48 Score=45.14 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
.+..+++.|+||+|||++++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4557999999999999999999853
No 468
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.82 E-value=0.49 Score=42.04 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.5
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..+++.|++|+|||+++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 469
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.72 E-value=0.51 Score=49.88 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=21.4
Q ss_pred CEEEEecCCCCChhhHHHHhhCCC
Q 037423 238 PTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
-.++++|++|+|||||++.+++-.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 568999999999999999998753
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.41 E-value=0.54 Score=41.48 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998864
No 471
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.29 E-value=1.3 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.1
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|+||+|||++.+.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999874
No 472
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.14 E-value=0.52 Score=42.06 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....|+++|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999998874
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=84.04 E-value=0.51 Score=44.60 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEecCCCCChhhHHHHhhC
Q 037423 239 TLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 239 ~v~~~G~~~~GKssl~~~l~~ 259 (435)
.|+++|.||+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 474
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.88 E-value=0.53 Score=45.52 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
.+..+++.|++|+|||+|++.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 475
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=83.77 E-value=3.5 Score=37.94 Aligned_cols=65 Identities=6% Similarity=-0.077 Sum_probs=43.3
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEEEEEeccC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWLDVVSKCD 361 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piIvV~NK~D 361 (435)
...++|+|||+.... ....++.. +|.+++++.++ ..+......+.+.+.....+.++.+|+|+++
T Consensus 144 ~yD~viiD~pp~~~~----------~~~~~l~~-aD~vivv~~~~---~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV----------TLKNALLC-SDYVIIPMTAE---KWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCSH----------HHHHHHTT-CSEEEEEEESC---TTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCccH----------HHHHHHHH-CCeEEEEeCCC---hHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 457899999986531 23344444 58899998875 2345555556666666544567889999994
No 476
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.76 E-value=0.46 Score=46.87 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
+....+++|++|+||||++++++
T Consensus 22 ~~g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 22 QSGITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 33467899999999999999876
No 477
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.35 E-value=0.54 Score=44.81 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=17.8
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+...|++.|.+|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998864
No 478
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=83.35 E-value=2.7 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.6
Q ss_pred CCCEEEEecCCCCChhhHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVI 257 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l 257 (435)
.+..++++|++|+||||+++.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999999988
No 479
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.30 E-value=0.62 Score=43.81 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=20.3
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...+++.|+||+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 480
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=83.21 E-value=10 Score=36.77 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=48.6
Q ss_pred cEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcE-EEEEeccCCCCCCCccccchhhh-HHHHHHHhhhhcCC---Cc
Q 037423 318 TAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIW-LDVVSKCDLLQTSPVAYVTEDED-SEHLEMASYRKMGP---DG 392 (435)
Q Consensus 318 d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~pi-IvV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~ 392 (435)
+.+++|.-+. ..+..+.......+... +.|+ -+|+|++.-...... ...... .....+..+.+... ..
T Consensus 238 ~~~vlV~~p~---~~~~~e~~r~~~~l~~~--~i~v~gvV~N~~~~~~~~~~--~~~~~~~~~~~~l~~i~~~~~~~~l~ 310 (349)
T 3ug7_A 238 TAFRLVVIPE---EMSILESERAMKALQKY--GIPIDAVIVNQLIPEDVQCD--FCRARRELQLKRLEMIKEKFGDKVIA 310 (349)
T ss_dssp EEEEEEECSS---HHHHHHHHHHHHHHHHT--TCCEEEEEEEEECCSCCCSH--HHHHHHHHHHHHHHHHHHHSTTSEEE
T ss_pred ceEEEEECCC---ccHHHHHHHHHHHHHHC--CCCeeEEEEcCCccccCCCc--hHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 5677776654 33455666667777765 6665 679999976532110 111111 11112222332222 23
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHh
Q 037423 393 AIRVSVMNEEGLNELKDRVYQMLV 416 (435)
Q Consensus 393 ~i~vSA~~g~GI~eL~~~i~~~l~ 416 (435)
.++.....-.|++.|......++.
T Consensus 311 ~iPl~~~e~~g~~~L~~~~~~l~~ 334 (349)
T 3ug7_A 311 YVPLLRTEAKGIETLKQIAKILYG 334 (349)
T ss_dssp EEECCSSCSCSHHHHHHHHHHHC-
T ss_pred EecCCCCCCCCHHHHHHHHHHHcC
Confidence 467777777898887665555543
No 481
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.21 E-value=0.53 Score=45.10 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
+..+++.|++|+|||++++.+.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999999875
No 482
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.01 E-value=1.4 Score=44.42 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+...+++.|+||+|||+++..+...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999753
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.72 E-value=0.63 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTGK 261 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~~ 261 (435)
.++-.++++|++|+|||||++.++++.
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467789999999999999999998543
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.62 E-value=0.71 Score=41.75 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..+..++++|++|+|||+|...|...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45677999999999999999999864
No 485
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=82.60 E-value=4.5 Score=37.23 Aligned_cols=66 Identities=15% Similarity=0.030 Sum_probs=41.4
Q ss_pred CceEEEEeCCCCCCCCchhhhHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCcEE-EEEeccC
Q 037423 283 YQNFQITDTPGLLQRRDEDRNNLEKLTLAVLTHLPTAILFVHDLSGECGTSPSDQFTIYKEIKERFSDHIWL-DVVSKCD 361 (435)
Q Consensus 283 ~~~~~liDTpG~~~~~~~~~~~ie~~~~~~l~~~~d~il~ViD~s~~~g~s~~~~~~l~~~l~~~~~~~piI-vV~NK~D 361 (435)
...++|+|||+..... ......+. .+|.+++|+.++ ..+..+....++.+... +.+++ +|+|+.|
T Consensus 128 ~yD~ViID~pp~~~~~--------~~~~~~~~-~aD~viiv~~~~---~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDA--------PLTVMQDA-KPTGVVVVSTPQ---ELTAVIVEKAINMAEET--NTSVLGLVENMSY 193 (262)
T ss_dssp SCSEEEEECCSSSSSH--------HHHHHHHH-CCSEEEEEECSS---SCCHHHHHHHHHHHHTT--TCCEEEEEETTCC
T ss_pred CCCEEEEECcCCCchH--------HHHHHhhc-cCCeEEEEecCc---cchHHHHHHHHHHHHhC--CCCEEEEEECCCc
Confidence 4678999999865321 01111111 347788888765 34566665566666654 56776 9999987
Q ss_pred C
Q 037423 362 L 362 (435)
Q Consensus 362 l 362 (435)
.
T Consensus 194 ~ 194 (262)
T 2ph1_A 194 F 194 (262)
T ss_dssp E
T ss_pred c
Confidence 4
No 486
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=82.38 E-value=1.1 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.6
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....++++|+||+|||+++..+..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998864
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.14 E-value=0.53 Score=46.12 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+.+..+.++|++|+|||||+..++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36778999999999999999998753
No 488
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.03 E-value=0.68 Score=53.46 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++..++++|++|+|||||++.+++.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccc
Confidence 46778999999999999999999864
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.99 E-value=0.46 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=23.4
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
..+-.++++|++|+|||||++.+++.
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46778999999999999999999874
No 490
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=81.64 E-value=0.71 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.2
Q ss_pred CCCCEEEEecCCCCChhhHHHHhhCC
Q 037423 235 LETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 235 ~~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+++-.++++|++|+|||||++.+.+-
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 56778999999999999999999864
No 491
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.62 E-value=0.7 Score=44.74 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|++|+|||++++.+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 492
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.50 E-value=2.5 Score=39.74 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.5
Q ss_pred CCEEEEecCCCCChhhHHHHhhC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
...+++.|+||+|||.|+.+++.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 44699999999999999999885
No 493
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.39 E-value=0.8 Score=44.75 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.0
Q ss_pred CCEEEEecCCCCChhhHHHHhhCC
Q 037423 237 TPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 237 ~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
+..|+++|++|+|||+|...|+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 494
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=81.29 E-value=0.86 Score=43.75 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|+||+|||+++.+++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999975
No 495
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=81.29 E-value=0.64 Score=43.30 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
....+++.|++|+|||+++..+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457899999999999999998753
No 496
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.15 E-value=0.89 Score=42.88 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=19.7
Q ss_pred CEEEEecCCCCChhhHHHHhhC
Q 037423 238 PTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 238 ~~v~~~G~~~~GKssl~~~l~~ 259 (435)
..+++.|++|+|||++++.+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998875
No 497
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.14 E-value=0.59 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhhCC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVISTG 260 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~~ 260 (435)
++..|++.|.+|+||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999988753
No 498
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=81.05 E-value=0.74 Score=41.25 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.5
Q ss_pred CCCEEEEecCCCCChhhHHHHhh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIS 258 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~ 258 (435)
.....+++|++|+||||++.++.
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHH
Confidence 34567999999999999999874
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.00 E-value=0.69 Score=47.81 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=20.2
Q ss_pred CCCEEEEecCCCCChhhHHHHh
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVI 257 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l 257 (435)
++-.++++|++|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 6778999999999999999984
No 500
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=80.96 E-value=3.2 Score=42.47 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=20.9
Q ss_pred CCCEEEEecCCCCChhhHHHHhhC
Q 037423 236 ETPTLCLVGAPNVGKSSLVRVIST 259 (435)
Q Consensus 236 ~~~~v~~~G~~~~GKssl~~~l~~ 259 (435)
....+++.|+||+|||++++.+..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 345699999999999999999965
Done!